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Sample records for 3d region growing

  1. An adaptive 3D region growing algorithm to automatically segment and identify thoracic aorta and its centerline using computed tomography angiography scans

    NASA Astrophysics Data System (ADS)

    Ferreira, F.; Dehmeshki, J.; Amin, H.; Dehkordi, M. E.; Belli, A.; Jouannic, A.; Qanadli, S.

    2010-03-01

    Thoracic Aortic Aneurysm (TAA) is a localized swelling of the thoracic aorta. The progressive growth of an aneurysm may eventually cause a rupture if not diagnosed or treated. This necessitates the need for an accurate measurement which in turn calls for the accurate segmentation of the aneurysm regions. Computer Aided Detection (CAD) is a tool to automatically detect and segment the TAA in the Computer tomography angiography (CTA) images. The fundamental major step of developing such a system is to develop a robust method for the detection of main vessel and measuring its diameters. In this paper we propose a novel adaptive method to simultaneously segment the thoracic aorta and to indentify its center line. For this purpose, an adaptive parametric 3D region growing is proposed in which its seed will be automatically selected through the detection of the celiac artery and the parameters of the method will be re-estimated while the region is growing thorough the aorta. At each phase of region growing the initial center line of aorta will also be identified and modified through the process. Thus the proposed method simultaneously detect aorta and identify its centerline. The method has been applied on CT images from 20 patients with good agreement with the visual assessment by two radiologists.

  2. Regional geothermal 3D modelling in Denmark

    NASA Astrophysics Data System (ADS)

    Poulsen, S. E.; Balling, N.; Bording, T. S.; Nielsen, S. B.

    2012-04-01

    In the pursuit of sustainable and low carbon emission energy sources, increased global attention has been given to the exploration and exploitation of geothermal resources within recent decades. In 2009 a national multi-disciplinary geothermal research project was established. As a significant part of this project, 3D temperature modelling is to be carried out, with special emphasis on temperatures of potential geothermal reservoirs in the Danish area. The Danish subsurface encompasses low enthalpy geothermal reservoirs of mainly Triassic and Jurassic age. Geothermal plants at Amager (Copenhagen) and Thisted (Northern Jutland) have the capacity of supplying the district heating network with up to 14 MW and 7 MW, respectively, by withdrawing warm pore water from the Gassum (Lower Jurassic/Upper Triassic) and Bunter (Lower Triassic) sandstone reservoirs, respectively. Explorative studies of the subsurface temperature regime typically are based on a combination of observations and modelling. In this study, the open-source groundwater modelling code MODFLOW is modified to simulate the subsurface temperature distribution in three dimensions by taking advantage of the mathematical similarity between saturated groundwater flow (Darcy flow) and heat conduction. A numerical model of the subsurface geology in Denmark is built and parameterized from lithological information derived from joint interpretation of seismic surveys and borehole information. Boundary conditions are constructed from knowledge about the heat flow from the Earth's interior and the shallow ground temperature. Matrix thermal conductivities have been estimated from analysis of high-resolution temperature logs measured in deep wells and porosity-depth relations are included using interpreted main lithologies. The model takes into account the dependency of temperature and pressure on thermal conductivity. Moreover, a transient model based correction of the paleoclimatic thermal disturbance caused by the

  3. 3D MHD Models of Active Region Loops

    NASA Technical Reports Server (NTRS)

    Ofman, Leon

    2004-01-01

    Present imaging and spectroscopic observations of active region loops allow to determine many physical parameters of the coronal loops, such as the density, temperature, velocity of flows in loops, and the magnetic field. However, due to projection effects many of these parameters remain ambiguous. Three dimensional imaging in EUV by the STEREO spacecraft will help to resolve the projection ambiguities, and the observations could be used to setup 3D MHD models of active region loops to study the dynamics and stability of active regions. Here the results of 3D MHD models of active region loops are presented, and the progress towards more realistic 3D MHD models of active regions. In particular the effects of impulsive events on the excitation of active region loop oscillations, and the generation, propagations and reflection of EIT waves are shown. It is shown how 3D MHD models together with 3D EUV observations can be used as a diagnostic tool for active region loop physical parameters, and to advance the science of the sources of solar coronal activity.

  4. Scene segmentation through region growing

    NASA Technical Reports Server (NTRS)

    Latty, R. S.

    1984-01-01

    A computer algorithm to segment Landsat Thematic Mapper (TM) images into areas representing surface features is described. The algorithm is based on a region growing approach and uses edge elements and edge element orientation to define the limits of the surface features. Adjacent regions which are not separated by edges are linked to form larger regions. Some of the advantages of scene segmentation over conventional TM image extraction algorithms are discussed, including surface feature analysis on a pixel-by-pixel basis, and faster identification of the pixels in each region. A detailed flow diagram of region growing algorithm is provided.

  5. 3D optical tomography in the presence of void regions

    NASA Astrophysics Data System (ADS)

    Riley, J.; Dehghani, Hamid; Schweiger, Martin; Arridge, Simon R.; Ripoll, Jorge; Nieto-Vesperinas, Manuel

    2000-12-01

    We present an investigation of the effect of a 3D non-scattering gap region on image reconstruction in diffuse optical tomography. The void gap is modelled by the Radiosity-Diffusion method and the inverse problem is solved using the adjoint field method. The case of a sphere with concentric spherical gap is used as an example.

  6. 3D optical tomography in the presence of void regions.

    PubMed

    Riley, J; Dehghani, H; Schweiger, M; Arridge, S; Ripoll, J; Nieto-Vesperinas, M

    2000-12-18

    We present an investigation of the effect of a 3D non-scattering gap region on image reconstruction in diffuse optical tomography. The void gap is modelled by the Radiosity-Diffusion method and the inverse problem is solved using the adjoint field method. The case of a sphere with concentric spherical gap is used as an example. PMID:19407898

  7. A practical salient region feature based 3D multi-modality registration method for medical images

    NASA Astrophysics Data System (ADS)

    Hahn, Dieter A.; Wolz, Gabriele; Sun, Yiyong; Hornegger, Joachim; Sauer, Frank; Kuwert, Torsten; Xu, Chenyang

    2006-03-01

    We present a novel representation of 3D salient region features and its integration into a hybrid rigid-body registration framework. We adopt scale, translation and rotation invariance properties of those intrinsic 3D features to estimate a transform between underlying mono- or multi-modal 3D medical images. Our method combines advantageous aspects of both feature- and intensity-based approaches and consists of three steps: an automatic extraction of a set of 3D salient region features on each image, a robust estimation of correspondences and their sub-pixel accurate refinement with outliers elimination. We propose a region-growing based approach for the extraction of 3D salient region features, a solution to the problem of feature clustering and a reduction of the correspondence search space complexity. Results of the developed algorithm are presented for both mono- and multi-modal intra-patient 3D image pairs (CT, PET and SPECT) that have been acquired for change detection, tumor localization, and time based intra-person studies. The accuracy of the method is clinically evaluated by a medical expert with an approach that measures the distance between a set of selected corresponding points consisting of both anatomical and functional structures or lesion sites. This demonstrates the robustness of the proposed method to image overlap, missing information and artefacts. We conclude by discussing potential medical applications and possibilities for integration into a non-rigid registration framework.

  8. GBS: Global 3D simulation of tokamak edge region

    NASA Astrophysics Data System (ADS)

    Zhu, Ben; Fisher, Dustin; Rogers, Barrett; Ricci, Paolo

    2012-10-01

    A 3D two-fluid global code, namely Global Braginskii Solver (GBS), is being developed to explore the physics of turbulent transport, confinement, self-consistent profile formation, pedestal scaling and related phenomena in the edge region of tokamaks. Aimed at solving drift-reduced Braginskii equations [1] in complex magnetic geometry, the GBS is used for turbulence simulation in SOL region. In the recent upgrade, the simulation domain is expanded into close flux region with twist-shift boundary conditions. Hence, the new GBS code is able to explore global transport physics in an annular full-torus domain from the top of the pedestal into the far SOL. We are in the process of identifying and analyzing the linear and nonlinear instabilities in the system using the new GBS code. Preliminary results will be presented and compared with other codes if possible.[4pt] [1] A. Zeiler, J. F. Drake and B. Rogers, Phys. Plasmas 4, 2134 (1997)

  9. Relative Scale Estimation and 3D Registration of Multi-Modal Geometry Using Growing Least Squares.

    PubMed

    Mellado, Nicolas; Dellepiane, Matteo; Scopigno, Roberto

    2016-09-01

    The advent of low cost scanning devices and the improvement of multi-view stereo techniques have made the acquisition of 3D geometry ubiquitous. Data gathered from different devices, however, result in large variations in detail, scale, and coverage. Registration of such data is essential before visualizing, comparing and archiving them. However, state-of-the-art methods for geometry registration cannot be directly applied due to intrinsic differences between the models, e.g., sampling, scale, noise. In this paper we present a method for the automatic registration of multi-modal geometric data, i.e., acquired by devices with different properties (e.g., resolution, noise, data scaling). The method uses a descriptor based on Growing Least Squares, and is robust to noise, variation in sampling density, details, and enables scale-invariant matching. It allows not only the measurement of the similarity between the geometry surrounding two points, but also the estimation of their relative scale. As it is computed locally, it can be used to analyze large point clouds composed of millions of points. We implemented our approach in two registration procedures (assisted and automatic) and applied them successfully on a number of synthetic and real cases. We show that using our method, multi-modal models can be automatically registered, regardless of their differences in noise, detail, scale, and unknown relative coverage. PMID:26672045

  10. 3D Finite Difference Modelling of Basaltic Region

    NASA Astrophysics Data System (ADS)

    Engell-Sørensen, L.

    2003-04-01

    The main purpose of the work was to generate realistic data to be applied for testing of processing and migration tools for basaltic regions. The project is based on the three - dimensional finite difference code (FD), TIGER, made by Sintef. The FD code was optimized (parallelized) by the author, to run on parallel computers. The parallel code enables us to model large-scale realistic geological models and to apply traditional seismic and micro seismic sources. The parallel code uses multiple processors in order to manipulate subsets of large amounts of data simultaneously. The general anisotropic code uses 21 elastic coefficients. Eight independent coefficients are needed as input parameters for the general TI medium. In the FD code, the elastic wave field computation is implemented by a higher order FD solution to the elastic wave equation and the wave fields are computed on a staggered grid, shifted half a node in one or two directions. The geological model is a gridded basalt model, which covers from 24 km to 37 km of a real shot line in horizontal direction and from the water surface to the depth of 3.5 km. The 2frac {1}{2}D model has been constructed using the compound modeling software from Norsk Hydro. The vertical parameter distribution is obtained from observations in two wells. At The depth of between 1100 m to 1500 m, a basalt horizon covers the whole sub surface layers. We have shown that it is possible to simulate a line survey in realistic (3D) geological models in reasonable time by using high performance computers. The author would like to thank Norsk Hydro, Statoil, GEUS, and SINTEF for very helpful discussions and Parallab for being helpful with the new IBM, p690 Regatta system.

  11. 3D strength map of the Asia region

    NASA Astrophysics Data System (ADS)

    Rebetskiy, Y. L.; Baranov, A. A.

    2009-04-01

    The Southern and Central Asia is a tectonically complex region which characterized by the great collision between the Asian and Indian plates. Its tectonic evolution is strongly related to the active subduction process along the Pacific border. Stress investigation in the continental crust is a very important problem not only for science but also for the practical purposes. There are four main factors which produce tectonic stresses: gravity anomalies of the crust, density inhomogeneities, deformation from area with intraplate collision, residual elastic deformations and underthrust stresses conditions from convective mantle. We present the stress model of the crust and lithosphere for the Central and Southern Asia on the basis of the finite element modeling. For the crust we take the elasto-plastic rheology with Drucker-Prager criterion. In the lithosphere the elasto-plastic model with von Mises criterion is assumed. We investigated stresses which are produced by the crustal density inhomogeneities and surface relief. The calculations are done using the U-WAY finite element code developed at the Institute of Applied Mechanics Russian Academy of Sciences. (similar to the Nastran program) Density inhomogeneities are based on the AsCRUST-08 crustal model (Baranov, 2008), which has resolution of 1 x 1 degree. AsCRUST-08 was built using the data of deep seismic reflection, refraction and receiver functions studies from published papers. The complex 3D crustal model consists of three layers: upper, middle, and lower crust. Besides depth of the boundaries, we provided average P-wave velocities in the upper, middle and lower parts of the crystalline crust and sediments. The seismic P-velocity data was also recalculated to the densities and the elastic moduli of the crustal layers using the rheological properties and geological constraints. Strength parameters of rocks strongly depend on temperature, tectonic and fluid pressure. Fluid pressure can reduce resistance forces

  12. 3D Mandibular Superimposition: Comparison of Regions of Reference for Voxel-Based Registration

    PubMed Central

    Ruellas, Antonio Carlos de Oliveira; Yatabe, Marilia Sayako; Souki, Bernardo Quiroga; Benavides, Erika; Nguyen, Tung; Luiz, Ronir Raggio; Franchi, Lorenzo; Cevidanes, Lucia Helena Soares

    2016-01-01

    Introduction The aim was to evaluate three regions of reference (Björk, Modified Björk and mandibular Body) for mandibular registration testing them in a patients’ CBCT sample. Methods Mandibular 3D volumetric label maps were built from CBCTs taken before (T1) and after treatment (T2) in a sample of 16 growing subjects and labeled with eight landmarks. Registrations of T1 and T2 images relative to the different regions of reference were performed, and 3D surface models were generated. Seven mandibular dimensions were measured separately for each time-point (T1 and T2) in relation to a stable reference structure (lingual cortical of symphysis), and the T2-T1 differences were calculated. These differences were compared to differences measured between the superimposed T2 (generated from different regions of reference: Björk, Modified Björk and Mandibular Body) over T1 surface models. ICC and the Bland-Altman method tested the agreement of the changes obtained by nonsuperimposition measurements from the patients’ sample, and changes between the overlapped surfaces after registration using the different regions of reference. Results The Björk region of reference (or mask) did work properly only in 2 of 16 patients. Evaluating the two other masks (Modified Björk and Mandibular body) on patients’ scans registration, the concordance and agreement of the changes obtained from superimpositions (registered T2 over T1) compared to results obtained from non superimposed T1 and T2 separately, indicated that Mandibular Body mask displayed more consistent results. Conclusions The mandibular body mask (mandible without teeth, alveolar bone, rami and condyles) is a reliable reference for 3D regional registration. PMID:27336366

  13. Towards Forward Modeling of 3D Heterogeneity in D" region

    NASA Astrophysics Data System (ADS)

    To, A.; Capdeville, Y.; Romanowicz, B.

    2002-12-01

    The presence of strong lateral heterogeneity in D" is now well documented. While tomographic modeling provides constraints on the large scale patterns, strong variations on shorter scales are best addressed by forward modeling. Appropriate tools are needed for forward modeling that will handle strong 3D heterogeneity, at relatively short periods and including diffracted waves. We use a coupled mode/SEM (Spectral Element Method) to compute synthetic seismograms in 3D models of the D" layer down to 1/12s. This coupled method (Capdeville, 2001) affords faster computations than SEM in cases where heterogeneity can be restricted to a specific layer. We compare them with observed waveforms for several events in the Western Pacific. Observed and synthetic travel time trends are very consistent, although in most cases the observed residuals are significantly larger. Waveform amplitudes are less consistent. In order to understand the origin of the amplitude difference, we test the effect of 3D heterogeneity on Sdiff phase. In particular, the results show opposite trends in the amplitude of Sdiff due to heterogeneity located near the CMB or well above it. This provides constraints on the location of the causative velocity heterogeneity. Because the forward modeling approach requires many iterations, the coupled mode/SEM approach is still computationally intensive. It is more efficient to use a less accurate traditional approach to first get closer to a final model, and only then use coupled mode/SEM to refine the model. Ray theory is the most expedient way to calculate travel times. However, it is an infinite frequency approximation and not appropriate to handle diffracting waves. We show that ray theory predicts larger travel time anomaly for Sdiff phase than the one obtained by coupled mode/SEM. Although it is based on a weak heterogeneity assumption, Non-linear Asymptotic Coupling Theory(NACT) (Li and Romanowicz, 1995) helps to overcome this difficulty. It can handle

  14. Optical 3D Nano-fabrication: Drawing or Growing? (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Kawata, Satoshi

    2016-05-01

    Conventional nanotechnology based on the lithography and scanning probe microscopy is limited to 2D fabrication and modification. Here, I will talk about the method for 3D laser fabrication with two-photon polymerization [1], two-photon isomerization [2], and two-photon photo-reduction [3]. Self-growth technology, such as self-grown fiber structures of polymer [4] and self-grown metallic fractal metamaterials structures [5] will be also discussed. [1] S. Kawata, et. al, Nature 412, 697-698, 2001. [2] S. Kawata and Y. Kawata, Chem Rev. 88, 083110, 2006. [3] Y. -Y. Cao, et. al., Small 5, 1144-1148, 2009 [4] S. Shoji and S. Kawata, Appl. Phys. Lett. 75, 737-739, 1999. [5] N. Takeyasu, N. Nishimura, S. Kawata, submitted.

  15. Effect of high magnetic field on a quasi-3D silver dendrite growing system

    NASA Astrophysics Data System (ADS)

    Tang, Fengzhi; Katsuki, Akio; Tanimoto, Yoshifumi

    2006-05-01

    The Ag+/Cu liquid-solid redox reaction was investigated in a vertical and inhomogeneous high magnetic field (up to 15 T). According to a comparison between the morphologies of quasi-3D silver dendrites generated under different magnetic flux densities, the imposition of a high magnetic field strongly affected the aggregation process of the silver dendrites. The present experiment used four kinds of liquid-solid boundaries, which are affected by the reaction direction and solution condition, as bases for the diffusion limited aggregation (DLA)-like dendritic growth of silver deposition. Results are interpreted in terms of convections of the aqueous solution and a tentative quantitative analysis of forces acting on particles arising from the magnetic field. A new force is predicted theoretically and is discussed in detail.

  16. Complex 3D crustal model of Asia region

    NASA Astrophysics Data System (ADS)

    Baranov, A. A.

    2009-04-01

    The Southern and Central Asia is tectonically complex region with great collision between Asian and Indian plates and its evolution is strongly related to the active subduction along the Pacific border. Previous global crustal model (CRUST 2.0.) for Asia region have resolution 2x2 degree. Model AsCRUST-08 (Baranov et al., 2008) of Central and Southern Asia with resolution of 1x1 degree was sufficiently improved in several regions and we built integrated model of the crust for Asia region. Also we add several regions in North Eurasia as Mongolia, Kazahstan and others. For such regions as Red and Dead sea, Northern China, Southern India we built regional maps with more detailed resolution. It was used data of deep seismic reflection, refraction and receiver functions studies from published papers. The existing data were verified and crosschecked. As the first result, we demonstrate a new Moho map for the region. The complex crustal model consists of three layers: upper, middle and lower crust. Besides depth to the boundaries, we provide average P-wave velocities in the upper, middle and lower parts of the crystalline crust. Limits for Vp velocities are: for upper crust 5.5-6.2 km/s, for middle 6.0-6.6 km/s, for lower crust 6.6-7.5km/s. Also we recalculated seismic P velocity data to density in crustal layers using rheology properties and geology data. Conclusions: Moho map and the velocity structure of the crust are much more heterogeneous than in previous maps CRUST 2.0. (Bassin et al., 2000), and CRUST 5.1. (Mooney et al., 1998). Our model offers a starting point for numerical modeling of deep structures by allowing correction for crustal effects beforehand and to resolve trade-off with mantle heterogeneities. This model will be used as a starting point in the gravity modeling of the lithosphere and mantle structure. [1] A. Baranov et al., First steps towards a new crustal model of South and Central Asia , Geophysical Research Abstracts, Vol. 10, EGU2008-A-05313

  17. Implementation of wireless 3D stereo image capture system and 3D exaggeration algorithm for the region of interest

    NASA Astrophysics Data System (ADS)

    Ham, Woonchul; Song, Chulgyu; Lee, Kangsan; Badarch, Luubaatar

    2015-05-01

    In this paper, we introduce the mobile embedded system implemented for capturing stereo image based on two CMOS camera module. We use WinCE as an operating system and capture the stereo image by using device driver for CMOS camera interface and Direct Draw API functions. We aslo comments on the GPU hardware and CUDA programming for implementation of 3D exaggeraion algorithm for ROI by adjusting and synthesizing the disparity value of ROI (region of interest) in real time. We comment on the pattern of aperture for deblurring of CMOS camera module based on the Kirchhoff diffraction formula and clarify the reason why we can get more sharp and clear image by blocking some portion of aperture or geometric sampling. Synthesized stereo image is real time monitored on the shutter glass type three-dimensional LCD monitor and disparity values of each segment are analyzed to prove the validness of emphasizing effect of ROI.

  18. Regional 3D superimposition to assess temporomandibular joint condylar morphology

    PubMed Central

    Schilling, J; Gomes, L C R; Benavides, E; Nguyen, T; Paniagua, B; Styner, M; Boen, V; Gonçalves, J R; Cevidanes, L H S

    2014-01-01

    Objectives: To investigate the reliability of regional three-dimensional registration and superimposition methods for assessment of temporomandibular joint condylar morphology across subjects and longitudinally. Methods: The sample consisted of cone beam CT scans of 36 patients. The across-subject comparisons included 12 controls, mean age 41.3 ± 12.0 years, and 12 patients with temporomandibular joint osteoarthritis, mean age 41.3 ± 14.7 years. The individual longitudinal assessments included 12 patients with temporomandibular joint osteoarthritis, mean age 37.8 ± 16.7 years, followed up at pre-operative jaw surgery, immediately after and one-year post-operative. Surface models of all condyles were constructed from the cone beam CT scans. Two previously calibrated observers independently performed all registration methods. A landmark-based approach was used for the registration of across-subject condylar models, and temporomandibular joint osteoarthritis vs control group differences were computed with shape analysis. A voxel-based approach was used for registration of longitudinal scans calculated x, y, z degrees of freedom for translation and rotation. Two-way random intraclass correlation coefficients tested the interobserver reliability. Results: Statistically significant differences between the control group and the osteoarthritis group were consistently located on the lateral and medial poles for both observers. The interobserver differences were ≤0.2 mm. For individual longitudinal comparisons, the mean interobserver differences were ≤0.6 mm in translation errors and 1.2° in rotation errors, with excellent reliability (intraclass correlation coefficient >0.75). Conclusions: Condylar registration for across-subjects and longitudinal assessments is reliable and can be used to quantify subtle bony differences in the three-dimensional condylar morphology. PMID:24170802

  19. Quantitative 3D Analysis of Plant Roots Growing in Soil Using Magnetic Resonance Imaging.

    PubMed

    van Dusschoten, Dagmar; Metzner, Ralf; Kochs, Johannes; Postma, Johannes A; Pflugfelder, Daniel; Bühler, Jonas; Schurr, Ulrich; Jahnke, Siegfried

    2016-03-01

    Precise measurements of root system architecture traits are an important requirement for plant phenotyping. Most of the current methods for analyzing root growth require either artificial growing conditions (e.g. hydroponics), are severely restricted in the fraction of roots detectable (e.g. rhizotrons), or are destructive (e.g. soil coring). On the other hand, modalities such as magnetic resonance imaging (MRI) are noninvasive and allow high-quality three-dimensional imaging of roots in soil. Here, we present a plant root imaging and analysis pipeline using MRI together with an advanced image visualization and analysis software toolbox named NMRooting. Pots up to 117 mm in diameter and 800 mm in height can be measured with the 4.7 T MRI instrument used here. For 1.5 l pots (81 mm diameter, 300 mm high), a fully automated system was developed enabling measurement of up to 18 pots per day. The most important root traits that can be nondestructively monitored over time are root mass, length, diameter, tip number, and growth angles (in two-dimensional polar coordinates) and spatial distribution. Various validation measurements for these traits were performed, showing that roots down to a diameter range between 200 μm and 300 μm can be quantitatively measured. Root fresh weight correlates linearly with root mass determined by MRI. We demonstrate the capabilities of MRI and the dedicated imaging pipeline in experimental series performed on soil-grown maize (Zea mays) and barley (Hordeum vulgare) plants. PMID:26729797

  20. Quantitative 3D Analysis of Plant Roots Growing in Soil Using Magnetic Resonance Imaging1[OPEN

    PubMed Central

    Kochs, Johannes; Pflugfelder, Daniel

    2016-01-01

    Precise measurements of root system architecture traits are an important requirement for plant phenotyping. Most of the current methods for analyzing root growth require either artificial growing conditions (e.g. hydroponics), are severely restricted in the fraction of roots detectable (e.g. rhizotrons), or are destructive (e.g. soil coring). On the other hand, modalities such as magnetic resonance imaging (MRI) are noninvasive and allow high-quality three-dimensional imaging of roots in soil. Here, we present a plant root imaging and analysis pipeline using MRI together with an advanced image visualization and analysis software toolbox named NMRooting. Pots up to 117 mm in diameter and 800 mm in height can be measured with the 4.7 T MRI instrument used here. For 1.5 l pots (81 mm diameter, 300 mm high), a fully automated system was developed enabling measurement of up to 18 pots per day. The most important root traits that can be nondestructively monitored over time are root mass, length, diameter, tip number, and growth angles (in two-dimensional polar coordinates) and spatial distribution. Various validation measurements for these traits were performed, showing that roots down to a diameter range between 200 μm and 300 μm can be quantitatively measured. Root fresh weight correlates linearly with root mass determined by MRI. We demonstrate the capabilities of MRI and the dedicated imaging pipeline in experimental series performed on soil-grown maize (Zea mays) and barley (Hordeum vulgare) plants. PMID:26729797

  1. Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants.

    PubMed

    Piñeros, Miguel A; Larson, Brandon G; Shaff, Jon E; Schneider, David J; Falcão, Alexandre Xavier; Yuan, Lixing; Clark, Randy T; Craft, Eric J; Davis, Tyler W; Pradier, Pierre-Luc; Shaw, Nathanael M; Assaranurak, Ithipong; McCouch, Susan R; Sturrock, Craig; Bennett, Malcolm; Kochian, Leon V

    2016-03-01

    A plant's ability to maintain or improve its yield under limiting conditions, such as nutrient deficiency or drought, can be strongly influenced by root system architecture (RSA), the three-dimensional distribution of the different root types in the soil. The ability to image, track and quantify these root system attributes in a dynamic fashion is a useful tool in assessing desirable genetic and physiological root traits. Recent advances in imaging technology and phenotyping software have resulted in substantive progress in describing and quantifying RSA. We have designed a hydroponic growth system which retains the three-dimensional RSA of the plant root system, while allowing for aeration, solution replenishment and the imposition of nutrient treatments, as well as high-quality imaging of the root system. The simplicity and flexibility of the system allows for modifications tailored to the RSA of different crop species and improved throughput. This paper details the recent improvements and innovations in our root growth and imaging system which allows for greater image sensitivity (detection of fine roots and other root details), higher efficiency, and a broad array of growing conditions for plants that more closely mimic those found under field conditions. PMID:26683583

  2. Approximate analytic solutions to 3D unconfined groundwater flow within regional 2D models

    NASA Astrophysics Data System (ADS)

    Luther, K.; Haitjema, H. M.

    2000-04-01

    We present methods for finding approximate analytic solutions to three-dimensional (3D) unconfined steady state groundwater flow near partially penetrating and horizontal wells, and for combining those solutions with regional two-dimensional (2D) models. The 3D solutions use distributed singularities (analytic elements) to enforce boundary conditions on the phreatic surface and seepage faces at vertical wells, and to maintain fixed-head boundary conditions, obtained from the 2D model, at the perimeter of the 3D model. The approximate 3D solutions are analytic (continuous and differentiable) everywhere, including on the phreatic surface itself. While continuity of flow is satisfied exactly in the infinite 3D flow domain, water balance errors can occur across the phreatic surface.

  3. Parallelized Seeded Region Growing Using CUDA

    PubMed Central

    Park, Seongjin; Lee, Hyunna; Seo, Jinwook; Lee, Kyoung Ho; Shin, Yeong-Gil; Kim, Bohyoung

    2014-01-01

    This paper presents a novel method for parallelizing the seeded region growing (SRG) algorithm using Compute Unified Device Architecture (CUDA) technology, with intention to overcome the theoretical weakness of SRG algorithm of its computation time being directly proportional to the size of a segmented region. The segmentation performance of the proposed CUDA-based SRG is compared with SRG implementations on single-core CPUs, quad-core CPUs, and shader language programming, using synthetic datasets and 20 body CT scans. Based on the experimental results, the CUDA-based SRG outperforms the other three implementations, advocating that it can substantially assist the segmentation during massive CT screening tests. PMID:25309619

  4. 3D intrathoracic region definition and its application to PET-CT analysis

    NASA Astrophysics Data System (ADS)

    Cheirsilp, Ronnarit; Bascom, Rebecca; Allen, Thomas W.; Higgins, William E.

    2014-03-01

    Recently developed integrated PET-CT scanners give co-registered multimodal data sets that offer complementary three-dimensional (3D) digital images of the chest. PET (positron emission tomography) imaging gives highly specific functional information of suspect cancer sites, while CT (X-ray computed tomography) gives associated anatomical detail. Because the 3D CT and PET scans generally span the body from the eyes to the knees, accurate definition of the intrathoracic region is vital for focusing attention to the central-chest region. In this way, diagnostically important regions of interest (ROIs), such as central-chest lymph nodes and cancer nodules, can be more efficiently isolated. We propose a method for automatic segmentation of the intrathoracic region from a given co-registered 3D PET-CT study. Using the 3D CT scan as input, the method begins by finding an initial intrathoracic region boundary for a given 2D CT section. Next, active contour analysis, driven by a cost function depending on local image gradient, gradient-direction, and contour shape features, iteratively estimates the contours spanning the intrathoracic region on neighboring 2D CT sections. This process continues until the complete region is defined. We next present an interactive system that employs the segmentation method for focused 3D PET-CT chest image analysis. A validation study over a series of PET-CT studies reveals that the segmentation method gives a Dice index accuracy of less than 98%. In addition, further results demonstrate the utility of the method for focused 3D PET-CT chest image analysis, ROI definition, and visualization.

  5. [Ever growing regional differences in population numbers].

    PubMed

    Van Hoorn, W D

    1995-02-01

    "The most urbanized provinces of the Netherlands are North-Holland, South-Holland and Utrecht. In these provinces, the population density (number of inhabitants per square kilometer of land) is five times that of the Northern provinces and Zeeland.... According to the Regional Population Forecasts 1994, up to 2015 all the provinces are expected to have a positive population growth. The population of the youngest province Flevoland will grow most rapidly: by about 50%. The population growth, both in relative and absolute terms, will be small in the Northern provinces and Zeeland (in the South West)." (SUMMARY IN ENG) PMID:12346255

  6. A New Regional 3-D Velocity Model of the India-Pakistan Region for Improved Event Location Accuracy

    NASA Astrophysics Data System (ADS)

    Reiter, D.; Vincent, C.; Johnson, M.

    2001-05-01

    A 3-D velocity model for the crust and upper mantle (WINPAK3D) has been developed to improve regional event location in the India-Pakistan region. Results of extensive testing demonstrate that the model improves location accuracy for this region, specifically for the case of small regionally recorded events, for which teleseismic data may not be available. The model was developed by integrating the results of more than sixty previous studies related to crustal velocity structure in the region. We evaluated the validity of the 3-D model using the following methods: (1) cross validation analysis for a variety of events, (2) comparison of model determined hypocenters with known event location, and (3) comparison of model-derived and empirically-derived source-specific station corrections (SSSC) generated for the International Monitoring System (IMS) auxiliary seismic station located at Nilore. The 3-D model provides significant improvement in regional location compared to both global and regional 1-D models in this area of complex structural variability. For example, the epicenter mislocation for an event with a well known location was only 6.4 km using the 3-D model, compared with a mislocation of 13.0 km using an average regional 1-D model and 15.1 km for the IASPEI91 model. We will present these and other results to demonstrate that 3-D velocity models are essential to improving event location accuracy in regions with complicated crustal geology and structures. Such 3-D models will be a prerequisite for achieving improved location accuracies for regions of high monitoring interest.

  7. 3D Airborne Electromagnetic Inversion: A case study from the Musgrave Region, South Australia

    NASA Astrophysics Data System (ADS)

    Cox, L. H.; Wilson, G. A.; Zhdanov, M. S.; Sunwall, D. A.

    2012-12-01

    Geophysicists know and accept that geology is inherently 3D, and is resultant from complex, overlapping processes related to genesis, metamorphism, deformation, alteration, weathering, and/or hydrogeology. Yet, the geophysics community has long relied on qualitative analysis, conductivity depth imaging (CDIs), 1D inversion, and/or plate modeling. There are many reasons for this deficiency, not the least of which has been the lack of capacity for historic 3D AEM inversion algorithms to invert entire surveys so as to practically affect exploration decisions. Our recent introduction of a moving sensitivity domain (footprint) methodology has been a paradigm shift in AEM interpretation. The basis of this method is that one needs only to calculate the responses and sensitivities for that part of the 3D earth model that is within the AEM system's sensitivity domain (footprint), and then superimpose all sensitivity domains into a single, sparse sensitivity matrix for the entire 3D earth model which is then updated in a regularized inversion scheme. This has made it practical to rigorously invert entire surveys with thousands of line kilometers of AEM data to mega-cell 3D models in hours using multi-processor workstations. Since 2010, over eighty individual projects have been completed for Aerodat, AEROTEM, DIGHEM, GEOTEM, HELITEM, HoisTEM, MEGATEM, RepTEM, RESOLVE, SkyTEM, SPECTREM, TEMPEST, and VTEM data from Australia, Brazil, Canada, Finland, Ghana, Peru, Tanzania, the US, and Zambia. Examples of 3D AEM inversion have been published for a variety of applications, including mineral exploration, oil sands exploration, salinity, permafrost, and bathymetry mapping. In this paper, we present a comparison of 3D inversions for SkyTEM, SPECTREM, TEMPET and VTEM data acquired over the same area in the Musgrave region of South Australia for exploration under cover.

  8. 3-D P Wave Velocity Structure of Marmara Region Using Local Earthquake Tomography

    NASA Astrophysics Data System (ADS)

    Işık, S. E.; Gurbuz, C.

    2014-12-01

    The 3D P wave velocity model of upper and lower crust of the Marmara Region between 40.200- 41.200N and 26.500- 30.500E is obtained by tomographic inversion (Simulps) of 47034 P wave arrivals of local earthquakes recorded at 90 land stations between October 2009 and December 2012 and 30 OBO stations and 14162 shot arrivals recorded at 35 OBO stations (Seismarmara Survey, 2001). We first obtained a 1D minimum model with Velest code in order to obtain an initial model for 3D inversion with 648 well located earthquakes located within the study area. After several 3D inversion trials we decided to create a more adequate initial model for 3D inversion. Choosing the initial model we estimated the 3D P wave velocity model representing the whole region both for land and sea. The results are tested by making Checkerboard , Restoring Resolution and Characteristic Tests, and the reliable areas of the resulting model is defined in terms of RDE, DWS, SF and Hit count distributions. By taking cross sections from the resulting model we observed the vertical velocity change along profiles crossing both land and sea. All the profiles crossing the basins showed that the high velocities of lower crust make extensions towards the basin area which looks like the force that gives a shape to the basins. These extensions of lower crust towards the basins appeared with an average velocity of 6.3 km/s which might be the result of the deformation due the shearing in the region. It is also interpreted that the development of these high velocities coincide with the development of the basins. Thus, both the basins and the high velocity zones around them might be resulted from the entrance of the NAF into the Marmara Sea and at the same time a shear regime was dominated due to the resistance of the northern Marmara Region (Yılmaz, 2010). The seismicity is observed between 5 km and 15 km after the 3D location of the earthquakes. The locations of the earthquakes improved and the seismogenic zone

  9. Exome-Scale Discovery of Hotspot Mutation Regions in Human Cancer Using 3D Protein Structure.

    PubMed

    Tokheim, Collin; Bhattacharya, Rohit; Niknafs, Noushin; Gygax, Derek M; Kim, Rick; Ryan, Michael; Masica, David L; Karchin, Rachel

    2016-07-01

    The impact of somatic missense mutation on cancer etiology and progression is often difficult to interpret. One common approach for assessing the contribution of missense mutations in carcinogenesis is to identify genes mutated with statistically nonrandom frequencies. Even given the large number of sequenced cancer samples currently available, this approach remains underpowered to detect drivers, particularly in less studied cancer types. Alternative statistical and bioinformatic approaches are needed. One approach to increase power is to focus on localized regions of increased missense mutation density or hotspot regions, rather than a whole gene or protein domain. Detecting missense mutation hotspot regions in three-dimensional (3D) protein structure may also be beneficial because linear sequence alone does not fully describe the biologically relevant organization of codons. Here, we present a novel and statistically rigorous algorithm for detecting missense mutation hotspot regions in 3D protein structures. We analyzed approximately 3 × 10(5) mutations from The Cancer Genome Atlas (TCGA) and identified 216 tumor-type-specific hotspot regions. In addition to experimentally determined protein structures, we considered high-quality structural models, which increase genomic coverage from approximately 5,000 to more than 15,000 genes. We provide new evidence that 3D mutation analysis has unique advantages. It enables discovery of hotspot regions in many more genes than previously shown and increases sensitivity to hotspot regions in tumor suppressor genes (TSG). Although hotspot regions have long been known to exist in both TSGs and oncogenes, we provide the first report that they have different characteristic properties in the two types of driver genes. We show how cancer researchers can use our results to link 3D protein structure and the biologic functions of missense mutations in cancer, and to generate testable hypotheses about driver mechanisms. Our results

  10. Ground motion simulations in Marmara (Turkey) region from 3D finite difference method

    NASA Astrophysics Data System (ADS)

    Aochi, Hideo; Ulrich, Thomas; Douglas, John

    2016-04-01

    In the framework of the European project MARSite (2012-2016), one of the main contributions from our research team was to provide ground-motion simulations for the Marmara region from various earthquake source scenarios. We adopted a 3D finite difference code, taking into account the 3D structure around the Sea of Marmara (including the bathymetry) and the sea layer. We simulated two moderate earthquakes (about Mw4.5) and found that the 3D structure improves significantly the waveforms compared to the 1D layer model. Simulations were carried out for different earthquakes (moderate point sources and large finite sources) in order to provide shake maps (Aochi and Ulrich, BSSA, 2015), to study the variability of ground-motion parameters (Douglas & Aochi, BSSA, 2016) as well as to provide synthetic seismograms for the blind inversion tests (Diao et al., GJI, 2016). The results are also planned to be integrated in broadband ground-motion simulations, tsunamis generation and simulations of triggered landslides (in progress by different partners). The simulations are freely shared among the partners via the internet and the visualization of the results is diffused on the project's homepage. All these simulations should be seen as a reference for this region, as they are based on the latest knowledge that obtained during the MARSite project, although their refinement and validation of the model parameters and the simulations are a continuing research task relying on continuing observations. The numerical code used, the models and the simulations are available on demand.

  11. Incorporating Edge Information into Best Merge Region-Growing Segmentation

    NASA Technical Reports Server (NTRS)

    Tilton, James C.; Pasolli, Edoardo

    2014-01-01

    We have previously developed a best merge region-growing approach that integrates nonadjacent region object aggregation with the neighboring region merge process usually employed in region growing segmentation approaches. This approach has been named HSeg, because it provides a hierarchical set of image segmentation results. Up to this point, HSeg considered only global region feature information in the region growing decision process. We present here three new versions of HSeg that include local edge information into the region growing decision process at different levels of rigor. We then compare the effectiveness and processing times of these new versions HSeg with each other and with the original version of HSeg.

  12. 3D Modeling of Forbidden Line Emission in the Binary Wind Interaction Region of Eta Carinae

    NASA Technical Reports Server (NTRS)

    Madura, Thomas; Gull, T. R.; Owocki, S.; Okazaki, A. T.; Russell, C. M. P.

    2010-01-01

    We present recent work using three-dimensional (3D) Smoothed Particle Hydrodynamics (SPH) simulations to model the high ([Fe III], [Ar III], [Ne III] and [S III]) and low ([Fe II], [Ni II]) ionization forbidden emission lines observed in Eta Carinae using the HST/STIS. These structures are interpreted as the time-averaged, outer extensions of the primary wind and the wind-wind interaction region directly excited by the FUV of the hot companion star of this massive binary system. We discuss how analyzing the results of the 3D SPH simulations and synthetic slit spectra and comparing them to the spectra obtained with the HST/STIS helps us determine the absolute orientation of the binary orbit and helps remove the degeneracy inherent to models based solely on the observed RXTE X-ray light curve. A key point of this work is that spatially resolved observations like those with HST/STIS and comparison to 3D models are necessary to determine the alignment or misalignment of the orbital angular momentum axis with the Homunculus, or correspondingly, the alignment of the orbital plane with the Homunculus skirt.

  13. Building 3D geological knowledge through regional scale gravity modelling for the Bowen Basin

    NASA Astrophysics Data System (ADS)

    Danis, Cara; O'Neill, Craig; Lackie, Mark

    2012-01-01

    Regional scale gravity modelling is an effective and fast way to gain geological understanding of large scale structures like the Bowen Basin. Detailed deep 3D geological knowledge has become an important component of many types of exploration and resource modelling. Current interest in the Bowen Basin for geothermal exploration highlights the need for a complete basin scale model which is compatible with thermal modelling software. The structure of the Bowen Basin is characteristic of a typical asymmetrical extensional rift basin, with up to 5km of sediment overlying the basement. By combining gravity modelling, calibrated by boreholes and seismic reflection profiles, we produce geologically reasonable 3D surfaces and structures to create a model of the Bowen Basin. This model is the final part in the completion of the 3D Sydney-Gunnedah-Bowen Basin system geological model and provides both an important framework from which detailed thermal models can be derived and a platform from which to expand with new information.

  14. Development of a Regional Velocity Model Using 3D Broadband Waveform Sensitivity

    NASA Astrophysics Data System (ADS)

    Panning, M. P.; Romanowicz, B. A.; Kim, A.

    2005-12-01

    We are developing a new approach which relies on a cascade of increasingly accurate theoretical approximations for computation of the seismic wavefield to develop a model of regional seismic velocity structure for eastern Eurasia using full seismic waveforms. The selected area is particularly suitable for the purpose of this experiment, as it is highly heterogeneous, presenting a challenge for standard modeling techniques, but it is well surrounded by earthquake sources and a significant number of high quality broadband digital stations exist, for which data are readily accessible through IRIS (Incorporated Research Institutions for Seismology) and the FDSN (Federation of Digital Seismic Networks). The initial model is derived from a large database of teleseismic long period waveforms (surface waves and overtone wavepackets) using well-developed theoretical approximations, the Path Average Approximation (PAVA) and Nonlinear Asymptotic Coupling Theory (NACT). These approaches assume waveforms are only sensitive to the 1D (PAVA) and 2D (NACT) structure in the vertical plane between source and receiver, which is adequate for the development of a smooth initial 3D velocity model. We refine this model using a more accurate theoretical approach. We utilize an implementation of a 3D Born approximation, which takes into account the contribution to the waveform from single scattering throughout the model, giving full 3D waveform sensitivity kernels. We perform verification tests of this approach for synthetic models, and show that it can accurately represent the wavefield as predicted by numerical approaches in several situations where approximations such as PAVA and NACT are insufficient. The Born 3D waveform sensitivity kernels are used to perform a higher resolution inversion of regional waveforms for a smaller subregion between longitudes 90 and 150 degrees E, and latitudes 15 and 40 degrees N. To further increase the accuracy of this model, we intend to utilize a very

  15. Centroid Moment Tensor Inversion in a 3D heterogeneous Earth: Application to the Australasian region

    NASA Astrophysics Data System (ADS)

    Hejrani, B.; Tkalcic, H.; Fichtner, A.

    2015-12-01

    Australia is surrounded by active complex tectonic belts causing significant seismicity. The recent expansion of permanent seismic networks in the Australasian region provides great opportunity to study Earth structure and a great variety of physical mechanisms responsible for earthquakes.On one hand, a better understanding of the Australasian lithosphere, which is now available through tomographic images from full waveform modelling (Fichtner et al. 2010), provides a powerful tool to scrutinize the determination of earthquake source parameters. Even at relatively long periods (40-200s), the 3D effects of regional structure were shown to significantly alter the global centroid moment tensor solutions (Hingee et al. 2012). Thus, we can now explore other types of uncertainties and test the accuracy of global centroid moment tensor (GCMT) solution for the earthquakes in the Australasian region while checking for the systematic inconsistencies in the solutions. This has a significant bearing on tectonic interpretations. For example, azimuth and plunge of fault planes can be investigated in search for systematic biases.On the other hand, the time has come to take a full advantage of the 3D Earth structural model and embrace ongoing advances in computational power and storage. We develop a semi-automated procedure to calculate the Centroid Moment Tensors in a 3D heterogeneous Earth. We utilize the reciprocity theorem to create Green's functions for point sources covering seismogenic zones of Australasia. We focus on improving the capacity of the method to fully complement the existing monitoring tools at Geosciences Australia. Furthermore, we investigate the effects of detailed velocity structure on Centroid location and double-couple percentages. Moreover Azimuth and Plunge of focal mechanisms in GCMT (Global CMT), were investigated in search for any systematic bias.References: Fichtner, A., Kennett, B.L.N., Igel, H., Bunge, H.-P., 2010. Full waveform tomography for

  16. 3D MRI brain image segmentation based on region restricted EM algorithm

    NASA Astrophysics Data System (ADS)

    Li, Zhong; Fan, Jianping

    2008-03-01

    This paper presents a novel algorithm of 3D human brain tissue segmentation and classification in magnetic resonance image (MRI) based on region restricted EM algorithm (RREM). The RREM is a level set segmentation method while the evolution of the contours was driven by the force field composed by the probability density functions of the Gaussian models. Each tissue is modeled by one or more Gaussian models restricted by free shaped contour so that the Gaussian models are adaptive to the local intensities. The RREM is guaranteed to be convergency and achieving the local minimum. The segmentation avoids to be trapped in the local minimum by the split and merge operation. A fuzzy rule based classifier finally groups the regions belonging to the same tissue and forms the segmented 3D image of white matter (WM) and gray matter (GM) which are of major interest in numerous applications. The presented method can be extended to segment brain images with tumor or the images having part of the brain removed with the adjusted classifier.

  17. Inter-point procrustes: identifying regional and large differences in 3D anatomical shapes.

    PubMed

    Lekadir, Karim; Frangi, Alejandro F; Yang, Guang-Zhong

    2012-01-01

    This paper presents a new approach for the robust alignment and interpretation of 3D anatomical structures with large and localized shape differences. In such situations, existing techniques based on the well-known Procrustes analysis can be significantly affected due to the introduced non-Gaussian distribution of the residuals. In the proposed technique, influential points that induce large dissimilarities are identified and displaced with the aim to obtain an intermediate template with an improved distribution of the residuals. The key element of the algorithm is the use of pose invariant shape variables to robustly guide both the influential point detection and displacement steps. The intermediate template is then used as the basis for the estimation of the final pose parameters between the source and destination shapes, enabling to effectively highlight the regional differences of interest. The validation using synthetic and real datasets of different morphologies demonstrates robustness up-to 50% regional differences and potential for shape classification. PMID:23286119

  18. Scaling laws of coronal loops compared to a 3D MHD model of an active region

    NASA Astrophysics Data System (ADS)

    Bourdin, Ph.-A.; Bingert, S.; Peter, H.

    2016-04-01

    Context. The structure and heating of coronal loops have been investigated for decades. Established scaling laws relate fundamental quantities like the loop apex temperature, pressure, length, and coronal heating. Aims: We test these scaling laws against a large-scale 3D magneto-hydrodynamics (MHD) model of the solar corona, which became feasible with current high-performance computing. Methods: We drove an active region simulation with photospheric observations and find strong similarities to the observed coronal loops in X-rays and extreme-ultraviolet (EUV) wavelength. A 3D reconstruction of stereoscopic observations shows that our model loops have a realistic spatial structure. We compared scaling laws to our model data extracted along an ensemble of field lines. Finally, we fit a new scaling law that represents hot loops and also cooler structures, which was not possible before based only on observations. Results: Our model data gives some support for scaling laws that were established for hot and EUV-emissive coronal loops. For the Rosner-Tucker-Vaiana (RTV) scaling law we find an offset to our model data, which can be explained by 1D considerations of a static loop with a constant heat input and conduction. With a fit to our model data we set up a new scaling law for the coronal heat input along magnetic field lines. Conclusions: RTV-like scaling laws were fitted to hot loops and therefore do not predict well the coronal heat input for cooler structures that are barely observable. The basic differences between 1D and self-consistent 3D modeling account for deviations between earlier scaling laws and ours. We also conclude that a heating mechanism by MHD-turbulent dissipation within a braided flux tube would heat the corona stronger than is consistent with our model corona.

  19. Synthetic 3D modeling of active regions and simulation of their multi-wavelength emission

    NASA Astrophysics Data System (ADS)

    Nita, Gelu M.; Fleishman, Gregory; Kuznetsov, Alexey A.; Loukitcheva, Maria A.; Viall, Nicholeen M.; Klimchuk, James A.; Gary, Dale E.

    2015-04-01

    To facilitate the study of solar active regions, we have created a synthetic modeling framework that combines 3D magnetic structures obtained from magnetic extrapolations with simplified 1D thermal models of the chromosphere, transition region, and corona. To handle, visualize, and use such synthetic data cubes to compute multi-wavelength emission maps and compare them with observations, we have undertaken a major enhancement of our simulation tools, GX_Simulator (ftp://sohoftp.nascom.nasa.gov/solarsoft/packages/gx_simulator/), developed earlier for modeling emission from flaring loops. The greatly enhanced, object-based architecture, which now runs on Windows, Mac, and UNIX platform, offers important new capabilities that include the ability to either import 3D density and temperature distribution models, or to assign to each individual voxel numerically defined coronal or chromospheric temperature and densities, or coronal Differential Emission Measure distributions. Due to these new capabilities, the GX_Simulator can now apply parametric heating models involving average properties of the magnetic field lines crossing a given voxel volume, as well as compute and investigate the spatial and spectral properties of radio (to be compared with VLA or EOVSA data), (sub-)millimeter (ALMA), EUV (AIA/SDO), and X-ray (RHESSI) emission calculated from the model. The application integrates shared-object libraries containing fast free-free, gyrosynchrotron, and gyroresonance emission codes developed in FORTRAN and C++, and soft and hard X-ray and EUV codes developed in IDL. We use this tool to model and analyze an active region and compare the synthetic emission maps obtained in different wavelengths with observations.This work was partially supported by NSF grants AGS-1250374, AGS-1262772, NASA grant NNX14AC87G, the Marie Curie International Research Staff Exchange Scheme "Radiosun" (PEOPLE-2011-IRSES-295272), RFBR grants 14-02-91157, 15-02-01089, 15-02-03717, 15

  20. The Relationship Between Human Nucleolar Organizer Regions and Nucleoli, Probed by 3D-ImmunoFISH.

    PubMed

    van Sluis, Marjolein; van Vuuren, Chelly; McStay, Brian

    2016-01-01

    3D-immunoFISH is a valuable technique to compare the localization of DNA sequences and proteins in cells where three-dimensional structure has been preserved. As nucleoli contain a multitude of protein factors dedicated to ribosome biogenesis and form around specific chromosomal loci, 3D-immunoFISH is a particularly relevant technique for their study. In human cells, nucleoli form around transcriptionally active ribosomal gene (rDNA) arrays termed nucleolar organizer regions (NORs) positioned on the p-arms of each of the acrocentric chromosomes. Here, we provide a protocol for fixing and permeabilizing human cells grown on microscope slides such that nucleolar proteins can be visualized using antibodies and NORs visualized by DNA FISH. Antibodies against UBF recognize transcriptionally active rDNA/NORs and NOP52 antibodies provide a convenient way of visualizing the nucleolar volume. We describe a probe designed to visualize rDNA and introduce a probe comprised of NOR distal sequences, which can be used to identify or count individual NORs. PMID:27576706

  1. 3D Modeling of the Massive Binary Wind Interaction Region in Eta Carinae

    NASA Astrophysics Data System (ADS)

    Madura, Thomas; Gull, T.; Owocki, S.; Okazaki, A.; Russell, C.

    2009-01-01

    We present recent work on the theoretical modeling of low excitation ([Fe II]) and high excitation ([Fe III]) wind lines observed in Eta Carinae using the HST/STIS. The spatially resolved structures seen in these lines are interpreted as the time-averaged, outer extensions of the wind from the primary star and the wind-wind interaction region of the massive binary system. For most of the orbit, the wind-wind interface can be approximated as a cone with a half-opening angle of 65° whose axis of rotation is aligned with the major axis of the binary orbit and appears to lie in the plane of the Homunculus disk. However, because the orbit is highly elliptical, this approximation breaks down at periastron and so full 3D Smoothed Particle Hydrodynamics (SPH) simulations become necessary. By analyzing the results of these 3D SPH simulations of the binary interactions and comparing them to the spectra obtained with the HST/STIS we place further constraints on the orientation of the binary orbit, and hope to eventually determine how/where UV light is escaping in the system, to search for any direct signatures of the companion star, and to ultimately establish a mass ratio for the system.

  2. Global Structure of Idealized Stream Interaction Regions Using 3D MHD Simulations

    NASA Astrophysics Data System (ADS)

    Pahud, D. M.; Hughes, W. J.; Merkin, V. G.

    2014-12-01

    The global structure of the heliosphere during solar cycles (SC) 23 and 24 differed significantly in many ways, for example in terms of global magnetic field strength, velocity structure and the observed properties of Stream Interaction Region (SIR) and associated shocks. The differences considered in this study focus primarily on the effects of the three-dimensional (3D) structure of SIRs. During the minimum of SC 24, equatorial coronal holes were prevalent as sources of low-latitude high-speed solar wind. In contrast, the canonical depiction of SC 23's minimum wind configuration is of a band of slow wind undulating about the heliographic equator. Using the heliospheric adaptation of the Lyon-Fedder-Mobarry magnetohydrodynamic (MHD) model (LFM-helio), we have run simulations for two idealized global solar wind conditions. The first simulation approximates the classical tilted dipole, with fast solar wind at high latitudes and a band of slow wind tilted with respect to the heliographic equator, and the second consists of global slow solar wind with equatorial circular sources of high-speed streams. The evolution of the SIRs from 0.1 AU to 2.0 AU is characterized using the amplitude and location of the maximum compressions of the plasma and the magnetic field as well as the largest deflection of solar wind flow. The relation between plasma and magnetic field compressions differs between the two cases considered. The SIRs produced by the equatorial coronal holes have similar maximum densities to those of the tilted dipole case, but the magnetic field magnitude is larger and the plasma is hotter. This suggests that evolution depends on the 3D structure of the SIR and its effects on the competitive roles of the growth of the structure, driven by compression from dynamic pressure, and and relaxation from the plasma flow and magnetic field deflections occurring in the region. Magnetic field threading SIRs and tracing plasma parcels are examined.

  3. 3D subduction modelling of the Betic-Rif Alboran region.

    NASA Astrophysics Data System (ADS)

    Chertova, M.; Geenen, T.; van den Berg, A. P.; Spakman, W.

    2012-04-01

    Our project is concerned with the 4D evolution of Western-Mediterranean region from ~30 Ma until the Present. Slab rollback and lithosphere tearing play an important role in the evolution of this region and affects the development of surface geology (Spakman and Wortel(1)). The project was started with 2D numerical simulations of self-consistent slab rollback for the different model setup. We investigate the influence of different boundary conditions (open boundaries versus closed boundaries), different domain size and different far-field generated intraplate stresses applied to the overriding plate on the subduction process. We have found that free slip implemented either on the both sides of the domain or on one side leads to results that are influenced by the boundary for any reasonable domain size. For the model with open boundary conditions such an influence is only observed in the magnitude of the velocity, which can be successfully scaled by an iterative procedure. Thereby, the model with open boundaries allows us to investigate the subduction dynamic process under conditions that are free from disturbing boundary influences. By being able to model the subduction process in a smaller domain size we significantly decrease computational expenses. Generally our research is now focused on 3D models. We start from the reconstruction of the subduction process in the Betic-Rif Alboran region. This region has a long and complicated subduction history, which consists of slab rollback, lithosphere detachment and tearing processes leading to a narrow curved subduction zone (Spakman and Wortel, 2004). So far analogue models failed to reconstruct such a high-curved structure. We have implemented and tested the open boundary conditions in a 3D setting, which allowed us to significantly decrease the domain size. Different initial plate tectonic settings and kinematic boundary conditions are now being tested in order to reconstruct this complex subduction process. Spakman

  4. Imaging of 3-D seismic velocity structure of Southern Sumatra region using double difference tomographic method

    SciTech Connect

    Lestari, Titik; Nugraha, Andri Dian

    2015-04-24

    Southern Sumatra region has a high level of seismicity due to the influence of the subduction system, Sumatra fault, Mentawai fault and stretching zone activities. The seismic activities of Southern Sumatra region are recorded by Meteorological Climatological and Geophysical Agency (MCGA’s) Seismograph network. In this study, we used earthquake data catalog compiled by MCGA for 3013 events from 10 seismic stations around Southern Sumatra region for time periods of April 2009 – April 2014 in order to invert for the 3-D seismic velocities structure (Vp, Vs, and Vp/Vs ratio). We applied double-difference seismic tomography method (tomoDD) to determine Vp, Vs and Vp/Vs ratio with hypocenter adjustment. For the inversion procedure, we started from the initial 1-D seismic velocity model of AK135 and constant Vp/Vs of 1.73. The synthetic travel time from source to receiver was calculated using ray pseudo-bending technique, while the main tomographic inversion was applied using LSQR method. The resolution model was evaluated using checkerboard test and Derivative Weigh Sum (DWS). Our preliminary results show low Vp and Vs anomalies region along Bukit Barisan which is may be associated with weak zone of Sumatran fault and migration of partial melted material. Low velocity anomalies at 30-50 km depth in the fore arc region may indicated the hydrous material circulation because the slab dehydration. We detected low seismic seismicity in the fore arc region that may be indicated as seismic gap. It is coincides contact zone of high and low velocity anomalies. And two large earthquakes (Jambi and Mentawai) also occurred at the contact of contrast velocity.

  5. Imaging of 3-D seismic velocity structure of Southern Sumatra region using double difference tomographic method

    NASA Astrophysics Data System (ADS)

    Lestari, Titik; Nugraha, Andri Dian

    2015-04-01

    Southern Sumatra region has a high level of seismicity due to the influence of the subduction system, Sumatra fault, Mentawai fault and stretching zone activities. The seismic activities of Southern Sumatra region are recorded by Meteorological Climatological and Geophysical Agency (MCGA's) Seismograph network. In this study, we used earthquake data catalog compiled by MCGA for 3013 events from 10 seismic stations around Southern Sumatra region for time periods of April 2009 - April 2014 in order to invert for the 3-D seismic velocities structure (Vp, Vs, and Vp/Vs ratio). We applied double-difference seismic tomography method (tomoDD) to determine Vp, Vs and Vp/Vs ratio with hypocenter adjustment. For the inversion procedure, we started from the initial 1-D seismic velocity model of AK135 and constant Vp/Vs of 1.73. The synthetic travel time from source to receiver was calculated using ray pseudo-bending technique, while the main tomographic inversion was applied using LSQR method. The resolution model was evaluated using checkerboard test and Derivative Weigh Sum (DWS). Our preliminary results show low Vp and Vs anomalies region along Bukit Barisan which is may be associated with weak zone of Sumatran fault and migration of partial melted material. Low velocity anomalies at 30-50 km depth in the fore arc region may indicated the hydrous material circulation because the slab dehydration. We detected low seismic seismicity in the fore arc region that may be indicated as seismic gap. It is coincides contact zone of high and low velocity anomalies. And two large earthquakes (Jambi and Mentawai) also occurred at the contact of contrast velocity.

  6. Protein-protein docking using region-based 3D Zernike descriptors

    PubMed Central

    2009-01-01

    Background Protein-protein interactions are a pivotal component of many biological processes and mediate a variety of functions. Knowing the tertiary structure of a protein complex is therefore essential for understanding the interaction mechanism. However, experimental techniques to solve the structure of the complex are often found to be difficult. To this end, computational protein-protein docking approaches can provide a useful alternative to address this issue. Prediction of docking conformations relies on methods that effectively capture shape features of the participating proteins while giving due consideration to conformational changes that may occur. Results We present a novel protein docking algorithm based on the use of 3D Zernike descriptors as regional features of molecular shape. The key motivation of using these descriptors is their invariance to transformation, in addition to a compact representation of local surface shape characteristics. Docking decoys are generated using geometric hashing, which are then ranked by a scoring function that incorporates a buried surface area and a novel geometric complementarity term based on normals associated with the 3D Zernike shape description. Our docking algorithm was tested on both bound and unbound cases in the ZDOCK benchmark 2.0 dataset. In 74% of the bound docking predictions, our method was able to find a near-native solution (interface C-αRMSD ≤ 2.5 Å) within the top 1000 ranks. For unbound docking, among the 60 complexes for which our algorithm returned at least one hit, 60% of the cases were ranked within the top 2000. Comparison with existing shape-based docking algorithms shows that our method has a better performance than the others in unbound docking while remaining competitive for bound docking cases. Conclusion We show for the first time that the 3D Zernike descriptors are adept in capturing shape complementarity at the protein-protein interface and useful for protein docking prediction

  7. Simultaneous inversion for 3D crustal and anisotropic lithospheric structure and regional hypocenters beneath Germany

    NASA Astrophysics Data System (ADS)

    Muench, Thomas; Koch, Manfred; Schlittenhardt, Jörg

    2010-05-01

    There is now ample evidence from both refraction seismic studies, done already a quarter century ago and from more recent local earthquake traveltime analysis of some of the authors above that large sections of the upper mantle underneath Europe and Germany, in particular, are anisotropic. Employing a modified version of the method of simultaneous inversion for structure and hypocenters (SSH) of the first author, including a priori known upper mantle anisotropy, the investigations of Song et al. [2001] and Song et al. [2004] by means of a 1D time-term analysis and a full 2D Pn anisotropic inversion of regional traveltime data are extended here to a full 3D SSH-inversion underneath Germany. Regional traveltimes from local events occurring between 1975 - 2003 are used which, after application of several selection criteria, results in ~1300 events with a total of ~30000 P- and S-phases for the SSH inversion. Because many of the recorded events appear to suffer from relatively poor hypocentral depth locations a full SSH analysis becomes an intricate undertaking. To alleviate the problem the SSH procedure is carried out in several incremental steps of increasing complexity. First of all improved vertically inhomogeneous velocity (1D) models are derived assuming an isotropic as well as an anisotropic upper mantle. In addition of a slightly better model fit for the anisotropic than for the isotropic model, the latter gives also a somewhat lower Pn-velocity of ~7.90 km/s, compared with ~8.0 km/s for the former. This indicates that inclusion of upper mantle anisotropy into the model is required to obtain physically reasonable Pn-velocities. The results for the P-velocity in the lower crustal layer of the model are less clear, as there appears to be some trade-off in the velocity of that layer and that of the upper mantle. During the course of this part of the study the 3D models have been increasingly refined, starting with a lateral discretization into 15 x 15 blocs

  8. Regional structural styles in the northeast Netherlands as expressed on 3-D data

    SciTech Connect

    Goeyenbier, H. )

    1993-09-01

    The northeast Netherlands areas is a highly prospective gas province, containing the Groningen gas field and a multitude of smaller fields. Some 40 three-dimensional (3-D) seismic surveys have been acquired over the last 10 yr. covering a major part of this 15,000-km[sup 2] area. These surveys have been combined for the first time on a Landmark workstation to produce time, depth, and horizon attribute maps from six important (overburden and reservoir) levels: base Tertiary, base Chalk, base Cretaceous, base Jurassic, top Zechstein and base Zechstein. The structural history was reconstructed by analyzing isopach maps of the various units in combination with dip extractions along the mapped horizons to outline the active fault trends. Isopach maps of the Tertiary, Chalk, and Lower Cretaceous sediments reveal the salt movement during this interval with depocenters in the Lauwerszee trough as a result of salt withdrawal and salt diapirism in the areas of structural weakness near existing fault trends. The dip maps at the base of these units show the en-echelon fault pattern and the presence of crestal collapse systems above the salt domes. A comparison between base Cretaceous and base Chalk isopach maps also highlights the presence of inverted Lower Cretaceous basins. By comparing the overburden fault trends with the pre-Zechstein pattern, late faults can be separated from older trends, which has helped the prediction of sealing faults. The regional 3-D data provide a powerful and unambiguous tool to unravel the structural history in the northeast Netherlands.

  9. Telomere-surrounding regions are transcription-permissive 3D nuclear compartments in human cells

    SciTech Connect

    Quina, Ana Sofia; Parreira, Leonor . E-mail: lparreir@igc.gulbenkian.pt

    2005-07-01

    Positioning of genes relative to nuclear heterochromatic compartments is thought to help regulate their transcriptional activity. Given that human subtelomeric regions are rich in highly expressed genes, we asked whether human telomeres are related to transcription-permissive nuclear compartments. To address this question, we investigated in the nuclei of normal human lymphocytes the spatial relations of two constitutively expressed genes (ACTB and RARA) and three nuclear transcripts (ACTB, IL2RA and TCRB) to telomeres and centromeres, as a function of gene activity and transcription levels. We observed that genes and gene transcripts locate close to telomere clusters and away from chromocenters upon activation of transcription. These findings, together with the observation that SC35 domains, which are enriched in pre-mRNA processing factors, are in close proximity to telomeres, indicate that telomere-neighboring regions are permissive to gene expression in human cells. Therefore, the associations of telomeres observed in the interphase nucleus might contribute, as opposed to chromocenters, for the establishment of transcription-permissive 3D nuclear compartments.

  10. Individual 3D region-of-interest atlas of the human brain: neural-network-based tissue classification with automatic training point extraction

    NASA Astrophysics Data System (ADS)

    Wagenknecht, Gudrun; Kaiser, Hans-Juergen; Obladen, Thorsten; Sabri, Osama; Buell, Udalrich

    2000-06-01

    The purpose of individual 3D region-of-interest atlas extraction is to automatically define anatomically meaningful regions in 3D MRI images for quantification of functional parameters (PET, SPECT: rMRGlu, rCBF). The first step of atlas extraction is to automatically classify brain tissue types into gray matter (GM), white matter (WM), cerebrospinal fluid (CSF), scalp/bone (SB) and background (BG). A feed-forward neural network with back-propagation training algorithm is used and compared to other numerical classifiers. It can be trained by a sample from the individual patient data set in question. Classification is done by a 'winner takes all' decision. Automatic extraction of a user-specified number of training points is done in a cross-sectional slice. Background separation is done by simple region growing. The most homogeneous voxels define the region for WM training point extraction (TPE). Non-white-matter and nonbackground regions are analyzed for GM and CSF training points. For SB TPE, the distance from the BG region is one feature. For each class, spatially uniformly distributed training points are extracted by a random generator from these regions. Simulated and real 3D MRI images are analyzed and error rates for TPE and classification calculated. The resulting class images can be analyzed for extraction of anatomical ROIs.

  11. Imaging 3D seismic velocity along the seismogenic zone of Algarve region (southern Portugal)

    NASA Astrophysics Data System (ADS)

    Rocha, João.; Bezzeghoud, Mourad; Caldeira, Bento; Dias, Nuno; Borges, José; Matias, Luís.; Dorbath, Catherine; Carrilho, Fernando

    2010-05-01

    The present seismic tomographic study is focused around Algarve region, in South of Portugal. To locate the seismic events and find the local velocity structure of epicentral area, the P and S arrival times at 38 stations are used. The data used in this study were obtained during the Algarve campaign which worked from January/2006 to July/2007. The preliminary estimate of origin times and hypocentral coordinates are determined by the Hypoinverse program. Linearized inversion procedure was applied to comprise the following two steps: 1) finding the minimum 1D velocity model using Velest and 2) simultaneous relocation of hypocenters and determination of local velocity structure. The velocity model we have reached is a 10 layer model which gave the lowest RMS, after several runnings of eight different velocity models that we used "a priori". The model parameterization assumes a continuous velocity field between 4.5 km/s and 7.0 km/s until 30 km depth. The earth structure is represented in 3D by velocity at discrete points, and velocity at any intervening point is determined by linear interpolation among the surrounding eight grid points. A preliminary analysis of the resolution capabilities of the dataset, based on the Derivative Weight Sum (DWS) distribution, shows that the velocity structure is better resolved in the West part of the region between the surface to15 km. The resulting tomographic image has a prominent low-velocity anomaly that shows a maximum decrease in P-wave velocity in the first 12 kms in the studied region. We also identified the occurrence of local seismic events of reduced magnitude not catalogued, in the neighbourhood of Almodôvar (low Alentejo). The spatial distribution of epicentres defines a NE-SW direction that coincides with the strike of the mapped geological faults of the region and issued from photo-interpretation. Is still expectable to refine the seismicity of the region of Almodôvar and establish more rigorously its role in the

  12. Segmentation of 3D holographic images using bivariate jointly distributed region snake

    NASA Astrophysics Data System (ADS)

    Daneshpanah, Mehdi; Javidi, Bahram

    2006-06-01

    In this paper, we describe the bivariate jointly distributed region snake method in segmentation of microorganisms in Single Exposure On- Line (SEOL) holographic microscopy images. 3D images of the microorganisms are digitally reconstructed and numerically focused from any arbitrary depth from a single recorded digital hologram without mechanical scanning. Living organisms are non-rigid and they vary in shape and size. Moreover, they often do not exhibit clear edges in digitally reconstructed SEOL holographic images. Thus, conventional segmentation techniques based on the edge map may fail to segment these images. However, SEOL holographic microscopy provides both magnitude and phase information of the sample specimen, which could be helpful in the segmentation process. In this paper, we present a statistical framework based on the joint probability distribution of magnitude and phase information of SEOL holographic microscopy images and maximum likelihood estimation of image probability density function parameters. An optimization criterion is computed by maximizing the likelihood function of the target support hypothesis. In addition, a simple stochastic algorithm has been adapted for carrying out the optimization, while several boosting techniques have been employed to enhance its performance. Finally, the proposed method is applied for segmentation of biological microorganisms in SEOL holographic images and the experimental results are presented.

