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Sample records for 3d simulations based

  1. Coniferous Canopy BRF Simulation Based on 3-D Realistic Scene

    NASA Technical Reports Server (NTRS)

    Wang, Xin-yun; Guo, Zhi-feng; Qin, Wen-han; Sun, Guo-qing

    2011-01-01

    It is difficulties for the computer simulation method to study radiation regime at large-scale. Simplified coniferous model was investigate d in the present study. It makes the computer simulation methods such as L-systems and radiosity-graphics combined method (RGM) more powerf ul in remote sensing of heterogeneous coniferous forests over a large -scale region. L-systems is applied to render 3-D coniferous forest scenarios: and RGM model was used to calculate BRF (bidirectional refle ctance factor) in visible and near-infrared regions. Results in this study show that in most cases both agreed well. Meanwhiie at a tree and forest level. the results are also good.

  2. Coniferous canopy BRF simulation based on 3-D realistic scene.

    PubMed

    Wang, Xin-Yun; Guo, Zhi-Feng; Qin, Wen-Han; Sun, Guo-Qing

    2011-09-01

    It is difficulties for the computer simulation method to study radiation regime at large-scale. Simplified coniferous model was investigated in the present study. It makes the computer simulation methods such as L-systems and radiosity-graphics combined method (RGM) more powerful in remote sensing of heterogeneous coniferous forests over a large-scale region. L-systems is applied to render 3-D coniferous forest scenarios, and RGM model was used to calculate BRF (bidirectional reflectance factor) in visible and near-infrared regions. Results in this study show that in most cases both agreed well. Meanwhile at a tree and forest level, the results are also good. PMID:22097856

  3. 3D Surgical Simulation

    PubMed Central

    Cevidanes, Lucia; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael

    2009-01-01

    This paper discusses the development of methods for computer-aided jaw surgery. Computer-aided jaw surgery allows us to incorporate the high level of precision necessary for transferring virtual plans into the operating room. We also present a complete computer-aided surgery (CAS) system developed in close collaboration with surgeons. Surgery planning and simulation include construction of 3D surface models from Cone-beam CT (CBCT), dynamic cephalometry, semi-automatic mirroring, interactive cutting of bone and bony segment repositioning. A virtual setup can be used to manufacture positioning splints for intra-operative guidance. The system provides further intra-operative assistance with the help of a computer display showing jaw positions and 3D positioning guides updated in real-time during the surgical procedure. The CAS system aids in dealing with complex cases with benefits for the patient, with surgical practice, and for orthodontic finishing. Advanced software tools for diagnosis and treatment planning allow preparation of detailed operative plans, osteotomy repositioning, bone reconstructions, surgical resident training and assessing the difficulties of the surgical procedures prior to the surgery. CAS has the potential to make the elaboration of the surgical plan a more flexible process, increase the level of detail and accuracy of the plan, yield higher operative precision and control, and enhance documentation of cases. Supported by NIDCR DE017727, and DE018962 PMID:20816308

  4. Web-Based 3D and Haptic Interactive Environments for e-Learning, Simulation, and Training

    NASA Astrophysics Data System (ADS)

    Hamza-Lup, Felix G.; Sopin, Ivan

    Knowledge creation occurs in the process of social interaction. As our service-based society is evolving into a knowledge-based society, there is an acute need for more effective collaboration and knowledge-sharing systems to be used by geographically scattered people. We present the use of 3D components and standards, such as Web3D, in combination with the haptic paradigm, for e-Learning and simulation.

  5. Probabilistic Seismic Hazard Maps for Seattle, Washington, Based on 3D Ground-Motion Simulations

    NASA Astrophysics Data System (ADS)

    Frankel, A. D.; Stephenson, W. J.; Carver, D. L.; Williams, R. A.; Odum, J. K.; Rhea, S.

    2007-12-01

    We have produced probabilistic seismic hazard maps for Seattle using over 500 3D finite-difference simulations of ground motions from earthquakes in the Seattle fault zone, Cascadia subduction zone, South Whidbey Island fault, and background shallow and deep source areas. The maps depict 1 Hz response spectral accelerations with 2, 5, and 10% probabilities of being exceeded in 50 years. The simulations were used to generate site and source dependent amplification factors that are applied to rock-site attenuation relations. The maps incorporate essentially the same fault sources and earthquake recurrence times as the 2002 national seismic hazard maps. The simulations included basin surface waves and basin-edge focusing effects from a 3D model of the Seattle basin. The 3D velocity model was validated by modeling several earthquakes in the region, including the 2001 M6.8 Nisqually earthquake, that were recorded by our Seattle Urban Seismic Network and the Pacific Northwest Seismic Network. The simulations duplicate our observation that earthquakes from the south and southwest typically produce larger amplifications in the Seattle basin than earthquakes from other azimuths, relative to rock sites outside the basin. Finite-fault simulations were run for earthquakes along the Seattle fault zone, with magnitudes ranging from 6.6 to 7.2, so that the effects of rupture directivity were included. Nonlinear amplification factors for soft-soil sites of fill and alluvium were also applied in the maps. For the Cascadia subduction zone, 3D simulations with point sources at different locations along the zone were used to determine amplification factors across Seattle expected for great subduction-zone earthquakes. These new urban seismic hazard maps are based on determinations of hazard for 7236 sites with a spacing of 280 m. The maps show that the highest hazard locations for this frequency band (around 1 Hz) are soft-soil sites (fill and alluvium) within the Seattle basin and

  6. Availability study of CFD-based Mask3D simulation method for next generation lithography technologies

    NASA Astrophysics Data System (ADS)

    Takahashi, M.; Kawabata, Y.; Washitani, T.; Tanaka, S.; Maeda, S.; Mimotogi, S.

    2014-03-01

    In progress of lithography technologies, the importance of Mask3D analysis has been emphasized because the influence of mask topography effects is not avoidable to be increased explosively. An electromagnetic filed simulation method, such as FDTD, RCWA and FEM, is applied to analyze those complicated phenomena. We have investigated Constrained Interpolation Profile (CIP) method, which is one of the Method of Characteristics (MoC), for Mask3D analysis in optical lithography. CIP method can reproduce the phase of propagating waves with less numerical error by using high order polynomial function. The restrictions of grid distance are relaxed with spatial grid. Therefore this method reduces the number of grid points in complex structure. In this paper, we study the feasibility of CIP scheme applying a non-uniform and spatial-interpolated grid to practical mask patterns. The number of grid points might be increased in complex layout and topological structure since these structures require a dense grid to remain the fidelity of each design. We propose a spatial interpolation method based on CIP method same as time-domain interpolation to reduce the number of grid points to be computed. The simulation results of two meshing methods with spatial interpolation are shown.

  7. Combination of intensity-based image registration with 3D simulation in radiation therapy

    NASA Astrophysics Data System (ADS)

    Li, Pan; Malsch, Urban; Bendl, Rolf

    2008-09-01

    Modern techniques of radiotherapy like intensity modulated radiation therapy (IMRT) make it possible to deliver high dose to tumors of different irregular shapes at the same time sparing surrounding healthy tissue. However, internal tumor motion makes precise calculation of the delivered dose distribution challenging. This makes analysis of tumor motion necessary. One way to describe target motion is using image registration. Many registration methods have already been developed previously. However, most of them belong either to geometric approaches or to intensity approaches. Methods which take account of anatomical information and results of intensity matching can greatly improve the results of image registration. Based on this idea, a combined method of image registration followed by 3D modeling and simulation was introduced in this project. Experiments were carried out for five patients 4DCT lung datasets. In the 3D simulation, models obtained from images of end-exhalation were deformed to the state of end-inhalation. Diaphragm motions were around -25 mm in the cranial-caudal (CC) direction. To verify the quality of our new method, displacements of landmarks were calculated and compared with measurements in the CT images. Improvement of accuracy after simulations has been shown compared to the results obtained only by intensity-based image registration. The average improvement was 0.97 mm. The average Euclidean error of the combined method was around 3.77 mm. Unrealistic motions such as curl-shaped deformations in the results of image registration were corrected. The combined method required less than 30 min. Our method provides information about the deformation of the target volume, which we need for dose optimization and target definition in our planning system.

  8. Augmented reality intravenous injection simulator based 3D medical imaging for veterinary medicine.

    PubMed

    Lee, S; Lee, J; Lee, A; Park, N; Lee, S; Song, S; Seo, A; Lee, H; Kim, J-I; Eom, K

    2013-05-01

    Augmented reality (AR) is a technology which enables users to see the real world, with virtual objects superimposed upon or composited with it. AR simulators have been developed and used in human medicine, but not in veterinary medicine. The aim of this study was to develop an AR intravenous (IV) injection simulator to train veterinary and pre-veterinary students to perform canine venipuncture. Computed tomographic (CT) images of a beagle dog were scanned using a 64-channel multidetector. The CT images were transformed into volumetric data sets using an image segmentation method and were converted into a stereolithography format for creating 3D models. An AR-based interface was developed for an AR simulator for IV injection. Veterinary and pre-veterinary student volunteers were randomly assigned to an AR-trained group or a control group trained using more traditional methods (n = 20/group; n = 8 pre-veterinary students and n = 12 veterinary students in each group) and their proficiency at IV injection technique in live dogs was assessed after training was completed. Students were also asked to complete a questionnaire which was administered after using the simulator. The group that was trained using an AR simulator were more proficient at IV injection technique using real dogs than the control group (P ≤ 0.01). The students agreed that they learned the IV injection technique through the AR simulator. Although the system used in this study needs to be modified before it can be adopted for veterinary educational use, AR simulation has been shown to be a very effective tool for training medical personnel. Using the technology reported here, veterinary AR simulators could be developed for future use in veterinary education. PMID:23103217

  9. 3-D Relativistic MHD Simulations

    NASA Astrophysics Data System (ADS)

    Nishikawa, K.-I.; Frank, J.; Koide, S.; Sakai, J.-I.; Christodoulou, D. M.; Sol, H.; Mutel, R. L.

    1998-12-01

    We present 3-D numerical simulations of moderately hot, supersonic jets propagating initially along or obliquely to the field lines of a denser magnetized background medium with Lorentz factors of W = 4.56 and evolving in a four-dimensional spacetime. The new results are understood as follows: Relativistic simulations have consistently shown that these jets are effectively heavy and so they do not suffer substantial momentum losses and are not decelerated as efficiently as their nonrelativistic counterparts. In addition, the ambient magnetic field, however strong, can be pushed aside with relative ease by the beam, provided that the degrees of freedom associated with all three spatial dimensions are followed self-consistently in the simulations. This effect is analogous to pushing Japanese ``noren'' or vertical Venetian blinds out of the way while the slats are allowed to bend in 3-D space rather than as a 2-D slab structure.

  10. Simulation of light transport in scintillators based on 3D characterization of crystal surfaces

    PubMed Central

    Cherry, Simon R.

    2013-01-01

    In the development of positron emission tomography (PET) detectors, understanding and optimizing scintillator light collection is critical for achieving high performance, particularly when the design incorporates depth-of-interaction (DOI) encoding or time-of-flight information. Monte-Carlo simulations play an important role in guiding research in detector designs and popular software such as GATE now include models of light transport in scintillators. Although current simulation toolkits are able to provide accurate models of perfectly polished surfaces, they do not successfully predict light output for other surface finishes, for example those often used in DOI-encoding detectors. The lack of accuracy of those models mainly originates from a simplified description of rough surfaces as an ensemble of micro-facets determined by the distribution of their normal, typically a Gaussian distribution. The user can specify the standard deviation of this distribution, but this parameter does not provide a full description of the surface reflectance properties. We propose a different approach based on 3D measurements of the surface using atomic force microscopy (AFM). Polished and rough (unpolished) crystals were scanned to compute the surface reflectance properties. The angular distributions of reflectance and reflected rays were computed and stored in look-up tables (LUTs). The LUTs account for the effect of incidence angle and were integrated in a light transport model. Crystals of different sizes were simulated with and without reflector. The simulated maximum light output and the light output as a function of DOI showed very good agreement with experimental characterization of the crystals, indicating that our approach provides an accurate model of polished and rough surfaces and could be used to predict light collection in scintillators. This model is based on a true 3D representation of the surface, makes no assumption about the surface and provides insight on the

  11. Population and Evolutionary Dynamics based on Predator-Prey Relationships in a 3D Physical Simulation.

    PubMed

    Ito, Takashi; Pilat, Marcin L; Suzuki, Reiji; Arita, Takaya

    2016-01-01

    Recent studies have reported that population dynamics and evolutionary dynamics, occurring at different time scales, can be affected by each other. Our purpose is to explore the interaction between population and evolutionary dynamics using an artificial life approach based on a 3D physically simulated environment in the context of predator-prey and morphology-behavior coevolution. The morphologies and behaviors of virtual prey creatures are evolved using a genetic algorithm based on the predation interactions between predators and prey. Both population sizes are also changed, depending on the fitness. We observe two types of cyclic behaviors, corresponding to short-term and long-term dynamics. The former can be interpreted as a simple population dynamics of Lotka-Volterra type. It is shown that the latter cycle is based on the interaction between the changes in the prey strategy against predators and the long-term change in both population sizes, resulting partly from a tradeoff between their defensive success and the cost of defense. PMID:26934093

  12. 3-D Relativistic MHD Simulations

    NASA Astrophysics Data System (ADS)

    Nishikaw, K.-I.; Frank, J.; Christodoulou, D. M.; Koide, S.; Sakai, J.-I.; Sol, H.; Mutel, R. L.

    1998-12-01

    We present 3-D numerical simulations of moderately hot, supersonic jets propagating initially along or obliquely to the field lines of a denser magnetized background medium with Lorentz factors of W=4.56 and evolving in a four-dimensional spacetime. The new results are understood as follows: Relativistic simulations have consistently shown that these jets are effectively heavy and so they do not suffer substantial momentum losses and are not decelerated as efficiently as their nonrelativistic counterparts. In addition, the ambient magnetic field, however strong, can be pushed aside with relative ease by the beam, provided that the degrees of freedom associated with all three spatial dimensions are followed self-consistently in the simulations. This effect is analogous to pushing Japanese ``noren'' or vertical Venetian blinds out of the way while the slats are allowed to bend in 3-D space rather than as a 2-D slab structure. We also simulate jets with the more realistic initial conditions for injecting jets for helical mangetic field, perturbed density, velocity, and internal energy, which are supposed to be caused in the process of jet generation. Three possible explanations for the observed variability are (i) tidal disruption of a star falling into the black hole, (ii) instabilities in the relativistic accretion disk, and (iii) jet-related PRocesses. New results will be reported at the meeting.

  13. Physics-Based 3-D Simulation for Earthquake Generation Cycles at Plate Interfaces in Subduction Zones

    NASA Astrophysics Data System (ADS)

    Hashimoto, Chihiro; Fukuyama, Eiichi; Matsu'ura, Mitsuhiro

    2014-08-01

    The generation of interplate earthquakes can be regarded as a process of tectonic stress accumulation and release, driven by relative plate motion. We completed a physics-based simulation system for earthquake generation cycles at plate interfaces in the Japan region, where the Pacific plate is descending beneath the North American and Philippine Sea plates, and the Philippine Sea plate is descending beneath the North American and Eurasian plates. The system is composed of a quasi-static tectonic loading model and a dynamic rupture propagation model, developed on a realistic 3-D plate interface model. The driving force of the system is relative plate motion. In the quasi-static tectonic loading model, mechanical interaction at plate interfaces is rationally represented by the increase of tangential displacement discontinuity (fault slip) across them on the basis of dislocation theory for an elastic surface layer overlying Maxwell-type viscoelastic half-space. In the dynamic rupture propagation model, stress changes due to fault slip motion on non-planar plate interfaces are evaluated with the boundary integral equation method. The progress of seismic (dynamic) or aseismic (quasi-static) fault slip on plate interfaces is governed by a slip- and time-dependent fault constitutive law. As an example, we numerically simulated earthquake generation cycles at the source region of the 1968 Tokachi-oki earthquake on the North American-Pacific plate interface. From the numerical simulation, we can see that postseismic stress relaxation in the asthenosphere accelerates stress accumulation in the source region. When the stress state of the source region is close to a critical level, dynamic rupture is rapidly accelerated and develops over the whole source region. When the stress state is much lower than the critical level, the rupture is not accelerated. This means that the stress state realized by interseismic tectonic loading essentially controls the subsequent dynamic

  14. Flexible simulation strategy for modeling 3D cultural objects based on multisource remotely sensed imagery

    NASA Astrophysics Data System (ADS)

    Guienko, Guennadi; Levin, Eugene

    2003-01-01

    New ideas and solutions never come alone. Although automated feature extraction is not sufficiently mature to move from the realm of scientific investigation into the category of production technology, a new goal has arisen: 3D simulation of real-world objects, extracted from images. This task, which evolved from feature extraction and is not an easy task itself, becomes even more complex, multi-leveled, and often uncertain and fuzzy when one exploits time-sequenced multi-source remotely sensed visual data. The basic components of the process are familiar image processing tasks: fusion of various types of imagery, automatic recognition of objects, removng those objects from the source images, and replacing them in the images with their realistic simulated "twin" object rendering. This paper discusses how to aggregate the most appropriate approach to each task into one technological process in order to develop a Manipulator for Visual Simulation of 3D objects (ManVIS) that is independent or imagery/format/media. The technology could be made general by combining a number of competent special purpose algorithms under appropriate contextual, geometric, spatial, and temporal constraints derived from a-priori knowledge. This could be achieved by planning the simulation in an Open Structure Simulation Strategy Manager (O3SM) a distinct component of ManVIS building the simulation strategy before beginning actual image manipulation.

  15. 3D Simulations for a Micron-Scale, Dielectric-Based Acceleration Experiment

    SciTech Connect

    Yoder, R. B.; Travish, G.; Xu Jin; Rosenzweig, J. B.

    2009-01-22

    An experimental program to demonstrate a dielectric, slab-symmetric accelerator structure has been underway for the past two years. These resonant devices are driven by a side-coupled 800-nm laser and can be configured to maintain the field profile necessary for synchronous acceleration and focusing of relativistic or nonrelativistic particles. We present 3D simulations of various versions of the structure geometry, including a metal-walled structure relevant to ongoing cold tests on resonant properties, and an all-dielectric structure to be constructed for a proof-of-principle acceleration experiment.

  16. Websim3d: A Web-based System for Generation, Storage and Dissemination of Earthquake Ground Motion Simulations.

    NASA Astrophysics Data System (ADS)

    Olsen, K. B.

    2003-12-01

    Synthetic time histories from large-scale 3D ground motion simulations generally constitute large 'data' sets which typically require 100's of Mbytes or Gbytes of storage capacity. For the same reason, getting access to a researchers simulation output, for example for an earthquake engineer to perform site analysis, or a seismologist to perform seismic hazard analysis, can be a tedious procedure. To circumvent this problem we have developed a web-based ``community model'' (websim3D) for the generation, storage, and dissemination of ground motion simulation results. Websim3D allows user-friendly and fast access to view and download such simulation results for an earthquake-prone area. The user selects an earthquake scenario from a map of the region, which brings up a map of the area where simulation data is available. Now, by clicking on an arbitrary site location, synthetic seismograms and/or soil parameters for the site can be displayed at fixed or variable scaling and/or downloaded. Websim3D relies on PHP scripts for the dynamic plots of synthetic seismograms and soil profiles. Although not limited to a specific area, we illustrate the community model for simulation results from the Los Angeles basin, Wellington (New Zealand), and Mexico.

  17. A 3D reconstruction solution to ultrasound Joule heat density tomography based on acousto-electric effect: a simulation study

    NASA Astrophysics Data System (ADS)

    Yang, R.; Song, A.; Li, X. D.; Lu, Y.; Yan, R.; Xu, B.; Li, X.

    2014-10-01

    A 3D reconstruction solution to ultrasound Joule heat density tomography based on acousto-electric effect by deconvolution is proposed for noninvasive imaging of biological tissue. Compared with ultrasound current source density imaging, ultrasound Joule heat density tomography doesn't require any priori knowledge of conductivity distribution and lead fields, so it can gain better imaging result, more adaptive to environment and with wider application scope. For a general 3D volume conductor with broadly distributed current density field, in the AE equation the ultrasound pressure can't simply be separated from the 3D integration, so it is not a common modulation and basebanding (heterodyning) method is no longer suitable to separate Joule heat density from the AE signals. In the proposed method the measurement signal is viewed as the output of Joule heat density convolving with ultrasound wave. As a result, the internal 3D Joule heat density can be reconstructed by means of Wiener deconvolution. A series of computer simulations set for breast cancer imaging applications, with consideration of ultrasound beam diameter, noise level, conductivity contrast, position dependency and size of simulated tumors, have been conducted to evaluate the feasibility and performance of the proposed reconstruction method. The computer simulation results demonstrate that high spatial resolution 3D ultrasound Joule heat density imaging is feasible using the proposed method, and it has potential applications to breast cancer detection and imaging of other organs.

  18. INCORPORATING DYNAMIC 3D SIMULATION INTO PRA

    SciTech Connect

    Steven R Prescott; Curtis Smith

    2011-07-01

    Through continued advancement in computational resources, development that was previously done by trial and error production is now performed through computer simulation. These virtual physical representations have the potential to provide accurate and valid modeling results and are being used in many different technical fields. Risk assessment now has the opportunity to use 3D simulation to improve analysis results and insights, especially for external event analysis. By using simulations, the modeler only has to determine the likelihood of an event without having to also predict the results of that event. The 3D simulation automatically determines not only the outcome of the event, but when those failures occur. How can we effectively incorporate 3D simulation into traditional PRA? Most PRA plant modeling is made up of components with different failure modes, probabilities, and rates. Typically, these components are grouped into various systems and then are modeled together (in different combinations) as a “system” with logic structures to form fault trees. Applicable fault trees are combined through scenarios, typically represented by event tree models. Though this method gives us failure results for a given model, it has limitations when it comes to time-based dependencies or dependencies that are coupled to physical processes which may themselves be space- or time-dependent. Since, failures from a 3D simulation are naturally time related, they should be used in that manner. In our simulation approach, traditional static models are converted into an equivalent state diagram representation with start states, probabilistic driven movements between states and terminal states. As the state model is run repeatedly, it converges to the same results as the PRA model in cases where time-related factors are not important. In cases where timing considerations are important (e.g., when events are dependent upon each other), then the simulation approach will typically

  19. A web-based platform for simulating seismic wave propagation in 3D shallow Earth models with DEM surface topography

    NASA Astrophysics Data System (ADS)

    Luo, Cong; Friederich, Wolfgang

    2016-04-01

    Realistic shallow seismic wave propagation simulation is an important tool for studying induced seismicity (e.g., during geothermal energy development). However over a long time, there is a significant problem which constrains computational seismologists from performing a successful simulation conveniently: pre-processing. Conventional pre-processing has often turned out to be inefficient and unrobust because of the miscellaneous operations, considerable complexity and insufficiency of available tools. An integrated web-based platform for shallow seismic wave propagation simulation has been built. It is aiming at providing a user-friendly pre-processing solution, and cloud-based simulation abilities. The main features of the platform for the user include: revised digital elevation model (DEM) retrieving and processing mechanism; generation of multi-layered 3D shallow Earth model geometry (the computational domain) with user specified surface topography based on the DEM; visualization of the geometry before the simulation; a pipeline from geometry to fully customizable hexahedral element mesh generation; customization and running the simulation on our HPC; post-processing and retrieval of the results over cloud. Regarding the computational aspect, currently the widely accepted specfem3D is chosen as the computational package; packages using different types of elements can be integrated as well in the future. According to our trial simulation experiments, this web-based platform has produced accurate waveforms while significantly simplifying and enhancing the pre-processing and improving the simulation success rate.

  20. An ALE Based FE Formulation for the 3D Numerical Simulation of Fineblanking Processes

    NASA Astrophysics Data System (ADS)

    Manopulo, Niko; Tong, Longchang; Hora, Pavel

    2010-06-01

    Fineblanking is a manufacturing process which allows the mass production of blanked products with superior surface quality. The 3D numerical simulation of this particularly precise process is however challenging. This is because quality-critical tool features such as the die clearance and the shape of the cutting edges have dimensions up to two orders of magnitude smaller than the average part dimensions. If conventional Updated Lagrange codes are used, a very high FE mesh resolution becomes a must in order to accurately represent the surface evolution along the edge, which in turn makes the computation unfeasible. The methodology presented in this paper makes use of the Arbitrary Lagrangian Eulerian FE Formulation in order to keep control over the mesh region in contact with the tools. This way an optimal FE mesh can be guaranteed throughout the computation. This not only reduces the computational cost considerably, but also avoids mesh distortion along the cutting edge, allowing an accurate representation of the tool features. This approach will be used in conjunction to the stress limit criterion delineated in order to predict material failure in fine blanked products. Numerical results will be validated against the experiments carried out with a specially designed fineblanking tool in use at our institute.

  1. A NURBS-based generalized finite element scheme for 3D simulation of heterogeneous materials

    NASA Astrophysics Data System (ADS)

    Safdari, Masoud; Najafi, Ahmad R.; Sottos, Nancy R.; Geubelle, Philippe H.

    2016-08-01

    A 3D NURBS-based interface-enriched generalized finite element method (NIGFEM) is introduced to solve problems with complex discontinuous gradient fields observed in the analysis of heterogeneous materials. The method utilizes simple structured meshes of hexahedral elements that do not necessarily conform to the material interfaces in heterogeneous materials. By avoiding the creation of conforming meshes used in conventional FEM, the NIGFEM leads to significant simplification of the mesh generation process. To achieve an accurate solution in elements that are crossed by material interfaces, the NIGFEM utilizes Non-Uniform Rational B-Splines (NURBS) to enrich the solution field locally. The accuracy and convergence of the NIGFEM are tested by solving a benchmark problem. We observe that the NIGFEM preserves an optimal rate of convergence, and provides additional advantages including the accurate capture of the solution fields in the vicinity of material interfaces and the built-in capability for hierarchical mesh refinement. Finally, the use of the NIGFEM in the computational analysis of heterogeneous materials is discussed.

  2. The numerical simulation for a 3D two-phase anisotropic medium based on BISQ model

    NASA Astrophysics Data System (ADS)

    Wang, Zhejiang; He, Qiaodeng; Wang, Deli

    2008-03-01

    Biot-flow and squirt-flow are the two most important fluid flow mechanisms in porous media containing fluids. Based on the BISQ (Biot-Squirt) model where the two mechanisms are treated simultaneously, the elastic wave-field simulation in the porous medium is limited to two-dimensions and two-components (2D2C) or two-dimensions and three-components (2D3C). There is no previous report on wave simulation in three-dimensions and three-components. Only through three dimensional numerical simulations can we have an overall understanding of wave field coupling relations and the spatial distribution characteristics between the solid and fluid phases in the dual-phase anisotropic medium. In this paper, based on the BISQ equation, we present elastic wave propagation in a three dimensional dual-phase anisotropic medium simulated by the staggered-grid high-order finite-difference method. We analyze the resulting wave fields and show that the results are an improvement.

  3. Wavelet-based adaptive numerical simulation of unsteady 3D flow around a bluff body

    NASA Astrophysics Data System (ADS)

    de Stefano, Giuliano; Vasilyev, Oleg

    2012-11-01

    The unsteady three-dimensional flow past a two-dimensional bluff body is numerically simulated using a wavelet-based method. The body is modeled by exploiting the Brinkman volume-penalization method, which results in modifying the governing equations with the addition of an appropriate forcing term inside the spatial region occupied by the obstacle. The volume-penalized incompressible Navier-Stokes equations are numerically solved by means of the adaptive wavelet collocation method, where the non-uniform spatial grid is dynamically adapted to the flow evolution. The combined approach is successfully applied to the simulation of vortex shedding flow behind a stationary prism with square cross-section. The computation is conducted at transitional Reynolds numbers, where fundamental unstable three-dimensional vortical structures exist, by well-predicting the unsteady forces arising from fluid-structure interaction.

  4. DRACO development for 3D simulations

    NASA Astrophysics Data System (ADS)

    Fatenejad, Milad; Moses, Gregory

    2006-10-01

    The DRACO (r-z) lagrangian radiation-hydrodynamics laser fusion simulation code is being extended to model 3D hydrodynamics in (x-y-z) coordinates with hexahedral cells on a structured grid. The equation of motion is solved with a lagrangian update with optional rezoning. The fluid equations are solved using an explicit scheme based on (Schulz, 1964) while the SALE-3D algorithm (Amsden, 1981) is used as a template for computing cell volumes and other quantities. A second order rezoner has been added which uses linear interpolation of the underlying continuous functions to preserve accuracy (Van Leer, 1976). Artificial restoring force terms and smoothing algorithms are used to avoid grid distortion in high aspect ratio cells. These include alternate node couplers along with a rotational restoring force based on the Tensor Code (Maenchen, 1964). Electron and ion thermal conduction is modeled using an extension of Kershaw's method (Kershaw, 1981) to 3D geometry. Test problem simulations will be presented to demonstrate the applicability of this new version of DRACO to the study of fluid instabilities in three dimensions.

  5. Edge-based finite element approach to the simulation of geoelectromagnetic induction in a 3-D sphere

    NASA Astrophysics Data System (ADS)

    Yoshimura, Ryokei; Oshiman, Naoto

    2002-02-01

    We present a new simulator based on an edge-based finite element method (FEM) for computing the global-scale electromagnetic (EM) induction responses in a 3-D conducting sphere excited by an external source current for a variety of frequencies. The formulation is in terms of the magnetic vector potential. The edge-element approach assigns the degrees of freedom to the edges rather than to the nodes of the element. This edge-element strictly satisfies the discontinuity of the normal boundary conditions without considering the enforced normal boundary conditions that are usually practiced in a node-based FEM. To verify our simulation code, we compare our results with those of other solvers for two test computations, corresponding to azimuthally symmetric and asymmetric models. The results are in good agreement with one another.

  6. Validation of fluence-based 3D IMRT dose reconstruction on a heterogeneous anthropomorphic phantom using Monte Carlo simulation.

    PubMed

    Nakaguchi, Yuji; Ono, Takeshi; Maruyama, Masato; Nagasue, Nozomu; Shimohigashi, Yoshinobu; Kai, Yudai

    2015-01-01

    In this study, we evaluated the performance of a three-dimensional (3D) dose verification system, COMPASS version 3, which has a dedicated beam models and dose calculation engine. It was possible to reconstruct the 3D dose distributions in patient anatomy based on the measured fluence using the MatriXX 2D array. The COMPASS system was compared with Monte Carlo simulation (MC), glass rod dosimeter (GRD), and 3DVH, using an anthropomorphic phantom for intensity-modulated radiation therapy (IMRT) dose verification in clinical neck cases. The GRD measurements agreed with the MC within 5% at most measurement points. In addition, most points for COMPASS and 3DVH also agreed with the MC within 5%. The COMPASS system showed better results than 3DVH for dose profiles due to individual adjustments, such as beam modeling for each linac. Regarding the dose-volume histograms, there were no large differences between MC, analytical anisotropic algorithm (AAA) in Eclipse treatment planning system (TPS), 3DVH, and the COMPASS system. However, AAA underestimated the dose to the clinical target volume and Rt-Parotid slightly. This is because AAA has some problems with dose calculation accuracy. Our results indicated that the COMPASS system offers highly accurate 3D dose calculation for clinical IMRT quality assurance. Also, the COMPASS system will be useful as a commissioning tool in routine clinical practice for TPS. PMID:25679177

  7. Coupled simulation of chemical lasers based on intracavity partially coherent light model and 3D CFD model.

    PubMed

    Wu, Kenan; Huai, Ying; Jia, Shuqin; Jin, Yuqi

    2011-12-19

    Coupled simulation based on intracavity partially coherent light model and 3D CFD model is firstly achieved in this paper. The dynamic equation of partially coherent intracavity field is derived based on partially coherent light theory. A numerical scheme for the coupled simulation as well as a method for computing the intracavity partially coherent field is given. The presented model explains the formation of the sugar scooping phenomenon, and enables studies on the dependence of the spatial mode spectrum on physical parameters of laser cavity and gain medium. Computational results show that as the flow rate of iodine increases, higher order mode components dominate in the partially coherent field. Results obtained by the proposed model are in good agreement with experimental results. PMID:22274214

  8. 3D Simulation: Microgravity Environments and Applications

    NASA Technical Reports Server (NTRS)

    Hunter, Steve L.; Dischinger, Charles; Estes, Samantha; Parker, Nelson C. (Technical Monitor)

    2001-01-01

    Most, if not all, 3-D and Virtual Reality (VR) software programs are designed for one-G gravity applications. Space environments simulations require gravity effects of one one-thousandth to one one-million of that of the Earth's surface (10(exp -3) - 10(exp -6) G), thus one must be able to generate simulations that replicate those microgravity effects upon simulated astronauts. Unfortunately, the software programs utilized by the National Aeronautical and Space Administration does not have the ability to readily neutralize the one-G gravity effect. This pre-programmed situation causes the engineer or analysis difficulty during micro-gravity simulations. Therefore, microgravity simulations require special techniques or additional code in order to apply the power of 3D graphic simulation to space related applications. This paper discusses the problem and possible solutions to allow microgravity 3-D/VR simulations to be completed successfully without program code modifications.

  9. A 3D numerical simulation of stress distribution and fracture process in a zirconia-based FPD framework.

    PubMed

    Kou, Wen; Li, Decong; Qiao, Jiyan; Chen, Li; Ding, Yansheng; Sjögren, Göran

    2011-02-01

    In this study, a numerical approach to the fracture behavior in a three-unit zirconia-based fixed partial denture (FPD) framework was made under mechanical loading using a newly developed three-dimensional (3D) numerical modeling code. All the materials studied were treated heterogeneously and Weibull distribution law was applied to describe the heterogeneity. The Mohr-Coulomb failure criterion with tensile strength cut-off was utilized to judge whether the material was in an elastic or failed state. For validation, the fracture pattern obtained from the numerical modeling was compared with a laboratory test; they largely correlated with each other. Similar fracture initiation sites were detected both in the numerical simulation and in an earlier fractographic analysis. The numerical simulation applied in this study clearly described the stress distribution and fracture process of zirconia-based FPD frameworks, information that could not be gained from the laboratory tests alone. Thus, the newly developed 3D numerical modeling code seems to be an efficient tool for prediction of the fracture process in ceramic FPD frameworks. PMID:21210519

  10. Gypsies in the palace: Experimentalist's view on the use of 3-D physics-based simulation of hillslope hydrological response

    USGS Publications Warehouse

    James, A.L.; McDonnell, Jeffery J.; Tromp-Van Meerveld, I.; Peters, N.E.

    2010-01-01

    As a fundamental unit of the landscape, hillslopes are studied for their retention and release of water and nutrients across a wide range of ecosystems. The understanding of these near-surface processes is relevant to issues of runoff generation, groundwater-surface water interactions, catchment export of nutrients, dissolved organic carbon, contaminants (e.g. mercury) and ultimately surface water health. We develop a 3-D physics-based representation of the Panola Mountain Research Watershed experimental hillslope using the TOUGH2 sub-surface flow and transport simulator. A recent investigation of sub-surface flow within this experimental hillslope has generated important knowledge of threshold rainfall-runoff response and its relation to patterns of transient water table development. This work has identified components of the 3-D sub-surface, such as bedrock topography, that contribute to changing connectivity in saturated zones and the generation of sub-surface stormflow. Here, we test the ability of a 3-D hillslope model (both calibrated and uncalibrated) to simulate forested hillslope rainfall-runoff response and internal transient sub-surface stormflow dynamics. We also provide a transparent illustration of physics-based model development, issues of parameterization, examples of model rejection and usefulness of data types (e.g. runoff, mean soil moisture and transient water table depth) to the model enterprise. Our simulations show the inability of an uncalibrated model based on laboratory and field characterization of soil properties and topography to successfully simulate the integrated hydrological response or the distributed water table within the soil profile. Although not an uncommon result, the failure of the field-based characterized model to represent system behaviour is an important challenge that continues to vex scientists at many scales. We focus our attention particularly on examining the influence of bedrock permeability, soil anisotropy and

  11. Cholla: 3D GPU-based hydrodynamics code for astrophysical simulation

    NASA Astrophysics Data System (ADS)

    Schneider, Evan E.; Robertson, Brant E.