  13. 3D liver segmentation using multiple region appearances and graph cuts

    SciTech Connect

    Peng, Jialin Zhang, Hongbo; Hu, Peijun; Lu, Fang; Kong, Dexing; Peng, Zhiyi

    2015-12-15

    Purpose: Efficient and accurate 3D liver segmentations from contrast-enhanced computed tomography (CT) images play an important role in therapeutic strategies for hepatic diseases. However, inhomogeneous appearances, ambiguous boundaries, and large variance in shape often make it a challenging task. The existence of liver abnormalities poses further difficulty. Despite the significant intensity difference, liver tumors should be segmented as part of the liver. This study aims to address these challenges, especially when the target livers contain subregions with distinct appearances. Methods: The authors propose a novel multiregion-appearance based approach with graph cuts to delineate the liver surface. For livers with multiple subregions, a geodesic distance based appearance selection scheme is introduced to utilize proper appearance constraint for each subregion. A special case of the proposed method, which uses only one appearance constraint to segment the liver, is also presented. The segmentation process is modeled with energy functions incorporating both boundary and region information. Rather than a simple fixed combination, an adaptive balancing weight is introduced and learned from training sets. The proposed method only calls initialization inside the liver surface. No additional constraints from user interaction are utilized. Results: The proposed method was validated on 50 3D CT images from three datasets, i.e., Medical Image Computing and Computer Assisted Intervention (MICCAI) training and testing set, and local dataset. On MICCAI testing set, the proposed method achieved a total score of 83.4 ± 3.1, outperforming nonexpert manual segmentation (average score of 75.0). When applying their method to MICCAI training set and local dataset, it yielded a mean Dice similarity coefficient (DSC) of 97.7% ± 0.5% and 97.5% ± 0.4%, respectively. These results demonstrated the accuracy of the method when applied to different computed tomography (CT) datasets

  14. 3D P and S Wave Velocity Structure and Tremor Locations in the Parkfield Region

    NASA Astrophysics Data System (ADS)

    Zeng, X.; Thurber, C. H.; Shelly, D. R.; Bennington, N. L.; Cochran, E. S.; Harrington, R. M.

    2014-12-01

    We have assembled a new dataset to refine the 3D seismic velocity model in the Parkfield region. The S arrivals from 184 earthquakes recorded by the Parkfield Experiment to Record MIcroseismicity and Tremor array (PERMIT) during 2010-2011 were picked by a new S wave picker, which is based on machine learning. 74 blasts have been assigned to four quarries, whose locations were identified with Google Earth. About 1000 P and S wave arrivals from these blasts at permanent seismic network were also incorporated. Low frequency earthquakes (LFEs) occurring within non-volcanic tremor (NVT) are valuable for improving the precision of NVT location and the seismic velocity model at greater depths. Based on previous work (Shelley and Hardebeck, 2010), waveforms of hundreds of LFEs in same family were stacked to improve signal qualify. In a previous study (McClement et al., 2013), stacked traces of more than 30 LFE families at the Parkfileld Array Seismic Observatory (PASO) have been picked. We expanded our work to include LFEs recorded by the PERMIT array. The time-frequency Phase Weight Stacking (tf-PWS) method was introduced to improve the stack quality, as direct stacking does not produce clear S-wave arrivals on the PERMIT stations. This technique uses the coherence of the instantaneous phase among the stacked signals to enhance the signal-to-noise ratio (SNR) of the stack. We found that it is extremely effective for picking LFE arrivals (Thurber et al., 2014). More than 500 P and about 1000 S arrivals from 58 LFE families were picked at the PERMIT and PASO arrays. Since the depths of LFEs are much deeper than earthquakes, we are able to extend model resolution to lower crustal depths. Both P and S wave velocity structure have been obtained with the tomoDD method. The result suggests that there is a low velocity zone (LVZ) in the lower crust and the location of the LVZ is consistent with the high conductivity zone beneath the southern segment of the Rinconada fault that

  15. 3-D Structure of the Moho Interface beneath South Korea from Regional Seismic Observations

    NASA Astrophysics Data System (ADS)

    Gritto, R.; Siegel, J.; Chan, W. C.

    2007-12-01

    The current project is concerned with the collection and processing of seismic waveform data to perform 3-D tomographic inversions and produce high-resolution 3-D crustal P- and S-wave velocity models for the South Korean peninsula. At present, we have analyzed and archived Korean Meteorological Administration (KMA) waveform data from 2001 through 2006 and mapped of the Moho discontinuity below South Korea. Phase arrival information from both, velocity and accelerometer sensors were collected. The analysis included 226 events throughout the region producing a total of 6,275 phase picks including Pg, Pn, Sg/Lg, and Sn phases. A total of 3,550 P-wave and 2,725 S-wave phases were identified. Using the combination of all available velocity and accelerometer data it was possible to estimate depth locations for 198 KMA events. The hypocenters were subsequently used to derive travel-time distance curves to appraise the quality of the travel-time picks. Static corrections were calculated for each seismic station within the KMA network to remove the effects of local inhomogeneities in the vicinity of each station. After applying static corrections to the observed travel-times, refracted P-wave phases along the Moho boundary were selected from the dataset to estimate the depth and topography of the Moho discontinuity beneath South Korea. In total, 526 Pn phases were collected from the KMA data with hypocentral distances from 130 km to over 650 km. The resulting Moho topography reveals a slightly undulating interface with a large-scale dip from north (31 km) to south (38 km) and a depth range from 32 km in the east to 39 km in the south-west. On a smaller scale, a more pronounced depression is evident in the south- central part of the mapped area, which opens to the south. The presented results are corroborated by other studies which mapped the Moho interface using surface-wave dispersion and receiver-function analysis. The present study is complementary to these earlier

  16. Determining the 3D Structure of the Corona Using Vertical Height Constraints on Observed Active Region Loops

    NASA Astrophysics Data System (ADS)

    Gary, G. Allen; Hu, Qiang; Lee, Jong Kwan; Aschwanden, Markus J.

    2014-10-01

    The corona associated with an active region is structured by high-temperature, magnetically dominated closed and open loops. The projected 2D geometry of these loops is captured in EUV filtergrams. In this study using SDO/AIA 171 Å filtergrams, we expand our previous method to derive the 3D structure of these loops, independent of heliostereoscopy. We employ an automated loop recognition scheme (Occult-2) and fit the extracted loops with 2D cubic Bézier splines. Utilizing SDO/HMI magnetograms, we extrapolate the magnetic field to obtain simple field models within a rectangular cuboid. Using these models, we minimize the misalignment angle with respect to Bézier control points to extend the splines to 3D (Gary, Hu, and Lee 2014). The derived Bézier control points give the 3D structure of the fitted loops. We demonstrate the process by deriving the position of 3D coronal loops in three active regions (AR 11117, AR 11158, and AR 11283). The numerical minimization process converges and produces 3D curves which are consistent with the height of the loop structures when the active region is seen on the limb. From this we conclude that the method can be important in both determining estimates of the 3D magnetic field structure and determining the best magnetic model among competing advanced magnetohydrodynamics or force-free magnetic-field computer simulations.

  17. Herbig-Haro jets in 3D: the HL/XZ Tauri region

    NASA Astrophysics Data System (ADS)

    Movsessian, T. A.; Magakian, T. Yu.; Bally, J.; Smith, M. D.; Moiseev, A. V.; Dodonov, S. N.

    2007-08-01

    Context: Jets and outflows from young stellar objects (YSOs) can be identified and traced through the distribution and structure of shocked emission-line features. To understand the formation of these regions requires kinematic data at high spectral resolution and with full spatial coverage. Aims: In this work, we investigate the environment of HL/XZ Tau, which contains a compact and very active nest of YSOs. We explore the kinematic properties of the close association of jets in this region and study the interaction of jets with the ambient medium, as well as the outflows with each other. Methods: We present scanning Fabry-Perót interferometry of the HL/XZ Tau region in Hα and [S ii] 6716 Å emission. We also measure the proper motions of the knots in the outflows, as derived from images obtained in 1997 and 2001, to achieve the full 3D kinematic picture. Results: Radial velocities of the HL Tau jet indicate a fast spine of low excitation surrounded by a slower sheared sheath of higher excitation. Proper motions range from 200-220 km s-1 in the HL Tau jet and are aligned within 10 degrees of the jet spine. In combination, the proper motions and radial velocities indicate that three outflows in this region may be interacting with each other. Evidence of an outflow associated with LkHα 358 is found, and we suggest it is a source of Herbig-Haro (HH) knots that lie to the southeast of HL Tau and HH 265. Conclusions: We conclude that the southern lobe of the XZ Tau wind disrupts the eastern lobe of the collimated outflow from LkHα 358. The jet emerging from HL Tau is deflected by the northern lobe of the wind from XZ Tau. We propose several probable explanations for the unusual structure of the HL Tau jet. It is plausible that the shocks in the jet spine are maintained by the ram pressure of a low-density crosswind from XZ Tau. The crosswind interacts to form a sheath of entrained gas. Based partly on observations collected with the 6 m telescope of the Special

  18. Region-Based 3d Surface Reconstruction Using Images Acquired by Low-Cost Unmanned Aerial Systems

    NASA Astrophysics Data System (ADS)

    Lari, Z.; Al-Rawabdeh, A.; He, F.; Habib, A.; El-Sheimy, N.

    2015-08-01

    Accurate 3D surface reconstruction of our environment has become essential for an unlimited number of emerging applications. In the past few years, Unmanned Aerial Systems (UAS) are evolving as low-cost and flexible platforms for geospatial data collection that could meet the needs of aforementioned application and overcome limitations of traditional airborne and terrestrial mobile mapping systems. Due to their payload restrictions, these systems usually include consumer-grade imaging and positioning sensor which will negatively impact the quality of the collected geospatial data and reconstructed surfaces. Therefore, new surface reconstruction surfaces are needed to mitigate the impact of using low-cost sensors on the final products. To date, different approaches have been proposed to for 3D surface construction using overlapping images collected by imaging sensor mounted on moving platforms. In these approaches, 3D surfaces are mainly reconstructed based on dense matching techniques. However, generated 3D point clouds might not accurately represent the scanned surfaces due to point density variations and edge preservation problems. In order to resolve these problems, a new region-based 3D surface renostruction trchnique is introduced in this paper. This approach aims to generate a 3D photo-realistic model of individually scanned surfaces within the captured images. This approach is initiated by a Semi-Global dense Matching procedure is carried out to generate a 3D point cloud from the scanned area within the collected images. The generated point cloud is then segmented to extract individual planar surfaces. Finally, a novel region-based texturing technique is implemented for photorealistic reconstruction of the extracted planar surfaces. Experimental results using images collected by a camera mounted on a low-cost UAS demonstrate the feasibility of the proposed approach for photorealistic 3D surface reconstruction.

  19. Assessing tumor response after loco-regional liver cancer therapies: the role of 3D MRI

    PubMed Central

    Chapiro, Julius; Lin, MingDe; Duran, Rafael; Schernthaner, Rüdiger E; Geschwind, Jean-François

    2015-01-01

    Assessing the tumor response of liver cancer lesions after intraarterial therapies is of major clinical interest. Over the last two decades, tumor response criteria have come a long way from purely size-based, anatomic methods such as the Response Evaluation Criteria in Solid Tumors towards more functional, enhancement- and diffusion-based parameters with a strong emphasis on MRI as the ultimate imaging modality. However, the relatively low reproducibility of those one- and 2D techniques (modified Response Evaluation Criteria in Solid Tumors and the European Association for the Study of the Liver criteria) provided the rationale for the development of new, 3D quantitative assessment techniques. This review will summarize and compare the existing methodologies used for 3D quantitative tumor analysis and provide an overview of the published clinical evidence for the benefits of 3D quantitative tumor response assessment techniques. PMID:25371052

  20. A moving mesh algorithm for 3-D regional groundwater flow with water table and seepage face

    NASA Astrophysics Data System (ADS)

    Knupp, P.

    A numerical algorithm is described for solving the free-surface groundwater flow equations in 3-D large-scale unconfined aquifers with strongly heterogeneous conductivity and surface recharge. The algorithm uses a moving mesh to track the water-table as it evolves according to kinematic and seepage face boundary conditions. Both steady-state and transient algorithms are implemented in the SECO-Flow 3-D code and demonstrated on stratigraphy based on the Delaware Basin of south-eastern New Mexico.

  1. 3D geological modeling based on gravitational and magnetic data inversion in the Luanchuan ore region, Henan Province, China

    NASA Astrophysics Data System (ADS)

    Wang, Gongwen; Zhu, Yanyan; Zhang, Shouting; Yan, Changhai; Song, Yaowu; Ma, Zhenbo; Hong, Dongming; Chen, Tianzhen

    2012-05-01

    Three-dimensional (3D) geological modeling is an important method for understanding geological structures and exploring for mineral deposits. The Luanchuan super-large molybdenum polymetallic ore region has a complex geological setting and multiple metallogenic types. 3D geological modeling is implemented by combining geological knowledge with gravitational and magnetic data inversion in the study area. The 3D geological modeling methodology and the results are summarized as follows. (1) Based on the geological setting and the deposits/occurrences, the aim was to constrain and determine the main geological objects in 3D space to construct geological and metallogenic models. (2) Based on geological observations and rock physical measurements to derive qualitative information about geological objects at depths using gravitational and magnetic data inversion, 2.5D forward modeling was used to identify shallow/subsurface geological objects, and the 3D probability method of potential field inversion was used for coarse constraining of geological objects at depths. (3) A combination of geological information with gravitational and magnetic data inversion information was used to determine the space-time genesis of metallogenic objects in potential mineral targets (i.e., Late Jurassic granite intrusions, ore-forming strata, and ore mineralization favorable faults). (4)A 3D model of the study area (17.7 km × 12.0 km × 2.5 km) is associated with the surface and subsurface geological data, which has geophysical information that is beneficial for identifying and evaluating potential prospecting zones.

  2. Double regions growing algorithm for automated satellite image mosaicking

    NASA Astrophysics Data System (ADS)

    Tan, Yihua; Chen, Chen; Tian, Jinwen

    2011-12-01

    Feathering is a most widely used method in seamless satellite image mosaicking. A simple but effective algorithm - double regions growing (DRG) algorithm, which utilizes the shape content of images' valid regions, is proposed for generating robust feathering-line before feathering. It works without any human intervention, and experiment on real satellite images shows the advantages of the proposed method.

  3. A cut-&-paste strategy for the 3-D inversion of helicopter-borne electromagnetic data - II. Combining regional 1-D and local 3-D inversion

    NASA Astrophysics Data System (ADS)

    Ullmann, A.; Scheunert, M.; Afanasjew, M.; Börner, R.-U.; Siemon, B.; Spitzer, K.

    2016-07-01

    As a standard procedure, multi-frequency helicopter-borne electromagnetic (HEM) data are inverted to conductivity-depth models using 1-D inversion methods, which may, however, fail in areas of strong lateral conductivity contrasts (so-called induction anomalies). Such areas require more realistic multi-dimensional modelling. Since the full 3-D inversion of an entire HEM data set is still extremely time consuming, our idea is to combine fast 1-D and accurate but numerically expensive 3-D inversion of HEM data in such a way that the full 3-D inversion is only carried out for those parts of a HEM survey which are affected by induction anomalies. For all other parts, a 1-D inversion method is sufficient. We present a newly developed algorithm for identification, selection, and extraction of induction anomalies in HEM data sets and show how the 3-D inversion model of the anomalous area is re-integrated into the quasi-1-D background. Our proposed method is demonstrated to work properly on a synthetic and a field HEM data set from the Cuxhaven tunnel valley in Germany. We show that our 1-D/3-D approach yields better results compared to 1-D inversions in areas where 3-D effects occur.

  4. Anticipatory Spatial Representation of 3D Regions Explored by Sighted Observers and a Deaf-and-Blind-Observer

    ERIC Educational Resources Information Center

    Intraub, Helene

    2004-01-01

    Viewers who study photographs of scenes tend to remember having seen beyond the boundaries of the view ["boundary extension"; J. Exp. Psychol. Learn. Mem. Cogn. 15 (1989) 179]. Is this a fundamental aspect of scene representation? Forty undergraduates explored bounded regions of six common (3D) scenes, visually or haptically (while blindfolded)…

  5. Octree-based region growing for point cloud segmentation

    NASA Astrophysics Data System (ADS)

    Vo, Anh-Vu; Truong-Hong, Linh; Laefer, Debra F.; Bertolotto, Michela

    2015-06-01

    This paper introduces a novel, region-growing algorithm for the fast surface patch segmentation of three-dimensional point clouds of urban environments. The proposed algorithm is composed of two stages based on a coarse-to-fine concept. First, a region-growing step is performed on an octree-based voxelized representation of the input point cloud to extract major (coarse) segments. The output is then passed through a refinement process. As part of this, there are two competing factors related to voxel size selection. To balance the constraints, an adaptive octree is created in two stages. Empirical studies on real terrestrial and airborne laser scanning data for complex buildings and an urban setting show the proposed approach to be at least an order of magnitude faster when compared to a conventional region growing method and able to incorporate semantic-based feature criteria, while achieving precision, recall, and fitness scores of at least 75% and as much as 95%.

  6. Single-earthquake Location Using 3-D Vp and Vs Model - Applications in the Central USA and Taiwan Regions

    NASA Astrophysics Data System (ADS)

    Chiu, J.; Chen, H.; Kim, K.; Pujol, J.; Chiu, S.; Withers, M.

    2003-12-01

    Traditional local earthquake location using a horizontally layered homogeneous velocity model is always limited in its resolution and reliability due to the existence of frequently overlooked 3- dimensional complexity of the real earth. Simultaneous earthquake relocation during a traditional 3-D seismic tomography has only applied to a limited set of selected earthquakes that more than 50% of earthquakes in a catalog are basically ignored. A new earthquake location program has been developed to locate every local earthquake using the best available 3-D Vp and Vs model for a region. Many modern seismic networks have provided excellent spatial coverage of seismic stations to record high-resolution earthquake data to allow the determination of high-resolution 3-D Vp and Vs velocity model for the region. Once Vp and Vs information for all 3-D grid points are available, travel time from each grid point to all seismic stations can be calculated using any available 3-D ray tracing techniques and be stored in computer files for later usage. Travel times from a trial hypocenter to the recording stations can be interpolated simply from those of the adjacent 8 grid points available in computer files without the very time consuming 3-D ray tracing. Iterations continue until the hypocenter adjustments are less than the given criteria and the travel time residual, or the difference between the observed and the calculated travel times, is a minimum. Therefore, any earthquake, no matter how small or how big it is, will be efficiently and reliably located using the 3-D velocity model. This new location program has been applied to the New Madrid seismic zone of the central USA and in various seismic zones in Taiwan region. Preliminary results in these two regions indicate that earthquake hypocenters can be reliably relocated in spite of the very significant lateral structural variations. This location program can also be applied in routine earthquake location for any seismic network

  7. Image segmentation by iterative parallel region growing and splitting

    NASA Technical Reports Server (NTRS)

    Tilton, James C.

    1989-01-01

    The spatially constrained clustering (SCC) iterative parallel region-growing technique is applied to image analysis. The SCC algorithm is implemented on the massively parallel processor at NASA Goddard. Most previous region-growing approaches have the drawback that the segmentation produced depends on the order in which portions of the image are processed. The ideal solution to this problem (merging only the single most similar pair of spatially adjacent regions in the image in each iteration) becomes impractical except for very small images, even on a massively parallel computer. The SCC algorithm overcomes these problems by performing, in parallel, the best merge within each of a set of local, possibly overlapping, subimages. A region-splitting stage is also incorporated into the algorithm, but experiments show that region splitting generally does not improve segmentation results. The SCC algorithm has been tested on various imagery data, and test results for a Landsat TM image are summarized.

  8. SAR Imagery Segmentation by Statistical Region Growing and Hierarchical Merging

    SciTech Connect

    Ushizima, Daniela Mayumi; Carvalho, E.A.; Medeiros, F.N.S.; Martins, C.I.O.; Marques, R.C.P.; Oliveira, I.N.S.

    2010-05-22

    This paper presents an approach to accomplish synthetic aperture radar (SAR) image segmentation, which are corrupted by speckle noise. Some ordinary segmentation techniques may require speckle filtering previously. Our approach performs radar image segmentation using the original noisy pixels as input data, eliminating preprocessing steps, an advantage over most of the current methods. The algorithm comprises a statistical region growing procedure combined with hierarchical region merging to extract regions of interest from SAR images. The region growing step over-segments the input image to enable region aggregation by employing a combination of the Kolmogorov-Smirnov (KS) test with a hierarchical stepwise optimization (HSWO) algorithm for the process coordination. We have tested and assessed the proposed technique on artificially speckled image and real SAR data containing different types of targets.

  9. Applications of detailed 3D P-wave velocity crustal model in Poland for local, regional and global seismic tomography

    NASA Astrophysics Data System (ADS)

    Polkowski, Marcin; Grad, Marek

    2015-04-01

    The 3D P-wave seismic velocity model was obtained by combining data from multiple studies during past 50 years. Data sources included refraction seismology, reflection seismology, geological boreholes, vertical seismic profiling, magnetotellurics and gravimetry. Use of many data sources allowed creation of detailed 3D P-wave velocity model that reaches to depth of 60 km and includes 6-layers of sediments and 3-layers of the crust. Purpose of this study is to analyze how 3D model influences local (accuracy of location and source time estimation for local events), regional (identification of wide-angle seismic phases) and global (teleseismic tomography) seismic travel times. Additionally we compare results of forward seismic wave propagation with signals observed on short period and broadband stations. National Science Centre Poland provided financial support for this work by NCN grant DEC-2011/02/A/ST10/00284.

  10. 3D high-content screening for the identification of compounds that target cells in dormant tumor spheroid regions

    SciTech Connect

    Wenzel, Carsten; Riefke, Björn; Gründemann, Stephan; Krebs, Alice; Christian, Sven; Prinz, Florian; Osterland, Marc; Golfier, Sven; Räse, Sebastian; Ansari, Nariman; Esner, Milan; Bickle, Marc; Pampaloni, Francesco; Mattheyer, Christian; Stelzer, Ernst H.; Parczyk, Karsten; Prechtl, Stefan; Steigemann, Patrick

    2014-04-15

    Cancer cells in poorly vascularized tumor regions need to adapt to an unfavorable metabolic microenvironment. As distance from supplying blood vessels increases, oxygen and nutrient concentrations decrease and cancer cells react by stopping cell cycle progression and becoming dormant. As cytostatic drugs mainly target proliferating cells, cancer cell dormancy is considered as a major resistance mechanism to this class of anti-cancer drugs. Therefore, substances that target cancer cells in poorly vascularized tumor regions have the potential to enhance cytostatic-based chemotherapy of solid tumors. With three-dimensional growth conditions, multicellular tumor spheroids (MCTS) reproduce several parameters of the tumor microenvironment, including oxygen and nutrient gradients as well as the development of dormant tumor regions. We here report the setup of a 3D cell culture compatible high-content screening system and the identification of nine substances from two commercially available drug libraries that specifically target cells in inner MCTS core regions, while cells in outer MCTS regions or in 2D cell culture remain unaffected. We elucidated the mode of action of the identified compounds as inhibitors of the respiratory chain and show that induction of cell death in inner MCTS core regions critically depends on extracellular glucose concentrations. Finally, combinational treatment with cytostatics showed increased induction of cell death in MCTS. The data presented here shows for the first time a high-content based screening setup on 3D tumor spheroids for the identification of substances that specifically induce cell death in inner tumor spheroid core regions. This validates the approach to use 3D cell culture screening systems to identify substances that would not be detectable by 2D based screening in otherwise similar culture conditions. - Highlights: • Establishment of a novel method for 3D cell culture based high-content screening. • First reported high

  11. Line Intensities of CH3D in the Triad Region: 6-10 mu m

    SciTech Connect

    Brown, L. R.; Nikitin, A.; Benner, D. C.; Devi, V. M.; Smith, M.A.H.; Fejard, L.; Champion, J. P.; Tyuterev, Vl G.; Sams, Robert L.

    2004-06-30

    Line intensities of the three fundamentals of the 12CH3D Triad are modeled with an RMS of 3.2% using over 2100 observed values retrieved by multispectrum fitting of enriched sample spectra recorded with two Fourier transform spectrometers. The band strengths of the Triad in units of 10-18 cm-1/(molecule cm-2) at 296 K are, respectively, 2.33 for v6 (E) at 1161 cm-1, 1.75 for v3 (A1) at 1307 cm-1 and 0.571 for v5 (E) at 1472 cm-1. The total calculated absorption arising from 12CH3D Triad fundamentals is 4.65x10-18 cm-1/molecule cm-2) at 296K. In addition, some 740 intensities of nine hotbands are fitted to 8.1%; most of the hotband measurements belong to 2v6-v6 and v3+v6-v3 near 1160 cm-1, 2v3-v3 near 1304 cm-1. The other observed hotbands are v5 + v6-v6 2v5-v5, v5+v6-v5, v3+v5-v3, and v3+v5-v5.

  12. Robust and regional 3D facial asymmetry assessment in hemimandibular hyperplasia and hemimandibular elongation anomalies.

    PubMed

    Walters, M; Claes, P; Kakulas, E; Clement, J G

    2013-01-01

    Hemimandibular hyperplasia (HH) and hemimandibular elongation (HE) anomalies present with facial asymmetry and deranged occlusion. Currently, diagnosis and assessment of the facial dysmorphology is based on subjective clinical evaluation, supported by radiological scans. Advancements in objective assessments of facial asymmetry from three-dimensional (3D) facial scans facilitate a re-evaluation of the patterns of facial dysmorphology. Automated, robust and localised asymmetry assessments were obtained by comparing a 3D facial scan with its reflected image using a weighted least-squares superimposition. This robust superimposition is insensitive to severe asymmetries. This provides an estimation of the anatomical midline and a spatially dense vector map visualising localised directional differences between the left and right hemifaces. Analysis was conducted on three condylar hyperplasia phenotypes confirmed by clinical and CT evaluation: HH; HE; and hybrid phenotype. The midline extraction revealed chin point displacements in all cases. The upper lip philtrum and nose tip deviation to the affected side and a marked asymmetry of the mid face was noted in cases involving HE. Downward and medial rotation of the mandible with minor involvement of the midface was seen in the HH associated deformity. The hybrid phenotype case exhibited asymmetry features of both HH and HE cases. PMID:22749574

  13. Comparison of INSAT-3D AOD over Indian region with satellite- and ground-based measurements: a data assimilation perspective

    NASA Astrophysics Data System (ADS)

    Kumar, Sumit; George, John P.; Sreevathsa, M. N. Raghavendra; Indira Rani, S.

    2016-05-01

    This paper aims at comparing the INSAT-3D AOD with other space based observations over the continental regions. INSAT-3D launched in 2013 is an advanced geostationary weather satellite of India at 82° East longitude provides Aerosol Optical Depth (AOD) observations at 650 nm over both land and ocean. The level-3 daily AOD measurements from MODIS (both Aqua and Terra) and MISR are used for comparison with that from INSAT-3D. This work is applied during premonsoon season of 2015. Overall statistical scores and systematic errors are compared to characterize various error sources. Our study indicates that significant differences exist between different aerosol observations which may be partly due to retrieval algorithm, sensor configurations and temporal sampling. Comparison of INSAT observed AOD shows less bias towards MISR and MODIS-Terra observed AOD than with MODIS-Aqua. The INSAT observations over oceanic region have better correlation, minimum bias and rmse than land region. Overall, the mean bias of the dataset is ±0.05, with a root mean square error of 0.22, but these errors are also found highly dependent on geographical region. Additionally, we compared INSAT 660 nm AOD with two AERONET ground stations. The comparison of INSAT with different observations shows that the retrieved AOD is closer to the ground-based data than the MISR and MODIS AOD.

  14. Monitoring Southern African Rainfall Season Utilizing Growing Regions

    NASA Astrophysics Data System (ADS)

    Husak, G. J.; Magadzire, T.

    2005-12-01

    Variability in timing and amount of rainfall during the growing season in southern Africa can have a dramatic impact on livelihoods in the region. This research integrates satellite model rainfall amounts with expectations for the remainder of the season to provide an envelope of likely outcomes for different growing regions. Satellite information combined with station observations combine to make the African Rainfall Climatology (ARC), which is used to estimate the start of season (SOS) and monitor the season-to-date rainfall accumulations at a pixel level. The Collaborative Historical African Rainfall Model (CHARM) - a 36-year climatology based on available station fields, global climate models and an orographic component - is used to estimate various scenarios for the remainder of the season. The season length is defined by location specific length of growing period provided by the Southern African Development Community (SADC). Once the SOS is observed according to the ARC, seasonal accumulations for each pixel begin and are evaluated at a dekadal interval. These accumulations can be compared to historical accumulations after an equal number of dekads to evaluate the progression of the season as a percentage of historical season-to-date totals for each pixel. Rainfall accumulations for the remainder of the growing period can be tallied for each year of the CHARM dataset, and Gamma probability distribution parameters can be fit to these values. Using these distribution parameters, it is possible to evaluate scenarios for the remainder of the season and combine them with the accumulations from the ARC to arrive at total rainfall accumulated during a growing period. Analysis of these totals can be compared with long-term mean accumulations for the growing period to estimate how crops will fare relative to past performance. Evaluation of various wet and dry scenarios for the remainder of the season, defined here as the 80th percentile and 20th percentile, provide an

  15. Color image segmentation using vector angle-based region growing

    NASA Astrophysics Data System (ADS)

    Wesolkowski, Slawo; Fieguth, Paul W.

    2002-06-01

    A new region growing color image segmentation algorithm is presented in this paper. This algorithm is invariant to highlights and shading. This is accomplished in two steps. First, the average pixel intensity is removed from each RGB coordinate. This transformation mitigates the effects of highlights. Next, region seeds are obtained using the Mixture of Principal Components algorithm. Each region is characterized using two parameters. The first is the distance between the region prototype and the candidate pixel. The second is the distance between the candidate pixel and its nearest neighbor in the region. The inner vector product or vector angle is used as the similarity measure which makes both of these measures shading invariant. Results on a real image illustrate the effectiveness of the method.

  16. Understanding surface processes 3D imaging from micro-scale to regional scale

    NASA Astrophysics Data System (ADS)

    Jaboyedoff, Michel; Abellan, Antonio; Carrea, Dario; Derron, Marc-Henri; Franz, Martin; Guerin, Antoine; Humair, Florian; Matasci, Battista; Michoud, Clément; Nicolet, Pierrick; Penna, Ivanna; Rudaz, Benjamin; Voumard, Jeremie; Wyser, Emmanuel

    2015-04-01

    The production of topography using remote sensing techniques has considerably been improved during the last fifteen years due to the advances in electronics and to the increase of computing power. The earth surface is monitored at all the scales using Space Shuttle Missions (SRTM) digital elevation model (DEM), or using laser scanner (LS), both terrestrial (TLS) and airborne (ALS), with accuracies that can reach up to less than 50 microns for observations of objects at meter scale. Recently, photogrammetry has been pushed by the progress of LiDAR and thanks to the advance in image recognition. It led to the development of new techniques such as structure-from-motion (SFM), which allows obtaining 3D point cloud based on several pictures of the same object taken from several point of views. Both LiDAR and Photogrammetry produce 3D point clouds. One of the current 3D applications is the surface changes, which is often based simply on the subtraction of DEM at different time intervals, leading to a simple superficial description of the natural processes without information on the mass transport. However, a point cloud has much more information than a simple surface. For instance, shape recognition can be used to track objects or deformations such as a rock mass toppling, either using the shape of the point cloud or a specific moving element. Such method permits, for instance, to study in detail pre-failure accelerations, and are now routinely used in mining industry. Other methods are coupling images and DEMs and are used, for example, to capture the surface vectors of displacements in order to deduce the surface deformations of landslides. These types of surveys have now broad applications to all kinds of erosional processes. The coastal retreat can be monitored, and it displays in some places several centimetres per year of retreat on average. The sediment transports in torrent are now better constraint showing clearly pulses. The seasonal cycles can as well be

  17. Towards Automatic Image Segmentation Using Optimised Region Growing Technique

    NASA Astrophysics Data System (ADS)

    Alazab, Mamoun; Islam, Mofakharul; Venkatraman, Sitalakshmi

    Image analysis is being adopted extensively in many applications such as digital forensics, medical treatment, industrial inspection, etc. primarily for diagnostic purposes. Hence, there is a growing interest among researches in developing new segmentation techniques to aid the diagnosis process. Manual segmentation of images is labour intensive, extremely time consuming and prone to human errors and hence an automated real-time technique is warranted in such applications. There is no universally applicable automated segmentation technique that will work for all images as the image segmentation is quite complex and unique depending upon the domain application. Hence, to fill the gap, this paper presents an efficient segmentation algorithm that can segment a digital image of interest into a more meaningful arrangement of regions and objects. Our algorithm combines region growing approach with optimised elimination of false boundaries to arrive at more meaningful segments automatically. We demonstrate this using X-ray teeth images that were taken for real-life dental diagnosis.

  18. Regional application of multi-layer artificial neural networks in 3-D ionosphere tomography

    NASA Astrophysics Data System (ADS)

    Ghaffari Razin, Mir Reza; Voosoghi, Behzad

    2016-08-01

    Tomography is a very cost-effective method to study physical properties of the ionosphere. In this paper, residual minimization training neural network (RMTNN) is used in voxel-based tomography to reconstruct of 3-D ionosphere electron density with high spatial resolution. For numerical experiments, observations collected at 37 GPS stations from Iranian permanent GPS network (IPGN) are used. A smoothed TEC approach was used for absolute STEC recovery. To improve the vertical resolution, empirical orthogonal functions (EOFs) obtained from international reference ionosphere 2012 (IRI-2012) used as object function in training neural network. Ionosonde observations is used for validate reliability of the proposed method. Minimum relative error for RMTNN is 1.64% and maximum relative error is 15.61%. Also root mean square error (RMSE) of 0.17 × 1011 (electrons/m3) is computed for RMTNN which is less than RMSE of IRI2012. The results show that RMTNN has higher accuracy and compiles speed than other ionosphere reconstruction methods.

  19. Regional airflow and particle distribution in the lung with a 3D-1D coupled subject-specific boundary condition

    NASA Astrophysics Data System (ADS)

    Choi, Jiwoong; Yin, Youbing; Hoffman, Eric; Tawhai, Merryn; Lin, Ching-Long

    2010-11-01

    Correct prediction of regional distribution of inhaled aerosol particles is vital to improve pulmonary medicine. Physiologically consistent regional ventilations of airflow and aerosol particles are simulated with a 3D-1D coupled subject-specific boundary condition (BC). In 3D CT-resolved 7-generation airways, large eddy simulations are performed to capture detailed airflow characteristics and Lagrangian particle simulations are carried to track the particle transport and deposition. Results are compared with two traditional outlet BCs: uniform velocity and uniform pressure. Proposed BC is eligible for physiologically consistent airflow distribution in the lung, while the others are not. The regional ventilation and deposition of particles reflect the regional ventilation of airflow. In this study, two traditional BCs yield up to 98% (334%) over-prediction in lobar particle ventilation (deposition) fraction. Upper to lower particle ventilation ratios of both left and right lungs read ˜0.4 with the proposed BC, while those for the other two BCs vary with the error up to 73%.

  20. HS3D, A Dataset of Homo Sapiens Splice Regions, and its Extraction Procedure from a Major Public Database

    NASA Astrophysics Data System (ADS)

    Pollastro, Pasquale; Rampone, Salvatore

    The aim of this work is to describe a cleaning procedure of GenBank data, producing material to train and to assess the prediction accuracy of computational approaches for gene characterization. A procedure (GenBank2HS3D) has been defined, producing a dataset (HS3D - Homo Sapiens Splice Sites Dataset) of Homo Sapiens Splice regions extracted from GenBank (Rel.123 at this time). It selects, from the complete GenBank Primate Division, entries of Human Nuclear DNA according with several assessed criteria; then it extracts exons and introns from these entries (actually 4523 + 3802). Donor and acceptor sites are then extracted as windows of 140 nucleotides around each splice site (3799 + 3799). After discarding windows not including canonical GT-AG junctions (65 + 74), including insufficient data (not enough material for a 140 nucleotide window) (686 + 589), including not AGCT bases (29 + 30), and redundant (218 + 226), the remaining windows (2796 + 2880) are reported in the dataset. Finally, windows of false splice sites are selected by searching canonical GT-AG pairs in not splicing positions (271 937 + 332 296). The false sites in a range +/- 60 from a true splice site are marked as proximal. HS3D, release 1.2 at this time, is available at the Web server of the University of Sannio: http://www.sci.unisannio.it/docenti/rampone/.

  1. An iterative approach to region growing using associative memories

    NASA Technical Reports Server (NTRS)

    Snyder, W. E.; Cowart, A.

    1983-01-01

    Region growing, often given as a classical example of the recursive control structures used in image processing which are often awkward to implement in hardware where the intent is the segmentation of an image at raster scan rates, is addressed in light of the postulate that any computation which can be performed recursively can be performed easily and efficiently by iteration coupled with association. Attention is given to an algorithm and hardware structure able to perform region labeling iteratively at scan rates. Every pixel is individually labeled with an identifier which signifies the region to which it belongs. Difficulties otherwise requiring recursion are handled by maintaining an equivalence table in hardware transparent to the computer, which reads the labeled pixels. A simulation of the associative memory has demonstrated its effectiveness.

  2. A coronary artery segmentation method based on multiscale analysis and region growing.

    PubMed

    Kerkeni, Asma; Benabdallah, Asma; Manzanera, Antoine; Bedoui, Mohamed Hedi

    2016-03-01

    Accurate coronary artery segmentation is a fundamental step in various medical imaging applications such as stenosis detection, 3D reconstruction and cardiac dynamics assessing. In this paper, a multiscale region growing (MSRG) method for coronary artery segmentation in 2D X-ray angiograms is proposed. First, a region growing rule incorporating both vesselness and direction information in a unique way is introduced. Then an iterative multiscale search based on this criterion is performed. Selected points in each step are considered as seeds for the following step. By combining vesselness and direction information in the growing rule, this method is able to avoid blockage caused by low vesselness values in vascular regions, which in turn, yields continuous vessel tree. Performing the process in a multiscale fashion helps to extract thin and peripheral vessels often missed by other segmentation methods. Quantitative evaluation performed on real angiography images shows that the proposed segmentation method identifies about 80% of the total coronary artery tree in relatively easy images and 70% in challenging cases with a mean precision of 82% and outperforms others segmentation methods in terms of sensitivity. The MSRG segmentation method was also implemented with different enhancement filters and it has been shown that the Frangi filter gives better results. The proposed segmentation method has proven to be tailored for coronary artery segmentation. It keeps an acceptable performance when dealing with challenging situations such as noise, stenosis and poor contrast. PMID:26748040

  3. Automated scoring of regional lung perfusion in children from contrast enhanced 3D MRI

    NASA Astrophysics Data System (ADS)

    Heimann, Tobias; Eichinger, Monika; Bauman, Grzegorz; Bischoff, Arved; Puderbach, Michael; Meinzer, Hans-Peter

    2012-03-01

    MRI perfusion images give information about regional lung function and can be used to detect pulmonary pathologies in cystic fibrosis (CF) children. However, manual assessment of the percentage of pathologic tissue in defined lung subvolumes features large inter- and intra-observer variation, making it difficult to determine disease progression consistently. We present an automated method to calculate a regional score for this purpose. First, lungs are located based on thresholding and morphological operations. Second, statistical shape models of left and right children's lungs are initialized at the determined locations and used to precisely segment morphological images. Segmentation results are transferred to perfusion maps and employed as masks to calculate perfusion statistics. An automated threshold to determine pathologic tissue is calculated and used to determine accurate regional scores. We evaluated the method on 10 MRI images and achieved an average surface distance of less than 1.5 mm compared to manual reference segmentations. Pathologic tissue was detected correctly in 9 cases. The approach seems suitable for detecting early signs of CF and monitoring response to therapy.

  4. Individual 3D region-of-interest atlas of the human brain: automatic training point extraction for neural-network-based classification of brain tissue types

    NASA Astrophysics Data System (ADS)

    Wagenknecht, Gudrun; Kaiser, Hans-Juergen; Obladen, Thorsten; Sabri, Osama; Buell, Udalrich

    2000-04-01

    Individual region-of-interest atlas extraction consists of two main parts: T1-weighted MRI grayscale images are classified into brain tissues types (gray matter (GM), white matter (WM), cerebrospinal fluid (CSF), scalp/bone (SB), background (BG)), followed by class image analysis to define automatically meaningful ROIs (e.g., cerebellum, cerebral lobes, etc.). The purpose of this algorithm is the automatic detection of training points for neural network-based classification of brain tissue types. One transaxial slice of the patient data set is analyzed. Background separation is done by simple region growing. A random generator extracts spatially uniformly distributed training points of class BG from that region. For WM training point extraction (TPE), the homogeneity operator is the most important. The most homogeneous voxels define the region for WM TPE. They are extracted by analyzing the cumulative histogram of the homogeneity operator response. Assuming a Gaussian gray value distribution in WM, a random number is used as a probabilistic threshold for TPE. Similarly, non-white matter and non-background regions are analyzed for GM and CSF training points. For SB TPE, the distance from the BG region is an additional feature. Simulated and real 3D MRI images are analyzed and error rates for TPE and classification calculated.

  5. Toward 3-D Echocardiographic Determination of Regional Myofiber Structure.

    PubMed

    Milne, Michelle L; Singh, Gautam K; Miller, James G; Wallace, Kirk D; Holland, Mark R

    2016-02-01

    As a step toward the goal of relating changes in underlying myocardial structure to observed altered cardiac function in the hearts of individual patients, this study addresses the feasibility of creating echocardiography-derived maps of regional myocardial fiber structure for entire, intact, excised sheep hearts. Backscatter data were obtained from apical echocardiographic images acquired with a clinical ultrasonic imaging system and used to determine local fiber orientations in each of seven hearts. Systematic acquisition across the entire heart volume provided information sufficient to give a complete map for each heart. Results from the echocardiography-derived fiber maps compare favorably with corresponding results derived from diffusion tensor magnetic resonance imaging. The results of this study provide evidence of the feasibility of using echocardiographic methods to generate individualized whole heart fiber maps for patients. PMID:26589530

  6. A region-appearance-based adaptive variational model for 3D liver segmentation

    SciTech Connect

    Peng, Jialin; Dong, Fangfang; Chen, Yunmei; Kong, Dexing

    2014-04-15

    Purpose: Liver segmentation from computed tomography images is a challenging task owing to pixel intensity overlapping, ambiguous edges, and complex backgrounds. The authors address this problem with a novel active surface scheme, which minimizes an energy functional combining both edge- and region-based information. Methods: In this semiautomatic method, the evolving surface is principally attracted to strong edges but is facilitated by the region-based information where edge information is missing. As avoiding oversegmentation is the primary challenge, the authors take into account multiple features and appearance context information. Discriminative cues, such as multilayer consecutiveness and local organ deformation are also implicitly incorporated. Case-specific intensity and appearance constraints are included to cope with the typically large appearance variations over multiple images. Spatially adaptive balancing weights are employed to handle the nonuniformity of image features. Results: Comparisons and validations on difficult cases showed that the authors’ model can effectively discriminate the liver from adhering background tissues. Boundaries weak in gradient or with no local evidence (e.g., small edge gaps or parts with similar intensity to the background) were delineated without additional user constraint. With an average surface distance of 0.9 mm and an average volume overlap of 93.9% on the MICCAI data set, the authors’ model outperformed most state-of-the-art methods. Validations on eight volumes with different initial conditions had segmentation score variances mostly less than unity. Conclusions: The proposed model can efficiently delineate ambiguous liver edges from complex tissue backgrounds with reproducibility. Quantitative validations and comparative results demonstrate the accuracy and efficacy of the model.

  7. Satellite radiance assimilation using 3D-Var: A case study of thunderstorm over Indian Region

    NASA Astrophysics Data System (ADS)

    Kumar, Dinesh; Kumar, Krishan; Mohanty, U. C.

    Severe thunderstorms are the most frequent weather phenomenon during the pre-monsoon months of April and May over east and northeast India. Dry convective systems such as sand storms, dust storms/ thunderstorms are prominent over northwestern India during pre-monsoon season. Prediction of local severe storms is a challenging task due to non-linear nature of the convective system. Part of the problem is due to small time scales of these disturbances which enable only short lead times for forecasting. The initiation, intensification and propagation of thunderstorms are mostly governed by the synoptic situation and localized thermodynamic conditions of the atmosphere. The topography of the region also plays a significant role in initiation of convective activities over the region during the period. Prediction of these severe thunderstorms in advance is vital as it would minimize the damages associated with them. Over the last decade, high resolution mesoscale models with three dimensional variational technique (3DVAR) are being increasingly applied for studying severe weather phenomena as these models possess the capability of generating reasonably good forecast of severe weather phenomena. However the numerical simulations are hampered by inappropriate representation of initial and boundary conditions used from a global model output of courser resolution, this issue is addressed by assimilating observations from various platforms into the model initial condition which would give way for better prediction of these events. The satellite radiance is an important data source for mesoscale/microscale weather analysis and forecasting. Currently, the variational techniques have received considerable attention for assimilation of satellite radiance. Satellite radiance assimilation has more impact on the moisture and temperature. It is observed that the model initial condition improved significantly after assimilation of satellite radiance observation as compared to the

  8. Regional Gastrointestinal Transit Times in Patients With Carcinoid Diarrhea: Assessment With the Novel 3D-Transit System

    PubMed Central

    Gregersen, Tine; Haase, Anne-Mette; Schlageter, Vincent; Gronbaek, Henning; Krogh, Klaus

    2015-01-01

    Background/Aims The paucity of knowledge regarding gastrointestinal motility in patients with neuroendocrine tumors and carcinoid diarrhea restricts targeted treatment. 3D-Transit is a novel, minimally invasive, ambulatory method for description of gastrointestinal motility. The system has not yet been evaluated in any group of patients. We aimed to test the performance of 3D-Transit in patients with carcinoid diarrhea and to compare the patients’ regional gastrointestinal transit times (GITT) and colonic motility patterns with those of healthy subjects. Methods Fifteen healthy volunteers and seven patients with neuroendocrine tumor and at least 3 bowel movements per day were investigated with 3D-Transit and standard radiopaque markers. Results Total GITT assessed with 3D-Transit and radiopaque markers were well correlated (Spearman’s rho = 0.64, P = 0.002). Median total GITT was 12.5 (range: 8.5–47.2) hours in patients versus 25.1 (range: 13.1–142.3) hours in healthy (P = 0.007). There was no difference in gastric emptying (P = 0.778). Median small intestinal transit time was 3.8 (range: 1.4–5.5) hours in patients versus 4.4 (range: 1.8–7.2) hours in healthy subjects (P = 0.044). Median colorectal transit time was 5.2 (range: 2.9–40.1) hours in patients versus 18.1 (range: 5.0–134.0) hours in healthy subjects (P = 0.012). Median frequency of pansegmental colonic movements was 0.45 (range: 0.03–1.02) per hour in patients and 0.07 (range: 0–0.61) per hour in healthy subjects (P = 0.045). Conclusions Three-dimensional Transit allows assessment of regional GITT in patients with diarrhea. Patients with carcinoid diarrhea have faster than normal gastrointestinal transit due to faster small intestinal and colorectal transit times. The latter is caused by an increased frequency of pansegmental colonic movements. PMID:26130638

  9. THEMIS and MOLA Provide 3-D Stratigraphy in the Terra Meridiani Region of Mars

    NASA Astrophysics Data System (ADS)

    Phillips, R. J.; Hynek, B. M.

    2005-12-01

    The layered rocks observed in the vicinity of the Mars Exploration Rover (MER) Opportunity landing site are part of a vast stratigraphic complex exposed over ~3×105km2, encompassing 20° of longitude [Hynek, 2004, Nature]. We have used elevations derived from geoid- and orbit-corrected individual MOLA laser shots to determine the three-dimensional disposition of individual stratigraphic horizons exposed within the complex and as mapped with 100 m/pix THEMIS thermal inertia images (high inertia areas correspond to ``etched terrain''). The Opportunity landing site is near the NW edge of an elongated NE-trending topographic bench that contains the hematite-rich plains unit and is about 500 km wide. Mappable stratigraphic exposures occur mostly in two groups, one near the base of the upward slope (to the Arabia Highlands) on the SE side of the bench and one near the top of the downward slope (to the Northern Lowlands) on the NW side of the bench. The total thickness of the stratigraphic complex is ~1000 m. We fit least-squares planes to individual horizons and tested for quality of fit. Our main interest is the orientations of the planes, so the probability density function of the tangent of the dip azimuth was used as a discriminator for solution acceptance (dip azimuth error range < 30°). Of the 22 horizons sampled, 14 had acceptable solutions. The 14 individual stratigraphic horizons are spatially extensive, with maximum MOLA sampling separations in a given horizon being as much as 200 km (mean for all horizons is 80 km). This implies that the depositional environment for these units was coherent over a scale of typically 100 km. Of the 14 acceptable horizons, 10 have shallow dip azimuths in the direction N to NW, consistent with the long-wavelength (regional) slope, which itself is the result of the global pole-to-pole slope plus Noachian-aged Tharsis-induced membrane deformation [Phillips et al., 2001, Science]. The stratigraphic complex both overlies and is

  10. 3-D velocity heterogeneity in earthquake swarm area of NW Bohemia/Vogtland (German-Czech border region)

    NASA Astrophysics Data System (ADS)

    Mousavi, Sima; Bauer, Klaus; Korn, Michael

    2014-05-01

    3-D Vp and Vp/Vs structure of the geodynamically active NW Bohemia/Vogtland area, located at the border region between Germany and Czech republic, has been determined from local earthquake tomography using 543 earthquakes which have been recorded during 2000 to 2010. This region is known for the occurrence of earthquake swarms that are supposed to be triggered by fluid upwelling in the crust, although fluid behaviour and migration paths in the subsurface of NW Bohemia is still poorly known. The events used in this study were selected based on a minimum 12 P and S phase observations and an azimuthal gap less than 160º. This data set is employed to derive a minimum 1-D velocity model and to relocate the hypocenters. The minimum 1-D velocity model is then used as an initial model in non-linear inversion to derive 3-D P-velocity and Vp/Vs ratio. Using synthetic tests, it can be shown that a high resolution is obtained in the central part of the studied region with the given source and receiver configuration. Two branches of high Vp/Vs ratio anomalies have been detected above the swarm quakes' focal zone. These anomalies support the existence of two main fluid passages toward Bad Brambach and Bublak moffette. Another interesting result is a high Vp/Vs line-like anomaly along Mariánské Lázně fault where most of the swarm quakes occur, which could be due to a fluid saturated area around the cracked zone of the fault plain. Hypocenters in the swarm region are located in a low Vp and Vp/Vs anomaly. The correlation between the detected Vp and Vp/Vs anomalies and the location of earthquake swarm suggests a model in which CO2 as part of magmatic fluids exist in a vast area beneath NW Bohemia and frequently migrate up to the surface.

  11. An LS-MARS method for modeling regional 3D ionospheric electron density based on GPS data and IRI

    NASA Astrophysics Data System (ADS)

    Kao, Szu-Pyng; Chen, Yao-Chung; Ning, Fang-Shii; Tu, Yuh-Min

    2015-05-01

    The methods of developing an accurate and effective ionospheric electron density (IED) model have greatly interested ionosphere researchers. Numerous scholars have proposed many effective and reliable models and methods of global positioning system (GPS)-based computerized ionospheric tomography (CIT) in the past decades. This study introduced a new function-based CIT method, namely the LS-MARS (Least Squares method-Multivariate Adaptive Regression Splines), combining MARS with IEDs calculated by International Reference Ionosphere (IRI) to automatically choose the best representing basis functions for the three-dimensional (3D) electron density inside that modeling area. This selected basis functions was substituted into the observation equation of the GPS total electron content (TEC) to calculate the design matrix. Finally, the weighted damped least squares (WDLS) were adopted to reestimate the IED model coefficients. In contrast to common function-based CIT methods, the LS-MARS can be used to attain optimal 3D model automatically, flexibly, adaptively based on the IRI without a priori knowledge of the IED distribution mathematical function. The findings indicated that the LS-MARS model had a smaller recovery TEC error than did the MARS_IRI2012 model, and the VTEC calculated using the LS-MARS model was closer to the VTEC obtained from International GNSS Service (IGS) final IONEX files than was the VTEC calculated using the MARS_IRI2012 and IRI2012. Therefore, this method exhibits strong modeling effectiveness and reliability, and can be an efficient alternative method for estimating regional 3D IED models.

  12. 3D Image Tour of the Hayward Fault in the East Bay, San Francisco Bay Region, California

    NASA Astrophysics Data System (ADS)

    Stoffer, P.

    2007-12-01

    A 3D image tour of the Hayward Fault begins at its northern land-based terminus at Point Pinole from where it continues northward under the waters of San Pablo Bay. From Point Pinole, the Hayward Fault extends southward for about 90 kilometers through the urbanized landscape of the East Bay region, passing through the cities of Richmond, Berkeley, Oakland, San Leandro, Hayward, Fremont, and other communities. At its southern end, the fault forms a series of oblique reverse faults, but at depth it connects with the Calaveras Fault as a through-going structure along the western foothills of the Diablo Range east of the greater San Jose area. This presentation focuses on access to the Hayward Fault in public places where features impacted by active fault creep can be viewed. Features include offset curbs, fractures in sidewalks, parking areas, buildings, and damage to other infrastructure in the active fault zone. Additional images highlight landscape features and historic landmarks along the fault, including those that were impacted by the 1868 Hayward earthquake, and those that were or were engineered both with and without consideration of the location of the fault. Earthquake data and geologic interpretations of the subsurface along the fault zone are also presented. This presentation, and an associated website, is for educational audiences with the intent of promoting public awareness and earthquake preparedness. This work is part of the ongoing outreach and public education efforts by the U.S. Geological Survey in cooperation with the 1868 Hayward Earthquake Alliance in anticipation of the 140th anniversary of the great earthquake. The use of 3D imagery enhances the educational value of the presentation and provides a unique perspective on the subject matter. Red-and-cyan 3D viewing glasses will be available at the presentation.

  13. MODELING STATISTICAL PROPERTIES OF SOLAR ACTIVE REGIONS THROUGH DIRECT NUMERICAL SIMULATIONS OF 3D-MHD TURBULENCE

    SciTech Connect

    Malapaka, Shiva Kumar; Mueller, Wolf-Christian

    2013-09-01

    Statistical properties of the Sun's photospheric turbulent magnetic field, especially those of the active regions (ARs), have been studied using the line-of-sight data from magnetograms taken by the Solar and Heliospheric Observatory and several other instruments. This includes structure functions and their exponents, flatness curves, and correlation functions. In these works, the dependence of structure function exponents ({zeta}{sub p}) of the order of the structure functions (p) was modeled using a non-intermittent K41 model. It is now well known that the ARs are highly turbulent and are associated with strong intermittent events. In this paper, we compare some of the observations from Abramenko et al. with the log-Poisson model used for modeling intermittent MHD turbulent flows. Next, we analyze the structure function data obtained from the direct numerical simulations (DNS) of homogeneous, incompressible 3D-MHD turbulence in three cases: sustained by forcing, freely decaying, and a flow initially driven and later allowed to decay (case 3). The respective DNS replicate the properties seen in the plots of {zeta}{sub p} against p of ARs. We also reproduce the trends and changes observed in intermittency in flatness and correlation functions of ARs. It is suggested from this analysis that an AR in the onset phase of a flare can be treated as a forced 3D-MHD turbulent system in its simplest form and that the flaring stage is representative of decaying 3D-MHD turbulence. It is also inferred that significant changes in intermittency from the initial onset phase of a flare to its final peak flaring phase are related to the time taken by the system to reach the initial onset phase.

  14. The High Resolution Infrared Spectrum of CH 3D in the Region 900-1700 cm -1

    NASA Astrophysics Data System (ADS)

    Nikitin, A.; Champion, J. P.; Tyuterev, Vl. G.; Brown, L. R.

    1997-07-01

    The high resolution absorption spectrum of CH3D in the region 900-1700 cm-1has been reexamined on the basis of new long path experimental data recorded with the Fourier transform spectrometer at Kitt Peak. A theoretical model used previously for spherical rotors has been adapted for symmetric top molecules in order to analyze the vibrational polyads of CH3D simultaneously. Both triad and nonad-triad band systems have been investigated. The hot band intensities were estimated through direct extrapolation of the triad dipole moments. Six hundred lines from the hot bands have been assigned and combined with other data for the triad. The main hot bands contributions are due to 2ν6- ν6, 2ν3- ν3, ν3+ ν6- ν3and ν3+ ν6- ν6bands. The standard deviation achieved for 3377 line positions of the triad was 0.56 10-3cm-1, representing an improvement of one order of magnitude with respect to the most recent analysis.

  15. Genetic approach to reconstruct complex regional geological setting of the Baltic basin in 3D geological model

    NASA Astrophysics Data System (ADS)

    Popovs, K.; Saks, T.; Ukass, J.; Jatnieks, J.

    2012-04-01

    Interpretation of geological structures in 3D geological models is a relatively new research topic that is already standardized in many geological branches. Due to its wide practical application, these models are indispensable and become one of the dominant interpretation methods in reducing geological uncertainties in many geology fields. Traditionally, geological concepts complement quantitative as much as qualitative data to obtain a model deemed acceptable, however, available data very often is insufficient and modeling methods primarily focus on spatial data but geological history usually is mostly neglected for the modeling of large sedimentary basins. A need to better integrate the long and often complex geological history and geological knowledge into modeling procedure is very acute to gain geological insight and improve the quality of geological models. During this research, 3D geological model of the Baltic basin (BB) was created. Because of its complex regional geological setting - wide range of the data sources with multiple scales, resolution and density as well as its various source formats, the study area provides a challenge for the 3D geological modeling. In order to create 3D regional geometrical model for the study area algorithmic genetic approach for model geometry reconstruction was applied. The genetic approach is based on the assumption that post-depositional deformation produce no significant change in sedimentary strata volume, assuming that the strata thickness and its length in a cross sectional plane remains unchanged except as a result of erosion. Assuming that the tectonic deformation occurred in sequential cycles and subsequent tectonic stage strata is separated by regional unconformity as is the case of the BB, there is an opportunity for algorithmic approach in reconstructing these conditions by sequentially reconstructing the layer original thickness. Layer thicknesses were sliced along fault lines, where applicable layer

  16. Yeast diversity on grapes in two German wine growing regions.

    PubMed

    Brysch-Herzberg, Michael; Seidel, Martin

    2015-12-01

    The yeast diversity on wine grapes in Germany, one of the most northern wine growing regions of the world, was investigated by means of a culture dependent approach. All yeast isolates were identified by sequence analysis of the D1/D2 domain of the 26S rDNA and the ITS region. Besides Hanseniaspora uvarum and Metschnikowia pulcherrima, which are well known to be abundant on grapes, Metschnikowia viticola, Rhodosporidium babjevae, and Curvibasidium pallidicorallinum, as well as two potentially new species related to Sporidiobolus pararoseus and Filobasidium floriforme, turned out to be typical members of the grape yeast community. We found M. viticola in about half of the grape samples in high abundance. Our data strongly suggest that M. viticola is one of the most important fermenting yeast species on grapes in the temperate climate of Germany. The frequent occurrence of Cu. pallidicorallinum and strains related to F. floriforme is a new finding. The current investigation provides information on the distribution of recently described yeast species, some of which are known from a very few strains up to now. Interestingly yeasts known for their role in the wine making process, such as Saccharomyces cerevisiae, Saccharomyces bayanus ssp. uvarum, Torulaspora delbrueckii, and Zygosaccharomyces bailii, were not found in the grape samples. PMID:26292165

  17. 3-D velocity structure around tehri region of the garhwal lesser himalaya: constraints on geometry of the underthrusting indian plate

    NASA Astrophysics Data System (ADS)

    Kanaujia, Jyotima; Kumar, Ashwani; Gupta, S. C.

    2016-02-01

    We investigate the upper crustal velocity structure beneath the Tehri region of the Garhwal Himalaya. The investigated region is situated within the 700-km-long central seismic gap of the Himalaya that has experienced three gap-filling earthquakes since 1991 including the recent 2015 Nepal earthquake (Mw 7.8). The local tomographic inversion is based on a dataset of 1365 events collected from January 2008 to December 2012 by a 12-station local network that covers an area of about 100 × 80 km around Tehri Dam. We perform a simultaneous inversion for P- and S-wave velocity anomalies. Tomograms are interpreted in the backdrop of the regional geological and tectonic framework of the region. The spatial distribution of relocated events from the 3- D velocity model has shed new light on the pattern of seismicity in the vicinity of the Main Central thrust (MCT), and has elucidated the structure of the underthrusting Indian plate. Our model exhibits a significant negative velocity anomaly up to ˜5 per cent beneath the central part of the Garhwal Inner Lesser Himalaya, and a P-wave low velocity anomaly near the Chamoli region. The seismicity zone around the Chamoli region may be attributed to the presence of fluid filled rocks. Furthermore, an area with˜3-4 per cent positive velocity anomaly is delineated to the northwest of the Uttarkashi thrust in the vicinity of the MCT. Significant findings of the study include: a flat-ramp-flat type sub-surface geometry of the underthrusting Indian plate below the Garhwal Himalaya, high velocity images representing the trend and configuration of Delhi-Haridwar-ridge below the Sub Himalaya and Lesser Himalaya, and a seismically active zone representing geometrical asperity on the basement thrust in the vicinity of the MCT.

  18. Active Regions on the Farside of the Sun as Seen from Mars: 3D Visualization with Marie Data

    NASA Technical Reports Server (NTRS)

    Saganti, P. B.; Cueinotra, F. A.; Cleghorn, T. F.; Zeitlin, C. J.

    2004-01-01

    From March 2002, the MARIE (Martian Radiation Environment Experiment) instrument of NASA-JSC onboard the 2001 Mars Odyssey spacecraft has been providing radiation data from the Martian orbit. During the past two years, the orbit alignment of Mars-Sun-Earth provided a wealth of opportunity between 180 degrees (August 2002) and 0 degrees (October 2003). During this time, the MARIE data included the background GCR (Galactic Cosmic Rays) and several SPE (Solar Particle Events) enhanced radiation dose-rate measurements at Mars. The MARIE instrument provided a unique data set of radiation dose-rate at Mars from the active regions on the solar disk facing the Mars side. The SPE observations of October 2002 at Mars by the MARIE instrument are unique and there were no indications of these events towards the Earth at that time. Nearly 40 times increase in the quiet-time GCR dose-rate was noted from about 25 mradday to nearly 1000 mradday at Mars. Radiation dose-rate enhancement was not observed toward the Earth or in the Low Earth Orbit (LEO) during this time. Understanding the active regions on the Sun that are likely to result into SPE on the far side will also be of concern for future deep space explorations beyond LEO. We present the observations of these SPE enhanced dose rates due to the active regions from the far side of the Sun with the 3D visualization of solar disks facing Mars and Earth.

  19. Automatic recognition of piping system from laser scanned point clouds using normal-based region growing

    NASA Astrophysics Data System (ADS)

    Kawashima, K.; Kanai, S.; Date, H.

    2013-10-01

    In recent years, renovations of plant equipment have been more frequent, and constructing 3D as-built models of existing plants from large-scale laser scanned data is expected to make rebuilding processes more efficient. However, laser scanned data consists of enormous number of points, captures tangled objects and includes a high noise level, so that the manual reconstruction of a 3D model is very time-consuming. Among plant equipment, piping systems especially account for the greatest proportion. Therefore, the purpose of this research was to propose an algorithm which can automatically recognize a piping system from large-scale laser scanned data of plants. The straight portion of pipes, connecting parts and connection relationship of the piping system can be automatically recognized. Normal-based region growing enables the extraction of points on the piping system. Eigen analysis of the normal tensor and cylinder surface fitting allows the algorithm to recognize portions of straight pipes. Tracing the axes of the piping system and interpolation of the axes can derive connecting parts and connection relationships between elements of the piping system. The algorithm was applied to large-scale scanned data of an oil rig and a chemical plant. The recognition rate of straight pipes, elbows, junctions achieved 93%, 88% and 87% respectively.

  20. The 3D geometry of regional-scale dolerite saucer complexes and their feeders in the Secunda Complex, Karoo Basin

    NASA Astrophysics Data System (ADS)

    Coetzee, André; Kisters, Alexander

    2016-05-01

    Dolerites in the Karoo Basin of South Africa commonly represent kilometre-scale, interconnected saucer-shaped structures that consist of inner sills, bounded by inclined sheets connected to stratigraphically higher outer sills. Based on information from over 3000 boreholes and mining operations extending over an area of ca. 500 km2 and covering a > 3 km vertical section from Karoo strata into underlying basement rocks, this paper presents the results of a 3D modelling exercise that describes the geometry and spatial relationships of a regional-scale saucer complex, locally referred to as the number 8 sill, from the Secunda (coal mine) Complex in the northern parts of the Karoo Basin. The composite number 8 sill complex consists of three main dolerite saucers (dolerites A to C). These dolerite saucers are hosted by the Karoo Supergroup and the connectivity and geometry of the saucers support a lateral, sill-feeding-sill relationship between dolerite saucers A, B and C. The saucers are underlain and fed by a shallowly-dipping sheet (dolerite D) in the basement rocks below the Karoo sequence. The 3D geometric strata model agrees well with experimental results of saucer formation from underlying feeders in sedimentary basins, but demonstrates a more intricate relationship where a single feeder can give rise to several split level saucers in one regionally extensive saucer complex. More localised dome- or ridge-shape protrusions are common in the flat lying sill parts of the regional-scale saucers. We suggest a mode of emplacement for these kilometre-scale dome- and ridge structures having formed as a result of lobate magma flow processes. Magma lobes, propagating in different directions ahead of the main magma sheet, undergo successive episodes of lobe arrest and inflation. The inflation of lobes initiates failure of the overlying strata and the formation of curved faults. Magma exploiting these faults transgresses the stratigraphy and coalesces to form a ring

  1. Coupling ANIMO and MT3DMS for 3D regional-scale modeling of nutrient transport in soil and groundwater

    NASA Astrophysics Data System (ADS)

    Janssen, G.; Del Val Alonso, L.; Groenendijk, P.; Griffioen, J.

    2012-12-01

    We developed an on-line coupling between the 1D/quasi-2D nutrient transport model ANIMO and the 3D groundwater transport model code MT3DMS. ANIMO is a detailed, process-oriented model code for the simulation of nitrate leaching to groundwater, N- and P-loads on surface waters and emissions of greenhouse gasses. It is the leading nutrient fate and transport code in the Netherlands where it is used primarily for the evaluation of fertilization related legislation. In addition, the code is applied frequently in international research projects. MT3DMS is probably the most commonly used groundwater solute transport package worldwide. The on-line model coupling ANIMO-MT3DMS combines the state-of-the-art descriptions of the biogeochemical cycles in ANIMO with the advantages of using a 3D approach for the transport through the saturated domain. These advantages include accounting for regional lateral transport, considering groundwater-surface water interactions more explicitly, and the possibility of using MODFLOW to obtain the flow fields. An additional merit of the on-line coupling concept is that it preserves feedbacks between the saturated and unsaturated zone. We tested ANIMO-MT3DMS by simulating nutrient transport for the period 1970-2007 in a Dutch agricultural polder catchment covering an area of 118 km2. The transient groundwater flow field had a temporal resolution of one day and was calculated with MODFLOW-MetaSWAP. The horizontal resolution of the model grid was 100x100m and consisted of 25 layers of varying thickness. To keep computation times manageable, we prepared MT3DMS for parallel computing, which in itself is a relevant development for a large community of groundwater transport modelers. For the parameterization of the soil, we applied a standard classification approach, representing the area by 60 units with unique combinations of soil type, land use and geohydrological setting. For the geochemical parameterization of the deeper subsurface, however, we

  2. Regional-scale geomechanical impact assessment of underground coal gasification by coupled 3D thermo-mechanical modeling

    NASA Astrophysics Data System (ADS)

    Otto, Christopher; Kempka, Thomas; Kapusta, Krzysztof; Stańczyk, Krzysztof

    2016-04-01

    Underground coal gasification (UCG) has the potential to increase the world-wide coal reserves by utilization of coal deposits not mineable by conventional methods. The UCG process involves combusting coal in situ to produce a high-calorific synthesis gas, which can be applied for electricity generation or chemical feedstock production. Apart from its high economic potentials, UCG may induce site-specific environmental impacts such as fault reactivation, induced seismicity and ground subsidence, potentially inducing groundwater pollution. Changes overburden hydraulic conductivity resulting from thermo-mechanical effects may introduce migration pathways for UCG contaminants. Due to the financial efforts associated with UCG field trials, numerical modeling has been an important methodology to study coupled processes considering UCG performance. Almost all previous UCG studies applied 1D or 2D models for that purpose, that do not allow to predict the performance of a commercial-scale UCG operation. Considering our previous findings, demonstrating that far-field models can be run at a higher computational efficiency by using temperature-independent thermo-mechanical parameters, representative coupled simulations based on complex 3D regional-scale models were employed in the present study. For that purpose, a coupled thermo-mechanical 3D model has been developed to investigate the environmental impacts of UCG based on a regional-scale of the Polish Wieczorek mine located in the Upper Silesian Coal Basin. The model size is 10 km × 10 km × 5 km with ten dipping lithological layers, a double fault and 25 UCG reactors. Six different numerical simulation scenarios were investigated, considering the transpressive stress regime present in that part of the Upper Silesian Coal Basin. Our simulation results demonstrate that the minimum distance between the UCG reactors is about the six-fold of the coal seam thickness to avoid hydraulic communication between the single UCG

  3. Study on 3-D velocity structure of crust and upper mantle in Sichuan-yunnan region, China

    USGS Publications Warehouse

    Wang, C.; Mooney, W.D.; Wang, X.; Wu, J.; Lou, H.; Wang, F.

    2002-01-01

    Based on the first arrival P and S data of 4 625 regional earthquakes recorded at 174 stations dispersed in the Yunnan and Sichuan Provinces, the 3-D velocity structure of crust and upper mantle in the region is determined, incorporating with previous deep geophysical data. In the upper crust, a positive anomaly velocity zone exists in the Sichuan basin, whereas a negative anomaly velocity zone exists in the western Sichuan plateau. The boundary between the positive and negative anomaly zones is the Longmenshan fault zone. The images of lower crust and upper mantle in the Longmenshan fault, Xianshuihe fault, Honghe fault and others appear the characteristic of tectonic boundary, indicating that the faults litely penetrate the Moho discontinuity. The negative velocity anomalies at the depth of 50 km in the Tengchong volcanic area and the Panxi tectonic zone appear to be associated with the temperature and composition variations in the upper mantle. The overall features of the crustal and the upper mantle structures in the Sichuan-Yunnan region are the lower average velocity in both crust and uppermost mantle, the large crustal thickness variations, and the existence of high conductivity layer in the crust or/and upper mantle, and higher geothermal value. All these features are closely related to the collision between the Indian and the Asian plates. The crustal velocity in the Sichuan-Yunnan rhombic block generally shows normal.value or positive anomaly, while the negative anomaly exists in the area along the large strike-slip faults as the block boundary. It is conducive to the crustal block side-pressing out along the faults. In the major seismic zones, the seismicity is relative to the negative anomaly velocity. Most strong earthquakes occurred in the upper-mid crust with positive anomaly or normal velocity, where the negative anomaly zone generally exists below.

  4. 3-D P- and S-wave velocity structure and low-frequency earthquake locations in the Parkfield, California region

    NASA Astrophysics Data System (ADS)

    Zeng, Xiangfang; Thurber, Clifford H.; Shelly, David R.; Harrington, Rebecca M.; Cochran, Elizabeth S.; Bennington, Ninfa L.; Peterson, Dana; Guo, Bin; McClement, Kara

    2016-09-01

    To refine the 3-D seismic velocity model in the greater Parkfield, California region, a new data set including regular earthquakes, shots, quarry blasts and low-frequency earthquakes (LFEs) was assembled. Hundreds of traces of each LFE family at two temporary arrays were stacked with time-frequency domain phase weighted stacking method to improve signal-to-noise ratio. We extend our model resolution to lower crustal depth with LFE data. Our result images not only previously identified features but also low velocity zones (LVZs) in the area around the LFEs and the lower crust beneath the southern Rinconada Fault. The former LVZ is consistent with high fluid pressure that can account for several aspects of LFE behaviour. The latter LVZ is consistent with a high conductivity zone in magnetotelluric studies. A new Vs model was developed with S picks that were obtained with a new autopicker. At shallow depth, the low Vs areas underlie the strongest shaking areas in the 2004 Parkfield earthquake. We relocate LFE families and analyse the location uncertainties with the NonLinLoc and tomoDD codes. The two methods yield similar results.

  5. Hypocenter relocation using a fast grid search method and a 3-D seismic velocity model for the Sumatra region

    SciTech Connect

    Nugroho, Hendro; Widiyantoro, Sri; Nugraha, Andri Dian

    2013-09-09

    Determination of earthquake hypocenter in Indonesia conducted by the Meteorological, Climatological, and Geophysical Agency (MCGA) has still used a 1-D seismic velocity model. In this research, we have applied a Fast Grid Search (FGM) method and a 3-D velocity model resulting from tomographic imaging to relocate earthquakes in the Sumatran region. The data were taken from the MCGA data catalog from 2009 to 2011 comprising of subduction zone and on land fault earthquakes with magnitude greater than 4 Mw. Our preliminary results show some significant changes in the depths of the relocated earthquakes which are in general deeper than the depths of hypocenters from the MCGA data catalog. The residual times resulting from the relocation process are smaller than those prior to the relocation. Encouraged by these results, we will continue to conduct hypocenter relocation for all events from the MCGA data catalog periodically in order to produce a new data catalog with good quality. We hope that the new data catalog will be useful for further studies.

  6. Calibration of 3D Upper Mantle Structure in Eurasia Using Regional and Teleseismic Full Waveform Seismic Data

    SciTech Connect

    Barbara Romanowicz; Mark Panning

    2005-04-23

    Adequate path calibrations are crucial for improving the accuracy of seismic event location and origin time, size, and mechanism, as required for CTBT monitoring. There is considerable information on structure in broadband seismograms that is currently not fully utilized. The limitations have been largely theoretical. the development and application to solid earth problems of powerful numerical techniques, such as the Spectral Element Method (SEM), has opened a new era, and theoretically, it should be possible to compute the complete predicted wavefield accurately without any restrictions on the strength or spatial extent of heterogeneity. This approach requires considerable computational power, which is currently not fully reachable in practice. We propose an approach which relies on a cascade of increasingly accurate theoretical approximations for the computation of the seismic wavefield to develop a model of regional structure for the area of Eurasia located between longitudes of 30 and 150 degrees E, and latitudes of -10 to 60 degrees North. The selected area is particularly suitable for the purpose of this experiment, as it is highly heterogeneous, presenting a challenge for calibration purposes, but it is well surrounded by earthquake sources and, even though they are sparsely distributed, a significant number of high quality broadband digital stations exist, for which data are readily accessible through IRIS (Incorporated Research Institutions for Seismology) and the FDSN (Federation of Digital Seismic Networks). The starting models used will be a combination of a-priori 3D models recently developed for this region, combining various geophysical and seismological data, and a major goal of this study will be to refine these models so as to fit a variety of seismic waveforms and phases.

  7. Data Fusion of LIDAR Into a Region Growing Stereo Algorithm

    NASA Astrophysics Data System (ADS)

    Veitch-Michaelis, J.; Muller, J.-P.; Storey, J.; Walton, D.; Foster, M.

    2015-05-01

    Stereo vision and LIDAR continue to dominate standoff 3D measurement techniques in photogrammetry although the two techniques are normally used in competition. Stereo matching algorithms generate dense 3D data, but perform poorly on low-texture image features. LIDAR measurements are accurate, but imaging requires scanning and produces sparse point clouds. Clearly the two techniques are complementary, but recent attempts to improve stereo matching performance on low-texture surfaces using data fusion have focused on the use of time-of-flight cameras, with comparatively little work involving LIDAR. A low-level data fusion method is shown, involving a scanning LIDAR system and a stereo camera pair. By directly imaging the LIDAR laser spot during a scan, unique stereo correspondences are obtained. These correspondences are used to seed a regiongrowing stereo matcher until the whole image is matched. The iterative nature of the acquisition process minimises the number of LIDAR points needed. This method also enables simple calibration of stereo cameras without the need for targets and trivial coregistration between the stereo and LIDAR point clouds. Examples of this data fusion technique are provided for a variety of scenes.

  8. Best Merge Region Growing Segmentation with Integrated Non-Adjacent Region Object Aggregation

    NASA Technical Reports Server (NTRS)

    Tilton, James C.; Tarabalka, Yuliya; Montesano, Paul M.; Gofman, Emanuel

    2012-01-01

    Best merge region growing normally produces segmentations with closed connected region objects. Recognizing that spectrally similar objects often appear in spatially separate locations, we present an approach for tightly integrating best merge region growing with non-adjacent region object aggregation, which we call Hierarchical Segmentation or HSeg. However, the original implementation of non-adjacent region object aggregation in HSeg required excessive computing time even for moderately sized images because of the required intercomparison of each region with all other regions. This problem was previously addressed by a recursive approximation of HSeg, called RHSeg. In this paper we introduce a refined implementation of non-adjacent region object aggregation in HSeg that reduces the computational requirements of HSeg without resorting to the recursive approximation. In this refinement, HSeg s region inter-comparisons among non-adjacent regions are limited to regions of a dynamically determined minimum size. We show that this refined version of HSeg can process moderately sized images in about the same amount of time as RHSeg incorporating the original HSeg. Nonetheless, RHSeg is still required for processing very large images due to its lower computer memory requirements and amenability to parallel processing. We then note a limitation of RHSeg with the original HSeg for high spatial resolution images, and show how incorporating the refined HSeg into RHSeg overcomes this limitation. The quality of the image segmentations produced by the refined HSeg is then compared with other available best merge segmentation approaches. Finally, we comment on the unique nature of the hierarchical segmentations produced by HSeg.

  9. Automatic reconstruction of 3D urban landscape by computing connected regions and assigning them an average altitude from LiDAR point cloud image

    NASA Astrophysics Data System (ADS)

    Kawata, Yoshiyuki; Koizumi, Kohei

    2014-10-01

    The demand of 3D city modeling has been increasing in many applications such as urban planing, computer gaming with realistic city environment, car navigation system with showing 3D city map, virtual city tourism inviting future visitors to a virtual city walkthrough and others. We proposed a simple method for reconstructing a 3D urban landscape from airborne LiDAR point cloud data. The automatic reconstruction method of a 3D urban landscape was implemented by the integration of all connected regions, which were extracted and extruded from the altitude mask images. These mask images were generated from the gray scale LiDAR image by the altitude threshold ranges. In this study we demonstrated successfully in the case of Kanazawa city center scene by applying the proposed method to the airborne LiDAR point cloud data.

  10. Attenuation correction with region growing method used in the positron emission mammography imaging system

    NASA Astrophysics Data System (ADS)

    Gu, Xiao-Yue; Li, Lin; Yin, Peng-Fei; Yun, Ming-Kai; Chai, Pei; Huang, Xian-Chao; Sun, Xiao-Li; Wei, Long

    2015-10-01

    The Positron Emission Mammography imaging system (PEMi) provides a novel nuclear diagnosis method dedicated for breast imaging. With a better resolution than whole body PET, PEMi can detect millimeter-sized breast tumors. To address the requirement of semi-quantitative analysis with a radiotracer concentration map of the breast, a new attenuation correction method based on a three-dimensional seeded region growing image segmentation (3DSRG-AC) method has been developed. The method gives a 3D connected region as the segmentation result instead of image slices. The continuity property of the segmentation result makes this new method free of activity variation of breast tissues. The threshold value chosen is the key process for the segmentation method. The first valley in the grey level histogram of the reconstruction image is set as the lower threshold, which works well in clinical application. Results show that attenuation correction for PEMi improves the image quality and the quantitative accuracy of radioactivity distribution determination. Attenuation correction also improves the probability of detecting small and early breast tumors. Supported by Knowledge Innovation Project of The Chinese Academy of Sciences (KJCX2-EW-N06)

  11. Automated lung tumor segmentation for whole body PET volume based on novel downhill region growing

    NASA Astrophysics Data System (ADS)

    Ballangan, Cherry; Wang, Xiuying; Eberl, Stefan; Fulham, Michael; Feng, Dagan

    2010-03-01

    We propose an automated lung tumor segmentation method for whole body PET images based on a novel downhill region growing (DRG) technique, which regards homogeneous tumor hotspots as 3D monotonically decreasing functions. The method has three major steps: thoracic slice extraction with K-means clustering of the slice features; hotspot segmentation with DRG; and decision tree analysis based hotspot classification. To overcome the common problem of leakage into adjacent hotspots in automated lung tumor segmentation, DRG employs the tumors' SUV monotonicity features. DRG also uses gradient magnitude of tumors' SUV to improve tumor boundary definition. We used 14 PET volumes from patients with primary NSCLC for validation. The thoracic region extraction step achieved good and consistent results for all patients despite marked differences in size and shape of the lungs and the presence of large tumors. The DRG technique was able to avoid the problem of leakage into adjacent hotspots and produced a volumetric overlap fraction of 0.61 +/- 0.13 which outperformed four other methods where the overlap fraction varied from 0.40 +/- 0.24 to 0.59 +/- 0.14. Of the 18 tumors in 14 NSCLC studies, 15 lesions were classified correctly, 2 were false negative and 15 were false positive.

  12. Automated measurement of epidermal thickness from optical coherence tomography images using line region growing

    NASA Astrophysics Data System (ADS)

    Delacruz, Jomer; Weissman, Jesse; Gossage, Kirk

    2010-02-01

    Optical Coherence Tomography (OCT) is a non-invasive imaging modality that acquires cross sectional images of tissue in-vivo. It accelerates skin diagnosis by eliminating invasive biopsy and laborious histology in the process. Dermatologists have widely used it for looking at morphology of skin diseases such as psoriasis, dermatitis, basal cell carcinoma etc. Skin scientists have also successfully used it for looking at differences in epidermal thickness and its underlying structure with respect to age, body sites, ethnicity, gender, and other related factors. Similar to other in-vivo imaging systems, OCT images suffer from a high degree of speckle and noise content, which hinders examination of tissue structures. Most of the previous work in OCT segmentation of skin was done manually. This compromised the quality of the results by limiting the analyses to a few frames per area. In this paper, we discuss a region growing method for automatic identification of the upper and lower boundaries of the epidermis in living human skin tissue. This image analysis method utilizes images obtained from a frequency-domain OCT. This system is high-resolution and high-speed, and thus capable of capturing volumetric images of the skin in short time. The three-dimensional (3D) data provides additional information that is used in the segmentation process to help compensate for the inherent noise in the images. This method not only provides a better estimation of the epidermal thickness, but also generates a 3D surface map of the epidermal-dermal junction, from which underlying topography can be visualized and further quantified.

  13. Coronal and transition-region Doppler shifts of an active region 3D-MHD model as indicator for the magnetic activity cycle of solar-like stars

    NASA Astrophysics Data System (ADS)

    Bourdin, Philippe A.

    2015-08-01

    For the Sun and solar-like stars, Doppler blueshifts are observed in the hot corona, while in average redshifts are seen in the cooler transition region layer below the corona. This clearly contradicts the idea of a continuous flow-equilibrium starting from a star's atmosphere and forming the stellar wind. To explain this, we implement a 3D-MHD model of the solar corona above an observed active region and use an atomic database to obtain the emission from the million Kelvin hot plasma. The generated EUV-bright loops system from the model compares well to the observed coronal loops. Therefore, we have access to realistic plasma parameters, including the flow dynamics within the active region core, and can derive total spectra as if we look the Sun as a star. We compare the model spectra to actual statistical observations of the Sun taken at different magnetic activity levels. We find characteristic Doppler-shift statistics that can be used to identify the magnetic activity state of the Sun and solar-like stars. This should help to model the variability of such stars by inferring their activity level from total spectra of coronal and transition-region emission lines.

  14. Impact of assimilation of INSAT-3D retrieved atmospheric motion vectors on short-range forecast of summer monsoon 2014 over the South Asian region

    NASA Astrophysics Data System (ADS)

    Kumar, Prashant; Deb, Sanjib K.; Kishtawal, C. M.; Pal, P. K.

    2016-01-01

    The Weather Research and Forecasting (WRF) model and its three-dimensional variational data assimilation system are used in this study to assimilate the INSAT-3D, a recently launched Indian geostationary meteorological satellite derived from atmospheric motion vectors (AMVs) over the South Asian region during peak Indian summer monsoon month (i.e., July 2014). A total of four experiments were performed daily with and without assimilation of INSAT-3D-derived AMVs and the other AMVs available through Global Telecommunication System (GTS) for the entire month of July 2014. Before assimilating these newly derived INSAT-3D AMVs in the numerical model, a preliminary evaluation of these AMVs is performed with National Centers for Environmental Prediction (NCEP) final model analyses. The preliminary validation results show that root-mean-square vector difference (RMSVD) for INSAT-3D AMVs is ˜3.95, 6.66, and 5.65 ms-1 at low, mid, and high levels, respectively, and slightly more RMSVDs are noticed in GTS AMVs (˜4.0, 8.01, and 6.43 ms-1 at low, mid, and high levels, respectively). The assimilation of AMVs has improved the WRF model of produced wind speed, temperature, and moisture analyses as well as subsequent model forecasts over the Indian Ocean, Arabian Sea, Australia, and South Africa. Slightly more improvements are noticed in the experiment where only the INSAT-3D AMVs are assimilated compared to the experiment where only GTS AMVs are assimilated. The results also show improvement in rainfall predictions over the Indian region after AMV assimilation. Overall, the assimilation of INSAT-3D AMVs improved the WRF model short-range predictions over the South Asian region as compared to control experiments.

  15. Electric fields and field-aligned currents in polar regions of the solar corona: 3-D MHD consideration

    NASA Technical Reports Server (NTRS)

    Pisanko, Yu. V.

    1995-01-01

    The calculation of the solar rotation electro-dynamical effects in the near-the-Sun solar wind seems more convenient from the non-inertial corotating reference frame. This implies some modification of the 3-D MHD equations generally on the base of the General Theory of Relativity. The paper deals with the search of stationary (in corotating non-inertial reference frame) solutions of the modified 3-D MHD equations for the in near-the-Sun high latitude sub-alfvenic solar wind. The solution is obtained requiring electric fields and field-aligned electric currents in the high latitude near-the-Sun solar wind. Various scenario are explored self-consistently via a number of numerical experiments. The analogy with the high latitude Earth's magnetosphere is used for the interpretation of the results. Possible observational manifestations are discussed.

  16. Stereo-Based Region-Growing using String Matching

    NASA Technical Reports Server (NTRS)

    Mandelbaum, Robert; Mintz, Max

    1995-01-01

    We present a novel stereo algorithm based on a coarse texture segmentation preprocessing phase. Matching is performed using a string comparison. Matching sub-strings correspond to matching sequences of textures. Inter-scanline clustering of matching sub-strings yields regions of matching texture. The shape of these regions yield information concerning object's height, width and azimuthal position relative to the camera pair. Hence, rather than the standard dense depth map, the output of this algorithm is a segmentation of objects in the scene. Such a format is useful for the integration of stereo with other sensor modalities on a mobile robotic platform. It is also useful for localization; the height and width of a detected object may be used for landmark recognition, while depth and relative azimuthal location determine pose. The algorithm does not rely on the monotonicity of order of image primitives. Occlusions, exposures, and foreshortening effects are not problematic. The algorithm can deal with certain types of transparencies. It is computationally efficient, and very amenable to parallel implementation. Further, the epipolar constraints may be relaxed to some small but significant degree. A version of the algorithm has been implemented and tested on various types of images. It performs best on random dot stereograms, on images with easily filtered backgrounds (as in synthetic images), and on real scenes with uncontrived backgrounds.

  17. 3D Cloud Radiative Effects on Aerosol Optical Thickness Retrievals in Cumulus Cloud Fields in the Biomass Burning Region in Brazil

    NASA Technical Reports Server (NTRS)

    Wen, Guo-Yong; Marshak, Alexander; Cahalan, Robert F.

    2004-01-01

    Aerosol amount in clear regions of a cloudy atmosphere is a critical parameter in studying the interaction between aerosols and clouds. Since the global cloud cover is about 50%, cloudy scenes are often encountered in any satellite images. Aerosols are more or less transparent, while clouds are extremely reflective in the visible spectrum of solar radiation. The radiative transfer in clear-cloudy condition is highly three- dimensional (3D). This paper focuses on estimating the 3D effects on aerosol optical thickness retrievals using Monte Carlo simulations. An ASTER image of cumulus cloud fields in the biomass burning region in Brazil is simulated in this study. The MODIS products (i-e., cloud optical thickness, particle effective radius, cloud top pressure, surface reflectance, etc.) are used to construct the cloud property and surface reflectance fields. To estimate the cloud 3-D effects, we assume a plane-parallel stratification of aerosol properties in the 60 km x 60 km ASTER image. The simulated solar radiation at the top of the atmosphere is compared with plane-parallel calculations. Furthermore, the 3D cloud radiative effects on aerosol optical thickness retrieval are estimated.

  18. Evaluation of 3D pre-treatment verification for volumetric modulated arc therapy plan in head region

    NASA Astrophysics Data System (ADS)

    Ruangchan, S.; Oonsiri, S.; Suriyapee, S.

    2016-03-01

    The development of pre-treatment QA tools contributes to the three dimension (3D) dose verification using the calculation software with the measured planar dose distribution. This research is aimed to evaluate the Sun Nuclear 3DVH software with Thermo luminescence dosimeter (TLD) measurement. The two VMAT patient plans (2.5 arcs) of 6 MV photons with different PTV locations were transferred to the Rando phantom images. The PTV of the first plan located in homogeneous area and vice versa in the second plan. For treatment planning process, the Rando phantom images were employed in optimization and calculation with the PTV, brain stem, lens and TLD position contouring. The verification plans were created, transferred to the ArcCHECK for measurement and calculated the 3D dose using 3DVH software. The range of the percent dose differences in both PTV and organ at risk (OAR) between TLD and 3DVH software of the first and the second plans were -2.09 to 3.87% and -1.39 to 6.88%, respectively. The mean percent dose differences for the PTV were 1.62% and 3.93% for the first and the second plans, respectively. In conclusion, the 3DVH software results show good agreement with TLD when the tumor located in the homogeneous area.

  19. 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture

    PubMed Central

    Topp, Christopher N.; Iyer-Pascuzzi, Anjali S.; Anderson, Jill T.; Lee, Cheng-Ruei; Zurek, Paul R.; Symonova, Olga; Zheng, Ying; Bucksch, Alexander; Mileyko, Yuriy; Galkovskyi, Taras; Moore, Brad T.; Harer, John; Edelsbrunner, Herbert; Mitchell-Olds, Thomas; Weitz, Joshua S.; Benfey, Philip N.

    2013-01-01

    Identification of genes that control root system architecture in crop plants requires innovations that enable high-throughput and accurate measurements of root system architecture through time. We demonstrate the ability of a semiautomated 3D in vivo imaging and digital phenotyping pipeline to interrogate the quantitative genetic basis of root system growth in a rice biparental mapping population, Bala × Azucena. We phenotyped >1,400 3D root models and >57,000 2D images for a suite of 25 traits that quantified the distribution, shape, extent of exploration, and the intrinsic size of root networks at days 12, 14, and 16 of growth in a gellan gum medium. From these data we identified 89 quantitative trait loci, some of which correspond to those found previously in soil-grown plants, and provide evidence for genetic tradeoffs in root growth allocations, such as between the extent and thoroughness of exploration. We also developed a multivariate method for generating and mapping central root architecture phenotypes and used it to identify five major quantitative trait loci (r2 = 24–37%), two of which were not identified by our univariate analysis. Our imaging and analytical platform provides a means to identify genes with high potential for improving root traits and agronomic qualities of crops. PMID:23580618

  20. 3D High-Resolution Seismic Tomography in the Upper Mantle of Gulf of California Region by SEM Seismogram Simulation and Adjoint Inversion

    NASA Astrophysics Data System (ADS)

    Wang, Y.; Forsyth, D. W.; Savage, B.

    2010-12-01

    In our previous surface wave study in Gulf of California area, we developed a moderate-resolution 3D shear velocity model by employing two-plane wave field representation array technique and 2D finite frequency kernels based on Born’s approximation. Using both amplitude and phase information of 22-111s teleseismic Rayleigh wave, we were able to constrain a lateral resolution on the order of 100 km in the upper 160 km depth. In order to enhance resolution beneath the highly heterogeneous Gulf region, we carry on further study using Spectral element method (SEM) for forward wave propagation simulation and adjoint method for tomographic inversion. The code we are using is SPECFEM3D_GLOBE by Komatitsch and Tromp et al. To enhance the resolution in the Gulf, we will minimize the waveform difference between the regional earthquake seismograms, recorded by NARS-Baja seismic array and stations in southern California, and synthetic seismograms simulated by SEM, to iteratively update the current model based on an adjoint inversion. Taking our current 3D moderate-resolution model as starting point and a recently developed crustal structure of Gulf region should help to reduce the number of iterations. There are two reasons that resolution should be enhanced compared to surface wave tomography: first, regional events contain more high frequency signals than teleseismic events; second, SEM is a full waveform synthesis method avoiding many of the usual approximations in tomographic studies. Improved tomographic images of 3D velocity heterogeneities in the upper mantle of Gulf of California will help to identify compositional and temperature variations, leading to a better understanding of mantle dynamics in the region.

  1. 3D Reconstruction For The Detection Of Cranial Anomalies

    NASA Astrophysics Data System (ADS)

    Kettner, B.; Shalev, S.; Lavelle, C.

    1986-01-01

    There is a growing interest in the use of three-dimensional (3D) cranial reconstruction from CT scans for surgical planning. A low-cost imaging system has been developed, which provides pseudo-3D images which may be manipulated to reveal the craniofacial skeleton as a whole or any particular component region. The contrast between congenital (hydrocephalic), normocephalic and acquired (carcinoma of the maxillary sinus) anomalous cranial forms demonstrates the potential of this system.

  2. Novel Vertical 3D Structure of TaOx-based RRAM with Self-localized Switching Region by Sidewall Electrode Oxidation

    NASA Astrophysics Data System (ADS)

    Yu, Muxi; Cai, Yimao; Wang, Zongwei; Fang, Yichen; Liu, Yefan; Yu, Zhizhen; Pan, Yue; Zhang, Zhenxing; Tan, Jing; Yang, Xue; Li, Ming; Huang, Ru

    2016-02-01

    A novel vertical 3D RRAM structure with greatly improved reliability behavior is proposed and experimentally demonstrated through basically compatible process featuring self-localized switching region by sidewall electrode oxidation. Compared with the conventional structure, due to the effective confinement of the switching region, the newly-proposed structure shows about two orders higher endurance (>108 without verification operation) and better retention (>180h@150 °C), as well as high uniformity. Corresponding model is put forward, on the base of which thorough theoretical analysis and calculations are conducted as well, demonstrating that, resulting from the physically-isolated switching from neighboring cells, the proposed structure exhibits dramatically improved reliability due to effective suppression of thermal effects and oxygen vacancies diffusion interference, indicating that this novel structure is very promising for future high density 3D RRAM application.

  3. Novel Vertical 3D Structure of TaOx-based RRAM with Self-localized Switching Region by Sidewall Electrode Oxidation

    PubMed Central

    Yu, Muxi; Cai, Yimao; Wang, Zongwei; Fang, Yichen; Liu, Yefan; Yu, Zhizhen; Pan, Yue; Zhang, Zhenxing; Tan, Jing; Yang, Xue; Li, Ming; Huang, Ru

    2016-01-01

    A novel vertical 3D RRAM structure with greatly improved reliability behavior is proposed and experimentally demonstrated through basically compatible process featuring self-localized switching region by sidewall electrode oxidation. Compared with the conventional structure, due to the effective confinement of the switching region, the newly-proposed structure shows about two orders higher endurance (>108 without verification operation) and better retention (>180h@150 °C), as well as high uniformity. Corresponding model is put forward, on the base of which thorough theoretical analysis and calculations are conducted as well, demonstrating that, resulting from the physically-isolated switching from neighboring cells, the proposed structure exhibits dramatically improved reliability due to effective suppression of thermal effects and oxygen vacancies diffusion interference, indicating that this novel structure is very promising for future high density 3D RRAM application. PMID:26884054

  4. Geographically Sourcing Cocaine's Origin - Delineation of the Nineteen Major Coca Growing Regions in South America.

    PubMed

    Mallette, Jennifer R; Casale, John F; Jordan, James; Morello, David R; Beyer, Paul M

    2016-01-01

    Previously, geo-sourcing to five major coca growing regions within South America was accomplished. However, the expansion of coca cultivation throughout South America made sub-regional origin determinations increasingly difficult. The former methodology was recently enhanced with additional stable isotope analyses ((2)H and (18)O) to fully characterize cocaine due to the varying environmental conditions in which the coca was grown. An improved data analysis method was implemented with the combination of machine learning and multivariate statistical analysis methods to provide further partitioning between growing regions. Here, we show how the combination of trace cocaine alkaloids, stable isotopes, and multivariate statistical analyses can be used to classify illicit cocaine as originating from one of 19 growing regions within South America. The data obtained through this approach can be used to describe current coca cultivation and production trends, highlight trafficking routes, as well as identify new coca growing regions. PMID:27006288

  5. Analyses of Magnetic Structures of Active Region 11117 Evolution using a 3D Data-Driven Magnetohydrodynamic Model

    NASA Astrophysics Data System (ADS)

    Wu, Shi; Jiang, Chaowei; Feng, Xueshang

    We use the photospheric vector magnetograms obtained by Helioseismic and Magnetic Image (HMI) on-board the Solar Dynamic Observatory (SDO) as the boundary conditions for a Data-Driven CESE-MHD model (Jiang et al. 2012) to investigate the physical characteristics and evolution of magnetic field configurations in the corona before and after a solar eruptive event. Specifically, the evolution of AR11117 characteristics such as length of magnetic shear along the neutral line, current helicity, magnetic free energy and the energy flux across the photosphere due to flux emergence and surface flow are presented. The computed 3D magnetic field configuration are compared with AIA (Atmosphere Image Assembly) which shows remarkable resemblance. A topological analyses reveals that the small flare is correlated with a bald patch (BP, where the magnetic field is tangent to the photosphere), suggesting that the energy release of the flare is caused by magnetic reconnection associated with the BP separatrices. The total magnetic flux and energy keep increasing slightly in spite of flare, while the computed magnetic free energy drops during the flare by 10 (30) ergs which is adequate in providing the energy budget of a minor C-class confined flare as observed. Jiang, Chaowei, Xueshang, Feng, S. T Wu and Qiang Hu, Ap. J., 759:85, 2012 Nov 10

  6. Recursive Hierarchical Image Segmentation by Region Growing and Constrained Spectral Clustering

    NASA Technical Reports Server (NTRS)

    Tilton, James C.

    2002-01-01

    This paper describes an algorithm for hierarchical image segmentation (referred to as HSEG) and its recursive formulation (referred to as RHSEG). The HSEG algorithm is a hybrid of region growing and constrained spectral clustering that produces a hierarchical set of image segmentations based on detected convergence points. In the main, HSEG employs the hierarchical stepwise optimization (HS WO) approach to region growing, which seeks to produce segmentations that are more optimized than those produced by more classic approaches to region growing. In addition, HSEG optionally interjects between HSWO region growing iterations merges between spatially non-adjacent regions (i.e., spectrally based merging or clustering) constrained by a threshold derived from the previous HSWO region growing iteration. While the addition of constrained spectral clustering improves the segmentation results, especially for larger images, it also significantly increases HSEG's computational requirements. To counteract this, a computationally efficient recursive, divide-and-conquer, implementation of HSEG (RHSEG) has been devised and is described herein. Included in this description is special code that is required to avoid processing artifacts caused by RHSEG s recursive subdivision of the image data. Implementations for single processor and for multiple processor computer systems are described. Results with Landsat TM data are included comparing HSEG with classic region growing. Finally, an application to image information mining and knowledge discovery is discussed.

  7. Automated Boundary-Extraction and Region-Growing Techniques Applied to Solar Magnetograms

    NASA Technical Reports Server (NTRS)

    McAteer, R. T. James; Gallagher, Peter; Ireland, Jack; Young, C Alex

    2005-01-01

    We present an automated approach to active region extraction from full disc MDI longitudinal magnetograms. This uses a region-growing technique in conjunction with boundary-extraction to define a number of enclosed contours as belonging to separate regions of magnetic significance on the solar disc. This provides an objective definition of active regions and areas of plage on the Sun. A number of parameters relating to the flare-potential of each region is discussed.

  8. Using 1-to-3D modeling approach to constrain thermomechanical evolution of the Dead Sea Transform region

    NASA Astrophysics Data System (ADS)

    Petrunin, Alexey G.; Meneses Rioseco, Ernesto; Sobolev, Stephan V.

    2010-05-01

    (BBS) approach (Petrunin and Sobolev, Geology 2006, PEPI 2008) and estimate the present-day thickness of the brittle layer near the DST as 20-22 km. As a result of the 2.5 D modeling, we significantly narrow down the ranges of model parameters. At the final stage we check the obtained parameters using the 3D model of the Dead Sea basin similar to (Petrunin and Sobolev, Geology 2006) that gives good correlation with the sedimentary subsidence rate and present-day geometry of the basin.

  9. Modeling the physical structure of star-forming regions with LIME, a 3D radiative transfer code

    NASA Astrophysics Data System (ADS)

    Quénard, D.; Bottinelli, S.; Caux, E.

    2016-05-01

    The ability to predict line emission is crucial in order to make a comparison with observations. From LTE to full radiative transfer codes, the goal is always to derive the most accurately possible the physical properties of the source. Non-LTE calculations can be very time consuming but are needed in most of the cases since many studied regions are far from LTE.

  10. 3D-Stereoscopic Analysis of Solar Active Region Loops: I: SoHo/EIT Observations at Temperatures of 1.0-1.5 MK

    NASA Technical Reports Server (NTRS)

    Aschwanden, Markus J.; Newmark, Jeff; Delaboudiniere, Jean-Pierre; Neupert, Werner M.; Portier-Fozzani, Fabrice; Gary, G. Allen; Zucker, Arik

    1998-01-01

    The three-dimensional (3D) structure of solar active region NOAA 7986 observed on 1996 August 30 with the Extrem-ultraviolet Imaging Telescope (EIT) onboard the Solar and Heliospheric Observatory (SoHO) is analyzed. We develop a new method of Dynamic Stereoscopy to reconstruct the 3D geometry of dynamically changing loops, which allows us to determine the orientation of the loop plane with respect to the line-of-sight, a prerequisite to correct properly for projection effects in 3D loop models. With this method and the filter-ratio technique applied to EIT 171 A and 195 A images we determine the 3D coordinates (x(s), y(s), z(s)), the loop width) w(s), the electron density n(sub e)(s), and the electron temperature T(sub e)(s) as function of the loop length s for 30 loop segments. Fitting the loop densities with an exponential density model n(sub e)(h) we find that the so inferred scale height temperatures, T(sub e)(sup lambda) = 1.22 +/- 0.23 MK, match closely the EIT filter-ratio temperatures, T(sub e)(sup FIT) = 1.21 +/- 0.06 MK. We conclude that these rather large-scale loops (with heights of h approx. equals 50 - 200 Mm) that dominate EIT 171 A images are close to thermal equilibrium. Most of the loops show no significant thickness variation w(s), but many exhibit a trend of increasing temperature (dT/ds greater than 0) above the footpoint.

  11. Calculation of the 3-D viscous flow at the endwall leading edge region of an axial annular turbine cascade

    NASA Technical Reports Server (NTRS)

    Walitt, L.

    1984-01-01

    A three-dimensional viscous computer code (VANS/MD) was employed to calculate the turbulent flow field at the end wall leading edge region of a 20 inch axial annular turbine cascade. The initial boundary layer roll-up and formation of the end wall vortices were computed at the vane leading edge. The calculated flow field was found to be periodic with a frequency of approximately 1600 Hz. The calculated size of the separation region for the hub endwall vortex compared favorably with measured endwall oil traces. In an effort to determine the effects of the turbulence model on the calculated unsteadiness, a laminar calculation was made. The periodic nature of the calculated flow field persisted with the frequency essentially unchanged.

  12. Scarce water resources and scarce data: Estimating recharge for a complex 3D groundwater flow model in arid regions

    NASA Astrophysics Data System (ADS)

    Gräbe, A. C.; Guttman, J.; Rödiger, T.; Siebert, C.; Merz, R.; Kolditz, O.

    2012-12-01

    Semi-arid to arid regions are usually characterized by a scarcity of precipitation and a lack of stream flow. Especially in desert environments, groundwater is one of the most important fresh water sources and its recharge is basically controlled by two main mechanisms: the direct regional infiltration of precipitation in the mountains and interdrainage areas in the first place and secondly the flood water infiltration through ephemeral channel beds (transmission loss). Due to extensive spatio-temporal data scarcity, direct quantitative estimations of groundwater recharge are often difficult to perform, and numerical models simulating the water fluxes, have to be applied to enable a quantitative approximation of the groundwater recharge. We made an assumption about the quantity of recharge for the subsurface catchment of the western Dead Sea escarpment, which is at the same time the input for the complex groundwater flow model of the Judea Group Aquifer. This can only be suggested if the hydrogeological situation in the tectonically complex region is fully understood. A number of simplified models of the Judea Group aquifer have been formulated and employed using a two-dimensional (one horizontal layered) numerical simulation of groundwater flow (Baida et al. 1978; Goldschtoff & Shachnai, 1980; Guttman, 2000; Laronne Ben-Itzhak & Gvirtzmann, 2005). However, all previous approaches focused only on a limited area of the Judea Group aquifer. We developed a high resolution regional groundwater flow model for the entire western basin of the Dead Sea. Whereas the structural model could be defined using a large geological dataset, the challenge was to generate the groundwater flow model with only limited well data. With the help of the scientific software OpenGeoSys (OGS) the challenge was reliably solved resulting in a simulation of the hydraulic characteristics (hydraulic conductivity and hydraulic head) of the cretaceous aquifer system, which was calibrated using PEST.

  13. Application of surface wave travel times and amplitude ratios interpreted through a 3D crustal model to locate and characterize regional seismic events in the US

    NASA Astrophysics Data System (ADS)

    Tian, Y.; Ritzwoller, M. H.; Shen, W.; Levshin, A. L.; Barmin, M. P.

    2014-12-01

    The error in the epicentral location of crustal earthquakes across the contiguous US is on the order of 10 km due to the inability of 1D seismic velocity models to capture regional body wave travel time variations. New high resolution 3D models of the crust and uppermost mantle have been constructed recently across the US by inverting surface wave dispersion from ambient noise and earthquakes, receiver functions, and Rayleigh wave H/V ratios using USArray data [e.g., Shen et al., 2013]. These are mostly S-wave models of the lithosphere, however, which are not optimal for predicting regional P-wave travel times. We explore the use of observations of surface waves to improve regional event characterization because the new 3D models are constructed explicitly to model their behavior. In particular, we use measurements of group and phase time delays and the amplitude ratio between different periods of surface waves to estimate the moment tensor, the epicentral location and the earthquake depth. Preliminary estimates of these variables are determined through a simulated annealing algorithm. Afterward, a Bayesian Monte Carlo method is applied to estimate the posterior distribution of all variables in order to assess uncertainties in source characteristics. The reliability and limitations of the location method are tested by systematic relocation of earthquakes across the contiguous US.

  14. A 2D driven 3D vessel segmentation algorithm for 3D digital subtraction angiography data.

    PubMed

    Spiegel, M; Redel, T; Struffert, T; Hornegger, J; Doerfler, A

    2011-10-01

    Cerebrovascular disease is among the leading causes of death in western industrial nations. 3D rotational angiography delivers indispensable information on vessel morphology and pathology. Physicians make use of this to analyze vessel geometry in detail, i.e. vessel diameters, location and size of aneurysms, to come up with a clinical decision. 3D segmentation is a crucial step in this pipeline. Although a lot of different methods are available nowadays, all of them lack a method to validate the results for the individual patient. Therefore, we propose a novel 2D digital subtraction angiography (DSA)-driven 3D vessel segmentation and validation framework. 2D DSA projections are clinically considered as gold standard when it comes to measurements of vessel diameter or the neck size of aneurysms. An ellipsoid vessel model is applied to deliver the initial 3D segmentation. To assess the accuracy of the 3D vessel segmentation, its forward projections are iteratively overlaid with the corresponding 2D DSA projections. Local vessel discrepancies are modeled by a global 2D/3D optimization function to adjust the 3D vessel segmentation toward the 2D vessel contours. Our framework has been evaluated on phantom data as well as on ten patient datasets. Three 2D DSA projections from varying viewing angles have been used for each dataset. The novel 2D driven 3D vessel segmentation approach shows superior results against state-of-the-art segmentations like region growing, i.e. an improvement of 7.2% points in precision and 5.8% points for the Dice coefficient. This method opens up future clinical applications requiring the greatest vessel accuracy, e.g. computational fluid dynamic modeling. PMID:21908904

  15. A 2D driven 3D vessel segmentation algorithm for 3D digital subtraction angiography data

    NASA Astrophysics Data System (ADS)

    Spiegel, M.; Redel, T.; Struffert, T.; Hornegger, J.; Doerfler, A.

    2011-10-01

    Cerebrovascular disease is among the leading causes of death in western industrial nations. 3D rotational angiography delivers indispensable information on vessel morphology and pathology. Physicians make use of this to analyze vessel geometry in detail, i.e. vessel diameters, location and size of aneurysms, to come up with a clinical decision. 3D segmentation is a crucial step in this pipeline. Although a lot of different methods are available nowadays, all of them lack a method to validate the results for the individual patient. Therefore, we propose a novel 2D digital subtraction angiography (DSA)-driven 3D vessel segmentation and validation framework. 2D DSA projections are clinically considered as gold standard when it comes to measurements of vessel diameter or the neck size of aneurysms. An ellipsoid vessel model is applied to deliver the initial 3D segmentation. To assess the accuracy of the 3D vessel segmentation, its forward projections are iteratively overlaid with the corresponding 2D DSA projections. Local vessel discrepancies are modeled by a global 2D/3D optimization function to adjust the 3D vessel segmentation toward the 2D vessel contours. Our framework has been evaluated on phantom data as well as on ten patient datasets. Three 2D DSA projections from varying viewing angles have been used for each dataset. The novel 2D driven 3D vessel segmentation approach shows superior results against state-of-the-art segmentations like region growing, i.e. an improvement of 7.2% points in precision and 5.8% points for the Dice coefficient. This method opens up future clinical applications requiring the greatest vessel accuracy, e.g. computational fluid dynamic modeling.

  16. Molecular dynamics studies on 3D structures of the hydrophobic region PrP(109-136).

    PubMed

    Zhang, Jiapu; Zhang, Yuanli

    2013-06-01

    Prion diseases, traditionally referred to as transmissible spongiform encephalopathies, are invariably fatal and highly infectious neurodegenerative diseases that affect a wide variety of mammalian species, manifesting as scrapie in sheep, bovine spongiform encephalopathy (or 'mad-cow' disease) in cattle, and Creutzfeldt-Jakob disease, Gerstmann-Strussler-Scheinker syndrome, fatal familial insomnia (FFI), and Kulu in humans, etc. These neurodegenerative diseases are caused by the conversion from a soluble normal cellular prion protein (PrP(C)) into insoluble abnormally folded infectious prions (PrP(Sc)). The hydrophobic region PrP(109-136) controls the formation of diseased prions: the normal PrP(113-120) AGAAAAGA palindrome is an inhibitor/blocker of prion diseases and the highly conserved glycine-xxx-glycine motif PrP(119-131) can inhibit the formation of infectious prion proteins in cells. This article gives detailed reviews on the PrP(109-136) region and presents the studies of its three-dimensional structures and structural dynamics. PMID:23563221

  17. Regional seismic wavefield computation on a 3-D heterogeneous Earth model by means of coupled traveling wave synthesis

    USGS Publications Warehouse

    Pollitz, F.F.

    2002-01-01

    I present a new algorithm for calculating seismic wave propagation through a three-dimensional heterogeneous medium using the framework of mode coupling theory originally developed to perform very low frequency (f < ???0.01-0.05 Hz) seismic wavefield computation. It is a Greens function approach for multiple scattering within a defined volume and employs a truncated traveling wave basis set using the locked mode approximation. Interactions between incident and scattered wavefields are prescribed by mode coupling theory and account for the coupling among surface waves, body waves, and evanescent waves. The described algorithm is, in principle, applicable to global and regional wave propagation problems, but I focus on higher frequency (typically f ??????0.25 Hz) applications at regional and local distances where the locked mode approximation is best utilized and which involve wavefields strongly shaped by propagation through a highly heterogeneous crust. Synthetic examples are shown for P-SV-wave propagation through a semi-ellipsoidal basin and SH-wave propagation through a fault zone.

  18. Waveform Modeling of 3D Structure of D" Region Using A Coupled SEM/Normal Mode Approach

    NASA Astrophysics Data System (ADS)

    To, A.; Gung, Y.; Capadeville, Y.; Romanowicz, B.

    2003-12-01

    The presence of strong lateral heterogeneity in D" is now well documented and presents challenges for seismic modeling. The main challenges are the limited global sampling of D" and the theoretical limits of validity of the present modeling tools, such as standard ray theory and mode approaches. We use coupled normal mode/Spectral Element Method (SEM) to compute synthetic seismograms of Sdiff in the D" part of a tomographic model(SAW24b16, Mégnin and Romanowicz, 2000) down to corner frequency 1/12s. SEM allows to take into account strong heterogeneity in a rigorous manner. The coupled method is much faster than standard SEM, when the numerical part of the computation is restricted to the D" region. In the rest of the mantle, the wave field is computed using efficient normal mode summation. As a first step, we consider a radially symmetric model outside of the D" region, and compare Sdiff synthetics with observed waveforms for a collection of deep earthquakes, for which the effect of strong heterogeneity in the crust and upper mantle is avoided. Observed and synthetic travel time trends are very consistent and in many cases the observed residuals are significantly larger. This indicates that the tomographic model only represents the smooth features of the real structure. Observed waveform amplitudes and SEM synthetics are somewhat less consistent. We compare the predictions for 800 Sdiff phases using SEM with those obtained by more approximate methods : ray theory and NACT (Non-linear asymptotic coupling theory, a normal mode perturbation approach). We discuss systematic trends in the travel times predicted by the different methods, compared to observations. Starting with the tomographic model, and correcting for mantle structure outside of D" using approximate NACT predictions, we next invert for perturbations to the tomographic model, using the coupled SEM/mode computation for the forward part of the modeling, in several regions of D" under the Pacific, which are

  19. Implementation of wireless 3D stereo image capture system and synthesizing the depth of region of interest

    NASA Astrophysics Data System (ADS)

    Ham, Woonchul; Song, Chulgyu; Kwon, Hyeokjae; Badarch, Luubaatar

    2014-05-01

    In this paper, we introduce the mobile embedded system implemented for capturing stereo image based on two CMOS camera module. We use WinCE as an operating system and capture the stereo image by using device driver for CMOS camera interface and Direct Draw API functions. We send the raw captured image data to the host computer by using WiFi wireless communication and then use GPU hardware and CUDA programming for implementation of real time three-dimensional stereo image by synthesizing the depth of ROI(region of interest). We also try to find and declare the mechanism of deblurring of CMOS camera module based on the Kirchhoff diffraction formula and propose a deblurring model. Synthesized stereo image is real time monitored on the shutter glass type three-dimensional LCD monitor and disparity values of each segment are analyzed to prove the validness of emphasizing effect of ROI.

  20. A Coupled fcGCM-GCE Modeling System: A 3D Cloud Resolving Model and a Regional Scale Model

    NASA Technical Reports Server (NTRS)

    Tao, Wei-Kuo

    2005-01-01

    Recent GEWEX Cloud System Study (GCSS) model comparison projects have indicated that cloud-resolving models (CRMs) agree with observations better than traditional single-column models in simulating various types of clouds and cloud systems from different geographic locations. Current and future NASA satellite programs can provide cloud, precipitation, aerosol and other data at very fine spatial and temporal scales. It requires a coupled global circulation model (GCM) and cloud-scale model (termed a super-parameterization or multi-scale modeling framework, MMF) to use these satellite data to improve the understanding of the physical processes that are responsible for the variation in global and regional climate and hydrological systems. The use of a GCM will enable global coverage, and the use of a CRM will allow for better and ore sophisticated physical parameterization. NASA satellite and field campaign cloud related datasets can provide initial conditions as well as validation for both the MMF and CRMs. The Goddard MMF is based on the 2D Goddard Cumulus Ensemble (GCE) model and the Goddard finite volume general circulation model (fvGCM), and it has started production runs with two years results (1998 and 1999). Also, at Goddard, we have implemented several Goddard microphysical schemes (21CE, several 31CE), Goddard radiation (including explicity calculated cloud optical properties), and Goddard Land Information (LIS, that includes the CLM and NOAH land surface models) into a next generation regional scale model, WRF. In this talk, I will present: (1) A Brief review on GCE model and its applications on precipitation processes (microphysical and land processes), (2) The Goddard MMF and the major difference between two existing MMFs (CSU MMF and Goddard MMF), and preliminary results (the comparison with traditional GCMs), (3) A discussion on the Goddard WRF version (its developments and applications), and (4) The characteristics of the four-dimensional cloud data

  1. Quantification of regional fractional ventilation in human subjects by measurement of hyperpolarized 3He washout with 2D and 3D MRI.

    PubMed

    Horn, Felix C; Deppe, Martin H; Marshall, Helen; Parra-Robles, Juan; Wild, Jim M

    2014-01-15

    Multiple-breath washout hyperpolarized (3)He MRI was used to calculate regional parametric images of fractional ventilation (r) as the ratio of fresh gas entering a volume unit to the total end inspiratory volume of the unit. Using a single dose of inhaled hyperpolarized gas and a total acquisition time of under 1 min, gas washout was measured by dynamic acquisitions during successive breaths with a fixed delay. A two-dimensional (2D) imaging protocol was investigated in four healthy subjects in the supine position, and in a second protocol the capability of extending the washout imaging to a three-dimensional (3D) acquisition covering the whole lungs was tested. During both protocols, subjects were breathing comfortably, only restricted by synchronization of breathing to the sequence timings. The 3D protocol was also successfully tested on one patient with cystic fibrosis. Mean r values from each volunteer were compared with global gas volume turnover, as calculated from flow measurement at the mouth divided by total lung volume (from MRI images), and a significant correlation (r = 0.74, P < 0.05) was found. The effects of gravity on R were investigated, and an average decrease in r of 5.5%/cm (Δr = 0.016 ± 0.006 cm(-1)) from posterior to anterior was found in the right lung. Intersubject reproducibility of r imaging with the 2D and 3D protocol was tested, and a significant correlation between repeated experiments was found in a pixel-by-pixel comparison. The proposed methods can be used to measure r on a regional basis. PMID:24311749

  2. Development of a hybrid 3-D hydrological model to simulate hillslopes and the regional unconfined aquifer system in Earth system models

    NASA Astrophysics Data System (ADS)

    Hazenberg, P.; Broxton, P. D.; Brunke, M.; Gochis, D.; Niu, G. Y.; Pelletier, J. D.; Troch, P. A. A.; Zeng, X.

    2015-12-01

    The terrestrial hydrological system, including surface and subsurface water, is an essential component of the Earth's climate system. Over the past few decades, land surface modelers have built one-dimensional (1D) models resolving the vertical flow of water through the soil column for use in Earth system models (ESMs). These models generally have a relatively coarse model grid size (~25-100 km) and only account for sub-grid lateral hydrological variations using simple parameterization schemes. At the same time, hydrologists have developed detailed high-resolution (~0.1-10 km grid size) three dimensional (3D) models and showed the importance of accounting for the vertical and lateral redistribution of surface and subsurface water on soil moisture, the surface energy balance and ecosystem dynamics on these smaller scales. However, computational constraints have limited the implementation of the high-resolution models for continental and global scale applications. The current work presents a hybrid-3D hydrological approach is presented, where the 1D vertical soil column model (available in many ESMs) is coupled with a high-resolution lateral flow model (h2D) to simulate subsurface flow and overland flow. H2D accounts for both local-scale hillslope and regional-scale unconfined aquifer responses (i.e. riparian zone and wetlands). This approach was shown to give comparable results as those obtained by an explicit 3D Richards model for the subsurface, but improves runtime efficiency considerably. The h3D approach is implemented for the Delaware river basin, where Noah-MP land surface model (LSM) is used to calculated vertical energy and water exchanges with the atmosphere using a 10km grid resolution. Noah-MP was coupled within the WRF-Hydro infrastructure with the lateral 1km grid resolution h2D model, for which the average depth-to-bedrock, hillslope width function and soil parameters were estimated from digital datasets. The ability of this h3D approach to simulate

  3. Europeana and 3D

    NASA Astrophysics Data System (ADS)

    Pletinckx, D.

    2011-09-01

    The current 3D hype creates a lot of interest in 3D. People go to 3D movies, but are we ready to use 3D in our homes, in our offices, in our communication? Are we ready to deliver real 3D to a general public and use interactive 3D in a meaningful way to enjoy, learn, communicate? The CARARE project is realising this for the moment in the domain of monuments and archaeology, so that real 3D of archaeological sites and European monuments will be available to the general public by 2012. There are several aspects to this endeavour. First of all is the technical aspect of flawlessly delivering 3D content over all platforms and operating systems, without installing software. We have currently a working solution in PDF, but HTML5 will probably be the future. Secondly, there is still little knowledge on how to create 3D learning objects, 3D tourist information or 3D scholarly communication. We are still in a prototype phase when it comes to integrate 3D objects in physical or virtual museums. Nevertheless, Europeana has a tremendous potential as a multi-facetted virtual museum. Finally, 3D has a large potential to act as a hub of information, linking to related 2D imagery, texts, video, sound. We describe how to create such rich, explorable 3D objects that can be used intuitively by the generic Europeana user and what metadata is needed to support the semantic linking.

  4. 3D crustal structure and long-period ground motions from a M9.0 megathrust earthquake in the Pacific Northwest region

    NASA Astrophysics Data System (ADS)

    Olsen, Kim B.; Stephenson, William J.; Geisselmeyer, Andreas

    2008-04-01

    We have developed a community velocity model for the Pacific Northwest region from northern California to southern Canada and carried out the first 3D simulation of a Mw 9.0 megathrust earthquake rupturing along the Cascadia subduction zone using a parallel supercomputer. A long-period (<0.5 Hz) source model was designed by mapping the inversion results for the December 26, 2004 Sumatra-Andaman earthquake (Han et al., Science 313(5787):658-662, 2006) onto the Cascadia subduction zone. Representative peak ground velocities for the metropolitan centers of the region include 42 cm/s in the Seattle area and 8-20 cm/s in the Tacoma, Olympia, Vancouver, and Portland areas. Combined with an extended duration of the shaking up to 5 min, these long-period ground motions may inflict significant damage on the built environment, in particular on the highrises in downtown Seattle.

  5. 3D crustal structure and long-period ground motions from a M9.0 megathrust earthquake in the Pacific Northwest region

    USGS Publications Warehouse

    Olsen, K.B.; Stephenson, W.J.; Geisselmeyer, A.

    2008-01-01

    We have developed a community velocity model for the Pacific Northwest region from northern California to southern Canada and carried out the first 3D simulation of a Mw 9.0 megathrust earthquake rupturing along the Cascadia subduction zone using a parallel supercomputer. A long-period (<0.5 Hz) source model was designed by mapping the inversion results for the December 26, 2004 Sumatra–Andaman earthquake (Han et al., Science 313(5787):658–662, 2006) onto the Cascadia subduction zone. Representative peak ground velocities for the metropolitan centers of the region include 42 cm/s in the Seattle area and 8–20 cm/s in the Tacoma, Olympia, Vancouver, and Portland areas. Combined with an extended duration of the shaking up to 5 min, these long-period ground motions may inflict significant damage on the built environment, in particular on the highrises in downtown Seattle.

  6. 3D Groundwater Flow Model in the Arid Region of Tafilalet Oasis System (South East of Morocco)

    NASA Astrophysics Data System (ADS)

    Bouaamlat, I.; Larabi, A.; Faouzi, M.

    2013-05-01

    The plain of Tafilalet contains an important oasis located in the Southeast of Morocco in a pre-Saharan area, characterized by an arid climate with a large deficit water budget. It has a behavior of a large depression resulting from erosion of a set of geological coverage during the Quaternary period. It also forms a small Mesopotamia crossed by two main rivers from the mountains of the High Atlas: Ziz and Rheris. The oasis of Tafilalet is an area of old traditions irrigation where agriculture is the main activity of the region that represents approximately 37% of the total area (637 km2). In this study, a three-dimensional model of groundwater flow was developed for the aquifer system of Tafilalet, to assist the decision makers as a "management tool" in order to assess alternative schemes for development and exploitation of groundwater resources in the Tafilalet plain, using Modflow2000 code. It is the first mathematical model performed for this oasis plain, taking into account the most possible real hydrogeological conditions and using the geographical information system (GIS) for the organisation and treatment of data and applying a multidisciplinary approach combining geostatistical and hydrogeological modeling. The conceptual model, in terms of hydrogeological modeling was therefore considered as a monolayer model and the aquifer system is mainly heterogeneous with lateral different hydraulic conductivities, which are ranging from 3.10-7 to 5.10-2 m/s, but most of them are located between 2.10-4 and 8.10-3 m/s. The results of the model calibration under steady state (1960) and transient state conditions, starting from this time, show reasonable agreement between observed and simulated water levels for the observation wells. After calibration, the model contributed to better groundwater characterization, the hydrodynamic parameters obtained from the model are much representative of reality. As a management tool, this model can help the manager to take

  7. Projections of Suitable Wine Growing Regions and Varieties: Adaptation in Space or Place?

    NASA Astrophysics Data System (ADS)

    Forrestel, E. J.; Cook, B.; Garcia de Cortazar-Atauri, I.; Nicholas, K. A.; Parker, A.; van Leeuwen, C.; Wolkovich, E. M.

    2015-12-01

    Winegrapes (Vitis vinifera L) are the most valuable horticultural crop in the world with nearly eight million hectares of vineyards in cultivation. Different varieties of winegrapes (e.g., Grenache or Syrah) exhibit an unprecedented amount of phenological and genetic diversity for a cultivated species, which is an important resource to buffer against climate change. Matching phenological strategies of the different winegrape varieties to a particular climate is a fundamental aim for every vineyard manager, especially in the face of significant climatic shifts in many winegrape growing regions. Yet current projections of suitable winegrape growing regions based on future climate scenarios are limited in their utility, as they do not consider the possibility that other varieties better suited to a future climate could be planted within an existing region. For our projections, we built phenological models for the nine most-planted winegrapes globally, which constitutes over 40% of all planted hectares, using a global dataset of budburst, flowering, veraison and maturity. These models were then used to characterize the growing range of 1300 globally planted winegrape varieties. Combing these models with climate projection models under RCP 4.5 and 8.5 emission scenarios we examined future distributions of suitable wine growing regions, as well as the turnover of suitable varieties within existing regions. In some regions of the world, predicted climate change will not significantly alter the varieties that are able to grow, while in others there will need to be shifts in the region itself or in the varieties that are currently planted. Some regions will also see a significant increase in the number and diversity of varieties that can be grown. Our results suggest the need to utilize the full range of winegrape diversity available when considering adaptive strategies in response to changing climates.

  8. Using Landsat digital data to detect moisture stress in corn-soybean growing regions

    NASA Technical Reports Server (NTRS)

    Thompson, D. R.; Wehmanen, O. A.

    1980-01-01

    As a part of a follow-on study to the moisture stress detection effort conducted in the Large Area Crop Inventory Experiment (LACIE), a technique utilizing transformed Landsat digital data was evaluated for detecting moisture stress in humid growing regions using sample segments from Iowa, Illinois, and Indiana. At known growth stages of corn and soybeans, segments were classified as undergoing moisture stress or not undergoing stress. The remote-sensing-based information was compared to a weekly ground-based index (Crop Moisture Index). This comparison demonstrated that the remote sensing technique could be used to monitor the growing conditions within a region where corn and soybeans are the major crop.

  9. Relocation of the Waldkirch seismic event, December 5, 2004, with regional 1D- and 3D-velocity models in the presence of upper mantle anisotropy

    NASA Astrophysics Data System (ADS)

    Muench, Thomas; Koch, Manfred; Schlittenhard, Jörg

    2010-05-01

    On December 5, 2004 a strong earthquake occurred near the city of Waldkirch, about 30 km's north of Freiburg, with a local magnitude of ML = 5.4. This seismic event was one of the strongest observed since the ML = 5.7 'Schwäbische Alb' event of September 3, 1978, 30 years before. In the aftermath of the event several institutions (Bens, BGR, LGBR, LED, SED and NEIC) have attempted to relocate this earthquake that came up with a hypocentral depth range of 9 - 12 km which. In fact, as the exact hypocentral location of the Waldkirch - and other events in the area - namely, the seismic depths, are of utmost importance for the further understanding of the seismotectonics as well as of the seismic hazard in the upper Rhinegraben area, one cannot over stress the necessity for a hypocenter relocation as best as possible. This requires a careful analysis of all factors that may impede an unbiased relocation of such an event. In the present talk we put forward the question whether the Waldkirch seismic event can be relocated with sufficient accuracy by a regional network when, additionally, improved regional 1D- and 3D seismic velocity models for the crust and upper mantle that take into consideration Pn-anisotropy of the upper mantle beneath Germany are employed in the hypocentral determination process. The seismological work starts with a comprehensive analysis of the dataset available for the relocation of the event. By means of traveltime curves a reevaluation of the observed phases is done and it is shown that some of the big observed traveltime residuals are most likely the consequence of wrongly associated phases as well as of the neglect of the anisotropic Pn traveltime correction for the region. Then hypcocenter relocations are done for 1D vertically inhomogeneous and 3D laterally inhomogeneous seismic velocity models, without and with the anisotropic Pn-traveltime correction included. The effects of the - often not well-known - Moho depth and of the VP

  10. 3-D Modeling for Upper Mantle Anisotropy Beneath Idaho-Oregon (IDOR) Region Using Sks Splitting Intensity Measurements from IDOR Passive Seismic Project Dataset

    NASA Astrophysics Data System (ADS)

    Hongsresawat, S.; Panning, M. P.; Russo, R. M.; Mocanu, V. I.; Stanciu, A. C.; Bremner, P. M.; Torpey, M. E.; VanDecar, J. C.

    2014-12-01

    We used data recorded at 86 broadband seismic stations of the IDOR Passive Seismic Project to determine upper mantle anisotropy across the suture along which Blue Mountain island-arc terranes accreted to North America during Cretaceous. This suture is currently associated with the Western Idaho Shear Zone (WISZ), a narrow, highly-deformed ductile fault that was the locus of both dextral strike-slip along, and subduction beneath, the Paleozoic margin of the North American craton. We measured shear wave splitting intensity (SI), a seismic observable that is suitable for use in 3-D inversions of upper mantle seismic anisotropy, to determine these fabrics beneath the IDOR network. SI fast-polarization directions are spatially coherent across the region, and fall into three main groups: a group with fast azimuths trending ENE-WSW, observed at stations in eastern Oregon and the NW-SE-striking western Snake River Plain; a group with E-W trending fast azimuths observed at stations along the WISZ and the Idaho Batholith, which outcrops immediately east of the suture zone; and a group with ENE-WSW trending fast azimuths observed at stations situated in the Basin-and-Range extended region of southeastern Idaho. SI delay times range from 0.46 to 1.85 seconds, with a mean of 1.1 s. We also used backazimuthal variations of SI at all stations to invert for for 3-D anisotropic fabric using the finite-frequency approach called vectorial tomography (Chevrot and Monteiller, 2009). Our preliminary results are consistent with alignment of upper mantle fabrics in the extension direction as Basin-and-Range extension propagates northward into less-extended regions of Idaho and Oregon.

  11. 2D and 3D Visualizations of the Fault Areas, Initial Heights and Tsunami Simulations of Five Largest Historical Earthquakes in Mediterrenean Region.

    NASA Astrophysics Data System (ADS)

    Gürleme, Beran; Tarık Meriç, Hakan; Ulutaş, Ergin; Anunziato, Alessandro

    2016-04-01

    The aim of this study is the simulation and visualization of the initial and maximum tsunami wave heights in 2D and 3D along the Mediterranean coasts inferred from the five largest earthquakes in history in this region. The earthquakes considered in the study are 21 July 365 Crete, 8 August 1303 Crete, 3 May 1481 Rhodes, 28 December Messina and 21 May 2003 Algeria. All these earthquakes spawned tsunamis and inflicted damage in coastal regions. The study was conducted to explain which could be the potential Tsunami consequences caused by similar earthquakes occurring in the region in the future. The methodology used for the calculation of tsunami wave heights from the earthquakes includes the determination of earthquake parameters, modeling of the initial wave height, simulation of the wave propagation and calculation of the maximum wave heights near coastal areas. The parameters of the earthquakes are based on previously published fault mechanism solutions and known tectonic features of the regions. Static dislocation algorithm for the initial wave height is used from the parameters of focal mechanism solutions. The study was conducted also to understand the reliability of the previously published focal mechanism solutions for the earthquakes by using the principal stress axis in the regions. The 2D and 3D visualized models of tsunamis from the earthquakes include isometric grid representing the sea surface for the purpose of a better understanding of the initial tsunami mechanism compared to 1D visualizations. In many studies, the earthquake locations, tectonic features of the regions, initial heights and tsunami simulations are shown on maps as bird's eye in 1D visualization. However these kinds of features are related in depths and bathymetric features. For that reason, our approaches will contribute to have better understanding where the uplift- subsidence of initial heights and crests-troughs of simulated wave heights and thus provide a better insight of the

  12. 3d-3d correspondence revisited

    NASA Astrophysics Data System (ADS)

    Chung, Hee-Joong; Dimofte, Tudor; Gukov, Sergei; Sułkowski, Piotr

    2016-04-01

    In fivebrane compactifications on 3-manifolds, we point out the importance of all flat connections in the proper definition of the effective 3d {N}=2 theory. The Lagrangians of some theories with the desired properties can be constructed with the help of homological knot invariants that categorify colored Jones polynomials. Higgsing the full 3d theories constructed this way recovers theories found previously by Dimofte-Gaiotto-Gukov. We also consider the cutting and gluing of 3-manifolds along smooth boundaries and the role played by all flat connections in this operation.

  13. The terroir of vineyards - climatic variability in an Austrian wine-growing region

    NASA Astrophysics Data System (ADS)

    Gerersdorfer, T.

    2010-09-01

    The description of a terroir is a concept in viticulture that relates the sensory attributes of wine to the environmental conditions in which the grapes grow. Many factors are involved including climate, soil, cultivar, human practices and all these factors interact manifold. The study area of Carnuntum is a small wine-growing region in the eastern part of Austria. It is rich of Roman remains which play a major role in tourism and the marketing strategies of the wines as well. An interdisciplinary study on the environmental characteristics particularly with regard to growing conditions of grapes was started in this region. The study is concerned with the description of the physiogeographic properties of the region and with the investigation of the dominating viticultural functions. Grape-vines depend on climatic conditions to a high extent. Compared to other influencing factors like soil, climate plays a significant role. In the framework of this interdisciplinary project climatic variability within the Carnuntum wine-growing region is investigated. On the one hand microclimatic variations are influenced by soil type and by canopy management. On the other hand the variability is a result of the topoclimate (altitude, aspect and slope) and therefore relief is a major terroir factor. Results of microclimatic measurements and variations are presented with focus on the interpretation of the relationship between relief, structure of the vineyards and the climatic conditions within the course of a full year period.

  14. 3D and Education

    NASA Astrophysics Data System (ADS)

    Meulien Ohlmann, Odile

    2013-02-01

    Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?

  15. Regional conductivity structures of the northwestern segment of the North American Plate derived from 3-D inversion of USArray magnetotelluric data

    NASA Astrophysics Data System (ADS)

    Meqbel, N. M.; Egbert, G. D.; Kelbert, A.

    2010-12-01

    Long period (10-20,000 s) magnetotelluric (MT) data are being acquired in a series of temporary arrays deployed across the continental United States through EMScope, a component of EarthScope, a multidisciplinary decade-long project to study the structure and evolution of the North American Continent. MT deployments in 2006-2010 have so far acquired data at 237 sites on an approximately regular grid, with the same nominal spacing as the USArray broadband seismic transportable array (~70 km), covering the Northwestern US, from the Oregon-Washington coast across the Rocky Mountains, into Montana and Wyoming. Preliminary 3-D inversion results (Patro and Egbert; 2008), based on data from the 110 westernmost “Cascadia” sites collected in the first two years, revealed extensive areas of high conductivity in the lower crust beneath the Northwest Basin and Range (NBR), inferred to result from fluids (including possibly partial melt at depth) associated with magmatic underplating, and beneath the Cascade Mountains, probably due to fluids released by the subducting Juan de Fuca slab. Here we extend this study, refining and further testing the preliminary results from Cascadia, and extending the inversion domain to the East, to include all of the EarthScope data. Although site spacing is very broad, distinct regional structures are clearly evident even in simple maps of apparent resistivity, phase and induction vectors. For the 3-D inversion we are using the parallelized version of our recently developed Modular Code (ModEM), which supports Non-Linear Conjugate Gradient and several Gauss-Newton type schemes. Our initial 3-D inversion results using 212 MT sites, fitting impedances and vertical field transfer functions (together and separately) suggest several conductive and resistive structures which appear to be stable and required by the measured data. These include: - A conductive structure elongated in the N-S direction underneath the volcanic arc of the Cascadia

  16. 3D Air Quality and the Clean Air Interstate Rule: Lagrangian Sampling of CMAQ Model Results to Aid Regional Accountability Metrics

    NASA Technical Reports Server (NTRS)

    Fairlie, T. D.; Szykman, Jim; Pierce, Robert B.; Gilliland, A. B.; Engel-Cox, Jill; Weber, Stephanie; Kittaka, Chieko; Al-Saadi, Jassim A.; Scheffe, Rich; Dimmick, Fred; Tikvart, Joe

    2008-01-01

    The Clean Air Interstate Rule (CAIR) is expected to reduce transport of air pollutants (e.g. fine sulfate particles) in nonattainment areas in the Eastern United States. CAIR highlights the need for an integrated air quality observational and modeling system to understand sulfate as it moves in multiple dimensions, both spatially and temporally. Here, we demonstrate how results from an air quality model can be combined with a 3d monitoring network to provide decision makers with a tool to help quantify the impact of CAIR reductions in SO2 emissions on regional transport contributions to sulfate concentrations at surface monitors in the Baltimore, MD area, and help improve decision making for strategic implementation plans (SIPs). We sample results from the Community Multiscale Air Quality (CMAQ) model using ensemble back trajectories computed with the NASA Langley Research Center trajectory model to provide Lagrangian time series and vertical profile information, that can be compared with NASA satellite (MODIS), EPA surface, and lidar measurements. Results are used to assess the regional transport contribution to surface SO4 measurements in the Baltimore MSA, and to characterize the dominant source regions for low, medium, and high SO4 episodes.

  17. High-order Boundary Behavior and the Incorporation of Spectral Hyperviscosity in Turbulence Models on General Bounded Regions in 3-D

    NASA Astrophysics Data System (ADS)

    Avrin, Joel

    2014-11-01

    In a bounded region in 3-D the velocity field u for the Navier-Stokes system satisfies in the no-slip case the familiar condition u = 0 on the boundary. We show further that if the boundary and the forcing data satisfy reasonably general smoothness assumptions then Au = 0 on the boundary as well where A is the Stokes operator (i.e. Au is the divergence-free part of -∇2 u). We apply this result to subgrid-scale modeling by noting that in a number of computational turbulence experiments hyperviscosity has been added to the NS system as an approximation to spectral eddy viscosity, but a rigorous definition of this technique and a qualitative theory for it has been restricted to the idealized case of box regions with periodic boundary conditions imposed on each face. But under the above smoothness assumptions the fact that Au = 0 on the boundary now allows us in the no-slip case to rigorously define adding hyperviscosity to the Navier-Stokes system on otherwise general bounded regions. We can also obtain a foundational qualitative theory for this system as well as for spectral hyperviscosity, which adds hyperviscosity only to the high frequencies past a cutoff wavenumber.

  18. Using Global Plate Velocity Boundary Conditions for Embedded Regional Geodynamic Models: Application to 3-D Modeling of the Early Rifting of the South Atlantic

    NASA Astrophysics Data System (ADS)

    Taramón, Jorge M.; Morgan, Jason P.; Pérez-Gussinyé, Marta

    2016-04-01

    The treatment of far-field boundary conditions is one of the most poorly resolved issues for regional modeling of geodynamic processes. In viscous flow, the choice of far-field boundary conditions often strongly shapes the large-scale structure of a geosimulation. The mantle velocity field along the sidewalls and base of a modeling region is typically much more poorly known than the geometry of past global motions of the surface plates as constrained by global plate motion reconstructions. For regional rifting models it has become routine to apply highly simplified 'plate spreading' or 'uniform rifting' boundary conditions to a 3-D model that limits its ability to simulate the geodynamic evolution of a specific rifted margin. One way researchers are exploring the sensitivity of regional models to uncertain boundary conditions is to use a nested modeling approach in which a global model is used to determine a large-scale flow pattern that is imposed as a constraint along the boundaries of the region to be modeled. Here we explore the utility of a different approach that takes advantage of the ability of finite element models to use unstructured meshes than can embed much higher resolution sub-regions. Here we demonstrate the workflow and code tools that we created to generate this unstructured mesh: solver based on springs, guide-mesh and routines to improve the quality, e.g., closeness to a regular tetrahedron, of the tetrahedral elements of the mesh. Note that the same routines are used to generate a new mesh in the remeshing of a distorted Lagrangian mesh. In our initial project to validate this approach, we create a global spherical shell mesh in which a higher resolution sub-region is created around the nascent South Atlantic Rifting Margin. Global Plate motion BCs and plate boundaries are applied for the time of the onset of rifting, continuing through several 10s of Ma of rifting. Thermal, compositional, and melt-related buoyancy forces are only non

  19. Comparison of publically available Moho depth and crustal thickness grids with newly derived grids by 3D gravity inversion for the High Arctic region.