    2016-07-01

    Cholla (Computational Hydrodynamics On ParaLLel Architectures) models the Euler equations on a static mesh and evolves the fluid properties of thousands of cells simultaneously using GPUs. It can update over ten million cells per GPU-second while using an exact Riemann solver and PPM reconstruction, allowing computation of astrophysical simulations with physically interesting grid resolutions (>256^3) on a single device; calculations can be extended onto multiple devices with nearly ideal scaling beyond 64 GPUs.

  12. Visualization of the Links Between Rainfall, Soil Water, Groundwater and Subsurface Stormflow: A Physics-Based 3-D Simulation Approach

    NASA Astrophysics Data System (ADS)

    James, A. L.; McDonnell, J. J.; Tromp-van Meerveld, H.

    2006-12-01

    Recent experimental work at the Panola Mountain Experimental Watershed trenched hillslope (Atlanta, GA) has shown that formation of transient groundwater in bedrock depressions during storm events is a precondition for the generation of subsurface stormflow. While there are clear threshold relations between subsurface stormflow and storm total precipitation, resolving the linkages between rainfall input, soil water recharge, transient groundwater formation and resulting subsurface stormflow has been difficult. Part of the problem is that we lack observational capabilities to interrogate the distributed internal slope response to storm rainfall. Even more problematic is our inability to quantify key boundary conditions like the permeability contrast at the soil-bedrock interface and its spatial variability. This paper uses a 3-D physically-based distributed model of the Panola hillslope (the TOUGH2 simulator) to model and visualize the linkages between storm rainfall, soil water recharge, transient groundwater development and resulting subsurface stormflow. We explore the effect of the bedrock permeability on the development of transient saturation within the hillslope in response to observed storm events. Preliminary results indicate that an increase in the estimated characteristic bedrock permeability at the Panola hillslope can deteriorate and even eliminate the connected patterns of transient saturation developed during a storm event that result in subsurface storm runoff. Our 3-D visualizations and virtual experiments with different bedrock permeability values provide insight into how bedrock permeability, antecedent soil moisture and storm conditions conspire to create the patterns of transient groundwater and resulting subsurface stormflow.

  13. GPR simulation based on complex frequency shifted recursive integration PML boundary of 3D high order FDTD

    NASA Astrophysics Data System (ADS)

    Li, Jing; Zeng, Zhaofa; Huang, Ling; Liu, Fengshan

    2012-12-01

    When applying the finite difference time domain (FDTD) method in Ground Penetrating Radar (GPR) simulation, the absorbing boundary conditions (ABC) are used to mitigate undesired reflection that can arise at the model's truncation boundaries. The classical PML boundary can make spurious reflection for the waves, such as reaching to the PML interface with near-grazing angles, low frequency waves or evanescent waves. The non-split complex frequency shifted PML which base on recursive integration (CFS-RIPML) has a good absorption effect for these interference waves. Meanwhile, the recursive integration, which does not need split field component, can overcome the shortcoming of CFS technique that needs more intermediate variable and large memory. In addition, the high-order FDTD can improve calculation accuracy and reduce the error caused by numerical dispersion effectively. In this paper, we derive the 3D high-order FDTD method with CFS-RIPML boundary and apply it in GPR simulation. The results show that the CFS-RIPML has significantly better absorption effect and lower reflections error than UPML and PML boundary. Compared with the two-order, the high-order FDTD can improve calculation accuracy effectively with the same grid size. Combination with CFS-RIPML boundary and high-order FDTD can improve the reliability and calculation accuracy of GPR and other geophysics numerical simulation.

  14. 3D MHD Simulations of Tokamak Disruptions

    NASA Astrophysics Data System (ADS)

    Woodruff, Simon; Stuber, James

    2014-10-01

    Two disruption scenarios are modeled numerically by use of the CORSICA 2D equilibrium and NIMROD 3D MHD codes. The work follows the simulations of pressure-driven modes in DIII-D and VDEs in ITER. The aim of the work is to provide starting points for simulation of tokamak disruption mitigation techniques currently in the CDR phase for ITER. Pressure-driven instability growth rates previously observed in simulations of DIIID are verified; Halo and Hiro currents produced during vertical displacements are observed in simulations of ITER with implementation of resistive walls in NIMROD. We discuss plans to exercise new code capabilities and validation.

  15. Crowdsourcing Based 3d Modeling

    NASA Astrophysics Data System (ADS)

    Somogyi, A.; Barsi, A.; Molnar, B.; Lovas, T.

    2016-06-01

    Web-based photo albums that support organizing and viewing the users' images are widely used. These services provide a convenient solution for storing, editing and sharing images. In many cases, the users attach geotags to the images in order to enable using them e.g. in location based applications on social networks. Our paper discusses a procedure that collects open access images from a site frequently visited by tourists. Geotagged pictures showing the image of a sight or tourist attraction are selected and processed in photogrammetric processing software that produces the 3D model of the captured object. For the particular investigation we selected three attractions in Budapest. To assess the geometrical accuracy, we used laser scanner and DSLR as well as smart phone photography to derive reference values to enable verifying the spatial model obtained from the web-album images. The investigation shows how detailed and accurate models could be derived applying photogrammetric processing software, simply by using images of the community, without visiting the site.

  16. Crashworthiness simulations with DYNA3D

    SciTech Connect

    Schauer, D.A.; Hoover, C.G.; Kay, G.J.; Lee, A.S.; De Groot, A.J.

    1996-04-01

    Current progress in parallel algorithm research and applications in vehicle crash simulation is described for the explicit, finite element algorithms in DYNA3D. Problem partitioning methods and parallel algorithms for contact at material interfaces are the two challenging algorithm research problems that are addressed. Two prototype parallel contact algorithms have been developed for treating the cases of local and arbitrary contact. Demonstration problems for local contact are crashworthiness simulations with 222 locally defined contact surfaces and a vehicle/barrier collision modeled with arbitrary contact. A simulation of crash tests conducted for a vehicle impacting a U-channel small sign post embedded in soil has been run on both the serial and parallel versions of DYNA3D. A significant reduction in computational time has been observed when running these problems on the parallel version. However, to achieve maximum efficiency, complex problems must be appropriately partitioned, especially when contact dominates the computation.

  17. The differential algebra based multiple level fast multipole algorithm for 3D space charge field calculation and photoemission simulation

    SciTech Connect

    None, None

    2015-09-28

    Coulomb interaction between charged particles inside a bunch is one of the most importance collective effects in beam dynamics, becoming even more significant as the energy of the particle beam is lowered to accommodate analytical and low-Z material imaging purposes such as in the time resolved Ultrafast Electron Microscope (UEM) development currently underway at Michigan State University. In addition, space charge effects are the key limiting factor in the development of ultrafast atomic resolution electron imaging and diffraction technologies and are also correlated with an irreversible growth in rms beam emittance due to fluctuating components of the nonlinear electron dynamics. In the short pulse regime used in the UEM, space charge effects also lead to virtual cathode formation in which the negative charge of the electrons emitted at earlier times, combined with the attractive surface field, hinders further emission of particles and causes a degradation of the pulse properties. Space charge and virtual cathode effects and their remediation are core issues for the development of the next generation of high-brightness UEMs. Since the analytical models are only applicable for special cases, numerical simulations, in addition to experiments, are usually necessary to accurately understand the space charge effect. In this paper we will introduce a grid-free differential algebra based multiple level fast multipole algorithm, which calculates the 3D space charge field for n charged particles in arbitrary distribution with an efficiency of O(n), and the implementation of the algorithm to a simulation code for space charge dominated photoemission processes.

  18. The differential algebra based multiple level fast multipole algorithm for 3D space charge field calculation and photoemission simulation

    DOE PAGESBeta

    None, None

    2015-09-28

    Coulomb interaction between charged particles inside a bunch is one of the most importance collective effects in beam dynamics, becoming even more significant as the energy of the particle beam is lowered to accommodate analytical and low-Z material imaging purposes such as in the time resolved Ultrafast Electron Microscope (UEM) development currently underway at Michigan State University. In addition, space charge effects are the key limiting factor in the development of ultrafast atomic resolution electron imaging and diffraction technologies and are also correlated with an irreversible growth in rms beam emittance due to fluctuating components of the nonlinear electron dynamics.more » In the short pulse regime used in the UEM, space charge effects also lead to virtual cathode formation in which the negative charge of the electrons emitted at earlier times, combined with the attractive surface field, hinders further emission of particles and causes a degradation of the pulse properties. Space charge and virtual cathode effects and their remediation are core issues for the development of the next generation of high-brightness UEMs. Since the analytical models are only applicable for special cases, numerical simulations, in addition to experiments, are usually necessary to accurately understand the space charge effect. In this paper we will introduce a grid-free differential algebra based multiple level fast multipole algorithm, which calculates the 3D space charge field for n charged particles in arbitrary distribution with an efficiency of O(n), and the implementation of the algorithm to a simulation code for space charge dominated photoemission processes.« less

  19. Mechanical Simulation of the Localized Deformation in the Aluminum Foams: A Three-dimensional (3D) Structure Based Study

    NASA Astrophysics Data System (ADS)

    Kai, Zhu; Enyu, Guo; Wenqian, Zhou; Sansan, Shuai; Tao, Jing; Hongliang, Hou; Yanjin, Xu

    2015-06-01

    Metal-foam materials have been used increasingly in industry for their low-density, high-toughness and high impact resistance properties. Understanding the macro-scale mechanical properties of these materials is essential to evaluate their actual performance and thus to optimize the structures and properties accordingly. Synchrotron radiation X-ray microtomographytechnique is a promising method to study 3D structures at small length scales, which provides high spatial resolution and allows the researchers to observe the change of structures/features in situ without destroying the original objects. In this work, the real 3D structure of closed-cell aluminum foam was obtained by using synchrotron radiation X-ray microtomography. The reconstructed 3D model of the foam was further utilized as input for the subsequent mechanical study to investigate the localized deformation behaviors and evolution process of the foam under longitudinal quasi-static uniaxial compressive loading. By analyzing the simulated results, it is demonstrated that the deformation bands always initiate and propagate along the cell walls which are finally folded upon loading. And the large spherical cells are more susceptible to yielding, as well as to the stress concentration than the cells with other shapes. This finding is consistent with the experimental results.

  20. Analytical augmentation of 3D simulation environments

    NASA Astrophysics Data System (ADS)

    Loughran, Julia J.; Stahl, Marchelle M.

    1998-05-01

    This paper describes an approach for augmenting three- dimensional (3D) virtual environments (VEs) with analytic information and multimedia annotations to enhance training and education applications. Analytic or symbolic information in VEs is presented as bar charts, text, graphical overlays, or with the use of color. Analytic results can be computed and displayed in the VE at run-time or, more likely, while replaying a simulation. These annotations would typically include computations of pre-defined Measures of Performance (MOPs) or Measures of Effectiveness (MOEs) associated with the training or educational goals of the simulation. Multimedia annotations are inserted into the VE by the user and may include: a drawing or whiteboarding capability, enabling participants to insert written text and/or graphics into the two-dimensional (2D) or 3D world; audio comments, and/or video recordings. These annotations can clarify a point, capture teacher feedback, or elaborate on the student's perspective or understanding of the experience. The annotations are captured in the VE either synchronously or asynchronously from the users (students and instructors), during simulation execution or afterward during a replay. When replaying or reviewing the simulation, the embedded annotations can be reviewed by a single user or by multiple users through the use of collaboration technologies. By augmenting 3D virtual environments with analytic and multimedia annotations, the education and training experience may be enhanced. The annotations can offer more effective feedback, enhance understanding, and increase participation. They may also support distance learning by promoting student/teacher interaction without co-location.

  1. An Evaluative Review of Simulated Dynamic Smart 3d Objects

    NASA Astrophysics Data System (ADS)

    Romeijn, H.; Sheth, F.; Pettit, C. J.

    2012-07-01

    Three-dimensional (3D) modelling of plants can be an asset for creating agricultural based visualisation products. The continuum of 3D plants models ranges from static to dynamic objects, also known as smart 3D objects. There is an increasing requirement for smarter simulated 3D objects that are attributed mathematically and/or from biological inputs. A systematic approach to plant simulation offers significant advantages to applications in agricultural research, particularly in simulating plant behaviour and the influences of external environmental factors. This approach of 3D plant object visualisation is primarily evident from the visualisation of plants using photographed billboarded images, to more advanced procedural models that come closer to simulating realistic virtual plants. However, few programs model physical reactions of plants to external factors and even fewer are able to grow plants based on mathematical and/or biological parameters. In this paper, we undertake an evaluation of plant-based object simulation programs currently available, with a focus upon the components and techniques involved in producing these objects. Through an analytical review process we consider the strengths and weaknesses of several program packages, the features and use of these programs and the possible opportunities in deploying these for creating smart 3D plant-based objects to support agricultural research and natural resource management. In creating smart 3D objects the model needs to be informed by both plant physiology and phenology. Expert knowledge will frame the parameters and procedures that will attribute the object and allow the simulation of dynamic virtual plants. Ultimately, biologically smart 3D virtual plants that react to changes within an environment could be an effective medium to visually represent landscapes and communicate land management scenarios and practices to planners and decision-makers.

  2. Numerical simulation of 3D breaking waves

    NASA Astrophysics Data System (ADS)

    Fraunie, Philippe; Golay, Frederic

    2015-04-01

    Numerical methods dealing with two phase flows basically can be classified in two ways : the "interface tracking" methods when the two phases are resolved separately including boundary conditions fixed at the interface and the "interface capturing" methods when a single flow is considered with variable density. Physical and numerical properties of the two approaches are discussed, based on some numerical experiments performed concerning 3D breaking waves. Acknowledgements : This research was supported by the Modtercom program of Region PACA.

  3. Design of 3D simulation engine for oilfield safety training

    NASA Astrophysics Data System (ADS)

    Li, Hua-Ming; Kang, Bao-Sheng

    2015-03-01

    Aiming at the demand for rapid custom development of 3D simulation system for oilfield safety training, this paper designs and implements a 3D simulation engine based on script-driven method, multi-layer structure, pre-defined entity objects and high-level tools such as scene editor, script editor, program loader. A scripting language been defined to control the system's progress, events and operating results. Training teacher can use this engine to edit 3D virtual scenes, set the properties of entity objects, define the logic script of task, and produce a 3D simulation training system without any skills of programming. Through expanding entity class, this engine can be quickly applied to other virtual training areas.

  4. 3-D simulations of multiple beam klystrons

    SciTech Connect

    Smithe, David N.; Bettenhausen, Mike; Ludeking, Larry; Caryotakis, G.; Sprehn, Daryl; Scheitrum, Glenn

    1999-05-07

    The MAGIC3D simulation code is being used to assess the multi-dimensional physics issues relating to the design and operation of multiple beam klystrons. Investigations, to date, include a detailed study of the mode structure of the cavities in the 19-beam hexagonally packed geometry and a study of the velocity spread caused by the cavity mode's field profile. Some attempts to minimize this effect are investigated. Additional simulations have provided quantification of the beam loading Q in a dual input cavity, and optimization of a dual output cavity. An important goal of the simulations is an accurate picture of beam transport along the length of the MBK. We have quantified the magnitude and spatial variation of the beam-line space charge interactions within a cavity gap. Present simulations have demonstrated the transport of the beam through three cavities (the present limits of our simulation size) without difficulty; additional length simulations are expected. We have also examined unbalanced beam-line scenarios, e.g., one beam-line suppressed, and find little disturbance to the transport in individual cavity tests, with results for multiple cavity transport expected.

  5. Fast Simulation of 3-D Surface Flanging and Prediction of the Flanging Lines Based On One-Step Inverse Forming Algorithm

    SciTech Connect

    Bao Yidong; Hu Sibo; Lang Zhikui; Hu Ping

    2005-08-05

    A fast simulation scheme for 3D curved binder flanging and blank shape prediction of sheet metal based on one-step inverse finite element method is proposed, in which the total plasticity theory and proportional loading assumption are used. The scheme can be actually used to simulate 3D flanging with complex curve binder shape, and suitable for simulating any type of flanging model by numerically determining the flanging height and flanging lines. Compared with other methods such as analytic algorithm and blank sheet-cut return method, the prominent advantage of the present scheme is that it can directly predict the location of the 3D flanging lines when simulating the flanging process. Therefore, the prediction time of flanging lines will be obviously decreased. Two typical 3D curve binder flanging including stretch and shrink characters are simulated in the same time by using the present scheme and incremental FE non-inverse algorithm based on incremental plasticity theory, which show the validity and high efficiency of the present scheme.

  6. Physics-based Simulation of Human Posture Using 3D Whole Body Scanning Technology for Astronaut Space Suit Evaluation

    NASA Technical Reports Server (NTRS)

    Kim, Kyu-Jung

    2005-01-01

    Over the past few years high precision three-dimensional (3D) full body laser scanners have been developed to be used as a powerful anthropometry tool for quantification of the morphology of the human body. The full body scanner can quickly extract body characteristics in non-contact fashion. It is required for the Anthropometry and Biomechanics Facility (ABF) to have capabilities for kinematics simulation of a digital human at various postures whereas the laser scanner only allows capturing a single static posture at each time. During this summer fellowship period a theoretical study has been conducted to estimate an arbitrary posture with a series of example postures through finite element (FE) approximation and found that four-point isoparametric FE approximation would result in reasonable maximum position errors less than 5%. Subsequent pilot scan experiments demonstrated that a bead marker with a nominal size of 6 mm could be used as a marker for digitizing 3-D coordinates of anatomical landmarks for further kinematic analysis. Two sessions of human subject testing were conducted for reconstruction of an arbitrary postures from a set of example postures for each joint motion for the forearm/hand complex and the whole upper extremity.

  7. Comparison of quasi-3D and full-3D laser wakefield PIC simulations using azimuthal mode decomposition

    NASA Astrophysics Data System (ADS)

    Dalichaouch, Thamine; Yu, Peicheng; Davidson, Asher; Mori, Warren; Vieira, Jorge; Fonseca, Ricardo

    2015-11-01

    Laser wakefield acceleration (LWFA) has attracted a lot of interest as a possible compact particle accelerator. However, 3D simulations of plasma-based accelerators are computationally intensive, sometimes taking millions of core hours on today's computers. A quasi-3D particle-In-cell (PIC) approach has been developed to take advantage of azimuthal symmetry in LWFA (and PWFA) simulations by using a particle-in-cell description in r-z and a Fourier description in φ. Quasi-3D simulations of LWFA are computationally more efficient and faster than Full-3D simulations because only first few azimuthal harmonics are needed to capture the physics of the problem. We have developed a cylindrical mode decomposition diagnostic for 3D Cartesian geometry simulations to analyze the agreement between full-3D and quasi-3D PIC simulations of laser and beam-plasma interactions. The diagnostic interpolates field data from Full-3D PIC simulations onto an irregular cylindrical grid (r , φ , z). A Fourier decomposition is then performed on the interpolated 3D simulation data along the azimuthal direction. This diagnostic has the added advantage of separating out the wakefields from the laser field. Preliminary results for this diagnostic of LWFA and PWFA simulations with symmetric and nearly symmetric spot sizes as well as of laser-plasma interactions using lasers with orbital angular momentum (higher order Laguerre-Gaussian modes) will be presented.

  8. 3D Hydrodynamic Simulations of Relativistic Jets

    NASA Astrophysics Data System (ADS)

    Hughes, P. A.; Miller, M. A.; Duncan, G. C.; Swift, C. M.

    1998-12-01

    We present the results of validation runs and the first extragalactic jet simulations performed with a 3D relativistic numerical hydrodynamic code employing a solver of the RHLLE type and using adaptive mesh refinement (AMR; Duncan & Hughes, 1994, Ap. J., 436, L119). Test problems include the shock tube, blast wave and spherical shock reflection (implosion). Trials with the code show that as a consequence of AMR it is viable to perform exploratory runs on workstation class machines (with no more than 128Mb of memory) prior to production runs. In the former case we achieve a resolution not much less than that normally regarded as the minimum needed to capture the essential physics of a problem, which means that such runs can provide valuable guidance allowing the optimum use of supercomputer resources. We present initial results from a program to explore the 3D stability properties of flows previously studied using a 2D axisymmetric code, and our first attempt to explore the structure and morphology of a relativistic jet encountering an ambient density gradient that mimics an ambient inhomogeneity or cloud.

  9. Simulating coronal condensation dynamics in 3D

    NASA Astrophysics Data System (ADS)

    Moschou, S. P.; Keppens, R.; Xia, C.; Fang, X.

    2015-12-01

    We present numerical simulations in 3D settings where coronal rain phenomena take place in a magnetic configuration of a quadrupolar arcade system. Our simulation is a magnetohydrodynamic simulation including anisotropic thermal conduction, optically thin radiative losses, and parametrised heating as main thermodynamical features to construct a realistic arcade configuration from chromospheric to coronal heights. The plasma evaporation from chromospheric and transition region heights eventually causes localised runaway condensation events and we witness the formation of plasma blobs due to thermal instability, that evolve dynamically in the heated arcade part and move gradually downwards due to interchange type dynamics. Unlike earlier 2.5D simulations, in this case there is no large scale prominence formation observed, but a continuous coronal rain develops which shows clear indications of Rayleigh-Taylor or interchange instability, that causes the denser plasma located above the transition region to fall down, as the system moves towards a more stable state. Linear stability analysis is used in the non-linear regime for gaining insight and giving a prediction of the system's evolution. After the plasma blobs descend through interchange, they follow the magnetic field topology more closely in the lower coronal regions, where they are guided by the magnetic dips.

  10. 3D Numerical simulations of oblique subduction

    NASA Astrophysics Data System (ADS)

    Malatesta, C.; Gerya, T.; Scambelluri, M.; Crispini, L.; Federico, L.; Capponi, G.

    2012-04-01

    In the past 2D numerical studies (e.g. Gerya et al., 2002; Gorczyk et al., 2007; Malatesta et al., 2012) provided evidence that during intraoceanic subduction a serpentinite channel forms above the downgoing plate. This channel forms as a result of hydration of the mantle wedge by uprising slab-fluids. Rocks buried at high depths are finally exhumed within this buoyant low-viscosity medium. Convergence rate in these 2D models was described by a trench-normal component of velocity. Several present and past subduction zones worldwide are however driven by oblique convergence between the plates, where trench-normal motion of the subducting slab is coupled with trench-parallel displacement of the plates. Can the exhumation mechanism and the exhumation rates of high-pressure rocks be affected by the shear component of subduction? And how uprise of these rocks can vary along the plate margin? We tried to address these questions performing 3D numerical models that simulate an intraoceanic oblique subduction. The models are based on thermo-mechanical equations that are solved with finite differences method and marker-in-cell techniques combined with multigrid approach (Gerya, 2010). In most of the models a narrow oceanic basin (500 km-wide) surrounded by continental margins is depicted. The basin is floored by either layered or heterogeneous oceanic lithosphere with gabbro as discrete bodies in serpentinized peridotite and a basaltic layer on the top. A weak zone in the mantle is prescribed to control the location of subduction initiation and therefore the plate margins geometry. Finally, addition of a third dimension in the simulations allowed us to test the role of different plate margin geometries on oblique subduction dynamics. In particular in each model we modified the dip angle of the weak zone and its "lateral" geometry (e.g. continuous, segmented). We consider "continuous" weak zones either parallel or increasingly moving away from the continental margins

  11. Non-isothermal 3D SDPD Simulations

    NASA Astrophysics Data System (ADS)

    Yang, Jun; Potami, Raffaele; Gatsonis, Nikolaos

    2012-11-01

    The study of fluids at micro and nanoscale requires new modeling and computational approaches. Smooth Particle Dissipative Dynamics (SDPD) is a mesh-free method that provides a bridge between the continuum equations of hydrodynamics embedded in the Smooth Particle Hydrodynamics approach and the molecular nature embedded in the DPD approach. SDPD is thermodynamically consistent, does not rely on arbitrary coefficients for its thermostat, involves realistic transport coefficients, and includes fluctuation terms. SDPD is implemented in our work for arbitrary 3D geometries with a methodology to model solid wall boundary conditions. We present simulations for isothermal flows for verification of our approach. The entropy equation is implemented with a velocity-entropy Verlet integration algorithm Flows with heat transfer are simulated for verification of the SDPD. We present also the self-diffusion coefficient derived from SDPD simulations for gases and liquids. Results show the scale dependence of self-diffusion coefficient on SDPD particle size. Computational Mathematics Program of the Air Force Office of Scientific Research under grant/contract number FA9550-06-1-0236.

  12. Respiratory motion compensation for simultaneous PET/MR based on a 3D-2D registration of strongly undersampled radial MR data: a simulation study

    NASA Astrophysics Data System (ADS)

    Rank, Christopher M.; Heußer, Thorsten; Flach, Barbara; Brehm, Marcus; Kachelrieß, Marc

    2015-03-01

    We propose a new method for PET/MR respiratory motion compensation, which is based on a 3D-2D registration of strongly undersampled MR data and a) runs in parallel with the PET acquisition, b) can be interlaced with clinical MR sequences, and c) requires less than one minute of the total MR acquisition time per bed position. In our simulation study, we applied a 3D encoded radial stack-of-stars sampling scheme with 160 radial spokes per slice and an acquisition time of 38 s. Gated 4D MR images were reconstructed using a 4D iterative reconstruction algorithm. Based on these images, motion vector fields were estimated using our newly-developed 3D-2D registration framework. A 4D PET volume of a patient with eight hot lesions in the lungs and upper abdomen was simulated and MoCo 4D PET images were reconstructed based on the motion vector fields derived from MR. For evaluation, average SUVmean values of the artificial lesions were determined for a 3D, a gated 4D, a MoCo 4D and a reference (with ten-fold measurement time) gated 4D reconstruction. Compared to the reference, 3D reconstructions yielded an underestimation of SUVmean values due to motion blurring. In contrast, gated 4D reconstructions showed the highest variation of SUVmean due to low statistics. MoCo 4D reconstructions were only slightly affected by these two sources of uncertainty resulting in a significant visual and quantitative improvement in terms of SUVmean values. Whereas temporal resolution was comparable to the gated 4D images, signal-to-noise ratio and contrast-to-noise ratio were close to the 3D reconstructions.

  13. 3D Fiber Orientation Simulation for Plastic Injection Molding

    NASA Astrophysics Data System (ADS)

    Lin, Baojiu; Jin, Xiaoshi; Zheng, Rong; Costa, Franco S.; Fan, Zhiliang

    2004-06-01

    Glass fiber reinforced polymer is widely used in the products made using injection molding processing. The distribution of fiber orientation inside plastic parts has direct effects on quality of molded parts. Using computer simulation to predict fiber orientation distribution is one of most efficient ways to assist engineers to do warpage analysis and to find a good design solution to produce high quality plastic parts. Fiber orientation simulation software based on 2-1/2D (midplane /Dual domain mesh) techniques has been used in industry for a decade. However, the 2-1/2D technique is based on the planar Hele-Shaw approximation and it is not suitable when the geometry has complex three-dimensional features which cannot be well approximated by 2D shells. Recently, a full 3D simulation software for fiber orientation has been developed and integrated into Moldflow Plastics Insight 3D simulation software. The theory for this new 3D fiber orientation calculation module is described in this paper. Several examples are also presented to show the benefit in using 3D fiber orientation simulation.

  14. Nonlaser-based 3D surface imaging

    SciTech Connect

    Lu, Shin-yee; Johnson, R.K.; Sherwood, R.J.

    1994-11-15

    3D surface imaging refers to methods that generate a 3D surface representation of objects of a scene under viewing. Laser-based 3D surface imaging systems are commonly used in manufacturing, robotics and biomedical research. Although laser-based systems provide satisfactory solutions for most applications, there are situations where non laser-based approaches are preferred. The issues that make alternative methods sometimes more attractive are: (1) real-time data capturing, (2) eye-safety, (3) portability, and (4) work distance. The focus of this presentation is on generating a 3D surface from multiple 2D projected images using CCD cameras, without a laser light source. Two methods are presented: stereo vision and depth-from-focus. Their applications are described.

  15. 3D Simulations of the Beehive Proplyd

    NASA Astrophysics Data System (ADS)

    Feitosa, J. A.; Vasconcelos, M. J.; Cerqueira, A. H.

    2014-10-01

    Some star formation regions, like the Orion nebula, have stars of different masses, from massive stars, responsible for strong ionizing winds and HII regions, to low-mass stars, which spend a long time in the protostellar phase, and are frequently associated with protostellar disks and jets. Massive O or B stars emit a great deal of UV radiation, able to dissociate the hydrogen molecule (FUV radiation, energies between 6-13 eV), to ionize the atomic hydrogen (EUV radiation, energies greater than 13.6 eV) and heat the gas. Around these stars, a large and hot (10^{4}K) region is formed, known as HII region. T-Tauri stars inside HII regions produce a type of young stellar object, a proplyd, described with accuracy in O'Dell et al. (1993). Proplyds exhibit a cometary shape from which we can distinguish a central low-mass star with an accretion disk, an ionization front, a photodissociation region and, sometimes, an external bow shock and a protostellar jet. Its morphological characteristics depends on the distance between the low-mass star and the source of the ionizing radiation. The Beehive, a giant proplyd in Orion Nebula, has attracted attention due to its exotic system of rings coaxial to the HH540 jet's axis. Bally et al. (2005) suggested that the rings are perturbations due to the crossing of the ionization front by the jet. In this work, we test this hypothesis making 3D hydrodynamic numerical simulations over an adaptive grid, using the Yguazú-A code (Raga et al., 2000), properly adapted for the Beehive conditions. Our results show that the jet causes a perturbation in the ionization front of the proplyd, but is necessary to adjust carefully some parameters of the jet like its velocity and ejection frequency in order to have the results matching the observations.

  16. 3D visualization of port simulation.

    SciTech Connect

    Horsthemke, W. H.; Macal, C. M.; Nevins, M. R.

    1999-06-14

    Affordable and realistic three dimensional visualization technology can be applied to large scale constructive simulations such as the port simulation model, PORTSIM. These visualization tools enhance the experienced planner's ability to form mental models of how seaport operations will unfold when the simulation model is implemented and executed. They also offer unique opportunities to train new planners not only in the use of the simulation model but on the layout and design of seaports. Simulation visualization capabilities are enhanced by borrowing from work on interface design, camera control, and data presentation. Using selective fidelity, the designers of these visualization systems can reduce their time and efforts by concentrating on those features which yield the most value for their simulation. Offering the user various observational tools allows the freedom to simply watch or engage in the simulation without getting lost. Identifying the underlying infrastructure or cargo items with labels can provide useful information at the risk of some visual clutter. The PortVis visualization expands the PORTSIM user base which can benefit from the results provided by this capability, especially in strategic planning, mission rehearsal, and training. Strategic planners will immediately reap the benefits of seeing the impact of increased throughput visually without keeping track of statistical data. Mission rehearsal and training users will have an effective training tool to supplement their operational training exercises which are limited in number because of their high costs. Having another effective training modality in this visualization system allows more training to take place and more personnel to gain an understanding of seaport operations. This simulation and visualization training can be accomplished at lower cost than would be possible for the operational training exercises alone. The application of PORTSIM and PortVis will lead to more efficient

  17. Parallelization of Program to Optimize Simulated Trajectories (POST3D)

    NASA Technical Reports Server (NTRS)

    Hammond, Dana P.; Korte, John J. (Technical Monitor)

    2001-01-01

    This paper describes the parallelization of the Program to Optimize Simulated Trajectories (POST3D). POST3D uses a gradient-based optimization algorithm that reaches an optimum design point by moving from one design point to the next. The gradient calculations required to complete the optimization process, dominate the computational time and have been parallelized using a Single Program Multiple Data (SPMD) on a distributed memory NUMA (non-uniform memory access) architecture. The Origin2000 was used for the tests presented.

  18. 3D finite element simulations of high velocity projectile impact

    NASA Astrophysics Data System (ADS)

    Ožbolt, Joško; İrhan, Barış; Ruta, Daniela

    2015-09-01

    An explicit three-dimensional (3D) finite element (FE) code is developed for the simulation of high velocity impact and fragmentation events. The rate sensitive microplane material model, which accounts for large deformations and rate effects, is used as a constitutive law. In the code large deformation frictional contact is treated by forward incremental Lagrange multiplier method. To handle highly distorted and damaged elements the approach based on the element deletion is employed. The code is then used in 3D FE simulations of high velocity projectile impact. The results of the numerical simulations are evaluated and compared with experimental results. It is shown that it realistically predicts failure mode and exit velocities for different geometries of plain concrete slab. Moreover, the importance of some relevant parameters, such as contact friction, rate sensitivity, bulk viscosity and deletion criteria are addressed.

  19. 3-D simulation of nanopore structure for DNA sequencing.

    PubMed

    Park, Jun-Mo; Pak, Y Eugene; Chun, Honggu; Lee, Jong-Ho

    2012-07-01

    In this paper, we propose a method for simulating nanopore structure by using conventional 3-D simulation tool to mimic the I-V behavior of the nanopore structure. In the simulation, we use lightly doped silicon for ionic solution where some parameters like electron affinity and dielectric constant are fitted to consider the ionic solution. By using this method, we can simulate the I-V behavior of nanopore structure depending on the location and the size of the sphere shaped silicon oxide which is considered to be an indicator of a DNA base. In addition, we simulate an Ionic Field Effect Transistor (IFET) which has basically the nanopore structure, and show that the simulated curves follow sufficiently the I-V behavior of the measurement data. Therefore, we think it is reasonable to apply parameter modeling mentioned above to simulate nanopore structure. The key idea is to modify electron affinity of silicon which is used to mimic the KCl solution to avoid band bending and depletion inside the nanopore. We could efficiently utilize conventional 3-D simulation tool to simulate the I-V behavior of nanopore structures. PMID:22966538

  20. 3D Magnetron simulation with CST STUDIO SUITE

    SciTech Connect

    Balk, Monika C.

    2011-07-01

    The modeling of magnetrons compared to other tubes is more difficult since it requires 3D modeling rather than a 2D investigation. This is not only due to the geometry which can include complicated details to be modeled in 3D but also due to the interaction process itself. The electric field, magnetic field and particle movement span a 3D space. In this paper 3D simulations of a strapped magnetron with CSTSTUDIO SUITE{sup TM} are presented. (author)

  1. Elastically deformable 3D organs for haptic surgical simulation.

    PubMed

    Webster, Roger; Haluck, Randy; Ravenscroft, Rob; Mohler, Betty; Crouthamel, Eric; Frack, Tyson; Terlecki, Steve; Sheaffer, Jeremy

    2002-01-01

    This paper describes a technique for incorporating real-time elastically deformable 3D organs in haptic surgical simulators. Our system is a physically based particle model utilizing a mass-springs-damper connectivity with an implicit predictor to speed up calculations during each time step. The solution involves repeated application of Newton's 2ndd Law of motion: F = ma using an implicit solver for numerically solving the differential equations. PMID:15458154

  2. Advanced system for 3D dental anatomy reconstruction and 3D tooth movement simulation during orthodontic treatment

    NASA Astrophysics Data System (ADS)

    Monserrat, Carlos; Alcaniz-Raya, Mariano L.; Juan, M. Carmen; Grau Colomer, Vincente; Albalat, Salvador E.

    1997-05-01

    This paper describes a new method for 3D orthodontics treatment simulation developed for an orthodontics planning system (MAGALLANES). We develop an original system for 3D capturing and reconstruction of dental anatomy that avoid use of dental casts in orthodontic treatments. Two original techniques are presented, one direct in which data are acquired directly form patient's mouth by mean of low cost 3D digitizers, and one mixed in which data are obtained by 3D digitizing of hydrocollids molds. FOr this purpose we have designed and manufactured an optimized optical measuring system based on laser structured light. We apply these 3D dental models to simulate 3D movement of teeth, including rotations, during orthodontic treatment. The proposed algorithms enable to quantify the effect of orthodontic appliance on tooth movement. The developed techniques has been integrated in a system named MAGALLANES. This original system present several tools for 3D simulation and planning of orthodontic treatments. The prototype system has been tested in several orthodontic clinic with very good results.