    NASA Astrophysics Data System (ADS)

    Lebedeva-Ivanova, Nina; Gaina, Carmen; Minakov, Alexander; Kashubin, Sergey

    2016-04-01

    We derived Moho depth and crustal thickness for the High Arctic region by 3D forward and inverse gravity modelling method in the spectral domain (Minakov et al. 2012) using lithosphere thermal gravity anomaly correction (Alvey et al., 2008); a vertical density variation for the sedimentary layer and lateral crustal variation density. Recently updated grids of bathymetry (Jakobsson et al., 2012), gravity anomaly (Gaina et al, 2011) and dynamic topography (Spasojevic & Gurnis, 2012) were used as input data for the algorithm. TeMAr sedimentary thickness grid (Petrov et al., 2013) was modified according to the most recently published seismic data, and was re-gridded and utilized as input data. Other input parameters for the algorithm were calibrated using seismic crustal scale profiles. The results are numerically compared with publically available grids of the Moho depth and crustal thickness for the High Arctic region (CRUST 1 and GEMMA global grids; the deep Arctic Ocean grids by Glebovsky et al., 2013) and seismic crustal scale profiles. The global grids provide coarser resolution of 0.5-1.0 geographic degrees and not focused on the High Arctic region. Our grids better capture all main features of the region and show smaller error in relation to the seismic crustal profiles compare to CRUST 1 and GEMMA grids. Results of 3D gravity modelling by Glebovsky et al. (2013) with separated geostructures approach show also good fit with seismic profiles; however these grids cover the deep part of the Arctic Ocean only. Alvey A, Gaina C, Kusznir NJ, Torsvik TH (2008). Integrated crustal thickness mapping and plate recon-structions for the high Arctic. Earth Planet Sci Lett 274:310-321. Gaina C, Werner SC, Saltus R, Maus S (2011). Circum-Arctic mapping project: new magnetic and gravity anomaly maps of the Arctic. Geol Soc Lond Mem 35, 39-48. Glebovsky V.Yu., Astafurova E.G., Chernykh A.A., Korneva M.A., Kaminsky V.D., Poselov V.A. (2013). Thickness of the Earth's crust in the

  20. Study of the 3D Coronal Magnetic Field of Active Region 11117 Around the Time of a Confined Flare Using a Data-Driven CESE-MHD Model

    NASA Astrophysics Data System (ADS)

    Jiang, C.; Feng, X.; Wu, S.; Hu, Q.

    2012-12-01

    Non-potentiality of the solar coronal magnetic field accounts for the solar explosion like flares and CMEs. We apply a data-driven CESE-MHD model to investigate the three-dimensional (3D) coronal magnetic field of NOAA active region (AR) 11117 around the time of a C-class confined flare occurred on 2010 October 25. The CESE-MHD model, based on the spacetime conservation-element and solution-element scheme, is designed to focus on the magnetic-field evolution and to consider a simplified solar atomsphere with finite plasma β. Magnetic vector-field data derived from the observations at the photoshpere is inputted directly to constrain the model. Assuming that the dynamic evolution of the coronal magnetic field can be approximated by successive equilibria, we solve a time sequence of MHD equilibria basing on a set of vector magnetograms for AR 11117 taken by the Helioseismic and Magnetic Imager (HMI) on board the Solar Dynamic Observatory (SDO) around the time of flare. The model qualitatively reproduces the basic structures of the 3D magnetic field, as supported by the visual similarity between the field lines and the coronal loops observed by the Atmospheric Imaging Assembly (AIA), which shows that the coronal field can indeed be well characterized by the MHD equilibrium in most time. The magnetic configuration changes very limited during the studied time interval of two hours. A topological analysis reveals that the small flare is correlated with a bald patch (BP, where the magnetic field is tangent to the photoshpere), suggesting that the energy release of the flare can be understood by magnetic reconnection associated with the BP separatrices. The total magnetic flux and energy keep increasing slightly in spite of the flare, while the magnetic free energy drops during the flare with an amount of 1.7 × 1030 erg, which can be interpreted as the energy budget released by the minor C-class flare.

  1. Detection of subjects and brain regions related to Alzheimer's disease using 3D MRI scans based on eigenbrain and machine learning

    PubMed Central

    Zhang, Yudong; Dong, Zhengchao; Phillips, Preetha; Wang, Shuihua; Ji, Genlin; Yang, Jiquan; Yuan, Ti-Fei

    2015-01-01

    Purpose: Early diagnosis or detection of Alzheimer's disease (AD) from the normal elder control (NC) is very important. However, the computer-aided diagnosis (CAD) was not widely used, and the classification performance did not reach the standard of practical use. We proposed a novel CAD system for MR brain images based on eigenbrains and machine learning with two goals: accurate detection of both AD subjects and AD-related brain regions. Method: First, we used maximum inter-class variance (ICV) to select key slices from 3D volumetric data. Second, we generated an eigenbrain set for each subject. Third, the most important eigenbrain (MIE) was obtained by Welch's t-test (WTT). Finally, kernel support-vector-machines with different kernels that were trained by particle swarm optimization, were used to make an accurate prediction of AD subjects. Coefficients of MIE with values higher than 0.98 quantile were highlighted to obtain the discriminant regions that distinguish AD from NC. Results: The experiments showed that the proposed method can predict AD subjects with a competitive performance with existing methods, especially the accuracy of the polynomial kernel (92.36 ± 0.94) was better than the linear kernel of 91.47 ± 1.02 and the radial basis function (RBF) kernel of 86.71 ± 1.93. The proposed eigenbrain-based CAD system detected 30 AD-related brain regions (Anterior Cingulate, Caudate Nucleus, Cerebellum, Cingulate Gyrus, Claustrum, Inferior Frontal Gyrus, Inferior Parietal Lobule, Insula, Lateral Ventricle, Lentiform Nucleus, Lingual Gyrus, Medial Frontal Gyrus, Middle Frontal Gyrus, Middle Occipital Gyrus, Middle Temporal Gyrus, Paracentral Lobule, Parahippocampal Gyrus, Postcentral Gyrus, Posterial Cingulate, Precentral Gyrus, Precuneus, Subcallosal Gyrus, Sub-Gyral, Superior Frontal Gyrus, Superior Parietal Lobule, Superior Temporal Gyrus, Supramarginal Gyrus, Thalamus, Transverse Temporal Gyrus, and Uncus). The results were coherent with existing

  2. Intravenous drug abuse and tricuspid valve endocarditis: Growing trends in the Middle East Gulf region.

    PubMed

    Panduranga, Prashanth; Al-Abri, Seif; Al-Lawati, Jawad

    2013-11-26

    Traditionally, tricuspid valve endocarditis is uncommon in the Middle East region. However, recent global data indicate growing trends in the use of illicit drug abuse, specifically injectable heroin, in the Middle East Gulf region. The presence of many transit port services in the Middle East Gulf States has led to smuggling of substance abuse drugs in the region. The Middle East Gulf States, currently a transit market, are also becoming a growing consumer market in view of the increased substance abuse in the youth. However, there is a paucity of data with respect to the prevalence or incidence of tricuspid valve endocarditis in the region, probably due to underdiagnosis or underreporting. A high index of suspicion of tricuspid valve endocarditis is essential in patients with a history of intravenous drug abuse. This article reviews the epidemiology of illicit drug abuse in the Middle East Gulf region, as well as the diagnosis and treatment of tricuspid valve endocarditis, and calls for all physicians in the region to be vigilant while dealing with intravenous drug abuse. PMID:24829628

  3. Simultaneous inversion for 3D crustal and lithospheric structure and regional hypocenters beneath Germany in the presence of an anisotropic upper mantle

    NASA Astrophysics Data System (ADS)

    Koch, M.; Muench, T.

    2010-12-01

    There is now ample evidence from both refraction seismic studies and from more recent local earthquake travel-time analysis of some of the authors that large sections of the upper mantle underneath Europe and Germany, in particular, are anisotropic. Employing a modified version of the method of simultaneous inversion for structure and hypocenters (SSH) of the first author, including a priori known upper mantle anisotropy, a full 3D SSH-inversion underneath Germany is carried out. Regional travel times from local events occurring between 1975 - 2003 are used which, after application of several selection criteria, results in ~1300 events with a total of ~30000 P- and S-phases for the SSH inversion. The SSH procedure is carried out in several incremental steps. First of all improved 1D seismic velocity models are derived assuming an isotropic as well as an anisotropic upper mantle. In addition of a slightly better model fit for the anisotropic than for the isotropic model, the latter gives also a somewhat lower Pn-velocity of ~7.90 km/s, compared with ~8.0 km/s for the former. This indicates that inclusion of upper mantle anisotropy into the SSH model is required to obtain physically reasonable Pn-velocities. The results for the P-velocity in the lower crust are less clear, because of some trade-off with the upper mantle layer. Increasingly refined 3D seismic models are then computed, starting with a lateral discretization into 15 x 15 blocs (=40 x 40 km per bloc) and finally going up to 35 × 35 blocs, (=16 x 16 km). For each of the models, inversion solutions for the isotropic, as well as the anisotropic case are examined. The quality of the solution is estimated by means of various tests for resolution, covariance and other trade-off characteristics of the data- and the model-space. Significant improvements for both the isotropic and anisotropic upper mantle cases are obtained for full 3D SSH inversion models. Similar to the 1D Pn-velocity models there are

  4. New large-scale lithospheric model of the Western Carpathian-Pannonian Basin region based on the 3-D gravity modelling.

    NASA Astrophysics Data System (ADS)

    Alasonati Tasarova, Zuzana; Bielik, Miroslav; Götze, Hans-Jürgen; Afonso, Jaun Carlos; Fullea, Javier

    2010-05-01

    A 3-D forward modelling of the Bouguer gravity field was performed for the Western Carpathian-Pannonian Basin region. The gravity model extends to depth of 220 km and includes also the surrounding units (the Eastern Alps, Bohemian Massif, Trans-European Suture Zone and East European Craton). It is constrained by seismic models, mainly from the CELEBRATION 2000 seismic experiment, and other geophysical data. Additionally, the density distribution and thermal structure in the shallow upper mantle were estimated using a combination of petrological, geophysical, and mineral physics information (LitMod). This approach is necessary in order to better constrain the more complicated structure of the Pannonian Basin. As a result, we present the first 3-D gravity model of the region that combines various geophysical datasets and is consistent with petrological data. Realistic density values within the uppermost mantle provide a better control on the regional gravity signal. In turn, this generates a model with refined and enhanced crustal structure. This means that deeper parts of the model are better accounted for, which helps to better constrain the nature of shallower crustal layers. Although not commonly applied in potential field modelling, we find that this approach is advantageous when modelling large areas with insufficient near-surface constraints. Also, a density distribution within the crust and uppermost mantle that is consistent with petrological data allows better estimates of the depth to the Moho (where it is not constrained by seismic data) and to the lithosphere-asthenosphere boundary. Hence, our model provides improved estimates of both the density distribution within the crust and uppermost mantle and the depth to major density discontinuities (sediments, Moho, lithosphere-asthenosphere boundary). The results of the modelling reveal a markedly different nature of the Western Carpathian-Pannonian region (ALACAPA and Tisza-Dacia microplates) from the

  5. 3D Imaging.

    ERIC Educational Resources Information Center

    Hastings, S. K.

    2002-01-01

    Discusses 3 D imaging as it relates to digital representations in virtual library collections. Highlights include X-ray computed tomography (X-ray CT); the National Science Foundation (NSF) Digital Library Initiatives; output peripherals; image retrieval systems, including metadata; and applications of 3 D imaging for libraries and museums. (LRW)

  6. The Climatology of Climate Extremes in the World's Major Growing Regions

    NASA Astrophysics Data System (ADS)

    Troy, T.; Zhu, X.

    2015-12-01

    A stable food supply is increasingly important as global populations grow and climate variability and extremes affect crop yields. It is therefore critical to quantify the occurrence of extremes in major growing regions globally to understand the vulnerability of the global food supply to climate. First, we grid the GHCN historical climate data and evaluate the effect of gridding on estimation of agriculturally relevant climate extremes, such as heat waves, consecutive dry days, and precipitation intensity. We find that the differences between gridded indices and the raw station indices are small, mostly less than 10%. We then evaluate the climatology of climate extremes and the probability of concurrent extremes, both within one growing region and across multiple regions globally. We find that the correlation of two precipitation or temperature related indices are quite strong, such that the probability of another extreme occurring increases given the occurrence of one extreme. These results provide estimations of the global food supply's vulnerability to climate variability and extremes, which is critical for planning in the coming decades with projections of more frequent and more intense climate extremes.

  7. Influence of Asian outflow on Rishiri Island, northernmost Japan: Application of radon as a tracer for characterizing fetch regions and evaluating a global 3D model

    NASA Astrophysics Data System (ADS)

    Zhu, Chunmao; Yoshikawa-Inoue, Hisayuki; Matsueda, Hidekadzu; Sawa, Yosuke; Niwa, Yosuke; Wada, Akira; Tanimoto, Hiroshi

    2012-04-01

    Atmospheric 222Rn was monitored from December 2008 to November 2010 on Rishiri Island (45°07‧N, 141°12‧E), northernmost Japan. Seasonal 222Rn variation was characterized by high concentrations from November to February and low concentrations from May to July, caused by the alternation of continental and maritime fetch regions. 222Rn tracer and back trajectory cluster analyses indicated that the predominant continental fetch region was southeastern Siberia and northeastern China. 222Rn emitted from China and South Korea, whose economies are growing rapidly, did not significantly affect the Rishiri site. The major maritime fetch region was the Sea of Okhotsk and the Bering Sea. A global three-dimensional model (NICAM-TM) accurately simulated 222Rn concentrations on Rishiri Island and in the seasonal fetch regions. The time series of 222Rn data will make it possible to evaluate the sources and sinks of atmospheric greenhouse gases being monitored at Rishiri Island, which complements other sites in the Asia-Pacific rim region, and to validate model simulations used to examine trans-boundary air pollution.

  8. Infrared and visible image fusion based on region growing and contourlet transform

    NASA Astrophysics Data System (ADS)

    Zhao, Bingjie; Gao, Wei; Song, Zongxi

    2013-09-01

    According to the characteristics of infrared and visible images, a new image fusion method based on region growing and contourlet transform is proposed in this paper. To obtain more complementary information, the method is designed as a two-stage procedure. Firstly, the input infrared image is processed with region growing to segment the thermal target. Different fusion rules are adopted in target and background regions, respectively. For the target region, local energy is utilized as the fusion rule of the first fusion to fuse the thermal target and the visible image, while for the non-target region, we reserve the visible background information. Secondly, in order to fully add original information of the source images and avoid loss of information caused by segmentation, we make the second fusion between the visible image and the result image of the one-stage fusion. For good properties of localization, directionality and anisotropy, we adopt contourlet transform as the second fusion method. Experiments are carried out and the results show that our method is clearer in visual quality and effective in quantitative evaluations and the fused images are better than those resulting of using wavelet transform and contourlet transform.

  9. Self consistent particles dynamics in/out of the cusp region by using back tracking technics; a global 3D PIC simulation approach

    NASA Astrophysics Data System (ADS)

    Esmaeili, A.; Cai, D.; Lembege, B.; Nishikawa, K.

    2013-12-01

    Large scale three dimensionbal PIC (particle in cell) simulations are presently used in order to analyze the global solar wind-terrestrial magnetosphere intreraction within a full self-consistent approach, and where both electrons and ions are treated as an assembly of individual particles. This 3D kinetic approach allows us to analyze in particular the dynamics and the fine structures of the cusp region when including self consistently not only its whole neighborhood (in the terrestrial magnetosphere) but also the impact of the solar wind and the interplanetary field (IMF) features. Herein, we focuss our attention on the cusp region and in particular on the acceleration and precipitation of particles (both ions and electrons) within the cusp. In present simulations, the IMF is chosen northward, (i.e. where the X -reconnection region is just above the cusp, in the meridian plane). Back-trackings of self-consistent particles are analyzed in details in order to determine (i) which particles (just above the cusp) are precipitated deeply into the cusp, (ii) which populations are injected from the cusp into the nearby tail, (iii) where the particles suffer the largest energisation along their self-consistent trajectories, (iv) where these populations accumulate, and (v) where the most energetic particles are originally coming from. This approach allows to make a traking of particles within the scenario "solar wind-magnetosheath- cusp -nearbytail"; moreover it strongly differs from the standard test particles technics and allows to provide informations not accessible when using full MHD approach. Keywords: Tracing Particles, Particle In Cell (PIC) simulation, double cusp, test particles method, IMF, Solar wind, Magnetosphere

  10. Best Merge Region Growing with Integrated Probabilistic Classification for Hyperspectral Imagery

    NASA Technical Reports Server (NTRS)

    Tarabalka, Yuliya; Tilton, James C.

    2011-01-01

    A new method for spectral-spatial classification of hyperspectral images is proposed. The method is based on the integration of probabilistic classification within the hierarchical best merge region growing algorithm. For this purpose, preliminary probabilistic support vector machines classification is performed. Then, hierarchical step-wise optimization algorithm is applied, by iteratively merging regions with the smallest Dissimilarity Criterion (DC). The main novelty of this method consists in defining a DC between regions as a function of region statistical and geometrical features along with classification probabilities. Experimental results are presented on a 200-band AVIRIS image of the Northwestern Indiana s vegetation area and compared with those obtained by recently proposed spectral-spatial classification techniques. The proposed method improves classification accuracies when compared to other classification approaches.

  11. Development and characterization of an anthropomorphic breast software phantom based upon region-growing algorithm

    PubMed Central

    Bakic, Predrag R.; Zhang, Cuiping; Maidment, Andrew D. A.

    2011-01-01

    Purpose: We present a novel algorithm for computer simulation of breast anatomy for generation of anthropomorphic software breast phantoms. A realistic breast simulation is necessary for preclinical validation of volumetric imaging modalities.Methods: The anthropomorphic software breast phantom simulates the skin, regions of adipose and fibroglandular tissue, and the matrix of Cooper’s ligaments and adipose compartments. The adipose compartments are simulated using a seeded region-growing algorithm; compartments are grown from a set of seed points with specific orientation and growing speed. The resulting adipose compartments vary in shape and size similar to real breasts; the adipose region has a compact coverage by adipose compartments of various sizes, while the fibroglandular region has fewer, more widely separated adipose compartments. Simulation parameters can be selected to cover the breadth of variations in breast anatomy observed clinically.Results: When simulating breasts of the same glandularity with different numbers of adipose compartments, the average compartment volume was proportional to the phantom size and inversely proportional to the number of simulated compartments. The use of the software phantom in clinical image simulation is illustrated by synthetic digital breast tomosynthesis images of the phantom. The proposed phantom design was capable of simulating breasts of different size, glandularity, and adipose compartment distribution. The region-growing approach allowed us to simulate adipose compartments with various size and shape. Qualitatively, simulated x-ray projections of the phantoms, generated using the proposed algorithm, have a more realistic appearance compared to previous versions of the phantom.Conclusions: A new algorithm for computer simulation of breast anatomy has been proposed that improved the realism of the anthropomorphic software breast phantom. PMID:21815391

  12. Axial 3D region of interest reconstruction using weighted cone beam BPF/DBPF algorithm cascaded with adequately oriented orthogonal butterfly filtering

    NASA Astrophysics Data System (ADS)

    Tang, Shaojie; Tang, Xiangyang

    2016-03-01

    Axial cone beam (CB) computed tomography (CT) reconstruction is still the most desirable in clinical applications. As the potential candidates with analytic form for the task, the back projection-filtration (BPF) and the derivative backprojection filtered (DBPF) algorithms, in which Hilbert filtering is the common algorithmic feature, are originally derived for exact helical and axial reconstruction from CB and fan beam projection data, respectively. These two algorithms have been heuristically extended for axial CB reconstruction via adoption of virtual PI-line segments. Unfortunately, however, streak artifacts are induced along the Hilbert filtering direction, since these algorithms are no longer accurate on the virtual PI-line segments. We have proposed to cascade the extended BPF/DBPF algorithm with orthogonal butterfly filtering for image reconstruction (namely axial CB-BPP/DBPF cascaded with orthogonal butterfly filtering), in which the orientation-specific artifacts caused by post-BP Hilbert transform can be eliminated, at a possible expense of losing the BPF/DBPF's capability of dealing with projection data truncation. Our preliminary results have shown that this is not the case in practice. Hence, in this work, we carry out an algorithmic analysis and experimental study to investigate the performance of the axial CB-BPP/DBPF cascaded with adequately oriented orthogonal butterfly filtering for three-dimensional (3D) reconstruction in region of interest (ROI).

  13. In Situ Investigation of the 3D Mechanical Microstructure at Nanoscale: Nano-CT Imaging Method of Local Small Region in Large Scale Sample

    PubMed Central

    Xu, Feng; Hu, Xiao-fang; Qu, Hong-yan; Kang, Dan; Xiao, Ti-qiao

    2014-01-01

    To investigate the local micro-/nanoscale region in a large scale sample, an image reconstruction method for nanometer computed tomography (nano-CT) was proposed in this paper. In the algorithm, wavelets were used to localize the filtered-backprojection (FBP) algorithm because of its space-frequency localization property. After the implementation of the algorithm, two simulation local reconstruction experiments were performed to confirm its effectiveness. Three evaluation criteria were used in the experiments to judge the quality of the reconstructed images. The experimental results showed that the algorithm proposed in this paper performed best because (1) the quality of its results had improved 20%–30% compared to the results of FBP and 10%–30% compared to the results of another wavelet algorithm; (2) the new algorithm was stable under different circumstances. Besides, an actual reconstruction experiment was performed using real projection data that had been collected in a CT experiment. Two-dimensional (2D) and three-dimensional (3D) images of the sample were reconstructed. The microstructure of the sample could be clearly observed in the reconstructed images. Since much attention has been directed towards the nano-CT technique to investigate the microstructure of materials, this new wavelet-based local tomography algorithm could be considered as a meaningful effort. PMID:24723829

  14. In situ investigation of the 3D mechanical microstructure at nanoscale: nano-CT imaging method of local small region in large scale sample.

    PubMed

    Dong, Bo; Xu, Feng; Hu, Xiao-fang; Qu, Hong-yan; Kang, Dan; Xiao, Ti-qiao

    2014-01-01

    To investigate the local micro-/nanoscale region in a large scale sample, an image reconstruction method for nanometer computed tomography (nano-CT) was proposed in this paper. In the algorithm, wavelets were used to localize the filtered-backprojection (FBP) algorithm because of its space-frequency localization property. After the implementation of the algorithm, two simulation local reconstruction experiments were performed to confirm its effectiveness. Three evaluation criteria were used in the experiments to judge the quality of the reconstructed images. The experimental results showed that the algorithm proposed in this paper performed best because (1) the quality of its results had improved 20%-30% compared to the results of FBP and 10%-30% compared to the results of another wavelet algorithm; (2) the new algorithm was stable under different circumstances. Besides, an actual reconstruction experiment was performed using real projection data that had been collected in a CT experiment. Two-dimensional (2D) and three-dimensional (3D) images of the sample were reconstructed. The microstructure of the sample could be clearly observed in the reconstructed images. Since much attention has been directed towards the nano-CT technique to investigate the microstructure of materials, this new wavelet-based local tomography algorithm could be considered as a meaningful effort. PMID:24723829

  15. Quantifying the Reduction Intensity of Handaxes with 3D Technology: A Pilot Study on Handaxes in the Danjiangkou Reservoir Region, Central China

    PubMed Central

    Li, Hao; Kuman, Kathleen; Li, Chaorong

    2015-01-01

    This paper presents an approach to analyzing the reduction intensity of handaxes with the aid of 3D scanning technology. Two quantitative reduction indices, the Scar Density Index (SDI) and the Flaked Area Index (FAI), are applied to handaxes from the third terrace of the Danjiangkou Reservoir Region (DRR), central China, dated to the Middle Pleistocene. The results show that most of the DRR handaxes in this sample show moderate reduction, which also reflects a least-effort reduction strategy and a generally short use-life for these tools. Detailed examination of the DRR handaxes by sector reveals that the tips generally show the most reduction, while the bases show the least shaping, with cortex often preserved on the base to facilitate handling. While western Acheulean assemblages in this regard are variable, there are many examples of handaxes of varying age with trimming of the bases. We also found no significant differences in the levels of reduction between the two main raw materials, quartz phyllite and trachyte. However, the type of blank used (large flakes versus cobbles) and the type of shaping (bifacial, partly bifacial and unifacial) do play a significant role in the reduction intensity of the DRR handaxes. Finally, a small number of handaxes from the younger (the early Late Pleistocene) second terrace of the DRR was compared with those from the third terrace. The results indicate that there is no technological change in the reduction intensity through time in these two DRR terraces. PMID:26331954

  16. Quantifying the Reduction Intensity of Handaxes with 3D Technology: A Pilot Study on Handaxes in the Danjiangkou Reservoir Region, Central China.

    PubMed

    Li, Hao; Kuman, Kathleen; Li, Chaorong

    2015-01-01

    This paper presents an approach to analyzing the reduction intensity of handaxes with the aid of 3D scanning technology. Two quantitative reduction indices, the Scar Density Index (SDI) and the Flaked Area Index (FAI), are applied to handaxes from the third terrace of the Danjiangkou Reservoir Region (DRR), central China, dated to the Middle Pleistocene. The results show that most of the DRR handaxes in this sample show moderate reduction, which also reflects a least-effort reduction strategy and a generally short use-life for these tools. Detailed examination of the DRR handaxes by sector reveals that the tips generally show the most reduction, while the bases show the least shaping, with cortex often preserved on the base to facilitate handling. While western Acheulean assemblages in this regard are variable, there are many examples of handaxes of varying age with trimming of the bases. We also found no significant differences in the levels of reduction between the two main raw materials, quartz phyllite and trachyte. However, the type of blank used (large flakes versus cobbles) and the type of shaping (bifacial, partly bifacial and unifacial) do play a significant role in the reduction intensity of the DRR handaxes. Finally, a small number of handaxes from the younger (the early Late Pleistocene) second terrace of the DRR was compared with those from the third terrace. The results indicate that there is no technological change in the reduction intensity through time in these two DRR terraces. PMID:26331954

  17. The interaction between deepwater channel systems and growing thrusts and folds, toe-thrust region of the deepwater Niger Delta

    NASA Astrophysics Data System (ADS)

    Jolly, Byami; Whittaker, Alex; Lonergan, Lidia

    2015-04-01

    Gravity-driven seaward-verging thrusts, landward-verging back-thrusts and associated folds often characterize the slope and deepwater settings of passive margins. These structures, found in the 'toe-thrust' region of the system, exert a significant control on sediment gravity flows because they create and determine the location and configuration of sediment depocentres and transport systems. Consequently, a quantitative understanding of the interaction between sediment gravity flows and seabed topography is required to understand these systems effectively. Here we make quantitative measurements of the geomorphic response of submarine channels to growing tectonic structures with the aim of providing new constraints on the long-term erosional dynamics of submarine channel systems. This study exploits 3D seismic data in the outer toe-thrust region of the deepwater Niger Delta to analyze the interaction between Plio-Pleistocene channel systems and actively growing folds and thrusts. We mapped folds and thrusts from the seismic data and we used this data to reconstruct the history of fold growth. We then used the sea-bed seismic horizon to build a 50 m resolution Digital Elevation Model (DEM) of the sea floor in Arc-GIS. We extracted channel long- profiles across growing structures from the DEM, and made measurements of channel geometries at regular intervals along the channel length. This information was used to infer morphodyanamic processes that sculpted the channel systems through time, and to estimate the bed shear stresses and fluid velocities of typical flow events. The bathymetric long profiles of these channels are relatively linear with concavity that range from -0.08 to -0.34, and an average gradient of ~1o. Actively growing thrusts are typically associated with a local steepening in channel gradient by a factor of up to 3, and this effect extends 0.5 - 2 km upstream of the thrust. Within these knickzones, channel incision increases by approximately by a

  18. Discontinuous region growing scheme for preliminary detection of tumor in MRCP images.

    PubMed

    Logeswaran, Rajasvaran; Eswaran, Chikkannan

    2006-08-01

    Tumors are generally difficult to detect in Magnetic Resonance (MR) images as they can be of varying intensities and do not appear as clear structures on these images. This difficulty is more prominent in MR Cholangiopancreatography (MRCP), which is the MR technology using a special sequence of T2-weighted imaging to identify the biliary tract, pancreatic duct, and gallbladder in the liver region, as MRCP images are more noisy in nature and are acquired for a more focused area with too much flexibility in position orientation for convenient computer-aided diagnosis. Based on the principle that the tumor mass manifests itself as blockage of the biliary tree structure, this paper introduces a technique that uses a region growing algorithm to identify discontinuities in the biliary tree as a means to preliminary detection of a possible tumor, in a fashion similar to the visual observation used by most radiologists in making their preliminary diagnosis. Through the use of appropriate image normalization, watershed segmentation, thresholding, rule-based region growing, and region analysis, the proposed technique is shown in this paper to be successful in identifying MRCP images with liver carcinoma from those with normal liver. Acquisition standardization, interactive image selection, and optimum image orientation will further enhance the accuracy of this proposed scheme for use in aiding clinical diagnosis at medical institutions. PMID:16978012

  19. Natural Region Carnuntum - a web map of the Carnuntum wine-growing area

    NASA Astrophysics Data System (ADS)

    Reitner, Heinz; Heinrich, Maria; Graßl, Johann; Eitzinger, Josef; Hobiger, Gerhard; Murer, Erwin; Pirkl, Herbert; Rabeder, Julia; Reischer, Johannes; Schiegl, Martin; Spiegel, Adelheid; Wimmer-Frey, Ingeborg

    2014-05-01

    Utilizing web map services and a web map application the results of a three-year study of the vineyards of Carnuntum are made easily accessible to winemakers and the general public. During the study the vineyards of Carnuntum have been investigated for their terroir characteristics and major viticulture functions. As a result, various thematic layers and geodata analyses describe the geo-environmental properties and variability of the wine growing region and delimit homogenous multilayer mapping units by using a Geographic Information System. On the basis of the study report, which combines written text and printed maps to present these results, the thematic layers and geodata analysis results have been converted to multilayer web services and an accompanying web map application. The web map gives access to grouped thematic layers which represent climate, soil, geochemistry, geology and apparent resistivity maps. Using a web map interface with on screen navigation to areas of interest and selection of layers for display in any desired combination, the study results are made available to winemakers of the region and to the general public. The web map Natural Region Carnuntum shall primarily serve as an information tool but is also intended to communicate and propose scientific research for the investigation of wine-growing regions.

  20. Nucleus and cytoplasm segmentation in microscopic images using K-means clustering and region growing

    PubMed Central

    Sarrafzadeh, Omid; Dehnavi, Alireza Mehri

    2015-01-01

    Background: Segmentation of leukocytes acts as the foundation for all automated image-based hematological disease recognition systems. Most of the time, hematologists are interested in evaluation of white blood cells only. Digital image processing techniques can help them in their analysis and diagnosis. Materials and Methods: The main objective of this paper is to detect leukocytes from a blood smear microscopic image and segment them into their two dominant elements, nucleus and cytoplasm. The segmentation is conducted using two stages of applying K-means clustering. First, the nuclei are segmented using K-means clustering. Then, a proposed method based on region growing is applied to separate the connected nuclei. Next, the nuclei are subtracted from the original image. Finally, the cytoplasm is segmented using the second stage of K-means clustering. Results: The results indicate that the proposed method is able to extract the nucleus and cytoplasm regions accurately and works well even though there is no significant contrast between the components in the image. Conclusions: In this paper, a method based on K-means clustering and region growing is proposed in order to detect leukocytes from a blood smear microscopic image and segment its components, the nucleus and the cytoplasm. As region growing step of the algorithm relies on the information of edges, it will not able to separate the connected nuclei more accurately in poor edges and it requires at least a weak edge to exist between the nuclei. The nucleus and cytoplasm segments of a leukocyte can be used for feature extraction and classification which leads to automated leukemia detection. PMID:26605213

  1. TRACE 3-D documentation

    SciTech Connect

    Crandall, K.R.

    1987-08-01

    TRACE 3-D is an interactive beam-dynamics program that calculates the envelopes of a bunched beam, including linear space-charge forces, through a user-defined transport system. TRACE 3-D provides an immediate graphics display of the envelopes and the phase-space ellipses and allows nine types of beam-matching options. This report describes the beam-dynamics calculations and gives detailed instruction for using the code. Several examples are described in detail.

  2. Radioactivity and heavy metal levels in hazelnut growing in the Eastern Black Sea Region of Turkey.

    PubMed

    Cevik, U; Celik, N; Celik, A; Damla, N; Coskuncelebi, K

    2009-09-01

    The Eastern Black Sea Region of Turkey is one of the main hazelnut producers in Turkey and in the world. Since this region was contaminated by the Chernobyl accident in 1986, a comprehensive study was planned and carried out to determine the radioactivity level in hazelnut growing region. The dose due to consumption of hazelnut by the public was estimated and it was shown that this dose imposes no threat to human health. In addition, heavy metal analysis was performed in the samples and the amount of Cr, Mn, Fe, Ni, Cu, Zn, and Pb were also detected. The results showed that the concentrations of heavy metal are below the daily intake recommended by the international organizations. PMID:19549551

  3. The Sabethines of Northern Andean Coffee-Growing Regions of Colombia.

    PubMed

    Suaza-Vasco, Juan; López-Rubio, Andrés; Galeano, Juan; Uribe, Sandra; Vélez, Iván; Porter, Charles

    2015-06-01

    Sampling for sabethine mosquitoes occurred intermittently from September 2007 to April 2013 in 17 municipalities, located in 5 departments (divisions) in the northern Andean coffee-growing regions of Colombia. Of the 9 genera within the Sabethini tribe known to occur in the Neotropical region, 6 were encountered including 15 species: Jonhbelkinia ulopus, Limatus durhamii, Sabethes ignotus, Sa. luxodens, Sa. undosus, Shannoniana fluviatilis, Trichoprosopon compressum, Tr. digitatum, Tr. evansae, Tr. pallidiventer s.l., Tr. pallidiventer s.s., Wyeomyia arthrostigma, Wy. oblita, Wy. ulocoma, and Wy. undulata. The species Sa. luxodens and Wy. undulata constitute new records for Colombia. These records broaden the knowledge of this important group that includes some important species related to the arbovirus transmission. Records are from the northern Colombian Andes, a region noted for coffee cultivation and ecotourism. PMID:26181687

  4. Region-growing technique adapted to precise microcalcification characterization in mammography

    NASA Astrophysics Data System (ADS)

    Darboux, Michel; Dinten, Jean-Marc; Nicolas, Eric

    1996-11-01

    The early detection of breast cancer is essential for increasing the survival rate of the disease. Today, mammography is the only breast screening technique capable of detecting breast cancer at a very early stage. The presence of a breast tumor is indicated by some features on the mammogram. One sign of malignancy is the presence of clusters of fine, granular microcalcifications. We present here a three-step method for detecting and characterizing these microcalcifications. We begin with the detection of potential candidates. The aim of this first step is to detect all the pixels that could be a microcalcification. Then we focus on our specific region growing technique which provides an accurate extraction of the shape of the region corresponding to each detected growing technique which provides an accurate extraction of the shape of the region corresponding to each detected seed. This second step is essential because microcalcifications shape is a very important feature for the diagnosis. It is then possible to determine precise parameters to characterize these microcalcifications. This three-step method has been evaluated on a set of images form the mammographic image analysis society database.

  5. Image segmentation by iterative parallel region growing with application to data compression and image analysis

    NASA Technical Reports Server (NTRS)

    Tilton, James C.

    1988-01-01

    Image segmentation can be a key step in data compression and image analysis. However, the segmentation results produced by most previous approaches to region growing are suspect because they depend on the order in which portions of the image are processed. An iterative parallel segmentation algorithm avoids this problem by performing globally best merges first. Such a segmentation approach, and two implementations of the approach on NASA's Massively Parallel Processor (MPP) are described. Application of the segmentation approach to data compression and image analysis is then described, and results of such application are given for a LANDSAT Thematic Mapper image.

  6. Climate-Smart Landscapes for Managing Water Resources in the Tea Growing Regions of Northeast India

    NASA Astrophysics Data System (ADS)

    Gupta, N.; Biggs, E. M.; Saikia, S. D.; Duncan, J.

    2015-12-01

    Tea is an important global agricultural commodity, both commercially and culturally. Assam, an agrarian state in northeast India is the largest single tea growing region in the world and the productivity (both in terms of quantity and quality) requires a specific range of enviro-climatic conditions. Precipitation and temperature are two climate factors which highly influence productivity. Thus water plays a critical role in sustaining future tea production in Assam. Recently the region has been affected by heterogeneous spatiotemporal distributions of precipitation and rising temperatures. This has led to temporally varying drought-like conditions during the tea production season, reducing crop resilience and degrading yield quality. Quantifying regional climate-yield characteristics enables more effective decision-making regarding climate change mitigation, water resources management and adaptation to sustain (and enhance) future tea crop production. This research used a panel based regression model to statistically quantify the extent to which precipitation and temperature variables are associated with changes in tea yield. Monthly time-series climate and yield data were regressed for the period 2004 to 2014. Yield data were obtained from 80 tea estates across the four main tea growing regions of Assam, and 120 climate variables were selected for analysis. Results indicate that periods of drought (e.g. more than 10 consecutive days of zero precipitation) are significantly associated with reductions in yield, whereas periods of intense precipitation (e.g. number of days where the 95th percentile was exceeded) are generally associated with increased yield. These results have provided an enhanced understanding of climate-yield characteristics, which will subsequently be used to deliver more climate-smart advisory decision-support services to tea producers in the region. Although water resources management practices, such as water harvesting structures, check dams

  7. Mitigation of Variability among 3D Echocardiography-Derived Regional Strain Values Acquired by Multiple Ultrasound Systems by Vendor Independent Analysis

    PubMed Central

    Streiff, Cole; Zhu, Meihua; Shimada, Eriko; Sahn, David J.; Ashraf, Muhammad

    2016-01-01

    Introduction This study compared the variability of 3D echo derived circumferential and longitudinal strain values computed from vendor-specific and vendor-independent analyses of images acquired using ultrasound systems from different vendors. Methods Ten freshly harvested porcine hearts were studied. Each heart was mounted on a custom designed phantom and driven to simulate normal cardiac motion. Cardiac rotation was digitally controlled and held constant at 5°, while pumped stroke volume (SV) ranged from 30-70ml. Full-volume image data was acquired using three different ultrasound systems from different vendors. The image data was analyzed for longitudinal and circumferential strains (LS, CS) using both vendor-specific and vendor-independent analysis packages. Results Good linear relationships were observed for each vendor-specific analysis package for both CS and LS at the mid-anterior segment, with correlation coefficients ranging from 0.82–0.91 (CS) and 0.86–0.89 (LS). Comparable linear regressions were observed for results determined by a vendor independent program (CS: R = 0.82–0.89; LS: R = 0.86–0.89). Variability between analysis packages was examined via a series of ANOVA tests. A statistical difference was found between vendor-specific analysis packages (p<0.001), while no such difference was observed between ultrasound systems when using the vendor-independent program (p>0.05). Conclusions Circumferential and longitudinal regional strain values differ when quantified by vendor-specific analysis packages; however, this variability is mitigated by use of a vendor-independent quantification method. These results suggest that echocardiograms acquired using different ultrasound systems could be meaningfully compared using vendor-independent software. PMID:27149685

  8. The growing challenges of vector-borne diseases to regionally-aligned forces.

    PubMed

    Robert, Leon L; Debboun, Mustapha

    2014-01-01

    The long-term strategic focus of US foreign policy has pivoted to the Pacific, but tensions in the Middle East require constant attention in the present. As our current role in Afghanistan diminishes, we must seize the opportunity to refocus on the new priority of regionally-aligned forces. The short-term reality requires first reestablishing core warfighting competencies of a smaller Army and then building the capacity of forces focused on regional alignment. The continuing threat of vector-borne and other infectious diseases will present growing challenges to US forces focused on regional alignment and engagement. Greater understanding of these threats, host nation vulnerabilities and capabilities, and the regional presence of international and nongovernmental organizations will enable US forces to respond and engage more effectively and appropriately to accomplish assigned missions and future contingencies. Effective vector surveillance and control has a longstanding and proven record of preventing, reducing, and eliminating vector-borne diseases and must remain a focus of regionally-aligned forces. Operational readiness of armed forces continues to rely heavily on vector surveillance and control, and on personal protection strategies. Regionally-aligned forces must also work closely with the US Department of State and US Agency for International Development, international governments, governmental and nongovernmental organizations, and private organizations operating in the region and know how to effectively interact with these diverse organizations. In addition, a working knowledge of a host country's public health policy, capabilities and economic realities will be essential. Teamwork with previously unfamiliar groups and organizations will be an essential component of working in regional environments and can present unfamiliar tasks for traditionally-trained military units. PMID:25074596

  9. Growing season loss of nitrate at three northeastern hardwood forests: A regional indicator of nitrogen saturation

    SciTech Connect

    Pardo, L.H.; Murdoch, P.E.; Mitchell, M.J.; Driscoll, C.T.; Likens, G.E. )

    1994-06-01

    Nitrogen is typically tightly retained in terrestrial ecosystems in the Northeast. In ecosystems with episodic nitrogen losses, nitrate export during the summer period of high biotic demand remains low. Increasing nitrate loss during the growing season is an early indicator of ecosystems shifting from episodic to chronic nitrogen loss (nitrogen saturation). Studies of nitrogen cycling from Biscuit Brook, Catskills, NY, Huntington Forest, Adirondacks, NY and Hubbard Brook Experimental Forest, White Mountains, NH, showed high nitrate loss at each site during the summer of 1990. This regional pattern many be caused by anthropogenic (higher nitrogen deposition), climatic (temperature and weather interactions), and/or natural (eg. pest outbreaks) disturbance. High nitrate loss causes surface water quality deterioration and may be linked to forest decline. The pattern also demonstrates the need for surface water monitoring on a regional scale to assess the effects of air pollution emissions legislation.

  10. Individual 3D region-of-interest atlas of the human brain: knowledge-based class image analysis for extraction of anatomical objects

    NASA Astrophysics Data System (ADS)

    Wagenknecht, Gudrun; Kaiser, Hans-Juergen; Sabri, Osama; Buell, Udalrich

    2000-06-01

    After neural network-based classification of tissue types, the second step of atlas extraction is knowledge-based class image analysis to get anatomically meaningful objects. Basic algorithms are region growing, mathematical morphology operations, and template matching. A special algorithm was designed for each object. The class label of each voxel and the knowledge about the relative position of anatomical objects to each other and to the sagittal midplane of the brain can be utilized for object extraction. User interaction is only necessary to define starting, mid- and end planes for most object extractions and to determine the number of iterations for erosion and dilation operations. Extraction can be done for the following anatomical brain regions: cerebrum; cerebral hemispheres; cerebellum; brain stem; white matter (e.g., centrum semiovale); gray matter [cortex, frontal, parietal, occipital, temporal lobes, cingulum, insula, basal ganglia (nuclei caudati, putamen, thalami)]. For atlas- based quantification of functional data, anatomical objects can be convoluted with the point spread function of functional data to take into account the different resolutions of morphological and functional modalities. This method allows individual atlas extraction from MRI image data of a patient without the need of warping individual data to an anatomical or statistical MRI brain atlas.

  11. Evaluating the vegetation growing season changes in the arid region of northwestern China

    NASA Astrophysics Data System (ADS)

    Wang, Yanfang; Shen, Yanjun; Sun, Fubao; Chen, Yaning

    2014-11-01

    Temperature has long been accepted as the major controlling factor in determining vegetation phenology in the middle and higher latitudes. The influence of water availability is often overlooked even in arid and semi-arid environments. We compared vegetation phenology metrics derived from both in situ temperature and satellite-based normalized difference vegetation index (NDVI) observations from 1982 to 2006 by an example of the arid region of northwestern China. From the satellite-based results, it was found the start of the growing season (SOS) advanced by 0.37 days year-1 and the end of the growing season (EOS) delayed by 0.61 days year-1 in Southern Xinjiang over 25 years. In the Tianshan Mountains, the SOS advanced by 0.35 days year-1 and the EOS delayed by 0.31 days year-1. There were almost no changes in Northern Xinjiang. Compared with satellite-based results, those estimates based on temperature contain less details of spatial variability of vegetation phenology. Interestingly, they show different and at times reversed spatial patterns from the satellite results arising from water limitation. Phenology metrics derived from temperature and NDVI conclude that water limitation of onset of the growing season is more severe than the cessation. Phenology spatial patterns of four oases in Southern Xingjiang show that, on average, there is a delay of the SOS of 1.6 days/10 km of distance from the mountain outlet stations. Our results underline the importance of water availability in determining the vegetation phenology in arid regions and can lead to important consequences in interpreting the possible change of vegetation phenology with climate.

  12. Forecasting municipal solid waste generation in a fast-growing urban region with system dynamics modeling.

    PubMed

    Dyson, Brian; Chang, Ni-Bin

    2005-01-01

    Both planning and design of municipal solid waste management systems require accurate prediction of solid waste generation. Yet achieving the anticipated prediction accuracy with regard to the generation trends facing many fast-growing regions is quite challenging. The lack of complete historical records of solid waste quantity and quality due to insufficient budget and unavailable management capacity has resulted in a situation that makes the long-term system planning and/or short-term expansion programs intangible. To effectively handle these problems based on limited data samples, a new analytical approach capable of addressing socioeconomic and environmental situations must be developed and applied for fulfilling the prediction analysis of solid waste generation with reasonable accuracy. This study presents a new approach--system dynamics modeling--for the prediction of solid waste generation in a fast-growing urban area based on a set of limited samples. To address the impact on sustainable development city wide, the practical implementation was assessed by a case study in the city of San Antonio, Texas (USA). This area is becoming one of the fastest-growing regions in North America due to the economic impact of the North American Free Trade Agreement (NAFTA). The analysis presents various trends of solid waste generation associated with five different solid waste generation models using a system dynamics simulation tool--Stella. Research findings clearly indicate that such a new forecasting approach may cover a variety of possible causative models and track inevitable uncertainties down when traditional statistical least-squares regression methods are unable to handle such issues. PMID:16009300

  13. MARGA: multispectral adaptive region growing algorithm for brain extraction on axial MRI.

    PubMed

    Roura, Eloy; Oliver, Arnau; Cabezas, Mariano; Vilanova, Joan C; Rovira, Alex; Ramió-Torrentà, Lluís; Lladó, Xavier

    2014-02-01

    Brain extraction, also known as skull stripping, is one of the most important preprocessing steps for many automatic brain image analysis. In this paper we present a new approach called Multispectral Adaptive Region Growing Algorithm (MARGA) to perform the skull stripping process. MARGA is based on a region growing (RG) algorithm which uses the complementary information provided by conventional magnetic resonance images (MRI) such as T1-weighted and T2-weighted to perform the brain segmentation. MARGA can be seen as an extension of the skull stripping method proposed by Park and Lee (2009) [1], enabling their use in both axial views and low quality images. Following the same idea, we first obtain seed regions that are then spread using a 2D RG algorithm which behaves differently in specific zones of the brain. This adaptation allows to deal with the fact that middle MRI slices have better image contrast between the brain and non-brain regions than superior and inferior brain slices where the contrast is smaller. MARGA is validated using three different databases: 10 simulated brains from the BrainWeb database; 2 data sets from the National Alliance for Medical Image Computing (NAMIC) database, the first one consisting in 10 normal brains and 10 brains of schizophrenic patients acquired with a 3T GE scanner, and the second one consisting in 5 brains from lupus patients acquired with a 3T Siemens scanner; and 10 brains of multiple sclerosis patients acquired with a 1.5T scanner. We have qualitatively and quantitatively compared MARGA with the well-known Brain Extraction Tool (BET), Brain Surface Extractor (BSE) and Statistical Parametric Mapping (SPM) approaches. The obtained results demonstrate the validity of MARGA, outperforming the results of those standard techniques. PMID:24380649

  14. Radiochromic 3D Detectors

    NASA Astrophysics Data System (ADS)

    Oldham, Mark

    2015-01-01

    Radiochromic materials exhibit a colour change when exposed to ionising radiation. Radiochromic film has been used for clinical dosimetry for many years and increasingly so recently, as films of higher sensitivities have become available. The two principle advantages of radiochromic dosimetry include greater tissue equivalence (radiologically) and the lack of requirement for development of the colour change. In a radiochromic material, the colour change arises direct from ionising interactions affecting dye molecules, without requiring any latent chemical, optical or thermal development, with important implications for increased accuracy and convenience. It is only relatively recently however, that 3D radiochromic dosimetry has become possible. In this article we review recent developments and the current state-of-the-art of 3D radiochromic dosimetry, and the potential for a more comprehensive solution for the verification of complex radiation therapy treatments, and 3D dose measurement in general.

  15. Segmentation of retinal vessels by means of directional response vector similarity and region growing.

    PubMed

    Lázár, István; Hajdu, András

    2015-11-01

    This paper presents a novel retinal vessel segmentation method. Opposed to the general approach in similar directional methods, where only the maximal or summed responses of a pixel are used, here, the directional responses of a pixel are considered as a vector. The segmentation method is a unique region growing procedure which combines a hysteresis thresholding scheme with the response vector similarity of adjacent pixels. A vessel score map is constructed as the combination of the statistical measures of the response vectors and its local maxima to provide the seeds for the region growing procedure. A nearest neighbor classifier based on a rotation invariant response vector similarity measure is used to filter the seed points. Many techniques in the literature that capture the Gaussian-like cross-section of vessels suffer from the drawback of giving false high responses to the steep intensity transitions at the boundary of the optic disc and bright lesions. To overcome this issue, we also propose a symmetry constrained multiscale matched filtering technique. The proposed vessel segmentation method has been tested on three publicly available image sets, where its performance proved to be competitive with the state-of-the-art and comparable to the accuracy of a human observer, as well. PMID:26432200

  16. Integrating depth functions and hyper-scale terrain analysis for 3D soil organic carbon modeling in agricultural fields at regional scale

    NASA Astrophysics Data System (ADS)

    Ramirez-Lopez, L.; van Wesemael, B.; Stevens, A.; Doetterl, S.; Van Oost, K.; Behrens, T.; Schmidt, K.

    2012-04-01

    different depth functions, ii. The use of different machine learning approaches for modeling the parameters of the fitted depth functions using the ConMap features and iii. The influence of different spatial scales on the SOC profile distribution variability. Keywords: 3D modeling, Digital soil mapping, Depth functions, Terrain analysis. Reference Behrens, T., K. Schmidt, K., Zhu, A.X. Scholten, T. 2010. The ConMap approach for terrain-based digital soil mapping. European Journal of Soil Science, v. 61, p.133-143.

  17. Pituitary Adenoma Volumetry with 3D Slicer

    PubMed Central

    Nimsky, Christopher; Kikinis, Ron

    2012-01-01

    In this study, we present pituitary adenoma volumetry using the free and open source medical image computing platform for biomedical research: (3D) Slicer. Volumetric changes in cerebral pathologies like pituitary adenomas are a critical factor in treatment decisions by physicians and in general the volume is acquired manually. Therefore, manual slice-by-slice segmentations in magnetic resonance imaging (MRI) data, which have been obtained at regular intervals, are performed. In contrast to this manual time consuming slice-by-slice segmentation process Slicer is an alternative which can be significantly faster and less user intensive. In this contribution, we compare pure manual segmentations of ten pituitary adenomas with semi-automatic segmentations under Slicer. Thus, physicians drew the boundaries completely manually on a slice-by-slice basis and performed a Slicer-enhanced segmentation using the competitive region-growing based module of Slicer named GrowCut. Results showed that the time and user effort required for GrowCut-based segmentations were on average about thirty percent less than the pure manual segmentations. Furthermore, we calculated the Dice Similarity Coefficient (DSC) between the manual and the Slicer-based segmentations to proof that the two are comparable yielding an average DSC of 81.97±3.39%. PMID:23240062

  18. Bootstrapping 3D fermions

    NASA Astrophysics Data System (ADS)

    Iliesiu, Luca; Kos, Filip; Poland, David; Pufu, Silviu S.; Simmons-Duffin, David; Yacoby, Ran

    2016-03-01

    We study the conformal bootstrap for a 4-point function of fermions < ψψψψ> in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge C T . We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N . We also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.

  19. SU-C-9A-01: Parameter Optimization in Adaptive Region-Growing for Tumor Segmentation in PET

    SciTech Connect

    Tan, S; Xue, M; Chen, W; D'Souza, W; Lu, W; Li, H

    2014-06-01

    Purpose: To design a reliable method to determine the optimal parameter in the adaptive region-growing (ARG) algorithm for tumor segmentation in PET. Methods: The ARG uses an adaptive similarity criterion m - fσ ≤ I-PET ≤ m + fσ, so that a neighboring voxel is appended to the region based on its similarity to the current region. When increasing the relaxing factor f (f ≥ 0), the resulting volumes monotonically increased with a sharp increase when the region just grew into the background. The optimal f that separates the tumor from the background is defined as the first point with the local maximum curvature on an Error function fitted to the f-volume curve. The ARG was tested on a tumor segmentation Benchmark that includes ten lung cancer patients with 3D pathologic tumor volume as ground truth. For comparison, the widely used 42% and 50% SUVmax thresholding, Otsu optimal thresholding, Active Contours (AC), Geodesic Active Contours (GAC), and Graph Cuts (GC) methods were tested. The dice similarity index (DSI), volume error (VE), and maximum axis length error (MALE) were calculated to evaluate the segmentation accuracy. Results: The ARG provided the highest accuracy among all tested methods. Specifically, the ARG has an average DSI, VE, and MALE of 0.71, 0.29, and 0.16, respectively, better than the absolute 42% thresholding (DSI=0.67, VE= 0.57, and MALE=0.23), the relative 42% thresholding (DSI=0.62, VE= 0.41, and MALE=0.23), the absolute 50% thresholding (DSI=0.62, VE=0.48, and MALE=0.21), the relative 50% thresholding (DSI=0.48, VE=0.54, and MALE=0.26), OTSU (DSI=0.44, VE=0.63, and MALE=0.30), AC (DSI=0.46, VE= 0.85, and MALE=0.47), GAC (DSI=0.40, VE= 0.85, and MALE=0.46) and GC (DSI=0.66, VE= 0.54, and MALE=0.21) methods. Conclusions: The results suggest that the proposed method reliably identified the optimal relaxing factor in ARG for tumor segmentation in PET. This work was supported in part by National Cancer Institute Grant R01 CA172638; The

  20. Geographically Sourcing Cocaine’s Origin – Delineation of the Nineteen Major Coca Growing Regions in South America

    NASA Astrophysics Data System (ADS)

    Mallette, Jennifer R.; Casale, John F.; Jordan, James; Morello, David R.; Beyer, Paul M.

    2016-03-01

    Previously, geo-sourcing to five major coca growing regions within South America was accomplished. However, the expansion of coca cultivation throughout South America made sub-regional origin determinations increasingly difficult. The former methodology was recently enhanced with additional stable isotope analyses (2H and 18O) to fully characterize cocaine due to the varying environmental conditions in which the coca was grown. An improved data analysis method was implemented with the combination of machine learning and multivariate statistical analysis methods to provide further partitioning between growing regions. Here, we show how the combination of trace cocaine alkaloids, stable isotopes, and multivariate statistical analyses can be used to classify illicit cocaine as originating from one of 19 growing regions within South America. The data obtained through this approach can be used to describe current coca cultivation and production trends, highlight trafficking routes, as well as identify new coca growing regions.

  1. Geographically Sourcing Cocaine’s Origin – Delineation of the Nineteen Major Coca Growing Regions in South America

    PubMed Central

    Mallette, Jennifer R.; Casale, John F.; Jordan, James; Morello, David R.; Beyer, Paul M.

    2016-01-01

    Previously, geo-sourcing to five major coca growing regions within South America was accomplished. However, the expansion of coca cultivation throughout South America made sub-regional origin determinations increasingly difficult. The former methodology was recently enhanced with additional stable isotope analyses (2H and 18O) to fully characterize cocaine due to the varying environmental conditions in which the coca was grown. An improved data analysis method was implemented with the combination of machine learning and multivariate statistical analysis methods to provide further partitioning between growing regions. Here, we show how the combination of trace cocaine alkaloids, stable isotopes, and multivariate statistical analyses can be used to classify illicit cocaine as originating from one of 19 growing regions within South America. The data obtained through this approach can be used to describe current coca cultivation and production trends, highlight trafficking routes, as well as identify new coca growing regions. PMID:27006288

  2. Kinematic Analysis of Fold-Thrust-Belt Using Integrated Analogue Sandbox Modeling and 3D Palinspatic Reconstructions in Babar-Selaru Area, Banda Sea Region, Indonesia

    NASA Astrophysics Data System (ADS)

    Sapiie, Benyamin; Hadiana, Meli; Kurniawan, Ade; Daniel, Dicky; Danio, Harya; Fujimoto, Masamichi; Ohara, Michio; Alam Perdana, Lisnanda; Saputra, Afif

    2016-04-01

    Kinematic analysis of Babar-Selaru fold-thrust-belt is challenging and often difficult particularly in conducting seismic interpretation due to complex structural geometries. Resolving such as issue, in this study we proposed to use integrated seismic interpretation, analogue sandbox modeling and 3D palinspatic reconstructions. This paper is presented results of detail kinematic analysis for understanding tectonic evolution as well as mechanism of fold-thrust-belt in relation to their hydrocarbon prospect. Babar-Selaru Area is located within the collisional boundary between Australian continental margin and Banda Arc region of Indonesia. The area is characterized by complex deformation zone of fold-thrust-belt, involving Mesozoic and Tertiary sedimentary sequences of Australian continental margin. The age of deformation is ranging from 8-5 Ma. Seismic interpretations show two styles of faults developed in the area, which are thrust and normal faults system. The last deformation observed in the Babar Selaru area is controlled by south verging imbricated thin-skinned thrust fault system, with the staircase style of fault detachment. Although, both structural styles occurred in separated locations, they are formed not only in the same time but also related in time and space. Total extension is ranging from 1-3 % where average shortening is in the order of 35-38%. Sandbox modeling is an effective way to study and understand the style, pattern and geometry of the deformed sedimentary sequences in the study area. Based on comparison of five settings experiments (mainly different geological boundary condition) with more than 50 different modeling; deformation is particularly controlled by types and thickness of lithology package and detachment geometry. These two parameters were quite sensitive in generating different deformation style and pattern in Babar-Selaru fold-thrust-belt. Therefore, choosing the right combination of stratigraphy model and material setting are

  3. Experiments performed with bubbly flow in vertical pipes at different flow conditions covering the transition region: simulation by coupling Eulerian, Lagrangian and 3D random walks models

    NASA Astrophysics Data System (ADS)

    Muñoz-Cobo, José; Chiva, Sergio; El Aziz Essa, Mohamed; Mendes, Santos

    2012-08-01

    Two phase flow experiments with different superficial velocities of gas and water were performed in a vertical upward isothermal cocurrent air-water flow column with conditions ranging from bubbly flow, with very low void fraction, to transition flow with some cap and slug bubbles and void fractions around 25%. The superficial velocities of the liquid and the gas phases were varied from 0.5 to 3 m/s and from 0 to 0.6 m/s, respectively. Also to check the effect of changing the surface tension on the previous experiments small amounts of 1-butanol were added to the water. These amounts range from 9 to 75 ppm and change the surface tension. This study is interesting because in real cases the surface tension of the water diminishes with temperature, and with this kind of experiments we can study indirectly the effect of changing the temperature on the void fraction distribution. The following axial and radial distributions were measured in all these experiments: void fraction, interfacial area concentration, interfacial velocity, Sauter mean diameter and turbulence intensity. The range of values of the gas superficial velocities in these experiments covered the range from bubbly flow to the transition to cap/slug flow. Also with transition flow conditions we distinguish two groups of bubbles in the experiments, the small spherical bubbles and the cap/slug bubbles. Special interest was devoted to the transition region from bubbly to cap/slug flow; the goal was to understand the physical phenomena that take place during this transition A set of numerical simulations of some of these experiments for bubbly flow conditions has been performed by coupling a Lagrangian code, that tracks the three dimensional motion of the individual bubbles in cylindrical coordinates inside the field of the carrier liquid, to an Eulerian model that computes the magnitudes of continuous phase and to a 3D random walk model that takes on account the fluctuation in the velocity field of the

  4. Application of the Kolmogorov-Zurbenko filter and the decoupled direct 3D method for the dynamic evaluation of a regional air quality model

    NASA Astrophysics Data System (ADS)

    Kang, Daiwen; Hogrefe, Christian; Foley, Kristen L.; Napelenok, Sergey L.; Mathur, Rohit; Trivikrama Rao, S.

    2013-12-01

    Regional air quality models are being used in a policy-setting to assess the changes in air pollutant concentrations from changes in emissions and meteorology. Dynamic evaluation entails examination of a retrospective case(s) to examine whether an air quality model has properly predicted the air quality response to known changes in emissions and/or meteorology. In this study, the Kolmogorov-Zurbenko (KZ) filter has been used to spectrally decompose pollutant time series into different forcings that are controlled by different atmospheric processes influencing the predicted and observed pollutant concentrations. Through analyses of the different components influenced by different forcings as part of dynamic model evaluation, we can discern which of the component(s) or scale(s) of forcing are simulated well by the model and the component(s) or scale(s) of forcing needing further improvement in the model. The KZ filter has been applied to both the observed and Community Multiscale Air Quality (CMAQ) model-predicted summertime ozone (O3) time series in years 2002 and 2005. The 2002-2005 time period is a good candidate for the dynamic evaluation case study because of the large changes in NOx emissions as a result of the U.S. Environmental Protection Agency's (USEPA) NOx State Implementation Plan (SIP) call together with a gradual decline in mobile emissions. Results suggest that the CMAQ model performs similarly for both years in terms of capturing the observed synoptic-scale forcing. However, the changes in the observed ozone baseline component (i.e. longer-term variations) are not properly captured by the model at some locations. The factors contributing to the ozone baseline include emissions loading, boundary conditions, and other parameters that vary slowly over time. Analysis using a reduced form model developed from the sensitivity coefficients calculated from the decoupled direct method in three dimensions (DDM-3D) reveals that ground-level NOx emissions

  5. Distributions of Salmonella Subtypes Differ between Two U.S. Produce-Growing Regions

    PubMed Central

    Danyluk, Michelle D.; Worobo, Randy W.; Wiedmann, Martin

    2014-01-01

    Salmonella accounts for approximately 50% of produce-associated outbreaks in the United States, several of which have been traced back to contamination in the produce production environment. To quantify Salmonella diversity and aid in identification of Salmonella contamination sources, we characterized Salmonella isolates from two geographically diverse produce-growing regions in the United States. Initially, we characterized the Salmonella serotype and subtype diversity associated with 1,677 samples collected from 33 produce farms in New York State (NYS). Among these 1,677 samples, 74 were Salmonella positive, yielding 80 unique isolates (from 147 total isolates), which represented 14 serovars and 23 different pulsed-field gel electrophoresis (PFGE) types. To explore regional Salmonella diversity associated with production environments, we collected a smaller set of samples (n = 65) from South Florida (SFL) production environments and compared the Salmonella diversity associated with these samples with the diversity found among NYS production environments. Among these 65 samples, 23 were Salmonella positive, yielding 32 unique isolates (from 81 total isolates), which represented 11 serovars and 17 different PFGE types. The most common serovars isolated in NYS were Salmonella enterica serovars Newport, Cerro, and Thompson, while common serovars isolated in SFL were Salmonella serovars Saphra and Newport and S. enterica subsp. diarizonae serovar 50:r:z. High PFGE type diversity (Simpson's diversity index, 0.90 ± 0.02) was observed among Salmonella isolates across both regions; only three PFGE types were shared between the two regions. The probability of three or fewer shared PFGE types was <0.000001; therefore, Salmonella isolates were considerably different between the two sampled regions. These findings suggest the potential for PFGE-based source tracking of Salmonella in production environments. PMID:24747908

  6. Molecular characterization of tea mosquito bug from tea growing regions of India.

    PubMed

    Suganthi, M; Chandrashekara, K N; Arvinth, S; Raj Kumar, R

    2016-09-01

    The tea mosquito bug, Helopeltis (Hemiptera: Miridae), is an insidious pest that poses a significant economical threat to tea plantations. As a basic first step to control this pest is authentic identification, but the inability to determine morphological characters of Helopeltis species makes this process very difficult. DNA barcoding is a reliable alternative to traditional morphological identification of this pest. Since tea is cultivated in different parts of the country, an attempt was made to molecular characterization of Helopeltis. This is the first report on molecular identification and diversity characterization of Helopeltis collected from tea growing regions of southern and north India, using cytochrome c oxidase subunit I (COI) gene of mitochondrial (mt) DNA. Beginning with the molecular identification of this pest is essential to start an effective pest management strategy, and will provide basic information for diffusion pattern, population dynamics and chemical application. PMID:26186305

  7. 3D microscope

    NASA Astrophysics Data System (ADS)

    Iizuka, Keigo

    2008-02-01

    In order to circumvent the fact that only one observer can view the image from a stereoscopic microscope, an attachment was devised for displaying the 3D microscopic image on a large LCD monitor for viewing by multiple observers in real time. The principle of operation, design, fabrication, and performance are presented, along with tolerance measurements relating to the properties of the cellophane half-wave plate used in the design.

  8. Compact 3D flash lidar video cameras and applications

    NASA Astrophysics Data System (ADS)

    Stettner, Roger

    2010-04-01

    The theory and operation of Advanced Scientific Concepts, Inc.'s (ASC) latest compact 3D Flash LIDAR Video Cameras (3D FLVCs) and a growing number of technical problems and solutions are discussed. The solutions range from space shuttle docking, planetary entry, decent and landing, surveillance, autonomous and manned ground vehicle navigation and 3D imaging through particle obscurants.

  9. Region-growing segmentation to automatically delimit synthetic drumlins in 'real' DEMs

    NASA Astrophysics Data System (ADS)

    Eisank, Clemens; Smith, Mike; Hillier, John

    2013-04-01

    Mapping or 'delimiting' landforms is one of geomorphology's primary tools. Computer-based techniques, such as terrain segmentation, may potentially provide terrain units that are close to the size and shape of landforms. Whether terrain units represent landforms heavily depends on the segmentation algorithm, its settings and the type of underlying land-surface parameters (LSPs). We assess a widely used region-growing technique, i.e. the multiresolution segmentation (MRS) algorithm as implemented in object-based image analysis software, for delimiting drumlins. Supervised testing was based on five synthetic DEMs that included the same set of perfectly known drumlins at different locations. This, for the first time, removes subjectivity from the reference data. Five LSPs were tested, and four variants were computed for each using two pre- and post-processing options. The automated method (1) employs MRS to partition the input LSP into 200 ever coarser terrain unit patterns, (2) identifies the spatially best matching terrain unit for each reference drumlin, and (3) computes four accuracy metrics for quantifying the aerial match between delimited and reference drumlins. MRS performed best on LSPs that are regional, derived from a decluttered DEM and then normalized. Median scale parameters (SPs) for segments best delineating drumlins were relatively stable for the same LSP, but varied significantly between LSPs. Larger drumlins were generally delimited at higher SPs. MRS indicated high robustness against variations in the location and distribution of drumlins.

  10. Masticatory demands induce region-specific changes in mandibular bone density in growing rats.

    PubMed

    Mavropoulos, Anestis; Ammann, Patrick; Bresin, Andrea; Kiliaridis, Stavros

    2005-07-01

    This study investigates the structural adaptation of the mandibular bone when subjected to different masticatory functional and mechanical demands during growth. The effect of two experimental factors, the insertion of a bite block and the alteration of food consistency, on the bone mineral density (BMD) of the mandible was investigated in growing rats. Fifty-two male albino rats were divided into two equal groups, fed with either the standard hard diet or soft diet, at the age of four weeks. After two weeks, half the animals in both groups had their upper molars fitted with an upper posterior bite block. The remaining animals served as a control. Region-specific BMD of the mandible was subsequently measured using dual-energy X-ray absorptiometry (DXA). Soft diet and the consequent reduction of the forces applied to the mandible during mastication resulted in the reduction of BMD in all regions under study. The insertion of the bite-opening appliance (bite block) and the resulting stretching of the soft tissues led to the application of a continuous light force on the lower molars, which was associated with a significant increase of the BMD in the part of the alveolar process just below the root apices. These results raise the question of whether orthodontic treatment with similar appliances may have some, previously unsuspected, short- or long-term effects on the mandibular bone during growth and whether their effects depend on the individual soft-tissue characteristics. PMID:16097232

  11. ShowMe3D

    2012-01-05

    ShowMe3D is a data visualization graphical user interface specifically designed for use with hyperspectral image obtained from the Hyperspectral Confocal Microscope. The program allows the user to select and display any single image from a three dimensional hyperspectral image stack. By moving a slider control, the user can easily move between images of the stack. The user can zoom into any region of the image. The user can select any pixel or region from themore » displayed image and display the fluorescence spectrum associated with that pixel or region. The user can define up to 3 spectral filters to apply to the hyperspectral image and view the image as it would appear from a filter-based confocal microscope. The user can also obtain statistics such as intensity average and variance from selected regions.« less

  12. ShowMe3D

    SciTech Connect

    Sinclair, Michael B

    2012-01-05

    ShowMe3D is a data visualization graphical user interface specifically designed for use with hyperspectral image obtained from the Hyperspectral Confocal Microscope. The program allows the user to select and display any single image from a three dimensional hyperspectral image stack. By moving a slider control, the user can easily move between images of the stack. The user can zoom into any region of the image. The user can select any pixel or region from the displayed image and display the fluorescence spectrum associated with that pixel or region. The user can define up to 3 spectral filters to apply to the hyperspectral image and view the image as it would appear from a filter-based confocal microscope. The user can also obtain statistics such as intensity average and variance from selected regions.

  13. An Assessment of the Value of Full Tensor Gradient Gravity Data for Determining 3-D Structure in an Integrated Geophysical Interpretation of the Styldrift Region, Bushveld Complex, South Africa

    NASA Astrophysics Data System (ADS)

    Coomber, S. J.; Webb, S. J.

    2006-12-01

    The Bushveld Complex (2 060 2 054 Ma) is the largest known layered mafic intrusion in the world, at 7-9 km thick and covering approximately 65 000 km2, and is mined for its high grades of PGEs and chromium. Styldrift lies in a structurally complex region (due to the intrusion of the Pilanesburg, approximately 1 300 Ma) where dykes, faults, potholes and Iron-Rich Ultramafic Pegmatoids (IRUPs) present a problem to mining activities. Interpretation of 3-D seismic data, constrained by drill-holes, has produced a 3-D geological model in gOcad, which will assist in mine design and planning. A 1 km2 grid over the 3-D geological model has had high resolution ground gravity and ground magnetic data collected over it. Values of the vertical gravitational component were used to calculate the Full Tensor Gradient (FTG) gravity components, by first constructing the equivalent layer. Airborne FTG gravity data have been flown over the area, which may be compared to the calculated ground data, to test the accuracy of the FTG calculation. Aeromagnetic data over the region may also be compared to the ground data. The calculated FTG gravity data and magnetic data were used to run inversions (steepest descent and UBC algorithms) on the 3-D geological model. Highly reliable inversions of the FTG gravity data adjusted the lithological contacts of the 3-D geological model, constrained by seismic and borehole data, as well as densities of norites and anorthosites in the model, constrained by down-hole density measurements. A second 1 km2 grid, in close proximity to the first grid but with no corresponding seismic data, also had gravity and magnetic data (both ground and airborne) collected over it. A simple 3-D geological model was constructed, with lithological contacts and densities constrained by borehole data. Inversions of the calculated FTG gravity and magnetic data, and extending geological trends of the first geological model, lead to improvements in this geological model.

  14. Geospatial Modelling Approach for 3d Urban Densification Developments

    NASA Astrophysics Data System (ADS)

    Koziatek, O.; Dragićević, S.; Li, S.

    2016-06-01

    With growing populations, economic pressures, and the need for sustainable practices, many urban regions are rapidly densifying developments in the vertical built dimension with mid- and high-rise buildings. The location of these buildings can be projected based on key factors that are attractive to urban planners, developers, and potential buyers. Current research in this area includes various modelling approaches, such as cellular automata and agent-based modelling, but the results are mostly linked to raster grids as the smallest spatial units that operate in two spatial dimensions. Therefore, the objective of this research is to develop a geospatial model that operates on irregular spatial tessellations to model mid- and high-rise buildings in three spatial dimensions (3D). The proposed model is based on the integration of GIS, fuzzy multi-criteria evaluation (MCE), and 3D GIS-based procedural modelling. Part of the City of Surrey, within the Metro Vancouver Region, Canada, has been used to present the simulations of the generated 3D building objects. The proposed 3D modelling approach was developed using ESRI's CityEngine software and the Computer Generated Architecture (CGA) language.

  15. 3-D Flyover Visualization of Veil Nebula

    NASA Video Gallery

    This 3-D visualization flies across a small portion of the Veil Nebula as photographed by the Hubble Space Telescope. This region is a small part of a huge expanding remnant from a star that explod...

  16. Multiviewer 3D monitor

    NASA Astrophysics Data System (ADS)

    Kostrzewski, Andrew A.; Aye, Tin M.; Kim, Dai Hyun; Esterkin, Vladimir; Savant, Gajendra D.

    1998-09-01

    Physical Optics Corporation has developed an advanced 3-D virtual reality system for use with simulation tools for training technical and military personnel. This system avoids such drawbacks of other virtual reality (VR) systems as eye fatigue, headaches, and alignment for each viewer, all of which are due to the need to wear special VR goggles. The new system is based on direct viewing of an interactive environment. This innovative holographic multiplexed screen technology makes it unnecessary for the viewer to wear special goggles.

  17. 3D Audio System

    NASA Technical Reports Server (NTRS)

    1992-01-01

    Ames Research Center research into virtual reality led to the development of the Convolvotron, a high speed digital audio processing system that delivers three-dimensional sound over headphones. It consists of a two-card set designed for use with a personal computer. The Convolvotron's primary application is presentation of 3D audio signals over headphones. Four independent sound sources are filtered with large time-varying filters that compensate for motion. The perceived location of the sound remains constant. Possible applications are in air traffic control towers or airplane cockpits, hearing and perception research and virtual reality development.

  18. Magmatic Systems in 3-D

    NASA Astrophysics Data System (ADS)

    Kent, G. M.; Harding, A. J.; Babcock, J. M.; Orcutt, J. A.; Bazin, S.; Singh, S.; Detrick, R. S.; Canales, J. P.; Carbotte, S. M.; Diebold, J.

    2002-12-01

    Multichannel seismic (MCS) images of crustal magma chambers are ideal targets for advanced visualization techniques. In the mid-ocean ridge environment, reflections originating at the melt-lens are well separated from other reflection boundaries, such as the seafloor, layer 2A and Moho, which enables the effective use of transparency filters. 3-D visualization of seismic reflectivity falls into two broad categories: volume and surface rendering. Volumetric-based visualization is an extremely powerful approach for the rapid exploration of very dense 3-D datasets. These 3-D datasets are divided into volume elements or voxels, which are individually color coded depending on the assigned datum value; the user can define an opacity filter to reject plotting certain voxels. This transparency allows the user to peer into the data volume, enabling an easy identification of patterns or relationships that might have geologic merit. Multiple image volumes can be co-registered to look at correlations between two different data types (e.g., amplitude variation with offsets studies), in a manner analogous to draping attributes onto a surface. In contrast, surface visualization of seismic reflectivity usually involves producing "fence" diagrams of 2-D seismic profiles that are complemented with seafloor topography, along with point class data, draped lines and vectors (e.g. fault scarps, earthquake locations and plate-motions). The overlying seafloor can be made partially transparent or see-through, enabling 3-D correlations between seafloor structure and seismic reflectivity. Exploration of 3-D datasets requires additional thought when constructing and manipulating these complex objects. As numbers of visual objects grow in a particular scene, there is a tendency to mask overlapping objects; this clutter can be managed through the effective use of total or partial transparency (i.e., alpha-channel). In this way, the co-variation between different datasets can be investigated

  19. 3D Surgical Simulation

    PubMed Central

    Cevidanes, Lucia; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael

    2009-01-01

    This paper discusses the development of methods for computer-aided jaw surgery. Computer-aided jaw surgery allows us to incorporate the high level of precision necessary for transferring virtual plans into the operating room. We also present a complete computer-aided surgery (CAS) system developed in close collaboration with surgeons. Surgery planning and simulation include construction of 3D surface models from Cone-beam CT (CBCT), dynamic cephalometry, semi-automatic mirroring, interactive cutting of bone and bony segment repositioning. A virtual setup can be used to manufacture positioning splints for intra-operative guidance. The system provides further intra-operative assistance with the help of a computer display showing jaw positions and 3D positioning guides updated in real-time during the surgical procedure. The CAS system aids in dealing with complex cases with benefits for the patient, with surgical practice, and for orthodontic finishing. Advanced software tools for diagnosis and treatment planning allow preparation of detailed operative plans, osteotomy repositioning, bone reconstructions, surgical resident training and assessing the difficulties of the surgical procedures prior to the surgery. CAS has the potential to make the elaboration of the surgical plan a more flexible process, increase the level of detail and accuracy of the plan, yield higher operative precision and control, and enhance documentation of cases. Supported by NIDCR DE017727, and DE018962 PMID:20816308

  20. Medical 3D Printing for the Radiologist.

    PubMed

    Mitsouras, Dimitris; Liacouras, Peter; Imanzadeh, Amir; Giannopoulos, Andreas A; Cai, Tianrun; Kumamaru, Kanako K; George, Elizabeth; Wake, Nicole; Caterson, Edward J; Pomahac, Bohdan; Ho, Vincent B; Grant, Gerald T; Rybicki, Frank J

    2015-01-01

    While use of advanced visualization in radiology is instrumental in diagnosis and communication with referring clinicians, there is an unmet need to render Digital Imaging and Communications in Medicine (DICOM) images as three-dimensional (3D) printed models capable of providing both tactile feedback and tangible depth information about anatomic and pathologic states. Three-dimensional printed models, already entrenched in the nonmedical sciences, are rapidly being embraced in medicine as well as in the lay community. Incorporating 3D printing from images generated and interpreted by radiologists presents particular challenges, including training, materials and equipment, and guidelines. The overall costs of a 3D printing laboratory must be balanced by the clinical benefits. It is expected that the number of 3D-printed models generated from DICOM images for planning interventions and fabricating implants will grow exponentially. Radiologists should at a minimum be familiar with 3D printing as it relates to their field, including types of 3D printing technologies and materials used to create 3D-printed anatomic models, published applications of models to date, and clinical benefits in radiology. Online supplemental material is available for this article. PMID:26562233

  1. A contour-line color layer separation algorithm based on fuzzy clustering and region growing

    NASA Astrophysics Data System (ADS)

    Liu, Tiange; Miao, Qiguang; Xu, Pengfei; Tong, Yubing; Song, Jianfeng; Xia, Ge; Yang, Yun; Zhai, Xiaojie

    2016-03-01

    The color layers of contour-lines separated from scanned topographic map are the basis of contour-line extraction, but it is difficult to separate them well due to the color aliasing and mixed color problems. This paper will focus us on contour-line color layer separation and presents a novel approach for it based on fuzzy clustering and Single-prototype Region Growing for Contour-line Layer (SRGCL). The purpose of this paper is to provide a solution for processing scanned topographic maps on which contour-lines are abundant and densely distributed, for example, in the condition similar to hilly areas and mountainous regions, the contour-lines always occupy the largest proportion in linear features and the contour-line separation is the most difficult task. The proposed approach includes steps as follows. First step, line features are extracted from the map to reduce the interference from area features in fuzzy clustering. Second step, fuzzy clustering algorithm is employed to obtain membership matrix of pixels in the line map. Third step, based on the membership matrix, we obtain the most-similar prototype and the second-similar prototype of each pixel as the indicators of the pixel in SRGCL. The spatial relationship and the fuzzy similarity of color features are used in SRGCL to overcome the inaccurate classification of ambiguous pixels. The procedure focusing on single contour-line layer will improve the accuracy of contour-line segmentation result of SRGCL relative to general segmentation methods. We verified the algorithm on several USGS historical maps, the experimental results show that our algorithm produces contour-line color layers with good continuity and few noises, which verifies the improvement in contour-line color layer separation of our algorithm relative to two general segmentation methods.

  2. 3D Reconstruction of Coronary Artery Vascular Smooth Muscle Cells

    PubMed Central

    Luo, Tong; Chen, Huan; Kassab, Ghassan S.

    2016-01-01

    Aims The 3D geometry of individual vascular smooth muscle cells (VSMCs), which are essential for understanding the mechanical function of blood vessels, are currently not available. This paper introduces a new 3D segmentation algorithm to determine VSMC morphology and orientation. Methods and Results A total of 112 VSMCs from six porcine coronary arteries were used in the analysis. A 3D semi-automatic segmentation method was developed to reconstruct individual VSMCs from cell clumps as well as to extract the 3D geometry of VSMCs. A new edge blocking model was introduced to recognize cell boundary while an edge growing was developed for optimal interpolation and edge verification. The proposed methods were designed based on Region of Interest (ROI) selected by user and interactive responses of limited key edges. Enhanced cell boundary features were used to construct the cell’s initial boundary for further edge growing. A unified framework of morphological parameters (dimensions and orientations) was proposed for the 3D volume data. Virtual phantom was designed to validate the tilt angle measurements, while other parameters extracted from 3D segmentations were compared with manual measurements to assess the accuracy of the algorithm. The length, width and thickness of VSMCs were 62.9±14.9μm, 4.6±0.6μm and 6.2±1.8μm (mean±SD). In longitudinal-circumferential plane of blood vessel, VSMCs align off the circumferential direction with two mean angles of -19.4±9.3° and 10.9±4.7°, while an out-of-plane angle (i.e., radial tilt angle) was found to be 8±7.6° with median as 5.7°. Conclusions A 3D segmentation algorithm was developed to reconstruct individual VSMCs of blood vessel walls based on optical image stacks. The results were validated by a virtual phantom and manual measurement. The obtained 3D geometries can be utilized in mathematical models and leads a better understanding of vascular mechanical properties and function. PMID:26882342

  3. Video shot boundary detection using region-growing-based watershed method

    NASA Astrophysics Data System (ADS)

    Wang, Jinsong; Patel, Nilesh; Grosky, William

    2004-10-01

    In this paper, a novel shot boundary detection approach is presented, based on the popular region growing segmentation method - Watershed segmentation. In image processing, gray-scale pictures could be considered as topographic reliefs, in which the numerical value of each pixel of a given image represents the elevation at that point. Watershed method segments images by filling up basins with water starting at local minima, and at points where water coming from different basins meet, dams are built. In our method, each frame in the video sequences is first transformed from the feature space into the topographic space based on a density function. Low-level features are extracted from frame to frame. Each frame is then treated as a point in the feature space. The density of each point is defined as the sum of the influence functions of all neighboring data points. The height function that is originally used in Watershed segmentation is then replaced by inverting the density at the point. Thus, all the highest density values are transformed into local minima. Subsequently, Watershed segmentation is performed in the topographic space. The intuitive idea under our method is that frames within a shot are highly agglomerative in the feature space and have higher possibilities to be merged together, while those frames between shots representing the shot changes are not, hence they have less density values and are less likely to be clustered by carefully extracting the markers and choosing the stopping criterion.

  4. Automatic segmentation of canine retinal OCT using adaptive gradient enhancement and region growing

    NASA Astrophysics Data System (ADS)

    He, Yufan; Sun, Yankui; Chen, Min; Zheng, Yuanjie; Liu, Hui; Leon, Cecilia; Beltran, William; Gee, James C.

    2016-03-01

    In recent years, several studies have shown that the canine retina model offers important insight for our understanding of human retinal diseases. Several therapies developed to treat blindness in such models have already moved onto human clinical trials, with more currently under development [1]. Optical coherence tomography (OCT) offers a high resolution imaging modality for performing in-vivo analysis of the retinal layers. However, existing algorithms for automatically segmenting and analyzing such data have been mostly focused on the human retina. As a result, canine retinal images are often still being analyzed using manual segmentations, which is a slow and laborious task. In this work, we propose a method for automatically segmenting 5 boundaries in canine retinal OCT. The algorithm employs the position relationships between different boundaries to adaptively enhance the gradient map. A region growing algorithm is then used on the enhanced gradient maps to find the five boundaries separately. The automatic segmentation was compared against manual segmentations showing an average absolute error of 5.82 +/- 4.02 microns.

  5. 3D polarimetric purity

    NASA Astrophysics Data System (ADS)

    Gil, José J.; San José, Ignacio

    2010-11-01

    From our previous definition of the indices of polarimetric purity for 3D light beams [J.J. Gil, J.M. Correas, P.A. Melero and C. Ferreira, Monogr. Semin. Mat. G. de Galdeano 31, 161 (2004)], an analysis of their geometric and physical interpretation is presented. It is found that, in agreement with previous results, the first parameter is a measure of the degree of polarization, whereas the second parameter (called the degree of directionality) is a measure of the mean angular aperture of the direction of propagation of the corresponding light beam. This pair of invariant, non-dimensional, indices of polarimetric purity contains complete information about the polarimetric purity of a light beam. The overall degree of polarimetric purity is obtained as a weighted quadratic average of the degree of polarization and the degree of directionality.

  6. 3D field harmonics

    SciTech Connect

    Caspi, S.; Helm, M.; Laslett, L.J.

    1991-03-30

    We have developed an harmonic representation for the three dimensional field components within the windings of accelerator magnets. The form by which the field is presented is suitable for interfacing with other codes that make use of the 3D field components (particle tracking and stability). The field components can be calculated with high precision and reduced cup time at any location (r,{theta},z) inside the magnet bore. The same conductor geometry which is used to simulate line currents is also used in CAD with modifications more readily available. It is our hope that the format used here for magnetic fields can be used not only as a means of delivering fields but also as a way by which beam dynamics can suggest correction to the conductor geometry. 5 refs., 70 figs.

  7. 'Bonneville' in 3-D!

    NASA Technical Reports Server (NTRS)

    2004-01-01

    The Mars Exploration Rover Spirit took this 3-D navigation camera mosaic of the crater called 'Bonneville' after driving approximately 13 meters (42.7 feet) to get a better vantage point. Spirit's current position is close enough to the edge to see the interior of the crater, but high enough and far enough back to get a view of all of the walls. Because scientists and rover controllers are so pleased with this location, they will stay here for at least two more martian days, or sols, to take high resolution panoramic camera images of 'Bonneville' in its entirety. Just above the far crater rim, on the left side, is the rover's heatshield, which is visible as a tiny reflective speck.

  8. Clinical applications of 3-D dosimeters

    NASA Astrophysics Data System (ADS)

    Wuu, Cheng-Shie

    2015-01-01

    Both 3-D gels and radiochromic plastic dosimeters, in conjunction with dose image readout systems (MRI or optical-CT), have been employed to measure 3-D dose distributions in many clinical applications. The 3-D dose maps obtained from these systems can provide a useful tool for clinical dose verification for complex treatment techniques such as IMRT, SRS/SBRT, brachytherapy, and proton beam therapy. These complex treatments present high dose gradient regions in the boundaries between the target and surrounding critical organs. Dose accuracy in these areas can be critical, and may affect treatment outcome. In this review, applications of 3-D gels and PRESAGE dosimeter are reviewed and evaluated in terms of their performance in providing information on clinical dose verification as well as commissioning of various treatment modalities. Future interests and clinical needs on studies of 3-D dosimetry are also discussed.

  9. Pushing the Limits of Geological Mapping Outside the Earth: 3D Modeling of Strike-Slip and Extensional Fault Systems in Meridiani Planum Region, Mars.

    NASA Astrophysics Data System (ADS)

    Vidal Royo, O.

    2014-12-01

    GIS and geological modeling software have radically changed the means by which geological mapping is produced, published and visualized. This type of software environment normally requires a spatially aware reference system to position data and interpretation, often referred as georeferenced data (i.e. geographic data referenced on the Earth). However, for this study we coin the term areoreferenced data (i.e. Mars-referenced "geographic" data). Thanks to the wealth of areoreferenced data made available by the NASA and the HiRise at University of Arizona it is now possible to carry out 3D areographic and areologic (i.e. related to the topography and geology of Mars, respectively) reconstructions in great detail. The present work benefits from the availability of software and areographic data, and presents the results of an areologic map and 3D model of the fault systems in the Meridiani Planum of Mars. The work has been carried out in Move™ (developed by Midland Valley Exploration), a geological modeling toolkit that allows for easy data loading in a wide range of formats as well as straightforward 2D/3D model building tools of geological bodies. Initial data consisted of Digital Terrain Model and orthoimages (NASA/JPL/University of Arizona/USGS). From these we have interpreted several structural domains: right-lateral strike-slip systems with associated releasing bends, which gave room to an extensional event causing a horizontal-axis rotation of the bedding. Bedding ranges from subhorizontal in the southern domain where strike-slip prevails to nearly 40º in the central and northern domains, where a more complex interaction between strike-slip and extensional faults is described. The stratigraphic sequence is mainly composed by moderately rounded well laminated basaltic sandstones (Squyres et al., 2004) in which a high component of sulfurs (e.g. sulfate anhydrate, hexahydrite, epsomite, gypsum) and salts (e.g. halite) has been described (Squyres et al., 2004

  10. 3D Ion Temperature Reconstruction

    NASA Astrophysics Data System (ADS)

    Tanabe, Hiroshi; You, Setthivoine; Balandin, Alexander; Inomoto, Michiaki; Ono, Yasushi

    2009-11-01

    The TS-4 experiment at the University of Tokyo collides two spheromaks to form a single high-beta compact toroid. Magnetic reconnection during the merging process heats and accelerates the plasma in toroidal and poloidal directions. The reconnection region has a complex 3D topology determined by the pitch of the spheromak magnetic fields at the merging plane. A pair of multichord passive spectroscopic diagnostics have been established to measure the ion temperature and velocity in the reconnection volume. One setup measures spectral lines across a poloidal plane, retrieving velocity and temperature from Abel inversion. The other, novel setup records spectral lines across another section of the plasma and reconstructs velocity and temperature from 3D vector and 2D scalar tomography techniques. The magnetic field linking both measurement planes is determined from in situ magnetic probe arrays. The ion temperature is then estimated within the volume between the two measurement planes and at the reconnection region. The measurement is followed over several repeatable discharges to follow the heating and acceleration process during the merging reconnection.

  11. Interactive 3D Mars Visualization

    NASA Technical Reports Server (NTRS)

    Powell, Mark W.

    2012-01-01

    The Interactive 3D Mars Visualization system provides high-performance, immersive visualization of satellite and surface vehicle imagery of Mars. The software can be used in mission operations to provide the most accurate position information for the Mars rovers to date. When integrated into the mission data pipeline, this system allows mission planners to view the location of the rover on Mars to 0.01-meter accuracy with respect to satellite imagery, with dynamic updates to incorporate the latest position information. Given this information so early in the planning process, rover drivers are able to plan more accurate drive activities for the rover than ever before, increasing the execution of science activities significantly. Scientifically, this 3D mapping information puts all of the science analyses to date into geologic context on a daily basis instead of weeks or months, as was the norm prior to this contribution. This allows the science planners to judge the efficacy of their previously executed science observations much more efficiently, and achieve greater science return as a result. The Interactive 3D Mars surface view is a Mars terrain browsing software interface that encompasses the entire region of exploration for a Mars surface exploration mission. The view is interactive, allowing the user to pan in any direction by clicking and dragging, or to zoom in or out by scrolling the mouse or touchpad. This set currently includes tools for selecting a point of interest, and a ruler tool for displaying the distance between and positions of two points of interest. The mapping information can be harvested and shared through ubiquitous online mapping tools like Google Mars, NASA WorldWind, and Worldwide Telescope.

  12. Prominent rocks - 3D

    NASA Technical Reports Server (NTRS)

    1997-01-01

    Many prominent rocks near the Sagan Memorial Station are featured in this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. Wedge is at lower left; Shark, Half-Dome, and Pumpkin are at center. Flat Top, about four inches high, is at lower right. The horizon in the distance is one to two kilometers away.

    Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.

    Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  13. 'Diamond' in 3-D

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This 3-D, microscopic imager mosaic of a target area on a rock called 'Diamond Jenness' was taken after NASA's Mars Exploration Rover Opportunity ground into the surface with its rock abrasion tool for a second time.

    Opportunity has bored nearly a dozen holes into the inner walls of 'Endurance Crater.' On sols 177 and 178 (July 23 and July 24, 2004), the rover worked double-duty on Diamond Jenness. Surface debris and the bumpy shape of the rock resulted in a shallow and irregular hole, only about 2 millimeters (0.08 inch) deep. The final depth was not enough to remove all the bumps and leave a neat hole with a smooth floor. This extremely shallow depression was then examined by the rover's alpha particle X-ray spectrometer.

    On Sol 178, Opportunity's 'robotic rodent' dined on Diamond Jenness once again, grinding almost an additional 5 millimeters (about 0.2 inch). The rover then applied its Moessbauer spectrometer to the deepened hole. This double dose of Diamond Jenness enabled the science team to examine the rock at varying layers. Results from those grindings are currently being analyzed.

    The image mosaic is about 6 centimeters (2.4 inches) across.

  14. Spatially explicit exposure assessment for small streams in catchments of the orchard growing region `Lake Constance

    NASA Astrophysics Data System (ADS)

    Golla, B.; Bach, M.; Krumpe, J.

    2009-04-01

    1. Introduction Small streams differ greatly from the standardised water body used in the context of aquatic risk assessment for the regulation of plant protection products in Germany. The standard water body is static, with a depth of 0.3 m and a width of 1.0 m. No dilution or water replacement takes place. Spray drift happens always in direction to the water body. There is no variability in drift deposition rate (90th percentile spray drift deposition values [2]). There is no spray drift filtering by vegetation. The application takes place directly adjacent to the water body. In order to establish a more realistic risk assessment procedure the Federal Office for Consumer Protection and Food Safety (BVL) and the Federal Environment Agency (UBA) aggreed to replace deterministic assumptions with data distributions and spatially explicit data and introduce probabilistic methods [3, 4, 5]. To consider the spatial and temporal variability in the exposure situations of small streams the hydraulic and morphological characteristics of catchments need to be described as well as the spatial distribution of fields treated with pesticides. As small streams are the dominant type of water body in most German orchard regions, we use the growing region Lake Constance as pilot region. 2. Materials and methods During field surveys we derive basic morphological parameters for small streams in the Lake Constance region. The mean water width/depth ratio is 13 with a mean depth of 0.12 m. The average residence time is 5.6 s/m (n=87) [1]. Orchards are mostly located in the upper parts of the catchments. Based on an authoritative dataset on rivers and streams of Germany (ATKIS DLM25) we constructed a directed network topology for the Lake Constance region. The gradient of the riverbed is calculated for river stretches of > 500 m length. The network for the pilot region consists of 2000 km rivers and streams. 500 km stream length are located within a distance of 150 m to orchards. Within

  15. Automatic Segmentation of the Left Atrium from MR Images via Variational Region Growing With a Moments-Based Shape Prior

    PubMed Central

    Zhu, Liangjia; Gao, Yi; Yezzi, Anthony; Tannenbaum, Allen

    2014-01-01

    The planning and evaluation of left atrial ablation procedures are commonly based on the segmentation of the left atrium, which is a challenging task due to large anatomical variations. In this paper, we propose an automatic approach for segmenting the left atrium from magnetic resonance imagery. The segmentation problem is formulated as a problem in variational region growing. In particular, the method starts locally by searching for a seed region of the left atrium from an MR slice. A global constraint is imposed by applying a shape prior to the left atrium represented by Zernike moments. The overall growing process is guided by the robust statistics of intensities from the seed region along with the shape prior to capture the entire atrial region. The robustness and accuracy of our approach are demonstrated by experimental results from 64 human MR images. PMID:24058026

  16. Use of 3D-computed tomography angiography for planning the surgical removal of pineal region meningiomas using Poppen's approach: a report of ten cases and a literature review

    PubMed Central

    2011-01-01

    Background There are several treatment approaches for pineal region meningiomas, such as Poppen's approach, Krause's approach and combinations of the two approaches. We present our experience with the use of 3D-computed tomography angiography for planning the surgical removal of pineal region meningiomas using a suboccipital transtentorial approach (Poppen's approach) and evaluate the role of Poppen's approach. Methods During the period from January 2005 to June 2010, ten patients presented to us with pineal region meningioma. MRI was routinely used to define the tumor size, position, and its relevant complications while 3D-CTA was applied to define the blood supply of the tumor and the venous complex (VC) shift before operations. Most of the meningiomas had developed at both sides of the tentorial plane and extended laterally with typical characteristics of a pineal region tumor. Results All tumors were completely removed surgically without any injury to the VC. Postoperative intracranial infection occurred in one case who recovered after antibiotics were given. Postoperative intraventricular hemorrhage and pneumocephalus were found in one case, but fully recovered after conservative treatment. In the nine cases of concurrent hydrocephalus, this was gradually relieved in eight patients and the single case that became aggravated was successfully treated with ventriculoperitoneal shunt. Moreover, the follow-up MRI examinations did not indicate any recurrence of the meningiomas. Conclusion We found that the use of Poppen's approach is strongly supported for the successful removal of pineal region meningiomas without serious complications. PMID:21676231

  17. SU-E-T-342: Use of Patient Geometry Measurements to Predict Dosimetric Gain with VMAT Over 3D for Chestwall and Regional Nodal Radiation

    SciTech Connect

    Dumane, V; Knoll, M; Green, S; Bakst, R; Hunt, M; Steinberger, E

    2014-06-01

    Purpose: To predict the dosimetric gain of VMAT over 3D for the treatment ofchestwall/IMN/supraclavicular nodes using geometric parameters acquired during simulation Methods: CT scans for 20 left and 20 right sided patients were retrospectively analyzed toobtain percent ipsilateral lung volume included in the PWT and supraclavicular fields, central lung depth (CLD), maximum lung depth (MLD), separation, chestwall concavity (defined here as the product of CLD and separation) and the maximum heart depth (MHD). VMAT, PWT and P/E plans were done for each case. The ipsilateral lung V20 Gy and mean, total lung V20 Gy and mean, heart V25 Gy and mean were noted for each plan. Correlation coefficients were obtained and linear regression models were built using data from the above training set of patients and then tested on 4 new patients. Results: The decrease in ipsilateral lung V20 Gy, total lung V20 Gy, ipsilateral lung mean and total lung mean with VMAT over PWT significantly (p<0.05) correlated with the percent volume of ipsilateral lung included in the PWT and supraclavicular fields with correlation coefficient values of r = 0.83, r = 0.77, r = 0.78 and r = 0.75 respectively. Significant correlations were also found between MHD and the decrease in heart V25 Gy and mean of r = 0.77 and r = 0.67 respectively. Dosimetric improvement with VMAT over P/E plans showed no correlation to any of the geometric parameters investigated in this study. The dosimetric gain predicted for the 4 test cases by the linear regression models given their respective percent ipsilateral lung volumes fell within the 95% confidence intervals around the best regression fit. Conclusion: The percent ipsilateral lung volume appears to be a strong predictor of the dosimetric gain on using VMAT over PWT apriori.

  18. Genetic structure of Xylella fastidiosa within two important grape growing regions in the United States: California and Texas

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Xylella fastidiosa (Xf) causes Pierce’s disease in grapevine. Here, we report on the genetic diversity and population genetic structure of grape Xf strains between two important grape growing regions in the United States, California and Texas. Using multilocus microsatellite markers, high genetic di...

  19. LATITUDINAL AND SEASONAL VARIATION IN CALCULATED ULTRAVIOLET-B IRRADIANCE IN THE RICE-GROWING REGIONS OF ASIA

    EPA Science Inventory

    Ultraviolet-B (UV-B, 280-329 nm) irradiance was calculated for more than 1200 sites in Asia to characterize the spatial and temporal variation in the present UV-B climate for rice-growing regions. he analytical model of Green et al. was used to compute UV-B irradiance for clear s...

  20. No-infill 3D Printing

    NASA Astrophysics Data System (ADS)

    Wei, Xiao-Ran; Zhang, Yu-He; Geng, Guo-Hua

    2016-09-01

    In this paper, we examined how printing the hollow objects without infill via fused deposition modeling, one of the most widely used 3D-printing technologies, by partitioning the objects to shell parts. More specifically, we linked the partition to the exact cover problem. Given an input watertight mesh shape S, we developed region growing schemes to derive a set of surfaces that had inside surfaces that were printable without support on the mesh for the candidate parts. We then employed Monte Carlo tree search over the candidate parts to obtain the optimal set cover. All possible candidate subsets of exact cover from the optimal set cover were then obtained and the bounded tree was used to search the optimal exact cover. We oriented each shell part to the optimal position to guarantee the inside surface was printed without support, while the outside surface was printed with minimum support. Our solution can be applied to a variety of models, closed-hollowed or semi-closed, with or without holes, as evidenced by experiments and performance evaluation on our proposed algorithm.

  1. Incorporating 3D-printing technology in the design of head-caps and electrode drives for recording neurons in multiple brain regions

    PubMed Central

    DeLucca, Michael V.; Haufler, Darrell; Paré, Denis

    2015-01-01

    Recent advances in recording and computing hardware have enabled laboratories to record the electrical activity of multiple brain regions simultaneously. Lagging behind these technical advances, however, are the methods needed to rapidly produce microdrives and head-caps that can flexibly accommodate different recording configurations. Indeed, most available designs target single or adjacent brain regions, and, if multiple sites are targeted, specially constructed head-caps are used. Here, we present a novel design style, for both microdrives and head-caps, which takes advantage of three-dimensional printing technology. This design facilitates targeting of multiple brain regions in various configurations. Moreover, the parts are easily fabricated in large quantities, with only minor hand-tooling and finishing required. PMID:25652930

  2. Incorporating 3D-printing technology in the design of head-caps and electrode drives for recording neurons in multiple brain regions.

    PubMed

    Headley, Drew B; DeLucca, Michael V; Haufler, Darrell; Paré, Denis

    2015-04-01

    Recent advances in recording and computing hardware have enabled laboratories to record the electrical activity of multiple brain regions simultaneously. Lagging behind these technical advances, however, are the methods needed to rapidly produce microdrives and head-caps that can flexibly accommodate different recording configurations. Indeed, most available designs target single or adjacent brain regions, and, if multiple sites are targeted, specially constructed head-caps are used. Here, we present a novel design style, for both microdrives and head-caps, which takes advantage of three-dimensional printing technology. This design facilitates targeting of multiple brain regions in various configurations. Moreover, the parts are easily fabricated in large quantities, with only minor hand-tooling and finishing required. PMID:25652930

  3. 3D Visualization of Recent Sumatra Earthquake

    NASA Astrophysics Data System (ADS)

    Nayak, Atul; Kilb, Debi

    2005-04-01

    Scientists and visualization experts at the Scripps Institution of Oceanography have created an interactive three-dimensional visualization of the 28 March 2005 magnitude 8.7 earthquake in Sumatra. The visualization shows the earthquake's hypocenter and aftershocks recorded until 29 March 2005, and compares it with the location of the 26 December 2004 magnitude 9 event and the consequent seismicity in that region. The 3D visualization was created using the Fledermaus software developed by Interactive Visualization Systems (http://www.ivs.unb.ca/) and stored as a ``scene'' file. To view this visualization, viewers need to download and install the free viewer program iView3D (http://www.ivs3d.com/products/iview3d).

  4. Lagrangian Sampling of 3-D Air Quality Model Results for Regional Transport Contributions to Sulfate Aerosol Concentrations at Baltimore, MD in Summer of 2004

    EPA Science Inventory

    The Lagrangian method provides estimates of the chemical and physical evolution of air arriving in the daytime boundary layer at Baltimore. Study results indicate a dominant role for regional transport contributions of those days when sulfate air pollution is highest in Baltimor...

  5. Application of Kolomogorov-Zurbenko Filter and the decoupled direct 3D method for the dynamic evaluation of a regional air quality model

    EPA Science Inventory

    Regional air quality models are being used in a policy-setting to estimate the response of air pollutant concentrations to changes in emissions and meteorology. Dynamic evaluation entails examination of a retrospective case(s) to assess whether an air quality model has properly p...

  6. Supernova Remnant in 3-D

    NASA Technical Reports Server (NTRS)

    2009-01-01

    wavelengths. Since the amount of the wavelength shift is related to the speed of motion, one can determine how fast the debris are moving in either direction. Because Cas A is the result of an explosion, the stellar debris is expanding radially outwards from the explosion center. Using simple geometry, the scientists were able to construct a 3-D model using all of this information. A program called 3-D Slicer modified for astronomical use by the Astronomical Medicine Project at Harvard University in Cambridge, Mass. was used to display and manipulate the 3-D model. Commercial software was then used to create the 3-D fly-through.

    The blue filaments defining the blast wave were not mapped using the Doppler effect because they emit a different kind of light synchrotron radiation that does not emit light at discrete wavelengths, but rather in a broad continuum. The blue filaments are only a representation of the actual filaments observed at the blast wave.

    This visualization shows that there are two main components to this supernova remnant: a spherical component in the outer parts of the remnant and a flattened (disk-like) component in the inner region. The spherical component consists of the outer layer of the star that exploded, probably made of helium and carbon. These layers drove a spherical blast wave into the diffuse gas surrounding the star. The flattened component that astronomers were unable to map into 3-D prior to these Spitzer observations consists of the inner layers of the star. It is made from various heavier elements, not all shown in the visualization, such as oxygen, neon, silicon, sulphur, argon and iron.

    High-velocity plumes, or jets, of this material are shooting out from the explosion in the plane of the disk-like component mentioned above. Plumes of silicon appear in the northeast and southwest, while those of iron are seen in the southeast and north. These jets were already known and Doppler velocity measurements have been made for these

  7. 3D bioprinting for engineering complex tissues.

    PubMed

    Mandrycky, Christian; Wang, Zongjie; Kim, Keekyoung; Kim, Deok-Ho

    2016-01-01

    Bioprinting is a 3D fabrication technology used to precisely dispense cell-laden biomaterials for the construction of complex 3D functional living tissues or artificial organs. While still in its early stages, bioprinting strategies have demonstrated their potential use in regenerative medicine to generate a variety of transplantable tissues, including skin, cartilage, and bone. However, current bioprinting approaches still have technical challenges in terms of high-resolution cell deposition, controlled cell distributions, vascularization, and innervation within complex 3D tissues. While no one-size-fits-all approach to bioprinting has emerged, it remains an on-demand, versatile fabrication technique that may address the growing organ shortage as well as provide a high-throughput method for cell patterning at the micrometer scale for broad biomedical engineering applications. In this review, we introduce the basic principles, materials, integration strategies and applications of bioprinting. We also discuss the recent developments, current challenges and future prospects of 3D bioprinting for engineering complex tissues. Combined with recent advances in human pluripotent stem cell technologies, 3D-bioprinted tissue models could serve as an enabling platform for high-throughput predictive drug screening and more effective regenerative therapies. PMID:26724184

  8. New 3D Bolton standards: coregistration of biplane x rays and 3D CT

    NASA Astrophysics Data System (ADS)

    Dean, David; Subramanyan, Krishna; Kim, Eun-Kyung

    1997-04-01

    The Bolton Standards 'normative' cohort (16 males, 16 females) have been invited back to the Bolton-Brush Growth Study Center for new biorthogonal plain film head x-rays and 3D (three dimensional) head CT-scans. A set of 29 3D landmarks were identified on both their biplane head film and 3D CT images. The current 3D CT image is then superimposed onto the landmarks collected from the current biplane head films. Three post-doctoral fellows have collected 37 3D landmarks from the Bolton Standards' 40 - 70 year old biplane head films. These films were captured annually during their growing period (ages 3 - 18). Using 29 of these landmarks the current 3D CT image is next warped (via thin plate spline) to landmarks taken from each participant's 18th year biplane head films, a process that is successively reiterated back to age 3. This process is demonstrated here for one of the Bolton Standards. The outer skull surfaces will be extracted from each warped 3D CT image and an average will be generated for each age/sex group. The resulting longitudinal series of average 'normative' boney skull surface images may be useful for craniofacial patient: diagnosis, treatment planning, stereotactic procedures, and outcomes assessment.

  9. 3D Spectroscopy in Astronomy

    NASA Astrophysics Data System (ADS)

    Mediavilla, Evencio; Arribas, Santiago; Roth, Martin; Cepa-Nogué, Jordi; Sánchez, Francisco

    2011-09-01

    Preface; Acknowledgements; 1. Introductory review and technical approaches Martin M. Roth; 2. Observational procedures and data reduction James E. H. Turner; 3. 3D Spectroscopy instrumentation M. A. Bershady; 4. Analysis of 3D data Pierre Ferruit; 5. Science motivation for IFS and galactic studies F. Eisenhauer; 6. Extragalactic studies and future IFS science Luis Colina; 7. Tutorials: how to handle 3D spectroscopy data Sebastian F. Sánchez, Begona García-Lorenzo and Arlette Pécontal-Rousset.

  10. Understanding long-term strain accommodation in the Longmen Shan region: Insights from 3D thermo-kinematic modelling of thermochronometry data

    NASA Astrophysics Data System (ADS)

    Tian, Yuntao; Vermeesch, Pieter; Carter, Andy

    2015-04-01

    The Longmen Shan marks the steep eastern margin of the Tibetan Plateau and three parallel NW-dipping fault zones define its structural geometry. From foreland (southeast) to hinterland (northwest), the main faults are the Guanxian-Anxian fault, Yingxiu-Beichuan fault and Wenchuan-Maowen fault. The exhumation pattern constrained by 1-dimensional modelling made from a compilation of published and unpublished thermochronometry data shows a strong structural control, with highest amounts of exhumation in the hinterland region, a pattern that is characteristic of out-of-sequence thrusting (Tian et al., 2013, Tectonics, doi:10.1002/tect.20043). 3-dimensional thermo-kinematic modelling of these data suggests that the listric Longmen Shan faults merge into a detachment at a depth of ~20-30 km. The models require a marked decrease in slip-rate along the frontal Yingxiu-Beichuan in the late Miocene, whereas the slip-rate along the hinterland Wenchuan-Maowen fault remained relatively constant. These results reveal the long-term pattern of strain accommodation and have important implications for hazard risk assessment in the region. Further, the out-of-sequence thrusting architecture highlights the importance of upper crustal shortening and extrusion in forming this plateau margin.

  11. 3D Elevation Program—Virtual USA in 3D

    USGS Publications Warehouse

    Lukas, Vicki; Stoker, J.M.

    2016-01-01

    The U.S. Geological Survey (USGS) 3D Elevation Program (3DEP) uses a laser system called ‘lidar’ (light detection and ranging) to create a virtual reality map of the Nation that is very accurate. 3D maps have many uses with new uses being discovered all the time.  

  12. Supernova Remnant in 3-D

    NASA Technical Reports Server (NTRS)

    2009-01-01

    wavelengths. Since the amount of the wavelength shift is related to the speed of motion, one can determine how fast the debris are moving in either direction. Because Cas A is the result of an explosion, the stellar debris is expanding radially outwards from the explosion center. Using simple geometry, the scientists were able to construct a 3-D model using all of this information. A program called 3-D Slicer modified for astronomical use by the Astronomical Medicine Project at Harvard University in Cambridge, Mass. was used to display and manipulate the 3-D model. Commercial software was then used to create the 3-D fly-through.

    The blue filaments defining the blast wave were not mapped using the Doppler effect because they emit a different kind of light synchrotron radiation that does not emit light at discrete wavelengths, but rather in a broad continuum. The blue filaments are only a representation of the actual filaments observed at the blast wave.

    This visualization shows that there are two main components to this supernova remnant: a spherical component in the outer parts of the remnant and a flattened (disk-like) component in the inner region. The spherical component consists of the outer layer of the star that exploded, probably made of helium and carbon. These layers drove a spherical blast wave into the diffuse gas surrounding the star. The flattened component that astronomers were unable to map into 3-D prior to these Spitzer observations consists of the inner layers of the star. It is made from various heavier elements, not all shown in the visualization, such as oxygen, neon, silicon, sulphur, argon and iron.

    High-velocity plumes, or jets, of this material are shooting out from the explosion in the plane of the disk-like component mentioned above. Plumes of silicon appear in the northeast and southwest, while those of iron are seen in the southeast and north. These jets were already known and Doppler velocity measurements have been made for these

  13. A 3D Geometry Model Search Engine to Support Learning

    ERIC Educational Resources Information Center

    Tam, Gary K. L.; Lau, Rynson W. H.; Zhao, Jianmin

    2009-01-01

    Due to the popularity of 3D graphics in animation and games, usage of 3D geometry deformable models increases dramatically. Despite their growing importance, these models are difficult and time consuming to build. A distance learning system for the construction of these models could greatly facilitate students to learn and practice at different…

  14. Concurrent 3-D motion segmentation and 3-D interpretation of temporal sequences of monocular images.

    PubMed

    Sekkati, Hicham; Mitiche, Amar

    2006-03-01

    The purpose of this study is to investigate a variational method for joint multiregion three-dimensional (3-D) motion segmentation and 3-D interpretation of temporal sequences of monocular images. Interpretation consists of dense recovery of 3-D structure and motion from the image sequence spatiotemporal variations due to short-range image motion. The method is direct insomuch as it does not require prior computation of image motion. It allows movement of both viewing system and multiple independently moving objects. The problem is formulated following a variational statement with a functional containing three terms. One term measures the conformity of the interpretation within each region of 3-D motion segmentation to the image sequence spatiotemporal variations. The second term is of regularization of depth. The assumption that environmental objects are rigid accounts automatically for the regularity of 3-D motion within each region of segmentation. The third and last term is for the regularity of segmentation boundaries. Minimization of the functional follows the corresponding Euler-Lagrange equations. This results in iterated concurrent computation of 3-D motion segmentation by curve evolution, depth by gradient descent, and 3-D motion by least squares within each region of segmentation. Curve evolution is implemented via level sets for topology independence and numerical stability. This algorithm and its implementation are verified on synthetic and real image sequences. Viewers presented with anaglyphs of stereoscopic images constructed from the algorithm's output reported a strong perception of depth. PMID:16519351

  15. From the Ground Up: Growing Entrepreneurship in the North Central Region. RRD 191

    ERIC Educational Resources Information Center

    Emery, Mary

    2008-01-01

    More than 300 people in the North Central region added their voices to a discussion on the importance of entrepreneurship to rural community vitality, often traveling long distances to attend one of 11 listening sessions held throughout the region. Among those attending were local leaders, service providers, entrepreneurs, and educators. The…

  16. 3D EIT image reconstruction with GREIT.

    PubMed

    Grychtol, Bartłomiej; Müller, Beat; Adler, Andy

    2016-06-01

    Most applications of thoracic EIT use a single plane of electrodes on the chest from which a transverse image 'slice' is calculated. However, interpretation of EIT images is made difficult by the large region above and below the electrode plane to which EIT is sensitive. Volumetric EIT images using two (or more) electrode planes should help compensate, but are little used currently. The Graz consensus reconstruction algorithm for EIT (GREIT) has become popular in lung EIT. One shortcoming of the original formulation of GREIT is its restriction to reconstruction onto a 2D planar image. We present an extension of the GREIT algorithm to 3D and develop open-source tools to evaluate its performance as a function of the choice of stimulation and measurement pattern. Results show 3D GREIT using two electrode layers has significantly more uniform sensitivity profiles through the chest region. Overall, the advantages of 3D EIT are compelling. PMID:27203184

  17. Comparative analysis of antioxidant activity and functional components of the ethanol extract of lotus (Nelumbo nucifera) from various growing regions.

    PubMed

    Zhao, Xu; Shen, Jian; Chang, Kyung Ja; Kim, Sung Hoon

    2014-07-01

    The variations in antioxidant activity and concentration of functional components in the ethanol extracts of lotus seeds and rhizomes based on the growing region and dryness were investigated. Free radical scavenging activity, total phenolic and flavonoid content, and concentration of several specific flavonoids and alkaloids in the ethanol extracts of lotus were measured. Antioxidant activity and its correlative total phenolic content varied characteristically depending on the growing region and dryness. High-perfomance liquid chromatography analysis showed that the ethanol extracts of lotus seeds from Vietnam (Ho Chi Minh City), raw rhizomes from Korea (Siheung), and dried rhizomes from Japan (Nigata) had the greatest specific flavonoid content. The ethanol extracts of seeds from China (Hubei), raw rhizomes from Japan (Nigata), and dried rhizomes from Korea (Siheung) had the greatest specific alkaloid content. Astragaline, rutin, isoquercetin, nuciferine, dauricine, isoliensinine, and neferine were identified in lotus rhizomes for the first time in this study. PMID:24932940

  18. MEDCAN-GRO: Medical Capacity for African Nations - Growing Regional Operability A Case Study in Special Operations Forces Capacity Building.

    PubMed

    Givens, Melissa L; Verlo, April

    2015-01-01

    Medical Capacity for African Nations-Growing Regional Operability (MEDCAN-GRO) is a framework for addressing healthcare engagements that are intended to provide sustainable capacity building with partner nations. MEDCAN-GRO provides SOF units with a model that can be scaled to partner nation needs and aligned with the goals of the TSOC in an effort to enhance partner nation security. PMID:25770807

  19. Simulating gas and particulate pollution over the Middle East and the state of Qatar using a 3-D regional air quality modeling system

    NASA Astrophysics Data System (ADS)

    Fountoukis, Christos; Gladich, Ivan; Ayoub, Mohammed; Kais, Sabre; Ackermann, Luis; Skillern, Adam

    2016-04-01

    The rapid urbanization, industrialization and economic expansion in the Middle East have led to increased levels of atmospheric pollution with important implications for human health and climate. We applied the online-coupled meteorological and chemical transport Weather Research and Forecasting/Chemistry (WRF-Chem) model over the Middle Eastern domain, to simulate the concentration of gas and aerosols with a special focus over the state of Qatar. WRF-Chem was set to simulate pollutant concentrations along with the meteorology-chemistry interactions through the related direct, indirect and semi-direct feedback mechanisms. A triple-nested domain configuration was used with a high grid resolution (1x1 km2) over the region of Qatar. Model predictions are evaluated against intensive measurements of meteorological parameters (temperature, relative humidity and wind speed) as well as ozone and particulate matter taken from various measurement stations throughout Doha, Qatar during summer 2015. The ability of the model to capture the temporal and spatial variability of the observations is assessed and possible reasons for the model bias are explored through sensitivity tests. Emissions of both fine and coarse mode particles from construction activities in large urban Middle Eastern environments comprise a major pollution source that is unaccounted for in emission inventories used so far in large scale models for this part of the world.

  20. A 3-D evaluation of the MACC reanalysis dust product over the greater European region using CALIOP/CALIPSO satellite observations

    NASA Astrophysics Data System (ADS)

    Georgoulias, Aristeidis K.; Tsikerdekis, Athanasios; Amiridis, Vassilis; Marinou, Eleni; Benedetti, Angela; Zanis, Prodromos; Kourtidis, Konstantinos

    2016-04-01

    Significant amounts of dust are being transferred on an annual basis over the Mediterranean Basin and continental Europe from Northern Africa (Sahara Desert) and Middle East (Arabian Peninsula) as well as from other local sources. Dust affects a number of processes in the atmosphere modulating weather and climate also having an impact on human health and the economy. Therefore, the ability of simulating adequately the amount and optical properties of dust is essential. This work focuses on the evaluation of the MACC reanalysis dust product over the regions mentioned above. The evaluation procedure is based on pure dust satellite retrievals from CALIOP/CALIPSO that cover the period 2007-2012. The CALIOP/CALIPSO data utilized here come from an optimized retrieval scheme that was originally developed within the framework of the LIVAS (Lidar Climatology of Vertical Aerosol Structure for Space-Based LIDAR Simulation Studies) project. CALIOP/CALIPSO dust extinction coefficients and dust optical depth patterns at 532 nm are used for the validation of MACC natural aerosol extinction coefficients and dust optical depth patterns at 550 nm. Overall, it is shown in this work that space-based lidars may play a major role in the improvement of the MACC aerosol product. This research has been financed under the FP7 Programme MarcoPolo (Grand Number 606953, Theme SPA.2013.3.2-01).

  1. Analysis of 3d complex structure and heterogeneity effects on formation and propagation of regional phases in Eurasia. Final report, 15 August 1992-30 September 1994

    SciTech Connect

    Lay, T.; Wu, R.S.

    1994-12-13

    This document is the final report for this grant to develop new three-dimensional wave propagation techniques for high frequency waves in heterogeneous media. The report is divided into four sections, each being a published paper sponsored by this grant. In the first section we formulate a one-way wide-angle elastic wave propagation method for arbitrarily heterogeneous media in both the space and wavenumber domains using elastic Rayleigh integrals and local elastic Born scattering theory. In the second section this complex phase screen method is compared with fourth-order finite differences and exact eigenfunction expansion calculations for two-dimensional inhomogeneous media to assess the accuracy of the one-way propagation algorithm. In the third section, an observational study of continental margin structure influence on Lg propagation is presented, using data from the former Soviet stations for nuclear explosions at Novaya Zemlya. We find that bathymetric features can be correlated with energy levels of Lg, suggesting that waveguide structure influences regional phase energy partitioning. This idea is pursued in the fourth section, using Eurasian earthquake and nuclear explosion data along with information about the crustal structure in Eurasia. We develop empirical relations that reduce the scatter in the P/Lg discriminant at low frequency.

  2. Rapidly changing climatic conditions for wine grape growing in the Okanagan Valley region of British Columbia, Canada.

    PubMed

    Rayne, Sierra; Forest, Kaya

    2016-06-15

    A statistical analysis was conducted on long-term climate records for sites bordering Okanagan Lake in the Okanagan Valley viticultural region of British Columbia, Canada. Average wine grape growing season temperatures are increasing rapidly in the area over the post-1980 period at rates upwards of 7.0±1.3°C/century. Similar increases in the average dormant season temperature are evident. These temperature changes are likely some of the most extreme observed among the world's wine producing areas during the past few decades. Growing degree day base 10°C (GDD10) has increased by nearly 50% at some locations since the 1970s, resulting in major impacts on the corresponding climate classification for viticulture. If current climate trends continue, the southern and central portions of the region will likely enter Winkler region II within the next few decades, placing them in the same category as well-established warmer wine regions from France, Spain, Italy, and Australia. The large dormant season temperature increases over the last several decades have resulted in the area no longer being a cold season outlier when compared to most other cool-climate viticultural areas. Based on average growing season temperatures, the southern end of Okanagan Lake has moved out of the cool-climate viticultural classification and into the intermediate zone, while the central and northern regions are now at the cool/intermediate viticulture interface, similar to the historical positions of the Rhine Valley in Germany, northern Oregon in the United States, and the Loire Valley, Burgundy-Cote, Burgundy-Beaujolais, and Champagne appelations of France. The corresponding suitable grape species for the area have evolved into warmer region varietals during this time frame, having substantial economic impacts on producers. Increased temperatures are also expected to bring greater threats from agricultural pests, notably Pierce's disease from the bacterium Xylella fastidiosa. PMID:26971218

  3. Modular 3-D Transport model

    EPA Science Inventory

    MT3D was first developed by Chunmiao Zheng in 1990 at S.S. Papadopulos & Associates, Inc. with partial support from the U.S. Environmental Protection Agency (USEPA). Starting in 1990, MT3D was released as a pubic domain code from the USEPA. Commercial versions with enhanced capab...

  4. Market study: 3-D eyetracker

    NASA Technical Reports Server (NTRS)

    1977-01-01

    A market study of a proposed version of a 3-D eyetracker for initial use at NASA's Ames Research Center was made. The commercialization potential of a simplified, less expensive 3-D eyetracker was ascertained. Primary focus on present and potential users of eyetrackers, as well as present and potential manufacturers has provided an effective means of analyzing the prospects for commercialization.

  5. LLNL-Earth3D

    2013-10-01

    Earth3D is a computer code designed to allow fast calculation of seismic rays and travel times through a 3D model of the Earth. LLNL is using this for earthquake location and global tomography efforts and such codes are of great interest to the Earth Science community.

  6. [3-D ultrasound in gastroenterology].

    PubMed

    Zoller, W G; Liess, H

    1994-06-01

    Three-dimensional (3D) sonography represents a development of noninvasive diagnostic imaging by real-time two-dimensional (2D) sonography. The use of transparent rotating scans, comparable to a block of glass, generates a 3D effect. The objective of the present study was to optimate 3D presentation of abdominal findings. Additional investigations were made with a new volumetric program to determine the volume of selected findings of the liver. The results were compared with the estimated volumes of 2D sonography and 2D computer tomography (CT). For the processing of 3D images, typical parameter constellations were found for the different findings, which facilitated processing of 3D images. In more than 75% of the cases examined we found an optimal 3D presentation of sonographic findings with respect to the evaluation criteria developed by us for the 3D imaging of processed data. Great differences were found for the estimated volumes of the findings of the liver concerning the three different techniques applied. 3D ultrasound represents a valuable method to judge morphological appearance in abdominal findings. The possibility of volumetric measurements enlarges its potential diagnostic significance. Further clinical investigations are necessary to find out if definite differentiation between benign and malign findings is possible. PMID:7919882

  7. 3D World Building System

    SciTech Connect

    2013-10-30

    This video provides an overview of the Sandia National Laboratories developed 3-D World Model Building capability that provides users with an immersive, texture rich 3-D model of their environment in minutes using a laptop and color and depth camera.

  8. 3D World Building System

    ScienceCinema

    None

    2014-02-26

    This video provides an overview of the Sandia National Laboratories developed 3-D World Model Building capability that provides users with an immersive, texture rich 3-D model of their environment in minutes using a laptop and color and depth camera.

  9. Efficient segmentation of 3D fluoroscopic datasets from mobile C-arm

    NASA Astrophysics Data System (ADS)

    Styner, Martin A.; Talib, Haydar; Singh, Digvijay; Nolte, Lutz-Peter

    2004-05-01

    The emerging mobile fluoroscopic 3D technology linked with a navigation system combines the advantages of CT-based and C-arm-based navigation. The intra-operative, automatic segmentation of 3D fluoroscopy datasets enables the combined visualization of surgical instruments and anatomical structures for enhanced planning, surgical eye-navigation and landmark digitization. We performed a thorough evaluation of several segmentation algorithms using a large set of data from different anatomical regions and man-made phantom objects. The analyzed segmentation methods include automatic thresholding, morphological operations, an adapted region growing method and an implicit 3D geodesic snake method. In regard to computational efficiency, all methods performed within acceptable limits on a standard Desktop PC (30sec-5min). In general, the best results were obtained with datasets from long bones, followed by extremities. The segmentations of spine, pelvis and shoulder datasets were generally of poorer quality. As expected, the threshold-based methods produced the worst results. The combined thresholding and morphological operations methods were considered appropriate for a smaller set of clean images. The region growing method performed generally much better in regard to computational efficiency and segmentation correctness, especially for datasets of joints, and lumbar and cervical spine regions. The less efficient implicit snake method was able to additionally remove wrongly segmented skin tissue regions. This study presents a step towards efficient intra-operative segmentation of 3D fluoroscopy datasets, but there is room for improvement. Next, we plan to study model-based approaches for datasets from the knee and hip joint region, which would be thenceforth applied to all anatomical regions in our continuing development of an ideal segmentation procedure for 3D fluoroscopic images.

  10. Euro3D Science Conference

    NASA Astrophysics Data System (ADS)

    Walsh, J. R.

    2004-02-01

    The Euro3D RTN is an EU funded Research Training Network to foster the exploitation of 3D spectroscopy in Europe. 3D spectroscopy is a general term for spectroscopy of an area of the sky and derives its name from its two spatial + one spectral dimensions. There are an increasing number of instruments which use integral field devices to achieve spectroscopy of an area of the sky, either using lens arrays, optical fibres or image slicers, to pack spectra of multiple pixels on the sky (``spaxels'') onto a 2D detector. On account of the large volume of data and the special methods required to reduce and analyse 3D data, there are only a few centres of expertise and these are mostly involved with instrument developments. There is a perceived lack of expertise in 3D spectroscopy spread though the astronomical community and its use in the armoury of the observational astronomer is viewed as being highly specialised. For precisely this reason the Euro3D RTN was proposed to train young researchers in this area and develop user tools to widen the experience with this particular type of data in Europe. The Euro3D RTN is coordinated by Martin M. Roth (Astrophysikalisches Institut Potsdam) and has been running since July 2002. The first Euro3D science conference was held in Cambridge, UK from 22 to 23 May 2003. The main emphasis of the conference was, in keeping with the RTN, to expose the work of the young post-docs who are funded by the RTN. In addition the team members from the eleven European institutes involved in Euro3D also presented instrumental and observational developments. The conference was organized by Andy Bunker and held at the Institute of Astronomy. There were over thirty participants and 26 talks covered the whole range of application of 3D techniques. The science ranged from Galactic planetary nebulae and globular clusters to kinematics of nearby galaxies out to objects at high redshift. Several talks were devoted to reporting recent observations with newly

  11. Inversion for rupture properties based upon 3-D directivity effect and application to deep earthquakes in the Sea of Okhotsk region

    NASA Astrophysics Data System (ADS)

    Park, Sunyoung; Ishii, Miaki

    2015-11-01

    Rupture properties, such as rupture direction, length, propagation speed and source duration, provide important insights into earthquake mechanisms. One approach to estimate these properties is to investigate the body-wave duration that depends upon the relative location of the station with respect to the rupture direction. Under the assumption that the propagation is unilateral, the duration can be expressed as a function of the dip and azimuth of the rupture. Examination of duration measurements with respect to both the take-off angle and the azimuth is crucial to obtain robust estimates of rupture parameters, especially for nearly vertical rupture propagation. Moreover, limited data coverage, such as using only teleseismic data, can bias the source duration estimate for dipping ruptures, and this bias can map into estimates of other source properties such as rupture extent and rupture speed. Based upon this framework, we introduce an inversion scheme that uses the duration measurements to obtain four parameters: the source duration, a measure of the rupture extent and speed, and dip and azimuth of the rupture propagation. The method is applied to two deep-focus events in the Sea of Okhotsk region, an Mw 7.7 event that occurred on 2012 August 14 and an Mw 8.3 event from 2013 May 24. The source durations are 26 ± 1 and 37 ± 1 s, and rupture speeds are 49 ± 4 per cent and 26 ± 3 per cent of shear wave speed for the Mw 7.7 and 8.3 events, respectively. The azimuths of the two ruptures are parallel to the trench, but are in opposite directions. The dips of the Mw 7.7 and 8.3 events are constrained to be 48° ± 8° downdip and 19° ± 8° updip, respectively. The fit to the data is significantly poorer for the Mw 8.3 event than the Mw 7.7 event, suggesting that the unilateral rupture may not be a good assumption. The analysis is expanded into a multi-episode model, and a secondary episode is determined for the Mw 8.3 event in the southeast direction. The two

  12. PLOT3D user's manual

    NASA Technical Reports Server (NTRS)

    Walatka, Pamela P.; Buning, Pieter G.; Pierce, Larry; Elson, Patricia A.

    1990-01-01

    PLOT3D is a computer graphics program designed to visualize the grids and solutions of computational fluid dynamics. Seventy-four functions are available. Versions are available for many systems. PLOT3D can handle multiple grids with a million or more grid points, and can produce varieties of model renderings, such as wireframe or flat shaded. Output from PLOT3D can be used in animation programs. The first part of this manual is a tutorial that takes the reader, keystroke by keystroke, through a PLOT3D session. The second part of the manual contains reference chapters, including the helpfile, data file formats, advice on changing PLOT3D, and sample command files.

  13. 3D printing in dentistry.

    PubMed

    Dawood, A; Marti Marti, B; Sauret-Jackson, V; Darwood, A

    2015-12-01

    3D printing has been hailed as a disruptive technology which will change manufacturing. Used in aerospace, defence, art and design, 3D printing is becoming a subject of great interest in surgery. The technology has a particular resonance with dentistry, and with advances in 3D imaging and modelling technologies such as cone beam computed tomography and intraoral scanning, and with the relatively long history of the use of CAD CAM technologies in dentistry, it will become of increasing importance. Uses of 3D printing include the production of drill guides for dental implants, the production of physical models for prosthodontics, orthodontics and surgery, the manufacture of dental, craniomaxillofacial and orthopaedic implants, and the fabrication of copings and frameworks for implant and dental restorations. This paper reviews the types of 3D printing technologies available and their various applications in dentistry and in maxillofacial surgery. PMID:26657435

  14. 3D-GNOME: an integrated web service for structural modeling of the 3D genome

    PubMed Central

    Szalaj, Przemyslaw; Michalski, Paul J.; Wróblewski, Przemysław; Tang, Zhonghui; Kadlof, Michal; Mazzocco, Giovanni; Ruan, Yijun; Plewczynski, Dariusz

    2016-01-01

    Recent advances in high-throughput chromosome conformation capture (3C) technology, such as Hi-C and ChIA-PET, have demonstrated the importance of 3D genome organization in development, cell differentiation and transcriptional regulation. There is now a widespread need for computational tools to generate and analyze 3D structural models from 3C data. Here we introduce our 3D GeNOme Modeling Engine (3D-GNOME), a web service which generates 3D structures from 3C data and provides tools to visually inspect and annotate the resulting structures, in addition to a variety of statistical plots and heatmaps which characterize the selected genomic region. Users submit a bedpe (paired-end BED format) file containing the locations and strengths of long range contact points, and 3D-GNOME simulates the structure and provides a convenient user interface for further analysis. Alternatively, a user may generate structures using published ChIA-PET data for the GM12878 cell line by simply specifying a genomic region of interest. 3D-GNOME is freely available at http://3dgnome.cent.uw.edu.pl/. PMID:27185892

  15. 3D-GNOME: an integrated web service for structural modeling of the 3D genome.

    PubMed

    Szalaj, Przemyslaw; Michalski, Paul J; Wróblewski, Przemysław; Tang, Zhonghui; Kadlof, Michal; Mazzocco, Giovanni; Ruan, Yijun; Plewczynski, Dariusz

    2016-07-01

    Recent advances in high-throughput chromosome conformation capture (3C) technology, such as Hi-C and ChIA-PET, have demonstrated the importance of 3D genome organization in development, cell differentiation and transcriptional regulation. There is now a widespread need for computational tools to generate and analyze 3D structural models from 3C data. Here we introduce our 3D GeNOme Modeling Engine (3D-GNOME), a web service which generates 3D structures from 3C data and provides tools to visually inspect and annotate the resulting structures, in addition to a variety of statistical plots and heatmaps which characterize the selected genomic region. Users submit a bedpe (paired-end BED format) file containing the locations and strengths of long range contact points, and 3D-GNOME simulates the structure and provides a convenient user interface for further analysis. Alternatively, a user may generate structures using published ChIA-PET data for the GM12878 cell line by simply specifying a genomic region of interest. 3D-GNOME is freely available at http://3dgnome.cent.uw.edu.pl/. PMID:27185892

  16. PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITH TURB3D)

    NASA Technical Reports Server (NTRS)

    Buning, P.

    1994-01-01

    PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into

  17. PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITHOUT TURB3D)

    NASA Technical Reports Server (NTRS)

    Buning, P.

    1994-01-01

    PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into

  18. CASTLE3D - A Computer Aided System for Labelling Archaeological Excavations in 3D

    NASA Astrophysics Data System (ADS)

    Houshiar, H.; Borrmann, D.; Elseberg, J.; Nüchter, A.; Näth, F.; Winkler, S.

    2015-08-01

    Documentation of archaeological excavation sites with conventional methods and tools such as hand drawings, measuring tape and archaeological notes is time consuming. This process is prone to human errors and the quality of the documentation depends on the qualification of the archaeologist on site. Use of modern technology and methods in 3D surveying and 3D robotics facilitate and improve this process. Computer-aided systems and databases improve the documentation quality and increase the speed of data acquisition. 3D laser scanning is the state of the art in modelling archaeological excavation sites, historical sites and even entire cities or landscapes. Modern laser scanners are capable of data acquisition of up to 1 million points per second. This provides a very detailed 3D point cloud of the environment. 3D point clouds and 3D models of an excavation site provide a better representation of the environment for the archaeologist and for documentation. The point cloud can be used both for further studies on the excavation and for the presentation of results. This paper introduces a Computer aided system for labelling archaeological excavations in 3D (CASTLE3D). Consisting of a set of tools for recording and georeferencing the 3D data from an excavation site, CASTLE3D is a novel documentation approach in industrial archaeology. It provides a 2D and 3D visualisation of the data and an easy-to-use interface that enables the archaeologist to select regions of interest and to interact with the data in both representations. The 2D visualisation and a 3D orthogonal view of the data provide cuts of the environment that resemble the traditional hand drawings. The 3D perspective view gives a realistic view of the environment. CASTLE3D is designed as an easy-to-use on-site semantic mapping tool for archaeologists. Each project contains a predefined set of semantic information that can be used to label findings in the data. Multiple regions of interest can be joined under

  19. Southern Slippage: Growing School Segregation in the Most Desegregated Region of the Country

    ERIC Educational Resources Information Center

    Siegel-Hawley, Genevieve; Frankenberg, Erica

    2012-01-01

    The South remains the most desegregated region in the country for black students, but along every measure of segregation and at each level of geography, gains made during the desegregation era are slipping away at a steady pace. This report shows that the segregation of Southern black students has been progressively increasing since judicial…

  20. Growing PreK-12 Educators through a Partnership of School Districts and a Regional University

    ERIC Educational Resources Information Center

    Russell, Brenda A.; Kirk, Jeffrey L.; Eddings, Bobbie J.; Farris, L. Ann

    2013-01-01

    In central Texas and regions across the country, community leaders are calling for university-community engagement, including development of structures for community-based research and service learning. Including the community in decision making regarding continuing professional education serves as a link between universities such as Texas A&M…

  1. The Growing Trend of Moderate Preterm Births: An Ecological Study in One Region of Brazil

    PubMed Central

    Melo, Emiliana Cristina; Falavina, Larissa Pereira

    2015-01-01

    Background Preterm birth is a serious public health problem, as it is linked to high rates of neonatal and child morbidity and mortality, with Brazil listed among the countries with the ten highest numbers of premature births. Nonetheless, knowledge is scarce regarding prematurity and associated factors in mid-sized cities. The objective of this study was to analyze the trend of preterm births and associated factors in a municipality located in the state of Paraná, Brazil. Methods This was an ecological time series study of births recorded into the Live Birth Information System for residents of Maringá, Paraná, Brazil, between 2000 and 2013. The polynomial regression model was used for trend analysis of preterm birth, characteristics of the mother, gestation and delivery, and newborn. The association with preterm birth was analyzed using odds ratio (OR). Results A total of 61,634 live births were analyzed, of which 5,632 were preterm births. Prematurity increased from 7.9% in 2000 to 11.2% in 2013 –an average increase of 0.54% per year (r2 = 0.93)–with a growing share of moderate preterm births (32 to <37 weeks), which rose from 7.0% in 2000 to 9.7% in 2013. Between 2011 and 2013, multiple pregnancy (OR = 16.64; CI = 13.24–20.92), inadequate number of prenatal visits (OR = 2.81; CI = 2.51–3.15), Apgar score below 7 at 1 (OR = 4.07; CI = 3.55–4.67) and 5 minutes (OR = 10.88; CI = 7.71–15.36), low birth weight (OR = 38.75; CI = 33.72–44.55) and congenital malformations (OR = 3.18; CI = 2.14–4.74) were associated with preterm birth. A growing trend was observed for multiple pregnancies, with an average annual increase of 0.32% (r2 = 0.90), as well as for C-section birth (2.38% yearly increase). Of all newborn characteristics, Apgar score below 7 at 5 minutes (-0.19% per year) and low birth weight (-1.43%) decreased, whereas congenital malformations rose (0.20% per year). Conclusions Efforts are required to prevent premature delivery, particularly

  2. Automatic 2D-to-3D image conversion using 3D examples from the internet

    NASA Astrophysics Data System (ADS)

    Konrad, J.; Brown, G.; Wang, M.; Ishwar, P.; Wu, C.; Mukherjee, D.

    2012-03-01

    repository. While far from perfect, the presented results demonstrate that on-line repositories of 3D content can be used for effective 2D-to-3D image conversion. With the continuously increasing amount of 3D data on-line and with the rapidly growing computing power in the cloud, the proposed framework seems a promising alternative to operator-assisted 2D-to-3D conversion.