  3. Insights into mechanism of pyrido[2,3-d]pyrimidines as DYRK1A inhibitors based on molecular dynamic simulations.

    PubMed

    Li, Jiao Jiao; Tian, Yue Li; Zhai, Hong Lin; Lv, Min; Zhang, Xiao Yun

    2016-08-01

    DYRK1A is characterized by the early development and regulation of neuronal proliferation, and its over expression gives rise to neurological abnormalities. As the promising DYRK1A inhibitors, the binding mechanism between DYRK1A and pyrido[2,3-d]pyrimidines derivatives at molecular level are still veiled. In this article, it was achieved to get the structural insights into pyrido[2,3-d]pyrimidines derivatives as DYRK1A inhibitors by means of comprehensive computational approaches involving molecular docking, molecular dynamics simulation, free energy calculation, and energy decomposition analysis. The calculated energy values were highly consistent with the experimental activities. Based on the individual energy terms analysis, the van der Waals interaction was the major leading force in the DYRK1A-ligand interaction. Lys188 was the important residue that formed the hydrogen bond, which improved the inhibitory activity. Furthermore, four novel inhibitors with higher predicted activity were designed based on the obtained findings and confirmed by molecular simulations. Our study is expected to provide significant drug design strategy for the development of more promising DYRK1A inhibitors. Proteins 2016; 84:1108-1123. © 2016 Wiley Periodicals, Inc. PMID:27119584

  4. 3-D CFD Simulation and Validation of Oxygen-Rich Hydrocarbon Combustion in a Gas-Centered Swirl Coaxial Injector using a Flamelet-Based Approach

    NASA Technical Reports Server (NTRS)

    Richardson, Brian; Kenny, Jeremy

    2015-01-01

    Injector design is a critical part of the development of a rocket Thrust Chamber Assembly (TCA). Proper detailed injector design can maximize propulsion efficiency while minimizing the potential for failures in the combustion chamber. Traditional design and analysis methods for hydrocarbon-fuel injector elements are based heavily on empirical data and models developed from heritage hardware tests. Using this limited set of data produces challenges when trying to design a new propulsion system where the operating conditions may greatly differ from heritage applications. Time-accurate, Three-Dimensional (3-D) Computational Fluid Dynamics (CFD) modeling of combusting flows inside of injectors has long been a goal of the fluid analysis group at Marshall Space Flight Center (MSFC) and the larger CFD modeling community. CFD simulation can provide insight into the design and function of an injector that cannot be obtained easily through testing or empirical comparisons to existing hardware. However, the traditional finite-rate chemistry modeling approach utilized to simulate combusting flows for complex fuels, such as Rocket Propellant-2 (RP-2), is prohibitively expensive and time consuming even with a large amount of computational resources. MSFC has been working, in partnership with Streamline Numerics, Inc., to develop a computationally efficient, flamelet-based approach for modeling complex combusting flow applications. In this work, a flamelet modeling approach is used to simulate time-accurate, 3-D, combusting flow inside a single Gas Centered Swirl Coaxial (GCSC) injector using the flow solver, Loci-STREAM. CFD simulations were performed for several different injector geometries. Results of the CFD analysis helped guide the design of the injector from an initial concept to a tested prototype. The results of the CFD analysis are compared to data gathered from several hot-fire, single element injector tests performed in the Air Force Research Lab EC-1 test facility

  5. 3D multifocus astigmatism and compressed sensing (3D MACS) based superresolution reconstruction

    PubMed Central

    Huang, Jiaqing; Sun, Mingzhai; Gumpper, Kristyn; Chi, Yuejie; Ma, Jianjie

    2015-01-01

    Single molecule based superresolution techniques (STORM/PALM) achieve nanometer spatial resolution by integrating the temporal information of the switching dynamics of fluorophores (emitters). When emitter density is low for each frame, they are located to the nanometer resolution. However, when the emitter density rises, causing significant overlapping, it becomes increasingly difficult to accurately locate individual emitters. This is particularly apparent in three dimensional (3D) localization because of the large effective volume of the 3D point spread function (PSF). The inability to precisely locate the emitters at a high density causes poor temporal resolution of localization-based superresolution technique and significantly limits its application in 3D live cell imaging. To address this problem, we developed a 3D high-density superresolution imaging platform that allows us to precisely locate the positions of emitters, even when they are significantly overlapped in three dimensional space. Our platform involves a multi-focus system in combination with astigmatic optics and an ℓ1-Homotopy optimization procedure. To reduce the intrinsic bias introduced by the discrete formulation of compressed sensing, we introduced a debiasing step followed by a 3D weighted centroid procedure, which not only increases the localization accuracy, but also increases the computation speed of image reconstruction. We implemented our algorithms on a graphic processing unit (GPU), which speeds up processing 10 times compared with central processing unit (CPU) implementation. We tested our method with both simulated data and experimental data of fluorescently labeled microtubules and were able to reconstruct a 3D microtubule image with 1000 frames (512×512) acquired within 20 seconds. PMID:25798314

  6. 3D multifocus astigmatism and compressed sensing (3D MACS) based superresolution reconstruction.

    PubMed

    Huang, Jiaqing; Sun, Mingzhai; Gumpper, Kristyn; Chi, Yuejie; Ma, Jianjie

    2015-03-01

    Single molecule based superresolution techniques (STORM/PALM) achieve nanometer spatial resolution by integrating the temporal information of the switching dynamics of fluorophores (emitters). When emitter density is low for each frame, they are located to the nanometer resolution. However, when the emitter density rises, causing significant overlapping, it becomes increasingly difficult to accurately locate individual emitters. This is particularly apparent in three dimensional (3D) localization because of the large effective volume of the 3D point spread function (PSF). The inability to precisely locate the emitters at a high density causes poor temporal resolution of localization-based superresolution technique and significantly limits its application in 3D live cell imaging. To address this problem, we developed a 3D high-density superresolution imaging platform that allows us to precisely locate the positions of emitters, even when they are significantly overlapped in three dimensional space. Our platform involves a multi-focus system in combination with astigmatic optics and an ℓ 1-Homotopy optimization procedure. To reduce the intrinsic bias introduced by the discrete formulation of compressed sensing, we introduced a debiasing step followed by a 3D weighted centroid procedure, which not only increases the localization accuracy, but also increases the computation speed of image reconstruction. We implemented our algorithms on a graphic processing unit (GPU), which speeds up processing 10 times compared with central processing unit (CPU) implementation. We tested our method with both simulated data and experimental data of fluorescently labeled microtubules and were able to reconstruct a 3D microtubule image with 1000 frames (512×512) acquired within 20 seconds. PMID:25798314

  7. Simulating imaging spectrometer data of a mixed old-growth forest: A parameterization of a 3D radiative transfer model based on airborne and terrestrial laser scanning

    NASA Astrophysics Data System (ADS)

    Schneider, F. D.; Leiterer, R.; Morsdorf, F.; Gastellu-Etchegorry, J.; Lauret, N.; Pfeifer, N.; Schaepman, M. E.

    2013-12-01

    Remote sensing offers unique potential to study forest ecosystems by providing spatially and temporally distributed information that can be linked with key biophysical and biochemical variables. The estimation of biochemical constituents of leaves from remotely sensed data is of high interest revealing insight on photosynthetic processes, plant health, plant functional types, and speciation. However, the scaling of observations at the canopy level to the leaf level or vice versa is not trivial due to the structural complexity of forests. Thus, a common solution for scaling spectral information is the use of physically-based radiative transfer models. The discrete anisotropic radiative transfer model (DART), being one of the most complete coupled canopy-atmosphere 3D radiative transfer models, was parameterized based on airborne and in-situ measurements. At-sensor radiances were simulated and compared with measurements from an airborne imaging spectrometer. The study was performed on the Laegern site, a temperate mixed forest characterized by steep slopes, a heterogeneous spectral background, and deciduous and coniferous trees at different development stages (dominated by beech trees; 47°28'42.0' N, 8°21'51.8' E, 682 m asl, Switzerland). It is one of the few studies conducted on an old-growth forest. Particularly the 3D modeling of the complex canopy architecture is crucial to model the interaction of photons with the vegetation canopy and its background. Thus, we developed two forest reconstruction approaches: 1) based on a voxel grid, and 2) based on individual tree detection. Both methods are transferable to various forest ecosystems and applicable at scales between plot and landscape. Our results show that the newly developed voxel grid approach is favorable over a parameterization based on individual trees. In comparison to the actual imaging spectrometer data, the simulated images exhibit very similar spatial patterns, whereas absolute radiance values are

  8. 3D printed PLA-based scaffolds

    PubMed Central

    Serra, Tiziano; Mateos-Timoneda, Miguel A; Planell, Josep A; Navarro, Melba

    2013-01-01

    Rapid prototyping (RP), also known as additive manufacturing (AM), has been well received and adopted in the biomedical field. The capacity of this family of techniques to fabricate customized 3D structures with complex geometries and excellent reproducibility has revolutionized implantology and regenerative medicine. In particular, nozzle-based systems allow the fabrication of high-resolution polylactic acid (PLA) structures that are of interest in regenerative medicine. These 3D structures find interesting applications in the regenerative medicine field where promising applications including biodegradable templates for tissue regeneration purposes, 3D in vitro platforms for studying cell response to different scaffolds conditions and for drug screening are considered among others. Scaffolds functionality depends not only on the fabrication technique, but also on the material used to build the 3D structure, the geometry and inner architecture of the structure, and the final surface properties. All being crucial parameters affecting scaffolds success. This Commentary emphasizes the importance of these parameters in scaffolds’ fabrication and also draws the attention toward the versatility of these PLA scaffolds as a potential tool in regenerative medicine and other medical fields. PMID:23959206

  9. Simulating microbial degradation of organic matter in a simple porous system using the 3-D diffusion based model MOSAIC

    NASA Astrophysics Data System (ADS)

    Monga, O.; Garnier, P.; Pot, V.; Coucheney, E.; Nunan, N.; Otten, W.; Chenu, C.

    2013-10-01

    This paper deals with the simulation of microbial degradation in soil within pore space at microscopic scale. Pore space was described using sphere network coming from a geometrical modeling algorithm. The biological model was improved regarding previous work in order to include transformation of dissolved organic compounds and diffusion processes. Our model was tested using experimental results of a simple substrate decomposition (Fructose) within a simple media (the sand). Diverse microbial communities were inoculated. Separated incubations in microcosms were carried out using 5 different bacterial communities at 2 different water potentials of -10 cm and -100 cm of water. We calibrated the biological parameters by means of experimental data obtained at high water content and we tested the model without any parameters change at low water content. Same as for experimental data, our simulation results showed the decrease in water content involved the decrease of mineralisation. The model was able to simulate the decrease of connectivity between substrate and microorganism due the decrease of water content.

  10. Simulating microbial degradation of organic matter in a simple porous system using the 3-D diffusion-based model MOSAIC

    NASA Astrophysics Data System (ADS)

    Monga, O.; Garnier, P.; Pot, V.; Coucheney, E.; Nunan, N.; Otten, W.; Chenu, C.

    2014-04-01

    This paper deals with the simulation of microbial degradation of organic matter in soil within the pore space at a microscopic scale. Pore space was analysed with micro-computed tomography and described using a sphere network coming from a geometrical modelling algorithm. The biological model was improved regarding previous work in order to include the transformation of dissolved organic compounds and diffusion processes. We tested our model using experimental results of a simple substrate decomposition experiment (fructose) within a simple medium (sand) in the presence of different bacterial strains. Separate incubations were carried out in microcosms using five different bacterial communities at two different water potentials of -10 and -100 cm of water. We calibrated the biological parameters by means of experimental data obtained at high water content, and we tested the model without changing any parameters at low water content. Same as for the experimental data, our simulation results showed that the decrease in water content caused a decrease of mineralization rate. The model was able to simulate the decrease of connectivity between substrate and microorganism due the decrease of water content.

  11. Simulation of 3D infrared scenes using random fields model

    NASA Astrophysics Data System (ADS)

    Shao, Xiaopeng; Zhang, Jianqi

    2001-09-01

    Analysis and simulation of smart munitions requires imagery for the munition's sensor to view. The traditional infrared background simulations are always limited in the plane scene studies. A new method is described to synthesize the images in 3D view and with various terrains texture. We develop the random fields model and temperature fields to simulate 3D infrared scenes. Generalized long-correlation (GLC) model, one of random field models, will generate both the 3D terrains skeleton data and the terrains texture in this work. To build the terrain mesh with the random fields, digital elevation models (DEM) are introduced in the paper. And texture mapping technology will perform the task of pasting the texture in the concavo-convex surfaces of the 3D scene. The simulation using random fields model is a very available method to produce 3D infrared scene with great randomicity and reality.

  12. 3D finite element simulation of microstructure evolution in blade forging of Ti-6Al-4V alloy based on the internal state variable models

    NASA Astrophysics Data System (ADS)

    Luo, Jiao; Wu, Bin; Li, Miao-Quan

    2012-02-01

    The physically-based internal state variable (ISV) models were used to describe the changes of dislocation density, grain size, and flow stress in the high temperature deformation of titanium alloys in this study. The constants of the present models could be identified based on experimental results, which were conducted at deformation temperatures ranging from 1093 K to 1303 K, height reductions ranging from 20% to 60%, and the strain rates of 0.001, 0.01, 0.1, 1.0, and 10.0 s-1. The physically-based internal state variable models were implemented into the commercial finite element (FE) code. Then, a three-dimensional (3D) FE simulation system coupling of deformation, heat transfer, and microstructure evolution was developed for the blade forging of Ti-6Al-4V alloy. FE analysis was carried out to simulate the microstructure evolution in the blade forging of Ti-6Al-4V alloy. Finally, the blade forging tests of Ti-6Al-4V alloy were performed to validate the results of FE simulation. According to the tensile tests, it is seen that the mechanical properties, such as tensile strength and elongation, satisfy the application requirements well. The maximum and minimum differences between the calculated and experimental grain size of primary α phase are 11.71% and 4.23%, respectively. Thus, the industrial trials show a good agreement with FE simulation of blade forging.

  13. 3-D target-based distributed smart camera network localization.

    PubMed

    Kassebaum, John; Bulusu, Nirupama; Feng, Wu-Chi

    2010-10-01

    For distributed smart camera networks to perform vision-based tasks such as subject recognition and tracking, every camera's position and orientation relative to a single 3-D coordinate frame must be accurately determined. In this paper, we present a new camera network localization solution that requires successively showing a 3-D feature point-rich target to all cameras, then using the known geometry of a 3-D target, cameras estimate and decompose projection matrices to compute their position and orientation relative to the coordinatization of the 3-D target's feature points. As each 3-D target position establishes a distinct coordinate frame, cameras that view more than one 3-D target position compute translations and rotations relating different positions' coordinate frames and share the transform data with neighbors to facilitate realignment of all cameras to a single coordinate frame. Compared to other localization solutions that use opportunistically found visual data, our solution is more suitable to battery-powered, processing-constrained camera networks because it requires communication only to determine simultaneous target viewings and for passing transform data. Additionally, our solution requires only pairwise view overlaps of sufficient size to see the 3-D target and detect its feature points, while also giving camera positions in meaningful units. We evaluate our algorithm in both real and simulated smart camera networks. In the real network, position error is less than 1 ('') when the 3-D target's feature points fill only 2.9% of the frame area. PMID:20679031

  14. 3D MHD Simulations of Spheromak Compression

    NASA Astrophysics Data System (ADS)

    Stuber, James E.; Woodruff, Simon; O'Bryan, John; Romero-Talamas, Carlos A.; Darpa Spheromak Team

    2015-11-01

    The adiabatic compression of compact tori could lead to a compact and hence low cost fusion energy system. The critical scientific issues in spheromak compression relate both to confinement properties and to the stability of the configuration undergoing compression. We present results from the NIMROD code modified with the addition of magnetic field coils that allow us to examine the role of rotation on the stability and confinement of the spheromak (extending prior work for the FRC). We present results from a scan in initial rotation, from 0 to 100km/s. We show that strong rotational shear (10km/s over 1cm) occurs. We compare the simulation results with analytic scaling relations for adiabatic compression. Work performed under DARPA grant N66001-14-1-4044.

  15. 3-D Imaging and Simulation for Nephron Sparing Surgical Training.

    PubMed

    Ahmadi, Hamed; Liu, Jen-Jane

    2016-08-01

    Minimally invasive partial nephrectomy (MIPN) is now considered the procedure of choice for small renal masses largely based on functional advantages over traditional open surgery. Lack of haptic feedback, the need for spatial understanding of tumor borders, and advanced operative techniques to minimize ischemia time or achieve zero-ischemia PN are among factors that make MIPN a technically demanding operation with a steep learning curve for inexperienced surgeons. Surgical simulation has emerged as a useful training adjunct in residency programs to facilitate the acquisition of these complex operative skills in the setting of restricted work hours and limited operating room time and autonomy. However, the majority of available surgical simulators focus on basic surgical skills, and procedure-specific simulation is needed for optimal surgical training. Advances in 3-dimensional (3-D) imaging have also enhanced the surgeon's ability to localize tumors intraoperatively. This article focuses on recent procedure-specific simulation models for laparoscopic and robotic-assisted PN and advanced 3-D imaging techniques as part of pre- and some cases, intraoperative surgical planning. PMID:27314271

  16. Patient-Specific Carotid Plaque Progression Simulation Using 3D Meshless Generalized Finite Difference Models with Fluid-Structure Interactions Based on Serial In Vivo MRI Data.

    PubMed

    Yang, Chun; Tang, Dalin; Atluri, Satya

    2011-01-01

    Previously, we introduced a computational procedure based on three-dimensional meshless generalized finite difference (MGFD) method and serial magnetic resonance imaging (MRI) data to quantify patient-specific carotid atherosclerotic plaque growth functions and simulate plaque progression. Structure-only models were used in our previous report. In this paper, fluid-stricture interaction (FSI) was added to improve on prediction accuracy. One participating patient was scanned three times (T1, T2, and T3, at intervals of about 18 months) to obtain plaque progression data. Blood flow was assumed to laminar, Newtonian, viscous and incompressible. The Navier-Stokes equations with arbitrary Lagrangian-Eulerian (ALE) formulation were used as the governing equations. Plaque material was assumed to be uniform, homogeneous, isotropic, linear, and nearly incompressible. The linear elastic model was used. The 3D FSI plaque model was discretized and solved using a meshless generalized finite difference (GFD) method. Growth functions with a) morphology alone; b) morphology and plaque wall stress (PWS); morphology and flow shear stress (FSS), and d) morphology, PWS and FSS were introduced to predict future plaque growth based on previous time point data. Starting from the T2 plaque geometry, plaque progression was simulated by solving the FSI model and adjusting plaque geometry using plaque growth functions iteratively until T3 is reached. Numerically simulated plaque progression agreed very well with the target T3 plaque geometry with errors ranging from 8.62%, 7.22%, 5.77% and 4.39%, with the growth function including morphology, plaque wall stress and flow shear stress terms giving the best predictions. Adding flow shear stress term to the growth function improved the prediction error from 7.22% to 4.39%, a 40% improvement. We believe this is the first time 3D plaque progression FSI simulation based on multi-year patient-tracking data was reported. Serial MRI-based progression

  17. Numerical simulation of vortex breakdown via 3-D Euler equations

    NASA Astrophysics Data System (ADS)

    Le, T. H.; Mege, P.; Morchoisne, Y.

    1990-06-01

    The long term goal is the modeling of vortex breakdown that occurs in some aerodynamic configurations at high angle of attack, (i.e., fighters with highly swept delta wings or missiles). A numerical simulation was made based on solving the 3-D Euler equations for an usteady incompressible flow. Preliminary results were obtained using a pressure-velocity formulation with periodic boundary conditions, the Euler equations being discretized by 2nd order finite difference schemes. The continuation to this work by implementing more realistic boundary conditions and 4th order finite difference discretization schemes are presented.

  18. Acoustic simulation in realistic 3D virtual scenes

    NASA Astrophysics Data System (ADS)

    Gozard, Patrick; Le Goff, Alain; Naz, Pierre; Cathala, Thierry; Latger, Jean

    2003-09-01

    The simulation workshop CHORALE developed in collaboration with OKTAL SE company for the French MoD is used by government services and industrial companies for weapon system validation and qualification trials in the infrared domain. The main operational reference for CHORALE is the assessment of the infrared guidance system of the Storm Shadow missile French version, called Scalp. The use of CHORALE workshop is now extended to the acoustic domain. The main objective is the simulation of the detection of moving vehicles in realistic 3D virtual scenes. This article briefly describes the acoustic model in CHORALE. The 3D scene is described by a set of polygons. Each polygon is characterized by its acoustic resistivity or its complex impedance. Sound sources are associated with moving vehicles and are characterized by their spectra and directivities. A microphone sensor is defined by its position, its frequency band and its sensitivity. The purpose of the acoustic simulation is to calculate the incoming acoustic pressure on microphone sensors. CHORALE is based on a generic ray tracing kernel. This kernel possesses original capabilities: computation time is nearly independent on the scene complexity, especially the number of polygons, databases are enhanced with precise physical data, special mechanisms of antialiasing have been developed that enable to manage very accurate details. The ray tracer takes into account the wave geometrical divergence and the atmospheric transmission. The sound wave refraction is simulated and rays cast in the 3D scene are curved according to air temperature gradient. Finally, sound diffraction by edges (hill, wall,...) is also taken into account.

  19. A task-based parallelism and vectorized approach to 3D Method of Characteristics (MOC) reactor simulation for high performance computing architectures

    NASA Astrophysics Data System (ADS)

    Tramm, John R.; Gunow, Geoffrey; He, Tim; Smith, Kord S.; Forget, Benoit; Siegel, Andrew R.

    2016-05-01

    In this study we present and analyze a formulation of the 3D Method of Characteristics (MOC) technique applied to the simulation of full core nuclear reactors. Key features of the algorithm include a task-based parallelism model that allows independent MOC tracks to be assigned to threads dynamically, ensuring load balancing, and a wide vectorizable inner loop that takes advantage of modern SIMD computer architectures. The algorithm is implemented in a set of highly optimized proxy applications in order to investigate its performance characteristics on CPU, GPU, and Intel Xeon Phi architectures. Speed, power, and hardware cost efficiencies are compared. Additionally, performance bottlenecks are identified for each architecture in order to determine the prospects for continued scalability of the algorithm on next generation HPC architectures.

  20. Numerical Simulation of 3D Hydraulic Fracturing Based on an Improved Flow-Stress-Damage Model and a Parallel FEM Technique

    NASA Astrophysics Data System (ADS)

    Li, L. C.; Tang, C. A.; Li, G.; Wang, S. Y.; Liang, Z. Z.; Zhang, Y. B.

    2012-09-01

    The failure mechanism of hydraulic fractures in heterogeneous geological materials is an important topic in mining and petroleum engineering. A three-dimensional (3D) finite element model that considers the coupled effects of seepage, damage, and the stress field is introduced. This model is based on a previously developed two-dimensional (2D) version of the model (RFPA2D-Rock Failure Process Analysis). The RFPA3D-Parallel model is developed using a parallel finite element method with a message-passing interface library. The constitutive law of this model considers strength and stiffness degradation, stress-dependent permeability for the pre-peak stage, and deformation-dependent permeability for the post-peak stage. Using this model, 3D modelling of progressive failure and associated fluid flow in rock are conducted and used to investigate the hydro-mechanical response of rock samples at laboratory scale. The responses investigated are the axial stress-axial strain together with permeability evolution and fracture patterns at various stages of loading. Then, the hydraulic fracturing process inside a rock specimen is numerically simulated. Three coupled processes are considered: (1) mechanical deformation of the solid medium induced by the fluid pressure acting on the fracture surfaces and the rock skeleton, (2) fluid flow within the fracture, and (3) propagation of the fracture. The numerically simulated results show that the fractures from a vertical wellbore propagate in the maximum principal stress direction without branching, turning, and twisting in the case of a large difference in the magnitude of the far-field stresses. Otherwise, the fracture initiates in a non-preferred direction and plane then turns and twists during propagation to become aligned with the preferred direction and plane. This pattern of fracturing is common when the rock formation contains multiple layers with different material properties. In addition, local heterogeneity of the rock

  1. Coherent Vortex Simulations of 3D isotropic turbulence

    NASA Astrophysics Data System (ADS)

    Goldstein, Daniel E.; Vasilyev, Oleg V.; Kevlahan, Nicholas K.-R.

    2006-11-01

    This is the first of three talks on the wavelet filter based dynamically adaptive eddy capturing computational methodology that unifies variable fidelity simulation approaches such as wavelet-based DNS, Coherent Vortex Simulation (CVS), and Stochastic Coherent Adaptive Large Eddy Simulation. The commonality of these approaches is their ability to identify and ``track" on an adaptive mesh energetic coherent vortical structures. In CVS the velocity field is decomposed into two orthogonal parts: a coherent, inhomogeneous, non-Gaussian component and an incoherent, homogeneous, Gaussian component. This separation of coherent and incoherent components is achieved by wavelet thresholding which can be viewed as a non-linear filter that depends on each flow realization. The essence of the CVS approach is to solve for the coherent non-Gaussian component of a turbulent flow field. It has been shown previously that second generation bi-orthogonal wavelet threshold filtering is able to decompose a turbulent velocity field such that the total resulting SGS dissipation is approximately zero. This physically allows a CVS simulation to recover low order statistics with no SGS model. In this work CVS simulations of decaying incompressible 3D isotropic turbulence are compared to DNS results. -6pt

  2. Rockfall assessment of natural hazards by 3D-simulation

    NASA Astrophysics Data System (ADS)

    Tobler, D.; Graf, K.; Krummenacher, B.

    2009-04-01

    Keywords: 3D rockfall modelling, protection measures, case study, ROFMOD 4.1 model In mountain areas many residential areas as well as important lifelines are exposed to potential rockfall events. The assessment of the hazard potential in a complex morphology with changing surface parameters and inhomogeneous forestation, call for an in-depth analysis of the physical processes involved. Therefore the different problems concerning the assessment of rockfall hazards have to be solved adequately. Moreover, due to the actual discussion about cost efficiency the planning of protective measures calls for (more) detailed information about the intensity and probability of expected rockfall incidents along a typical trajectory or for a given area. Today simulation models like GEOTEST's - ROFMOD 4.1 (2D and 3D) are important tools for hazard assessment. This simulation model produces profiles and maps with intensity and range and allows to calculate decisive parameters for the dimensioning optimized positioning of protection measures. Within the impact analysis the relevant scenarios according to their intensities are determined using a 3D rockfall model. It calculates the trajectories of rock-bodies with realistic forms based on physical laws from defined starting points within the mapped rock area as well as steep slopes with loose blocks. The movement is of any chosen particle with defined axis length ratio, rounding and specific weight is strongly influenced by the spatial resolution of the digital terrain model (DTM as well as the interaction with the underground and possible tree-impacts). Therefore, the following parameters are implemented in the rockfall model: geometry of blocks, underground plasticity (value of attenuation), surface roughness as well as forest quality (amount of trees per area (ha) and trunk diameter). A very important aspect is the geometry of the blocks. For realistic results only a simulation with real block shapes will be sucessful. For these

  3. Optimizing prostate needle biopsy through 3D simulation

    NASA Astrophysics Data System (ADS)

    Zeng, Jianchao; Kaplan, Charles; Xuan, Jian Hua; Sesterhenn, Isabell A.; Lynch, John H.; Freedman, Matthew T.; Mun, Seong K.

    1998-06-01

    Prostate needle biopsy is used for the detection of prostate cancer. The protocol of needle biopsy that is currently routinely used in the clinical environment is the systematic sextant technique, which defines six symmetric locations on the prostate surface for needle insertion. However, this protocol has been developed based on the long-term observation and experience of urologists. Little quantitative or scientific evidence supports the use of this biopsy technique. In this research, we aim at developing a statistically optimized new prostate needle biopsy protocol to improve the quality of diagnosis of prostate cancer. This new protocol will be developed by using a three-dimensional (3-D) computer- based probability map of prostate cancer. For this purpose, we have developed a computer-based 3-D visualization and simulation system with prostate models constructed from the digitized prostate specimens, in which the process of prostate needle biopsy can be simulated automatically by the computer. In this paper, we first develop an interactive biopsy simulation mode in the system, and evaluate the performance of the automatic biopsy simulation with the sextant biopsy protocol by comparing the results by the urologist using the interactive simulation mode with respect to 53 prostate models. This is required to confirm that the automatic simulation is accurate and reliable enough for the simulation with respect to a large number of prostate models. Then we compare the performance of the existing protocols using the automatic biopsy simulation system with respect to 107 prostate models, which will statistically identify if one protocol is better than another. Since the estimation of tumor volume is extremely important in determining the significance of a tumor and in deciding appropriate treatment methods, we further investigate correlation between the tumor volume and the positive core volume with 89 prostate models. This is done in order to develop a method to

  4. Fractal and fractional calculus to model hydrological processes with application to particle-based 2D and 3D landslide simulation

    NASA Astrophysics Data System (ADS)

    Martelloni, Gianluca; Bagnoli, Franco; Di Cintio, Pierfrancesco

    2015-04-01

    We integrate existing soil infiltration modeling with particle based methods in order to simulate two and three-dimensional setups of triggered landslides. Commonly, the infiltration models are based on continuum schemes (e.g. Eulerian approach) by means of which it is possible to define the field of the pore pressure within a soil. By contrast, the particle based methods follow a Lagrangian scheme that allows one to identify the particle trajectories and their dynamical properties. In this work, in order to simulate the triggering mechanism, we apply the classical, fractal and fractional Richards equations and the Mohr-Coulomb failure criterion, adapted to the molecular dynamics technique. In our scheme the (local) positive pore pressure is simply implemented as a perturbation of the rest state of each grain. Therefore, the pore pressure function can be interpreted as a time-space dependent scalar field acting on each particle. To initialize the system we generate, using a molecular dynamics based algorithm, a mechanically stable disk (2D) or sphere (3D) packing simulating the consolidated soil. In this way, we can built the micro and macro pore structure related to different infiltration time scales. The inter-particle interactions are modeled with a Lennard-Jones like potential. The particle positions are updated in time, after and during a rainfall, with standard molecular dynamics. We analyze the sensitivity of the model with respect to the variation of some parameters such as hydraulic conductivity, cohesion, slope and friction angle, soil depth and fractional order of the generalized infiltration model. In addition, we consider both regular and random particle configurations. The results of our simulations are found to be in agreement with real landslides. In particular, the mean velocity patterns of the simulated landslides appear extremely similar to the observed ones. Moreover, it is possible to apply the method of the inverse surface displacement

  5. 3D Ultrasonic Wave Simulations for Structural Health Monitoring

    NASA Technical Reports Server (NTRS)

    Campbell, Leckey Cara A/; Miler, Corey A.; Hinders, Mark K.

    2011-01-01

    Structural health monitoring (SHM) for the detection of damage in aerospace materials is an important area of research at NASA. Ultrasonic guided Lamb waves are a promising SHM damage detection technique since the waves can propagate long distances. For complicated flaw geometries experimental signals can be difficult to interpret. High performance computing can now handle full 3-dimensional (3D) simulations of elastic wave propagation in materials. We have developed and implemented parallel 3D elastodynamic finite integration technique (3D EFIT) code to investigate ultrasound scattering from flaws in materials. EFIT results have been compared to experimental data and the simulations provide unique insight into details of the wave behavior. This type of insight is useful for developing optimized experimental SHM techniques. 3D EFIT can also be expanded to model wave propagation and scattering in anisotropic composite materials.

  6. Physics and 3D in Flash Simulations: Open Source Reality

    NASA Astrophysics Data System (ADS)

    Harold, J. B.; Dusenbery, P.

    2009-12-01

    Over the last decade our ability to deliver simulations over the web has steadily advanced. The improvements in speed of the Adobe Flash engine, and the development of open source tools to expand it, allow us to deliver increasingly sophisticated simulation based games through the browser, with no additional downloads required. In this paper we will present activities we are developing as part of two asteroids education projects: Finding NEO (funded through NSF and NASA SMD), and Asteroids! (funded through NSF). The first activity is Rubble!, an asteroids deflection game built on the open source Box2D physics engine. This game challenges players to push asteroids in to safe orbits before they crash in to the Earth. The Box2D engine allows us to go well beyond simple 2-body orbital calculations and incorporate “rubble piles”. These objects, which are representative of many asteroids, are composed of 50 or more individual rocks which gravitationally bind and separate in realistic ways. Even bombs can be modeled with sufficient physical accuracy to convince players of the hazards of trying to “blow up” incoming asteroids. The ability to easily build games based on underlying physical models allows us to address physical misconceptions in a natural way: by having the player operate in a world that directly collides with those misconceptions. Rubble! provides a particularly compelling example of this due to the variety of well documented misconceptions regarding gravity. The second activity is a Light Curve challenge, which uses the open source PaperVision3D tools to analyze 3D asteroid models. The goal of this activity is to introduce the player to the concept of “light curves”, measurements of asteroid brightness over time which are used to calculate the asteroid’s period. These measurements can even be inverted to generate three dimensional models of asteroids that are otherwise too small and distant to directly image. Through the use of the Paper

  7. M3D project for simulation studies of plasmas

    SciTech Connect

    Park, W.; Belova, E.V.; Fu, G.Y.; Strauss, H.R.; Sugiyama, L.E.

    1998-12-31

    The M3D (Multi-level 3D) project carries out simulation studies of plasmas of various regimes using multi-levels of physics, geometry, and mesh schemes in one code package. This paper and papers by Strauss, Sugiyama, and Belova in this workshop describe the project, and present examples of current applications. The currently available physics models of the M3D project are MHD, two-fluids, gyrokinetic hot particle/MHD hybrid, and gyrokinetic particle ion/two-fluid hybrid models. The code can be run with both structured and unstructured meshes.

  8. 3D scene reconstruction based on 3D laser point cloud combining UAV images

    NASA Astrophysics Data System (ADS)

    Liu, Huiyun; Yan, Yangyang; Zhang, Xitong; Wu, Zhenzhen

    2016-03-01

    It is a big challenge capturing and modeling 3D information of the built environment. A number of techniques and technologies are now in use. These include GPS, and photogrammetric application and also remote sensing applications. The experiment uses multi-source data fusion technology for 3D scene reconstruction based on the principle of 3D laser scanning technology, which uses the laser point cloud data as the basis and Digital Ortho-photo Map as an auxiliary, uses 3DsMAX software as a basic tool for building three-dimensional scene reconstruction. The article includes data acquisition, data preprocessing, 3D scene construction. The results show that the 3D scene has better truthfulness, and the accuracy of the scene meet the need of 3D scene construction.

  9. A web-based 3D geological information visualization system

    NASA Astrophysics Data System (ADS)

    Song, Renbo; Jiang, Nan

    2013-03-01

    Construction of 3D geological visualization system has attracted much more concern in GIS, computer modeling, simulation and visualization fields. It not only can effectively help geological interpretation and analysis work, but also can it can help leveling up geosciences professional education. In this paper, an applet-based method was introduced for developing a web-based 3D geological information visualization system. The main aims of this paper are to explore a rapid and low-cost development method for constructing a web-based 3D geological system. First, the borehole data stored in Excel spreadsheets was extracted and then stored in SQLSERVER database of a web server. Second, the JDBC data access component was utilized for providing the capability of access the database. Third, the user interface was implemented with applet component embedded in JSP page and the 3D viewing and querying functions were implemented with PickCanvas of Java3D. Last, the borehole data acquired from geological survey were used for test the system, and the test results has shown that related methods of this paper have a certain application values.

  10. 3d visualization of atomistic simulations on every desktop

    NASA Astrophysics Data System (ADS)

    Peled, Dan; Silverman, Amihai; Adler, Joan

    2013-08-01

    Once upon a time, after making simulations, one had to go to a visualization center with fancy SGI machines to run a GL visualization and make a movie. More recently, OpenGL and its mesa clone have let us create 3D on simple desktops (or laptops), whether or not a Z-buffer card is present. Today, 3D a la Avatar is a commodity technique, presented in cinemas and sold for home TV. However, only a few special research centers have systems large enough for entire classes to view 3D, or special immersive facilities like visualization CAVEs or walls, and not everyone finds 3D immersion easy to view. For maximum physics with minimum effort a 3D system must come to each researcher and student. So how do we create 3D visualization cheaply on every desktop for atomistic simulations? After several months of attempts to select commodity equipment for a whole room system, we selected an approach that goes back a long time, even predating GL. The old concept of anaglyphic stereo relies on two images, slightly displaced, and viewed through colored glasses, or two squares of cellophane from a regular screen/projector or poster. We have added this capability to our AViz atomistic visualization code in its new, 6.1 version, which is RedHat, CentOS and Ubuntu compatible. Examples using data from our own research and that of other groups will be given.

  11. MPSalsa 3D Simulations of Chemically Reacting Flows

    DOE Data Explorer

    Many important scientific and engineering applications require a detailed analysis of complex systems with coupled fluid flow, thermal energy transfer, mass transfer and nonequilibrium chemical reactions. Currently, computer simulations of these complex reacting flow problems are limited to idealized systems in one or two spatial dimensions when coupled with a detailed, fundamental chemistry model. The goal of our research is to develop, analyze and implement advanced MP numerical algorithms that will allow high resolution 3D simulations with an equal emphasis on fluid flow and chemical kinetics modeling. In our research, we focus on the development of new, fully coupled, implicit solution strategies that are based on robust MP iterative solution methods (copied from http://www.cs.sandia.gov/CRF/MPSalsa/). These simulations are needed for scientific and technical areas such as: combustion research for transportation, atmospheric chemistry modeling for pollution studies, chemically reacting flow models for analysis and control of manufacturing processes, surface catalytic reactors for methane to methanol conversion and chemical vapor deposition (CVD) process modeling for production of advanced semiconductor materials (http://www.cs.sandia.gov/CRF/MPSalsa/).

    This project website provides six QuickTime videos of these simulations, along with a small image gallery and slideshow animations. A list of related publications and conference presentations is also made available.

  12. 3D Simulation Modeling of the Tooth Wear Process

    PubMed Central

    Dai, Ning; Hu, Jian; Liu, Hao

    2015-01-01

    Severe tooth wear is the most common non-caries dental disease, and it can seriously affect oral health. Studying the tooth wear process is time-consuming and difficult, and technological tools are frequently lacking. This paper presents a novel method of digital simulation modeling that represents a new way to study tooth wear. First, a feature extraction algorithm is used to obtain anatomical feature points of the tooth without attrition. Second, after the alignment of non-attrition areas, the initial homogeneous surface is generated by means of the RBF (Radial Basic Function) implicit surface and then deformed to the final homogeneous by the contraction and bounding algorithm. Finally, the method of bilinear interpolation based on Laplacian coordinates between tooth with attrition and without attrition is used to inversely reconstruct the sequence of changes of the 3D tooth morphology during gradual tooth wear process. This method can also be used to generate a process simulation of nonlinear tooth wear by means of fitting an attrition curve to the statistical data of attrition index in a certain region. The effectiveness and efficiency of the attrition simulation algorithm are verified through experimental simulation. PMID:26241942

  13. 3-D laser radar simulation for autonomous spacecraft landing

    NASA Technical Reports Server (NTRS)

    Reiley, Michael F.; Carmer, Dwayne C.; Pont, W. F.

    1991-01-01

    A sophisticated 3D laser radar sensor simulation, developed and applied to the task of autonomous hazard detection and avoidance, is presented. This simulation includes a backward ray trace to sensor subpixels, incoherent subpixel integration, range dependent noise, sensor point spread function effects, digitization noise, and AM-CW modulation. Specific sensor parameters, spacecraft lander trajectory, and terrain type have been selected to generate simulated sensor data.

  14. Using Averaging-Based Factorization to Compare Seismic Hazard Models Derived from 3D Earthquake Simulations with NGA Ground Motion Prediction Equations

    NASA Astrophysics Data System (ADS)

    Wang, F.; Jordan, T. H.

    2012-12-01

    Seismic hazard models based on empirical ground motion prediction equations (GMPEs) employ a model-based factorization to account for source, propagation, and path effects. An alternative is to simulate these effects directly using earthquake source models combined with three-dimensional (3D) models of Earth structure. We have developed an averaging-based factorization (ABF) scheme that facilitates the geographically explicit comparison of these two types of seismic hazard models. For any fault source k with epicentral position x, slip spatial and temporal distribution f, and moment magnitude m, we calculate the excitation functions G(s, k, x, m, f) for sites s in a geographical region R, such as 5% damped spectral acceleration at a particular period. Through a sequence of weighted-averaging and normalization operations following a certain hierarchy over f, m, x, k, and s, we uniquely factorize G(s, k, x, m, f) into six components: A, B(s), C(s, k), D(s, k, x), E(s, k, x, m), and F(s, k, x, m, f). Factors for a target model can be divided by those of a reference model to obtain six corresponding factor ratios, or residual factors: a, b(s), c(s, k), d(s, k, x), e(s, k, x, m), and f(s, k, x, m, f). We show that these residual factors characterize differences in basin effects primarily through b(s), distance scaling primarily through c(s, k), and source directivity primarily through d(s, k, x). We illustrate the ABF scheme by comparing CyberShake Hazard Model (CSHM) for the Los Angeles region (Graves et. al. 2010) with the Next Generation Attenuation (NGA) GMPEs modified according to the directivity relations of Spudich and Chiou (2008). Relative to CSHM, all NGA models underestimate the directivity and basin effects. In particular, the NGA models do not account for the coupling between source directivity and basin excitation that substantially enhance the low-frequency seismic hazards in the sedimentary basins of the Los Angeles region. Assuming Cyber

  15. The 3D visualization technology research of submarine pipeline based Horde3D GameEngine

    NASA Astrophysics Data System (ADS)

    Yao, Guanghui; Ma, Xiushui; Chen, Genlang; Ye, Lingjian

    2013-10-01

    With the development of 3D display and virtual reality technology, its application gets more and more widespread. This paper applies 3D display technology to the monitoring of submarine pipeline. We reconstruct the submarine pipeline and its surrounding submarine terrain in computer using Horde3D graphics rendering engine on the foundation database "submarine pipeline and relative landforms landscape synthesis database" so as to display the virtual scene of submarine pipeline based virtual reality and show the relevant data collected from the monitoring of submarine pipeline.

  16. VISRAD, 3-D Target Design and Radiation Simulation Code

    NASA Astrophysics Data System (ADS)

    Li, Yingjie; Macfarlane, Joseph; Golovkin, Igor

    2015-11-01

    The 3-D view factor code VISRAD is widely used in designing HEDP experiments at major laser and pulsed-power facilities, including NIF, OMEGA, OMEGA-EP, ORION, LMJ, Z, and PLX. It simulates target designs by generating a 3-D grid of surface elements, utilizing a variety of 3-D primitives and surface removal algorithms, and can be used to compute the radiation flux throughout the surface element grid by computing element-to-element view factors and solving power balance equations. Target set-up and beam pointing are facilitated by allowing users to specify positions and angular orientations using a variety of coordinates systems (e.g., that of any laser beam, target component, or diagnostic port). Analytic modeling for laser beam spatial profiles for OMEGA DPPs and NIF CPPs is used to compute laser intensity profiles throughout the grid of surface elements. We will discuss recent improvements to the software package and plans for future developments.

  17. STAR3D: a stack-based RNA 3D structural alignment tool

    PubMed Central

    Ge, Ping; Zhang, Shaojie

    2015-01-01

    The various roles of versatile non-coding RNAs typically require the attainment of complex high-order structures. Therefore, comparing the 3D structures of RNA molecules can yield in-depth understanding of their functional conservation and evolutionary history. Recently, many powerful tools have been developed to align RNA 3D structures. Although some methods rely on both backbone conformations and base pairing interactions, none of them consider the entire hierarchical formation of the RNA secondary structure. One of the major issues is that directly applying the algorithms of matching 2D structures to the 3D coordinates is particularly time-consuming. In this article, we propose a novel RNA 3D structural alignment tool, STAR3D, to take into full account the 2D relations between stacks without the complicated comparison of secondary structures. First, the 3D conserved stacks in the inputs are identified and then combined into a tree-like consensus. Afterward, the loop regions are compared one-to-one in accordance with their relative positions in the consensus tree. The experimental results show that the prediction of STAR3D is more accurate for both non-homologous and homologous RNAs than other state-of-the-art tools with shorter running time. PMID:26184875

  18. STAR3D: a stack-based RNA 3D structural alignment tool.

    PubMed

    Ge, Ping; Zhang, Shaojie

    2015-11-16

    The various roles of versatile non-coding RNAs typically require the attainment of complex high-order structures. Therefore, comparing the 3D structures of RNA molecules can yield in-depth understanding of their functional conservation and evolutionary history. Recently, many powerful tools have been developed to align RNA 3D structures. Although some methods rely on both backbone conformations and base pairing interactions, none of them consider the entire hierarchical formation of the RNA secondary structure. One of the major issues is that directly applying the algorithms of matching 2D structures to the 3D coordinates is particularly time-consuming. In this article, we propose a novel RNA 3D structural alignment tool, STAR3D, to take into full account the 2D relations between stacks without the complicated comparison of secondary structures. First, the 3D conserved stacks in the inputs are identified and then combined into a tree-like consensus. Afterward, the loop regions are compared one-to-one in accordance with their relative positions in the consensus tree. The experimental results show that the prediction of STAR3D is more accurate for both non-homologous and homologous RNAs than other state-of-the-art tools with shorter running time. PMID:26184875

  19. 3D mapping and simulation of Geneva Lake environmental data

    NASA Astrophysics Data System (ADS)

    Villard, Roch; Maignan, Michel; Kanevski, Mikhail; Rapin, Francois; Klein, Audrey

    2010-05-01

    The Geneva Lake is the biggest alpine and subalpine lake in central Europe. The depth of this lake is 309 meters and its total volume of water is 89 billions m3. It takes, on average, around twelve years so that waters of the lake are completely brewed. Furthermore the Geneva lake waters are rich in dissolved substances as carbonate, sulfate. The quantity of particles in suspension in the lake, which mainly arrived from the Rhône, is nowadays around height million of tones. The International Commission for the Leman Lake (CIPEL) works about the improvement of the quality of this lake since 1962. In the present study three dimensional environmental data (temperature, oxygen and nitrate) which cover the period from 1954 to 2008, for a total of 27'500 cases are investigated. We are interested to study the evolution of the temperature of the lake because there is an impact on the reproduction of fishes and also because the winter brewing of the water makes the re-oxygenation of deep-water. In order that biological balance is maintained in a lake, there must be enough oxygen in the water. Moreover, we work on nitrate distribution and evolution because contributions in fertilizers cause eutrophication of lake. The data are very numerous when we consider the time series, some of them with more than 300 occurrences, but there are between 2 and 15 data available for spatial cartography. The basic methodology used for the analysis, mapping and simulations of 3D patterns of environmental data is based on geostatistical predictions (family of kriging models) and conditional stochastic simulations. Spatial and temporal variability, 3D monitoring networks changing over time, make this study challenging. An important problem is also to make interpolation/simulations over a long period of time, like ten years. One way used to overcome this problem, consists in using a weighted average of ten variograms during this period. 3D mapping was carried out using environment data for

  20. Pattern based 3D image Steganography

    NASA Astrophysics Data System (ADS)

    Thiyagarajan, P.; Natarajan, V.; Aghila, G.; Prasanna Venkatesan, V.; Anitha, R.

    2013-03-01

    This paper proposes a new high capacity Steganographic scheme using 3D geometric models. The novel algorithm re-triangulates a part of a triangle mesh and embeds the secret information into newly added position of triangle meshes. Up to nine bits of secret data can be embedded into vertices of a triangle without causing any changes in the visual quality and the geometric properties of the cover image. Experimental results show that the proposed algorithm is secure, with high capacity and low distortion rate. Our algorithm also resists against uniform affine transformations such as cropping, rotation and scaling. Also, the performance of the method is compared with other existing 3D Steganography algorithms. [Figure not available: see fulltext.

  1. A 3D Sensor Based on a Profilometrical Approach

    PubMed Central

    Pedraza-Ortega, Jesús Carlos; Gorrostieta-Hurtado, Efren; Delgado-Rosas, Manuel; Canchola-Magdaleno, Sandra L.; Ramos-Arreguin, Juan Manuel; Aceves Fernandez, Marco A.; Sotomayor-Olmedo, Artemio

    2009-01-01

    An improved method which considers the use of Fourier and wavelet transform based analysis to infer and extract 3D information from an object by fringe projection on it is presented. This method requires a single image which contains a sinusoidal white light fringe pattern projected on it, and this pattern has a known spatial frequency and its information is used to avoid any discontinuities in the fringes with high frequency. Several computer simulations and experiments have been carried out to verify the analysis. The comparison between numerical simulations and experiments has proved the validity of this proposed method. PMID:22303176

  2. Fast 3D stereo flood simulations in urban areas

    NASA Astrophysics Data System (ADS)

    Hoes, O.; de Haan, G.; Stelling, G.; van Leeuwen, E.; van Dam, A.; Pleumeekers, O.; Schuurmans, W.

    2012-04-01

    Flood propagation models are essential to study floods as it is problematic to collect data during actual floods. Moreover, models are needed to explore the consequences of additional scenarios above the actual flood itself. The results of these model studies are generally graphs with water levels over time for certain locations or maps with the flood extent in an area for different return periods. A main difficulty with these depictions of flood information is that they do not reflect the seriousness of flood impacts well in terms of life-like human experience. Typically, one needs a (near) flood before measures are implemented. Apparently, a graph or map is not the proper material to convince politicians and policy makers, even if they live in the threatened area. The recent introduction of commercially available 3D stereo projectors and high resolution elevation data make it possible to build life-like visualizations of simulations. In our research we explored using 3D stereo, the recently collected elevation data of the Netherlands (20 laser points per m2!) in combination with aerial photographs, and a new fast 2D flood propagation calculation scheme. This scheme (under construction) is able to simulate floods using such high amounts of data points. The model simulates flood propagation on an irregular grid; at locations with large elevation differences (e.g. in urban areas) and fast flowing water, smaller cells are used compared to flat surfaces where the water is not or hardly flowing. The result of our combination is a very detailed flood simulation model that can be used to simulate floods within a fraction of the current calculation time. The opportunities of models and their results increase enormously with fast calculations and visualizations combined. For example, the model allows on the spot exploration of measures during a flood, with the 3D visualization ensuring that flood impacts become clear for decision makers. We will show the preliminary

  3. Metos3D: a marine ecosystem toolkit for optimization and simulation in 3-D - Simulation Package v0.2

    NASA Astrophysics Data System (ADS)

    Piwonski, J.; Slawig, T.

    2015-06-01

    A general programming interface for parameter identification for marine ecosystem models is introduced. A comprehensive solver software for periodic steady-states is implemented that includes a fixed point iteration (spin-up) and a Newton solver. The software is based on the Portable, Extensible Toolkit for Scientific Computation (PETSc) library and uses transport matrices for efficient off-line simulation in 3-D. In addition to the usage of PETSc's parallel data structures and PETSc's Newton solver, an own load balancing algorithm is implemented. A simple verification is carried out using a well investigated biogeochemical model for phosphate (PO4) and dissolved organic phosphorous (DOP) with 7 parameters. The model is coupled via the interface to transport matrices that correspond to a longitudinal and latitudinal resolution of 2.8125° and 15 vertical layers. Initial tests show that both solvers and the load balancing algorithm work correctly. Further experiments demonstrate the robustness of the Newton solver with respect to parameter variations. Moreover, the numerical tests reveal that, with optimal control settings, the Newton solver converges at least 6 times faster towards a solution than the spin-up. However, additional twin experiments reveal differences between both solvers regarding a derivative-based black-box optimization. Whereas an optimization run with spin-up-based model evaluations is capable to identify model parameters of a reference solution, Newton-based model evaluations result in an inaccurate gradient approximation.

  4. XFEM-Based CZM for the Simulation of 3D Multiple-Stage Hydraulic Fracturing in Quasi-brittle Shale Formations

    NASA Astrophysics Data System (ADS)

    Haddad, M.; Sepehrnoori, K.

    2015-12-01

    The Cohesive Zone Model (CZM) engages the plastic zone and softening effects at the fracture tip in a quasi-brittle rock, e.g. shale, which concludes a more precise fracture geometry and pumping pressure compared to those from Linear Elastic Fracture Mechanics. Nevertheless, this model, namely planar CZM, assumes a predefined surface on which the fractures propagate and therefore, restricts the fracture propagation direction. Notably, this direction depends on the stress interactions between closely spaced fractures and can be acquired integrating CZM as the segmental contact interaction model with a fully coupled pore pressure-displacement, extended finite element model (XFEM). This later model simulates the fracture initiation and propagation along an arbitrary, solution-dependent path. In this work, we modeled double- and triple-cluster 3D hydraulic fracturing in a single-layer, quasi-brittle shale formation using planar CZM and XFEM-based CZM including slit flow and poro-elasticity for fracture and matrix spaces, respectively, in Abaqus. Our fully-coupled pore pressure-stress Geomechanics model includes leak-off as a continuum-based fluid flow component coupled with the other unknowns in the problem. Having compared the triple-cluster fracturing results from planar CZM with those from XFEM-based CZM, we found that the stress shadowing effect of multiple hydraulic fractures on each other can cause these fractures to rationally propagate out of plane; this also demonstrates the advantages of the second method compared to the first one. We investigated the effect of this arbitrary propagation direction on not only the fractures' length, aperture, and the required injection pressure, but also fractures' connection to the wellbore. Depending on the spacing and the number of clusters per stage, this connection can be gradually disrupted with time due to the near-wellbore fracture closure which may embed proppant particles on the fracture wall, or screen out the

  5. Comparative visual analysis of 3D urban wind simulations

    NASA Astrophysics Data System (ADS)

    Röber, Niklas; Salim, Mohamed; Grawe, David; Leitl, Bernd; Böttinger, Michael; Schlünzen, Heinke

    2016-04-01

    Climate simulations are conducted in large quantity for a variety of different applications. Many of these simulations focus on global developments and study the Earth's climate system using a coupled atmosphere ocean model. Other simulations are performed on much smaller regional scales, to study very small fine grained climatic effects. These microscale climate simulations pose similar, yet also different, challenges for the visualization and the analysis of the simulation data. Modern interactive visualization and data analysis techniques are very powerful tools to assist the researcher in answering and communicating complex research questions. This presentation discusses comparative visualization for several different wind simulations, which were created using the microscale climate model MITRAS. The simulations differ in wind direction and speed, but are all centered on the same simulation domain: An area of Hamburg-Wilhelmsburg that hosted the IGA/IBA exhibition in 2013. The experiments contain a scenario case to analyze the effects of single buildings, as well as examine the impact of the Coriolis force within the simulation. The scenario case is additionally compared with real measurements from a wind tunnel experiment to ascertain the accuracy of the simulation and the model itself. We also compare different approaches for tree modeling and evaluate the stability of the model. In this presentation, we describe not only our workflow to efficiently and effectively visualize microscale climate simulation data using common 3D visualization and data analysis techniques, but also discuss how to compare variations of a simulation and how to highlight the subtle differences in between them. For the visualizations we use a range of different 3D tools that feature techniques for statistical data analysis, data selection, as well as linking and brushing.

  6. An efficient and robust 3D mesh compression based on 3D watermarking and wavelet transform

    NASA Astrophysics Data System (ADS)

    Zagrouba, Ezzeddine; Ben Jabra, Saoussen; Didi, Yosra

    2011-06-01

    The compression and watermarking of 3D meshes are very important in many areas of activity including digital cinematography, virtual reality as well as CAD design. However, most studies on 3D watermarking and 3D compression are done independently. To verify a good trade-off between protection and a fast transfer of 3D meshes, this paper proposes a new approach which combines 3D mesh compression with mesh watermarking. This combination is based on a wavelet transformation. In fact, the used compression method is decomposed to two stages: geometric encoding and topologic encoding. The proposed approach consists to insert a signature between these two stages. First, the wavelet transformation is applied to the original mesh to obtain two components: wavelets coefficients and a coarse mesh. Then, the geometric encoding is done on these two components. The obtained coarse mesh will be marked using a robust mesh watermarking scheme. This insertion into coarse mesh allows obtaining high robustness to several attacks. Finally, the topologic encoding is applied to the marked coarse mesh to obtain the compressed mesh. The combination of compression and watermarking permits to detect the presence of signature after a compression of the marked mesh. In plus, it allows transferring protected 3D meshes with the minimum size. The experiments and evaluations show that the proposed approach presents efficient results in terms of compression gain, invisibility and robustness of the signature against of many attacks.

  7. Simulation of Current Generation in a 3-D Plasma Model

    NASA Astrophysics Data System (ADS)

    Tsung, F. S.; Dawson, J. M.

    1996-11-01

    In the advanced tokamak regime, transport phenomena can account for a signficant fraction of the toroidal current, possibly over that driven directly by the ohmic heating electric fields. Bootstrap theory accounts for contributions of the collisional modification of banana orbits on the toroidal currents. In our previous simulations in 21/2-D, currents were spontaneously generated in both the cylindrical and the toroidal geometries, contrary to neoclassical predictions. In these calculations, it was believed that the driving mechanism is the preferential loss of particles whose initial velocity is opposite to that of the plasma current. We are extending these simulations to three dimensions. A parallel 3-D electromagnetic PIC code running on the IBM SP2, with a localized field-solver has been developed to investigate the effects of perturbations parallel to the field lines, and direct comparisons has been made between the 21/2-D and 3-D simulations and we have found good agreements between the 2 1/2-D calculations and the 3-D results. We will present our new results at the meeting. Research partially supported by NSF and DOE.

  8. 3-D Particle Simulation of Current Sheet Instabilities

    NASA Astrophysics Data System (ADS)

    Wang, Zhenyu; Lin, Yu; Wang, Xueyi; Tummel, Kurt; Chen, Liu

    2015-11-01

    The electrostatic (ES) and electromagnetic (EM) instabilities of a Harris current sheet are investigated using a 3-D linearized (δf) gyrokinetic (GK) electron and fully kinetic (FK) ion (GeFi) particle simulation code. The equilibrium magnetic field consists of an asymptotic anti-parallel Bx 0 and a guide field BG. The ES simulations show the excitation of lower-hybrid drift instability (LHDI) at the current sheet edge. The growth rate of the 3-D LHDI is scanned through the (kx ,ky) space. The most unstable modes are found to be at k∥ = 0 for smaller ky. As ky increases, the growth rate shows two peaks at k∥ ≠ 0 , consistent with analytical GK theory. The eigenmode structure and growth rate of LHDI obtained from the GeFi simulation agree well with those obtained from the FK PIC simulation. Decreasing BG, the asymptotic βe 0, or background density can destabilize the LHDI. In the EM simulation, tearing mode instability is dominant in the cases with ky kx , there exist two unstable modes: a kink-like (LHDI) mode at the current sheet edge and a sausage-like mode at the sheet center. The results are compared with the GK eigenmode theory and the FK simulation.

  9. Reconstruction and 3D visualisation based on objective real 3D based documentation.

    PubMed

    Bolliger, Michael J; Buck, Ursula; Thali, Michael J; Bolliger, Stephan A

    2012-09-01

    Reconstructions based directly upon forensic evidence alone are called primary information. Historically this consists of documentation of findings by verbal protocols, photographs and other visual means. Currently modern imaging techniques such as 3D surface scanning and radiological methods (computer tomography, magnetic resonance imaging) are also applied. Secondary interpretation is based on facts and the examiner's experience. Usually such reconstructive expertises are given in written form, and are often enhanced by sketches. However, narrative interpretations can, especially in complex courses of action, be difficult to present and can be misunderstood. In this report we demonstrate the use of graphic reconstruction of secondary interpretation with supporting pictorial evidence, applying digital visualisation (using 'Poser') or scientific animation (using '3D Studio Max', 'Maya') and present methods of clearly distinguishing between factual documentation and examiners' interpretation based on three cases. The first case involved a pedestrian who was initially struck by a car on a motorway and was then run over by a second car. The second case involved a suicidal gunshot to the head with a rifle, in which the trigger was pushed with a rod. The third case dealt with a collision between two motorcycles. Pictorial reconstruction of the secondary interpretation of these cases has several advantages. The images enable an immediate overview, give rise to enhanced clarity, and compel the examiner to look at all details if he or she is to create a complete image. PMID:21979427

  10. 3D simulation of the Cluster-Cluster Aggregation model

    NASA Astrophysics Data System (ADS)

    Li, Chao; Xiong, Hailing

    2014-12-01

    We write a program to implement the Cluster-Cluster Aggregation (CCA) model with java programming language. By using the simulation program, the fractal aggregation growth process can be displayed dynamically in the form of a three-dimensional (3D) figure. Meanwhile, the related kinetics data of aggregation simulation can be also recorded dynamically. Compared to the traditional programs, the program has better real-time performance and is more helpful to observe the fractal growth process, which contributes to the scientific study in fractal aggregation. Besides, because of adopting java programming language, the program has very good cross-platform performance.

  11. The Effects of 3D Computer Simulation on Biology Students' Achievement and Memory Retention

    ERIC Educational Resources Information Center

    Elangovan, Tavasuria; Ismail, Zurida

    2014-01-01

    A quasi experimental study was conducted for six weeks to determine the effectiveness of two different 3D computer simulation based teaching methods, that is, realistic simulation and non-realistic simulation on Form Four Biology students' achievement and memory retention in Perak, Malaysia. A sample of 136 Form Four Biology students in Perak,…

  12. Virtual environment display for a 3D audio room simulation

    NASA Technical Reports Server (NTRS)

    Chapin, William L.; Foster, Scott H.

    1992-01-01

    The development of a virtual environment simulation system integrating a 3D acoustic audio model with an immersive 3D visual scene is discussed. The system complements the acoustic model and is specified to: allow the listener to freely move about the space, a room of manipulable size, shape, and audio character, while interactively relocating the sound sources; reinforce the listener's feeling of telepresence in the acoustical environment with visual and proprioceptive sensations; enhance the audio with the graphic and interactive components, rather than overwhelm or reduce it; and serve as a research testbed and technology transfer demonstration. The hardware/software design of two demonstration systems, one installed and one portable, are discussed through the development of four iterative configurations.

  13. 3-D numerical simulations of volcanic ash transport and deposition

    NASA Astrophysics Data System (ADS)

    Suzuki, Y. J.; Koyaguchi, T.

    2012-12-01

    During an explosive volcanic eruption, volcanic gas and pyroclasts are ejected from the volcanic vent. The pyroclasts are carried up within a convective plume, advected by the surrounding wind field, and sediment on the ground depending on their terminal velocity. The fine ash are expected to have atmospheric residence, whereas the coarser particles form fall deposits. Accurate modeling of particle transport and deposition is of critical importance from the viewpoint of disaster prevention. Previously, some particle-tracking models (e.g., PUFF) and advection-diffusion models (e.g., TEPHRA2 and FALL3D) tried to forecast particle concentration in the atmosphere and particle loading at ground level. However, these models assumed source conditions (the grain-size distribution, plume height, and mass release location) based on the simple 1-D model of convective plume. In this study, we aim to develop a new 3-D model which reproduces both of the dynamics of convective plume and the ash transport. The model is designed to describe the injection of eruption cloud and marker particles from a circular vent above a flat surface into the stratified atmosphere. Because the advection is the predominant mechanism of particle transport near the volcano, the diffusive process is not taken into account in this model. The distribution of wind velocity is given as an initial condition. The model of the eruption cloud dynamics is based on the 3-D time-dependent model of Suzuki et al. (2005). We apply a pseudo-gas model to calculate the eruption cloud dynamics: the effect of particle separation on the cloud dynamics is not considered. In order to reproduce the drastic change of eruption cloud density, we change the effective gas constant and heat capacity of the mixture in the equation of state for ideal gases with the mixing ratio between the ejected material and entrained air. In order to calculate the location and movement of ash particles, the present model employs Lagrangian marker

  14. 3D simulations of multipacting in the 56 MHz SRF cavity

    SciTech Connect

    Wu Q.; Belomestnykh, S.; Ge, L.; Ko, K.; Li, Z.; Ng, C.; Xiao, L.

    2012-05-20

    The 56 MHz SRF Quarter-Wave Resonator (QWR) is designed for RHIC as a storage cavity to improve the collider performance. 2D multipacting simulation has been done for the cavity alone. Ripples were added to the outer body of the cavity for multipacting suppression based on the simulation findings. During operation, there will be four higher order mode (HOM) couplers. All of these components will be exposed to high RF fields. In this paper we compare 2D and 3D codes simulation results for multipacting in the cavity. We also report 3D simulation results for multipacting simulation at the couplers.

  15. Random-Profiles-Based 3D Face Recognition System

    PubMed Central

    Joongrock, Kim; Sunjin, Yu; Sangyoun, Lee

    2014-01-01

    In this paper, a noble nonintrusive three-dimensional (3D) face modeling system for random-profile-based 3D face recognition is presented. Although recent two-dimensional (2D) face recognition systems can achieve a reliable recognition rate under certain conditions, their performance is limited by internal and external changes, such as illumination and pose variation. To address these issues, 3D face recognition, which uses 3D face data, has recently received much attention. However, the performance of 3D face recognition highly depends on the precision of acquired 3D face data, while also requiring more computational power and storage capacity than 2D face recognition systems. In this paper, we present a developed nonintrusive 3D face modeling system composed of a stereo vision system and an invisible near-infrared line laser, which can be directly applied to profile-based 3D face recognition. We further propose a novel random-profile-based 3D face recognition method that is memory-efficient and pose-invariant. The experimental results demonstrate that the reconstructed 3D face data consists of more than 50 k 3D point clouds and a reliable recognition rate against pose variation. PMID:24691101

  16. MRI Volume Fusion Based on 3D Shearlet Decompositions.

    PubMed

    Duan, Chang; Wang, Shuai; Wang, Xue Gang; Huang, Qi Hong

    2014-01-01

    Nowadays many MRI scans can give 3D volume data with different contrasts, but the observers may want to view various contrasts in the same 3D volume. The conventional 2D medical fusion methods can only fuse the 3D volume data layer by layer, which may lead to the loss of interframe correlative information. In this paper, a novel 3D medical volume fusion method based on 3D band limited shearlet transform (3D BLST) is proposed. And this method is evaluated upon MRI T2* and quantitative susceptibility mapping data of 4 human brains. Both the perspective impression and the quality indices indicate that the proposed method has a better performance than conventional 2D wavelet, DT CWT, and 3D wavelet, DT CWT based fusion methods. PMID:24817880

  17. MRI Volume Fusion Based on 3D Shearlet Decompositions

    PubMed Central

    Duan, Chang; Wang, Shuai; Wang, Xue Gang; Huang, Qi Hong

    2014-01-01

    Nowadays many MRI scans can give 3D volume data with different contrasts, but the observers may want to view various contrasts in the same 3D volume. The conventional 2D medical fusion methods can only fuse the 3D volume data layer by layer, which may lead to the loss of interframe correlative information. In this paper, a novel 3D medical volume fusion method based on 3D band limited shearlet transform (3D BLST) is proposed. And this method is evaluated upon MRI T2* and quantitative susceptibility mapping data of 4 human brains. Both the perspective impression and the quality indices indicate that the proposed method has a better performance than conventional 2D wavelet, DT CWT, and 3D wavelet, DT CWT based fusion methods. PMID:24817880

  18. 3D-CANVENT: An interactive mine ventilation simulator

    SciTech Connect

    Hardcastle, S.G.

    1995-12-31

    3D-CANVENT is a software package that integrates advanced computer aided design (ACAD) true 3D graphics with a mine ventilation simulator. The package runs as a Windows{trademark} application to access its printer drivers environment and does not need third party CAD software. It is composed of two primary modules: DMVENT and MINEDESIGNER. DMVENT is a traditional Fortran coded Hardy-Cross iterative ventilation network solver written in 1980 with thermodynamic capabilities. This module is relatively unchanged with the traditional data input options for branch type, specified or calculated resistances, fixed flows, and fixed or variable pressure fans. MINEDESIGNER is the graphics engine that optimizes the ventilation design process. It performs the front-end transformation of input data entered in the graphical interface into the correct format for the solver. At the back-end it reconverts the historically standard tabular data output from the solver into an easily viewed graphical format. ACAD features of MINEDESIGNER are used to generate a 3D wire-frame node and branch network of the mine`s ventilation system. The network can be displayed in up to 4 views orientated to XYZ planes or a 3D view. AU the views have zoom, pan, slice and rotate options. The graphical interface efficiently permits data entry and editing via a mouse with pick-and-point item selection. Branches can be found or added with {open_quotes}search{close_quotes} and {open_quotes}join{close_quotes} options. Visual interpretation is enhanced by the 16 colour options for branches and numerous graphical attributes. Network locations are readily identified by alpha-numeric names for branches, junctions and fans, and also the logical numbering of junctions. The program is also readily expandable for pollutant simulation and control/monitoring applications.

  19. The impact of non-local buoyancy flux on the convective boundary layer development as simulated by a 3-D TKE-based subgrid mixing scheme in a mesoscale model

    NASA Astrophysics Data System (ADS)

    Zhang, Xu; Bao, Jian-Wen; Chen, Baode

    2016-04-01

    This presentation highlights a study in which a series of dry convective boundary layer (CBL) simulations are carried out using a generalized 3-dimensional (3-D) TKE-based parameterization scheme of sub-grid turbulent mixing in the Weather Research and Forecasting (WRF) model. The simulated characteristics of dry CBL are analyzed for the purpose of evaluating this scheme in comparison with a commonly-used scheme for sub-grid turbulent mixing in NWP models (i.e., the Mellor-Yamada 1.5-order TKE scheme). The same surface layer scheme is used in all the simulations so that only the sensitivity of the WRF model to different parameterizations of the sub-grid turbulent mixing above the surface layer is examined. The effect of horizontal grid resolution on the simulated CBL is also examined by running the model with grid sizes of 200, 400 m, 600 m, 1 km and 3 km. We will first compare the characteristics of the simulated CBL using the two schemes with the WRF LES dataset. We will then illustrate the importance of including the non-local component in the vertical buoyancy specification in the 3-D TKE-based scheme. Finally, comparing the results from the simulations against coarse-grained WRF LES dataset, we will show the feasibility and advantage of replacing conventional planetary boundary layer parameterization schemes with a scale-aware 3-D TKE-based scheme in the WRF model.

  20. Using Delft3D to Simulate Current Energy Conversion

    NASA Astrophysics Data System (ADS)

    James, S. C.; Chartrand, C.; Roberts, J.

    2015-12-01

    As public concern with renewable energy increases, current energy conversion (CEC) technology is being developed to optimize energy output and minimize environmental impact. CEC turbines generate energy from tidal and current systems and create wakes that interact with turbines located downstream of a device. The placement of devices can greatly influence power generation and structural reliability. CECs can also alter the ecosystem process surrounding the turbines, such as flow regimes, sediment dynamics, and water quality. Software is needed to investigate specific CEC sites to simulate power generation and hydrodynamic responses of a flow through a CEC turbine array. This work validates Delft3D against several flume experiments by simulating the power generation and hydrodynamic response of flow through a turbine or actuator disc(s). Model parameters are then calibrated against these data sets to reproduce momentum removal and wake recovery data with 3-D flow simulations. Simulated wake profiles and turbulence intensities compare favorably to the experimental data and demonstrate the utility and accuracy of a fast-running tool for future siting and analysis of CEC arrays in complex domains.