  3. Analysis of crude protein and allergen abundance in peanuts (Arachis hypogaea cv. Walter) from three growing regions in Australia.

    PubMed

    Walczyk, Nicole E; Smith, Penelope M C; Tovey, Euan; Wright, Graeme C; Fleischfresser, Dayle B; Roberts, Thomas H

    2013-04-17

    The effects of plant growth conditions on concentrations of proteins, including allergens, in peanut ( Arachis hypogaea L.) kernels are largely unknown. Peanuts (cv. Walter) were grown at five sites (Taabinga, Redvale, Childers, Bundaberg, and Kairi) covering three commercial growing regions in Queensland, Australia. Differences in temperature, rainfall, and solar radiation during the growing season were evaluated. Kernel yield varied from 2.3 t/ha (Kairi) to 3.9 t/ha (Childers), probably due to differences in solar radiation. Crude protein appeared to vary only between Kairi and Childers, whereas Ara h 1 and 2 concentrations were similar in all locations. 2D-DIGE revealed significant differences in spot volumes for only two minor protein spots from peanuts grown in the five locations. Western blotting using peanut-allergic serum revealed no qualitative differences in recognition of antigens. It was concluded that peanuts grown in different growing regions in Queensland, Australia, had similar protein compositions and therefore were unlikely to show differences in allergenicity. PMID:23495786

  4. Bioprinting of 3D hydrogels.

    PubMed

    Stanton, M M; Samitier, J; Sánchez, S

    2015-08-01

    Three-dimensional (3D) bioprinting has recently emerged as an extension of 3D material printing, by using biocompatible or cellular components to build structures in an additive, layer-by-layer methodology for encapsulation and culture of cells. These 3D systems allow for cell culture in a suspension for formation of highly organized tissue or controlled spatial orientation of cell environments. The in vitro 3D cellular environments simulate the complexity of an in vivo environment and natural extracellular matrices (ECM). This paper will focus on bioprinting utilizing hydrogels as 3D scaffolds. Hydrogels are advantageous for cell culture as they are highly permeable to cell culture media, nutrients, and waste products generated during metabolic cell processes. They have the ability to be fabricated in customized shapes with various material properties with dimensions at the micron scale. 3D hydrogels are a reliable method for biocompatible 3D printing and have applications in tissue engineering, drug screening, and organ on a chip models. PMID:26066320

  5. Unassisted 3D camera calibration

    NASA Astrophysics Data System (ADS)

    Atanassov, Kalin; Ramachandra, Vikas; Nash, James; Goma, Sergio R.

    2012-03-01

    With the rapid growth of 3D technology, 3D image capture has become a critical part of the 3D feature set on mobile phones. 3D image quality is affected by the scene geometry as well as on-the-device processing. An automatic 3D system usually assumes known camera poses accomplished by factory calibration using a special chart. In real life settings, pose parameters estimated by factory calibration can be negatively impacted by movements of the lens barrel due to shaking, focusing, or camera drop. If any of these factors displaces the optical axes of either or both cameras, vertical disparity might exceed the maximum tolerable margin and the 3D user may experience eye strain or headaches. To make 3D capture more practical, one needs to consider unassisted (on arbitrary scenes) calibration. In this paper, we propose an algorithm that relies on detection and matching of keypoints between left and right images. Frames containing erroneous matches, along with frames with insufficiently rich keypoint constellations, are detected and discarded. Roll, pitch yaw , and scale differences between left and right frames are then estimated. The algorithm performance is evaluated in terms of the remaining vertical disparity as compared to the maximum tolerable vertical disparity.

  6. Arena3D: visualization of biological networks in 3D

    PubMed Central

    Pavlopoulos, Georgios A; O'Donoghue, Seán I; Satagopam, Venkata P; Soldatos, Theodoros G; Pafilis, Evangelos; Schneider, Reinhard

    2008-01-01

    Background Complexity is a key problem when visualizing biological networks; as the number of entities increases, most graphical views become incomprehensible. Our goal is to enable many thousands of entities to be visualized meaningfully and with high performance. Results We present a new visualization tool, Arena3D, which introduces a new concept of staggered layers in 3D space. Related data – such as proteins, chemicals, or pathways – can be grouped onto separate layers and arranged via layout algorithms, such as Fruchterman-Reingold, distance geometry, and a novel hierarchical layout. Data on a layer can be clustered via k-means, affinity propagation, Markov clustering, neighbor joining, tree clustering, or UPGMA ('unweighted pair-group method with arithmetic mean'). A simple input format defines the name and URL for each node, and defines connections or similarity scores between pairs of nodes. The use of Arena3D is illustrated with datasets related to Huntington's disease. Conclusion Arena3D is a user friendly visualization tool that is able to visualize biological or any other network in 3D space. It is free for academic use and runs on any platform. It can be downloaded or lunched directly from . Java3D library and Java 1.5 need to be pre-installed for the software to run. PMID:19040715

  7. Empirical evidence of direct impact of extreme temperatures on wheat yield in major wheat growing region of India.

    NASA Astrophysics Data System (ADS)

    Murari, K. K.; Mahato, S.; Jayaraman, T.

    2014-12-01

    Exposure to extreme temperatures during the grain filling stage of winter wheat may lead to reduction in the yield. Over the last decade, there has been an increasing trend of exposure to extreme temperature conditions, particularly during crop growing season. The Indo Gangetic plain (IGP) is a particular concern since an optimal temperature for wheat production already exists in the region. This is also a major concern for global wheat production since the region accounts for about 15% of the global wheat production. Previous studies conducted in this region have found a strong impact of extreme temperatures causing an early occurrence of senescence, defined as the last developmental stage of the plant. The early occurrence of senescence period induces shortening of growing season length, which is a critical grain filling stage. However, the direct effect of extreme temperatures on the yield data has not yet been looked at, which reflects the impact of extreme temperature at different growth stages including anthesis (flowering) and the grain-filling stage. Here in this study, we explore the relationship of extreme heat conditions on the yield using fixed-effect panel data model for the districts in the IGP region. The first result indicates approximately 16% reduction in wheat yield with 1˚C rise in mean growing season temperature. There is a significant negative trend between the yield and the fourth quartile of extreme temperature (>34˚C) days. Furthermore, we establish a scope of existence of a nonlinear relationship between temperature and yield, which needs to be further examined.

  8. Fdf in US3D

    NASA Astrophysics Data System (ADS)

    Otis, Collin; Ferrero, Pietro; Candler, Graham; Givi, Peyman

    2013-11-01

    The scalar filtered mass density function (SFMDF) methodology is implemented into the computer code US3D. This is an unstructured Eulerian finite volume hydrodynamic solver and has proven very effective for simulation of compressible turbulent flows. The resulting SFMDF-US3D code is employed for large eddy simulation (LES) on unstructured meshes. Simulations are conducted of subsonic and supersonic flows under non-reacting and reacting conditions. The consistency and the accuracy of the simulated results are assessed along with appraisal of the overall performance of the methodology. The SFMDF-US3D is now capable of simulating high speed flows in complex configurations.

  9. Particle Acceleration in 3D Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Dahlin, J.; Drake, J. F.; Swisdak, M.

    2015-12-01

    Magnetic reconnection is an important driver of energetic particles in phenomena such as magnetospheric storms and solar flares. Using kinetic particle-in-cell (PIC) simulations, we show that the stochastic magnetic field structure which develops during 3D reconnection plays a vital role in particle acceleration and transport. In a 2D system, electrons are trapped in magnetic islands which limits their energy gain. In a 3D system, however, the stochastic magnetic field enables the energetic electrons to access volume-filling acceleration regions and therefore gain energy much more efficiently than in the 2D system. We also examine the relative roles of two important acceleration drivers: parallel electric fields and a Fermi mechanism associated with reflection of charged particles from contracting field lines. We find that parallel electric fields are most important for accelerating low energy particles, whereas Fermi reflection dominates energetic particle production. We also find that proton energization is reduced in the 3D system.

  10. Feature-Based Quality Evaluation of 3d Point Clouds - Study of the Performance of 3d Registration Algorithms

    NASA Astrophysics Data System (ADS)

    Ridene, T.; Goulette, F.; Chendeb, S.

    2013-08-01

    The production of realistic 3D map databases is continuously growing. We studied an approach of 3D mapping database producing based on the fusion of heterogeneous 3D data. In this term, a rigid registration process was performed. Before starting the modeling process, we need to validate the quality of the registration results, and this is one of the most difficult and open research problems. In this paper, we suggest a new method of evaluation of 3D point clouds based on feature extraction and comparison with a 2D reference model. This method is based on tow metrics: binary and fuzzy.

  11. 3D dynamic roadmapping for abdominal catheterizations.

    PubMed

    Bender, Frederik; Groher, Martin; Khamene, Ali; Wein, Wolfgang; Heibel, Tim Hauke; Navab, Nassir

    2008-01-01

    Despite rapid advances in interventional imaging, the navigation of a guide wire through abdominal vasculature remains, not only for novice radiologists, a difficult task. Since this navigation is mostly based on 2D fluoroscopic image sequences from one view, the process is slowed down significantly due to missing depth information and patient motion. We propose a novel approach for 3D dynamic roadmapping in deformable regions by predicting the location of the guide wire tip in a 3D vessel model from the tip's 2D location, respiratory motion analysis, and view geometry. In a first step, the method compensates for the apparent respiratory motion in 2D space before backprojecting the 2D guide wire tip into three dimensional space, using a given projection matrix. To countervail the error connected to the projection parameters and the motion compensation, as well as the ambiguity caused by vessel deformation, we establish a statistical framework, which computes a reliable estimate of the guide wire tip location within the 3D vessel model. With this 2D-to-3D transfer, the navigation can be performed from arbitrary viewing angles, disconnected from the static perspective view of the fluoroscopic sequence. Tests on a realistic breathing phantom and on synthetic data with a known ground truth clearly reveal the superiority of our approach compared to naive methods for 3D roadmapping. The concepts and information presented in this paper are based on research and are not commercially available. PMID:18982662

  12. [An updated checklist of Phlebotomine sand flies (Diptera: Psychodidae: Phlebotominae) from the Colombian Andean coffee-growing region].

    PubMed

    Contreras-Gutiérrez, María Angélica; Vélez, Iván Darío; Porter, Charles; Uribe, Sandra Inés

    2014-01-01

    An updated list of phlebotomine sand flies species in coffee growing areas in the Colombian Andean region is presented. Fifty three species were reported from 12 departments. In addition, species distribution in the region was derived from specimens obtained during intensive field work in five departments, from previously published studies and from the taxonomic revision of specimens in the entomological collection of the Programa de Estudio y Control de Enfermedades Tropicales (PECET). The list includes the genera Brumptomyia (2 species), Lutzomyia (50 species) and Warileya (1 species). The updated list contains eleven new records in the region under study, including Lutzomyia panamensis , a species of medical importance not recorded previously in this zone. Eighteen of the species are considered to be anthropophilic, and many of them have been implicated in the transmission of leishmaniasis. PMID:25504134

  13. 3D Elevation Program: summary for Vermont

    USGS Publications Warehouse

    Carswell, William J., Jr.

    2015-01-01

    The National Enhanced Elevation Assessment evaluated multiple elevation data acquisition options to determine the optimal data quality and data replacement cycle relative to cost to meet the identified requirements of the user community. The evaluation demonstrated that lidar acquisition at quality level 2 for the conterminous United States and quality level 5 interferometric synthetic aperture radar (ifsar) data for Alaska with a 6- to 10-year acquisition cycle provided the highest benefit/cost ratios. The 3D Elevation Program (3DEP) initiative selected an 8-year acquisition cycle for the respective quality levels. 3DEP, managed by the U.S. Geological Survey, the Office of Management and Budget Circular A–16 lead agency for terrestrial elevation data, responds to the growing need for high-quality topographic data and a wide range of other 3D representations of the Nation’s natural and constructed features.

  14. 3D Elevation Program: summary for Nebraska

    USGS Publications Warehouse

    Carswell, William J., Jr.

    2015-01-01

    The National Enhanced Elevation Assessment evaluated multiple elevation data acquisition options to determine the optimal data quality and data replacement cycle relative to cost to meet the identified requirements of the user community. The evaluation demonstrated that lidar acquisition at quality level 2 for the conterminous United States and quality level 5 interferometric synthetic aperture radar (ifsar) data for Alaska with a 6- to 10-year acquisition cycle provided the highest benefit/cost ratios. The 3D Elevation Program (3DEP) initiative selected an 8-year acquisition cycle for the respective quality levels. 3DEP, managed by the U.S. Geological Survey, the Office of Management and Budget Circular A–16 lead agency for terrestrial elevation data, responds to the growing need for high-quality topographic data and a wide range of other 3D representations of the Nation’s natural and constructed features.

  15. 3D scene reconstruction from multi-aperture images

    NASA Astrophysics Data System (ADS)

    Mao, Miao; Qin, Kaihuai

    2014-04-01

    With the development of virtual reality, there is a growing demand for 3D modeling of real scenes. This paper proposes a novel 3D scene reconstruction framework based on multi-aperture images. Our framework consists of four parts. Firstly, images with different apertures are captured via programmable aperture. Secondly, we use SIFT method for feature point matching. Then we exploit binocular stereo vision to calculate camera parameters and 3D positions of matching points, forming a sparse 3D scene model. Finally, we apply patch-based multi-view stereo to obtain a dense 3D scene model. Experimental results show that our method is practical and effective to reconstruct dense 3D scene.

  16. Wavefront construction in 3-D

    SciTech Connect

    Chilcoat, S.R. Hildebrand, S.T.

    1995-12-31

    Travel time computation in inhomogeneous media is essential for pre-stack Kirchhoff imaging in areas such as the sub-salt province in the Gulf of Mexico. The 2D algorithm published by Vinje, et al, has been extended to 3D to compute wavefronts in complicated inhomogeneous media. The 3D wavefront construction algorithm provides many advantages over conventional ray tracing and other methods of computing travel times in 3D. The algorithm dynamically maintains a reasonably consistent ray density without making a priori guesses at the number of rays to shoot. The determination of caustics in 3D is a straight forward geometric procedure. The wavefront algorithm also enables the computation of multi-valued travel time surfaces.

  17. Heterodyne 3D ghost imaging

    NASA Astrophysics Data System (ADS)

    Yang, Xu; Zhang, Yong; Yang, Chenghua; Xu, Lu; Wang, Qiang; Zhao, Yuan

    2016-06-01

    Conventional three dimensional (3D) ghost imaging measures range of target based on pulse fight time measurement method. Due to the limit of data acquisition system sampling rate, range resolution of the conventional 3D ghost imaging is usually low. In order to take off the effect of sampling rate to range resolution of 3D ghost imaging, a heterodyne 3D ghost imaging (HGI) system is presented in this study. The source of HGI is a continuous wave laser instead of pulse laser. Temporal correlation and spatial correlation of light are both utilized to obtain the range image of target. Through theory analysis and numerical simulations, it is demonstrated that HGI can obtain high range resolution image with low sampling rate.

  18. Combinatorial 3D Mechanical Metamaterials

    NASA Astrophysics Data System (ADS)

    Coulais, Corentin; Teomy, Eial; de Reus, Koen; Shokef, Yair; van Hecke, Martin

    2015-03-01

    We present a class of elastic structures which exhibit 3D-folding motion. Our structures consist of cubic lattices of anisotropic unit cells that can be tiled in a complex combinatorial fashion. We design and 3d-print this complex ordered mechanism, in which we combine elastic hinges and defects to tailor the mechanics of the material. Finally, we use this large design space to encode smart functionalities such as surface patterning and multistability.

  19. STAR3D: a stack-based RNA 3D structural alignment tool

    PubMed Central

    Ge, Ping; Zhang, Shaojie

    2015-01-01

    The various roles of versatile non-coding RNAs typically require the attainment of complex high-order structures. Therefore, comparing the 3D structures of RNA molecules can yield in-depth understanding of their functional conservation and evolutionary history. Recently, many powerful tools have been developed to align RNA 3D structures. Although some methods rely on both backbone conformations and base pairing interactions, none of them consider the entire hierarchical formation of the RNA secondary structure. One of the major issues is that directly applying the algorithms of matching 2D structures to the 3D coordinates is particularly time-consuming. In this article, we propose a novel RNA 3D structural alignment tool, STAR3D, to take into full account the 2D relations between stacks without the complicated comparison of secondary structures. First, the 3D conserved stacks in the inputs are identified and then combined into a tree-like consensus. Afterward, the loop regions are compared one-to-one in accordance with their relative positions in the consensus tree. The experimental results show that the prediction of STAR3D is more accurate for both non-homologous and homologous RNAs than other state-of-the-art tools with shorter running time. PMID:26184875

  20. STAR3D: a stack-based RNA 3D structural alignment tool.

    PubMed

    Ge, Ping; Zhang, Shaojie

    2015-11-16

    The various roles of versatile non-coding RNAs typically require the attainment of complex high-order structures. Therefore, comparing the 3D structures of RNA molecules can yield in-depth understanding of their functional conservation and evolutionary history. Recently, many powerful tools have been developed to align RNA 3D structures. Although some methods rely on both backbone conformations and base pairing interactions, none of them consider the entire hierarchical formation of the RNA secondary structure. One of the major issues is that directly applying the algorithms of matching 2D structures to the 3D coordinates is particularly time-consuming. In this article, we propose a novel RNA 3D structural alignment tool, STAR3D, to take into full account the 2D relations between stacks without the complicated comparison of secondary structures. First, the 3D conserved stacks in the inputs are identified and then combined into a tree-like consensus. Afterward, the loop regions are compared one-to-one in accordance with their relative positions in the consensus tree. The experimental results show that the prediction of STAR3D is more accurate for both non-homologous and homologous RNAs than other state-of-the-art tools with shorter running time. PMID:26184875

  1. Volumetric CT-based segmentation of NSCLC using 3D-Slicer

    PubMed Central

    Velazquez, Emmanuel Rios; Parmar, Chintan; Jermoumi, Mohammed; Mak, Raymond H.; van Baardwijk, Angela; Fennessy, Fiona M.; Lewis, John H.; De Ruysscher, Dirk; Kikinis, Ron; Lambin, Philippe; Aerts, Hugo J. W. L.

    2013-01-01

    Accurate volumetric assessment in non-small cell lung cancer (NSCLC) is critical for adequately informing treatments. In this study we assessed the clinical relevance of a semiautomatic computed tomography (CT)-based segmentation method using the competitive region-growing based algorithm, implemented in the free and public available 3D-Slicer software platform. We compared the 3D-Slicer segmented volumes by three independent observers, who segmented the primary tumour of 20 NSCLC patients twice, to manual slice-by-slice delineations of five physicians. Furthermore, we compared all tumour contours to the macroscopic diameter of the tumour in pathology, considered as the “gold standard”. The 3D-Slicer segmented volumes demonstrated high agreement (overlap fractions > 0.90), lower volume variability (p = 0.0003) and smaller uncertainty areas (p = 0.0002), compared to manual slice-by-slice delineations. Furthermore, 3D-Slicer segmentations showed a strong correlation to pathology (r = 0.89, 95%CI, 0.81–0.94). Our results show that semiautomatic 3D-Slicer segmentations can be used for accurate contouring and are more stable than manual delineations. Therefore, 3D-Slicer can be employed as a starting point for treatment decisions or for high-throughput data mining research, such as Radiomics, where manual delineating often represent a time-consuming bottleneck. PMID:24346241

  2. Volumetric CT-based segmentation of NSCLC using 3D-Slicer.

    PubMed

    Velazquez, Emmanuel Rios; Parmar, Chintan; Jermoumi, Mohammed; Mak, Raymond H; van Baardwijk, Angela; Fennessy, Fiona M; Lewis, John H; De Ruysscher, Dirk; Kikinis, Ron; Lambin, Philippe; Aerts, Hugo J W L

    2013-01-01

    Accurate volumetric assessment in non-small cell lung cancer (NSCLC) is critical for adequately informing treatments. In this study we assessed the clinical relevance of a semiautomatic computed tomography (CT)-based segmentation method using the competitive region-growing based algorithm, implemented in the free and public available 3D-Slicer software platform. We compared the 3D-Slicer segmented volumes by three independent observers, who segmented the primary tumour of 20 NSCLC patients twice, to manual slice-by-slice delineations of five physicians. Furthermore, we compared all tumour contours to the macroscopic diameter of the tumour in pathology, considered as the "gold standard". The 3D-Slicer segmented volumes demonstrated high agreement (overlap fractions > 0.90), lower volume variability (p = 0.0003) and smaller uncertainty areas (p = 0.0002), compared to manual slice-by-slice delineations. Furthermore, 3D-Slicer segmentations showed a strong correlation to pathology (r = 0.89, 95%CI, 0.81-0.94). Our results show that semiautomatic 3D-Slicer segmentations can be used for accurate contouring and are more stable than manual delineations. Therefore, 3D-Slicer can be employed as a starting point for treatment decisions or for high-throughput data mining research, such as Radiomics, where manual delineating often represent a time-consuming bottleneck. PMID:24346241

  3. ICER-3D Hyperspectral Image Compression Software

    NASA Technical Reports Server (NTRS)

    Xie, Hua; Kiely, Aaron; Klimesh, matthew; Aranki, Nazeeh

    2010-01-01

    Software has been developed to implement the ICER-3D algorithm. ICER-3D effects progressive, three-dimensional (3D), wavelet-based compression of hyperspectral images. If a compressed data stream is truncated, the progressive nature of the algorithm enables reconstruction of hyperspectral data at fidelity commensurate with the given data volume. The ICER-3D software is capable of providing either lossless or lossy compression, and incorporates an error-containment scheme to limit the effects of data loss during transmission. The compression algorithm, which was derived from the ICER image compression algorithm, includes wavelet-transform, context-modeling, and entropy coding subalgorithms. The 3D wavelet decomposition structure used by ICER-3D exploits correlations in all three dimensions of sets of hyperspectral image data, while facilitating elimination of spectral ringing artifacts, using a technique summarized in "Improving 3D Wavelet-Based Compression of Spectral Images" (NPO-41381), NASA Tech Briefs, Vol. 33, No. 3 (March 2009), page 7a. Correlation is further exploited by a context-modeling subalgorithm, which exploits spectral dependencies in the wavelet-transformed hyperspectral data, using an algorithm that is summarized in "Context Modeler for Wavelet Compression of Hyperspectral Images" (NPO-43239), which follows this article. An important feature of ICER-3D is a scheme for limiting the adverse effects of loss of data during transmission. In this scheme, as in the similar scheme used by ICER, the spatial-frequency domain is partitioned into rectangular error-containment regions. In ICER-3D, the partitions extend through all the wavelength bands. The data in each partition are compressed independently of those in the other partitions, so that loss or corruption of data from any partition does not affect the other partitions. Furthermore, because compression is progressive within each partition, when data are lost, any data from that partition received

  4. 3-D inversion of magnetotelluric Phase Tensor

    NASA Astrophysics Data System (ADS)

    Patro, Prasanta; Uyeshima, Makoto

    2010-05-01

    Three-dimensional (3-D) inversion of the magnetotelluric (MT) has become a routine practice among the MT community due to progress of algorithms for 3-D inverse problems (e.g. Mackie and Madden, 1993; Siripunvaraporn et al., 2005). While availability of such 3-D inversion codes have increased the resolving power of the MT data and improved the interpretation, on the other hand, still the galvanic effects poses difficulties in interpretation of resistivity structure obtained from the MT data. In order to tackle the galvanic distortion of MT data, Caldwell et al., (2004) introduced the concept of phase tensor. They demonstrated how the regional phase information can be retrieved from the observed impedance tensor without any assumptions for structural dimension, where both the near surface inhomogeneity and the regional conductivity structures can be 3-D. We made an attempt to modify a 3-D inversion code (Siripunvaraporn et al., 2005) to directly invert the phase tensor elements. We present here the main modification done in the sensitivity calculation and then show a few synthetic studies and its application to the real data. The synthetic model study suggests that the prior model (m_0) setting is important in retrieving the true model. This is because estimation of correct induction scale length lacks in the phase tensor inversion process. Comparison between results from conventional impedance inversion and new phase tensor inversion suggests that, in spite of presence of the galvanic distortion (due to near surface checkerboard anomalies in our case), the new inverion algorithm retrieves the regional conductivitity structure reliably. We applied the new inversion to the real data from the Indian sub continent and compared with the results from conventional impedance inversion.

  5. From 3D view to 3D print

    NASA Astrophysics Data System (ADS)

    Dima, M.; Farisato, G.; Bergomi, M.; Viotto, V.; Magrin, D.; Greggio, D.; Farinato, J.; Marafatto, L.; Ragazzoni, R.; Piazza, D.

    2014-08-01

    In the last few years 3D printing is getting more and more popular and used in many fields going from manufacturing to industrial design, architecture, medical support and aerospace. 3D printing is an evolution of bi-dimensional printing, which allows to obtain a solid object from a 3D model, realized with a 3D modelling software. The final product is obtained using an additive process, in which successive layers of material are laid down one over the other. A 3D printer allows to realize, in a simple way, very complex shapes, which would be quite difficult to be produced with dedicated conventional facilities. Thanks to the fact that the 3D printing is obtained superposing one layer to the others, it doesn't need any particular work flow and it is sufficient to simply draw the model and send it to print. Many different kinds of 3D printers exist based on the technology and material used for layer deposition. A common material used by the toner is ABS plastics, which is a light and rigid thermoplastic polymer, whose peculiar mechanical properties make it diffusely used in several fields, like pipes production and cars interiors manufacturing. I used this technology to create a 1:1 scale model of the telescope which is the hardware core of the space small mission CHEOPS (CHaracterising ExOPlanets Satellite) by ESA, which aims to characterize EXOplanets via transits observations. The telescope has a Ritchey-Chrétien configuration with a 30cm aperture and the launch is foreseen in 2017. In this paper, I present the different phases for the realization of such a model, focusing onto pros and cons of this kind of technology. For example, because of the finite printable volume (10×10×12 inches in the x, y and z directions respectively), it has been necessary to split the largest parts of the instrument in smaller components to be then reassembled and post-processed. A further issue is the resolution of the printed material, which is expressed in terms of layers

  6. YouDash3D: exploring stereoscopic 3D gaming for 3D movie theaters

    NASA Astrophysics Data System (ADS)

    Schild, Jonas; Seele, Sven; Masuch, Maic

    2012-03-01

    Along with the success of the digitally revived stereoscopic cinema, events beyond 3D movies become attractive for movie theater operators, i.e. interactive 3D games. In this paper, we present a case that explores possible challenges and solutions for interactive 3D games to be played by a movie theater audience. We analyze the setting and showcase current issues related to lighting and interaction. Our second focus is to provide gameplay mechanics that make special use of stereoscopy, especially depth-based game design. Based on these results, we present YouDash3D, a game prototype that explores public stereoscopic gameplay in a reduced kiosk setup. It features live 3D HD video stream of a professional stereo camera rig rendered in a real-time game scene. We use the effect to place the stereoscopic effigies of players into the digital game. The game showcases how stereoscopic vision can provide for a novel depth-based game mechanic. Projected trigger zones and distributed clusters of the audience video allow for easy adaptation to larger audiences and 3D movie theater gaming.

  7. State-Of of 3d National Mapping in 2016

    NASA Astrophysics Data System (ADS)

    Stoter, Jantien; Vallet, Bruno; Lithen, Thomas; Pla, Maria; Wozniak, Piotr; Kellenberger, Tobias; Streilein, Andre; Ilves, Risto; Ledoux, Hugo

    2016-06-01

    Techniques for 3D mapping are maturing. At the same time the need for 3D data is increasing. This has pushed national (and regional) mapping agencies (NMAs) to consider extending their traditional task of providing topographic data into the third dimension. To show how research results in 3D mapping obtained over the past twenty years have been adopted by practice, this paper presents the ongoing work on 3D mapping within seven NMAs, all member of the 3D Special Interest Group of European Spatial Data Research (EuroSDR). The paper shows that some NMAs are still in the initial (experimental) phase of 3D mapping, while others have already built solid databases to maintain 2.5D and 3D topographic data covering their whole country.

  8. A Self-Calibrating Multi-Band Region Growing Approach to Segmentation of Single and Multi-Band Images

    SciTech Connect

    Paglieroni, D W

    2002-12-20

    Image segmentation transforms pixel-level information from raw images to a higher level of abstraction in which related pixels are grouped into disjoint spatial regions. Such regions typically correspond to natural or man-made objects or structures, natural variations in land cover, etc. For many image interpretation tasks (such as land use assessment, automatic target cueing, defining relationships between objects, etc.), segmentation can be an important early step. Remotely sensed images (e.g., multi-spectral and hyperspectral images) often contain many spectral bands (i.e., multiple layers of 2D images). Multi-band images are important because they contain more information than single-band images. Objects or natural variations that are readily apparent in certain spectral bands may be invisible in 2D broadband images. In this paper, the classical region growing approach to image segmentation is generalized from single to multi-band images. While it is widely recognized that the quality of image segmentation is affected by which segmentation algorithm is used, this paper shows that algorithm parameter values can have an even more profound effect. A novel self-calibration framework is developed for automatically selecting parameter values that produce segmentations that most closely resemble a calibration edge map (derived separately using a simple edge detector). Although the framework is generic in the sense that it can imbed any core segmentation algorithm, this paper only demonstrates self-calibration with multi-band region growing. The framework is applied to a variety of AVIRIS image blocks at different spectral resolutions, in an effort to assess the impact of spectral resolution on segmentation quality. The image segmentations are assessed quantitatively, and it is shown that segmentation quality does not generally appear to be highly correlated with spectral resolution.

  9. Remote 3D Medical Consultation

    NASA Astrophysics Data System (ADS)

    Welch, Greg; Sonnenwald, Diane H.; Fuchs, Henry; Cairns, Bruce; Mayer-Patel, Ketan; Yang, Ruigang; State, Andrei; Towles, Herman; Ilie, Adrian; Krishnan, Srinivas; Söderholm, Hanna M.

    Two-dimensional (2D) video-based telemedical consultation has been explored widely in the past 15-20 years. Two issues that seem to arise in most relevant case studies are the difficulty associated with obtaining the desired 2D camera views, and poor depth perception. To address these problems we are exploring the use of a small array of cameras to synthesize a spatially continuous range of dynamic three-dimensional (3D) views of a remote environment and events. The 3D views can be sent across wired or wireless networks to remote viewers with fixed displays or mobile devices such as a personal digital assistant (PDA). The viewpoints could be specified manually or automatically via user head or PDA tracking, giving the remote viewer virtual head- or hand-slaved (PDA-based) remote cameras for mono or stereo viewing. We call this idea remote 3D medical consultation (3DMC). In this article we motivate and explain the vision for 3D medical consultation; we describe the relevant computer vision/graphics, display, and networking research; we present a proof-of-concept prototype system; and we present some early experimental results supporting the general hypothesis that 3D remote medical consultation could offer benefits over conventional 2D televideo.

  10. Speaking Volumes About 3-D

    NASA Technical Reports Server (NTRS)

    2002-01-01

    In 1999, Genex submitted a proposal to Stennis Space Center for a volumetric 3-D display technique that would provide multiple users with a 360-degree perspective to simultaneously view and analyze 3-D data. The futuristic capabilities of the VolumeViewer(R) have offered tremendous benefits to commercial users in the fields of medicine and surgery, air traffic control, pilot training and education, computer-aided design/computer-aided manufacturing, and military/battlefield management. The technology has also helped NASA to better analyze and assess the various data collected by its satellite and spacecraft sensors. Genex capitalized on its success with Stennis by introducing two separate products to the commercial market that incorporate key elements of the 3-D display technology designed under an SBIR contract. The company Rainbow 3D(R) imaging camera is a novel, three-dimensional surface profile measurement system that can obtain a full-frame 3-D image in less than 1 second. The third product is the 360-degree OmniEye(R) video system. Ideal for intrusion detection, surveillance, and situation management, this unique camera system offers a continuous, panoramic view of a scene in real time.

  11. 3D-Printed Microfluidics.

    PubMed

    Au, Anthony K; Huynh, Wilson; Horowitz, Lisa F; Folch, Albert

    2016-03-14

    The advent of soft lithography allowed for an unprecedented expansion in the field of microfluidics. However, the vast majority of PDMS microfluidic devices are still made with extensive manual labor, are tethered to bulky control systems, and have cumbersome user interfaces, which all render commercialization difficult. On the other hand, 3D printing has begun to embrace the range of sizes and materials that appeal to the developers of microfluidic devices. Prior to fabrication, a design is digitally built as a detailed 3D CAD file. The design can be assembled in modules by remotely collaborating teams, and its mechanical and fluidic behavior can be simulated using finite-element modeling. As structures are created by adding materials without the need for etching or dissolution, processing is environmentally friendly and economically efficient. We predict that in the next few years, 3D printing will replace most PDMS and plastic molding techniques in academia. PMID:26854878

  12. 3D Computations and Experiments

    SciTech Connect

    Couch, R; Faux, D; Goto, D; Nikkel, D

    2004-04-05

    This project consists of two activities. Task A, Simulations and Measurements, combines all the material model development and associated numerical work with the materials-oriented experimental activities. The goal of this effort is to provide an improved understanding of dynamic material properties and to provide accurate numerical representations of those properties for use in analysis codes. Task B, ALE3D Development, involves general development activities in the ALE3D code with the focus of improving simulation capabilities for problems of mutual interest to DoD and DOE. Emphasis is on problems involving multi-phase flow, blast loading of structures and system safety/vulnerability studies.

  13. 3D Computations and Experiments

    SciTech Connect

    Couch, R; Faux, D; Goto, D; Nikkel, D

    2003-05-12

    This project is in its first full year after the combining of two previously funded projects: ''3D Code Development'' and ''Dynamic Material Properties''. The motivation behind this move was to emphasize and strengthen the ties between the experimental work and the computational model development in the materials area. The next year's activities will indicate the merging of the two efforts. The current activity is structured in two tasks. Task A, ''Simulations and Measurements'', combines all the material model development and associated numerical work with the materials-oriented experimental activities. Task B, ''ALE3D Development'', is a continuation of the non-materials related activities from the previous project.

  14. Numerical simulation of 3D breaking waves

    NASA Astrophysics Data System (ADS)

    Fraunie, Philippe; Golay, Frederic

    2015-04-01

    Numerical methods dealing with two phase flows basically can be classified in two ways : the "interface tracking" methods when the two phases are resolved separately including boundary conditions fixed at the interface and the "interface capturing" methods when a single flow is considered with variable density. Physical and numerical properties of the two approaches are discussed, based on some numerical experiments performed concerning 3D breaking waves. Acknowledgements : This research was supported by the Modtercom program of Region PACA.

  15. A comparative synoptic climatology of cool-season rainfall in major grain-growing regions of southern Australia

    NASA Astrophysics Data System (ADS)

    Pook, Michael J.; Risbey, James S.; McIntosh, Peter C.

    2014-08-01

    Two distinct synoptic weather systems, cut-off lows and fronts, deliver most of the cool-season rainfall to the cropping regions of southern Australia. A comparative synoptic climatology of daily rainfall events over approximately five decades reveals both spatial and temporal variations of the dominant synoptic types. The rainfall characteristics and associated large-scale drivers differ between the two synoptic types. Understanding regional rainfall depends on understanding these differences. Cut-off lows contribute one half of growing season rainfall in southeast Australia, while frontal systems associated with Southern Ocean depressions contribute about a third. The proportions are reversed in the Central Wheat Belt (CWB) of Western Australia where Southern Ocean fronts are the dominant source of growing season rainfall. In the southern island state of Tasmania, topography strongly influences the outcome with cut-off lows contributing about half the rainfall near the east coast and fronts dominating a short distance to the west. Cut-off lows generally contribute their highest proportion of rainfall in the austral autumn and spring while frontal rainfall is at its maximum in late winter. Cut-off low rainfall contributes more strongly in percentage terms to the recent decline in rainfall. The distribution of synoptic types is explained by the dominant long-wave structure in the winter half of the year. The major trough near Western Australia favours frontogenesis to the southwest of the CWB but fronts moving out of the region encounter a persistent meridional ridge in the Tasman Sea where there is a high frequency of blocking events.

  16. 3D barcodes: theoretical aspects and practical implementation

    NASA Astrophysics Data System (ADS)

    Gladstein, David; Kakarala, Ramakrishna; Baharav, Zachi

    2015-02-01

    This paper introduces the concept of three dimensional (3D) barcodes. A 3D barcode is composed of an array of 3D cells, called modules, and each can be either filled or empty, corresponding to two possible values of a bit. These barcodes have great theoretical promise thanks to their very large information capacity, which grows as the cube of the linear size of the barcode, and in addition are becoming practically manufacturable thanks to the ubiquitous use of 3D printers. In order to make these 3D barcodes practical for consumers, it is important to keep the decoding simple using commonly available means like smartphones. We therefore limit ourselves to decoding mechanisms based only on three projections of the barcode, which imply specific constraints on the barcode itself. The three projections produce the marginal sums of the 3D cube, which are the counts of filled-in modules along each Cartesian axis. In this paper we present some of the theoretical aspects of the 2D and 3D cases, and describe the resulting complexity of the 3D case. We then describe a method to reduce these complexities into a practical application. The method features an asymmetric coding scheme, where the decoder is much simpler than the encoder. We close by demonstrating 3D barcodes we created and their usability.

  17. SNL3dFace

    2007-07-20

    This software distribution contains MATLAB and C++ code to enable identity verification using 3D images that may or may not contain a texture component. The code is organized to support system performance testing and system capability demonstration through the proper configuration of the available user interface. Using specific algorithm parameters the face recognition system has been demonstrated to achieve a 96.6% verification rate (Pd) at 0.001 false alarm rate. The system computes robust facial featuresmore » of a 3D normalized face using Principal Component Analysis (PCA) and Fisher Linear Discriminant Analysis (FLDA). A 3D normalized face is obtained by alighning each face, represented by a set of XYZ coordinated, to a scaled reference face using the Iterative Closest Point (ICP) algorithm. The scaled reference face is then deformed to the input face using an iterative framework with parameters that control the deformed surface regulation an rate of deformation. A variety of options are available to control the information that is encoded by the PCA. Such options include the XYZ coordinates, the difference of each XYZ coordinates from the reference, the Z coordinate, the intensity/texture values, etc. In addition to PCA/FLDA feature projection this software supports feature matching to obtain similarity matrices for performance analysis. In addition, this software supports visualization of the STL, MRD, 2D normalized, and PCA synthetic representations in a 3D environment.« less

  18. Making Inexpensive 3-D Models

    ERIC Educational Resources Information Center

    Manos, Harry

    2016-01-01

    Visual aids are important to student learning, and they help make the teacher's job easier. Keeping with the "TPT" theme of "The Art, Craft, and Science of Physics Teaching," the purpose of this article is to show how teachers, lacking equipment and funds, can construct a durable 3-D model reference frame and a model gravity…

  19. SNL3dFace

    SciTech Connect

    Russ, Trina; Koch, Mark; Koudelka, Melissa; Peters, Ralph; Little, Charles; Boehnen, Chris; Peters, Tanya

    2007-07-20

    This software distribution contains MATLAB and C++ code to enable identity verification using 3D images that may or may not contain a texture component. The code is organized to support system performance testing and system capability demonstration through the proper configuration of the available user interface. Using specific algorithm parameters the face recognition system has been demonstrated to achieve a 96.6% verification rate (Pd) at 0.001 false alarm rate. The system computes robust facial features of a 3D normalized face using Principal Component Analysis (PCA) and Fisher Linear Discriminant Analysis (FLDA). A 3D normalized face is obtained by alighning each face, represented by a set of XYZ coordinated, to a scaled reference face using the Iterative Closest Point (ICP) algorithm. The scaled reference face is then deformed to the input face using an iterative framework with parameters that control the deformed surface regulation an rate of deformation. A variety of options are available to control the information that is encoded by the PCA. Such options include the XYZ coordinates, the difference of each XYZ coordinates from the reference, the Z coordinate, the intensity/texture values, etc. In addition to PCA/FLDA feature projection this software supports feature matching to obtain similarity matrices for performance analysis. In addition, this software supports visualization of the STL, MRD, 2D normalized, and PCA synthetic representations in a 3D environment.

  20. 3D Printing: Exploring Capabilities

    ERIC Educational Resources Information Center

    Samuels, Kyle; Flowers, Jim

    2015-01-01

    As 3D printers become more affordable, schools are using them in increasing numbers. They fit well with the emphasis on product design in technology and engineering education, allowing students to create high-fidelity physical models to see and test different iterations in their product designs. They may also help students to "think in three…

  1. Comparison of Insecticide Susceptibilities of Empoasca vitis (Hemiptera: Cicadellidae) from Three Main Tea-Growing Regions in China.

    PubMed

    Wei, Qi; Yu, Hua-Yang; Niu, Chun-Dong; Yao, Rong; Wu, Shun-Fan; Chen, Zhuo; Gao, Cong-Fen

    2015-06-01

    Empoasca vitis (Göthe) is an important insect pest in tea-growing areas of China, and chemical control is the main tactic for the management of this pest. Due to the pressure of increasing insecticide resistance and more stringent food safety regulations, development of sound IPM strategies for E. vitis is an urgent matter. This study comparatively evaluated four field populations of E. vitis from three different tea-growing regions in China for their susceptibilities to eight insecticides using a simple leaf-dip methodology. E. vitis was found to be most sensitive to indoxacarb (LC50<0.5 mg/liter) and least sensitive to isoprocarb (LC50>5 mg/liter) and sophocarpidine (LC50>95 mg/liter, a botanical pesticide) regardless of populations. Population (geographical) variations were higher for indoxacarb and imidacloprid than other compounds. Judging by the 95% fiducial limits of LC50 values, all populations had similar susceptibilities to chlorfenapyr, bifenthrin, and acetamiprid or imidacloprid. Correlation analysis suggested that chlorfenapyr and indoxacarb or isoprocarb may have a high risk of cross resistance. Considering potency (LC50) and maximum residual levels, chlorfenapyr and bifenthrin are good insecticide options followed by acetamiprid and indoxacarb. These results provide valuable information to intelligently select insecticides for IPM programs that are efficacious against E. vitis while also managing insecticide resistance and maximum residual levels for tea production in China. PMID:26470253

  2. An aerosol climatology for a rapidly growing arid region (southern Arizona): Major aerosol species and remotely sensed aerosol properties

    PubMed Central

    Sorooshian, Armin; Wonaschütz, Anna; Jarjour, Elias G.; Hashimoto, Bryce I.; Schichtel, Bret A.; Betterton, Eric A.

    2014-01-01

    This study reports a comprehensive characterization of atmospheric aerosol particle properties in relation to meteorological and back trajectory data in the southern Arizona region, which includes two of the fastest growing metropolitan areas in the United States (Phoenix and Tucson). Multiple data sets (MODIS, AERONET, OMI/TOMS, MISR, GOCART, ground-based aerosol measurements) are used to examine monthly trends in aerosol composition, aerosol optical depth (AOD), and aerosol size. Fine soil, sulfate, and organics dominate PM2.5 mass in the region. Dust strongly influences the region between March and July owing to the dry and hot meteorological conditions and back trajectory patterns. Because monsoon precipitation begins typically in July, dust levels decrease, while AOD, sulfate, and organic aerosol reach their maximum levels because of summertime photochemistry and monsoon moisture. Evidence points to biogenic volatile organic compounds being a significant source of secondary organic aerosol in this region. Biomass burning also is shown to be a major contributor to the carbonaceous aerosol budget in the region, leading to enhanced organic and elemental carbon levels aloft at a sky-island site north of Tucson (Mt. Lemmon). Phoenix exhibits different monthly trends for aerosol components in comparison with the other sites owing to the strong influence of fossil carbon and anthropogenic dust. Trend analyses between 1988 and 2009 indicate that the strongest statistically significant trends are reductions in sulfate, elemental carbon, and organic carbon, and increases in fine soil during the spring (March–May) at select sites. These results can be explained by population growth, land-use changes, and improved source controls. PMID:24707452

  3. 3D bioprinting of heterogeneous aortic valve conduits with alginate/gelatin hydrogels.

    PubMed

    Duan, Bin; Hockaday, Laura A; Kang, Kevin H; Butcher, Jonathan T

    2013-05-01

    Heart valve disease is a serious and growing public health problem for which prosthetic replacement is most commonly indicated. Current prosthetic devices are inadequate for younger adults and growing children. Tissue engineered living aortic valve conduits have potential for remodeling, regeneration, and growth, but fabricating natural anatomical complexity with cellular heterogeneity remain challenging. In the current study, we implement 3D bioprinting to fabricate living alginate/gelatin hydrogel valve conduits with anatomical architecture and direct incorporation of dual cell types in a regionally constrained manner. Encapsulated aortic root sinus smooth muscle cells (SMC) and aortic valve leaflet interstitial cells (VIC) were viable within alginate/gelatin hydrogel discs over 7 days in culture. Acellular 3D printed hydrogels exhibited reduced modulus, ultimate strength, and peak strain reducing slightly over 7-day culture, while the tensile biomechanics of cell-laden hydrogels were maintained. Aortic valve conduits were successfully bioprinted with direct encapsulation of SMC in the valve root and VIC in the leaflets. Both cell types were viable (81.4 ± 3.4% for SMC and 83.2 ± 4.0% for VIC) within 3D printed tissues. Encapsulated SMC expressed elevated alpha-smooth muscle actin, while VIC expressed elevated vimentin. These results demonstrate that anatomically complex, heterogeneously encapsulated aortic valve hydrogel conduits can be fabricated with 3D bioprinting. PMID:23015540

  4. TACO3D. 3-D Finite Element Heat Transfer Code

    SciTech Connect

    Mason, W.E.

    1992-03-04

    TACO3D is a three-dimensional, finite-element program for heat transfer analysis. An extension of the two-dimensional TACO program, it can perform linear and nonlinear analyses and can be used to solve either transient or steady-state problems. The program accepts time-dependent or temperature-dependent material properties, and materials may be isotropic or orthotropic. A variety of time-dependent and temperature-dependent boundary conditions and loadings are available including temperature, flux, convection, and radiation boundary conditions and internal heat generation. Additional specialized features treat enclosure radiation, bulk nodes, and master/slave internal surface conditions (e.g., contact resistance). Data input via a free-field format is provided. A user subprogram feature allows for any type of functional representation of any independent variable. A profile (bandwidth) minimization option is available. The code is limited to implicit time integration for transient solutions. TACO3D has no general mesh generation capability. Rows of evenly-spaced nodes and rows of sequential elements may be generated, but the program relies on separate mesh generators for complex zoning. TACO3D does not have the ability to calculate view factors internally. Graphical representation of data in the form of time history and spatial plots is provided through links to the POSTACO and GRAPE postprocessor codes.

  5. Wafer-Level 3D Integration for ULSI Interconnects

    NASA Astrophysics Data System (ADS)

    Gutmann, Ronald J.; Lu, Jian-Qiang

    Three-dimensional (3D) integration in a system-in-a-package (SiP) implementation (packaging-based 3D) is becoming increasingly used in consumer, computer, and communication applications where form factor is critical. In particular, the hand-held market for a growing myriad of voice, data, messaging, and imaging products is enabled by packaging-based 3D integration (i.e., stacking and connecting individual chips). The key drivers are for increased memory capacity and for heterogeneous integration of different IC technologies and functions.

  6. 3D Wavelet-Based Filter and Method

    DOEpatents

    Moss, William C.; Haase, Sebastian; Sedat, John W.

    2008-08-12

    A 3D wavelet-based filter for visualizing and locating structural features of a user-specified linear size in 2D or 3D image data. The only input parameter is a characteristic linear size of the feature of interest, and the filter output contains only those regions that are correlated with the characteristic size, thus denoising the image.

  7. Optoplasmonics: hybridization in 3D

    NASA Astrophysics Data System (ADS)

    Rosa, L.; Gervinskas, G.; Žukauskas, A.; Malinauskas, M.; Brasselet, E.; Juodkazis, S.

    2013-12-01

    Femtosecond laser fabrication has been used to make hybrid refractive and di ractive micro-optical elements in photo-polymer SZ2080. For applications in micro- uidics, axicon lenses were fabricated (both single and arrays), for generation of light intensity patterns extending through the entire depth of a typically tens-of-micrometers deep channel. Further hybridisation of an axicon with a plasmonic slot is fabricated and demonstrated nu- merically. Spiralling chiral grooves were inscribed into a 100-nm-thick gold coating sputtered over polymerized micro-axicon lenses, using a focused ion beam. This demonstrates possibility of hybridisation between optical and plasmonic 3D micro-optical elements. Numerical modelling of optical performance by 3D-FDTD method is presented.

  8. 3-D Relativistic MHD Simulations

    NASA Astrophysics Data System (ADS)

    Nishikawa, K.-I.; Frank, J.; Koide, S.; Sakai, J.-I.; Christodoulou, D. M.; Sol, H.; Mutel, R. L.

    1998-12-01

    We present 3-D numerical simulations of moderately hot, supersonic jets propagating initially along or obliquely to the field lines of a denser magnetized background medium with Lorentz factors of W = 4.56 and evolving in a four-dimensional spacetime. The new results are understood as follows: Relativistic simulations have consistently shown that these jets are effectively heavy and so they do not suffer substantial momentum losses and are not decelerated as efficiently as their nonrelativistic counterparts. In addition, the ambient magnetic field, however strong, can be pushed aside with relative ease by the beam, provided that the degrees of freedom associated with all three spatial dimensions are followed self-consistently in the simulations. This effect is analogous to pushing Japanese ``noren'' or vertical Venetian blinds out of the way while the slats are allowed to bend in 3-D space rather than as a 2-D slab structure.

  9. Forensic 3D Scene Reconstruction

    SciTech Connect

    LITTLE,CHARLES Q.; PETERS,RALPH R.; RIGDON,J. BRIAN; SMALL,DANIEL E.

    1999-10-12

    Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a feasible prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.

  10. Forensic 3D scene reconstruction

    NASA Astrophysics Data System (ADS)

    Little, Charles Q.; Small, Daniel E.; Peters, Ralph R.; Rigdon, J. B.

    2000-05-01

    Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a fieldable prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.

  11. 360-degree 3D profilometry

    NASA Astrophysics Data System (ADS)

    Song, Yuanhe; Zhao, Hong; Chen, Wenyi; Tan, Yushan

    1997-12-01

    A new method of 360 degree turning 3D shape measurement in which light sectioning and phase shifting techniques are both used is presented in this paper. A sine light field is applied in the projected light stripe, meanwhile phase shifting technique is used to calculate phases of the light slit. Thereafter wrapped phase distribution of the slit is formed and the unwrapping process is made by means of the height information based on the light sectioning method. Therefore phase measuring results with better precision can be obtained. At last the target 3D shape data can be produced according to geometric relationships between phases and the object heights. The principles of this method are discussed in detail and experimental results are shown in this paper.

  12. 3D Printable Graphene Composite.

    PubMed

    Wei, Xiaojun; Li, Dong; Jiang, Wei; Gu, Zheming; Wang, Xiaojuan; Zhang, Zengxing; Sun, Zhengzong

    2015-01-01

    In human being's history, both the Iron Age and Silicon Age thrived after a matured massive processing technology was developed. Graphene is the most recent superior material which could potentially initialize another new material Age. However, while being exploited to its full extent, conventional processing methods fail to provide a link to today's personalization tide. New technology should be ushered in. Three-dimensional (3D) printing fills the missing linkage between graphene materials and the digital mainstream. Their alliance could generate additional stream to push the graphene revolution into a new phase. Here we demonstrate for the first time, a graphene composite, with a graphene loading up to 5.6 wt%, can be 3D printable into computer-designed models. The composite's linear thermal coefficient is below 75 ppm·°C(-1) from room temperature to its glass transition temperature (Tg), which is crucial to build minute thermal stress during the printing process. PMID:26153673

  13. 3D Printed Robotic Hand

    NASA Technical Reports Server (NTRS)

    Pizarro, Yaritzmar Rosario; Schuler, Jason M.; Lippitt, Thomas C.

    2013-01-01

    Dexterous robotic hands are changing the way robots and humans interact and use common tools. Unfortunately, the complexity of the joints and actuations drive up the manufacturing cost. Some cutting edge and commercially available rapid prototyping machines now have the ability to print multiple materials and even combine these materials in the same job. A 3D model of a robotic hand was designed using Creo Parametric 2.0. Combining "hard" and "soft" materials, the model was printed on the Object Connex350 3D printer with the purpose of resembling as much as possible the human appearance and mobility of a real hand while needing no assembly. After printing the prototype, strings where installed as actuators to test mobility. Based on printing materials, the manufacturing cost of the hand was $167, significantly lower than other robotic hands without the actuators since they have more complex assembly processes.

  14. 3D light scanning macrography.

    PubMed

    Huber, D; Keller, M; Robert, D

    2001-08-01

    The technique of 3D light scanning macrography permits the non-invasive surface scanning of small specimens at magnifications up to 200x. Obviating both the problem of limited depth of field inherent to conventional close-up macrophotography and the metallic coating required by scanning electron microscopy, 3D light scanning macrography provides three-dimensional digital images of intact specimens without the loss of colour, texture and transparency information. This newly developed technique offers a versatile, portable and cost-efficient method for the non-invasive digital and photographic documentation of small objects. Computer controlled device operation and digital image acquisition facilitate fast and accurate quantitative morphometric investigations, and the technique offers a broad field of research and educational applications in biological, medical and materials sciences. PMID:11489078

  15. 3D-graphite structure

    SciTech Connect

    Belenkov, E. A. Ali-Pasha, V. A.

    2011-01-15

    The structure of clusters of some new carbon 3D-graphite phases have been calculated using the molecular-mechanics methods. It is established that 3D-graphite polytypes {alpha}{sub 1,1}, {alpha}{sub 1,3}, {alpha}{sub 1,5}, {alpha}{sub 2,1}, {alpha}{sub 2,3}, {alpha}{sub 3,1}, {beta}{sub 1,2}, {beta}{sub 1,4}, {beta}{sub 1,6}, {beta}{sub 2,1}, and {beta}{sub 3,2} consist of sp{sup 2}-hybridized atoms, have hexagonal unit cells, and differ in regards to the structure of layers and order of their alternation. A possible way to experimentally synthesize new carbon phases is proposed: the polymerization and carbonization of hydrocarbon molecules.

  16. [Real time 3D echocardiography].

    PubMed

    Bauer, F; Shiota, T; Thomas, J D

    2001-07-01

    Three-dimensional representation of the heart is an old concern. Usually, 3D reconstruction of the cardiac mass is made by successive acquisition of 2D sections, the spatial localisation and orientation of which require complex guiding systems. More recently, the concept of volumetric acquisition has been introduced. A matricial emitter-receiver probe complex with parallel data processing provides instantaneous of a pyramidal 64 degrees x 64 degrees volume. The image is restituted in real time and is composed of 3 planes (planes B and C) which can be displaced in all spatial directions at any time during acquisition. The flexibility of this system of acquisition allows volume and mass measurement with greater accuracy and reproducibility, limiting inter-observer variability. Free navigation of the planes of investigation allows reconstruction for qualitative and quantitative analysis of valvular heart disease and other pathologies. Although real time 3D echocardiography is ready for clinical usage, some improvements are still necessary to improve its conviviality. Then real time 3D echocardiography could be the essential tool for understanding, diagnosis and management of patients. PMID:11494630

  17. [Real time 3D echocardiography

    NASA Technical Reports Server (NTRS)

    Bauer, F.; Shiota, T.; Thomas, J. D.

    2001-01-01

    Three-dimensional representation of the heart is an old concern. Usually, 3D reconstruction of the cardiac mass is made by successive acquisition of 2D sections, the spatial localisation and orientation of which require complex guiding systems. More recently, the concept of volumetric acquisition has been introduced. A matricial emitter-receiver probe complex with parallel data processing provides instantaneous of a pyramidal 64 degrees x 64 degrees volume. The image is restituted in real time and is composed of 3 planes (planes B and C) which can be displaced in all spatial directions at any time during acquisition. The flexibility of this system of acquisition allows volume and mass measurement with greater accuracy and reproducibility, limiting inter-observer variability. Free navigation of the planes of investigation allows reconstruction for qualitative and quantitative analysis of valvular heart disease and other pathologies. Although real time 3D echocardiography is ready for clinical usage, some improvements are still necessary to improve its conviviality. Then real time 3D echocardiography could be the essential tool for understanding, diagnosis and management of patients.

  18. Bringing 3D Printing to Geophysical Science Education

    NASA Astrophysics Data System (ADS)

    Boghosian, A.; Turrin, M.; Porter, D. F.

    2014-12-01

    3D printing technology has been embraced by many technical fields, and is rapidly making its way into peoples' homes and schools. While there is a growing educational and hobbyist community engaged in the STEM focused technical and intellectual challenges associated with 3D printing, there is unrealized potential for the earth science community to use 3D printing to communicate scientific research to the public. Moreover, 3D printing offers scientists the opportunity to connect students and the public with novel visualizations of real data. As opposed to introducing terrestrial measurements through the use of colormaps and gradients, scientists can represent 3D concepts with 3D models, offering a more intuitive education tool. Furthermore, the tactile aspect of models make geophysical concepts accessible to a wide range of learning styles like kinesthetic or tactile, and learners including both visually impaired and color-blind students.We present a workflow whereby scientists, students, and the general public will be able to 3D print their own versions of geophysical datasets, even adding time through layering to include a 4th dimension, for a "4D" print. This will enable scientists with unique and expert insights into the data to easily create the tools they need to communicate their research. It will allow educators to quickly produce teaching aids for their students. Most importantly, it will enable the students themselves to translate the 2D representation of geophysical data into a 3D representation of that same data, reinforcing spatial reasoning.

  19. Multizone Paper Platform for 3D Cell Cultures

    PubMed Central

    Derda, Ratmir; Hong, Estrella; Mwangi, Martin; Mammoto, Akiko; Ingber, Donald E.; Whitesides, George M.

    2011-01-01

    In vitro 3D culture is an important model for tissues in vivo. Cells in different locations of 3D tissues are physiologically different, because they are exposed to different concentrations of oxygen, nutrients, and signaling molecules, and to other environmental factors (temperature, mechanical stress, etc). The majority of high-throughput assays based on 3D cultures, however, can only detect the average behavior of cells in the whole 3D construct. Isolation of cells from specific regions of 3D cultures is possible, but relies on low-throughput techniques such as tissue sectioning and micromanipulation. Based on a procedure reported previously (“cells-in-gels-in-paper” or CiGiP), this paper describes a simple method for culture of arrays of thin planar sections of tissues, either alone or stacked to create more complex 3D tissue structures. This procedure starts with sheets of paper patterned with hydrophobic regions that form 96 hydrophilic zones. Serial spotting of cells suspended in extracellular matrix (ECM) gel onto the patterned paper creates an array of 200 micron-thick slabs of ECM gel (supported mechanically by cellulose fibers) containing cells. Stacking the sheets with zones aligned on top of one another assembles 96 3D multilayer constructs. De-stacking the layers of the 3D culture, by peeling apart the sheets of paper, “sections” all 96 cultures at once. It is, thus, simple to isolate 200-micron-thick cell-containing slabs from each 3D culture in the 96-zone array. Because the 3D cultures are assembled from multiple layers, the number of cells plated initially in each layer determines the spatial distribution of cells in the stacked 3D cultures. This capability made it possible to compare the growth of 3D tumor models of different spatial composition, and to examine the migration of cells in these structures. PMID:21573103

  20. GPU-Accelerated Denoising in 3D (GD3D)

    2013-10-01

    The raw computational power GPU Accelerators enables fast denoising of 3D MR images using bilateral filtering, anisotropic diffusion, and non-local means. This software addresses two facets of this promising application: what tuning is necessary to achieve optimal performance on a modern GPU? And what parameters yield the best denoising results in practice? To answer the first question, the software performs an autotuning step to empirically determine optimal memory blocking on the GPU. To answer themore » second, it performs a sweep of algorithm parameters to determine the combination that best reduces the mean squared error relative to a noiseless reference image.« less

  1. A spherical harmonics intensity model for 3D segmentation and 3D shape analysis of heterochromatin foci.

    PubMed

    Eck, Simon; Wörz, Stefan; Müller-Ott, Katharina; Hahn, Matthias; Biesdorf, Andreas; Schotta, Gunnar; Rippe, Karsten; Rohr, Karl

    2016-08-01

    The genome is partitioned into regions of euchromatin and heterochromatin. The organization of heterochromatin is important for the regulation of cellular processes such as chromosome segregation and gene silencing, and their misregulation is linked to cancer and other diseases. We present a model-based approach for automatic 3D segmentation and 3D shape analysis of heterochromatin foci from 3D confocal light microscopy images. Our approach employs a novel 3D intensity model based on spherical harmonics, which analytically describes the shape and intensities of the foci. The model parameters are determined by fitting the model to the image intensities using least-squares minimization. To characterize the 3D shape of the foci, we exploit the computed spherical harmonics coefficients and determine a shape descriptor. We applied our approach to 3D synthetic image data as well as real 3D static and real 3D time-lapse microscopy images, and compared the performance with that of previous approaches. It turned out that our approach yields accurate 3D segmentation results and performs better than previous approaches. We also show that our approach can be used for quantifying 3D shape differences of heterochromatin foci. PMID:27037463

  2. FR3D: finding local and composite recurrent structural motifs in RNA 3D structures.

    PubMed

    Sarver, Michael; Zirbel, Craig L; Stombaugh, Jesse; Mokdad, Ali; Leontis, Neocles B

    2008-01-01

    New methods are described for finding recurrent three-dimensional (3D) motifs in RNA atomic-resolution structures. Recurrent RNA 3D motifs are sets of RNA nucleotides with similar spatial arrangements. They can be local or composite. Local motifs comprise nucleotides that occur in the same hairpin or internal loop. Composite motifs comprise nucleotides belonging to three or more different RNA strand segments or molecules. We use a base-centered approach to construct efficient, yet exhaustive search procedures using geometric, symbolic, or mixed representations of RNA structure that we implement in a suite of MATLAB programs, "Find RNA 3D" (FR3D). The first modules of FR3D preprocess structure files to classify base-pair and -stacking interactions. Each base is represented geometrically by the position of its glycosidic nitrogen in 3D space and by the rotation matrix that describes its orientation with respect to a common frame. Base-pairing and base-stacking interactions are calculated from the base geometries and are represented symbolically according to the Leontis/Westhof basepairing classification, extended to include base-stacking. These data are stored and used to organize motif searches. For geometric searches, the user supplies the 3D structure of a query motif which FR3D uses to find and score geometrically similar candidate motifs, without regard to the sequential position of their nucleotides in the RNA chain or the identity of their bases. To score and rank candidate motifs, FR3D calculates a geometric discrepancy by rigidly rotating candidates to align optimally with the query motif and then comparing the relative orientations of the corresponding bases in the query and candidate motifs. Given the growing size of the RNA structure database, it is impossible to explicitly compute the discrepancy for all conceivable candidate motifs, even for motifs with less than ten nucleotides. The screening algorithm that we describe finds all candidate motifs whose

  3. Combining GIS with fuzzy multicriteria decision-making for landfill siting in a fast-growing urban region.

    PubMed

    Chang, Ni-Bin; Parvathinathan, G; Breeden, Jeff B

    2008-04-01

    Landfill siting is a difficult, complex, tedious, and protracted process requiring evaluation of many different criteria. This paper presents a fuzzy multicriteria decision analysis alongside with a geospatial analysis for the selection of landfill sites. It employs a two-stage analysis synergistically to form a spatial decision support system (SDSS) for waste management in a fast-growing urban region, south Texas. The first-stage analysis makes use of the thematic maps in Geographical information system (GIS) in conjunction with environmental, biophysical, ecological, and socioeconomic variables leading to support the second-stage analysis using the fuzzy multicriteria decision-making (FMCDM) as a tool. It differs from the conventional methods of integrating GIS with MCDM for landfill selection because the approach follows two sequential steps rather than a full-integrated scheme. The case study was made for the city of Harlingen in south Texas, which is rapidly evolving into a large urban area due to its vantage position near the US-Mexico borderlands. The purpose of GIS was to perform an initial screening process to eliminate unsuitable land followed by utilization of FMCDM method to identify the most suitable site using the information provided by the regional experts with reference to five chosen criteria. Research findings show that the proposed SDSS may aid in recognizing the pros and cons of potential areas for the localization of landfill sites in any study region. Based on initial GIS screening and final FMCDM assessment, "site 1" was selected as the most suitable site for the new landfill in the suburban area of the City of Harlingen. Sensitivity analysis was performed using Monte Carlo simulation where the decision weights associated with all criteria were varied to investigate their relative impacts on the rank ordering of the potential sites in the second stage. Despite variations of the decision weights within a range of 20%, it shows that "site 1

  4. A Clean Adirondack (3-D)

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This is a 3-D anaglyph showing a microscopic image taken of an area measuring 3 centimeters (1.2 inches) across on the rock called Adirondack. The image was taken at Gusev Crater on the 33rd day of the Mars Exploration Rover Spirit's journey (Feb. 5, 2004), after the rover used its rock abrasion tool brush to clean the surface of the rock. Dust, which was pushed off to the side during cleaning, can still be seen to the left and in low areas of the rock.

  5. Making Inexpensive 3-D Models

    NASA Astrophysics Data System (ADS)

    Manos, Harry

    2016-03-01

    Visual aids are important to student learning, and they help make the teacher's job easier. Keeping with the TPT theme of "The Art, Craft, and Science of Physics Teaching," the purpose of this article is to show how teachers, lacking equipment and funds, can construct a durable 3-D model reference frame and a model gravity well tailored to specific class lessons. Most of the supplies are readily available in the home or at school: rubbing alcohol, a rag, two colors of spray paint, art brushes, and masking tape. The cost of these supplies, if you don't have them, is less than 20.

  6. What Lies Ahead (3-D)

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This 3-D cylindrical-perspective mosaic taken by the navigation camera on the Mars Exploration Rover Spirit on sol 82 shows the view south of the large crater dubbed 'Bonneville.' The rover will travel toward the Columbia Hills, seen here at the upper left. The rock dubbed 'Mazatzal' and the hole the rover drilled in to it can be seen at the lower left. The rover's position is referred to as 'Site 22, Position 32.' This image was geometrically corrected to make the horizon appear flat.

  7. Vacant Lander in 3-D

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This 3-D image captured by the Mars Exploration Rover Opportunity's rear hazard-identification camera shows the now-empty lander that carried the rover 283 million miles to Meridiani Planum, Mars. Engineers received confirmation that Opportunity's six wheels successfully rolled off the lander and onto martian soil at 3:01 a.m. PST, January 31, 2004, on the seventh martian day, or sol, of the mission. The rover is approximately 1 meter (3 feet) in front of the lander, facing north.

  8. 3D Printing with Nucleic Acid Adhesives

    PubMed Central

    2015-01-01

    By relying on specific DNA:DNA interactions as a “smart glue”, we have assembled microparticles into a colloidal gel that can hold its shape. This gel can be extruded with a 3D printer to generate centimeter size objects. We show four aspects of this material: (1) The colloidal gel material holds its shape after extrusion. (2) The connectivity among the particles is controlled by the binding behavior between the surface DNA and this mediates some control over the microscale structure. (3) The use of DNA-coated microparticles dramatically reduces the cost of DNA-mediated assembly relative to conventional DNA nanotechnologies and makes this material accessible for macroscale applications. (4) This material can be assembled under biofriendly conditions and can host growing cells within its matrix. The DNA-based control over organization should provide a new means of engineering bioprinted tissues. PMID:25984570

  9. FR3D: finding local and composite recurrent structural motifs in RNA 3D structures

    PubMed Central

    Sarver, Michael; Stombaugh, Jesse; Mokdad, Ali; Leontis, Neocles B.

    2010-01-01

    New methods are described for finding recurrent three-dimensional (3D) motifs in RNA atomic-resolution structures. Recurrent RNA 3D motifs are sets of RNA nucleotides with similar spatial arrangements. They can be local or composite. Local motifs comprise nucleotides that occur in the same hairpin or internal loop. Composite motifs comprise nucleotides belonging to three or more different RNA strand segments or molecules. We use a base-centered approach to construct efficient, yet exhaustive search procedures using geometric, symbolic, or mixed representations of RNA structure that we implement in a suite of MATLAB programs, “Find RNA 3D” (FR3D). The first modules of FR3D preprocess structure files to classify base-pair and -stacking interactions. Each base is represented geometrically by the position of its glycosidic nitrogen in 3D space and by the rotation matrix that describes its orientation with respect to a common frame. Base-pairing and base-stacking interactions are calculated from the base geometries and are represented symbolically according to the Leontis/Westhof basepairing classification, extended to include base-stacking. These data are stored and used to organize motif searches. For geometric searches, the user supplies the 3D structure of a query motif which FR3D uses to find and score geometrically similar candidate motifs, without regard to the sequential position of their nucleotides in the RNA chain or the identity of their bases. To score and rank candidate motifs, FR3D calculates a geometric discrepancy by rigidly rotating candidates to align optimally with the query motif and then comparing the relative orientations of the corresponding bases in the query and candidate motifs. Given the growing size of the RNA structure database, it is impossible to explicitly compute the discrepancy for all conceivable candidate motifs, even for motifs with less than ten nucleotides. The screening algorithm that we describe finds all candidate motifs

  10. Positional Awareness Map 3D (PAM3D)

    NASA Technical Reports Server (NTRS)

    Hoffman, Monica; Allen, Earl L.; Yount, John W.; Norcross, April Louise

    2012-01-01

    The Western Aeronautical Test Range of the National Aeronautics and Space Administration s Dryden Flight Research Center needed to address the aging software and hardware of its current situational awareness display application, the Global Real-Time Interactive Map (GRIM). GRIM was initially developed in the late 1980s and executes on older PC architectures using a Linux operating system that is no longer supported. Additionally, the software is difficult to maintain due to its complexity and loss of developer knowledge. It was decided that a replacement application must be developed or acquired in the near future. The replacement must provide the functionality of the original system, the ability to monitor test flight vehicles in real-time, and add improvements such as high resolution imagery and true 3-dimensional capability. This paper will discuss the process of determining the best approach to replace GRIM, and the functionality and capabilities of the first release of the Positional Awareness Map 3D.

  11. A 3-D chimera grid embedding technique

    NASA Technical Reports Server (NTRS)

    Benek, J. A.; Buning, P. G.; Steger, J. L.

    1985-01-01

    A three-dimensional (3-D) chimera grid-embedding technique is described. The technique simplifies the construction of computational grids about complex geometries. The method subdivides the physical domain into regions which can accommodate easily generated grids. Communication among the grids is accomplished by interpolation of the dependent variables at grid boundaries. The procedures for constructing the composite mesh and the associated data structures are described. The method is demonstrated by solution of the Euler equations for the transonic flow about a wing/body, wing/body/tail, and a configuration of three ellipsoidal bodies.

  12. Harvesting vibrations via 3D phononic isolators

    NASA Astrophysics Data System (ADS)

    Psarobas, Ioannis E.; Yannopapas, Vassilios; Matikas, Theodore E.

    2016-05-01

    We report on the existence of unidirectional phononic band gaps that may span over extended regions of the Brillouin zone and can find application in trapping elastic (acoustic) waves in properly designed multilayered 3D structures. Phononic isolators operate as a result of asymmetrical wave transmission through a slab of a crystallographic phononic structure with broken mirror symmetry. Due to the use of lossless materials in the crystal, the absorption rate is dramatically enhanced when the proposed isolator is placed next to a vibrational harvesting cell. xml:lang="fr"

  13. A modified Seeded Region Growing algorithm for vessel segmentation in breast MRI images for investigating the nature of potential lesions

    NASA Astrophysics Data System (ADS)

    Glotsos, D.; Vassiou, K.; Kostopoulos, S.; Lavdas, El; Kalatzis, I.; Asvestas, P.; Arvanitis, D. L.; Fezoulidis, I. V.; Cavouras, D.

    2014-03-01

    The role of Magnetic Resonance Imaging (MRI) as an alternative protocol for screening of breast cancer has been intensively investigated during the past decade. Preliminary research results have indicated that gadolinium-agent administrative MRI scans may reveal the nature of breast lesions by analyzing the contrast-agent's uptake time. In this study, we attempt to deduce the same conclusion, however, from a different perspective by investigating, using image processing, the vascular network of the breast at two different time intervals following the administration of gadolinium. Twenty cases obtained from a 3.0-T MRI system (SIGNA HDx; GE Healthcare) were included in the study. A new modification of the Seeded Region Growing (SRG) algorithm was used to segment vessels from surrounding background. Delineated vessels were investigated by means of their topology, morphology and texture. Results have shown that it is possible to estimate the nature of the lesions with approximately 94.4% accuracy, thus, it may be claimed that the breast vascular network does encodes useful, patterned, information, which can be used for characterizing breast lesions.

  14. Arsenic concentrations in paddy soil and rice and health implications for major rice-growing regions of Cambodia.

    PubMed

    Seyfferth, Angelia L; McCurdy, Sarah; Schaefer, Michael V; Fendorf, Scott

    2014-05-01

    Despite the global importance of As in rice, research has primarily focused on Bangladesh, India, China, and the United States with limited attention given to other countries. Owing to both indigenous As within the soil and the possible increases arising from the onset of irrigation with groundwater, an assessment of As in rice within Cambodia is needed, which offers a "base-case" comparison against sediments of similar origin that comprise rice paddy soils where As-contaminated water is used for irrigation (e.g., Bangladesh). Here, we evaluated the As content of rice from five provinces (Kandal, Prey Veng, Battambang, Banteay Meanchey, and Kampong Thom) in the rice-growing regions of Cambodia and coupled that data to soil-chemical factors based on extractions of paddy soil collected and processed under anoxic conditions. At total soil As concentrations ranging 0.8 to 18 μg g(-1), total grain As concentrations averaged 0.2 μg g(-1) and ranged from 0.1 to 0.37 with Banteay Meanchey rice having significantly higher values than Prey Veng rice. Overall, soil-extractable concentrations of As, Fe, P, and Si and total As were poor predictors of grain As concentrations. While biogeochemical factors leading to reduction of As(V)-bearing Fe(III) oxides are likely most important for predicting plant-available As, husk and straw As concentrations were the most significant predictors of grain-As levels among our measured parameters. PMID:24712677

  15. 3D Printable Graphene Composite

    NASA Astrophysics Data System (ADS)

    Wei, Xiaojun; Li, Dong; Jiang, Wei; Gu, Zheming; Wang, Xiaojuan; Zhang, Zengxing; Sun, Zhengzong

    2015-07-01

    In human being’s history, both the Iron Age and Silicon Age thrived after a matured massive processing technology was developed. Graphene is the most recent superior material which could potentially initialize another new material Age. However, while being exploited to its full extent, conventional processing methods fail to provide a link to today’s personalization tide. New technology should be ushered in. Three-dimensional (3D) printing fills the missing linkage between graphene materials and the digital mainstream. Their alliance could generate additional stream to push the graphene revolution into a new phase. Here we demonstrate for the first time, a graphene composite, with a graphene loading up to 5.6 wt%, can be 3D printable into computer-designed models. The composite’s linear thermal coefficient is below 75 ppm·°C-1 from room temperature to its glass transition temperature (Tg), which is crucial to build minute thermal stress during the printing process.

  16. 3D acoustic atmospheric tomography

    NASA Astrophysics Data System (ADS)

    Rogers, Kevin; Finn, Anthony

    2014-10-01

    This paper presents a method for tomographically reconstructing spatially varying 3D atmospheric temperature profiles and wind velocity fields based. Measurements of the acoustic signature measured onboard a small Unmanned Aerial Vehicle (UAV) are compared to ground-based observations of the same signals. The frequency-shifted signal variations are then used to estimate the acoustic propagation delay between the UAV and the ground microphones, which are also affected by atmospheric temperature and wind speed vectors along each sound ray path. The wind and temperature profiles are modelled as the weighted sum of Radial Basis Functions (RBFs), which also allow local meteorological measurements made at the UAV and ground receivers to supplement any acoustic observations. Tomography is used to provide a full 3D reconstruction/visualisation of the observed atmosphere. The technique offers observational mobility under direct user control and the capacity to monitor hazardous atmospheric environments, otherwise not justifiable on the basis of cost or risk. This paper summarises the tomographic technique and reports on the results of simulations and initial field trials. The technique has practical applications for atmospheric research, sound propagation studies, boundary layer meteorology, air pollution measurements, analysis of wind shear, and wind farm surveys.

  17. 3D Printed Bionic Ears

    PubMed Central

    Mannoor, Manu S.; Jiang, Ziwen; James, Teena; Kong, Yong Lin; Malatesta, Karen A.; Soboyejo, Winston O.; Verma, Naveen; Gracias, David H.; McAlpine, Michael C.

    2013-01-01

    The ability to three-dimensionally interweave biological tissue with functional electronics could enable the creation of bionic organs possessing enhanced functionalities over their human counterparts. Conventional electronic devices are inherently two-dimensional, preventing seamless multidimensional integration with synthetic biology, as the processes and materials are very different. Here, we present a novel strategy for overcoming these difficulties via additive manufacturing of biological cells with structural and nanoparticle derived electronic elements. As a proof of concept, we generated a bionic ear via 3D printing of a cell-seeded hydrogel matrix in the precise anatomic geometry of a human ear, along with an intertwined conducting polymer consisting of infused silver nanoparticles. This allowed for in vitro culturing of cartilage tissue around an inductive coil antenna in the ear, which subsequently enables readout of inductively-coupled signals from cochlea-shaped electrodes. The printed ear exhibits enhanced auditory sensing for radio frequency reception, and complementary left and right ears can listen to stereo audio music. Overall, our approach suggests a means to intricately merge biologic and nanoelectronic functionalities via 3D printing. PMID:23635097

  18. 3-D Relativistic MHD Simulations

    NASA Astrophysics Data System (ADS)

    Nishikaw, K.-I.; Frank, J.; Christodoulou, D. M.; Koide, S.; Sakai, J.-I.; Sol, H.; Mutel, R. L.

    1998-12-01

    We present 3-D numerical simulations of moderately hot, supersonic jets propagating initially along or obliquely to the field lines of a denser magnetized background medium with Lorentz factors of W=4.56 and evolving in a four-dimensional spacetime. The new results are understood as follows: Relativistic simulations have consistently shown that these jets are effectively heavy and so they do not suffer substantial momentum losses and are not decelerated as efficiently as their nonrelativistic counterparts. In addition, the ambient magnetic field, however strong, can be pushed aside with relative ease by the beam, provided that the degrees of freedom associated with all three spatial dimensions are followed self-consistently in the simulations. This effect is analogous to pushing Japanese ``noren'' or vertical Venetian blinds out of the way while the slats are allowed to bend in 3-D space rather than as a 2-D slab structure. We also simulate jets with the more realistic initial conditions for injecting jets for helical mangetic field, perturbed density, velocity, and internal energy, which are supposed to be caused in the process of jet generation. Three possible explanations for the observed variability are (i) tidal disruption of a star falling into the black hole, (ii) instabilities in the relativistic accretion disk, and (iii) jet-related PRocesses. New results will be reported at the meeting.

  19. 3D printed bionic ears.

    PubMed

    Mannoor, Manu S; Jiang, Ziwen; James, Teena; Kong, Yong Lin; Malatesta, Karen A; Soboyejo, Winston O; Verma, Naveen; Gracias, David H; McAlpine, Michael C

    2013-06-12

    The ability to three-dimensionally interweave biological tissue with functional electronics could enable the creation of bionic organs possessing enhanced functionalities over their human counterparts. Conventional electronic devices are inherently two-dimensional, preventing seamless multidimensional integration with synthetic biology, as the processes and materials are very different. Here, we present a novel strategy for overcoming these difficulties via additive manufacturing of biological cells with structural and nanoparticle derived electronic elements. As a proof of concept, we generated a bionic ear via 3D printing of a cell-seeded hydrogel matrix in the anatomic geometry of a human ear, along with an intertwined conducting polymer consisting of infused silver nanoparticles. This allowed for in vitro culturing of cartilage tissue around an inductive coil antenna in the ear, which subsequently enables readout of inductively-coupled signals from cochlea-shaped electrodes. The printed ear exhibits enhanced auditory sensing for radio frequency reception, and complementary left and right ears can listen to stereo audio music. Overall, our approach suggests a means to intricately merge biologic and nanoelectronic functionalities via 3D printing. PMID:23635097

  20. 3D Printable Graphene Composite

    PubMed Central

    Wei, Xiaojun; Li, Dong; Jiang, Wei; Gu, Zheming; Wang, Xiaojuan; Zhang, Zengxing; Sun, Zhengzong

    2015-01-01

    In human being’s history, both the Iron Age and Silicon Age thrived after a matured massive processing technology was developed. Graphene is the most recent superior material which could potentially initialize another new material Age. However, while being exploited to its full extent, conventional processing methods fail to provide a link to today’s personalization tide. New technology should be ushered in. Three-dimensional (3D) printing fills the missing linkage between graphene materials and the digital mainstream. Their alliance could generate additional stream to push the graphene revolution into a new phase. Here we demonstrate for the first time, a graphene composite, with a graphene loading up to 5.6 wt%, can be 3D printable into computer-designed models. The composite’s linear thermal coefficient is below 75 ppm·°C−1 from room temperature to its glass transition temperature (Tg), which is crucial to build minute thermal stress during the printing process. PMID:26153673

  1. 3D medical thermography device

    NASA Astrophysics Data System (ADS)

    Moghadam, Peyman

    2015-05-01

    In this paper, a novel handheld 3D medical thermography system is introduced. The proposed system consists of a thermal-infrared camera, a color camera and a depth camera rigidly attached in close proximity and mounted on an ergonomic handle. As a practitioner holding the device smoothly moves it around the human body parts, the proposed system generates and builds up a precise 3D thermogram model by incorporating information from each new measurement in real-time. The data is acquired in motion, thus it provides multiple points of view. When processed, these multiple points of view are adaptively combined by taking into account the reliability of each individual measurement which can vary due to a variety of factors such as angle of incidence, distance between the device and the subject and environmental sensor data or other factors influencing a confidence of the thermal-infrared data when captured. Finally, several case studies are presented to support the usability and performance of the proposed system.

  2. LOTT RANCH 3D PROJECT

    SciTech Connect

    Larry Lawrence; Bruce Miller

    2004-09-01

    The Lott Ranch 3D seismic prospect located in Garza County, Texas is a project initiated in September of 1991 by the J.M. Huber Corp., a petroleum exploration and production company. By today's standards the 126 square mile project does not seem monumental, however at the time it was conceived it was the most intensive land 3D project ever attempted. Acquisition began in September of 1991 utilizing GEO-SEISMIC, INC., a seismic data contractor. The field parameters were selected by J.M. Huber, and were of a radical design. The recording instruments used were GeoCor IV amplifiers designed by Geosystems Inc., which record the data in signed bit format. It would not have been practical, if not impossible, to have processed the entire raw volume with the tools available at that time. The end result was a dataset that was thought to have little utility due to difficulties in processing the field data. In 1997, Yates Energy Corp. located in Roswell, New Mexico, formed a partnership to further develop the project. Through discussions and meetings with Pinnacle Seismic, it was determined that the original Lott Ranch 3D volume could be vastly improved upon reprocessing. Pinnacle Seismic had shown the viability of improving field-summed signed bit data on smaller 2D and 3D projects. Yates contracted Pinnacle Seismic Ltd. to perform the reprocessing. This project was initiated with high resolution being a priority. Much of the potential resolution was lost through the initial summing of the field data. Modern computers that are now being utilized have tremendous speed and storage capacities that were cost prohibitive when this data was initially processed. Software updates and capabilities offer a variety of quality control and statics resolution, which are pertinent to the Lott Ranch project. The reprocessing effort was very successful. The resulting processed data-set was then interpreted using modern PC-based interpretation and mapping software. Production data, log data

  3. Sodium 3D COncentration MApping (COMA 3D) using 23Na and proton MRI

    NASA Astrophysics Data System (ADS)

    Truong, Milton L.; Harrington, Michael G.; Schepkin, Victor D.; Chekmenev, Eduard Y.

    2014-10-01

    Functional changes of sodium 3D MRI signals were converted into millimolar concentration changes using an open-source fully automated MATLAB toolbox. These concentration changes are visualized via 3D sodium concentration maps, and they are overlaid over conventional 3D proton images to provide high-resolution co-registration for easy correlation of functional changes to anatomical regions. Nearly 5000/h concentration maps were generated on a personal computer (ca. 2012) using 21.1 T 3D sodium MRI brain images of live rats with spatial resolution of 0.8 × 0.8 × 0.8 mm3 and imaging matrices of 60 × 60 × 60. The produced concentration maps allowed for non-invasive quantitative measurement of in vivo sodium concentration in the normal rat brain as a functional response to migraine-like conditions. The presented work can also be applied to sodium-associated changes in migraine, cancer, and other metabolic abnormalities that can be sensed by molecular imaging. The MATLAB toolbox allows for automated image analysis of the 3D images acquired on the Bruker platform and can be extended to other imaging platforms. The resulting images are presented in a form of series of 2D slices in all three dimensions in native MATLAB and PDF formats. The following is provided: (a) MATLAB source code for image processing, (b) the detailed processing procedures, (c) description of the code and all sub-routines, (d) example data sets of initial and processed data. The toolbox can be downloaded at: http://www.vuiis.vanderbilt.edu/~truongm/COMA3D/.

  4. Sodium 3D COncentration MApping (COMA 3D) using (23)Na and proton MRI.

    PubMed

    Truong, Milton L; Harrington, Michael G; Schepkin, Victor D; Chekmenev, Eduard Y

    2014-10-01

    Functional changes of sodium 3D MRI signals were converted into millimolar concentration changes using an open-source fully automated MATLAB toolbox. These concentration changes are visualized via 3D sodium concentration maps, and they are overlaid over conventional 3D proton images to provide high-resolution co-registration for easy correlation of functional changes to anatomical regions. Nearly 5000/h concentration maps were generated on a personal computer (ca. 2012) using 21.1T 3D sodium MRI brain images of live rats with spatial resolution of 0.8×0.8×0.8 mm(3) and imaging matrices of 60×60×60. The produced concentration maps allowed for non-invasive quantitative measurement of in vivo sodium concentration in the normal rat brain as a functional response to migraine-like conditions. The presented work can also be applied to sodium-associated changes in migraine, cancer, and other metabolic abnormalities that can be sensed by molecular imaging. The MATLAB toolbox allows for automated image analysis of the 3D images acquired on the Bruker platform and can be extended to other imaging platforms. The resulting images are presented in a form of series of 2D slices in all three dimensions in native MATLAB and PDF formats. The following is provided: (a) MATLAB source code for image processing, (b) the detailed processing procedures, (c) description of the code and all sub-routines, (d) example data sets of initial and processed data. The toolbox can be downloaded at: http://www.vuiis.vanderbilt.edu/~truongm/COMA3D/. PMID:25261742

  5. Sodium 3D COncentration MApping (COMA 3D) Using 23Na and Proton MRI

    PubMed Central

    Truong, Milton L.; Harrington, Michael G.; Schepkin, Victor D.; Chekmenev, Eduard Y.

    2014-01-01

    Functional changes of sodium 3D MRI signals were converted into millimolar concentration changes using an open-source fully automated MATLAB toolbox. These concentration changes are visualized via 3D sodium concentration maps, and they are overlaid over conventional 3D proton images to provide high-resolution co-registration for easy correlation of functional changes to anatomical regions. Nearly 5000/hour concentration maps were generated on a personal computer (ca. 2012) using 21.1 T 3D sodium MRI brain images of live rats with spatial resolution of 0.8×0.8×0.8 mm3 and imaging matrices of 60×60×60. The produced concentration maps allowed for non-invasive quantitative measurement of in vivo sodium concentration in the normal rat brain as a functional response to migraine-like conditions. The presented work can also be applied to sodium-associated changes in migraine, cancer, and other metabolic abnormalities that can be sensed by molecular imaging. The MATLAB toolbox allows for automated image analysis of the 3D images acquired on the Bruker platform and can be extended to other imaging platforms. The resulting images are presented in a form of series of 2D slices in all three dimensions in native MATLAB and PDF formats. The following is provided: (a) MATLAB source code for image processing, (b) the detailed processing procedures, (c) description of the code and all sub-routines, (d) example data sets of initial and processed data. The toolbox can be downloaded at: http://www.vuiis.vanderbilt.edu/~truongm/COMA3D/ PMID:25261742

  6. Fully 3D refraction correction dosimetry system

    NASA Astrophysics Data System (ADS)

    Manjappa, Rakesh; Sharath Makki, S.; Kumar, Rajesh; Mohan Vasu, Ram; Kanhirodan, Rajan

    2016-02-01

    The irradiation of selective regions in a polymer gel dosimeter results in an increase in optical density and refractive index (RI) at those regions. An optical tomography-based dosimeter depends on rayline path through the dosimeter to estimate and reconstruct the dose distribution. The refraction of light passing through a dose region results in artefacts in the reconstructed images. These refraction errors are dependant on the scanning geometry and collection optics. We developed a fully 3D image reconstruction algorithm, algebraic reconstruction technique-refraction correction (ART-rc) that corrects for the refractive index mismatches present in a gel dosimeter scanner not only at the boundary, but also for any rayline refraction due to multiple dose regions inside the dosimeter. In this study, simulation and experimental studies have been carried out to reconstruct a 3D dose volume using 2D CCD measurements taken for various views. The study also focuses on the effectiveness of using different refractive-index matching media surrounding the gel dosimeter. Since the optical density is assumed to be low for a dosimeter, the filtered backprojection is routinely used for reconstruction. We carry out the reconstructions using conventional algebraic reconstruction (ART) and refractive index corrected ART (ART-rc) algorithms. The reconstructions based on FDK algorithm for cone-beam tomography has also been carried out for comparison. Line scanners and point detectors, are used to obtain reconstructions plane by plane. The rays passing through dose region with a RI mismatch does not reach the detector in the same plane depending on the angle of incidence and RI. In the fully 3D scanning setup using 2D array detectors, light rays that undergo refraction are still collected and hence can still be accounted for in the reconstruction algorithm. It is found that, for the central region of the dosimeter, the usable radius using ART-rc algorithm with water as RI matched

  7. Fully 3D refraction correction dosimetry system.

    PubMed

    Manjappa, Rakesh; Makki, S Sharath; Kumar, Rajesh; Vasu, Ram Mohan; Kanhirodan, Rajan

    2016-02-21

    The irradiation of selective regions in a polymer gel dosimeter results in an increase in optical density and refractive index (RI) at those regions. An optical tomography-based dosimeter depends on rayline path through the dosimeter to estimate and reconstruct the dose distribution. The refraction of light passing through a dose region results in artefacts in the reconstructed images. These refraction errors are dependant on the scanning geometry and collection optics. We developed a fully 3D image reconstruction algorithm, algebraic reconstruction technique-refraction correction (ART-rc) that corrects for the refractive index mismatches present in a gel dosimeter scanner not only at the boundary, but also for any rayline refraction due to multiple dose regions inside the dosimeter. In this study, simulation and experimental studies have been carried out to reconstruct a 3D dose volume using 2D CCD measurements taken for various views. The study also focuses on the effectiveness of using different refractive-index matching media surrounding the gel dosimeter. Since the optical density is assumed to be low for a dosimeter, the filtered backprojection is routinely used for reconstruction. We carry out the reconstructions using conventional algebraic reconstruction (ART) and refractive index corrected ART (ART-rc) algorithms. The reconstructions based on FDK algorithm for cone-beam tomography has also been carried out for comparison. Line scanners and point detectors, are used to obtain reconstructions plane by plane. The rays passing through dose region with a RI mismatch does not reach the detector in the same plane depending on the angle of incidence and RI. In the fully 3D scanning setup using 2D array detectors, light rays that undergo refraction are still collected and hence can still be accounted for in the reconstruction algorithm. It is found that, for the central region of the dosimeter, the usable radius using ART-rc algorithm with water as RI matched

  8. The upcoming 3D-printing revolution in microfluidics.

    PubMed

    Bhattacharjee, Nirveek; Urrios, Arturo; Kang, Shawn; Folch, Albert

    2016-05-21

    In the last two decades, the vast majority of microfluidic systems have been built in poly(dimethylsiloxane) (PDMS) by soft lithography, a technique based on PDMS micromolding. A long list of key PDMS properties have contributed to the success of soft lithography: PDMS is biocompatible, elastomeric, transparent, gas-permeable, water-impermeable, fairly inexpensive, copyright-free, and rapidly prototyped with high precision using simple procedures. However, the fabrication process typically involves substantial human labor, which tends to make PDMS devices difficult to disseminate outside of research labs, and the layered molding limits the 3D complexity of the devices that can be produced. 3D-printing has recently attracted attention as a way to fabricate microfluidic systems due to its automated, assembly-free 3D fabrication, rapidly decreasing costs, and fast-improving resolution and throughput. Resins with properties approaching those of PDMS are being developed. Here we review past and recent efforts in 3D-printing of microfluidic systems. We compare the salient features of PDMS molding with those of 3D-printing and we give an overview of the critical barriers that have prevented the adoption of 3D-printing by microfluidic developers, namely resolution, throughput, and resin biocompatibility. We also evaluate the various forces that are persuading researchers to abandon PDMS molding in favor of 3D-printing in growing numbers. PMID:27101171

  9. Improving 3d Spatial Queries Search: Newfangled Technique of Space Filling Curves in 3d City Modeling

    NASA Astrophysics Data System (ADS)

    Uznir, U.; Anton, F.; Suhaibah, A.; Rahman, A. A.; Mioc, D.

    2013-09-01

    The advantages of three dimensional (3D) city models can be seen in various applications including photogrammetry, urban and regional planning, computer games, etc.. They expand the visualization and analysis capabilities of Geographic Information Systems on cities, and they can be developed using web standards. However, these 3D city models consume much more storage compared to two dimensional (2D) spatial data. They involve extra geometrical and topological information together with semantic data. Without a proper spatial data clustering method and its corresponding spatial data access method, retrieving portions of and especially searching these 3D city models, will not be done optimally. Even though current developments are based on an open data model allotted by the Open Geospatial Consortium (OGC) called CityGML, its XML-based structure makes it challenging to cluster the 3D urban objects. In this research, we propose an opponent data constellation technique of space-filling curves (3D Hilbert curves) for 3D city model data representation. Unlike previous methods, that try to project 3D or n-dimensional data down to 2D or 3D using Principal Component Analysis (PCA) or Hilbert mappings, in this research, we extend the Hilbert space-filling curve to one higher dimension for 3D city model data implementations. The query performance was tested using a CityGML dataset of 1,000 building blocks and the results are presented in this paper. The advantages of implementing space-filling curves in 3D city modeling will improve data retrieval time by means of optimized 3D adjacency, nearest neighbor information and 3D indexing. The Hilbert mapping, which maps a subinterval of the [0, 1] interval to the corresponding portion of the d-dimensional Hilbert's curve, preserves the Lebesgue measure and is Lipschitz continuous. Depending on the applications, several alternatives are possible in order to cluster spatial data together in the third dimension compared to its

  10. A Multi-Level Approach to Modeling Rapidly Growing Mega-Regions as a Coupled Human-Natural System

    NASA Astrophysics Data System (ADS)

    Koch, J. A.; Tang, W.; Meentemeyer, R. K.

    2013-12-01

    The FUTure Urban-Regional Environment Simulation (FUTURES) integrates information on nonstationary drivers of land change (per capita land area demand, site suitability, and spatial structure of conversion events) into spatial-temporal projections of changes in landscape patterns (Meentemeyer et al., 2013). One striking feature of FUTURES is its patch-growth algorithm that includes feedback effects of former development events across several temporal and spatial scales: cell-level transition events are aggregated into patches of land change and their further growth is based on empirically derived parameters controlling its size, shape, and dispersion. Here, we augment the FUTURES modeling framework by expanding its multilevel structure and its representation of human decision making. The new modeling framework is hierarchically organized as nested subsystems including the latest theory on telecouplings in coupled human-natural systems (Liu et al., 2013). Each subsystem represents a specific level of spatial scale and embraces agents that have decision making authority at a particular level. The subsystems are characterized with regard to their spatial representation and are connected via flows of information (e.g. regulations and policies) or material (e.g. population migration). To provide a modeling framework that is applicable to a wide range of settings and geographical regions and to keep it computationally manageable, we implement a 'zooming factor' that allows to enable or disable subsystems (and hence the represented processes), based on the extent of the study region. The implementation of the FUTURES modeling framework for a specific case study follows the observational modeling approach described in Grimm et al. (2005), starting from the analysis of empirical data in order to capture the processes relevant for specific scales and to allow a rigorous calibration and validation of the model application. In this paper, we give an introduction to the basic

  11. 3D Printing of Graphene Aerogels.

    PubMed

    Zhang, Qiangqiang; Zhang, Feng; Medarametla, Sai Pradeep; Li, Hui; Zhou, Chi; Lin, Dong

    2016-04-01

    3D printing of a graphene aerogel with true 3D overhang structures is highlighted. The aerogel is fabricated by combining drop-on-demand 3D printing and freeze casting. The water-based GO ink is ejected and freeze-cast into designed 3D structures. The lightweight (<10 mg cm(-3) ) 3D printed graphene aerogel presents superelastic and high electrical conduction. PMID:26861680

  12. Climatic warming above the Arctic Circle: are there trends in timing and length of the thermal growing season in Murmansk Region (Russia) between 1951 and 2012?

    NASA Astrophysics Data System (ADS)

    Blinova, Ilona; Chmielewski, Frank-Michael

    2015-06-01

    Anomalies in the timing of the thermal growing season have become obvious in the NE part of Fennoscandia since 2000. They are in accordance with climatic changes reported for Europe and Fennoscandia. The actual length of the growing season reached 120 days on average, onset on 30 May and ending on 27 September (1981-2010). Shifts in the timing of the growing season and its mean prolongation by 18.5 days/62a are demonstrated for Murmansk Region (1951-2012). In this period, the onset of the growing season advanced by 7.1 days/62a, while the end was extended by 11.4 days/62a. The delay in the end of the growing season is similar to the entire Fennoscandian pattern but it has not been detected in the rest of Europe. The regional pattern of climatic regimes in Murmansk Region remained stable in comparison with earlier climatic maps (1971). However, the actual shifts in the timing of the growing season were more pronounced in colder (oceanic and mountainous) parts. Recent climatic trends could influence the retreat of the tundra zone and changes in the forest line. Losses of tundra biodiversity and enrichment of the northern taiga by southern species could be expected from present climatic trends.

  13. Climatic warming above the Arctic Circle: are there trends in timing and length of the thermal growing season in Murmansk Region (Russia) between 1951 and 2012?

    PubMed

    Blinova, Ilona; Chmielewski, Frank-Michael

    2015-06-01

    Anomalies in the timing of the thermal growing season have become obvious in the NE part of Fennoscandia since 2000. They are in accordance with climatic changes reported for Europe and Fennoscandia. The actual length of the growing season reached 120 days on average, onset on 30 May and ending on 27 September (1981-2010). Shifts in the timing of the growing season and its mean prolongation by 18.5 days/62a are demonstrated for Murmansk Region (1951-2012). In this period, the onset of the growing season advanced by 7.1 days/62a, while the end was extended by 11.4 days/62a. The delay in the end of the growing season is similar to the entire Fennoscandian pattern but it has not been detected in the rest of Europe. The regional pattern of climatic regimes in Murmansk Region remained stable in comparison with earlier climatic maps (1971). However, the actual shifts in the timing of the growing season were more pronounced in colder (oceanic and mountainous) parts. Recent climatic trends could influence the retreat of the tundra zone and changes in the forest line. Losses of tundra biodiversity and enrichment of the northern taiga by southern species could be expected from present climatic trends. PMID:25155187

  14. 3D Elastic Wavefield Tomography

    NASA Astrophysics Data System (ADS)

    Guasch, L.; Warner, M.; Stekl, I.; Umpleby, A.; Shah, N.

    2010-12-01

    Wavefield tomography, or waveform inversion, aims to extract the maximum information from seismic data by matching trace by trace the response of the solid earth to seismic waves using numerical modelling tools. Its first formulation dates from the early 80's, when Albert Tarantola developed a solid theoretical basis that is still used today with little change. Due to computational limitations, the application of the method to 3D problems has been unaffordable until a few years ago, and then only under the acoustic approximation. Although acoustic wavefield tomography is widely used, a complete solution of the seismic inversion problem requires that we account properly for the physics of wave propagation, and so must include elastic effects. We have developed a 3D tomographic wavefield inversion code that incorporates the full elastic wave equation. The bottle neck of the different implementations is the forward modelling algorithm that generates the synthetic data to be compared with the field seismograms as well as the backpropagation of the residuals needed to form the direction update of the model parameters. Furthermore, one or two extra modelling runs are needed in order to calculate the step-length. Our approach uses a FD scheme explicit time-stepping by finite differences that are 4th order in space and 2nd order in time, which is a 3D version of the one developed by Jean Virieux in 1986. We chose the time domain because an explicit time scheme is much less demanding in terms of memory than its frequency domain analogue, although the discussion of wich domain is more efficient still remains open. We calculate the parameter gradients for Vp and Vs by correlating the normal and shear stress wavefields respectively. A straightforward application would lead to the storage of the wavefield at all grid points at each time-step. We tackled this problem using two different approaches. The first one makes better use of resources for small models of dimension equal

  15. Highway 3D model from image and lidar data

    NASA Astrophysics Data System (ADS)

    Chen, Jinfeng; Chu, Henry; Sun, Xiaoduan

    2014-05-01

    We present a new method of highway 3-D model construction developed based on feature extraction in highway images and LIDAR data. We describe the processing road coordinate data that connect the image frames to the coordinates of the elevation data. Image processing methods are used to extract sky, road, and ground regions as well as significant objects (such as signs and building fronts) in the roadside for the 3D model. LIDAR data are interpolated and processed to extract the road lanes as well as other features such as trees, ditches, and elevated objects to form the 3D model. 3D geometry reasoning is used to match the image features to the 3D model. Results from successive frames are integrated to improve the final model.

  16. Development of visual 3D virtual environment for control software

    NASA Technical Reports Server (NTRS)

    Hirose, Michitaka; Myoi, Takeshi; Amari, Haruo; Inamura, Kohei; Stark, Lawrence

    1991-01-01

    Virtual environments for software visualization may enable complex programs to be created and maintained. A typical application might be for control of regional electric power systems. As these encompass broader computer networks than ever, construction of such systems becomes very difficult. Conventional text-oriented environments are useful in programming individual processors. However, they are obviously insufficient to program a large and complicated system, that includes large numbers of computers connected to each other; such programming is called 'programming in the large.' As a solution for this problem, the authors are developing a graphic programming environment wherein one can visualize complicated software in virtual 3D world. One of the major features of the environment is the 3D representation of concurrent process. 3D representation is used to supply both network-wide interprocess programming capability (capability for 'programming in the large') and real-time programming capability. The authors' idea is to fuse both the block diagram (which is useful to check relationship among large number of processes or processors) and the time chart (which is useful to check precise timing for synchronization) into a single 3D space. The 3D representation gives us a capability for direct and intuitive planning or understanding of complicated relationship among many concurrent processes. To realize the 3D representation, a technology to enable easy handling of virtual 3D object is a definite necessity. Using a stereo display system and a gesture input device (VPL DataGlove), our prototype of the virtual workstation has been implemented. The workstation can supply the 'sensation' of the virtual 3D space to a programmer. Software for the 3D programming environment is implemented on the workstation. According to preliminary assessments, a 50 percent reduction of programming effort is achieved by using the virtual 3D environment. The authors expect that the 3D

  17. Abundance and Diversity of Wild Bees (Hymenoptera: Apoidea) Found in Lowbush Blueberry Growing Regions of Downeast Maine.

    PubMed

    Bushmann, Sara L; Drummond, Francis A

    2015-08-01

    Insect-mediated pollination is critical for lowbush blueberry (Ericaceae: Vaccinium angustifolium Aiton) fruit development. Past research shows a persistent presence of wild bees (Hymenoptera: Apoidea) providing pollination services even when commercial pollinators are present. We undertook the study to 1) provide a description of bee communities found in lowbush blueberry-growing regions, 2) identify field characteristics or farm management practices that influence those communities, 3) identify key wild bee pollinators that provide pollination services for the blueberry crop, and 4) identify non-crop plants found within the cropping system that provide forage for wild bees. During a 4-year period, we collected solitary and eusocial bees in over 40 fields during and after blueberry bloom, determining a management description for each field. We collected 4,474 solitary bees representing 124 species and 1,315 summer bumble bees representing nine species. No bumble bee species were previously unknown in Maine, yet we document seven solitary bee species new for the state. These include species of the genera Nomada, Lasioglossum, Calliopsis, and Augochloropsis. No field characteristic or farm management practice related to bee community structure, except bumble bee species richness was higher in certified organic fields. Pollen analysis determined scopal loads of 67-99% ericaceous pollen carried by five species of Andrena. Our data suggest two native ericaceous plants, Kalmia angustifolia L. and Gaylussacia baccata (Wangenheim), provide important alternative floral resources. We conclude that Maine blueberry croplands are populated with a species-rich bee community that fluctuates in time and space. We suggest growers develop and maintain wild bee forage and nest sites. PMID:26314043

  18. Improving Semantic Updating Method on 3d City Models Using Hybrid Semantic-Geometric 3d Segmentation Technique

    NASA Astrophysics Data System (ADS)

    Sharkawi, K.-H.; Abdul-Rahman, A.

    2013-09-01

    Cities and urban areas entities such as building structures are becoming more complex as the modern human civilizations continue to evolve. The ability to plan and manage every territory especially the urban areas is very important to every government in the world. Planning and managing cities and urban areas based on printed maps and 2D data are getting insufficient and inefficient to cope with the complexity of the new developments in big cities. The emergence of 3D city models have boosted the efficiency in analysing and managing urban areas as the 3D data are proven to represent the real world object more accurately. It has since been adopted as the new trend in buildings and urban management and planning applications. Nowadays, many countries around the world have been generating virtual 3D representation of their major cities. The growing interest in improving the usability of 3D city models has resulted in the development of various tools for analysis based on the 3D city models. Today, 3D city models are generated for various purposes such as for tourism, location-based services, disaster management and urban planning. Meanwhile, modelling 3D objects are getting easier with the emergence of the user-friendly tools for 3D modelling available in the market. Generating 3D buildings with high accuracy also has become easier with the availability of airborne Lidar and terrestrial laser scanning equipments. The availability and accessibility to this technology makes it more sensible to analyse buildings in urban areas using 3D data as it accurately represent the real world objects. The Open Geospatial Consortium (OGC) has accepted CityGML specifications as one of the international standards for representing and exchanging spatial data, making it easier to visualize, store and manage 3D city models data efficiently. CityGML able to represents the semantics, geometry, topology and appearance of 3D city models in five well-defined Level-of-Details (LoD), namely LoD0

  19. Segmentation and reconstruction of cerebral vessels from 3D rotational angiography for AVM embolization planning.

    PubMed

    Li, Fan; Chenoune, Yasmina; Ouenniche, Meriem; Blanc, Raphaël; Petit, Eric

    2014-01-01

    Diagnosis and computer-guided therapy of cerebral Arterio-Venous Malformations (AVM) require an accurate understanding of the cerebral vascular network both from structural and biomechanical point of view. We propose to obtain such information by analyzing three Dimensional Rotational Angiography (3DRA) images. In this paper, we describe a two-step process allowing 1) the 3D automatic segmentation of cerebral vessels from 3DRA images using a region-growing based algorithm and 2) the reconstruction of the segmented vessels using the 3D constrained Delaunay Triangulation method. The proposed algorithm was successfully applied to reconstruct cerebral blood vessels from ten datasets of 3DRA images. This software allows the neuroradiologist to separately analyze cerebral vessels for pre-operative interventions planning and therapeutic decision making. PMID:25571245

  20. Detection and Reconstruction of an Implicit Boundary Surface by Adaptively Expanding A Small Surface Patch in a 3D Image.

    PubMed

    Wang, Lisheng; Wang, Pai; Cheng, Liuhang; Ma, Yu; Wu, Shenzhi; Wang, Yu-Ping; Xu, Zongben

    2014-11-01

    In this paper we propose a novel and easy to use 3D reconstruction method. With the method, users only need to specify a small boundary surface patch in a 2D section image, and then an entire continuous implicit boundary surface (CIBS) can be automatically reconstructed from a 3D image. In the method, a hierarchical tracing strategy is used to grow the known boundary surface patch gradually in the 3D image. An adaptive detection technique is applied to detect boundary surface patches from different local regions. The technique is based on both context dependence and adaptive contrast detection as in the human vision system. A recognition technique is used to distinguish true boundary surface patches from the false ones in different cubes. By integrating these different approaches, a high-resolution CIBS model can be automatically reconstructed by adaptively expanding the small boundary surface patch in the 3D image. The effectiveness of our method is demonstrated by its applications to a variety of real 3D images, where the CIBS with complex shapes/branches and with varying gray values/gradient magnitudes can be well reconstructed. Our method is easy to use, which provides a valuable tool for 3D image visualization and analysis as needed in many applications. PMID:26355329

  1. Spatiotemporal properties of growing season indices during 1961-2010 and possible association with agroclimatological regionalization of dominant crops in Xinjiang, China

    NASA Astrophysics Data System (ADS)

    Ci, Hui; Zhang, Qiang; Singh, Vijay P.; Xiao, Mingzhong; Liu, Lin

    2016-08-01

    Variations of frost days and growing season length (GSL) have been drawing increasing attention due to their impact on agriculture. The Xinjiang region in China is climatically an arid region and plays an important role in agriculture development. In this study, the GSL and frost events are analyzed in both space and time, based on the daily minimum, mean and maximum air surface temperature data covering a period of 1961-2010. Results indicate that: (1) a significant lengthening of GSL is detected during 1961-2010 in Xinjiang, China. The increasing rate of GSL over Xinjiang is about 2.5 days per decade. Besides, the starting time of growing season is 0.7 days earlier per decade and the ending time is 1.6 days later per decade. Generally, GSL in southern Xinjiang has larger increasing magnitude when compared to other regions of Xinjiang; (2) longer GSL and larger changing magnitude of growing season start (GSS), growing season end (GSE) and GSL in southern Xinjiang implies higher sensitivity of the growing season response to climate warming. Besides, GSL is in close relation with latitude, and higher latitude usually corresponds to later start and earlier end of growing season, and hence shorter GSL. In general, a northward increase of 1° latitude triggers an 8-day delay of the starting time of growing season, 6-day advance of the ending time of growing season, and thus the GSL is 14 days shorter; (3) GSL under different rates can reflect light and heat resources over Xinjiang. The GSL related to 80 % guarantee rate is 5-14 days shorter than the long-term annual mean GSL; (4) Lengthening of GSL has the potential to increase agricultural production. However, negative influences by climate warming, such as enhanced evapotranspiration, increasing weeds, insects, and pathogen-mediated plant diseases, should also be considered in planning, management and development of agriculture in Xinjiang.

  2. Spatiotemporal properties of growing season indices during 1961-2010 and possible association with agroclimatological regionalization of dominant crops in Xinjiang, China

    NASA Astrophysics Data System (ADS)

    Ci, Hui; Zhang, Qiang; Singh, Vijay P.; Xiao, Mingzhong; Liu, Lin

    2015-11-01

    Variations of frost days and growing season length (GSL) have been drawing increasing attention due to their impact on agriculture. The Xinjiang region in China is climatically an arid region and plays an important role in agriculture development. In this study, the GSL and frost events are analyzed in both space and time, based on the daily minimum, mean and maximum air surface temperature data covering a period of 1961-2010. Results indicate that: (1) a significant lengthening of GSL is detected during 1961-2010 in Xinjiang, China. The increasing rate of GSL over Xinjiang is about 2.5 days per decade. Besides, the starting time of growing season is 0.7 days earlier per decade and the ending time is 1.6 days later per decade. Generally, GSL in southern Xinjiang has larger increasing magnitude when compared to other regions of Xinjiang; (2) longer GSL and larger changing magnitude of growing season start (GSS), growing season end (GSE) and GSL in southern Xinjiang implies higher sensitivity of the growing season response to climate warming. Besides, GSL is in close relation with latitude, and higher latitude usually corresponds to later start and earlier end of growing season, and hence shorter GSL. In general, a northward increase of 1° latitude triggers an 8-day delay of the starting time of growing season, 6-day advance of the ending time of growing season, and thus the GSL is 14 days shorter; (3) GSL under different rates can reflect light and heat resources over Xinjiang. The GSL related to 80 % guarantee rate is 5-14 days shorter than the long-term annual mean GSL; (4) Lengthening of GSL has the potential to increase agricultural production. However, negative influences by climate warming, such as enhanced evapotranspiration, increasing weeds, insects, and pathogen-mediated plant diseases, should also be considered in planning, management and development of agriculture in Xinjiang.

  3. RGB-D Indoor Plane-based 3D-Modeling using Autonomous Robot

    NASA Astrophysics Data System (ADS)

    Mostofi, N.; Moussa, A.; Elhabiby, M.; El-Sheimy, N.

    2014-11-01

    3D model of indoor environments provide rich information that can facilitate the disambiguation of different places and increases the familiarization process to any indoor environment for the remote users. In this research work, we describe a system for visual odometry and 3D modeling using information from RGB-D sensor (Camera). The visual odometry method estimates the relative pose of the consecutive RGB-D frames through feature extraction and matching techniques. The pose estimated by visual odometry algorithm is then refined with iterative closest point (ICP) method. The switching technique between ICP and visual odometry in case of no visible features suppresses inconsistency in the final developed map. Finally, we add the loop closure to remove the deviation between first and last frames. In order to have a semantic meaning out of 3D models, the planar patches are segmented from RGB-D point clouds data using region growing technique followed by convex hull method to assign boundaries to the extracted patches. In order to build a final semantic 3D model, the segmented patches are merged using relative pose information obtained from the first step.

  4. Testing the USGS 3D San Francisco Bay Area Seismic Velocity Model using Observations of 0.5 to 2 s Surface Waves from Local and Regional Earthquakes (Invited)

    NASA Astrophysics Data System (ADS)

    Brocher, T. M.; Frankel, A. D.; Oppenheimer, D. H.; Fletcher, J. B.; Luetgert, J. H.

    2010-12-01

    USGS 3D seismic velocity model. For the past year, long period motions have also been recorded by the NetQuakes project which is installing a large number (hundreds) of small, relatively inexpensive seismographs in 1 to 2 story homes and businesses. The instruments have an 18-bit resolution recorder and ± 3 g internal tri-axial MEMS accelerometers. NetQuakes instruments have successfully recorded long period motions from the January 9, 2010 M6.5 quake in the Gorda Plate near the Mendocino Triple Junction, the largest earthquake in northern California since June 17, 2005.

  5. 3D multiplexed immunoplasmonics microscopy

    NASA Astrophysics Data System (ADS)

    Bergeron, Éric; Patskovsky, Sergiy; Rioux, David; Meunier, Michel

    2016-07-01

    Selective labelling, identification and spatial distribution of cell surface biomarkers can provide important clinical information, such as distinction between healthy and diseased cells, evolution of a disease and selection of the optimal patient-specific treatment. Immunofluorescence is the gold standard for efficient detection of biomarkers expressed by cells. However, antibodies (Abs) conjugated to fluorescent dyes remain limited by their photobleaching, high sensitivity to the environment, low light intensity, and wide absorption and emission spectra. Immunoplasmonics is a novel microscopy method based on the visualization of Abs-functionalized plasmonic nanoparticles (fNPs) targeting cell surface biomarkers. Tunable fNPs should provide higher multiplexing capacity than immunofluorescence since NPs are photostable over time, strongly scatter light at their plasmon peak wavelengths and can be easily functionalized. In this article, we experimentally demonstrate accurate multiplexed detection based on the immunoplasmonics approach. First, we achieve the selective labelling of three targeted cell surface biomarkers (cluster of differentiation 44 (CD44), epidermal growth factor receptor (EGFR) and voltage-gated K+ channel subunit KV1.1) on human cancer CD44+ EGFR+ KV1.1+ MDA-MB-231 cells and reference CD44- EGFR- KV1.1+ 661W cells. The labelling efficiency with three stable specific immunoplasmonics labels (functionalized silver nanospheres (CD44-AgNSs), gold (Au) NSs (EGFR-AuNSs) and Au nanorods (KV1.1-AuNRs)) detected by reflected light microscopy (RLM) is similar to the one with immunofluorescence. Second, we introduce an improved method for 3D localization and spectral identification of fNPs based on fast z-scanning by RLM with three spectral filters corresponding to the plasmon peak wavelengths of the immunoplasmonics labels in the cellular environment (500 nm for 80 nm AgNSs, 580 nm for 100 nm AuNSs and 700 nm for 40 nm × 92 nm AuNRs). Third, the developed

  6. The 3D Elevation Program: summary for Maryland

    USGS Publications Warehouse

    Carswell, William J., Jr.

    2014-01-01

    Elevation data are essential to a broad range of applications, including forest resources management, wildlife and habitat management, national security, recreation, and many others. For the State of Maryland, elevation data are critical for agriculture and precision farming, natural resources conservation such as the Chesapeake Bay and its watershed, flood risk management, urban and regional planning, infrastructure and construction management, water supply and quality, coastal zone management, and other business uses. Today, high-density light detection and ranging (lidar) data are the primary sources for deriving elevation models and other datasets. Federal, State, Tribal, and local agencies work in partnership to (1) replace data that are older and of lower quality and (2) provide coverage where publicly accessible data do not exist. A joint goal of State and Federal partners is to acquire consistent, statewide coverage to support existing and emerging applications enabled by lidar data. The National Enhanced Elevation Assessment evaluated multiple elevation data acquisition options to determine the optimal data quality and data replacement cycle relative to cost to meet the identified requirements of the user community. The evaluation demonstrated that lidar acquisition at quality level 2 for the conterminous United States and quality level 5 ifsar data for Alaska with a 6- to 10-year acquisition cycle provided the highest benefit/cost ratios. The 3D Elevation Program (3DEP) initiative selected an 8-year acquisition cycle for the respective quality levels. 3DEP, managed by the U.S. Geological Survey (USGS), the Office of Management and Budget Circular A–16 lead agency for terrestrial elevation data, responds to the growing need for high-quality topographic data and a wide range of other 3D representations of the Nation’s natural and constructed features.

  7. NIF Ignition Target 3D Point Design

    SciTech Connect

    Jones, O; Marinak, M; Milovich, J; Callahan, D

    2008-11-05

    We have developed an input file for running 3D NIF hohlraums that is optimized such that it can be run in 1-2 days on parallel computers. We have incorporated increasing levels of automation into the 3D input file: (1) Configuration controlled input files; (2) Common file for 2D and 3D, different types of capsules (symcap, etc.); and (3) Can obtain target dimensions, laser pulse, and diagnostics settings automatically from NIF Campaign Management Tool. Using 3D Hydra calculations to investigate different problems: (1) Intrinsic 3D asymmetry; (2) Tolerance to nonideal 3D effects (e.g. laser power balance, pointing errors); and (3) Synthetic diagnostics.

  8. 3D multiplexed immunoplasmonics microscopy.

    PubMed

    Bergeron, Éric; Patskovsky, Sergiy; Rioux, David; Meunier, Michel

    2016-07-21

    Selective labelling, identification and spatial distribution of cell surface biomarkers can provide important clinical information, such as distinction between healthy and diseased cells, evolution of a disease and selection of the optimal patient-specific treatment. Immunofluorescence is the gold standard for efficient detection of biomarkers expressed by cells. However, antibodies (Abs) conjugated to fluorescent dyes remain limited by their photobleaching, high sensitivity to the environment, low light intensity, and wide absorption and emission spectra. Immunoplasmonics is a novel microscopy method based on the visualization of Abs-functionalized plasmonic nanoparticles (fNPs) targeting cell surface biomarkers. Tunable fNPs should provide higher multiplexing capacity than immunofluorescence since NPs are photostable over time, strongly scatter light at their plasmon peak wavelengths and can be easily functionalized. In this article, we experimentally demonstrate accurate multiplexed detection based on the immunoplasmonics approach. First, we achieve the selective labelling of three targeted cell surface biomarkers (cluster of differentiation 44 (CD44), epidermal growth factor receptor (EGFR) and voltage-gated K(+) channel subunit KV1.1) on human cancer CD44(+) EGFR(+) KV1.1(+) MDA-MB-231 cells and reference CD44(-) EGFR(-) KV1.1(+) 661W cells. The labelling efficiency with three stable specific immunoplasmonics labels (functionalized silver nanospheres (CD44-AgNSs), gold (Au) NSs (EGFR-AuNSs) and Au nanorods (KV1.1-AuNRs)) detected by reflected light microscopy (RLM) is similar to the one with immunofluorescence. Second, we introduce an improved method for 3D localization and spectral identification of fNPs based on fast z-scanning by RLM with three spectral filters corresponding to the plasmon peak wavelengths of the immunoplasmonics labels in the cellular environment (500 nm for 80 nm AgNSs, 580 nm for 100 nm AuNSs and 700 nm for 40 nm × 92 nm AuNRs). Third

  9. 3D Kitaev spin liquids

    NASA Astrophysics Data System (ADS)

    Hermanns, Maria

    The Kitaev honeycomb model has become one of the archetypal spin models exhibiting topological phases of matter, where the magnetic moments fractionalize into Majorana fermions interacting with a Z2 gauge field. In this talk, we discuss generalizations of this model to three-dimensional lattice structures. Our main focus is the metallic state that the emergent Majorana fermions form. In particular, we discuss the relation of the nature of this Majorana metal to the details of the underlying lattice structure. Besides (almost) conventional metals with a Majorana Fermi surface, one also finds various realizations of Dirac semi-metals, where the gapless modes form Fermi lines or even Weyl nodes. We introduce a general classification of these gapless quantum spin liquids using projective symmetry analysis. Furthermore, we briefly outline why these Majorana metals in 3D Kitaev systems provide an even richer variety of Dirac and Weyl phases than possible for electronic matter and comment on possible experimental signatures. Work done in collaboration with Kevin O'Brien and Simon Trebst.

  10. Yogi the rock - 3D

    NASA Technical Reports Server (NTRS)

    1997-01-01

    Yogi, a rock taller than rover Sojourner, is the subject of this image, taken in stereo by the deployed Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. The soil in the foreground has been the location of multiple soil mechanics experiments performed by Sojourner's cleated wheels. Pathfinder scientists were able to control the force inflicted on the soil beneath the rover's wheels, giving them insight into the soil's mechanical properties. The soil mechanics experiments were conducted after this image was taken.

    Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.

    Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  11. 3D ultrafast laser scanner

    NASA Astrophysics Data System (ADS)

    Mahjoubfar, A.; Goda, K.; Wang, C.; Fard, A.; Adam, J.; Gossett, D. R.; Ayazi, A.; Sollier, E.; Malik, O.; Chen, E.; Liu, Y.; Brown, R.; Sarkhosh, N.; Di Carlo, D.; Jalali, B.

    2013-03-01

    Laser scanners are essential for scientific research, manufacturing, defense, and medical practice. Unfortunately, often times the speed of conventional laser scanners (e.g., galvanometric mirrors and acousto-optic deflectors) falls short for many applications, resulting in motion blur and failure to capture fast transient information. Here, we present a novel type of laser scanner that offers roughly three orders of magnitude higher scan rates than conventional methods. Our laser scanner, which we refer to as the hybrid dispersion laser scanner, performs inertia-free laser scanning by dispersing a train of broadband pulses both temporally and spatially. More specifically, each broadband pulse is temporally processed by time stretch dispersive Fourier transform and further dispersed into space by one or more diffractive elements such as prisms and gratings. As a proof-of-principle demonstration, we perform 1D line scans at a record high scan rate of 91 MHz and 2D raster scans and 3D volumetric scans at an unprecedented scan rate of 105 kHz. The method holds promise for a broad range of scientific, industrial, and biomedical applications. To show the utility of our method, we demonstrate imaging, nanometer-resolved surface vibrometry, and high-precision flow cytometry with real-time throughput that conventional laser scanners cannot offer due to their low scan rates.

  12. Crowdsourcing Based 3d Modeling

    NASA Astrophysics Data System (ADS)

    Somogyi, A.; Barsi, A.; Molnar, B.; Lovas, T.

    2016-06-01

    Web-based photo albums that support organizing and viewing the users' images are widely used. These services provide a convenient solution for storing, editing and sharing images. In many cases, the users attach geotags to the images in order to enable using them e.g. in location based applications on social networks. Our paper discusses a procedure that collects open access images from a site frequently visited by tourists. Geotagged pictures showing the image of a sight or tourist attraction are selected and processed in photogrammetric processing software that produces the 3D model of the captured object. For the particular investigation we selected three attractions in Budapest. To assess the geometrical accuracy, we used laser scanner and DSLR as well as smart phone photography to derive reference values to enable verifying the spatial model obtained from the web-album images. The investigation shows how detailed and accurate models could be derived applying photogrammetric processing software, simply by using images of the community, without visiting the site.

  13. 3D multiplexed immunoplasmonics microscopy

    NASA Astrophysics Data System (ADS)

    Bergeron, Éric; Patskovsky, Sergiy; Rioux, David; Meunier, Michel

    2016-07-01

    Selective labelling, identification and spatial distribution of cell surface biomarkers can provide important clinical information, such as distinction between healthy and diseased cells, evolution of a disease and selection of the optimal patient-specific treatment. Immunofluorescence is the gold standard for efficient detection of biomarkers expressed by cells. However, antibodies (Abs) conjugated to fluorescent dyes remain limited by their photobleaching, high sensitivity to the environment, low light intensity, and wide absorption and emission spectra. Immunoplasmonics is a novel microscopy method based on the visualization of Abs-functionalized plasmonic nanoparticles (fNPs) targeting cell surface biomarkers. Tunable fNPs should provide higher multiplexing capacity than immunofluorescence since NPs are photostable over time, strongly scatter light at their plasmon peak wavelengths and can be easily functionalized. In this article, we experimentally demonstrate accurate multiplexed detection based on the immunoplasmonics approach. First, we achieve the selective labelling of three targeted cell surface biomarkers (cluster of differentiation 44 (CD44), epidermal growth factor receptor (EGFR) and voltage-gated K+ channel subunit KV1.1) on human cancer CD44+ EGFR+ KV1.1+ MDA-MB-231 cells and reference CD44- EGFR- KV1.1+ 661W cells. The labelling efficiency with three stable specific immunoplasmonics labels (functionalized silver nanospheres (CD44-AgNSs), gold (Au) NSs (EGFR-AuNSs) and Au nanorods (KV1.1-AuNRs)) detected by reflected light microscopy (RLM) is similar to the one with immunofluorescence. Second, we introduce an improved method for 3D localization and spectral identification of fNPs based on fast z-scanning by RLM with three spectral filters corresponding to the plasmon peak wavelengths of the immunoplasmonics labels in the cellular environment (500 nm for 80 nm AgNSs, 580 nm for 100 nm AuNSs and 700 nm for 40 nm × 92 nm AuNRs). Third, the developed

  14. Creating 3D realistic head: from two orthogonal photos to multiview face contents

    NASA Astrophysics Data System (ADS)

    Lin, Yuan; Lin, Qian; Tang, Feng; Tang, Liang; Lim, Sukhwan; Wang, Shengjin

    2011-03-01

    3D Head models have many applications, such as virtual conference, 3D web game, and so on. The existing several web-based face modeling solutions that can create a 3D face model from one or two user uploaded face images, are limited to generating the 3D model of only face region. The accuracy of such reconstruction is very limited for side views, as well as hair regions. The goal of our research is to develop a framework for reconstructing the realistic 3D human head based on two approximate orthogonal views. Our framework takes two images, and goes through segmentation, feature points detection, 3D bald head reconstruction, 3D hair reconstruction and texture mapping to create a 3D head model. The main contribution of the paper is that the processing steps are applies to both the face region as well as the hair region.

  15. Shape control in wafer-based aperiodic 3D nanostructures

    NASA Astrophysics Data System (ADS)

    Jeong, Hyeon-Ho; Mark, Andrew G.; Gibbs, John G.; Reindl, Thomas; Waizmann, Ulrike; Weis, Jürgen; Fischer, Peer

    2014-06-01

    Controlled local fabrication of three-dimensional (3D) nanostructures is important to explore and enhance the function of single nanodevices, but is experimentally challenging. We present a scheme based on e-beam lithography (EBL) written seeds, and glancing angle deposition (GLAD) grown structures to create nanoscale objects with defined shapes but in aperiodic arrangements. By using a continuous sacrificial corral surrounding the features of interest we grow isolated 3D nanostructures that have complex cross-sections and sidewall morphology that are surrounded by zones of clean substrate.

  16. Combining Remote Sensing and Landscape Metrics to monitor Urban Spatial Variation - Examples from Growing and Shrinking Regions

    NASA Astrophysics Data System (ADS)

    Netzband, M.

    2011-12-01

    also fragmentation of recreational sites within metropolitan areas and of built-up areas within green spaces in suburban areas. Dynamic urban area indicators refer to typology of changes and the transition from one land-use class to another. A methodological approach is presented applied to different parts of Europe in growing as well as shrinking urban regions, after which monitoring and evaluation of a landscape diversity in suburban landscapes are feasible on the basis of medium and high resolution satellite data.

  17. Spin fluctuations in 3d paramagnetic metals

    NASA Astrophysics Data System (ADS)

    Wysocki, Aleksander; Kutepov, Andrey; Antropov, Vladimir

    Spin fluctuations (SFs) in 3d paramagnetic metals were investigated using the linear response formalism within the time dependent density functional theory. An efficient scheme of frequency integration using the Matsubara technique has been implemented and tested. The SFs spectrum in 3d paramagnets is analyzed in real and reciprocal spaces as a function of frequency and temperature. For all materials the SFs are characterized by the coexistence of low and high energy branches which originate from different regions of the Brillouin zone. The low-energy ones can be measured by neutron scattering experiments while the high-energy SFs appear to be more localized. Further, we studied the nature of square of fluctuating magnetic moment in these materials. This work was supported, in part, by the Critical Materials Institute, an Energy Innovation Hub funded by the U.S. Department of Energy (DOE), and by the Office of Basic Energy Science, Division of Materials Science and Engineering. The research was performed at Ames Laboratory, which is operated for the U.S. DOE by Iowa State University under contract # DE-AC02-07CH11358.

  18. 3D-printed mechanochromic materials.

    PubMed

    Peterson, Gregory I; Larsen, Michael B; Ganter, Mark A; Storti, Duane W; Boydston, Andrew J

    2015-01-14

    We describe the preparation and characterization of photo- and mechanochromic 3D-printed structures using a commercial fused filament fabrication printer. Three spiropyran-containing poly(ε-caprolactone) (PCL) polymers were each filamentized and used to print single- and multicomponent tensile testing specimens that would be difficult, if not impossible, to prepare using traditional manufacturing techniques. It was determined that the filament production and printing process did not degrade the spiropyran units or polymer chains and that the mechanical properties of the specimens prepared with the custom filament were in good agreement with those from commercial PCL filament. In addition to printing photochromic and dual photo- and mechanochromic PCL materials, we also prepare PCL containing a spiropyran unit that is selectively activated by mechanical impetus. Multicomponent specimens containing two different responsive spiropyrans enabled selective activation of different regions within the specimen depending on the stimulus applied to the material. By taking advantage of the unique capabilities of 3D printing, we also demonstrate rapid modification of a prototype force sensor that enables the assessment of peak load by simple visual assessment of mechanochromism. PMID:25478746

  19. Dissipation mechanism in 3D magnetic reconnection

    SciTech Connect

    Fujimoto, Keizo

    2011-11-15

    Dissipation processes responsible for fast magnetic reconnection in collisionless plasmas are investigated using 3D electromagnetic particle-in-cell simulations. The present study revisits the two simulation runs performed in the previous study (Fujimoto, Phys. Plasmas 16, 042103 (2009)); one with small system size in the current density direction, and the other with larger system size. In the case with small system size, the reconnection processes are almost the same as those in 2D reconnection, while in the other case a kink mode evolves along the current density and deforms the current sheet structure drastically. Although fast reconnection is achieved in both the cases, the dissipation mechanism is very different between them. In the case without kink mode, the electrons transit the electron diffusion region without thermalization, so that the magnetic dissipation is supported by the inertia resistivity alone. On the other hand, in the kinked current sheet, the electrons are not only accelerated in bulk, but they are also partly scattered and thermalized by the kink mode, which results in the anomalous resistivity in addition to the inertia resistivity. It is demonstrated that in 3D reconnection the thickness of the electron current sheet becomes larger than the local electron inertia length, consistent with the theoretical prediction in Fujimoto and Sydora (Phys. Plasmas 16, 112309 (2009)).

  20. Slope instability in complex 3D topography promoted by convergent 3D groundwater flow

    NASA Astrophysics Data System (ADS)

    Reid, M. E.; Brien, D. L.

    2012-12-01

    Slope instability in complex topography is generally controlled by the interaction between gravitationally induced stresses, 3D strengths, and 3D pore-fluid pressure fields produced by flowing groundwater. As an example of this complexity, coastal bluffs sculpted by landsliding commonly exhibit a progression of undulating headlands and re-entrants. In this landscape, stresses differ between headlands and re-entrants and 3D groundwater flow varies from vertical rainfall infiltration to lateral groundwater flow on lower permeability layers with subsequent discharge at the curved bluff faces. In plan view, groundwater flow converges in the re-entrant regions. To investigate relative slope instability induced by undulating topography, we couple the USGS 3D limit-equilibrium slope-stability model, SCOOPS, with the USGS 3D groundwater flow model, MODFLOW. By rapidly analyzing the stability of millions of potential failures, the SCOOPS model can determine relative slope stability throughout the 3D domain underlying a digital elevation model (DEM), and it can utilize both fully 3D distributions of pore-water pressure and material strength. The two models are linked by first computing a groundwater-flow field in MODFLOW, and then computing stability in SCOOPS using the pore-pressure field derived from groundwater flow. Using these two models, our analyses of 60m high coastal bluffs in Seattle, Washington showed augmented instability in topographic re-entrants given recharge from a rainy season. Here, increased recharge led to elevated perched water tables with enhanced effects in the re-entrants owing to convergence of groundwater flow. Stability in these areas was reduced about 80% compared to equivalent dry conditions. To further isolate these effects, we examined groundwater flow and stability in hypothetical landscapes composed of uniform and equally spaced, oscillating headlands and re-entrants with differing amplitudes. The landscapes had a constant slope for both

  1. 3-D Cavern Enlargement Analyses

    SciTech Connect

    EHGARTNER, BRIAN L.; SOBOLIK, STEVEN R.

    2002-03-01

    Three-dimensional finite element analyses simulate the mechanical response of enlarging existing caverns at the Strategic Petroleum Reserve (SPR). The caverns are located in Gulf Coast salt domes and are enlarged by leaching during oil drawdowns as fresh water is injected to displace the crude oil from the caverns. The current criteria adopted by the SPR limits cavern usage to 5 drawdowns (leaches). As a base case, 5 leaches were modeled over a 25 year period to roughly double the volume of a 19 cavern field. Thirteen additional leaches where then simulated until caverns approached coalescence. The cavern field approximated the geometries and geologic properties found at the West Hackberry site. This enabled comparisons are data collected over nearly 20 years to analysis predictions. The analyses closely predicted the measured surface subsidence and cavern closure rates as inferred from historic well head pressures. This provided the necessary assurance that the model displacements, strains, and stresses are accurate. However, the cavern field has not yet experienced the large scale drawdowns being simulated. Should they occur in the future, code predictions should be validated with actual field behavior at that time. The simulations were performed using JAS3D, a three dimensional finite element analysis code for nonlinear quasi-static solids. The results examine the impacts of leaching and cavern workovers, where internal cavern pressures are reduced, on surface subsidence, well integrity, and cavern stability. The results suggest that the current limit of 5 oil drawdowns may be extended with some mitigative action required on the wells and later on to surface structure due to subsidence strains. The predicted stress state in the salt shows damage to start occurring after 15 drawdowns with significant failure occurring at the 16th drawdown, well beyond the current limit of 5 drawdowns.

  2. Imaging a Sustainable Future in 3D

    NASA Astrophysics Data System (ADS)

    Schuhr, W.; Lee, J. D.; Kanngieser, E.

    2012-07-01

    It is the intention of this paper, to contribute to a sustainable future by providing objective object information based on 3D photography as well as promoting 3D photography not only for scientists, but also for amateurs. Due to the presentation of this article by CIPA Task Group 3 on "3D Photographs in Cultural Heritage", the presented samples are masterpieces of historic as well as of current 3D photography concentrating on cultural heritage. In addition to a report on exemplarily access to international archives of 3D photographs, samples for new 3D photographs taken with modern 3D cameras, as well as by means of a ground based high resolution XLITE staff camera and also 3D photographs taken from a captive balloon and the use of civil drone platforms are dealt with. To advise on optimum suited 3D methodology, as well as to catch new trends in 3D, an updated synoptic overview of the 3D visualization technology, even claiming completeness, has been carried out as a result of a systematic survey. In this respect, e.g., today's lasered crystals might be "early bird" products in 3D, which, due to lack in resolution, contrast and color, remember to the stage of the invention of photography.

  3. Teaching Geography with 3-D Visualization Technology

    ERIC Educational Resources Information Center

    Anthamatten, Peter; Ziegler, Susy S.

    2006-01-01

    Technology that helps students view images in three dimensions (3-D) can support a broad range of learning styles. "Geo-Wall systems" are visualization tools that allow scientists, teachers, and students to project stereographic images and view them in 3-D. We developed and presented 3-D visualization exercises in several undergraduate courses.…

  4. 3D Printing and Its Urologic Applications

    PubMed Central

    Soliman, Youssef; Feibus, Allison H; Baum, Neil

    2015-01-01

    3D printing is the development of 3D objects via an additive process in which successive layers of material are applied under computer control. This article discusses 3D printing, with an emphasis on its historical context and its potential use in the field of urology. PMID:26028997

  5. 3D Flow Visualization Using Texture Advection

    NASA Technical Reports Server (NTRS)

    Kao, David; Zhang, Bing; Kim, Kwansik; Pang, Alex; Moran, Pat (Technical Monitor)

    2001-01-01

    Texture advection is an effective tool for animating and investigating 2D flows. In this paper, we discuss how this technique can be extended to 3D flows. In particular, we examine the use of 3D and 4D textures on 3D synthetic and computational fluid dynamics flow fields.

  6. 3D Elastic Seismic Wave Propagation Code

    1998-09-23

    E3D is capable of simulating seismic wave propagation in a 3D heterogeneous earth. Seismic waves are initiated by earthquake, explosive, and/or other sources. These waves propagate through a 3D geologic model, and are simulated as synthetic seismograms or other graphical output.

  7. 3D Printing and Its Urologic Applications.

    PubMed

    Soliman, Youssef; Feibus, Allison H; Baum, Neil

    2015-01-01

    3D printing is the development of 3D objects via an additive process in which successive layers of material are applied under computer control. This article discusses 3D printing, with an emphasis on its historical context and its potential use in the field of urology. PMID:26028997

  8. An Evaluative Review of Simulated Dynamic Smart 3d Objects

    NASA Astrophysics Data System (ADS)

    Romeijn, H.; Sheth, F.; Pettit, C. J.

    2012-07-01

    Three-dimensional (3D) modelling of plants can be an asset for creating agricultural based visualisation products. The continuum of 3D plants models ranges from static to dynamic objects, also known as smart 3D objects. There is an increasing requirement for smarter simulated 3D objects that are attributed mathematically and/or from biological inputs. A systematic approach to plant simulation offers significant advantages to applications in agricultural research, particularly in simulating plant behaviour and the influences of external environmental factors. This approach of 3D plant object visualisation is primarily evident from the visualisation of plants using photographed billboarded images, to more advanced procedural models that come closer to simulating realistic virtual plants. However, few programs model physical reactions of plants to external factors and even fewer are able to grow plants based on mathematical and/or biological parameters. In this paper, we undertake an evaluation of plant-based object simulation programs currently available, with a focus upon the components and techniques involved in producing these objects. Through an analytical review process we consider the strengths and weaknesses of several program packages, the features and use of these programs and the possible opportunities in deploying these for creating smart 3D plant-based objects to support agricultural research and natural resource management. In creating smart 3D objects the model needs to be informed by both plant physiology and phenology. Expert knowledge will frame the parameters and procedures that will attribute the object and allow the simulation of dynamic virtual plants. Ultimately, biologically smart 3D virtual plants that react to changes within an environment could be an effective medium to visually represent landscapes and communicate land management scenarios and practices to planners and decision-makers.

  9. Development of an automultiscopic true 3D display (Invited Paper)

    NASA Astrophysics Data System (ADS)

    Kurtz, Russell M.; Pradhan, Ranjit D.; Aye, Tin M.; Yu, Kevin H.; Okorogu, Albert O.; Chua, Kang-Bin; Tun, Nay; Win, Tin; Schindler, Axel

    2005-05-01

    True 3D displays, whether generated by volume holography, merged stereopsis (requiring glasses), or autostereoscopic methods (stereopsis without the need for special glasses), are useful in a great number of applications, ranging from training through product visualization to computer gaming. Holography provides an excellent 3D image but cannot yet be produced in real time, merged stereopsis results in accommodation-convergence conflict (where distance cues generated by the 3D appearance of the image conflict with those obtained from the angular position of the eyes) and lacks parallax cues, and autostereoscopy produces a 3D image visible only from a small region of space. Physical Optics Corporation is developing the next step in real-time 3D displays, the automultiscopic system, which eliminates accommodation-convergence conflict, produces 3D imagery from any position around the display, and includes true image parallax. Theory of automultiscopic display systems is presented, together with results from our prototype display, which produces 3D video imagery with full parallax cues from any viewing direction.