  1. 3-D Quantum Transport Solver Based on the Perfectly Matched Layer and Spectral Element Methods for the Simulation of Semiconductor Nanodevices

    PubMed Central

    Cheng, Candong; Lee, Joon-Ho; Lim, Kim Hwa; Massoud, Hisham Z.; Liu, Qing Huo

    2007-01-01

    A 3-D quantum transport solver based on the spectral element method (SEM) and perfectly matched layer (PML) is introduced to solve the 3-D Schrödinger equation with a tensor effective mass. In this solver, the influence of the environment is replaced with the artificial PML open boundary extended beyond the contact regions of the device. These contact regions are treated as waveguides with known incident waves from waveguide mode solutions. As the transmitted wave function is treated as a total wave, there is no need to decompose it into waveguide modes, thus significantly simplifying the problem in comparison with conventional open boundary conditions. The spectral element method leads to an exponentially improving accuracy with the increase in the polynomial order and sampling points. The PML region can be designed such that less than −100 dB outgoing waves are reflected by this artificial material. The computational efficiency of the SEM solver is demonstrated by comparing the numerical and analytical results from waveguide and plane-wave examples, and its utility is illustrated by multiple-terminal devices and semiconductor nanotube devices. PMID:18037971

  2. Development of a 3D particle treecode for plasma simulations

    NASA Astrophysics Data System (ADS)

    Ong, Benjamin; Christlieb, Andrew; Krasny, Robert

    2008-11-01

    In this work we present a fully 3-D Boundary Integral Treecode (BIT). We apply the method to several classic problems such as sheath formation and 3D simulations of a Penning trap. In addition, we investigate the ability of the solver to naturally capture Coloumb scattering. A key point in the investigation is to understand the effect of different types of regularizations, and how to appropriately incorporate the regularization in the BIT framework. This work builds on substantial efforts in 1- and 2-D. [1] R. Krasny and K. Lindsay, A particle method and adaptive treecode for vortex sheet motion in 3-D flow, JCP, Vol. 172, No. 2, 879-907 [2] K. Matyash, R. Schneider, R. Sydora, and F. Taccogna, Application of a Grid-Free Kinetic Model to the Collisionless Sheath, Contrib. Plasma Phys, Vol. 48, No. 1-3, 116-120 (2008) [3] K. Cartwright and A. Christlieb, Boundary Integral Corrected Particle in Cell, SIAM Journal on Sci. Comput., submitted [4] A. Christlieb, R. Krasny, B. Ong and J. Qiu, A Step Towards Addressing Temporal Multi-scale Problems in Plasma Physics, in prep.

  3. Prediction of Residual Stress Distributions in Welded Sections of P92 Pipes with Small Diameter and Thick Wall based on 3D Finite Element Simulation

    NASA Astrophysics Data System (ADS)

    Wang, Xiaowei; Gong, Jianming; Zhao, Yanping; Wang, Yanfei

    2015-05-01

    This study used ABAQUS finite element (FE) software to investigate the residual stress distributions of P92 welded pipes in both the as-weld and post weld heat treated (PWHT) condition. Sequential coupling quasi-static thermo-mechanical in conjunction with moving double ellipsoidal heat source and an element add/remove technique to simulate deposition of new weld material, are combined in the 3D FE analysis. To validate the simulation results, the residual stresses in axial direction at the surface of pipe were measured by X-ray diffraction technique and compared with the results of FE analysis. Detailed characteristic distributions of the residual stresses are discussed. Results show that the FE model can predict the residual stress distributions satisfactorily. Highest residual stresses on the outer surface are found in the last weld bead to be deposited. And the highest tensile residual stress for the full welded section take place in heat affected zone (HAZ) near the middle thickness. Larger residual sstress can be found around the welding start point along the pipe circumference. Comparison of heat treated specimen and untreated specimen illustrates that PWHT has a strong effect on the residual stress field.

  4. Eutectic morphology evolution and Sr-modification in Al-Si based alloys studied by 3D phase-field simulation coupled to Calphad data

    NASA Astrophysics Data System (ADS)

    Eiken, J.; Apel, M.

    2015-06-01

    The mechanical properties of Al-Si cast alloys are mainly controlled by the morphology of the eutectic silicon. Phase-field simulations were carried out to study the evolution of the multidimensional branched eutectic structures in 3D. Coupling to a Calphad database provided thermodynamic data for the multicomponent multiphase Al-Si-Sr-P system. A major challenge was to model the effect of the trace element Sr. Minor amounts of Sr are known to modify the silicon morphology from coarse flakes to fine coral-like fibers. However, the underlying mechanisms are still not fully understood. Two different in literature most discussed mechanisms were modelled: a) an effect of Sr on the growth kinetics of eutectic silicon and b) the formation of Al2Si2Sr on AlP particles, which consumes most potent nucleation sites and forces eutectic silicon to form with lower frequency and higher undercooling. The phase-field simulations only revealed a successful modification of the eutectic morphology when both effects acted in combination. Only in this case a clear depression of the eutectic temperature was observed. The required phase formation sequence L → fcc-(Al) → AlP → Al2Si2Sr → (Si) determines critical values for the Sr and P content.

  5. 3D simulation of plant and living tissue superficial lesions

    NASA Astrophysics Data System (ADS)

    Bratchenko, Ivan A.; Sindyaeva, Alexandra R.; Zakharov, Valery P.

    2008-06-01

    The analytic schemes of calculated absorbed and scattered radiation spatial distribution in multilayer plant and living tissues and diagnostic of their physical state are presented. The correct realization of these tasks was obtained with 3D Monte Carlo simulation of optical radiation propagation through multiple scattering medium in TracePro environment. Analysis of simulation data was made by differential backscattering method, which allows to investigate general backscattered radiation dependences on optical and geometrical parameters of living tissue. It was shown that obtained results formed the basis for developing an algorithm of optical superficial inhomogeneous registration and spatial localization. Such diagnosis can be executed in tissues of any arbitrary surface structure. Designed scheme is intended to utilize in contactless macro diagnostics device. The same approach was used for simulation of optical spectra of healthy and diseased virtual leaves for plant tissue pathological changes revealing.

  6. 3-D simulations of solar and stellar convection and magnetoconvection

    NASA Astrophysics Data System (ADS)

    Nordlund, Å.; Stein, R. F.

    1990-05-01

    We present the key components of a 3-D code designed for simulating the hydrodynamics and magnetohydrodynamics of stellar atmospheres and envelopes. Some particular properties of the code are: (1) the ability to handle strong stratification (extensive simulations with bottom/top pressure ratios of 3×104 have been performed, and simulations with pressure ratios of 5×106 are being initiated); (2) a detailed treatment of the radiating surface; (3) a functional form of the subgrid-scale diffusion designed to minimize the influence on resolved motions; (4) boundary conditions open to flows. The top boundary allows the transmission of short period waves, while the bottom boundary condition was designed to enforce a displacement node for radial pressure modes.

  7. Unstructured 3D grid toolbox for modeling and simulation

    SciTech Connect

    George, D.

    1997-11-01

    Computable 3D grids that accurately represent complex multimaterial geometries are essential for both static and time-dependent modeling and simulation. LaGriT, the grid toolbox developed at Los Alamos provides a sophisticated set of initial grid generation, grid maintenance and grid optimization tools. We present example grids that demonstrate the flexibility of the grid generator. Additionally, we present the results of an electrostatic calculation and a grain growth problem that illustrate the grid optimization features and the utility of the grid server architecture.

  8. 3D multiple-point statistics simulation using 2D training images

    NASA Astrophysics Data System (ADS)

    Comunian, A.; Renard, P.; Straubhaar, J.

    2012-03-01

    One of the main issues in the application of multiple-point statistics (MPS) to the simulation of three-dimensional (3D) blocks is the lack of a suitable 3D training image. In this work, we compare three methods of overcoming this issue using information coming from bidimensional (2D) training images. One approach is based on the aggregation of probabilities. The other approaches are novel. One relies on merging the lists obtained using the impala algorithm from diverse 2D training images, creating a list of compatible data events that is then used for the MPS simulation. The other (s2Dcd) is based on sequential simulations of 2D slices constrained by the conditioning data computed at the previous simulation steps. These three methods are tested on the reproduction of two 3D images that are used as references, and on a real case study where two training images of sedimentary structures are considered. The tests show that it is possible to obtain 3D MPS simulations with at least two 2D training images. The simulations obtained, in particular those obtained with the s2Dcd method, are close to the references, according to a number of comparison criteria. The CPU time required to simulate with the method s2Dcd is from two to four orders of magnitude smaller than the one required by a MPS simulation performed using a 3D training image, while the results obtained are comparable. This computational efficiency and the possibility of using MPS for 3D simulation without the need for a 3D training image facilitates the inclusion of MPS in Monte Carlo, uncertainty evaluation, and stochastic inverse problems frameworks.

  9. Inclined nanoimprinting lithography-based 3D nanofabrication

    NASA Astrophysics Data System (ADS)

    Liu, Zhan; Bucknall, David G.; Allen, Mark G.

    2011-06-01

    We report a 'top-down' 3D nanofabrication approach combining non-conventional inclined nanoimprint lithography (INIL) with reactive ion etching (RIE), contact molding and 3D metal nanotransfer printing (nTP). This integration of processes enables the production and conformal transfer of 3D polymer nanostructures of varying heights to a variety of other materials including a silicon-based substrate, a silicone stamp and a metal gold (Au) thin film. The process demonstrates the potential of reduced fabrication cost and complexity compared to existing methods. Various 3D nanostructures in technologically useful materials have been fabricated, including symmetric and asymmetric nanolines, nanocircles and nanosquares. Such 3D nanostructures have potential applications such as angle-resolved photonic crystals, plasmonic crystals and biomimicking anisotropic surfaces. This integrated INIL-based strategy shows great promise for 3D nanofabrication in the fields of photonics, plasmonics and surface tribology.

  10. 3D FEM Simulation of Flank Wear in Turning

    NASA Astrophysics Data System (ADS)

    Attanasio, Aldo; Ceretti, Elisabetta; Giardini, Claudio

    2011-05-01

    This work deals with tool wear simulation. Studying the influence of tool wear on tool life, tool substitution policy and influence on final part quality, surface integrity, cutting forces and power consumption it is important to reduce the global process costs. Adhesion, abrasion, erosion, diffusion, corrosion and fracture are some of the phenomena responsible of the tool wear depending on the selected cutting parameters: cutting velocity, feed rate, depth of cut, …. In some cases these wear mechanisms are described by analytical models as a function of process variables (temperature, pressure and sliding velocity along the cutting surface). These analytical models are suitable to be implemented in FEM codes and they can be utilized to simulate the tool wear. In the present paper a commercial 3D FEM software has been customized to simulate the tool wear during turning operations when cutting AISI 1045 carbon steel with uncoated tungsten carbide tip. The FEM software was improved by means of a suitable subroutine able to modify the tool geometry on the basis of the estimated tool wear as the simulation goes on. Since for the considered couple of tool-workpiece material the main phenomena generating wear are the abrasive and the diffusive ones, the tool wear model implemented into the subroutine was obtained as combination between the Usui's and the Takeyama and Murata's models. A comparison between experimental and simulated flank tool wear curves is reported demonstrating that it is possible to simulate the tool wear development.

  11. Simulation of 3D Global Wave Propagation Through Geodynamic Models

    NASA Astrophysics Data System (ADS)

    Schuberth, B.; Piazzoni, A.; Bunge, H.; Igel, H.; Steinle-Neumann, G.

    2005-12-01

    This project aims at a better understanding of the forward problem of global 3D wave propagation. We use the spectral element program "SPECFEM3D" (Komatitsch and Tromp, 2002a,b) with varying input models of seismic velocities derived from mantle convection simulations (Bunge et al., 2002). The purpose of this approach is to obtain seismic velocity models independently from seismological studies. In this way one can test the effects of varying parameters of the mantle convection models on the seismic wave field. In order to obtain the seismic velocities from the temperature field of the geodynamical simulations we follow a mineral physics approach. Assuming a certain mantle composition (e.g. pyrolite with CMASF composition) we compute the stable phases for each depth (i.e. pressure) and temperature by system Gibbs free energy minimization. Elastic moduli and density are calculated from the equations of state of the stable mineral phases. For this we use a mineral physics database derived from calorimetric experiments (enthalphy and entropy of formation, heat capacity) and EOS parameters.

  12. Code System to Simulate 3D Tracer Dispersion in Atmosphere.

    2002-01-25

    Version 00 SHREDI is a shielding code system which executes removal-diffusion computations for bi-dimensional shields in r-z or x-y geometries. It may also deal with monodimensional problems (infinitely high cylinders or slabs). MESYST can simulate 3D tracer dispersion in the atmosphere. Three programs are part of this system: CRE_TOPO prepares the terrain data for MESYST. NOABL calculates three-dimensional free divergence windfields over complex terrain. PAS computes tracer concentrations and depositions on a given domain. Themore » purpose of this work is to develop a reliable simulation tool for pollutant atmospheric dispersion, which gives a realistic approach and allows one to compute the pollutant concentrations over complex terrains with good accuracy. The factional brownian model, which furnishes more accurate concentration values, is introduced to calculate pollutant atmospheric dispersion. The model was validated on SIESTA international experiments.« less

  13. GBS: Global 3D simulation of tokamak edge region

    NASA Astrophysics Data System (ADS)

    Zhu, Ben; Fisher, Dustin; Rogers, Barrett; Ricci, Paolo

    2012-10-01

    A 3D two-fluid global code, namely Global Braginskii Solver (GBS), is being developed to explore the physics of turbulent transport, confinement, self-consistent profile formation, pedestal scaling and related phenomena in the edge region of tokamaks. Aimed at solving drift-reduced Braginskii equations [1] in complex magnetic geometry, the GBS is used for turbulence simulation in SOL region. In the recent upgrade, the simulation domain is expanded into close flux region with twist-shift boundary conditions. Hence, the new GBS code is able to explore global transport physics in an annular full-torus domain from the top of the pedestal into the far SOL. We are in the process of identifying and analyzing the linear and nonlinear instabilities in the system using the new GBS code. Preliminary results will be presented and compared with other codes if possible.[4pt] [1] A. Zeiler, J. F. Drake and B. Rogers, Phys. Plasmas 4, 2134 (1997)

  14. Method and simulation to study 3D crosstalk perception

    NASA Astrophysics Data System (ADS)

    Khaustova, Dar'ya; Blondé, Laurent; Huynh-Thu, Quan; Vienne, Cyril; Doyen, Didier

    2012-03-01

    To various degrees, all modern 3DTV displays suffer from crosstalk, which can lead to a decrease of both visual quality and visual comfort, and also affect perception of depth. In the absence of a perfect 3D display technology, crosstalk has to be taken into account when studying perception of 3D stereoscopic content. In order to improve 3D presentation systems and understand how to efficiently eliminate crosstalk, it is necessary to understand its impact on human perception. In this paper, we present a practical method to study the perception of crosstalk. The approach consists of four steps: (1) physical measurements of a 3DTV, (2) building of a crosstalk surface based on those measurements and representing specifically the behavior of that 3TV, (3) manipulation of the crosstalk function and application on reference images to produce test images degraded by crosstalk in various ways, and (4) psychophysical tests. Our approach allows both a realistic representation of the behavior of a 3DTV and the easy manipulation of its resulting crosstalk in order to conduct psycho-visual experiments. Our approach can be used in all studies requiring the understanding of how crosstalk affects perception of stereoscopic content and how it can be corrected efficiently.

  15. Simulated Photoevaporative Mass Loss from Hot Jupiters in 3D

    NASA Astrophysics Data System (ADS)

    Tripathi, Anjali; Kratter, Kaitlin M.; Murray-Clay, Ruth A.; Krumholz, Mark R.

    2015-08-01

    Ionizing stellar photons heat the upper regions of planetary atmospheres, driving atmospheric mass loss. Gas escaping from several hot, hydrogen-rich planets has been detected using UV and X-ray transmission spectroscopy. Because these planets are tidally locked, and thus asymmetrically irradiated, escaping gas is unlikely to be spherically symmetric. In this paper, we focus on the effects of asymmetric heating on local outflow structure. We use the Athena code for hydrodynamics to produce 3D simulations of hot Jupiter mass loss that jointly model wind launching and stellar heating via photoionization. Our fiducial planet is an inflated, hot Jupiter with radius {R}{{p}}=2.14{R}{Jup} and mass {M}{{p}}=0.53{M}{Jup}. We irradiate the initially neutral, atomic hydrogen atmosphere with 13.6 eV photons and compute the outflow’s ionization structure. There are clear asymmetries in the atmospheric outflow, including a neutral shadow on the planet’s nightside. Given an incident ionizing UV flux comparable to that of the Sun, we find a steady-state mass loss rate of ˜ 2× {10}10 g s-1. The total mass loss rate and the outflow substructure along the substellar ray show good agreement with earlier 1D models, for two different fluxes. Our 3D data cube can be used to generate the outflow’s extinction spectrum during transit. As a proof of concept, we find absorption of stellar Lyα at Doppler-shifted velocities of up to ±50 km s-1. Our work provides a starting point for further 3D models that can be used to predict observable signatures of hot Jupiter mass loss.

  16. 3D ladar ATR based on recognition by parts

    NASA Astrophysics Data System (ADS)

    Sobel, Erik; Douglas, Joel; Ettinger, Gil

    2003-09-01

    LADAR imaging is unique in its potential to accurately measure the 3D surface geometry of targets. We exploit this 3D geometry to perform automatic target recognition on targets in the domain of military and civilian ground vehicles. Here we present a robust model based 3D LADAR ATR system which efficiently searches through target hypothesis space by reasoning hierarchically from vehicle parts up to identification of a whole vehicle with specific pose and articulation state. The LADAR data consists of one or more 3D point clouds generated by laser returns from ground vehicles viewed from multiple sensor locations. The key to this approach is an automated 3D registration process to precisely align and match multiple data views to model based predictions of observed LADAR data. We accomplish this registration using robust 3D surface alignment techniques which we have also used successfully in 3D medical image analysis applications. The registration routine seeks to minimize a robust 3D surface distance metric to recover the best six-degree-of-freedom pose and fit. We process the observed LADAR data by first extracting salient parts, matching these parts to model based predictions and hierarchically constructing and testing increasingly detailed hypotheses about the identity of the observed target. This cycle of prediction, extraction, and matching efficiently partitions the target hypothesis space based on the distinctive anatomy of the target models and achieves effective recognition by progressing logically from a target's constituent parts up to its complete pose and articulation state.

  17. 3D Wavelet-Based Filter and Method

    DOEpatents

    Moss, William C.; Haase, Sebastian; Sedat, John W.

    2008-08-12

    A 3D wavelet-based filter for visualizing and locating structural features of a user-specified linear size in 2D or 3D image data. The only input parameter is a characteristic linear size of the feature of interest, and the filter output contains only those regions that are correlated with the characteristic size, thus denoising the image.

  18. Study, simulation and design of a 3D clinostat

    NASA Astrophysics Data System (ADS)

    Pavone, Valentina; Guarnieri, Vincenzo; Lobascio, Cesare; Soma, Aurelio; Bosso, Nicola; Lamantea, Matteo Maria

    High cost and limited number of physically executable experiments in space have introduced the need for ground simulation systems that enable preparing experiments to be carried out on board, identifying phenomena associated with the altered gravity conditions, and taking advantage of these conditions, as in Biotechnology. Among systems developed to simulate microgravity, especially for life sciences experiments, different types of clinostats were realized. This work deals with mechanical design of a three-dimensional clinostat and simulation of the dynamic behavior of the system by varying the operating parameters. The design and simulation phase was preceded by a careful analysis of the state of art and by the review of the most recent results, in particular from the major investigators of Life Sciences in Space. The mechanical design is quite innovative by adoption of a structure entirely in aluminum, which allows robustness while reducing the overall weight. The transmission system of motion has been optimized by means of brushless DC micro motors, light and compact, which helped to reduce weight, dimensions, power consumption and increase the reliability and durability of the system. The study of the dynamic behavior using SIMPACK, a multibody simulation software, led to results in line with those found in the most important and recent scientific publications. This model was also appropriately configured to represent any desired operating condition, and for eventual system scalability. It would be interesting to generate simulated hypogravity - e.g.: 0.38-g (Mars) or 0.17-g (Moon). This would allow to investigate how terrestrial life forms can grow in other planetary habitats, or to determine the gravity threshold response of different organisms. At the moment, such a system can only be achieved by centrifuges in real microgravity. We are confident that simulation and associated tests with our 3D clinostat can help adjusting the parameters allowing variable g

  19. Image based 3D city modeling : Comparative study

    NASA Astrophysics Data System (ADS)

    Singh, S. P.; Jain, K.; Mandla, V. R.

    2014-06-01

    3D city model is a digital representation of the Earth's surface and it's related objects such as building, tree, vegetation, and some manmade feature belonging to urban area. The demand of 3D city modeling is increasing rapidly for various engineering and non-engineering applications. Generally four main image based approaches were used for virtual 3D city models generation. In first approach, researchers were used Sketch based modeling, second method is Procedural grammar based modeling, third approach is Close range photogrammetry based modeling and fourth approach is mainly based on Computer Vision techniques. SketchUp, CityEngine, Photomodeler and Agisoft Photoscan are the main softwares to represent these approaches respectively. These softwares have different approaches & methods suitable for image based 3D city modeling. Literature study shows that till date, there is no complete such type of comparative study available to create complete 3D city model by using images. This paper gives a comparative assessment of these four image based 3D modeling approaches. This comparative study is mainly based on data acquisition methods, data processing techniques and output 3D model products. For this research work, study area is the campus of civil engineering department, Indian Institute of Technology, Roorkee (India). This 3D campus acts as a prototype for city. This study also explains various governing parameters, factors and work experiences. This research work also gives a brief introduction, strengths and weakness of these four image based techniques. Some personal comment is also given as what can do or what can't do from these softwares. At the last, this study shows; it concluded that, each and every software has some advantages and limitations. Choice of software depends on user requirements of 3D project. For normal visualization project, SketchUp software is a good option. For 3D documentation record, Photomodeler gives good result. For Large city

  20. NoSQL Based 3D City Model Management System

    NASA Astrophysics Data System (ADS)

    Mao, B.; Harrie, L.; Cao, J.; Wu, Z.; Shen, J.

    2014-04-01

    To manage increasingly complicated 3D city models, a framework based on NoSQL database is proposed in this paper. The framework supports import and export of 3D city model according to international standards such as CityGML, KML/COLLADA and X3D. We also suggest and implement 3D model analysis and visualization in the framework. For city model analysis, 3D geometry data and semantic information (such as name, height, area, price and so on) are stored and processed separately. We use a Map-Reduce method to deal with the 3D geometry data since it is more complex, while the semantic analysis is mainly based on database query operation. For visualization, a multiple 3D city representation structure CityTree is implemented within the framework to support dynamic LODs based on user viewpoint. Also, the proposed framework is easily extensible and supports geoindexes to speed up the querying. Our experimental results show that the proposed 3D city management system can efficiently fulfil the analysis and visualization requirements.

  1. 3D simulations of an electrostatic quadrupole injector

    SciTech Connect

    Grote, D.P. |; Friedman, A.; Yu, S.

    1993-02-01

    Analysis of the dynamics of a space charge dominated beam in a lattice of electrostatic focusing structures requires a full three-dimensional conic that includes self-consistent space charge fields and the fields from the complex conductor shapes. The existing WARP3d code, a particle simulation code which has been developed for heavy-ion fusion (HIF) applications contains machinery for handling particles in three-dimensional fields. A successive overrelaxation field solver with subgrid-scale placement of boundaries for rounded surface and four-fold symmetry has been added to the code. The electrostatic quadrupole (ESQ) injector for the ILSE accelerator facility being planned at Lawrence Berkeley Laboratory is shown as an application. The issue of concern is possible emittance degradation because the focusing voltages are a significant fraction of the particles` energy and because there are significant nonlinear fields arising from the shapes of the quadrupole structures.

  2. Colossal Tooling Design: 3D Simulation for Ergonomic Analysis

    NASA Technical Reports Server (NTRS)

    Hunter, Steve L.; Dischinger, Charles; Thomas, Robert E.; Babai, Majid

    2003-01-01

    The application of high-level 3D simulation software to the design phase of colossal mandrel tooling for composite aerospace fuel tanks was accomplished to discover and resolve safety and human engineering problems. The analyses were conducted to determine safety, ergonomic and human engineering aspects of the disassembly process of the fuel tank composite shell mandrel. Three-dimensional graphics high-level software, incorporating various ergonomic analysis algorithms, was utilized to determine if the process was within safety and health boundaries for the workers carrying out these tasks. In addition, the graphical software was extremely helpful in the identification of material handling equipment and devices for the mandrel tooling assembly/disassembly process.

  3. 3D Simulations of Supernovae into the Young Remnant Phase

    NASA Astrophysics Data System (ADS)

    Ellinger, Carola I.; Young, P. A.; Fryer, C.; Rockefeller, G.; Park, S.

    2013-01-01

    The explosion of massive stars as core-collapse supernovae is an inherently three dimensional phenomenon. Observations of the young, ejecta dominated remnants of those explosions unambiguously demonstrate that asymmetry on large and small scales is the rule, rather than the exception. Numerical models of supernova remnants connect the observed remnants to models of the exploding stellar system and thus facilitate both improved interpretations of the observations as well as improve our understanding of the explosion mechanism. We present first 3D simulations of core- collapse supernovae evolving into supernova remnants calculated with SNSPH. The calculations were started from 1D collapsed models of 2 progenitor stars of different types, and follow the explosion from revival of the shock wave to shock break out in 3D. Two different interstellar media, a cold neutral medium and a dense molecular cloud, as well as a red supergiant stellar wind profile, were added to the explosion calculations shortly before shock breakout, so that the blast wave stays in the simulation. With this setup we can follow the dispersal of the nucleosynthesis products from the explosion into the Sedov stage of the supernova remnant evolution starting from realistic initial conditions for the supernova ejecta. We will present a first investigation in the mixing between stellar and interstellar matter as the supernova evolves into the young supernova remnant phase, and contrasts differences that are observed between the scenarios that are investigated. One of the goals is to distinguish between features that arose in instabilities during the explosion from those that were created in the interaction with the surrounding medium.

  4. Realistic terrain visualization based on 3D virtual world technology

    NASA Astrophysics Data System (ADS)

    Huang, Fengru; Lin, Hui; Chen, Bin; Xiao, Cai

    2010-11-01

    The rapid advances in information technologies, e.g., network, graphics processing, and virtual world, have provided challenges and opportunities for new capabilities in information systems, Internet applications, and virtual geographic environments, especially geographic visualization and collaboration. In order to achieve meaningful geographic capabilities, we need to explore and understand how these technologies can be used to construct virtual geographic environments to help to engage geographic research. The generation of three-dimensional (3D) terrain plays an important part in geographical visualization, computer simulation, and virtual geographic environment applications. The paper introduces concepts and technologies of virtual worlds and virtual geographic environments, explores integration of realistic terrain and other geographic objects and phenomena of natural geographic environment based on SL/OpenSim virtual world technologies. Realistic 3D terrain visualization is a foundation of construction of a mirror world or a sand box model of the earth landscape and geographic environment. The capabilities of interaction and collaboration on geographic information are discussed as well. Further virtual geographic applications can be developed based on the foundation work of realistic terrain visualization in virtual environments.

  5. Realistic terrain visualization based on 3D virtual world technology

    NASA Astrophysics Data System (ADS)

    Huang, Fengru; Lin, Hui; Chen, Bin; Xiao, Cai

    2009-09-01

    The rapid advances in information technologies, e.g., network, graphics processing, and virtual world, have provided challenges and opportunities for new capabilities in information systems, Internet applications, and virtual geographic environments, especially geographic visualization and collaboration. In order to achieve meaningful geographic capabilities, we need to explore and understand how these technologies can be used to construct virtual geographic environments to help to engage geographic research. The generation of three-dimensional (3D) terrain plays an important part in geographical visualization, computer simulation, and virtual geographic environment applications. The paper introduces concepts and technologies of virtual worlds and virtual geographic environments, explores integration of realistic terrain and other geographic objects and phenomena of natural geographic environment based on SL/OpenSim virtual world technologies. Realistic 3D terrain visualization is a foundation of construction of a mirror world or a sand box model of the earth landscape and geographic environment. The capabilities of interaction and collaboration on geographic information are discussed as well. Further virtual geographic applications can be developed based on the foundation work of realistic terrain visualization in virtual environments.

  6. 3D Simulation of External Flooding Events for the RISMC Pathway

    SciTech Connect

    Prescott, Steven; Mandelli, Diego; Sampath, Ramprasad; Smith, Curtis; Lin, Linyu

    2015-09-01

    Incorporating 3D simulations as part of the Risk-Informed Safety Margins Characterization (RISMIC) Toolkit allows analysts to obtain a more complete picture of complex system behavior for events including external plant hazards. External events such as flooding have become more important recently – however these can be analyzed with existing and validated simulated physics toolkits. In this report, we describe these approaches specific to flooding-based analysis using an approach called Smoothed Particle Hydrodynamics. The theory, validation, and example applications of the 3D flooding simulation are described. Integrating these 3D simulation methods into computational risk analysis provides a spatial/visual aspect to the design, improves the realism of results, and can prove visual understanding to validate the analysis of flooding.

  7. PAB3D Simulations for the CAWAPI F-16XL

    NASA Technical Reports Server (NTRS)

    Elmiligui, Alaa; Abdol-Hamid, K. S.; Massey, Steven J.

    2007-01-01

    Numerical simulations of the flow around F-16XL are performed as a contribution to the Cranked Arrow Wing Aerodynamic Project International (CAWAPI) using the PAB3D CFD code. Two turbulence models are used in the calculations: a standard k-! model, and the Shih-Zhu-Lumley (SZL) algebraic stress model. Seven flight conditions are simulated for the flow around the F-16XL where the free stream Mach number varies from 0.242 to 0.97. The range of angles of attack varies from 0deg to 20deg. Computational results, surface static pressure, boundary layer velocity profiles, and skin friction are presented and compared with flight data. Numerical results are generally in good agreement with flight data, considering that only one grid resolution is utilized for the different flight conditions simulated in this study. The ASM results are closer to the flight data than the k-! model results. The ASM predicted a stronger primary vortex, however, the origin of the vortex and footprint is approximately the same as in the k-! predictions.

  8. 3D implicit PIC simulations of solar wind - moon interactions

    NASA Astrophysics Data System (ADS)

    Deca, J.; Markidis, S.; Divin, A.; Lapenta, G.; Vapirev, A.

    2012-04-01

    We present three-dimensional Particle-in-Cell simulations of an unmagnetized insulating Moon-sized body immersed in the solar wind. The simulations are performed using the implicit electromagnetic Particle-in-Cell code iPIC3D [Markidis, 2009]. Multiscale kinetic physics is resolved for all plasma components (heavy ions, protons and electrons) in the code, recently updated with a set of open boundary conditions designed for solar wind - body interaction studies. Particles are injected at the inflow side of the computational domain and absorbed at all others. A bow shock is not formed upstream of the body, but the obstacle generates faint dispersive waves propagating parallel to the magnetic field lines, in agreement with numerical simulations done in MHD approach. Polarization electric field is generated in the wake. In addition, plasma flows filling the wake tend to excite streaming instabilities, which lead to bipolar signatures in the parallel electric field. Our future work includes updating the physical model to include photoionization and re-emission at the object's surface.

  9. 3D Dynamic Earthquake Fracture Simulation (Test Case)

    NASA Astrophysics Data System (ADS)

    Korkusuz Öztürk, Yasemin; Meral Özel, Nurcan; Ando, Ryosuke

    2016-04-01

    A 3D dynamic earthquake fracture simulation is being developed for the fault structures which are non-planar to understand heterogeneous stress states in the Marmara Sea. Locating in a seismic gap, a large earthquake is expected in the center of the Sea of Marmara. Concerning the fact that more than 14 million inhabitants of İstanbul, located very closely to the Marmara Sea, the importance of the analysis of the Central Marmara Sea is extremely high. A few 3D dynamic earthquake fracture studies have been already done in the Sea of Marmara for pure right lateral strike-slip stress regimes (Oglesby and Mai, 2012; Aochi and Ulrich, 2015). In this study, a 3D dynamic earthquake fracture model with heterogeneous stress patches from the TPV5, a SCEC code validation case, is adapted. In this test model, the fault and the ground surfaces are gridded by a scalene triangulation technique using GMSH program. For a grid size changing between 0.616 km and 1.050 km the number of elements for the fault surface is 1984 and for the ground surface is 1216. When these results are compared with Kaneko's results for TPV5 from SPECFEM3D, reliable findings could be observed for the first 6.5 seconds (stations on the fault) although a stability problem is encountered after this time threshold. To solve this problem grid sizes are made smaller, so the number of elements increase 7986 for the fault surface and 4867 for the ground surface. On the other hand, computational problems arise in that case, since the computation time is directly proportional to the number of total elements and the required memory also increases with the square of that. Therefore, it is expected that this method can be adapted for less coarse grid cases, regarding the main difficulty coming from the necessity of an effective supercomputer and run time limitations. The main objective of this research is to obtain 3D dynamic earthquake rupture scenarios, concerning not only planar and non-planar faults but also

  10. Stem dependence on stiffness in 3D RNA simulation using SimRNA

    NASA Astrophysics Data System (ADS)

    Dawson, Wayne; Boniecki, Michal; Bujnicki, Janusz

    2015-03-01

    SimRNA is a recently developed de novo 3D structure prediction program in our laboratory that uses the Monte Carlo method to search the conformation space of RNA using knowledge based energy functions. In developing the 3D model, we have also be exploring the larger physical questions about what generates differences in Kuhn length (a measure of stiffness) in biopolymers. In previoius work, this was shown to depend on the stem length and to be a function of the length and Young's modulus. A complete theoretical model was of the entropy changes due to the freezing out of degrees of freedom was developed base on this model. In this study, we find that this is further supported in the development of the 3D statitstical potentials for actual 3D simulations of RNA.

  11. 3D reconstruction based on CT image and its application

    NASA Astrophysics Data System (ADS)

    Zhang, Jianxun; Zhang, Mingmin

    2004-03-01

    Reconstitute the 3-D model of the liver and its internal piping system and simulation of the liver surgical operation can increase the accurate and security of the liver surgical operation, attain a purpose for the biggest limit decrease surgical operation wound, shortening surgical operation time, increasing surgical operation succeeding rate, reducing medical treatment expenses and promoting patient recovering from illness. This text expatiated technology and method that the author constitutes 3-D the model of the liver and its internal piping system and simulation of the liver surgical operation according to the images of CT. The direct volume rendering method establishes 3D the model of the liver. Under the environment of OPENGL adopt method of space point rendering to display liver's internal piping system and simulation of the liver surgical operation. Finally, we adopt the wavelet transform method compressed the medical image data.

  12. Recognition technology research based on 3D fingerprint

    NASA Astrophysics Data System (ADS)

    Tian, Qianxiao; Huang, Shujun; Zhang, Zonghua

    2014-11-01

    Fingerprint has been widely studied and applied to personal recognition in both forensics and civilian. However, the current widespread used fingerprint is identified by 2D (two-dimensional) fingerprint image and the mapping from 3D (three-dimensional) to 2D loses 1D information, which leads to low accurate and even wrong recognition. This paper presents a 3D fingerprint recognition method based on the fringe projection technique. A series of fringe patterns generated by software are projected onto a finger surface through a projecting system. From another viewpoint, the fringe patterns are deformed by the finger surface and captured by a CCD camera. The deformed fringe pattern images give the 3D shape data of the finger and the 3D fingerprint features. Through converting the 3D fingerprints to 2D space, traditional 2D fingerprint recognition method can be used to 3D fingerprints recognition. Experimental results on measuring and recognizing some 3D fingerprints show the accuracy and availability of the developed 3D fingerprint system.

  13. Reconstruction of eruption column model based on the 3D numerical simulation of volcanic plume for 2011 Shinmoe-dake eruption

    NASA Astrophysics Data System (ADS)

    Hashimoto, A.; Suzuki, Y.; Shimbori, T.; Ishii, K.; Takagi, A.

    2014-12-01

    The result of volcanic ash transport simulation strongly depends on an eruption column model, that gives a profile of discharging rate of ash particles, for a predictability of dispersion of ash particles. Simple eruption column models, such as proposed by Suzuki (1983), have been adopted in volcanic ash transport simulations for its simplicity and convenience. However, such a model sometimes brings erroneous results especially when an environmental wind field considerably affects the behavior of eruption column. The distortion of eruption column and enhancement of turbulent mixing due to wind shear should be taken into account in an eruption column model for the improvement of its applicability. The authors have conducted the three-dimensional simulation of volcanic plume for the 2011 Shinmoe-dake eruption, assuming the vertically-sheared wind field actually observed in the event, and have taken statistics of the locations and mobile vectors of the ash particles getting out of the simulated volcanic plume to establish the profile of discharging rate. The resulted profile is distinctly different from that based on a usual eruption column model. The new profile is characterized by the relatively large discharge of micron-sized ash particles from the middle level of the plume, comparing to the usual one. The authors plan to validate the new model in the simulation of long-range transport of volcanic ash, based on satellite observation data. This work will be a basis for a future improvement of the volcanic ash fall forecast by Japan Meteorological Agency, which is established with the Suzuki's model. The characteristics and validity of new model will be discussed in the presentation. Acknowledgement This study was supported by the Earthquake Research Institute cooperative research program. References Suzuki, T., 1983: A theoretical model for dispersion of tephra. Arc Volcanism: Physics and Tectonics. TERRAPUB, 95-113.

  14. Simulation of underwater explosion benchmark experiments with ALE3D

    SciTech Connect

    Couch, R.; Faux, D.

    1997-05-19

    Some code improvements have been made during the course of this study. One immediately obvious need was for more flexibility in the constitutive representation for materials in shell elements. To remedy this situation, a model with a tabular representation of stress versus strain and rate dependent effects was implemented. This was required in order to obtain reasonable results in the IED cylinder simulation. Another deficiency was in the ability to extract and plot variables associated with shell elements. The pipe whip analysis required the development of a scheme to tally and plot time dependent shell quantities such as stresses and strains. This capability had previously existed only for solid elements. Work was initiated to provide the same range of plotting capability for structural elements that exist with the DYNA3D/TAURUS tools. One of the characteristics of these problems is the disparity in zoning required in the vicinity of the charge and bubble compared to that needed in the far field. This disparity can cause the equipotential relaxation logic to provide a less than optimal solution. Various approaches were utilized to bias the relaxation to obtain more optimal meshing during relaxation. Extensions of these techniques have been developed to provide more powerful options, but more work still needs to be done. The results presented here are representative of what can be produced with an ALE code structured like ALE3D. They are not necessarily the best results that could have been obtained. More experience in assessing sensitivities to meshing and boundary conditions would be very useful. A number of code deficiencies discovered in the course of this work have been corrected and are available for any future investigations.

  15. Virtual environment display for a 3D audio room simulation

    NASA Astrophysics Data System (ADS)

    Chapin, William L.; Foster, Scott

    1992-06-01

    Recent developments in virtual 3D audio and synthetic aural environments have produced a complex acoustical room simulation. The acoustical simulation models a room with walls, ceiling, and floor of selected sound reflecting/absorbing characteristics and unlimited independent localizable sound sources. This non-visual acoustic simulation, implemented with 4 audio ConvolvotronsTM by Crystal River Engineering and coupled to the listener with a Poihemus IsotrakTM, tracking the listener's head position and orientation, and stereo headphones returning binaural sound, is quite compelling to most listeners with eyes closed. This immersive effect should be reinforced when properly integrated into a full, multi-sensory virtual environment presentation. This paper discusses the design of an interactive, visual virtual environment, complementing the acoustic model and specified to: 1) allow the listener to freely move about the space, a room of manipulable size, shape, and audio character, while interactively relocating the sound sources; 2) reinforce the listener's feeling of telepresence into the acoustical environment with visual and proprioceptive sensations; 3) enhance the audio with the graphic and interactive components, rather than overwhelm or reduce it; and 4) serve as a research testbed and technology transfer demonstration. The hardware/software design of two demonstration systems, one installed and one portable, are discussed through the development of four iterative configurations. The installed system implements a head-coupled, wide-angle, stereo-optic tracker/viewer and multi-computer simulation control. The portable demonstration system implements a head-mounted wide-angle, stereo-optic display, separate head and pointer electro-magnetic position trackers, a heterogeneous parallel graphics processing system, and object oriented C++ program code.

  16. 3-D Relativistic MHD Simulations of Extragalactic Jets

    NASA Astrophysics Data System (ADS)

    Nishikawa, K.-I.; Koide, S.; Sakai, J.-I.; Frank, J.; Christodoulou, D. M.; Sol, H.; Mutel, R. L.

    1997-12-01

    We present the numerical simulations of relativistic jets propagating initially oblique to the field lines of a magnetized ambient medium. Our simulations incorporate relativistic MHD in a four-dimensional spacetime and clearly show that (a) relatively weak, oblique fields (at 1/16 of the equipartition value) have only a negligible influence on the propagating jet and they are passively pushed away by the relativistically moving head; (b) oblique fields in equipartition with the ambient plasma provide more resistance and cause bending at the jet head, but the magnitude of this deflection and the associated backflow are small compared to those identified by previous studies with a 2-D slab model. The new results are understood as follows: Relativistic simulations have consistently shown that these jets are effectively heavy and so they do not suffer substantial momentum losses and are not decelerated as efficiently as their nonrelativistic counterparts. In addition, the ambient magnetic field, however strong, can be pushed aside with relative ease by the beam, provided that the degrees of freedom associated with all three spatial dimensions are followed self-consistently during the simulations. The effect is analogous to pushing Japanese ``noren'' or vertical Venetian blinds out of the way while the slats are allowed to bend in 3-D space rather than as a 2-D slab structure. Applied to relativistic extragalactic jets from blazars, the new results are encouraging since superluminal outflows exhibit bending near their sources and their environments are profoundly magnetized---but observations do not provide support for irregular kinematics such as large-scale vortical motions and pronounced reverse flows near the points of origin.

  17. First 3-D simulations of meteor plasma dynamics and turbulence

    NASA Astrophysics Data System (ADS)

    Oppenheim, Meers M.; Dimant, Yakov S.

    2015-02-01

    Millions of small but detectable meteors hit the Earth's atmosphere every second, creating trails of hot plasma that turbulently diffuse into the background atmosphere. For over 60 years, radars have detected meteor plasmas and used these signals to infer characteristics of the meteoroid population and upper atmosphere, but, despite the importance of meteor radar measurements, the complex processes by which these plasmas evolve have never been thoroughly explained or modeled. In this paper, we present the first fully 3-D simulations of meteor evolution, showing meteor plasmas developing instabilities, becoming turbulent, and inhomogeneously diffusing into the background ionosphere. These instabilities explain the characteristics and strength of many radar observations, in particular the high-resolution nonspecular echoes made by large radars. The simulations reveal how meteors create strong electric fields that dig out deep plasma channels along the Earth's magnetic fields. They also allow researchers to explore the impacts of the intense winds and wind shears, commonly found at these altitudes, on meteor plasma evolution. This study will allow the development of more sophisticated models of meteor radar signals, enabling the extraction of detailed information about the properties of meteoroid particles and the atmosphere.

  18. Gis-Based Smart Cartography Using 3d Modeling

    NASA Astrophysics Data System (ADS)

    Malinverni, E. S.; Tassetti, A. N.

    2013-08-01

    3D City Models have evolved to be important tools for urban decision processes and information systems, especially in planning, simulation, analysis, documentation and heritage management. On the other hand existing and in use numerical cartography is often not suitable to be used in GIS because not geometrically and topologically correctly structured. The research aim is to 3D structure and organize a numeric cartography for GIS and turn it into CityGML standardized features. The work is framed around a first phase of methodological analysis aimed to underline which existing standard (like ISO and OGC rules) can be used to improve the quality requirement of a cartographic structure. Subsequently, from this technical specifics, it has been investigated the translation in formal contents, using an owner interchange software (SketchUp), to support some guide lines implementations to generate a GIS3D structured in GML3. It has been therefore predisposed a test three-dimensional numerical cartography (scale 1:500, generated from range data captured by 3D laser scanner), tested on its quality according to the previous standard and edited when and where necessary. Cad files and shapefiles are converted into a final 3D model (Google SketchUp model) and then exported into a 3D city model (CityGML LoD1/LoD2). The GIS3D structure has been managed in a GIS environment to run further spatial analysis and energy performance estimate, not achievable in a 2D environment. In particular geometrical building parameters (footprint, volume etc.) are computed and building envelop thermal characteristics are derived from. Lastly, a simulation is carried out to deal with asbestos and home renovating charges and show how the built 3D city model can support municipal managers with risk diagnosis of the present situation and development of strategies for a sustainable redevelop.

  19. MODELING HIGH-ENERGY LIGHT CURVES OF THE PSR B1259-63/LS 2883 BINARY BASED ON 3D SPH SIMULATIONS

    SciTech Connect

    Takata, J.; Okazaki, A. T.; Nagataki, S.; Lee, S.-H.; Naito, T.; Kawachi, A.; Mori, M.; Hayasaki, K.; Yamaguchi, M. S.; Owocki, S. P.

    2012-05-01

    Temporal changes of X-ray to very high energy gamma-ray emissions from the pulsar-Be-star binary PSR B1259-63/LS 2883 are studied based on three-dimensional smoothed particle hydrodynamic simulations of pulsar wind interaction with Be-disk and wind. We focus on the periastron passage of the binary and calculate the variation of the synchrotron and inverse-Compton emissions using the simulated shock geometry and pressure distribution of the pulsar wind. The characteristic double-peaked X-ray light curve from observations is reproduced by our simulation under a dense Be-disk condition (base density {approx}10{sup -9} g cm{sup -3}). We interpret the pre- and post-periastron peaks as being due to a significant increase in the conversion efficiency from pulsar spin-down power to the shock-accelerated particle energy at orbital phases when the pulsar crosses the disk before periastron passage, and when the pulsar wind creates a cavity in the disk gas after periastron passage, respectively. On the contrary, in the model TeV light curve, which also shows a double-peak feature, the first peak appears around the periastron phase. The possible effects of cooling processes on the TeV light curve are briefly discussed.

  20. 3D radiative transfer in colliding wind binaries: Application of the SimpleX algorithm to 3D SPH simulations

    NASA Astrophysics Data System (ADS)

    Madura, Thomas; Clementel, Nicola; Kruip, Chael; Icke, Vincent; Gull, Theodore

    2014-09-01

    We present the first results of full 3D radiative transfer simulations of the colliding stellar winds in a massive binary system. We accomplish this by applying the SIMPLEX algorithm for 3D radiative transfer on an unstructured Delaunay grid to recent 3D smoothed particle hydrodynamics (SPH) simulations of the colliding winds in the binary system η Carinae. We use SIMPLEX to obtain detailed ionization fractions of hydrogen and helium, in 3D, at the resolution of the original SPH simulations. We show how the SIMPLEX simulations can be used to generate synthetic spectral data cubes for comparison to data obtained with the Hubble Space Telescope (HST)/Space Telescope Imaging Spectrograph as part of a multi-cycle program to map changes in η Car's extended interacting wind structures across one binary cycle. Comparison of the HST observations to the SIMPLEX models can help lead to more accurate constraints on the orbital, stellar, and wind parameters of the η Car system, such as the primary's mass-loss rate and the companion's temperature and luminosity. While we initially focus specifically on the η Car binary, the numerical methods employed can be applied to numerous other colliding wind (WR140, WR137, WR19) and dusty 'pinwheel' (WR104, WR98a) binary systems. One of the biggest remaining mysteries is how dust can form and survive in such systems that contain a hot, luminous O star. Coupled with 3D hydrodynamical simulations, SIMPLEX simulations have the potential to help determine the regions where dust can form and survive in these unique objects.

  1. 3D two-fluid simulations of turbulence in LAPD

    NASA Astrophysics Data System (ADS)

    Fisher, Dustin M.

    The Large Plasma Device (LAPD) is modeled using a modified version of the 3D Global Braginskii Solver code (GBS) for a nominal Helium plasma. The unbiased low-flow regime is explored in simulations where there is an intrinsic E x B rotation of the plasma. In the simulations this rotation is caused primarily by sheath effects with the Reynolds stress and J x B torque due to a cross-field Pederson conductivity having little effect. Explicit biasing simulations are also explored for the first time where the intrinsic rotation of the plasma is modified through boundary conditions that mimic the biasable limiter used in LAPD. Comparisons to experimental measurements in the unbiased case show strong qualitative agreement with the data, particularly the radial dependence of the density fluctuations, cross-correlation lengths, radial flux dependence outside of the cathode edge, and camera imagery. Kelvin Helmholtz (KH) turbulence at relatively large scales is the dominant driver of cross-field transport in these simulations with smaller-scale drift waves and sheath modes playing a secondary role. Plasma holes and blobs arising from KH vortices are consistent with the scale sizes and overall appearance of those in LAPD camera images. The addition of ion-neutral collisions in the unbiased simulations at previously theorized values reduces the radial particle flux due to a modest stabilizing contribution of the collisions on the KH-modes driving the turbulent transport. In the biased runs the ion-neutral collisions have a much smaller effect due to the modification of the potential from sheath terms. In biasing the plasma to increase the intrinsic rotation, simulations show the emergence of a nonlinearly saturated coherent mode of order m = 6. In addition, the plasma inside of the cathode edge becomes quiescent due to the strong influence of the wall bias in setting up the equilibrium plasma potential. Biasing in the direction opposite to the intrinsic flow reduces the

  2. 3D face recognition based on matching of facial surfaces

    NASA Astrophysics Data System (ADS)

    Echeagaray-Patrón, Beatriz A.; Kober, Vitaly

    2015-09-01

    Face recognition is an important task in pattern recognition and computer vision. In this work a method for 3D face recognition in the presence of facial expression and poses variations is proposed. The method uses 3D shape data without color or texture information. A new matching algorithm based on conformal mapping of original facial surfaces onto a Riemannian manifold followed by comparison of conformal and isometric invariants computed in the manifold is suggested. Experimental results are presented using common 3D face databases that contain significant amount of expression and pose variations.

  3. Powder-based 3D printing for bone tissue engineering.

    PubMed

    Brunello, G; Sivolella, S; Meneghello, R; Ferroni, L; Gardin, C; Piattelli, A; Zavan, B; Bressan, E

    2016-01-01

    Bone tissue engineered 3-D constructs customized to patient-specific needs are emerging as attractive biomimetic scaffolds to enhance bone cell and tissue growth and differentiation. The article outlines the features of the most common additive manufacturing technologies (3D printing, stereolithography, fused deposition modeling, and selective laser sintering) used to fabricate bone tissue engineering scaffolds. It concentrates, in particular, on the current state of knowledge concerning powder-based 3D printing, including a description of the properties of powders and binder solutions, the critical phases of scaffold manufacturing, and its applications in bone tissue engineering. Clinical aspects and future applications are also discussed. PMID:27086202

  4. A Primitive-Based 3D Object Recognition System

    NASA Astrophysics Data System (ADS)

    Dhawan, Atam P.

    1988-08-01

    A knowledge-based 3D object recognition system has been developed. The system uses the hierarchical structural, geometrical and relational knowledge in matching the 3D object models to the image data through pre-defined primitives. The primitives, we have selected, to begin with, are 3D boxes, cylinders, and spheres. These primitives as viewed from different angles covering complete 3D rotation range are stored in a "Primitive-Viewing Knowledge-Base" in form of hierarchical structural and relational graphs. The knowledge-based system then hypothesizes about the viewing angle and decomposes the segmented image data into valid primitives. A rough 3D structural and relational description is made on the basis of recognized 3D primitives. This description is now used in the detailed high-level frame-based structural and relational matching. The system has several expert and knowledge-based systems working in both stand-alone and cooperative modes to provide multi-level processing. This multi-level processing utilizes both bottom-up (data-driven) and top-down (model-driven) approaches in order to acquire sufficient knowledge to accept or reject any hypothesis for matching or recognizing the objects in the given image.

  5. 3D face recognition based on a modified ICP method

    NASA Astrophysics Data System (ADS)

    Zhao, Kankan; Xi, Jiangtao; Yu, Yanguang; Chicharo, Joe F.

    2011-11-01

    3D face recognition technique has gained much more attention recently, and it is widely used in security system, identification system, and access control system, etc. The core technique in 3D face recognition is to find out the corresponding points in different 3D face images. The classic partial Iterative Closest Point (ICP) method is iteratively align the two point sets based on repetitively calculate the closest points as the corresponding points in each iteration. After several iterations, the corresponding points can be obtained accurately. However, if two 3D face images with different scale are from the same person, the classic partial ICP does not work. In this paper we propose a modified partial Iterative Closest Point (ICP) method in which the scaling effect is considered to achieve 3D face recognition. We design a 3x3 diagonal matrix as the scale matrix in each iteration of the classic partial ICP. The probing face image which is multiplied by the scale matrix will keep the similar scale with the reference face image. Therefore, we can accurately determine the corresponding points even the scales of probing image and reference image are different. 3D face images in our experiments are acquired by a 3D data acquisition system based on Digital Fringe Projection Profilometry (DFPP). A 3D database consists of 30 group images, three images with the same scale, which are from the same person with different views, are included in each group. And in different groups, the scale of the 3 images may be different from other groups. The experiment results show that our proposed method can achieve 3D face recognition, especially in the case that the scales of probing image and referent image are different.

  6. Qualitative Assessment of a 3D Simulation Program: Faculty, Students, and Bio-Organic Reaction Animations

    ERIC Educational Resources Information Center

    Günersel, Adalet B.; Fleming, Steven A.

    2013-01-01

    Research shows that computer-based simulations and animations are especially helpful in fields such as chemistry where concepts are abstract and cannot be directly observed. Bio-Organic Reaction Animations (BioORA) is a freely available 3D visualization software program developed to help students understand the chemistry of biomolecular events.…

  7. Two new methods for simulating photolithography development in 3D

    SciTech Connect

    Helmsen, J.; Colella, P.; Dorr, M.; Puckett, E.G.

    1997-01-30

    Two methods are presented for simulating the development of photolithographic profiles during the resist dissolution phase. These algorithms are the volume-of-fluid algorithm, and the steady level-set algorithm. They are compared with the ray-trace, cell, and level-set techniques employed in SAMPLE-3D. The volume-of-fluid algorithm employs an Euclidean Grid with volume fractions. At each time step, the surface is reconstructed by computing an approximation of the tangent plane of the surface in each cell that contains a value between 0 and 1. The geometry constructed in this manner is used to determine flow velocity vectors and the flux across each edge. The material is then advanced by a split advection scheme. The steady Level Set algorithm is an extension of the Iterative Level Set algorithm. The steady Level Set algorithm combines Fast Level Set concepts and a technique for finding zero residual solutions to the ( ) function. The etch time for each cell is calculated in a time ordered manner. Use of heap sorting data structures allows the algorithm to execute extremely quickly. Comparisons of the methods have been performed and results shown.

  8. Simulations of soluble surfactants in 3D multiphase flow

    NASA Astrophysics Data System (ADS)

    Muradoglu, Metin; Tryggvason, Gretar

    2014-10-01

    A finite-difference/front-tracking method is developed for simulations of soluble surfactants in 3D multiphase flows. The interfacial and bulk surfactant concentration evolution equations are solved fully coupled with the incompressible Navier-Stokes equations. A non-linear equation of state is used to relate interfacial surface tension to surfactant concentration at the interface. Simple test cases are designed to validate different parts of the numerical algorithm and the computational results are found to be in a good agreement with the analytical solutions. The numerical algorithm is parallelized using a domain-decomposition method. It is then applied to study the effects of soluble surfactants on the motion of buoyancy-driven bubbles in a straight square channel in nearly undeformable (spherical) and deformable (ellipsoidal) regimes. Finally the method is used to examine the effects of soluble surfactants on the lateral migration of bubbles in a pressure-driven channel flow. It is found that surfactant-induced Marangoni stresses counteract the shear-induced lift force and can reverse the lateral bubble migration completely, i.e., the contaminated bubble drifts away from the channel wall and stabilizes at the center of the channel when the surfactant-induced Marangoni stresses are sufficiently large.

  9. 3-D simulation of posterior fossa reduction in Chiari I.

    PubMed

    Fernandes, Yvens Barbosa; Perestrelo, Pedro Fábio Mendonça; Noritomi, Pedro Yoshito; Mathias, Roger Neves; Silva, Jorge Vicente Lopes da; Joaquim, Andrei Fernandes

    2016-05-01

    We proposed a 3D model to evaluate the role of platybasia and clivus length in the development of Chiari I (CI). Using a computer aided design software, two DICOM files of a normal CT scan and MR were used to simulate different clivus lengths (CL) and also different basal angles (BA). The final posterior fossa volume (PFV) was obtained for each variation and the percentage of the volumetric change was acquired with the same method. The initial normal values of CL and BA were 35.65 mm and 112.66º respectively, with a total PFV of 209 ml. Ranging the CL from 34.65 to 29.65 - 24.65 - 19.65, there was a PFV decrease of 0.47% - 1.12% - 1.69%, respectively. Ranging the BA from 122.66º to 127.66º - 142.66º, the PFV decreased 0.69% - 3.23%, respectively. Our model highlights the importance of the basal angle and clivus length to the development of CI. PMID:27191237

  10. 3D finite element simulation of TIG weld pool

    NASA Astrophysics Data System (ADS)

    Kong, X.; Asserin, O.; Gounand, S.; Gilles, P.; Bergheau, J. M.; Medale, M.

    2012-07-01

    The aim of this paper is to propose a three-dimensional weld pool model for the moving gas tungsten arc welding (GTAW) process, in order to understand the main factors that limit the weld quality and improve the productivity, especially with respect to the welding speed. Simulation is a very powerful tool to help in understanding the physical phenomena in the weld process. A 3D finite element model of heat and fluid flow in weld pool considering free surface of the pool and traveling speed has been developed for the GTAW process. Cast3M software is used to compute all the governing equations. The free surface of the weld pool is calculated by minimizing the total surface energy. The combined effects of surface tension gradient, buoyancy force, arc pressure, arc drag force to drive the fluid flow is included in our model. The deformation of the weld pool surface and the welding speed affect fluid flow, heat flow and thus temperature gradients and molten pool dimensions. Welding trials study is presented to compare our numerical results with macrograph of the molten pool.

  11. 3-D Numerical Simulation and Analysis of Complex Fiber Geometry RaFC Materials with High Volume Fraction and High Aspect Ratio based on ABAQUS PYTHON

    NASA Astrophysics Data System (ADS)

    Jin, BoCheng

    2011-12-01

    Organic and inorganic fiber reinforced composites with innumerable fiber orientation distributions and fiber geometries are abundantly available in several natural and synthetic structures. Inorganic glass fiber composites have been introduced to numerous applications due to their economical fabrication and tailored structural properties. Numerical characterization of such composite material systems is necessitated due to their intrinsic statistical nature, which renders extensive experimentation prohibitively time consuming and costly. To predict various mechanical behavior and characterizations of Uni-Directional Fiber Composites (UDFC) and Random Fiber Composites (RaFC), we numerically developed Representative Volume Elements (RVE) with high accuracy and efficiency and with complex fiber geometric representations encountered in uni-directional and random fiber networks. In this thesis, the numerical simulations of unidirectional RaFC fiber strand RVE models (VF>70%) are first presented by programming in ABAQUS PYTHON. Secondly, when the cross sectional aspect ratios (AR) of the second phase fiber inclusions are not necessarily one, various types of RVE models with different cross sectional shape fibers are simulated and discussed. A modified random sequential absorption algorithm is applied to enhance the volume fraction number (VF) of the RVE, which the mechanical properties represents the composite material. Thirdly, based on a Spatial Segment Shortest Distance (SSSD) algorithm, a 3-Dimentional RaFC material RVE model is simulated in ABAQUS PYTHON with randomly oriented and distributed straight fibers of high fiber aspect ratio (AR=100:1) and volume fraction (VF=31.8%). Fourthly, the piecewise multi-segments fiber geometry is obtained in MATLAB environment by a modified SSSD algorithm. Finally, numerical methods including the polynomial curve fitting and piecewise quadratic and cubic B-spline interpolation are applied to optimize the RaFC fiber geometries

  12. Steering knuckle diameter measurement based on optical 3D scanning

    NASA Astrophysics Data System (ADS)

    Song, Li-mei; Li, Da-peng; Chang, Yu-lan; Xi, Jiang-tao; Guo, Qing-hua

    2014-11-01

    To achieve accurate measurements, the creating a fitting hole for internal diameter (CFHID) measurement method and the establishing multi-sectional curve for external diameter (EMCED) measurement method are proposed in this paper, which are based on computer vision principle and three-dimensional (3D) reconstruction. The methods are able to highlight the 3D characteristics of the scanned object and to achieve the accurate measurement of 3D data. It can create favorable conditions for realizing the reverse design and 3D reconstruction of scanned object. These methods can also be applied to dangerous work environment or the occasion that traditional contact measurement can not meet the demands, and they can improve the security in measurement.

  13. A Correction Scheme for Thermal Conductivity Measurement Using the Comparative Cut-bar Technique Based on a 3D Numerical Simulation

    SciTech Connect

    Douglas W. Marshall; Changhu Xing; Charles Folsom; Colby Jensen; Heng Ban

    2014-05-01

    As an important factor affecting the accuracy of the thermal conductivity measurement, systematic (bias) error in the guarded comparative axial heat flow (cut-bar) method was mostly neglected by previous researches. This bias is due primarily to the thermal conductivity mismatch between sample and meter bars (reference), which is common for a sample of unknown thermal conductivity. A correction scheme, based on a finite element simulation of the measurement system, was proposed to reduce the magnitude of the overall measurement uncertainty. This scheme was experimentally validated by applying corrections on four types of sample measurements in which the specimen thermal conductivity is much smaller, slightly smaller, equal and much larger than that of the meter bar. As an alternative to the optimum guarding technique proposed before, the correction scheme can be used to minimize uncertainty contribution from the measurement system with non-optimal guarding conditions. It is especially necessary for large thermal conductivity mismatches between sample and meter bars.

  14. Ground motion simulations in Marmara (Turkey) region from 3D finite difference method

    NASA Astrophysics Data System (ADS)

    Aochi, Hideo; Ulrich, Thomas; Douglas, John

    2016-04-01

    In the framework of the European project MARSite (2012-2016), one of the main contributions from our research team was to provide ground-motion simulations for the Marmara region from various earthquake source scenarios. We adopted a 3D finite difference code, taking into account the 3D structure around the Sea of Marmara (including the bathymetry) and the sea layer. We simulated two moderate earthquakes (about Mw4.5) and found that the 3D structure improves significantly the waveforms compared to the 1D layer model. Simulations were carried out for different earthquakes (moderate point sources and large finite sources) in order to provide shake maps (Aochi and Ulrich, BSSA, 2015), to study the variability of ground-motion parameters (Douglas & Aochi, BSSA, 2016) as well as to provide synthetic seismograms for the blind inversion tests (Diao et al., GJI, 2016). The results are also planned to be integrated in broadband ground-motion simulations, tsunamis generation and simulations of triggered landslides (in progress by different partners). The simulations are freely shared among the partners via the internet and the visualization of the results is diffused on the project's homepage. All these simulations should be seen as a reference for this region, as they are based on the latest knowledge that obtained during the MARSite project, although their refinement and validation of the model parameters and the simulations are a continuing research task relying on continuing observations. The numerical code used, the models and the simulations are available on demand.

  15. Simulation-Guided 3D Nanomanufacturing via Focused Electron Beam Induced Deposition

    DOE PAGESBeta

    Fowlkes, Jason D.; Winkler, Robert; Lewis, Brett B.; Stanford, Michael G.; Plank, Harald; Rack, Philip D.

    2016-06-10

    Focused electron beam induced deposition (FEBID) is one of the few techniques that enables direct-write synthesis of free-standing 3D nanostructures. While the fabrication of simple architectures such as vertical or curving nanowires has been achieved by simple trial and error, processing complex 3D structures is not tractable with this approach. This is due, inpart, to the dynamic interplay between electron–solid interactions and the transient spatial distribution of absorbed precursor molecules on the solid surface. Here, we demonstrate the ability to controllably deposit 3D lattice structures at the micro/nanoscale, which have received recent interest owing to superior mechanical and optical properties.more » Moreover, a hybrid Monte Carlo–continuum simulation is briefly overviewed, and subsequently FEBID experiments and simulations are directly compared. Finally, a 3D computer-aided design (CAD) program is introduced, which generates the beam parameters necessary for FEBID by both simulation and experiment. In using this approach, we demonstrate the fabrication of various 3D lattice structures using Pt-, Au-, and W-based precursors.« less

  16. Simulation-Guided 3D Nanomanufacturing via Focused Electron Beam Induced Deposition.

    PubMed

    Fowlkes, Jason D; Winkler, Robert; Lewis, Brett B; Stanford, Michael G; Plank, Harald; Rack, Philip D

    2016-06-28

    Focused electron beam induced deposition (FEBID) is one of the few techniques that enables direct-write synthesis of free-standing 3D nanostructures. While the fabrication of simple architectures such as vertical or curving nanowires has been achieved by simple trial and error, processing complex 3D structures is not tractable with this approach. In part, this is due to the dynamic interplay between electron-solid interactions and the transient spatial distribution of absorbed precursor molecules on the solid surface. Here, we demonstrate the ability to controllably deposit 3D lattice structures at the micro/nanoscale, which have received recent interest owing to superior mechanical and optical properties. A hybrid Monte Carlo-continuum simulation is briefly overviewed, and subsequently FEBID experiments and simulations are directly compared. Finally, a 3D computer-aided design (CAD) program is introduced, which generates the beam parameters necessary for FEBID by both simulation and experiment. Using this approach, we demonstrate the fabrication of various 3D lattice structures using Pt-, Au-, and W-based precursors. PMID:27284689

  17. Peach Bottom 2 Turbine Trip Simulation Using TRAC-BF1/COS3D, a Best-Estimate Coupled 3-D Core and Thermal-Hydraulic Code System

    SciTech Connect

    Ui, Atsushi; Miyaji, Takamasa

    2004-10-15

    The best-estimate coupled three-dimensional (3-D) core and thermal-hydraulic code system TRAC-BF1/COS3D has been developed. COS3D, based on a modified one-group neutronic model, is a 3-D core simulator used for licensing analyses and core management of commercial boiling water reactor (BWR) plants in Japan. TRAC-BF1 is a plant simulator based on a two-fluid model. TRAC-BF1/COS3D is a coupled system of both codes, which are connected using a parallel computing tool. This code system was applied to the OECD/NRC BWR Turbine Trip Benchmark. Since the two-group cross-section tables are provided by the benchmark team, COS3D was modified to apply to this specification. Three best-estimate scenarios and four hypothetical scenarios were calculated using this code system. In the best-estimate scenario, the predicted core power with TRAC-BF1/COS3D is slightly underestimated compared with the measured data. The reason seems to be a slight difference in the core boundary conditions, that is, pressure changes and the core inlet flow distribution, because the peak in this analysis is sensitive to them. However, the results of this benchmark analysis show that TRAC-BF1/COS3D gives good precision for the prediction of the actual BWR transient behavior on the whole. Furthermore, the results with the modified one-group model and the two-group model were compared to verify the application of the modified one-group model to this benchmark. This comparison shows that the results of the modified one-group model are appropriate and sufficiently precise.

  18. An object-oriented simulator for 3D digital breast tomosynthesis imaging system.

    PubMed

    Seyyedi, Saeed; Cengiz, Kubra; Kamasak, Mustafa; Yildirim, Isa

    2013-01-01

    Digital breast tomosynthesis (DBT) is an innovative imaging modality that provides 3D reconstructed images of breast to detect the breast cancer. Projections obtained with an X-ray source moving in a limited angle interval are used to reconstruct 3D image of breast. Several reconstruction algorithms are available for DBT imaging. Filtered back projection algorithm has traditionally been used to reconstruct images from projections. Iterative reconstruction algorithms such as algebraic reconstruction technique (ART) were later developed. Recently, compressed sensing based methods have been proposed in tomosynthesis imaging problem. We have developed an object-oriented simulator for 3D digital breast tomosynthesis (DBT) imaging system using C++ programming language. The simulator is capable of implementing different iterative and compressed sensing based reconstruction methods on 3D digital tomosynthesis data sets and phantom models. A user friendly graphical user interface (GUI) helps users to select and run the desired methods on the designed phantom models or real data sets. The simulator has been tested on a phantom study that simulates breast tomosynthesis imaging problem. Results obtained with various methods including algebraic reconstruction technique (ART) and total variation regularized reconstruction techniques (ART+TV) are presented. Reconstruction results of the methods are compared both visually and quantitatively by evaluating performances of the methods using mean structural similarity (MSSIM) values. PMID:24371468

  19. Towards implementing plate tectonics in 3D mantle convection simulations

    NASA Astrophysics Data System (ADS)

    Bollada, Peter; Davies, Huw

    2010-05-01

    One of the great challenges in numerical mantle convection simulations is to achieve models that naturally develop plate tectonic like behaviour at the surface. In this work we are looking to achieve such models by investigating the set of models where a single consistent rheology is used for the whole model. We have started by investigating a viscoelastic rheology, related to the Oldroyd-B model from the field of polymers. The goal will be to have the parameter that controls the relaxation between elastic and viscous behaviour to depend upon temperature, pressure and strain-rate. With an appropriate choice of this dependence we have, on the near surface, high viscous/elastic regions interfaced with lower, pure viscous, regions of high strain-rate; while it also becomes more viscous at depth in the interior. In this way we hope to obtain plate like behaviour at the surface which naturally progresses to viscous convective behaviour in the interior. We have started to implement this model in the established mantle 3D finite element spherical mantle convection code TERRA (Baumgardner, 1984). Some parts of the model have been implemented as a force (to be combined with the gravitational body force) on the right hand side. The work has required us to develop and code in TERRA: (i) methods to overcome the continuity problem of the stress field stemming from the fact that the velocity field is represented by linear finite elements; (ii) new operators to handle stress and its gradients; (iii) methods to analyse plate-like behaviour at the surface (iv) the necessary functional dependence of viscosity and elastic relaxation time on temperature, strain-rate and pressure We will present the background to the work, its implementation and results.

  20. Feature-Based Quality Evaluation of 3d Point Clouds - Study of the Performance of 3d Registration Algorithms

    NASA Astrophysics Data System (ADS)

    Ridene, T.; Goulette, F.; Chendeb, S.

    2013-08-01

    The production of realistic 3D map databases is continuously growing. We studied an approach of 3D mapping database producing based on the fusion of heterogeneous 3D data. In this term, a rigid registration process was performed. Before starting the modeling process, we need to validate the quality of the registration results, and this is one of the most difficult and open research problems. In this paper, we suggest a new method of evaluation of 3D point clouds based on feature extraction and comparison with a 2D reference model. This method is based on tow metrics: binary and fuzzy.

  1. Simulating the multi-seasonal response of a large-scale watershed with a 3D physically-based hydrologic model

    NASA Astrophysics Data System (ADS)

    Li, Q.; Unger, A. J. A.; Sudicky, E. A.; Kassenaar, D.; Wexler, E. J.; Shikaze, S.

    2008-08-01

    SummaryThe physically-based surface-subsurface HydroGeoSphere model is used to examine the hydrologic budget of the 286.6 km 2 Duffins Creek watershed, located 10 km northeast of metropolitan Toronto. The primary objective of this study is to demonstrate the utility of the model to simulate the three-dimensional hydrologic response of the surface and subsurface flow systems in a large-scale watershed driven by multi-season precipitation events. The hydrologic model was calibrated to a consecutive sequence of hydrographs resulting from all precipitation events between the months of April and December 1986, while hydrographs from 1987 were used to test the model's ability for prediction. Results demonstrate that a physically-based modeling approach which treats the surface and subsurface flow systems as an integrated continuum can capture the dynamic response of a large heterogeneous watershed as driven by transient precipitation events over a multi-season period. It was also revealed that full coupling of plant transpiration and surface-subsurface evaporation processes into the governing flow equations was critical for the successful calibration of the hydrographs. However, the ability of the model to predict the shape of individual hydrographs in the following year, during which the annual average precipitation rate decreased significantly, was diminished even though the annual average stream flows were closely replicated. We identify a number of data gaps that contribute to the decline in the predictive capacity of the model, including difficulty in establishing an appropriate initial condition, vertical mesh refinement issues within the root zone, and the reliance on a largely empirical relationship that distributes the net capacity for plant transpiration among various factors that may change from one year to the next.