  10. Recent Advances in Visualizing 3D Flow with LIC

    NASA Technical Reports Server (NTRS)

    Interrante, Victoria; Grosch, Chester

    1998-01-01

    Line Integral Convolution (LIC), introduced by Cabral and Leedom in 1993, is an elegant and versatile technique for representing directional information via patterns of correlation in a texture. Although most commonly used to depict 2D flow, or flow over a surface in 3D, LIC methods can equivalently be used to portray 3D flow through a volume. However, the popularity of LIC as a device for illustrating 3D flow has historically been limited both by the computational expense of generating and rendering such a 3D texture and by the difficulties inherent in clearly and effectively conveying the directional information embodied in the volumetric output textures that are produced. In an earlier paper, we briefly discussed some of the factors that may underlie the perceptual difficulties that we can encounter with dense 3D displays and outlined several strategies for more effectively visualizing 3D flow with volume LIC. In this article, we review in more detail techniques for selectively emphasizing critical regions of interest in a flow and for facilitating the accurate perception of the 3D depth and orientation of overlapping streamlines, and we demonstrate new methods for efficiently incorporating an indication of orientation into a flow representation and for conveying additional information about related scalar quantities such as temperature or vorticity over a flow via subtle, continuous line width and color variations.

  11. 3D Radiative Transfer in Cloudy Atmospheres

    NASA Astrophysics Data System (ADS)

    Marshak, Alexander; Davis, Anthony

    Developments in three-dimensional cloud radiation over the past few decades are assessed and distilled into this contributed volume. Chapters are authored by subject-matter experts who address a broad audience of graduate students, researchers, and anyone interested in cloud-radiation processes in the solar and infrared spectral regions. After two introductory chapters and a section on the fundamental physics and computational techniques, the volume extensively treats two main application areas: the impact of clouds on the Earth's radiation budget, which is an essential aspect of climate modeling; and remote observation of clouds, especially with the advanced sensors on current and future satellite missions. http://www.springeronline.com/alert/article?a=3D1_1fva7w_1j826l_41z_6

  12. 3-D Perspective Pasadena, California

    NASA Technical Reports Server (NTRS)

    2000-01-01

    This perspective view shows the western part of the city of Pasadena, California, looking north towards the San Gabriel Mountains. Portions of the cities of Altadena and La Canada, Flintridge are also shown. The image was created from three datasets: the Shuttle Radar Topography Mission (SRTM) supplied the elevation data; Landsat data from November 11, 1986 provided the land surface color (not the sky) and U.S. Geological Survey digital aerial photography provides the image detail. The Rose Bowl, surrounded by a golf course, is the circular feature at the bottom center of the image. The Jet Propulsion Laboratory is the cluster of large buildings north of the Rose Bowl at the base of the mountains. A large landfill, Scholl Canyon, is the smooth area in the lower left corner of the scene. This image shows the power of combining data from different sources to create planning tools to study problems that affect large urban areas. In addition to the well-known earthquake hazards, Southern California is affected by a natural cycle of fire and mudflows. Wildfires strip the mountains of vegetation, increasing the hazards from flooding and mudflows for several years afterwards. Data such as shown on this image can be used to predict both how wildfires will spread over the terrain and also how mudflows will be channeled down the canyons. The Shuttle Radar Topography Mission (SRTM), launched on February 11, 2000, uses the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on the Space Shuttle Endeavour in 1994. The mission was designed to collect three dimensional measurements of the Earth's surface. To collect the 3-D data, engineers added a 60-meter-long (200-foot) mast, an additional C-band imaging antenna and improved tracking and navigation devices. The mission is a cooperative project between the National Aeronautics and Space Administration (NASA), the National Imagery and Mapping Agency

  13. The Esri 3D city information model

    NASA Astrophysics Data System (ADS)

    Reitz, T.; Schubiger-Banz, S.

    2014-02-01

    With residential and commercial space becoming increasingly scarce, cities are going vertical. Managing the urban environments in 3D is an increasingly important and complex undertaking. To help solving this problem, Esri has released the ArcGIS for 3D Cities solution. The ArcGIS for 3D Cities solution provides the information model, tools and apps for creating, analyzing and maintaining a 3D city using the ArcGIS platform. This paper presents an overview of the 3D City Information Model and some sample use cases.

  14. Magnetocentrifugal Winds in 3D: Nonaxisymmetric Steady State

    SciTech Connect

    Anderson, Jeffrey M.; Li, Zhi-Yun; Krasnopolsky, Ruben; Blandford, Roger D.; /SLAC

    2006-11-28

    Outflows can be loaded and accelerated to high speeds along rapidly rotating, open magnetic field lines by centrifugal forces. Whether such magnetocentrifugally driven winds are stable is a longstanding theoretical problem. As a step towards addressing this problem, we perform the first large-scale 3D MHD simulations that extend to a distance {approx} 10{sup 2} times beyond the launching region, starting from steady 2D (axisymmetric) solutions. In an attempt to drive the wind unstable, we increase the mass loading on one half of the launching surface by a factor of {radical}10, and reduce it by the same factor on the other half. The evolution of the perturbed wind is followed numerically. We find no evidence for any rapidly growing instability that could disrupt the wind during the launching and initial phase of propagation, even when the magnetic field of the magnetocentrifugal wind is toroidally dominated all the way to the launching surface. The strongly perturbed wind settles into a new steady state, with a highly asymmetric mass distribution. The distribution of magnetic field strength is, in contrast, much more symmetric. We discuss possible reasons for the apparent stability, including stabilization by an axial poloidal magnetic field, which is required to bend field lines away from the vertical direction and produce a magnetocentrifugal wind in the first place.

  15. The 3D Elevation Program: summary for Virginia

    USGS Publications Warehouse

    Carswell, William J., Jr.

    2013-01-01

    Elevation data are essential to a broad range of applications, including forest resources management, wildlife and habitat management, national security, recreation, and many others. For the Commonwealth of Virginia, elevation data are critical for urban and regional planning, natural resources conservation, flood risk management, agriculture and precision farming, resource mining, infrastructure and construction management, and other business uses. Today, high-quality light detection and ranging (lidar) data are the sources for creating elevation models and other elevation datasets. Federal, State, and local agencies work in partnership to (1) replace data, on a national basis, that are (on average) 30 years old and of lower quality and (2) provide coverage where publicly accessible data do not exist. A joint goal of State and Federal partners is to acquire consistent, statewide coverage to support existing and emerging applications enabled by lidar data. The new 3D Elevation Program (3DEP) initiative, managed by the U.S. Geological Survey (USGS), responds to the growing need for high-quality topographic data and a wide range of other three-dimensional representations of the Nation’s natural and constructed features.

  16. 3D Modeling of Equatorial Plasma Bubbles

    NASA Astrophysics Data System (ADS)

    Huba, Joseph; Joyce, Glenn; Krall, Jonathan

    2011-10-01

    Post-sunset ionospheric irregularities in the equatorial F region were first observed by Booker and Wells (1938) using ionosondes. This phenomenon has become known as equatorial spread F (ESF). During ESF the equatorial ionosphere becomes unstable because of a Rayleigh-Taylor-like instability: large scale (10s km) electron density ``bubbles'' can develop and rise to high altitudes (1000 km or greater at times). Understanding and modeling ESF is important because of its impact on space weather: it causes radio wave scintillation that degrades communication and navigation systems. In fact, it is the focus of of the Air Force Communications/Navigation Outage Forecast Satellite (C/NOFS) mission. We will describe 3D simulation results from the NRL ionosphere models SAMI3 and SAMI3/ESF of this phenomenon. In particular, we will examine the causes of the day-to-day ariability of ESF which is an unresolved problem at this time. Post-sunset ionospheric irregularities in the equatorial F region were first observed by Booker and Wells (1938) using ionosondes. This phenomenon has become known as equatorial spread F (ESF). During ESF the equatorial ionosphere becomes unstable because of a Rayleigh-Taylor-like instability: large scale (10s km) electron density ``bubbles'' can develop and rise to high altitudes (1000 km or greater at times). Understanding and modeling ESF is important because of its impact on space weather: it causes radio wave scintillation that degrades communication and navigation systems. In fact, it is the focus of of the Air Force Communications/Navigation Outage Forecast Satellite (C/NOFS) mission. We will describe 3D simulation results from the NRL ionosphere models SAMI3 and SAMI3/ESF of this phenomenon. In particular, we will examine the causes of the day-to-day ariability of ESF which is an unresolved problem at this time. Research supported by ONR.

  17. Case study: Beauty and the Beast 3D: benefits of 3D viewing for 2D to 3D conversion

    NASA Astrophysics Data System (ADS)

    Handy Turner, Tara

    2010-02-01

    From the earliest stages of the Beauty and the Beast 3D conversion project, the advantages of accurate desk-side 3D viewing was evident. While designing and testing the 2D to 3D conversion process, the engineering team at Walt Disney Animation Studios proposed a 3D viewing configuration that not only allowed artists to "compose" stereoscopic 3D but also improved efficiency by allowing artists to instantly detect which image features were essential to the stereoscopic appeal of a shot and which features had minimal or even negative impact. At a time when few commercial 3D monitors were available and few software packages provided 3D desk-side output, the team designed their own prototype devices and collaborated with vendors to create a "3D composing" workstation. This paper outlines the display technologies explored, final choices made for Beauty and the Beast 3D, wish-lists for future development and a few rules of thumb for composing compelling 2D to 3D conversions.

  18. 3D printed long period gratings for optical fibers.

    PubMed

    Iezzi, Victor Lambin; Boisvert, Jean-Sébastien; Loranger, Sébastien; Kashyap, Raman

    2016-04-15

    We demonstrate a simple technique for implementing long period grating (LPG) structures by the use of a 3D printer. This Letter shows a way of manipulating the mode coupling within an optical fiber by applying stress through an external 3D printed periodic structure. Different LPG lengths and periods have been studied, as well as the effect of the applied stress on the coupling efficiency from the fundamental mode to cladding modes. The technique is very simple, highly flexible, affordable, and easy to implement without the need of altering the optical fiber. This Letter is part of a growing line of interest in the use of 3D printers for optical applications. PMID:27082365

  19. 3D laptop for defense applications

    NASA Astrophysics Data System (ADS)

    Edmondson, Richard; Chenault, David

    2012-06-01

    Polaris Sensor Technologies has developed numerous 3D display systems using a US Army patented approach. These displays have been developed as prototypes for handheld controllers for robotic systems and closed hatch driving, and as part of a TALON robot upgrade for 3D vision, providing depth perception for the operator for improved manipulation and hazard avoidance. In this paper we discuss the prototype rugged 3D laptop computer and its applications to defense missions. The prototype 3D laptop combines full temporal and spatial resolution display with the rugged Amrel laptop computer. The display is viewed through protective passive polarized eyewear, and allows combined 2D and 3D content. Uses include robot tele-operation with live 3D video or synthetically rendered scenery, mission planning and rehearsal, enhanced 3D data interpretation, and simulation.

  20. Extension of RCC Topological Relations for 3d Complex Objects Components Extracted from 3d LIDAR Point Clouds

    NASA Astrophysics Data System (ADS)

    Xing, Xu-Feng; Abolfazl Mostafavia, Mir; Wang, Chen

    2016-06-01

    Topological relations are fundamental for qualitative description, querying and analysis of a 3D scene. Although topological relations for 2D objects have been extensively studied and implemented in GIS applications, their direct extension to 3D is very challenging and they cannot be directly applied to represent relations between components of complex 3D objects represented by 3D B-Rep models in R3. Herein we present an extended Region Connection Calculus (RCC) model to express and formalize topological relations between planar regions for creating 3D model represented by Boundary Representation model in R3. We proposed a new dimension extended 9-Intersection model to represent the basic relations among components of a complex object, including disjoint, meet and intersect. The last element in 3*3 matrix records the details of connection through the common parts of two regions and the intersecting line of two planes. Additionally, this model can deal with the case of planar regions with holes. Finally, the geometric information is transformed into a list of strings consisting of topological relations between two planar regions and detailed connection information. The experiments show that the proposed approach helps to identify topological relations of planar segments of point cloud automatically.

  1. 3D Simulations of the Beehive Proplyd

    NASA Astrophysics Data System (ADS)

    Feitosa, J. A.; Vasconcelos, M. J.; Cerqueira, A. H.

    2014-10-01

    Some star formation regions, like the Orion nebula, have stars of different masses, from massive stars, responsible for strong ionizing winds and HII regions, to low-mass stars, which spend a long time in the protostellar phase, and are frequently associated with protostellar disks and jets. Massive O or B stars emit a great deal of UV radiation, able to dissociate the hydrogen molecule (FUV radiation, energies between 6-13 eV), to ionize the atomic hydrogen (EUV radiation, energies greater than 13.6 eV) and heat the gas. Around these stars, a large and hot (10^{4}K) region is formed, known as HII region. T-Tauri stars inside HII regions produce a type of young stellar object, a proplyd, described with accuracy in O'Dell et al. (1993). Proplyds exhibit a cometary shape from which we can distinguish a central low-mass star with an accretion disk, an ionization front, a photodissociation region and, sometimes, an external bow shock and a protostellar jet. Its morphological characteristics depends on the distance between the low-mass star and the source of the ionizing radiation. The Beehive, a giant proplyd in Orion Nebula, has attracted attention due to its exotic system of rings coaxial to the HH540 jet's axis. Bally et al. (2005) suggested that the rings are perturbations due to the crossing of the ionization front by the jet. In this work, we test this hypothesis making 3D hydrodynamic numerical simulations over an adaptive grid, using the Yguazú-A code (Raga et al., 2000), properly adapted for the Beehive conditions. Our results show that the jet causes a perturbation in the ionization front of the proplyd, but is necessary to adjust carefully some parameters of the jet like its velocity and ejection frequency in order to have the results matching the observations.

  2. HII Galaxies in 3D

    NASA Astrophysics Data System (ADS)

    Telles, E.

    2016-06-01

    In this contribution I review some results of the integral field spectroscopy of HII galaxies. The two main topics are related to their internal kinematics and the distribution of physical conditions. HII galaxies present a L-σ relation similar to elliptical galaxies. However, the origin of supersonic motions of the ionized gas (σ) is still a matter of debate. We show that the core of the star forming region dominates the internal kinematics and probes the underlying turbulent motions. The show our latest calibration of the L-sigma relation of local HII galaxies. We also show that the physical conditions are very uniform throughout the whole extent of the star forming region, once you account for the levels of ionization. HII galaxies are excellent laboratories for constraining the ionization power of high mass stars at low metallicities.

  3. The use of harmonics in 3-D magnetic fields

    SciTech Connect

    Caspi, S.; Helm, M.; Laslett, L.J.

    1993-09-01

    Motivated by the need for new means for specification and determination of 3-D fields that are produced by electromagnetic lens elements in the region interior to coil windings and seeking to obtain techniques that will be convenient for accurate conductor placement and dynamical study of particle motion, the authors have generalized the representation of a 2-D magnetic field to 3-D. They have shown that the 3-D magnetic field components of a multipole magnet in the curl-free divergence-free region near the axis r = 0 can be derived from one dimensional functions A{sub n}(z) and their derivatives. In this report they apply both methods to the ``end`` region of a 40 mm bore SSC quadrupole, calculating first the field harmonics and then reconstructing the field comparing both results with direct Biot-Savart calculation.

  4. Digital 3D Borobudur - Integration of 3D surveying and modeling techniques

    NASA Astrophysics Data System (ADS)

    Suwardhi, D.; Menna, F.; Remondino, F.; Hanke, K.; Akmalia, R.

    2015-08-01

    The Borobudur temple (Indonesia) is one of the greatest Buddhist monuments in the world, now listed as an UNESCO World Heritage Site. The present state of the temple is the result of restorations after being exposed to natural disasters several times. Today there is still a growing rate of deterioration of the building stones whose causes need further researches. Monitoring programs, supported at institutional level, have been effectively executed to observe the problem. The paper presents the latest efforts to digitally document the Borobudur Temple and its surrounding area in 3D with photogrammetric techniques. UAV and terrestrial images were acquired to completely digitize the temple, produce DEM, orthoimages and maps at 1:100 and 1:1000 scale. The results of the project are now employed by the local government organizations to manage the heritage area and plan new policies for the conservation and preservation of the UNESCO site. In order to help data management and policy makers, a web-based information system of the heritage area was also built to visualize and easily access all the data and achieved 3D results.

  5. FlexyDos3D: a deformable anthropomorphic 3D radiation dosimeter: radiation properties

    NASA Astrophysics Data System (ADS)

    De Deene, Y.; Skyt, P. S.; Hil, R.; Booth, J. T.

    2015-02-01

    Three dimensional radiation dosimetry has received growing interest with the implementation of highly conformal radiotherapy treatments. The radiotherapy community faces new challenges with the commissioning of image guided and image gated radiotherapy treatments (IGRT) and deformable image registration software. A new three dimensional anthropomorphically shaped flexible dosimeter, further called ‘FlexyDos3D’, has been constructed and a new fast optical scanning method has been implemented that enables scanning of irregular shaped dosimeters. The FlexyDos3D phantom can be actuated and deformed during the actual treatment. FlexyDos3D offers the additional advantage that it is easy to fabricate, is non-toxic and can be molded in an arbitrary shape with high geometrical precision. The dosimeter formulation has been optimized in terms of dose sensitivity. The influence of the casting material and oxygen concentration has also been investigated. The radiophysical properties of this new dosimeter are discussed including stability, spatial integrity, temperature dependence of the dosimeter during radiation, readout and storage, dose rate dependence and tissue equivalence. The first authors Y De Deene and P S Skyt made an equivalent contribution to the experimental work presented in this paper.

  6. Simulating coronal condensation dynamics in 3D

    NASA Astrophysics Data System (ADS)

    Moschou, S. P.; Keppens, R.; Xia, C.; Fang, X.

    2015-12-01

    We present numerical simulations in 3D settings where coronal rain phenomena take place in a magnetic configuration of a quadrupolar arcade system. Our simulation is a magnetohydrodynamic simulation including anisotropic thermal conduction, optically thin radiative losses, and parametrised heating as main thermodynamical features to construct a realistic arcade configuration from chromospheric to coronal heights. The plasma evaporation from chromospheric and transition region heights eventually causes localised runaway condensation events and we witness the formation of plasma blobs due to thermal instability, that evolve dynamically in the heated arcade part and move gradually downwards due to interchange type dynamics. Unlike earlier 2.5D simulations, in this case there is no large scale prominence formation observed, but a continuous coronal rain develops which shows clear indications of Rayleigh-Taylor or interchange instability, that causes the denser plasma located above the transition region to fall down, as the system moves towards a more stable state. Linear stability analysis is used in the non-linear regime for gaining insight and giving a prediction of the system's evolution. After the plasma blobs descend through interchange, they follow the magnetic field topology more closely in the lower coronal regions, where they are guided by the magnetic dips.

  7. Initial Efficacy Results of RTOG 0319: Three-Dimensional Conformal Radiation Therapy (3D-CRT) Confined to the Region of the Lumpectomy Cavity for Stage I/ II Breast Carcinoma

    SciTech Connect

    Vicini, Frank; Winter, Kathryn; Wong, John

    2010-07-15

    Purpose: This prospective study (Radiation Therapy Oncology Group 0319) examines the use of three-dimensional conformal external beam radiotherapy (3D-CRT) to deliver accelerated partial breast irradiation (APBI). Initial data on efficacy and toxicity are presented. Methods and Materials: Patients with Stage I or II breast cancer with lesions {<=}3 cm, negative margins and with {<=}3 positive nodes were eligible. The 3D-CRT was 38.5 Gy in 3.85 Gy/fraction delivered 2x/day. Ipsilateral breast, ipsilateral nodal, contralateral breast, and distant failure (IBF, INF, CBF, DF) were estimated using the cumulative incidence method. Mastectomy-free, disease-free, and overall survival (MFS, DFS, OS) were recorded. The National Cancer Institute Common Terminology Criteria for Adverse Events, version 3, was used to grade acute and late toxicity. Results: Fifty-eight patients were entered and 52 patients are eligible and evaluable for efficacy. The median age of patients was 61 years with the following characteristics: 46% tumor size <1 cm; 87% invasive ductal histology; 94% American Joint Committee on Cancer Stage I; 65% postmenopausal; 83% no chemotherapy; and 71% with no hormone therapy. Median follow-up is 4.5 years (1.7-4.8). Four-year estimates (95% CI) of efficacy are: IBF 6% (0-12%) [4% within field (0-9%)]; INF 2% (0-6%); CBF 0%; DF 8% (0-15%); MFS 90% (78-96%); DFS 84% (71-92%); and OS 96% (85-99%). Only two (4%) Grade 3 toxicities were observed. Conclusions: Initial efficacy and toxicity using 3D-CRT to deliver APBI appears comparable to other experiences with similar follow-up. However, additional patients, further follow-up, and mature Phase III data are needed to evaluate the extent of application, limitations, and value of this particular form of APBI.

  8. 3-D Technology Approaches for Biological Ecologies

    NASA Astrophysics Data System (ADS)

    Liu, Liyu; Austin, Robert; U. S-China Physical-Oncology Sciences Alliance (PS-OA) Team

    Constructing three dimensional (3-D) landscapes is an inevitable issue in deep study of biological ecologies, because in whatever scales in nature, all of the ecosystems are composed by complex 3-D environments and biological behaviors. Just imagine if a 3-D technology could help complex ecosystems be built easily and mimic in vivo microenvironment realistically with flexible environmental controls, it will be a fantastic and powerful thrust to assist researchers for explorations. For years, we have been utilizing and developing different technologies for constructing 3-D micro landscapes for biophysics studies in in vitro. Here, I will review our past efforts, including probing cancer cell invasiveness with 3-D silicon based Tepuis, constructing 3-D microenvironment for cell invasion and metastasis through polydimethylsiloxane (PDMS) soft lithography, as well as explorations of optimized stenting positions for coronary bifurcation disease with 3-D wax printing and the latest home designed 3-D bio-printer. Although 3-D technologies is currently considered not mature enough for arbitrary 3-D micro-ecological models with easy design and fabrication, I hope through my talk, the audiences will be able to sense its significance and predictable breakthroughs in the near future. This work was supported by the State Key Development Program for Basic Research of China (Grant No. 2013CB837200), the National Natural Science Foundation of China (Grant No. 11474345) and the Beijing Natural Science Foundation (Grant No. 7154221).

  9. RT3D tutorials for GMS users

    SciTech Connect

    Clement, T.P.; Jones, N.L.

    1998-02-01

    RT3D (Reactive Transport in 3-Dimensions) is a computer code that solves coupled partial differential equations that describe reactive-flow and transport of multiple mobile and/or immobile species in a three dimensional saturated porous media. RT3D was developed from the single-species transport code, MT3D (DoD-1.5, 1997 version). As with MT3D, RT3D also uses the USGS groundwater flow model MODFLOW for computing spatial and temporal variations in groundwater head distribution. This report presents a set of tutorial problems that are designed to illustrate how RT3D simulations can be performed within the Department of Defense Groundwater Modeling System (GMS). GMS serves as a pre- and post-processing interface for RT3D. GMS can be used to define all the input files needed by RT3D code, and later the code can be launched from within GMS and run as a separate application. Once the RT3D simulation is completed, the solution can be imported to GMS for graphical post-processing. RT3D v1.0 supports several reaction packages that can be used for simulating different types of reactive contaminants. Each of the tutorials, described below, provides training on a different RT3D reaction package. Each reaction package has different input requirements, and the tutorials are designed to describe these differences. Furthermore, the tutorials illustrate the various options available in GMS for graphical post-processing of RT3D results. Users are strongly encouraged to complete the tutorials before attempting to use RT3D and GMS on a routine basis.

  10. 3D surface digitizing and modeling development at ITRI

    NASA Astrophysics Data System (ADS)

    Hsueh, Wen-Jean

    2000-06-01

    This paper gives an overview of the research and development activities in 3D surface digitizing and modeling conducted at the Industrial Technology Research Institute (ITRI) of Taiwan in the past decade. As a major technology and consulting service provider of the area, ITRI has developed 3D laser scanning digitizers ranging from low-cost compacts, industrial CAD/CAM digitizing, to large human body scanner, with in-house 3D surface modeling software to provide total solution in reverse engineering that requires processing capabilities of large number of 3D data. Based on both hardware and software technologies in scanning, merging, registration, surface fitting, reconstruction, and compression, ITRI is now exploring innovative methodologies that provide higher performances, including hardware-based correlation algorithms with advanced camera designs, animation surface model reconstruction, and optical tracking for motion capture. It is expected that the need for easy and fast high-quality 3D information in the near future will grow exponentially, at the same amazing rate as the internet and the human desire for realistic and natural images.

  11. Sockeye: a 3D environment for comparative genomics.

    PubMed

    Montgomery, Stephen B; Astakhova, Tamara; Bilenky, Mikhail; Birney, Ewan; Fu, Tony; Hassel, Maik; Melsopp, Craig; Rak, Marcin; Robertson, A Gordon; Sleumer, Monica; Siddiqui, Asim S; Jones, Steven J M

    2004-05-01

    Comparative genomics techniques are used in bioinformatics analyses to identify the structural and functional properties of DNA sequences. As the amount of available sequence data steadily increases, the ability to perform large-scale comparative analyses has become increasingly relevant. In addition, the growing complexity of genomic feature annotation means that new approaches to genomic visualization need to be explored. We have developed a Java-based application called Sockeye that uses three-dimensional (3D) graphics technology to facilitate the visualization of annotation and conservation across multiple sequences. This software uses the Ensembl database project to import sequence and annotation information from several eukaryotic species. A user can additionally import their own custom sequence and annotation data. Individual annotation objects are displayed in Sockeye by using custom 3D models. Ensembl-derived and imported sequences can be analyzed by using a suite of multiple and pair-wise alignment algorithms. The results of these comparative analyses are also displayed in the 3D environment of Sockeye. By using the Java3D API to visualize genomic data in a 3D environment, we are able to compactly display cross-sequence comparisons. This provides the user with a novel platform for visualizing and comparing genomic feature organization. PMID:15123592

  12. 3D Stratigraphic Modeling of Central Aachen

    NASA Astrophysics Data System (ADS)

    Dong, M.; Neukum, C.; Azzam, R.; Hu, H.

    2010-05-01

    Since 1980s, advanced computer hardware and software technologies, as well as multidisciplinary research have provided possibilities to develop advanced three dimensional (3D) simulation software for geosciences application. Some countries, such as USA1) and Canada2) 3), have built up regional 3D geological models based on archival geological data. Such models have played huge roles in engineering geology2), hydrogeology2) 3), geothermal industry1) and so on. In cooperating with the Municipality of Aachen, the Department of Engineering Geology of RWTH Aachen University have built up a computer-based 3D stratigraphic model of 50 meter' depth for the center of Aachen, which is a 5 km by 7 km geologically complex area. The uncorrelated data from multi-resources, discontinuous nature and unconformable connection of the units are main challenges for geological modeling in this area. The reliability of 3D geological models largely depends on the quality and quantity of data. Existing 1D and 2D geological data were collected, including 1) approximately 6970 borehole data of different depth compiled in Microsoft Access database and MapInfo database; 2) a Digital Elevation Model (DEM); 3) geological cross sections; and 4) stratigraphic maps in 1m, 2m and 5m depth. Since acquired data are of variable origins, they were managed step by step. The main processes are described below: 1) Typing errors of borehole data were identified and the corrected data were exported to Variowin2.2 to distinguish duplicate points; 2) The surface elevation of borehole data was compared to the DEM, and differences larger than 3m were eliminated. Moreover, where elevation data missed, it was read from the DEM; 3) Considerable data were collected from municipal constructions, such as residential buildings, factories, and roads. Therefore, many boreholes are spatially clustered, and only one or two representative points were picked out in such areas; After above procedures, 5839 boreholes with -x

  13. The 3D Elevation Program: summary for Alaska

    USGS Publications Warehouse

    Carswell, William J., Jr.

    2013-01-01

    Coordination by SDMI and AMEC avoids duplication of effort and ensures a unified approach to consistent, statewide data acquisition; the enhancement of existing data; and support for emerging applications. The 3D Elevation Program (3DEP) initiative, managed by the U.S. Geological Survey (USGS), responds to the growing need for high-quality topographic data and a wide range of other three-dimensional representations of the Nation’s natural and constructed features.

  14. 3D hybrid wound devices for spatiotemporally controlled release kinetics.

    PubMed

    Ozbolat, Ibrahim T; Koc, Bahattin

    2012-12-01

    This paper presents localized and temporal control of release kinetics over 3-dimensional (3D) hybrid wound devices to improve wound-healing process. Imaging study is performed to extract wound bed geometry in 3D. Non-Uniform Rational B-Splines (NURBS) based surface lofting is applied to generate functionally graded regions. Diffusion-based release kinetics model is developed to predict time-based release of loaded modifiers for functionally graded regions. Multi-chamber single nozzle solid freeform dispensing system is used to fabricate wound devices with controlled dispensing concentration. Spatiotemporal control of biological modifiers thus enables a way to achieve target delivery to improve wound healing. PMID:22672934

  15. 3D Dynamic Echocardiography with a Digitizer

    NASA Astrophysics Data System (ADS)

    Oshiro, Osamu; Matani, Ayumu; Chihara, Kunihiro

    1998-05-01

    In this paper,a three-dimensional (3D) dynamic ultrasound (US) imaging system,where a US brightness-mode (B-mode) imagetriggered with an R-wave of electrocardiogram (ECG)was obtained with an ultrasound diagnostic deviceand the location and orientation of the US probewere simultaneously measured with a 3D digitizer, is described.The obtained B-mode imagewas then projected onto a virtual 3D spacewith the proposed interpolation algorithm using a Gaussian operator.Furthermore, a 3D image was presented on a cathode ray tube (CRT)and stored in virtual reality modeling language (VRML).We performed an experimentto reconstruct a 3D heart image in systole using this system.The experimental results indicatethat the system enables the visualization ofthe 3D and internal structure of a heart viewed from any angleand has potential for use in dynamic imaging,intraoperative ultrasonography and tele-medicine.

  16. 3D Structured Grid Adaptation

    NASA Technical Reports Server (NTRS)

    Banks, D. W.; Hafez, M. M.

    1996-01-01

    Grid adaptation for structured meshes is the art of using information from an existing, but poorly resolved, solution to automatically redistribute the grid points in such a way as to improve the resolution in regions of high error, and thus the quality of the solution. This involves: (1) generate a grid vis some standard algorithm, (2) calculate a solution on this grid, (3) adapt the grid to this solution, (4) recalculate the solution on this adapted grid, and (5) repeat steps 3 and 4 to satisfaction. Steps 3 and 4 can be repeated until some 'optimal' grid is converged to but typically this is not worth the effort and just two or three repeat calculations are necessary. They also may be repeated every 5-10 time steps for unsteady calculations.

  17. 3D Scientific Visualization with Blender

    NASA Astrophysics Data System (ADS)

    Kent, Brian R.

    2015-03-01

    This is the first book written on using Blender for scientific visualization. It is a practical and interesting introduction to Blender for understanding key parts of 3D rendering and animation that pertain to the sciences via step-by-step guided tutorials. 3D Scientific Visualization with Blender takes you through an understanding of 3D graphics and modelling for different visualization scenarios in the physical sciences.

  18. Software for 3D radiotherapy dosimetry. Validation

    NASA Astrophysics Data System (ADS)

    Kozicki, Marek; Maras, Piotr; Karwowski, Andrzej C.

    2014-08-01

    The subject of this work is polyGeVero® software (GeVero Co., Poland), which has been developed to fill the requirements of fast calculations of 3D dosimetry data with the emphasis on polymer gel dosimetry for radiotherapy. This software comprises four workspaces that have been prepared for: (i) calculating calibration curves and calibration equations, (ii) storing the calibration characteristics of the 3D dosimeters, (iii) calculating 3D dose distributions in irradiated 3D dosimeters, and (iv) comparing 3D dose distributions obtained from measurements with the aid of 3D dosimeters and calculated with the aid of treatment planning systems (TPSs). The main features and functions of the software are described in this work. Moreover, the core algorithms were validated and the results are presented. The validation was performed using the data of the new PABIGnx polymer gel dosimeter. The polyGeVero® software simplifies and greatly accelerates the calculations of raw 3D dosimetry data. It is an effective tool for fast verification of TPS-generated plans for tumor irradiation when combined with a 3D dosimeter. Consequently, the software may facilitate calculations by the 3D dosimetry community. In this work, the calibration characteristics of the PABIGnx obtained through four calibration methods: multi vial, cross beam, depth dose, and brachytherapy, are discussed as well.

  19. Dimensional accuracy of 3D printed vertebra

    NASA Astrophysics Data System (ADS)

    Ogden, Kent; Ordway, Nathaniel; Diallo, Dalanda; Tillapaugh-Fay, Gwen; Aslan, Can

    2014-03-01

    3D printer applications in the biomedical sciences and medical imaging are expanding and will have an increasing impact on the practice of medicine. Orthopedic and reconstructive surgery has been an obvious area for development of 3D printer applications as the segmentation of bony anatomy to generate printable models is relatively straightforward. There are important issues that should be addressed when using 3D printed models for applications that may affect patient care; in particular the dimensional accuracy of the printed parts needs to be high to avoid poor decisions being made prior to surgery or therapeutic procedures. In this work, the dimensional accuracy of 3D printed vertebral bodies derived from CT data for a cadaver spine is compared with direct measurements on the ex-vivo vertebra and with measurements made on the 3D rendered vertebra using commercial 3D image processing software. The vertebra was printed on a consumer grade 3D printer using an additive print process using PLA (polylactic acid) filament. Measurements were made for 15 different anatomic features of the vertebral body, including vertebral body height, endplate width and depth, pedicle height and width, and spinal canal width and depth, among others. It is shown that for the segmentation and printing process used, the results of measurements made on the 3D printed vertebral body are substantially the same as those produced by direct measurement on the vertebra and measurements made on the 3D rendered vertebra.

  20. Stereo 3-D Vision in Teaching Physics

    NASA Astrophysics Data System (ADS)

    Zabunov, Svetoslav

    2012-03-01

    Stereo 3-D vision is a technology used to present images on a flat surface (screen, paper, etc.) and at the same time to create the notion of three-dimensional spatial perception of the viewed scene. A great number of physical processes are much better understood when viewed in stereo 3-D vision compared to standard flat 2-D presentation. The current paper describes the modern stereo 3-D technologies that are applicable to various tasks in teaching physics in schools, colleges, and universities. Examples of stereo 3-D simulations developed by the author can be observed on online.

  1. Accuracy in Quantitative 3D Image Analysis

    PubMed Central

    Bassel, George W.

    2015-01-01

    Quantitative 3D imaging is becoming an increasingly popular and powerful approach to investigate plant growth and development. With the increased use of 3D image analysis, standards to ensure the accuracy and reproducibility of these data are required. This commentary highlights how image acquisition and postprocessing can introduce artifacts into 3D image data and proposes steps to increase both the accuracy and reproducibility of these analyses. It is intended to aid researchers entering the field of 3D image processing of plant cells and tissues and to help general readers in understanding and evaluating such data. PMID:25804539

  2. Calculations of the integral invariant coordinates I and L* in the magnetosphere and mapping of the regions where I is conserved, using a particle tracer (ptr3D v2.0), LANL*, SPENVIS, and IRBEM

    NASA Astrophysics Data System (ADS)

    Konstantinidis, K.; Sarris, T.

    2015-09-01

    The integral invariant coordinate I and Roederer's L or L* are proxies for the second and third adiabatic invariants, respectively, that characterize charged particle motion in a magnetic field. Their usefulness lies in the fact that they are expressed in more instructive ways than their counterparts: I is equivalent to the path length of the particle motion between two mirror points, whereas L*, although dimensionless, is equivalent to the distance from the center of the Earth to the equatorial point of a given field line, in units of Earth radii, in the simplified case of a dipole magnetic field. However, care should be taken when calculating the above invariants, as the assumption of their conservation is not valid everywhere in the Earth's magnetosphere. This is not clearly stated in state-of-the-art models that are widely used for the calculation of these invariants. The purpose of this work is thus to investigate where in the near-Earth magnetosphere we can safely calculate I and L* with tools with widespread use in the field of space physics, for various magnetospheric conditions and particle initial conditions. More particularly, in this paper we compare the values of I and L* as calculated using LANL*, an artificial neural network developed at the Los Alamos National Laboratory, SPENVIS, a space environment online tool, IRBEM, a software library dedicated to radiation belt modeling, and ptr3D, a 3-D particle tracing code that was developed for this study. We then attempt to quantify the variations between the calculations of I and L* of those models. The deviation between the results given by the models depends on particle initial position, pitch angle and magnetospheric conditions. Using the ptr3D v2.0 particle tracer we map the areas in the Earth's magnetosphere where I and L* can be assumed to be conserved by monitoring the constancy of I for energetic protons propagating forwards and backwards in time. These areas are found to be centered on the noon

  3. 3D Location of Small Solar Wind Tracers

    NASA Astrophysics Data System (ADS)

    Lopez-Portela, C.; Blanco-Cano, X.; Panasenco, O.; Gibson, S. E.

    2014-12-01

    The so-called "blobs" as defined in Sheeley et al., 1997, are small-scale structures embedded in the continuously expanding white-light solar corona and are considered to be tracers of the slow solar wind. As blobs are very faint structures, we considered long periods (around 2 to 5 days) where there were no coronal mass ejections (CME). The scarce presence of CMEs during the extended past solar minimum has permitted the identification of continuous blobs detachments, allowing us to estimate their un-projected trajectories between 2 and 15 solar radii (Mierla et al., 2008). In agreement with the idea that blobs are liberated from the cusps of helmet steamers (Wang et al., 1998), we constrained the observing region of interest in the coronagraphs field of view to ±30° from the Sun's equator. We studied cases where blobs were detected by the coronagraphs C2/LASCO and COR2/SECCHI, and inferred their source locations using two packages that implement the 3D potential field source surface (PFSS) model: (1) PFSS developed by De Rosa (2010) and (2) PFSS (De Rosa) in FORWARD (people.hao.ucar.edu/sgibson/FORWARD/). The locations of the origin of blobs that we find, support previous results that track down the origin of the slow solar wind to regions near the helmet streamers and pseudostreamers (Wang et al., 2012, Riley&Luhmann, 2012). Additionally, we found that in some cases blobs are coming from the boundaries of growing or decaying equatorial coronal holes, where the interchange reconnection issupposed to be faster.

  4. Low Complexity Mode Decision for 3D-HEVC

    PubMed Central

    Li, Nana; Gan, Yong

    2014-01-01

    High efficiency video coding- (HEVC-) based 3D video coding (3D-HEVC) developed by joint collaborative team on 3D video coding (JCT-3V) for multiview video and depth map is an extension of HEVC standard. In the test model of 3D-HEVC, variable coding unit (CU) size decision and disparity estimation (DE) are introduced to achieve the highest coding efficiency with the cost of very high computational complexity. In this paper, a fast mode decision algorithm based on variable size CU and DE is proposed to reduce 3D-HEVC computational complexity. The basic idea of the method is to utilize the correlations between depth map and motion activity in prediction mode where variable size CU and DE are needed, and only in these regions variable size CU and DE are enabled. Experimental results show that the proposed algorithm can save about 43% average computational complexity of 3D-HEVC while maintaining almost the same rate-distortion (RD) performance. PMID:25254237

  5. FastScript3D - A Companion to Java 3D

    NASA Technical Reports Server (NTRS)

    Koenig, Patti

    2005-01-01

    FastScript3D is a computer program, written in the Java 3D(TM) programming language, that establishes an alternative language that helps users who lack expertise in Java 3D to use Java 3D for constructing three-dimensional (3D)-appearing graphics. The FastScript3D language provides a set of simple, intuitive, one-line text-string commands for creating, controlling, and animating 3D models. The first word in a string is the name of a command; the rest of the string contains the data arguments for the command. The commands can also be used as an aid to learning Java 3D. Developers can extend the language by adding custom text-string commands. The commands can define new 3D objects or load representations of 3D objects from files in formats compatible with such other software systems as X3D. The text strings can be easily integrated into other languages. FastScript3D facilitates communication between scripting languages [which enable programming of hyper-text markup language (HTML) documents to interact with users] and Java 3D. The FastScript3D language can be extended and customized on both the scripting side and the Java 3D side.

  6. Time-lapse 3D electrical resistivity tomography to monitor soil-plant interactions

    NASA Astrophysics Data System (ADS)

    Boaga, Jacopo; Rossi, Matteo; Cassiani, Giorgio; Putti, Mario

    2013-04-01

    In this work we present the application of time-lapse non-invasive 3D micro- electrical tomography (ERT) to monitor soil-plant interactions in the root zone in the framework of the FP7 Project CLIMB (Climate Induced Changes on the Hydrology of Mediterranean Basins). The goal of the study is to gain a better understanding of the soil-vegetation interactions by the use of non-invasive techniques. We designed, built and installed a 3D electrical tomography apparatus for the monitoring of the root zone of a single apple tree in an orchard located in the Trentino region, Northern Italy. The micro-ERT apparatus consists of 48 buried electrodes on 4 instrumented micro boreholes plus 24 mini-electrodes on the surface spaced 0.1 m on a square grid. We collected repeated ERT and TDR soil moisture measurements for one year and performed two different controlled irrigation tests: one during a very dry Summer and one during a very wet and highly dynamic plant growing Spring period. We also ran laboratory analyses on soil specimens, in order to evaluate the electrical response at different saturation steps. The results demonstrate that 3D micro-ERT is capable of characterizing subsoil conditions and monitoring root zone activities, especially in terms of root zone suction regions. In particular, we note that in very dry conditions, 3D micro ERT can image water plumes in the shallow subsoil produced by a drip irrigation system. In the very dynamic growing season, under abundant irrigation, micro 3D ERT can detect the main suction zones caused by the tree root activity. Even though the quantitative use of this technique for moisture content balance suffers from well-known inversion difficulties, even the pure imaging of the active root zone is a valuable contribution. However the integration of the measurements in a fully coupled hydrogeophysical inversion is the way forward for a better understanding of subsoil interactions between biomass, hydrosphere and atmosphere.

  7. 3D PDF - a means of public access to geological 3D - objects, using the example of GTA3D

    NASA Astrophysics Data System (ADS)

    Slaby, Mark-Fabian; Reimann, Rüdiger

    2013-04-01

    In geology, 3D modeling has become very important. In the past, two-dimensional data such as isolines, drilling profiles, or cross-sections based on those, were used to illustrate the subsurface geology, whereas now, we can create complex digital 3D models. These models are produced with special software, such as GOCAD ®. The models can be viewed, only through the software used to create them, or through viewers available for free. The platform-independent PDF (Portable Document Format), enforced by Adobe, has found a wide distribution. This format has constantly evolved over time. Meanwhile, it is possible to display CAD data in an Adobe 3D PDF file with the free Adobe Reader (version 7). In a 3D PDF, a 3D model is freely rotatable and can be assembled from a plurality of objects, which can thus be viewed from all directions on their own. In addition, it is possible to create moveable cross-sections (profiles), and to assign transparency to the objects. Based on industry-standard CAD software, 3D PDFs can be generated from a large number of formats, or even be exported directly from this software. In geoinformatics, different approaches to creating 3D PDFs exist. The intent of the Authority for Mining, Energy and Geology to allow free access to the models of the Geotectonic Atlas (GTA3D), could not be realized with standard software solutions. A specially designed code converts the 3D objects to VRML (Virtual Reality Modeling Language). VRML is one of the few formats that allow using image files (maps) as textures, and to represent colors and shapes correctly. The files were merged in Acrobat X Pro, and a 3D PDF was generated subsequently. A topographic map, a display of geographic directions and horizontal and vertical scales help to facilitate the use.

  8. Relative Prevalence of Grapevine Leafroll-Associated Virus Species in Wine Grape-Growing Regions of California.

    PubMed

    Sharma, Abhineet M; Baraff, Breanna; Hutchins, John T; Wong, Michelle K; Blaisdell, G Kai; Cooper, Monica L; Daane, Kent M; Almeida, Rodrigo P P

    2015-01-01

    Some diseases manifest as one characteristic set of symptoms to the host, but can be caused by multiple pathogens. Control treatments based on plant symptoms can make it difficult to effectively manage such diseases, as the biology of the underlying pathogens can vary. Grapevine leafroll disease affects grapes worldwide, and is associated with several viral species in the family Closteroviridae. Whereas some of the viruses associated with this disease are transmitted by insect vectors, others are only graft-transmissible. In three regions of California, we surveyed vineyards containing diseased vines and screened symptomatic plants for all known viral species associated with grapevine leafroll disease. Relative incidence of each virus species differed among the three regions regions, particularly in relation to species with known vectors compared with those only known to be graft-transmitted. In one region, the pathogen population was dominated by species not known to have an insect vector. In contrast, populations in the other surveyed regions were dominated by virus species that are vector-transmissible. Our survey did not detect viruses associated with grapevine leafroll disease at some sites with characteristic disease symptoms. This could be explained either by undescribed genetic diversity among these viruses that prevented detection with available molecular tools at the time the survey was performed, or a misidentification of visual symptoms that may have had other underlying causes. Based on the differences in relative prevalence of each virus species among regions and among vineyards within regions, we expect that region and site-specific management strategies are needed for effective disease control. PMID:26529503

  9. Relative Prevalence of Grapevine Leafroll-Associated Virus Species in Wine Grape-Growing Regions of California

    PubMed Central

    Sharma, Abhineet M.; Baraff, Breanna; Hutchins, John T.; Wong, Michelle K.; Blaisdell, G. Kai; Cooper, Monica L.; Daane, Kent M.; Almeida, Rodrigo P. P.

    2015-01-01

    Some diseases manifest as one characteristic set of symptoms to the host, but can be caused by multiple pathogens. Control treatments based on plant symptoms can make it difficult to effectively manage such diseases, as the biology of the underlying pathogens can vary. Grapevine leafroll disease affects grapes worldwide, and is associated with several viral species in the family Closteroviridae. Whereas some of the viruses associated with this disease are transmitted by insect vectors, others are only graft-transmissible. In three regions of California, we surveyed vineyards containing diseased vines and screened symptomatic plants for all known viral species associated with grapevine leafroll disease. Relative incidence of each virus species differed among the three regions regions, particularly in relation to species with known vectors compared with those only known to be graft-transmitted. In one region, the pathogen population was dominated by species not known to have an insect vector. In contrast, populations in the other surveyed regions were dominated by virus species that are vector-transmissible. Our survey did not detect viruses associated with grapevine leafroll disease at some sites with characteristic disease symptoms. This could be explained either by undescribed genetic diversity among these viruses that prevented detection with available molecular tools at the time the survey was performed, or a misidentification of visual symptoms that may have had other underlying causes. Based on the differences in relative prevalence of each virus species among regions and among vineyards within regions, we expect that region and site-specific management strategies are needed for effective disease control. PMID:26529503

  10. An aerial 3D printing test mission

    NASA Astrophysics Data System (ADS)

    Hirsch, Michael; McGuire, Thomas; Parsons, Michael; Leake, Skye; Straub, Jeremy

    2016-05-01

    This paper provides an overview of an aerial 3D printing technology, its development and its testing. This technology is potentially useful in its own right. In addition, this work advances the development of a related in-space 3D printing technology. A series of aerial 3D printing test missions, used to test the aerial printing technology, are discussed. Through completing these test missions, the design for an in-space 3D printer may be advanced. The current design for the in-space 3D printer involves focusing thermal energy to heat an extrusion head and allow for the extrusion of molten print material. Plastics can be used as well as composites including metal, allowing for the extrusion of conductive material. A variety of experiments will be used to test this initial 3D printer design. High altitude balloons will be used to test the effects of microgravity on 3D printing, as well as parabolic flight tests. Zero pressure balloons can be used to test the effect of long 3D printing missions subjected to low temperatures. Vacuum chambers will be used to test 3D printing in a vacuum environment. The results will be used to adapt a current prototype of an in-space 3D printer. Then, a small scale prototype can be sent into low-Earth orbit as a 3-U cube satellite. With the ability to 3D print in space demonstrated, future missions can launch production hardware through which the sustainability and durability of structures in space will be greatly improved.

  11. 3D ultrafast ultrasound imaging in vivo

    NASA Astrophysics Data System (ADS)

    Provost, Jean; Papadacci, Clement; Esteban Arango, Juan; Imbault, Marion; Fink, Mathias; Gennisson, Jean-Luc; Tanter, Mickael; Pernot, Mathieu

    2014-10-01

    Very high frame rate ultrasound imaging has recently allowed for the extension of the applications of echography to new fields of study such as the functional imaging of the brain, cardiac electrophysiology, and the quantitative imaging of the intrinsic mechanical properties of tumors, to name a few, non-invasively and in real time. In this study, we present the first implementation of Ultrafast Ultrasound Imaging in 3D based on the use of either diverging or plane waves emanating from a sparse virtual array located behind the probe. It achieves high contrast and resolution while maintaining imaging rates of thousands of volumes per second. A customized portable ultrasound system was developed to sample 1024 independent channels and to drive a 32  ×  32 matrix-array probe. Its ability to track in 3D transient phenomena occurring in the millisecond range within a single ultrafast acquisition was demonstrated for 3D Shear-Wave Imaging, 3D Ultrafast Doppler Imaging, and, finally, 3D Ultrafast combined Tissue and Flow Doppler Imaging. The propagation of shear waves was tracked in a phantom and used to characterize its stiffness. 3D Ultrafast Doppler was used to obtain 3D maps of Pulsed Doppler, Color Doppler, and Power Doppler quantities in a single acquisition and revealed, at thousands of volumes per second, the complex 3D flow patterns occurring in the ventricles of the human heart during an entire cardiac cycle, as well as the 3D in vivo interaction of blood flow and wall motion during the pulse wave in the carotid at the bifurcation. This study demonstrates the potential of 3D Ultrafast Ultrasound Imaging for the 3D mapping of stiffness, tissue motion, and flow in humans in vivo and promises new clinical applications of ultrasound with reduced intra—and inter-observer variability.

  12. Clinical application of 3D imaging for assessment of treatment outcomes

    PubMed Central

    Cevidanes, Lucia H.C.; Oliveira, Ana Emilia Figueiredo; Grauer, Dan; Styner, Martin; Proffit, William R.

    2011-01-01

    This paper outlines the clinical application of CBCT for assessment of treatment outcomes, and discusses current work to superimpose digital dental models and 3D photographs. Superimposition of CBCTs on stable structures of reference now allow assessment of 3D dental, skeletal and soft tissue changes for both growing and non-growing patients. Additionally, we describe clinical findings from CBCT superimpositions in assessment of surgery and skeletal anchorage treatment. PMID:21516170

  13. 3-D Mixed Mode Delamination Fracture Criteria - An Experimentalist's Perspective

    NASA Technical Reports Server (NTRS)

    Reeder, James R.

    2006-01-01

    Many delamination failure criteria based on fracture toughness have been suggested over the past few decades, but most only covered the region containing mode I and mode II components of loading because that is where toughness data existed. With new analysis tools, more 3D analyses are being conducted that capture a mode III component of loading. This has increased the need for a fracture criterion that incorporates mode III loading. The introduction of a pure mode III fracture toughness test has also produced data on which to base a full 3D fracture criterion. In this paper, a new framework for visualizing 3D fracture criteria is introduced. The common 2D power law fracture criterion was evaluated to produce unexpected predictions with the introduction of mode III and did not perform well in the critical high mode I region. Another 2D criterion that has been shown to model a wide range of materials well was used as the basis for a new 3D criterion. The new criterion is based on assumptions that the relationship between mode I and mode III toughness is similar to the relation between mode I and mode II and that a linear interpolation can be used between mode II and mode III. Until mixed-mode data exists with a mode III component of loading, 3D fracture criteria cannot be properly evaluated, but these assumptions seem reasonable.

  14. The contribution of soil biogenic NO and HONO emissions from a managed hyperarid ecosystem to the regional NOx emissions during growing season

    NASA Astrophysics Data System (ADS)

    Mamtimin, Buhalqem; Meixner, Franz X.; Behrendt, Thomas; Badawy, Moawad; Wagner, Thomas

    2016-08-01

    A study was carried out to understand the contributions of soil biogenic NO emissions from managed (fertilized and irrigated) hyperarid ecosystems in NW China to the regional NOx emissions during the growing season. Soil biogenic net potential NO fluxes were quantified by laboratory incubation of soil samples from the three dominating ecosystems (desert, cotton, and grape fields). Regional biogenic NO emissions were calculated bottom-up hourly for the entire growing season (April-September 2010) by considering corresponding land use, hourly data of soil temperature, gravimetric soil moisture, and fertilizer enhancement factors. The regional HONO emissions were estimated using the ratio of the optimum condition ((FN,opt(HONO) to FN,opt (NO)). Regional anthropogenic NOx emissions were calculated bottom-up from annual statistical data provided by regional and local government bureaus which have been downscaled to monthly value. Regional top-down emission estimates of NOx were derived on the monthly basis from satellite observations (OMI) of tropospheric vertical NO2 column densities and prescribed values of the tropospheric NOx lifetime. In order to compare the top-down and bottom-up emission estimates, all emission estimates were expressed in terms of mass of atomic nitrogen. Consequently, monthly top-down NOx emissions (total) were compared with monthly bottom-up NOx emissions (biogenic + anthropogenic) for the time of the satellite overpass (around 13:00 LT) with the consideration of the diurnal cycle of bottom-up estimates. Annual variation in total Tohsun Oasis NOx emissions is characterized by a strong peak in winter (December-February) and a secondary peak in summer (June-August). During summer, soil biogenic emissions were from equal to double that of related anthropogenic emissions, and grape soils were the main contributor to soil biogenic emissions, followed by cotton soils, while emissions from the desert were negligible. The top-down and bottom

  15. Topology dictionary for 3D video understanding.

    PubMed

    Tung, Tony; Matsuyama, Takashi

    2012-08-01

    This paper presents a novel approach that achieves 3D video understanding. 3D video consists of a stream of 3D models of subjects in motion. The acquisition of long sequences requires large storage space (2 GB for 1 min). Moreover, it is tedious to browse data sets and extract meaningful information. We propose the topology dictionary to encode and describe 3D video content. The model consists of a topology-based shape descriptor dictionary which can be generated from either extracted patterns or training sequences. The model relies on 1) topology description and classification using Reeb graphs, and 2) a Markov motion graph to represent topology change states. We show that the use of Reeb graphs as the high-level topology descriptor is relevant. It allows the dictionary to automatically model complex sequences, whereas other strategies would require prior knowledge on the shape and topology of the captured subjects. Our approach serves to encode 3D video sequences, and can be applied for content-based description and summarization of 3D video sequences. Furthermore, topology class labeling during a learning process enables the system to perform content-based event recognition. Experiments were carried out on various 3D videos. We showcase an application for 3D video progressive summarization using the topology dictionary. PMID:22745004

  16. 3-D seismology in the Arabian Gulf

    SciTech Connect

    Al-Husseini, M.; Chimblo, R.

    1995-08-01

    Since 1977 when Aramco and GSI (Geophysical Services International) pioneered the first 3-D seismic survey in the Arabian Gulf, under the guidance of Aramco`s Chief Geophysicist John Hoke, 3-D seismology has been effectively used to map many complex subsurface geological phenomena. By the mid-1990s extensive 3-D surveys were acquired in Abu Dhabi, Oman, Qatar and Saudi Arabia. Also in the mid-1990`s Bahrain, Kuwait and Dubai were preparing to record surveys over their fields. On the structural side 3-D has refined seismic maps, focused faults and fractures systems, as well as outlined the distribution of facies, porosity and fluid saturation. In field development, 3D has not only reduced drilling costs significantly, but has also improved the understanding of fluid behavior in the reservoir. In Oman, Petroleum Development Oman (PDO) has now acquired the first Gulf 4-D seismic survey (time-lapse 3D survey) over the Yibal Field. The 4-D survey will allow PDO to directly monitor water encroachment in the highly-faulted Cretaceous Shu`aiba reservoir. In exploration, 3-D seismology has resolved complex prospects with structural and stratigraphic complications and reduced the risk in the selection of drilling locations. The many case studies from Saudi Arabia, Oman, Qatar and the United Arab Emirates, which are reviewed in this paper, attest to the effectiveness of 3D seismology in exploration and producing, in clastics and carbonates reservoirs, and in the Mesozoic and Paleozoic.

  17. A 3D Geostatistical Mapping Tool

    1999-02-09

    This software provides accurate 3D reservoir modeling tools and high quality 3D graphics for PC platforms enabling engineers and geologists to better comprehend reservoirs and consequently improve their decisions. The mapping algorithms are fractals, kriging, sequential guassian simulation, and three nearest neighbor methods.

  18. 3D, or Not to Be?

    ERIC Educational Resources Information Center

    Norbury, Keith

    2012-01-01

    It may be too soon for students to be showing up for class with popcorn and gummy bears, but technology similar to that behind the 3D blockbuster movie "Avatar" is slowly finding its way into college classrooms. 3D classroom projectors are taking students on fantastic voyages inside the human body, to the ruins of ancient Greece--even to faraway…

  19. Stereoscopic Investigations of 3D Coulomb Balls

    SciTech Connect

    Kaeding, Sebastian; Melzer, Andre; Arp, Oliver; Block, Dietmar; Piel, Alexander

    2005-10-31

    In dusty plasmas particles are arranged due to the influence of external forces and the Coulomb interaction. Recently Arp et al. were able to generate 3D spherical dust clouds, so-called Coulomb balls. Here, we present measurements that reveal the full 3D particle trajectories from stereoscopic imaging.

  20. 3-D structures of planetary nebulae

    NASA Astrophysics Data System (ADS)

    Steffen, W.

    2016-07-01

    Recent advances in the 3-D reconstruction of planetary nebulae are reviewed. We include not only results for 3-D reconstructions, but also the current techniques in terms of general methods and software. In order to obtain more accurate reconstructions, we suggest to extend the widely used assumption of homologous nebula expansion to map spectroscopically measured velocity to position along the line of sight.

  1. Wow! 3D Content Awakens the Classroom

    ERIC Educational Resources Information Center

    Gordon, Dan

    2010-01-01

    From her first encounter with stereoscopic 3D technology designed for classroom instruction, Megan Timme, principal at Hamilton Park Pacesetter Magnet School in Dallas, sensed it could be transformative. Last spring, when she began pilot-testing 3D content in her third-, fourth- and fifth-grade classrooms, Timme wasn't disappointed. Students…

  2. 3D Printed Block Copolymer Nanostructures

    ERIC Educational Resources Information Center

    Scalfani, Vincent F.; Turner, C. Heath; Rupar, Paul A.; Jenkins, Alexander H.; Bara, Jason E.

    2015-01-01

    The emergence of 3D printing has dramatically advanced the availability of tangible molecular and extended solid models. Interestingly, there are few nanostructure models available both commercially and through other do-it-yourself approaches such as 3D printing. This is unfortunate given the importance of nanotechnology in science today. In this…

  3. Static & Dynamic Response of 3D Solids

    1996-07-15

    NIKE3D is a large deformations 3D finite element code used to obtain the resulting displacements and stresses from multi-body static and dynamic structural thermo-mechanics problems with sliding interfaces. Many nonlinear and temperature dependent constitutive models are available.

  4. Immersive 3D Geovisualization in Higher Education

    ERIC Educational Resources Information Center

    Philips, Andrea; Walz, Ariane; Bergner, Andreas; Graeff, Thomas; Heistermann, Maik; Kienzler, Sarah; Korup, Oliver; Lipp, Torsten; Schwanghart, Wolfgang; Zeilinger, Gerold

    2015-01-01

    In this study, we investigate how immersive 3D geovisualization can be used in higher education. Based on MacEachren and Kraak's geovisualization cube, we examine the usage of immersive 3D geovisualization and its usefulness in a research-based learning module on flood risk, called GEOSimulator. Results of a survey among participating students…

  5. Stereo 3-D Vision in Teaching Physics

    ERIC Educational Resources Information Center

    Zabunov, Svetoslav

    2012-01-01

    Stereo 3-D vision is a technology used to present images on a flat surface (screen, paper, etc.) and at the same time to create the notion of three-dimensional spatial perception of the viewed scene. A great number of physical processes are much better understood when viewed in stereo 3-D vision compared to standard flat 2-D presentation. The…

  6. Pathways for Learning from 3D Technology

    ERIC Educational Resources Information Center

    Carrier, L. Mark; Rab, Saira S.; Rosen, Larry D.; Vasquez, Ludivina; Cheever, Nancy A.

    2012-01-01

    The purpose of this study was to find out if 3D stereoscopic presentation of information in a movie format changes a viewer's experience of the movie content. Four possible pathways from 3D presentation to memory and learning were considered: a direct connection based on cognitive neuroscience research; a connection through "immersion" in that 3D…

  7. The contribution of soil biogenic NO emissions from a managed hyper-arid ecosystem to the regional NO2 emissions during growing season

    NASA Astrophysics Data System (ADS)

    Mamtimin, B.; Badawy, M.; Behrendt, T.; Meixner, F. X.; Wagner, T.

    2015-12-01

    A study was carried out to understand the contributions of soil biogenic NO emissions from managed (fertilized and irrigated) hyper-arid ecosystem in NW-China to the regional NO2 emissions during growing season. Soil biogenic NO emissions were quantified by laboratory incubation of corresponding soil samples. We have developed the Geoscience General Tool Package (GGTP) to obtain soil temperature, soil moisture and biogenic soil NO emission at oasis scale. Bottom-up anthropogenic NO2 emissions have been scaled down from annual to monthly values to compare mean monthly soil biogenic NO2 emissions. The top-down emission estimates have been derived from satellite observations compared then with the bottom-up emission estimates (anthropogenic and biogenic). The results show that the soil biogenic emissions of NO2 during the growing period are (at least) equal until twofold of the related anthropogenic sources. We found that the grape soils are the main summertime contributor to the biogenic NO emissions of study area, followed by cotton soils. The top-down and bottom-up emission estimates were shown to be useful methods to estimate the monthly/seasonal cycle of the total regional NO2 emissions. The resulting total NO2 emissions show a strong peak in winter and a secondary peak in summer, providing confidence in the method. These findings provide strong evidence that biogenic emissions from soils of managed drylands (irrigated and fertilized) in the growing period can be much more important contributors to the regional NO2 budget (hence to regional photochemistry) of dryland regions than thought before.

  8. Biocompatible 3D Matrix with Antimicrobial Properties.

    PubMed

    Ion, Alberto; Andronescu, Ecaterina; Rădulescu, Dragoș; Rădulescu, Marius; Iordache, Florin; Vasile, Bogdan Ștefan; Surdu, Adrian Vasile; Albu, Madalina Georgiana; Maniu, Horia; Chifiriuc, Mariana Carmen; Grumezescu, Alexandru Mihai; Holban, Alina Maria

    2016-01-01

    The aim of this study was to develop, characterize and assess the biological activity of a new regenerative 3D matrix with antimicrobial properties, based on collagen (COLL), hydroxyapatite (HAp), β-cyclodextrin (β-CD) and usnic acid (UA). The prepared 3D matrix was characterized by Scanning Electron Microscopy (SEM), Fourier Transform Infrared Microscopy (FT-IRM), Transmission Electron Microscopy (TEM), and X-ray Diffraction (XRD). In vitro qualitative and quantitative analyses performed on cultured diploid cells demonstrated that the 3D matrix is biocompatible, allowing the normal development and growth of MG-63 osteoblast-like cells and exhibited an antimicrobial effect, especially on the Staphylococcus aureus strain, explained by the particular higher inhibitory activity of usnic acid (UA) against Gram positive bacterial strains. Our data strongly recommend the obtained 3D matrix to be used as a successful alternative for the fabrication of three dimensional (3D) anti-infective regeneration matrix for bone tissue engineering. PMID:26805790

  9. Fabrication of 3D Silicon Sensors

    SciTech Connect

    Kok, A.; Hansen, T.E.; Hansen, T.A.; Lietaer, N.; Summanwar, A.; Kenney, C.; Hasi, J.; Da Via, C.; Parker, S.I.; /Hawaii U.

    2012-06-06

    Silicon sensors with a three-dimensional (3-D) architecture, in which the n and p electrodes penetrate through the entire substrate, have many advantages over planar silicon sensors including radiation hardness, fast time response, active edge and dual readout capabilities. The fabrication of 3D sensors is however rather complex. In recent years, there have been worldwide activities on 3D fabrication. SINTEF in collaboration with Stanford Nanofabrication Facility have successfully fabricated the original (single sided double column type) 3D detectors in two prototype runs and the third run is now on-going. This paper reports the status of this fabrication work and the resulted yield. The work of other groups such as the development of double sided 3D detectors is also briefly reported.

  10. BEAMS3D Neutral Beam Injection Model

    SciTech Connect

    Lazerson, Samuel

    2014-04-14

    With the advent of applied 3D fi elds in Tokamaks and modern high performance stellarators, a need has arisen to address non-axisymmetric effects on neutral beam heating and fueling. We report on the development of a fully 3D neutral beam injection (NBI) model, BEAMS3D, which addresses this need by coupling 3D equilibria to a guiding center code capable of modeling neutral and charged particle trajectories across the separatrix and into the plasma core. Ionization, neutralization, charge-exchange, viscous velocity reduction, and pitch angle scattering are modeled with the ADAS atomic physics database [1]. Benchmark calculations are presented to validate the collisionless particle orbits, neutral beam injection model, frictional drag, and pitch angle scattering effects. A calculation of neutral beam heating in the NCSX device is performed, highlighting the capability of the code to handle 3D magnetic fields.

  11. 3D Visualization Development of SIUE Campus

    NASA Astrophysics Data System (ADS)

    Nellutla, Shravya

    Geographic Information Systems (GIS) has progressed from the traditional map-making to the modern technology where the information can be created, edited, managed and analyzed. Like any other models, maps are simplified representations of real world. Hence visualization plays an essential role in the applications of GIS. The use of sophisticated visualization tools and methods, especially three dimensional (3D) modeling, has been rising considerably due to the advancement of technology. There are currently many off-the-shelf technologies available in the market to build 3D GIS models. One of the objectives of this research was to examine the available ArcGIS and its extensions for 3D modeling and visualization and use them to depict a real world scenario. Furthermore, with the advent of the web, a platform for accessing and sharing spatial information on the Internet, it is possible to generate interactive online maps. Integrating Internet capacity with GIS functionality redefines the process of sharing and processing the spatial information. Enabling a 3D map online requires off-the-shelf GIS software, 3D model builders, web server, web applications and client server technologies. Such environments are either complicated or expensive because of the amount of hardware and software involved. Therefore, the second objective of this research was to investigate and develop simpler yet cost-effective 3D modeling approach that uses available ArcGIS suite products and the free 3D computer graphics software for designing 3D world scenes. Both ArcGIS Explorer and ArcGIS Online will be used to demonstrate the way of sharing and distributing 3D geographic information on the Internet. A case study of the development of 3D campus for the Southern Illinois University Edwardsville is demonstrated.

  12. 3D Ultrafast Ultrasound Imaging In Vivo

    PubMed Central

    Provost, Jean; Papadacci, Clement; Arango, Juan Esteban; Imbault, Marion; Gennisson, Jean-Luc; Tanter, Mickael; Pernot, Mathieu

    2014-01-01

    Very high frame rate ultrasound imaging has recently allowed for the extension of the applications of echography to new fields of study such as the functional imaging of the brain, cardiac electrophysiology, and the quantitative real-time imaging of the intrinsic mechanical properties of tumors, to name a few, non-invasively and in real time. In this study, we present the first implementation of Ultrafast Ultrasound Imaging in three dimensions based on the use of either diverging or plane waves emanating from a sparse virtual array located behind the probe. It achieves high contrast and resolution while maintaining imaging rates of thousands of volumes per second. A customized portable ultrasound system was developed to sample 1024 independent channels and to drive a 32×32 matrix-array probe. Its capability to track in 3D transient phenomena occurring in the millisecond range within a single ultrafast acquisition was demonstrated for 3-D Shear-Wave Imaging, 3-D Ultrafast Doppler Imaging and finally 3D Ultrafast combined Tissue and Flow Doppler. The propagation of shear waves was tracked in a phantom and used to characterize its stiffness. 3-D Ultrafast Doppler was used to obtain 3-D maps of Pulsed Doppler, Color Doppler, and Power Doppler quantities in a single acquisition and revealed, for the first time, the complex 3-D flow patterns occurring in the ventricles of the human heart during an entire cardiac cycle, and the 3-D in vivo interaction of blood flow and wall motion during the pulse wave in the carotid at the bifurcation. This study demonstrates the potential of 3-D Ultrafast Ultrasound Imaging for the 3-D real-time mapping of stiffness, tissue motion, and flow in humans in vivo and promises new clinical applications of ultrasound with reduced intra- and inter-observer variability. PMID:25207828

  13. The psychology of the 3D experience

    NASA Astrophysics Data System (ADS)

    Janicke, Sophie H.; Ellis, Andrew

    2013-03-01

    With 3D televisions expected to reach 50% home saturation as early as 2016, understanding the psychological mechanisms underlying the user response to 3D technology is critical for content providers, educators and academics. Unfortunately, research examining the effects of 3D technology has not kept pace with the technology's rapid adoption, resulting in large-scale use of a technology about which very little is actually known. Recognizing this need for new research, we conducted a series of studies measuring and comparing many of the variables and processes underlying both 2D and 3D media experiences. In our first study, we found narratives within primetime dramas had the power to shift viewer attitudes in both 2D and 3D settings. However, we found no difference in persuasive power between 2D and 3D content. We contend this lack of effect was the result of poor conversion quality and the unique demands of 3D production. In our second study, we found 3D technology significantly increased enjoyment when viewing sports content, yet offered no added enjoyment when viewing a movie trailer. The enhanced enjoyment of the sports content was shown to be the result of heightened emotional arousal and attention in the 3D condition. We believe the lack of effect found for the movie trailer may be genre-related. In our final study, we found 3D technology significantly enhanced enjoyment of two video games from different genres. The added enjoyment was found to be the result of an increased sense of presence.

  14. Impact of second-generation biofuel agriculture on greenhouse gas emissions in the corn-growing regions of the US

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Land use for bioenergy crops is controversial because terrestrial resources that supply food, livestock feed, and ecosystem services already compete for geographical space in some regions of the world. Currently, in the US, both feed and bioenergy are produced from the food crop Zea mays L. (corn), ...