  2. Flexible simulation framework to couple processes in complex 3D models for subsurface utilization assessment

    NASA Astrophysics Data System (ADS)

    Kempka, Thomas; Nakaten, Benjamin; De Lucia, Marco; Nakaten, Natalie; Otto, Christopher; Pohl, Maik; Tillner, Elena; Kühn, Michael

    2016-04-01

    Utilization of the geological subsurface for production and storage of hydrocarbons, chemical energy and heat as well as for waste disposal requires the quantification and mitigation of environmental impacts as well as the improvement of georesources utilization in terms of efficiency and sustainability. The development of tools for coupled process simulations is essential to tackle these challenges, since reliable assessments are only feasible by integrative numerical computations. Coupled processes at reservoir to regional scale determine the behaviour of reservoirs, faults and caprocks, generally demanding for complex 3D geological models to be considered besides available monitoring and experimenting data in coupled numerical simulations. We have been developing a flexible numerical simulation framework that provides efficient workflows for integrating the required data and software packages to carry out coupled process simulations considering, e.g., multiphase fluid flow, geomechanics, geochemistry and heat. Simulation results are stored in structured data formats to allow for an integrated 3D visualization and result interpretation as well as data archiving and its provision to collaborators. The main benefits in using the flexible simulation framework are the integration of data geological and grid data from any third party software package as well as data export to generic 3D visualization tools and archiving formats. The coupling of the required process simulators in time and space is feasible, while different spatial dimensions in the coupled simulations can be integrated, e.g., 0D batch with 3D dynamic simulations. User interaction is established via high-level programming languages, while computational efficiency is achieved by using low-level programming languages. We present three case studies on the assessment of geological subsurface utilization based on different process coupling approaches and numerical simulations.

  3. 3D Spectral Element Method Simulations Of The Seismic Response of Caracas (Venezuela) Basin

    NASA Astrophysics Data System (ADS)

    Delavaud, E.; Vilotte, J.; Festa, G.; Cupillard, P.

    2007-12-01

    We present here 3D numerical simulations of the response of the Caracas (Venezuela) valley up to 5 Hz for different scenarios of plane wave excitation based on the regional seismicity. Attention is focused on the effects of the 3D basin geometry and of the adjacent regional topography. The simulations are performed using Spectral Element method (SEM) together with an unstructured hexahedral mesh discretization and perfectly matched layers (PML). These simulations show 3D amplification phenomena associated with complex wave reflexion, diffraction and focalisation patterns linked to the geometry of the basin. Time and frequency analysis reveal some interesting features both in terms of amplification and energy residence in the basin. The low frequency amplification pattern is mainly controlled by the early response of the basin to the incident plane wave while the high frequency amplification patterns result mainly from late arrivals where complex 3D wave diffraction phenomena are dominating and the memory of the initial excitation is lost. Interestingly enough, it is shown that H/V method correctly predict the low frequency amplification pattern when apply to the late part of the recorded seismograms. The complex high frequency amplification pattern is shown to be associated with surface wave generation at, and propagation from, sharp edges of the basin. Importance of 3D phenomena is assessed by comparison with simple 2D simulations. Significant differences in terms of time of residence, energy and amplification levels point out the interest of complete 3D modeling. In conclusions some of the limitations associated with the use of unstructured hexahedral meshes will be adressed. Despite the use of unstructured meshing tool, modeling the geometry of geological basins remain a complex and time consuming task. Possible extensions using more elaborate techniques like non conforming domain decomposition will be also discussed in conclusion.

  4. A CCD-based optical CT scanner for high-resolution 3D imaging of radiation dose distributions: equipment specifications, optical simulations and preliminary results

    NASA Astrophysics Data System (ADS)

    Doran, Simon J.; Klein Koerkamp, Koen; Bero, Mamdouh A.; Jenneson, Paul; Morton, Edward J.; Gilboy, Walter B.

    2001-12-01

    Methods based on magnetic resonance imaging for the measurement of three-dimensional distributions of radiation dose are highly developed. However, relatively little work has been done on optical computed tomography (OCT). This paper describes a new OCT scanner based on a broad beam light source and a two-dimensional charge-coupled device (CCD) detector. A number of key design features are discussed including the light source; the scanning tank, turntable and stepper motor control; the diffuser screen onto which images are projected and the detector. It is shown that the non-uniform pixel sensitivity of the low-cost CCD detector used and the granularity of the diffuser screen lead to a serious ring artefact in the reconstructed images. Methods are described for eliminating this. The problems arising from reflection and refraction at the walls of the gel container are explained. Optical ray-tracing simulations are presented for cylindrical containers with a variety of radii and verified experimentally. Small changes in the model parameters lead to large variations in the signal intensity observed in the projection data. The effect of imperfect containers on data quality is discussed and a method based on a 'correction scan' is shown to be successful in correcting many of the related image artefacts. The results of two tomography experiments are presented. In the first experiment, a radiochromic Fricke gel sample was exposed four times in different positions to a 100 kVp x-ray beam perpendicular to the plane of imaging. Images of absorbed dose with slice thickness of 140 μm were acquired, with 'true' in-plane resolution of 560 × 560 μm2 at the edge of the 72 mm field of view and correspondingly higher resolution at the centre. The nominal doses measured correlated well with the known exposure times. The second experiment demonstrated the well known phenomenon of diffusion in the dosemeter gels and yielded a value of (0.12 +/- 0.02) mm2 s-1 for the diffusion

  5. A CCD-based optical CT scanner for high-resolution 3D imaging of radiation dose distributions: equipment specifications, optical simulations and preliminary results.

    PubMed

    Doran, S J; Koerkamp, K K; Bero, M A; Jenneson, P; Morton, E J; Gilboy, W B

    2001-12-01

    Methods based on magnetic resonance imaging for the measurement of three-dimensional distributions of radiation dose are highly developed. However, relatively little work has been done on optical computed tomography (OCT). This paper describes a new OCT scanner based on a broad beam light source and a two-dimensional charge-coupled device (CCD) detector. A number of key design features are discussed including the light source; the scanning tank, turntable and stepper motor control; the diffuser screen onto which images are projected and the detector. It is shown that the non-uniform pixel sensitivity of the low-cost CCD detector used and the granularity of the diffuser screen lead to a serious ring artefact in the reconstructed images. Methods are described for eliminating this. The problems arising from reflection and refraction at the walls of the gel container are explained. Optical ray-tracing simulations are presented for cylindrical containers with a variety of radii and verified experimentally. Small changes in the model parameters lead to large variations in the signal intensity observed in the projection data. The effect of imperfect containers on data quality is discussed and a method based on a 'correction scan' is shown to be successful in correcting many of the related image artefacts. The results of two tomography experiments are presented. In the first experiment, a radiochromic Fricke gel sample was exposed four times in different positions to a 100 kVp x-ray beam perpendicular to the plane of imaging. Images of absorbed dose with slice thickness of 140 microm were acquired. with 'true' in-plane resolution of 560 x 560 microm2 at the edge of the 72 mm field of view and correspondingly higher resolution at the centre. The nominal doses measured correlated well with the known exposure times. The second experiment demonstrated the well known phenomenon of diffusion in the dosemeter gels and yielded a value of (0.12 +/- 0.02) mm2 s(-1) for the diffusion

  6. Perceptual quality measurement of 3D images based on binocular vision.

    PubMed

    Zhou, Wujie; Yu, Lu

    2015-07-20

    Three-dimensional (3D) technology has become immensely popular in recent years and widely adopted in various applications. Hence, perceptual quality measurement of symmetrically and asymmetrically distorted 3D images has become an important, fundamental, and challenging issue in 3D imaging research. In this paper, we propose a binocular-vision-based 3D image-quality measurement (IQM) metric. Consideration of the 3D perceptual properties of the primary visual cortex (V1) and the higher visual areas (V2) for 3D-IQM is the major technical contribution to this research. To be more specific, first, the metric simulates the receptive fields of complex cells (V1) using binocular energy response and binocular rivalry response and the higher visual areas (V2) using local binary patterns features. Then, three similarity scores of 3D perceptual properties between the reference and distorted 3D images are measured. Finally, by using support vector regression, three similarity scores are integrated into an overall 3D quality score. Experimental results for two public benchmark databases demonstrate that, in comparison with most current 2D and 3D metrics, the proposed metric achieves significantly higher consistency in alignment with subjective fidelity ratings. PMID:26367842

  7. SIFT algorithm-based 3D pose estimation of femur.

    PubMed

    Zhang, Xuehe; Zhu, Yanhe; Li, Changle; Zhao, Jie; Li, Ge

    2014-01-01

    To address the lack of 3D space information in the digital radiography of a patient femur, a pose estimation method based on 2D-3D rigid registration is proposed in this study. The method uses two digital radiography images to realize the preoperative 3D visualization of a fractured femur. Compared with the pure Digital Radiography or Computed Tomography imaging diagnostic methods, the proposed method has the advantages of low cost, high precision, and minimal harmful radiation. First, stable matching point pairs in the frontal and lateral images of the patient femur and the universal femur are obtained by using the Scale Invariant Feature Transform method. Then, the 3D pose estimation registration parameters of the femur are calculated by using the Iterative Closest Point (ICP) algorithm. Finally, based on the deviation between the six degrees freedom parameter calculated by the proposed method, preset posture parameters are calculated to evaluate registration accuracy. After registration, the rotation error is less than l.5°, and the translation error is less than 1.2 mm, which indicate that the proposed method has high precision and robustness. The proposed method provides 3D image information for effective preoperative orthopedic diagnosis and surgery planning. PMID:25226990

  8. Evaluating Biomaterial- and Microfluidic-Based 3D Tumor Models.

    PubMed

    Carvalho, Mariana R; Lima, Daniela; Reis, Rui L; Correlo, Vitor M; Oliveira, Joaquim M

    2015-11-01

    Cancer is a major cause of morbidity and mortality worldwide, with a disease burden estimated to increase over the coming decades. Disease heterogeneity and limited information on cancer biology and disease mechanisms are aspects that 2D cell cultures fail to address. Here, we review the current ‘state-of-the-art’ in 3D tissue-engineering (TE) models developed for, and used in, cancer research. We assess the potential for scaffold-based TE models and microfluidics to fill the gap between 2D models and clinical application. We also discuss recent advances in combining the principles of 3D TE models and microfluidics, with a special focus on biomaterials and the most promising chip-based 3D models. PMID:26603572

  9. Simulated 3D ultrasound LV cardiac images for active shape model training

    NASA Astrophysics Data System (ADS)

    Butakoff, Constantine; Balocco, Simone; Ordas, Sebastian; Frangi, Alejandro F.

    2007-03-01

    In this paper a study of 3D ultrasound cardiac segmentation using Active Shape Models (ASM) is presented. The proposed approach is based on a combination of a point distribution model constructed from a multitude of high resolution MRI scans and the appearance model obtained from simulated 3D ultrasound images. Usually the appearance model is learnt from a set of landmarked images. The significant level of noise, the low resolution of 3D ultrasound images (3D US) and the frequent failure to capture the complete wall of the left ventricle (LV) makes automatic or manual landmarking difficult. One possible solution is to use artificially simulated 3D US images since the generated images will match exactly the shape in question. In this way, by varying simulation parameters and generating corresponding images, it is possible to obtain a training set where the image matches the shape exactly. In this work the simulation of ultrasound images is performed by a convolutional approach. The evaluation of segmentation accuracy is performed on both simulated and in vivo images. The results obtained on 567 simulated images had an average error of 1.9 mm (1.73 +/- 0.05 mm for epicardium and 2 +/- 0.07 mm for endocardium, with 95% confidence) with voxel size being 1.1 × 1.1 × 0.7 mm. The error on 20 in vivo data was 3.5 mm (3.44 +/- 0.4 mm for epicardium and 3.73 +/- 0.4 mm for endocardium). In most images the model was able to approximate the borders of myocardium even when the latter was indistinguishable from the surrounding tissues.

  10. Advanced 3D Photocathode Modeling and Simulations Final Report

    SciTech Connect

    Dimitre A Dimitrov; David L Bruhwiler

    2005-06-06

    High brightness electron beams required by the proposed Next Linear Collider demand strong advances in photocathode electron gun performance. Significant improvement in the production of such beams with rf photocathode electron guns is hampered by the lack high-fidelity simulations. The critical missing piece in existing gun codes is a physics-based, detailed treatment of the very complex and highly nonlinear photoemission process.

  11. 3-D dynamic rupture simulations by a finite volume method

    NASA Astrophysics Data System (ADS)

    Benjemaa, M.; Glinsky-Olivier, N.; Cruz-Atienza, V. M.; Virieux, J.

    2009-07-01

    Dynamic rupture of a 3-D spontaneous crack of arbitrary shape is investigated using a finite volume (FV) approach. The full domain is decomposed in tetrahedra whereas the surface, on which the rupture takes place, is discretized with triangles that are faces of tetrahedra. First of all, the elastodynamic equations are described into a pseudo-conservative form for an easy application of the FV discretization. Explicit boundary conditions are given using criteria based on the conservation of discrete energy through the crack surface. Using a stress-threshold criterion, these conditions specify fluxes through those triangles that have suffered rupture. On these broken surfaces, stress follows a linear slip-weakening law, although other friction laws can be implemented. For The Problem Version 3 of the dynamic-rupture code verification exercise conducted by the SCEC/USGS, numerical solutions on a planar fault exhibit a very high convergence rate and are in good agreement with the reference one provided by a finite difference (FD) technique. For a non-planar fault of parabolic shape, numerical solutions agree satisfactorily well with those obtained with a semi-analytical boundary integral method in terms of shear stress amplitudes, stopping phases arrival times and stress overshoots. Differences between solutions are attributed to the low-order interpolation of the FV approach, whose results are particularly sensitive to the mesh regularity (structured/unstructured). We expect this method, which is well adapted for multiprocessor parallel computing, to be competitive with others for solving large scale dynamic ruptures scenarios of seismic sources in the near future.

  12. Optical 3D watermark based digital image watermarking for telemedicine

    NASA Astrophysics Data System (ADS)

    Li, Xiao Wei; Kim, Seok Tae

    2013-12-01

    Region of interest (ROI) of a medical image is an area including important diagnostic information and must be stored without any distortion. This algorithm for application of watermarking technique for non-ROI of the medical image preserving ROI. The paper presents a 3D watermark based medical image watermarking scheme. In this paper, a 3D watermark object is first decomposed into 2D elemental image array (EIA) by a lenslet array, and then the 2D elemental image array data is embedded into the host image. The watermark extraction process is an inverse process of embedding. The extracted EIA through the computational integral imaging reconstruction (CIIR) technique, the 3D watermark can be reconstructed. Because the EIA is composed of a number of elemental images possesses their own perspectives of a 3D watermark object. Even though the embedded watermark data badly damaged, the 3D virtual watermark can be successfully reconstructed. Furthermore, using CAT with various rule number parameters, it is possible to get many channels for embedding. So our method can recover the weak point having only one transform plane in traditional watermarking methods. The effectiveness of the proposed watermarking scheme is demonstrated with the aid of experimental results.

  13. Shape control in wafer-based aperiodic 3D nanostructures

    NASA Astrophysics Data System (ADS)

    Jeong, Hyeon-Ho; Mark, Andrew G.; Gibbs, John G.; Reindl, Thomas; Waizmann, Ulrike; Weis, Jürgen; Fischer, Peer

    2014-06-01

    Controlled local fabrication of three-dimensional (3D) nanostructures is important to explore and enhance the function of single nanodevices, but is experimentally challenging. We present a scheme based on e-beam lithography (EBL) written seeds, and glancing angle deposition (GLAD) grown structures to create nanoscale objects with defined shapes but in aperiodic arrangements. By using a continuous sacrificial corral surrounding the features of interest we grow isolated 3D nanostructures that have complex cross-sections and sidewall morphology that are surrounded by zones of clean substrate.

  14. GPU-based 3D lower tree wavelet video encoder

    NASA Astrophysics Data System (ADS)

    Galiano, Vicente; López-Granado, Otoniel; Malumbres, Manuel P.; Drummond, Leroy Anthony; Migallón, Hector

    2013-12-01

    The 3D-DWT is a mathematical tool of increasing importance in those applications that require an efficient processing of huge amounts of volumetric info. Other applications like professional video editing, video surveillance applications, multi-spectral satellite imaging, HQ video delivery, etc, would rather use 3D-DWT encoders to reconstruct a frame as fast as possible. In this article, we introduce a fast GPU-based encoder which uses 3D-DWT transform and lower trees. Also, we present an exhaustive analysis of the use of GPU memory. Our proposal shows good trade off between R/D, coding delay (as fast as MPEG-2 for High definition) and memory requirements (up to 6 times less memory than x264).

  15. Robust model-based 3d/3D fusion using sparse matching for minimally invasive surgery.

    PubMed

    Neumann, Dominik; Grbic, Sasa; John, Matthias; Navab, Nassir; Hornegger, Joachim; Ionasec, Razvan

    2013-01-01

    Classical surgery is being disrupted by minimally invasive and transcatheter procedures. As there is no direct view or access to the affected anatomy, advanced imaging techniques such as 3D C-arm CT and C-arm fluoroscopy are routinely used for intra-operative guidance. However, intra-operative modalities have limited image quality of the soft tissue and a reliable assessment of the cardiac anatomy can only be made by injecting contrast agent, which is harmful to the patient and requires complex acquisition protocols. We propose a novel sparse matching approach for fusing high quality pre-operative CT and non-contrasted, non-gated intra-operative C-arm CT by utilizing robust machine learning and numerical optimization techniques. Thus, high-quality patient-specific models can be extracted from the pre-operative CT and mapped to the intra-operative imaging environment to guide minimally invasive procedures. Extensive quantitative experiments demonstrate that our model-based fusion approach has an average execution time of 2.9 s, while the accuracy lies within expert user confidence intervals. PMID:24505663

  16. Hierarchical Approach to 'Atomistic' 3-D MOSFET Simulation

    NASA Technical Reports Server (NTRS)

    Asenov, Asen; Brown, Andrew R.; Davies, John H.; Saini, Subhash

    1999-01-01

    We present a hierarchical approach to the 'atomistic' simulation of aggressively scaled sub-0.1 micron MOSFET's. These devices are so small that their characteristics depend on the precise location of dopant atoms within them, not just on their average density. A full-scale three-dimensional drift-diffusion atomistic simulation approach is first described and used to verify more economical, but restricted, options. To reduce processor time and memory requirements at high drain voltage, we have developed a self-consistent option based on a solution of the current continuity equation restricted to a thin slab of the channel. This is coupled to the solution of the Poisson equation in the whole simulation domain in the Gummel iteration cycles. The accuracy of this approach is investigated in comparison to the full self-consistent solution. At low drain voltage, a single solution of the nonlinear Poisson equation is sufficient to extract the current with satisfactory accuracy. In this case, the current is calculated by solving the current continuity equation in a drift approximation only, also in a thin slab containing the MOSFET channel. The regions of applicability for the different components of this hierarchical approach are illustrated in example simulations covering the random dopant-induced threshold voltage fluctuations, threshold voltage lowering, threshold voltage asymmetry, and drain current fluctuations.

  17. 3D simulation studies of tokamak plasmas using MHD and extended-MHD models

    SciTech Connect

    Park, W.; Chang, Z.; Fredrickson, E.; Fu, G.Y.

    1996-12-31

    The M3D (Multi-level 3D) tokamak simulation project aims at the simulation of tokamak plasmas using a multi-level tokamak code package. Several current applications using MHD and Extended-MHD models are presented; high-{beta} disruption studies in reversed shear plasmas using the MHD level MH3D code, {omega}{sub *i} stabilization and nonlinear island saturation of TAE mode using the hybrid particle/MHD level MH3D-K code, and unstructured mesh MH3D{sup ++} code studies. In particular, three internal mode disruption mechanisms are identified from simulation results which agree which agree well with experimental data.

  18. Perception-based shape retrieval for 3D building models

    NASA Astrophysics Data System (ADS)

    Zhang, Man; Zhang, Liqiang; Takis Mathiopoulos, P.; Ding, Yusi; Wang, Hao

    2013-01-01

    With the help of 3D search engines, a large number of 3D building models can be retrieved freely online. A serious disadvantage of most rotation-insensitive shape descriptors is their inability to distinguish between two 3D building models which are different at their main axes, but appear similar when one of them is rotated. To resolve this problem, we present a novel upright-based normalization method which not only correctly rotates such building models, but also greatly simplifies and accelerates the abstraction and the matching of building models' shape descriptors. Moreover, the abundance of architectural styles significantly hinders the effective shape retrieval of building models. Our research has shown that buildings with different designs are not well distinguished by the widely recognized shape descriptors for general 3D models. Motivated by this observation and to further improve the shape retrieval quality, a new building matching method is introduced and analyzed based on concepts found in the field of perception theory and the well-known Light Field descriptor. The resulting normalized building models are first classified using the qualitative shape descriptors of Shell and Unevenness which outline integral geometrical and topological information. These models are then put in on orderly fashion with the help of an improved quantitative shape descriptor which we will term as Horizontal Light Field Descriptor, since it assembles detailed shape characteristics. To accurately evaluate the proposed methodology, an enlarged building shape database which extends previous well-known shape benchmarks was implemented as well as a model retrieval system supporting inputs from 2D sketches and 3D models. Various experimental performance evaluation results have shown that, as compared to previous methods, retrievals employing the proposed matching methodology are faster and more consistent with human recognition of spatial objects. In addition these performance

  19. Macroscopic Carbon Nanotube-based 3D Monoliths.

    PubMed

    Du, Ran; Zhao, Qiuchen; Zhang, Na; Zhang, Jin

    2015-07-15

    Carbon nanotubes (CNTs) are one of the most promising carbon allotropes with incredible diverse physicochemical properties, thereby enjoying continuous worldwide attention since their discovery about two decades ago. From the point of view of practical applications, assembling individual CNTs into macroscopic functional and high-performance materials is of paramount importance. For example, multiscaled CNT-based assemblies including 1D fibers, 2D films, and 3D monoliths have been developed. Among all of these, monolithic 3D CNT architectures with porous structures have attracted increasing interest in the last few years. In this form, theoretically all individual CNTs are well connected and fully expose their surfaces. These 3D architectures have huge specific surface areas, hierarchical pores, and interconnected conductive networks, resulting in enhanced mass/electron transport and countless accessible active sites for diverse applications (e.g. catalysis, capacitors, and sorption). More importantly, the monolithic form of 3D CNT assemblies can impart additional application potentials to materials, such as free-standing electrodes, sensors, and recyclable sorbents. However, scaling the properties of individual CNTs to 3D assemblies, improving use of the diverse, structure-dependent properties of CNTs, and increasing the performance-to-cost ratio are great unsolved challenges for their real commercialization. This review aims to provide a comprehensive introduction of this young and energetic field, i.e., CNT-based 3D monoliths, with a focus on the preparation principles, current synthetic methods, and typical applications. Opportunities and challenges in this field are also presented. PMID:25740457

  20. Development of a 3D-printed external ventricular drain placement simulator: technical note.

    PubMed

    Tai, Bruce L; Rooney, Deborah; Stephenson, Francesca; Liao, Peng-Siang; Sagher, Oren; Shih, Albert J; Savastano, Luis E

    2015-10-01

    In this paper, the authors present a physical model developed to simulate accurate external ventricular drain (EVD) placement with realistic haptic and visual feedbacks to serve as a platform for complete procedural training. Insertion of an EVD via ventriculostomy is a common neurosurgical procedure used to monitor intracranial pressures and/or drain CSF. Currently, realistic training tools are scarce and mainly limited to virtual reality simulation systems. The use of 3D printing technology enables the development of realistic anatomical structures and customized design for physical simulators. In this study, the authors used the advantages of 3D printing to directly build the model geometry from stealth head CT scans and build a phantom brain mold based on 3D scans of a plastinated human brain. The resultant simulator provides realistic haptic feedback during a procedure, with visualization of catheter trajectory and fluid drainage. A multiinstitutional survey was also used to prove content validity of the simulator. With minor refinement, this simulator is expected to be a cost-effective tool for training neurosurgical residents in EVD placement. PMID:26115472

  1. Fast error simulation of optical 3D measurements at translucent objects

    NASA Astrophysics Data System (ADS)

    Lutzke, P.; Kühmstedt, P.; Notni, G.

    2012-09-01

    The scan results of optical 3D measurements at translucent objects deviate from the real objects surface. This error is caused by the fact that light is scattered in the objects volume and is not exclusively reflected at its surface. A few approaches were made to separate the surface reflected light from the volume scattered. For smooth objects the surface reflected light is dominantly concentrated in specular direction and could only be observed from a point in this direction. Thus the separation either leads to measurement results only creating data for near specular directions or provides data from not well separated areas. To ensure the flexibility and precision of optical 3D measurement systems for translucent materials it is necessary to enhance the understanding of the error forming process. For this purpose a technique for simulating the 3D measurement at translucent objects is presented. A simple error model is shortly outlined and extended to an efficient simulation environment based upon ordinary raytracing methods. In comparison the results of a Monte-Carlo simulation are presented. Only a few material and object parameters are needed for the raytracing simulation approach. The attempt of in-system collection of these material and object specific parameters is illustrated. The main concept of developing an error-compensation method based on the simulation environment and the collected parameters is described. The complete procedure is using both, the surface reflected and the volume scattered light for further processing.

  2. Computer-Based 3D Simulation: A Study of Communication Practices in a Trauma Team Performing Patient Examination and Diagnostic Work

    ERIC Educational Resources Information Center

    Krange, Ingeborg; Moen, Anne; Ludvigsen, Sten

    2012-01-01

    Diagnostic work in trauma teams is critical for the patient's condition and for the possibility of survival. It is a difficult situation to train due to the inherently unpredictable and time-critical practice when an injured patient presents in the Emergency Room (ER). Different types of simulations have been developed for specialized training of…

  3. CELSS-3D: a broad computer model simulating a controlled ecological life support system.

    PubMed

    Schneegurt, M A; Sherman, L A

    1997-01-01

    CELSS-3D is a dynamic, deterministic, and discrete computer simulation of a controlled ecological life support system (CELSS) focusing on biological issues. A series of linear difference equations within a graphic-based modeling environment, the IThink program, was used to describe a modular CELSS system. The overall model included submodels for crop growth chambers, food storage reservoirs, the human crew, a cyanobacterial growth chamber, a waste processor, fixed nitrogen reservoirs, and the atmospheric gases, CO, O2, and N2. The primary process variable was carbon, although oxygen and nitrogen flows were also modeled. Most of the input data used in CELSS-3D were from published sources. A separate linear optimization program, What'sBest!, was used to compare options for the crew's vegetarian diet. CELSS-3D simulations were run for the equivalent of 3 years with a 1-h time interval. Output from simulations run under nominal conditions was used to illustrate dynamic changes in the concentrations of atmospheric gases. The modular design of CELSS-3D will allow other configurations and various failure scenarios to be tested and compared. PMID:11540449

  4. 3D ear identification based on sparse representation.

    PubMed

    Zhang, Lin; Ding, Zhixuan; Li, Hongyu; Shen, Ying

    2014-01-01

    Biometrics based personal authentication is an effective way for automatically recognizing, with a high confidence, a person's identity. Recently, 3D ear shape has attracted tremendous interests in research field due to its richness of feature and ease of acquisition. However, the existing ICP (Iterative Closet Point)-based 3D ear matching methods prevalent in the literature are not quite efficient to cope with the one-to-many identification case. In this paper, we aim to fill this gap by proposing a novel effective fully automatic 3D ear identification system. We at first propose an accurate and efficient template-based ear detection method. By utilizing such a method, the extracted ear regions are represented in a common canonical coordinate system determined by the ear contour template, which facilitates much the following stages of feature extraction and classification. For each extracted 3D ear, a feature vector is generated as its representation by making use of a PCA-based local feature descriptor. At the stage of classification, we resort to the sparse representation based classification approach, which actually solves an l1-minimization problem. To the best of our knowledge, this is the first work introducing the sparse representation framework into the field of 3D ear identification. Extensive experiments conducted on a benchmark dataset corroborate the effectiveness and efficiency of the proposed approach. The associated Matlab source code and the evaluation results have been made publicly online available at http://sse.tongji.edu.cn/linzhang/ear/srcear/srcear.htm. PMID:24740247

  5. 3D Hybrid Simulation of the Titan's Plasma Environment

    NASA Astrophysics Data System (ADS)

    Lipatov, A. S.; Sittler, E. C.; Hartle, R. E.

    2007-05-01

    Titan plays an important role as a simulation laboratory for multiscale kinetic plasma processes which are key processes in space and laboratory plasmas. A development of multiscale combined numerical methods allows us to use more realistic plasma models at Titan. In this report, we describe a Particle-Ion--Fluid-Ion--Fluid- Electron method of kinetic ion-neutral simulation code (see, e.g. [Lipatov, 2002]). This method takes into account charge-exchange and photoionization processes. The model of atmosphere of Titan was based on a paper by Sittler, Hartle, Vinas et al., [2005]. The background ions H+, O+ and pickup ions H2+, CH4+ and N2+ are described in a kinetic approximation, where the electrons are approximated as a fluid. In this report we study the coupling between background ions and pickup ions on the multiple space scales determined by the ion gyroradiis. The first results of such a simulation of the dynamics of ions near Titan are discussed in this report and compared with recent measurements made by the Cassini Plasma Spectrometer (CAPS, [Hartle, Sittler et al., 2006]). E C Sittler Jr., R E Hartle, A F Vinas, R E Johnson, H T Smith and I Mueller-Wodarg, J. Geophys. Res., 110, A09302, 2005. R. E. Hartle, E. C. Sittler, F. M. Neubauer, R. E. Johnson, et al., Planet. Space Sci., 54, 1211, 2006. A S Lipatov, The Hybrid Multiscale Simulation Technology. An Introduction with Application to Astrophysical and Laboratory Plasmas, Springer-Verlag, Berlin, Heidelberg, New York, 2002, p.p. 1-403.

  6. DREAM3D simulations of inner-belt dynamics

    SciTech Connect

    Cunningham, Gregory Scott

    2015-05-26

    A 1973 paper by Lyons and Thorne explains the two-belt structure for electrons in the inner magnetosphere as a balance between inward radial diffusion and loss to the atmosphere, where the loss to the atmosphere is enabled by pitch-angle scattering from Coulomb and wave-particle interactions. In the 1973 paper, equilibrium solutions to a decoupled set of 1D radial diffusion equations, one for each value of the first invariant of motion, μ, were computed to produce the equilibrium two-belt structure. Each 1D radial diffusion equation incorporated an L-and μ-dependent `lifetime' due to the Coulomb and wave-particle interactions. This decoupling of the problem is appropriate under the assumption that radial diffusion is slow in comparison to pitch-angle scattering. However, for some values of μ and L the lifetime associated with pitch-angle scattering is comparable to the timescale associated with radial diffusion, suggesting that the true equilibrium solutions might reflect `coupled modes' involving pitch-angle scattering and radial diffusion and thus requiring a 3D diffusion model. In the work we show here, we have computed the equilibrium solutions using our 3D diffusion model, DREAM3D, that allows for such coupling. We find that the 3D equilibrium solutions are quite similar to the solutions shown in the 1973 paper when we use the same physical models for radial diffusion and pitch-angle scattering from hiss. However, we show that the equilibrium solutions are quite sensitive to various aspects of the physics model employed in the 1973 paper that can be improved, suggesting that additional work needs to be done to understand the two-belt structure.

  7. Integrated optical 3D digital imaging based on DSP scheme

    NASA Astrophysics Data System (ADS)

    Wang, Xiaodong; Peng, Xiang; Gao, Bruce Z.

    2008-03-01

    We present a scheme of integrated optical 3-D digital imaging (IO3DI) based on digital signal processor (DSP), which can acquire range images independently without PC support. This scheme is based on a parallel hardware structure with aid of DSP and field programmable gate array (FPGA) to realize 3-D imaging. In this integrated scheme of 3-D imaging, the phase measurement profilometry is adopted. To realize the pipeline processing of the fringe projection, image acquisition and fringe pattern analysis, we present a multi-threads application program that is developed under the environment of DSP/BIOS RTOS (real-time operating system). Since RTOS provides a preemptive kernel and powerful configuration tool, with which we are able to achieve a real-time scheduling and synchronization. To accelerate automatic fringe analysis and phase unwrapping, we make use of the technique of software optimization. The proposed scheme can reach a performance of 39.5 f/s (frames per second), so it may well fit into real-time fringe-pattern analysis and can implement fast 3-D imaging. Experiment results are also presented to show the validity of proposed scheme.

  8. Using 3-D Numerical Weather Data in Piloted Simulations

    NASA Technical Reports Server (NTRS)

    Daniels, Taumi S.

    2016-01-01

    This report describes the process of acquiring and using 3-D numerical model weather data sets in NASA Langley's Research Flight Deck (RFD). A set of software tools implement the process and can be used for other purposes as well. Given time and location information of a weather phenomenon of interest, the user can download associated numerical weather model data. These data are created by the National Oceanic and Atmospheric Administration (NOAA) High Resolution Rapid Refresh (HRRR) model, and are then processed using a set of Mathworks' Matlab(TradeMark) scripts to create the usable 3-D weather data sets. Each data set includes radar re ectivity, water vapor, component winds, temperature, supercooled liquid water, turbulence, pressure, altitude, land elevation, relative humidity, and water phases. An open-source data processing program, wgrib2, is available from NOAA online, and is used along with Matlab scripts. These scripts are described with sucient detail to make future modi cations. These software tools have been used to generate 3-D weather data for various RFD experiments.

  9. Determination of key parameters of SEU occurrence using 3-D full cell SRAM simulations

    SciTech Connect

    Roche, P.; Palau, J.M.; Bruguier, G.; Tavernier, C.; Ecoffet, R.; Gasiot, J.

    1999-12-01

    A 3-D entire SRAM cell, based on a 0.35-{micro}m current CMOS technology, is simulated in this work with a DEVICE simulator. The transient current, resulting from a heavy ion strike in the most sensitive region of the cell, is studied as a function of the LET value, the cell layout and the ion penetration depth. A definition of the critical charge is proposed and two new methods are presented to compute this basic amount of charge only using SPICE simulations. Numerical applications are performed with two different generations of submicron CMOS technologies, including the determination of the sensitive thicknesses.

  10. Parallel implementation of 3D FFT with volumetric decomposition schemes for efficient molecular dynamics simulations

    NASA Astrophysics Data System (ADS)

    Jung, Jaewoon; Kobayashi, Chigusa; Imamura, Toshiyuki; Sugita, Yuji

    2016-03-01

    Three-dimensional Fast Fourier Transform (3D FFT) plays an important role in a wide variety of computer simulations and data analyses, including molecular dynamics (MD) simulations. In this study, we develop hybrid (MPI+OpenMP) parallelization schemes of 3D FFT based on two new volumetric decompositions, mainly for the particle mesh Ewald (PME) calculation in MD simulations. In one scheme, (1d_Alltoall), five all-to-all communications in one dimension are carried out, and in the other, (2d_Alltoall), one two-dimensional all-to-all communication is combined with two all-to-all communications in one dimension. 2d_Alltoall is similar to the conventional volumetric decomposition scheme. We performed benchmark tests of 3D FFT for the systems with different grid sizes using a large number of processors on the K computer in RIKEN AICS. The two schemes show comparable performances, and are better than existing 3D FFTs. The performances of 1d_Alltoall and 2d_Alltoall depend on the supercomputer network system and number of processors in each dimension. There is enough leeway for users to optimize performance for their conditions. In the PME method, short-range real-space interactions as well as long-range reciprocal-space interactions are calculated. Our volumetric decomposition schemes are particularly useful when used in conjunction with the recently developed midpoint cell method for short-range interactions, due to the same decompositions of real and reciprocal spaces. The 1d_Alltoall scheme of 3D FFT takes 4.7 ms to simulate one MD cycle for a virus system containing more than 1 million atoms using 32,768 cores on the K computer.

  11. SEM simulation for 2D and 3D inspection metrology and defect review

    NASA Astrophysics Data System (ADS)

    Levi, Shimon; Schwartsband, Ishai; Khristo, Sergey; Ivanchenko, Yan; Adan, Ofer

    2014-03-01

    Advanced SEM simulation has become a key element in the ability of SEM inspection, metrology and defect review to meet the challenges of advanced technologies. It grants additional capabilities to the end user, such as 3D height measurements, accurate virtual metrology, and supports Design Based Metrology to bridge the gap between design layout and SEM image. In this paper we present SEM simulations capabilities, which take into consideration all parts of the SEM physical and electronic path, interaction between Electron beam and material, multi perspective SEM imaging and shadowing derived from proximity effects caused by the interaction of the Secondary Electrons signal with neighboring pattern edges. Optimizing trade-off between simulation accuracy, calibration procedures and computational complexity, the simulation is running in real-time with minimum impact on throughput. Experiment results demonstrate Height measurement capacities, and CAD based simulated pattern is compared with SEM image to evaluate simulated pattern fidelity.

  12. 3D printing method for freeform fabrication of optical phantoms simulating heterogeneous biological tissue

    NASA Astrophysics Data System (ADS)

    Wang, Minjie; Shen, Shuwei; Yang, Jie; Dong, Erbao; Xu, Ronald

    2014-03-01

    The performance of biomedical optical imaging devices heavily relies on appropriate calibration. However, many of existing calibration phantoms for biomedical optical devices are based on homogenous materials without considering the multi-layer heterogeneous structures observed in biological tissue. Using such a phantom for optical calibration may result in measurement bias. To overcome this problem, we propose a 3D printing method for freeform fabrication of tissue simulating phantoms with multilayer heterogeneous structure. The phantom simulates not only the morphologic characteristics of biological tissue but also absorption and scattering properties. The printing system is based on a 3D motion platform with coordinated control of the DC motors. A special jet nozzle is designed to mix base, scattering, and absorption materials at different ratios. 3D tissue structures are fabricated through layer-by-layer printing with selective deposition of phantom materials of different ingredients. Different mixed ratios of base, scattering and absorption materials have been tested in order to optimize the printing outcome. A spectrometer and a tissue spectrophotometer are used for characterizing phantom absorption and scattering properties. The goal of this project is to fabricate skin tissue simulating phantoms as a traceable standard for the calibration of biomedical optical spectral devices.

  13. Electrochemical signal amplification for immunosensor based on 3D interdigitated array electrodes.

    PubMed

    Han, Donghoon; Kim, Yang-Rae; Kang, Chung Mu; Chung, Taek Dong

    2014-06-17

    We devised an electrochemical redox cycling based on three-dimensional interdigitated array (3D IDA) electrodes for signal amplification to enhance the sensitivity of chip-based immunosensors. The 3D IDA consists of two closely spaced parallel indium tin oxide (ITO) electrodes that are positioned not only on the bottom but also the ceiling, facing each other along a microfluidic channel. We investigated the signal intensities from various geometric configurations: Open-2D IDA, Closed-2D IDA, and 3D IDA through electrochemical experiments and finite-element simulations. The 3D IDA among the four different systems exhibited the greatest signal amplification resulting from efficient redox cycling of electroactive species confined in the microchannel so that the faradaic current was augmented by a factor of ∼100. We exploited the enhanced sensitivity of the 3D IDA to build up a chronocoulometric immunosensing platform based on the sandwich enzyme-linked immunosorbent assay (ELISA) protocol. The mouse IgGs on the 3D IDA showed much lower detection limits than on the Closed-2D IDA. The detection limit for mouse IgG measured using the 3D IDA was ∼10 fg/mL, while it was ∼100 fg/mL for the Closed-2D IDA. Moreover, the proposed immunosensor system with the 3D IDA successfully worked for clinical analysis as shown by the sensitive detection of cardiac troponin I in human serum down to 100 fg/mL. PMID:24842332

  14. 3D stress simulation and parameter design during twin-roll casting of 304 stainless steel based on the Anand model

    NASA Astrophysics Data System (ADS)

    Guo, Jing; Liu, Yuan-yuan; Liu, Li-gang; Zhang, Yue; Yang, Qing-xiang

    2014-07-01

    This study first investigated cracks on the surface of an actual steel strip. Formulating the Anand model in ANSYS software, we then simulated the stress field in the molten pool of type 304 stainless steel during the twin-roll casting process. Parameters affecting the stress distribution in the molten pool were analyzed in detail and optimized. After twin-roll casting, a large number of transgranular and intergranular cracks resided on the surface of the thin steel strip, and followed a tortuous path. In the molten pool, stress was enhanced at the exit and at the roller contact positions. The stress at the exit decreased with increasing casting speed and pouring temperature. To ensure high quality of the fabricated strips, the casting speed and pouring temperature should be controlled above 0.7 m/s and 1520°C, respectively.

  15. Blind watermark algorithm on 3D motion model based on wavelet transform

    NASA Astrophysics Data System (ADS)

    Qi, Hu; Zhai, Lang

    2013-12-01

    With the continuous development of 3D vision technology, digital watermark technology, as the best choice for copyright protection, has fused with it gradually. This paper proposed a blind watermark plan of 3D motion model based on wavelet transform, and made it loaded into the Vega real-time visual simulation system. Firstly, put 3D model into affine transform, and take the distance from the center of gravity to the vertex of 3D object in order to generate a one-dimensional discrete signal; then make this signal into wavelet transform to change its frequency coefficients and embed watermark, finally generate 3D motion model with watermarking. In fixed affine space, achieve the robustness in translation, revolving and proportion transforms. The results show that this approach has better performances not only in robustness, but also in watermark- invisibility.

  16. Structured Light-Based 3D Reconstruction System for Plants

    PubMed Central

    Nguyen, Thuy Tuong; Slaughter, David C.; Max, Nelson; Maloof, Julin N.; Sinha, Neelima

    2015-01-01

    Camera-based 3D reconstruction of physical objects is one of the most popular computer vision trends in recent years. Many systems have been built to model different real-world subjects, but there is lack of a completely robust system for plants.This paper presents a full 3D reconstruction system that incorporates both hardware structures (including the proposed structured light system to enhance textures on object surfaces) and software algorithms (including the proposed 3D point cloud registration and plant feature measurement). This paper demonstrates the ability to produce 3D models of whole plants created from multiple pairs of stereo images taken at different viewing angles, without the need to destructively cut away any parts of a plant. The ability to accurately predict phenotyping features, such as the number of leaves, plant height, leaf size and internode distances, is also demonstrated. Experimental results show that, for plants having a range of leaf sizes and a distance between leaves appropriate for the hardware design, the algorithms successfully predict phenotyping features in the target crops, with a recall of 0.97 and a precision of 0.89 for leaf detection and less than a 13-mm error for plant size, leaf size and internode distance. PMID:26230701

  17. Structured Light-Based 3D Reconstruction System for Plants.

    PubMed

    Nguyen, Thuy Tuong; Slaughter, David C; Max, Nelson; Maloof, Julin N; Sinha, Neelima

    2015-01-01

    Camera-based 3D reconstruction of physical objects is one of the most popular computer vision trends in recent years. Many systems have been built to model different real-world subjects, but there is lack of a completely robust system for plants. This paper presents a full 3D reconstruction system that incorporates both hardware structures (including the proposed structured light system to enhance textures on object surfaces) and software algorithms (including the proposed 3D point cloud registration and plant feature measurement). This paper demonstrates the ability to produce 3D models of whole plants created from multiple pairs of stereo images taken at different viewing angles, without the need to destructively cut away any parts of a plant. The ability to accurately predict phenotyping features, such as the number of leaves, plant height, leaf size and internode distances, is also demonstrated. Experimental results show that, for plants having a range of leaf sizes and a distance between leaves appropriate for the hardware design, the algorithms successfully predict phenotyping features in the target crops, with a recall of 0.97 and a precision of 0.89 for leaf detection and less than a 13-mm error for plant size, leaf size and internode distance. PMID:26230701

  18. Quantitative Analysis and Modeling of 3-D TSV-Based Power Delivery Architectures

    NASA Astrophysics Data System (ADS)

    He, Huanyu

    As 3-D technology enters the commercial production stage, it is critical to understand different 3-D power delivery architectures on the stacked ICs and packages with through-silicon vias (TSVs). Appropriate design, modeling, analysis, and optimization approaches of the 3-D power delivery system are of foremost significance and great practical interest to the semiconductor industry in general. Based on fundamental physics of 3-D integration components, the objective of this thesis work is to quantitatively analyze the power delivery for 3D-IC systems, develop appropriate physics-based models and simulation approaches, understand the key issues, and provide potential solutions for design of 3D-IC power delivery architectures. In this work, a hybrid simulation approach is adopted as the major approach along with analytical method to examine 3-D power networks. Combining electromagnetic (EM) tools and circuit simulators, the hybrid approach is able to analyze and model micrometer-scale components as well as centimeter-scale power delivery system with high accuracy and efficiency. The parasitic elements of the components on the power delivery can be precisely modeled by full-wave EM solvers. Stack-up circuit models for the 3-D power delivery networks (PDNs) are constructed through a partition and assembly method. With the efficiency advantage of the SPICE circuit simulation, the overall 3-D system power performance can be analyzed and the 3-D power delivery architectures can be evaluated in a short computing time. The major power delivery issues are the voltage drop (IR drop) and voltage noise. With a baseline of 3-D power delivery architecture, the on-chip PDNs of TSV-based chip stacks are modeled and analyzed for the IR drop and AC noise. The basic design factors are evaluated using the hybrid approach, such as the number of stacked chips, the number of TSVs, and the TSV arrangement. Analytical formulas are also developed to evaluate the IR drop in 3-D chip stack in

  19. Linking continuum mechanics and 3D discrete dislocation simulations

    SciTech Connect

    El-Azab, A. A.; Fivel, M.

    1998-10-18

    A technique is developed for linking the methods of discrete dislocation dynamics simulation and finite element to treat elasto-plasticity problems. The overall formulation views the plastically deforming crystal as an elastic crystal with continuously changing dislocation microstructure which is tracked by the numerical dynamics simulation. The FEM code needed in this regard is based on linear elasticity only. This formulation presented here is focused on a continuous updating of the outer shape of the crystal, for possible regeneration of the FEM mesh, and adjustment of the surface geometry, in particular the surface normal. The method is expected to be potentially applicable to the nano- indentation experiments, where the zone around the indenter-crystal contact undergoes significant permanent deformation, the rigorous determination of which is very important to the calculation of the indentation print area and in turn, the surface hardness. Furthermore, the technique is expected to account for the plastic history of the surface displacement under the indenter. Other potential applications are mentioned in the text.

  20. Development of discrete gas kinetic scheme for simulation of 3D viscous incompressible and compressible flows

    NASA Astrophysics Data System (ADS)

    Yang, L. M.; Shu, C.; Wang, Y.; Sun, Y.

    2016-08-01

    The sphere function-based gas kinetic scheme (GKS), which was presented by Shu and his coworkers [23] for simulation of inviscid compressible flows, is extended to simulate 3D viscous incompressible and compressible flows in this work. Firstly, we use certain discrete points to represent the spherical surface in the phase velocity space. Then, integrals along the spherical surface for conservation forms of moments, which are needed to recover 3D Navier-Stokes equations, are approximated by integral quadrature. The basic requirement is that these conservation forms of moments can be exactly satisfied by weighted summation of distribution functions at discrete points. It was found that the integral quadrature by eight discrete points on the spherical surface, which forms the D3Q8 discrete velocity model, can exactly match the integral. In this way, the conservative variables and numerical fluxes can be computed by weighted summation of distribution functions at eight discrete points. That is, the application of complicated formulations resultant from integrals can be replaced by a simple solution process. Several numerical examples including laminar flat plate boundary layer, 3D lid-driven cavity flow, steady flow through a 90° bending square duct, transonic flow around DPW-W1 wing and supersonic flow around NACA0012 airfoil are chosen to validate the proposed scheme. Numerical results demonstrate that the present scheme can provide reasonable numerical results for 3D viscous flows.

  1. Visual fatigue evaluation based on depth in 3D videos

    NASA Astrophysics Data System (ADS)

    Wang, Feng-jiao; Sang, Xin-zhu; Liu, Yangdong; Shi, Guo-zhong; Xu, Da-xiong

    2013-08-01

    In recent years, 3D technology has become an emerging industry. However, visual fatigue always impedes the development of 3D technology. In this paper we propose some factors affecting human perception of depth as new quality metrics. These factors are from three aspects of 3D video--spatial characteristics, temporal characteristics and scene movement characteristics. They play important roles for the viewer's visual perception. If there are many objects with a certain velocity and the scene changes fast, viewers will feel uncomfortable. In this paper, we propose a new algorithm to calculate the weight values of these factors and analyses their effect on visual fatigue.MSE (Mean Square Error) of different blocks is taken into consideration from the frame and inter-frame for 3D stereoscopic videos. The depth frame is divided into a number of blocks. There are overlapped and sharing pixels (at half of the block) in the horizontal and vertical direction. Ignoring edge information of objects in the image can be avoided. Then the distribution of all these data is indicated by kurtosis with regard of regions which human eye may mainly gaze at. Weight values can be gotten by the normalized kurtosis. When the method is used for individual depth, spatial variation can be achieved. When we use it in different frames between current and previous one, we can get temporal variation and scene movement variation. Three factors above are linearly combined, so we can get objective assessment value of 3D videos directly. The coefficients of three factors can be estimated based on the liner regression. At last, the experimental results show that the proposed method exhibits high correlation with subjective quality assessment results.

  2. Real-time 3D radiation risk assessment supporting simulation of work in nuclear environments.

    PubMed

    Szőke, I; Louka, M N; Bryntesen, T R; Bratteli, J; Edvardsen, S T; RøEitrheim, K K; Bodor, K

    2014-06-01

    This paper describes the latest developments at the Institute for Energy Technology (IFE) in Norway, in the field of real-time 3D (three-dimensional) radiation risk assessment for the support of work simulation in nuclear environments. 3D computer simulation can greatly facilitate efficient work planning, briefing, and training of workers. It can also support communication within and between work teams, and with advisors, regulators, the media and public, at all the stages of a nuclear installation's lifecycle. Furthermore, it is also a beneficial tool for reviewing current work practices in order to identify possible gaps in procedures, as well as to support the updating of international recommendations, dissemination of experience, and education of the current and future generation of workers.IFE has been involved in research and development into the application of 3D computer simulation and virtual reality (VR) technology to support work in radiological environments in the nuclear sector since the mid 1990s. During this process, two significant software tools have been developed, the VRdose system and the Halden Planner, and a number of publications have been produced to contribute to improving the safety culture in the nuclear industry.This paper describes the radiation risk assessment techniques applied in earlier versions of the VRdose system and the Halden Planner, for visualising radiation fields and calculating dose, and presents new developments towards implementing a flexible and up-to-date dosimetric package in these 3D software tools, based on new developments in the field of radiation protection. The latest versions of these 3D tools are capable of more accurate risk estimation, permit more flexibility via a range of user choices, and are applicable to a wider range of irradiation situations than their predecessors. PMID:24727389

  3. 3-D model-based tracking for UAV indoor localization.

    PubMed

    Teulière, Céline; Marchand, Eric; Eck, Laurent

    2015-05-01

    This paper proposes a novel model-based tracking approach for 3-D localization. One main difficulty of standard model-based approach lies in the presence of low-level ambiguities between different edges. In this paper, given a 3-D model of the edges of the environment, we derive a multiple hypotheses tracker which retrieves the potential poses of the camera from the observations in the image. We also show how these candidate poses can be integrated into a particle filtering framework to guide the particle set toward the peaks of the distribution. Motivated by the UAV indoor localization problem where GPS signal is not available, we validate the algorithm on real image sequences from UAV flights. PMID:25099967

  4. Stability of 3D Textile Composite Reinforcement Simulations: Solutions to Spurious Transverse Modes

    NASA Astrophysics Data System (ADS)

    Mathieu, S.; Hamila, N.; Dupé, F.; Descamps, C.; Boisse, P.

    2016-08-01

    The simulation of thick 3D composite reinforcement forming brings to light new modeling challenges. The specific anisotropic material behavior due to the possible slippage between fibers induces, among other phenomena, the development of spurious transverse modes in bending-dominated 3D simulations. To obtain coherent finite element responses, two solutions are proposed. The first one uses a simple assumed strain formulation usually prescribed to prevent volumetric locking. This solution avoids spurious transverse modes by stiffening of the hourglass modes. Nevertheless the deformation obtained by this approach still suffers from the inability of the standard continuum mechanics of Cauchy to describe fibrous material deformation. The second proposed approach is based on the introduction of a bending stiffness which both avoids the spurious transverse modes and also improves the global behavior of the element formulation by enriching the underlying continuum. To emphasize the differences between different formulations, element stiffnesses are explicitly calculated and compared.

  5. Stability of 3D Textile Composite Reinforcement Simulations: Solutions to Spurious Transverse Modes

    NASA Astrophysics Data System (ADS)

    Mathieu, S.; Hamila, N.; Dupé, F.; Descamps, C.; Boisse, P.

    2016-03-01

    The simulation of thick 3D composite reinforcement forming brings to light new modeling challenges. The specific anisotropic material behavior due to the possible slippage between fibers induces, among other phenomena, the development of spurious transverse modes in bending-dominated 3D simulations. To obtain coherent finite element responses, two solutions are proposed. The first one uses a simple assumed strain formulation usually prescribed to prevent volumetric locking. This solution avoids spurious transverse modes by stiffening of the hourglass modes. Nevertheless the deformation obtained by this approach still suffers from the inability of the standard continuum mechanics of Cauchy to describe fibrous material deformation. The second proposed approach is based on the introduction of a bending stiffness which both avoids the spurious transverse modes and also improves the global behavior of the element formulation by enriching the underlying continuum. To emphasize the differences between different formulations, element stiffnesses are explicitly calculated and compared.

  6. 3D Immersive Patient Simulators and Their Impact on Learning Success: A Thematic Review

    PubMed Central

    Wahba, Roger; Chang, De-Hua; Plum, Patrick; Hölscher, Arnulf H; Stippel, Dirk L

    2015-01-01

    Background Immersive patient simulators (IPSs) combine the simulation of virtual patients with a three-dimensional (3D) environment and, thus, allow an illusionary immersion into a synthetic world, similar to computer games. Playful learning in a 3D environment is motivating and allows repetitive training and internalization of medical workflows (ie, procedural knowledge) without compromising real patients. The impact of this innovative educational concept on learning success requires review of feasibility and validity. Objective It was the aim of this paper to conduct a survey of all immersive patient simulators currently available. In addition, we address the question of whether the use of these simulators has an impact on knowledge gain by summarizing the existing validation studies. Methods A systematic literature search via PubMed was performed using predefined inclusion criteria (ie, virtual worlds, focus on education of medical students, validation testing) to identify all available simulators. Validation testing was defined as the primary end point. Results There are currently 13 immersive patient simulators available. Of these, 9 are Web-based simulators and represent feasibility studies. None of these simulators are used routinely for student education. The workstation-based simulators are commercially driven and show a higher quality in terms of graphical quality and/or data content. Out of the studies, 1 showed a positive correlation between simulated content and real content (ie, content validity). There was a positive correlation between the outcome of simulator training and alternative training methods (ie, concordance validity), and a positive coherence between measured outcome and future professional attitude and performance (ie, predictive validity). Conclusions IPSs can promote learning and consolidation of procedural knowledge. The use of immersive patient simulators is still marginal, and technical and educational approaches are heterogeneous

  7. 3D range scan enhancement using image-based methods

    NASA Astrophysics Data System (ADS)

    Herbort, Steffen; Gerken, Britta; Schugk, Daniel; Wöhler, Christian

    2013-10-01

    This paper addresses the problem of 3D surface scan refinement, which is desirable due to noise, outliers, and missing measurements being present in the 3D surfaces obtained with a laser scanner. We present a novel algorithm for the fusion of absolute laser scanner depth profiles and photometrically estimated surface normal data, which yields a noise-reduced and highly detailed depth profile with large scale shape robustness. In contrast to other approaches published in the literature, the presented algorithm (1) regards non-Lambertian surfaces, (2) simultaneously computes surface reflectance (i.e. BRDF) parameters required for 3D reconstruction, (3) models pixelwise incident light and viewing directions, and (4) accounts for interreflections. The algorithm as such relies on the minimization of a three-component error term, which penalizes intensity deviations, integrability deviations, and deviations from the known large-scale surface shape. The solution of the error minimization is obtained iteratively based on a calculus of variations. BRDF parameters are estimated by initially reducing and then iteratively refining the optical resolution, which provides the required robust data basis. The 3D reconstruction of concave surface regions affected by interreflections is improved by compensating global illumination in the image data. The algorithm is evaluated based on eight objects with varying albedos and reflectance behaviors (diffuse, specular, metallic). The qualitative evaluation shows a removal of outliers and a strong reduction of noise, while the large scale shape is preserved. Fine surface details Which are previously not contained in the surface scans, are incorporated through using image data. The algorithm is evaluated with respect to its absolute accuracy using two caliper objects of known shape, and based on synthetically generated data. The beneficial effect of interreflection compensation on the reconstruction accuracy is evaluated quantitatively in a

  8. A Real-time 3D Visualization of Global MHD Simulation for Space Weather Forecasting

    NASA Astrophysics Data System (ADS)

    Murata, K.; Matsuoka, D.; Kubo, T.; Shimazu, H.; Tanaka, T.; Fujita, S.; Watari, S.; Miyachi, H.; Yamamoto, K.; Kimura, E.; Ishikura, S.

    2006-12-01

    Recently, many satellites for communication networks and scientific observation are launched in the vicinity of the Earth (geo-space). The electromagnetic (EM) environments around the spacecraft are always influenced by the solar wind blowing from the Sun and induced electromagnetic fields. They occasionally cause various troubles or damages, such as electrification and interference, to the spacecraft. It is important to forecast the geo-space EM environment as well as the ground weather forecasting. Owing to the recent remarkable progresses of super-computer technologies, numerical simulations have become powerful research methods in the solar-terrestrial physics. For the necessity of space weather forecasting, NICT (National Institute of Information and Communications Technology) has developed a real-time global MHD simulation system of solar wind-magnetosphere-ionosphere couplings, which has been performed on a super-computer SX-6. The real-time solar wind parameters from the ACE spacecraft at every one minute are adopted as boundary conditions for the simulation. Simulation results (2-D plots) are updated every 1 minute on a NICT website. However, 3D visualization of simulation results is indispensable to forecast space weather more accurately. In the present study, we develop a real-time 3D webcite for the global MHD simulations. The 3-D visualization results of simulation results are updated every 20 minutes in the following three formats: (1)Streamlines of magnetic field lines, (2)Isosurface of temperature in the magnetosphere and (3)Isoline of conductivity and orthogonal plane of potential in the ionosphere. For the present study, we developed a 3-D viewer application working on Internet Explorer browser (ActiveX) is implemented, which was developed on the AVS/Express. Numerical data are saved in the HDF5 format data files every 1 minute. Users can easily search, retrieve and plot past simulation results (3D visualization data and numerical data) by using

  9. Gesture Interaction Browser-Based 3D Molecular Viewer.

    PubMed

    Virag, Ioan; Stoicu-Tivadar, Lăcrămioara; Crişan-Vida, Mihaela

    2016-01-01

    The paper presents an open source system that allows the user to interact with a 3D molecular viewer using associated hand gestures for rotating, scaling and panning the rendered model. The novelty of this approach is that the entire application is browser-based and doesn't require installation of third party plug-ins or additional software components in order to visualize the supported chemical file formats. This kind of solution is suitable for instruction of users in less IT oriented environments, like medicine or chemistry. For rendering various molecular geometries our team used GLmol (a molecular viewer written in JavaScript). The interaction with the 3D models is made with Leap Motion controller that allows real-time tracking of the user's hand gestures. The first results confirmed that the resulting application leads to a better way of understanding various types of translational bioinformatics related problems in both biomedical research and education. PMID:27350455

  10. 3D GIS spatial operation based on extended Euler operators

    NASA Astrophysics Data System (ADS)

    Xu, Hongbo; Lu, Guonian; Sheng, Yehua; Zhou, Liangchen; Guo, Fei; Shang, Zuoyan; Wang, Jing

    2008-10-01

    The implementation of 3 dimensions spatial operations, based on certain data structure, has a lack of universality and is not able to treat with non-manifold cases, at present. ISO/DIS 19107 standard just presents the definition of Boolean operators and set operators for topological relationship query, and OGC GeoXACML gives formal definitions for several set functions without implementation detail. Aiming at these problems, based mathematical foundation on cell complex theory, supported by non-manifold data structure and using relevant research in the field of non-manifold geometry modeling for reference, firstly, this paper according to non-manifold Euler-Poincaré formula constructs 6 extended Euler operators and inverse operators to carry out creating, updating and deleting 3D spatial elements, as well as several pairs of supplementary Euler operators to convenient for implementing advanced functions. Secondly, we change topological element operation sequence of Boolean operation and set operation as well as set functions defined in GeoXACML into combination of extended Euler operators, which separates the upper functions and lower data structure. Lastly, we develop underground 3D GIS prototype system, in which practicability and credibility of extended Euler operators faced to 3D GIS presented by this paper are validated.

  11. Enhancing Pre-Service Teachers' Awareness to Pupils' Test-Anxiety with 3D Immersive Simulation

    ERIC Educational Resources Information Center

    Passig, David; Moshe, Ronit

    2008-01-01

    This study investigated whether participating in a 3D immersive virtual reality world simulating the experience of test-anxiety would affect preservice teachers' awareness to the phenomenon. Ninety subjects participated in this study, and were divided into three groups. The experimental group experienced a 3D immersive simulation which made…

  12. Full-Scale 3D Simulation of a sputtering magnetron

    NASA Astrophysics Data System (ADS)

    Walton, C. C.; Wilks, S. C.; Ayyaswamy, V.; Verboncoeur, J. P.; Parks, P. B.; Wu, W.; Zhou, C. D.; Stoltz, P. H.

    2010-11-01

    PIC simulations have been used to study ion energy distributions in magnetron plasmas, and coupled with other simulations to relate plasma processes to properties of sputtered films. The plasma is weakly ionized and exchanges heat with the background gas by scattering and charge-exchange reactions. Resulting heating of neutral background gas up to ˜1200K, leading to ˜5X rarefaction and increased plasma impedance, was studied with coupled PIC and Direct Simulation Monte Carlo (DSMC) simulations. Effects of scaling the PIC simulations from 0.1X to 1X physical size, and modifying the plasma potential by a dc substrate bias, will be presented. Comparison to experimental I-V relations and importance for roughness and density of sputtered films will be discussed.

  13. Binding affinity prediction of novel estrogen receptor ligands using receptor-based 3-D QSAR methods.

    PubMed

    Sippl, Wolfgang

    2002-12-01

    We have recently reported the development of a 3-D QSAR model for estrogen receptor ligands showing a significant correlation between calculated molecular interaction fields and experimentally measured binding affinity. The ligand alignment obtained from docking simulations was taken as basis for a comparative field analysis applying the GRID/GOLPE program. Using the interaction field derived with a water probe and applying the smart region definition (SRD) variable selection procedure, a significant and robust model was obtained (q(2)(LOO)=0.921, SDEP=0.345). To further analyze the robustness and the predictivity of the established model several recently developed estrogen receptor ligands were selected as external test set. An excellent agreement between predicted and experimental binding data was obtained indicated by an external SDEP of 0.531. Two other traditionally used prediction techniques were applied in order to check the performance of the receptor-based 3-D QSAR procedure. The interaction energies calculated on the basis of receptor-ligand complexes were correlated with experimentally observed affinities. Also ligand-based 3-D QSAR models were generated using program FlexS. The interaction energy-based model, as well as the ligand-based 3-D QSAR models yielded models with lower predictivity. The comparison with the interaction energy-based model and with the ligand-based 3-D QSAR models, respectively, indicates that the combination of receptor-based and 3-D QSAR methods is able to improve the quality of prediction. PMID:12413831

  14. Simple 3-D stimulus for motion parallax and its simulation.

    PubMed

    Ono, Hiroshi; Chornenkyy, Yevgen; D'Amour, Sarah

    2013-01-01

    Simulation of a given stimulus situation should produce the same perception as the original. Rogers et al (2009 Perception 38 907-911) simulated Wheeler's (1982, PhD thesis, Rutgers University, NJ) motion parallax stimulus and obtained quite different perceptions. Wheeler's observers were unable to reliably report the correct direction of depth, whereas Rogers's were. With three experiments we explored the possible reasons for the discrepancy. Our results suggest that Rogers was able to see depth from the simulation partly due to his experience seeing depth with random dot surfaces. PMID:23964382

  15. Neuromorphic Event-Based 3D Pose Estimation

    PubMed Central

    Reverter Valeiras, David; Orchard, Garrick; Ieng, Sio-Hoi; Benosman, Ryad B.

    2016-01-01

    Pose estimation is a fundamental step in many artificial vision tasks. It consists of estimating the 3D pose of an object with respect to a camera from the object's 2D projection. Current state of the art implementations operate on images. These implementations are computationally expensive, especially for real-time applications. Scenes with fast dynamics exceeding 30–60 Hz can rarely be processed in real-time using conventional hardware. This paper presents a new method for event-based 3D object pose estimation, making full use of the high temporal resolution (1 μs) of asynchronous visual events output from a single neuromorphic camera. Given an initial estimate of the pose, each incoming event is used to update the pose by combining both 3D and 2D criteria. We show that the asynchronous high temporal resolution of the neuromorphic camera allows us to solve the problem in an incremental manner, achieving real-time performance at an update rate of several hundreds kHz on a conventional laptop. We show that the high temporal resolution of neuromorphic cameras is a key feature for performing accurate pose estimation. Experiments are provided showing the performance of the algorithm on real data, including fast moving objects, occlusions, and cases where the neuromorphic camera and the object are both in motion. PMID:26834547

  16. Facial-paralysis diagnostic system based on 3D reconstruction

    NASA Astrophysics Data System (ADS)

    Khairunnisaa, Aida; Basah, Shafriza Nisha; Yazid, Haniza; Basri, Hassrizal Hassan; Yaacob, Sazali; Chin, Lim Chee

    2015-05-01

    The diagnostic process of facial paralysis requires qualitative assessment for the classification and treatment planning. This result is inconsistent assessment that potential affect treatment planning. We developed a facial-paralysis diagnostic system based on 3D reconstruction of RGB and depth data using a standard structured-light camera - Kinect 360 - and implementation of Active Appearance Models (AAM). We also proposed a quantitative assessment for facial paralysis based on triangular model. In this paper, we report on the design and development process, including preliminary experimental results. Our preliminary experimental results demonstrate the feasibility of our quantitative assessment system to diagnose facial paralysis.

  17. Simple tools for simulating phased array focal laws on 3D solids

    NASA Astrophysics Data System (ADS)

    Weber, Walter H.; Mair, H. Douglas; Frazer, Leigh

    2001-04-01

    This paper reports our progress on the development of a three-dimensional raytracing program that can simulate the focal laws of a phased array system. The modeled transducer is divided into elements of a given length, width and inter-element gap distance. Each focal law to be modeled requires a steering angle, focal length and selection of which groups of elements are transmitting and receiving. Electronic scanning is simulated by stepping through a series of predefined focal laws. The program phase shifts and sums the received rays at each element based on the properties of the currently-active focal law. Simulated A-scans are constructed from the received rays which appear animated as the beam is swept. Beam profiles can also be generated that show the primary forward beam and energy in the side lobes. The work is based on Imagine3D ultrasonic simulation software and the dedicated efforts of Doug Mair and Leigh Frazer.

  18. Tensor3D: A computer graphics program to simulate 3D real-time deformation and visualization of geometric bodies

    NASA Astrophysics Data System (ADS)

    Pallozzi Lavorante, Luca; Dirk Ebert, Hans

    2008-07-01

    Tensor3D is a geometric modeling program with the capacity to simulate and visualize in real-time the deformation, specified through a tensor matrix and applied to triangulated models representing geological bodies. 3D visualization allows the study of deformational processes that are traditionally conducted in 2D, such as simple and pure shears. Besides geometric objects that are immediately available in the program window, the program can read other models from disk, thus being able to import objects created with different open-source or proprietary programs. A strain ellipsoid and a bounding box are simultaneously shown and instantly deformed with the main object. The principal axes of strain are visualized as well to provide graphical information about the orientation of the tensor's normal components. The deformed models can also be saved, retrieved later and deformed again, in order to study different steps of progressive strain, or to make this data available to other programs. The shape of stress ellipsoids and the corresponding Mohr circles defined by any stress tensor can also be represented. The application was written using the Visualization ToolKit, a powerful scientific visualization library in the public domain. This development choice, allied to the use of the Tcl/Tk programming language, which is independent on the host computational platform, makes the program a useful tool for the study of geometric deformations directly in three dimensions in teaching as well as research activities.

  19. OptogenSIM: a 3D Monte Carlo simulation platform for light delivery design in optogenetics

    PubMed Central

    Liu, Yuming; Jacques, Steven L.; Azimipour, Mehdi; Rogers, Jeremy D.; Pashaie, Ramin; Eliceiri, Kevin W.

    2015-01-01

    Optimizing light delivery for optogenetics is critical in order to accurately stimulate the neurons of interest while reducing nonspecific effects such as tissue heating or photodamage. Light distribution is typically predicted using the assumption of tissue homogeneity, which oversimplifies light transport in heterogeneous brain. Here, we present an open-source 3D simulation platform, OptogenSIM, which eliminates this assumption. This platform integrates a voxel-based 3D Monte Carlo model, generic optical property models of brain tissues, and a well-defined 3D mouse brain tissue atlas. The application of this platform in brain data models demonstrates that brain heterogeneity has moderate to significant impact depending on application conditions. Estimated light density contours can show the region of any specified power density in the 3D brain space and thus can help optimize the light delivery settings, such as the optical fiber position, fiber diameter, fiber numerical aperture, light wavelength and power. OptogenSIM is freely available and can be easily adapted to incorporate additional brain atlases. PMID:26713200

  20. OptogenSIM: a 3D Monte Carlo simulation platform for light delivery design in optogenetics.

    PubMed

    Liu, Yuming; Jacques, Steven L; Azimipour, Mehdi; Rogers, Jeremy D; Pashaie, Ramin; Eliceiri, Kevin W

    2015-12-01

    Optimizing light delivery for optogenetics is critical in order to accurately stimulate the neurons of interest while reducing nonspecific effects such as tissue heating or photodamage. Light distribution is typically predicted using the assumption of tissue homogeneity, which oversimplifies light transport in heterogeneous brain. Here, we present an open-source 3D simulation platform, OptogenSIM, which eliminates this assumption. This platform integrates a voxel-based 3D Monte Carlo model, generic optical property models of brain tissues, and a well-defined 3D mouse brain tissue atlas. The application of this platform in brain data models demonstrates that brain heterogeneity has moderate to significant impact depending on application conditions. Estimated light density contours can show the region of any specified power density in the 3D brain space and thus can help optimize the light delivery settings, such as the optical fiber position, fiber diameter, fiber numerical aperture, light wavelength and power. OptogenSIM is freely available and can be easily adapted to incorporate additional brain atlases. PMID:26713200

  1. Fast and Precise 3D Fluorophore Localization based on Gradient Fitting

    NASA Astrophysics Data System (ADS)

    Ma, Hongqiang; Xu, Jianquan; Jin, Jingyi; Gao, Ying; Lan, Li; Liu, Yang

    2015-09-01

    Astigmatism imaging approach has been widely used to encode the fluorophore’s 3D position in single-particle tracking and super-resolution localization microscopy. Here, we present a new high-speed localization algorithm based on gradient fitting to precisely decode the 3D subpixel position of the fluorophore. This algebraic algorithm determines the center of the fluorescent emitter by finding the position with the best-fit gradient direction distribution to the measured point spread function (PSF), and can retrieve the 3D subpixel position of the fluorophore in a single iteration. Through numerical simulation and experiments with mammalian cells, we demonstrate that our algorithm yields comparable localization precision to the traditional iterative Gaussian function fitting (GF) based method, while exhibits over two orders-of-magnitude faster execution speed. Our algorithm is a promising high-speed analyzing method for 3D particle tracking and super-resolution localization microscopy.

  2. Fast and Precise 3D Fluorophore Localization based on Gradient Fitting

    PubMed Central

    Ma, Hongqiang; Xu, Jianquan; Jin, Jingyi; Gao, Ying; Lan, Li; Liu, Yang

    2015-01-01

    Astigmatism imaging approach has been widely used to encode the fluorophore’s 3D position in single-particle tracking and super-resolution localization microscopy. Here, we present a new high-speed localization algorithm based on gradient fitting to precisely decode the 3D subpixel position of the fluorophore. This algebraic algorithm determines the center of the fluorescent emitter by finding the position with the best-fit gradient direction distribution to the measured point spread function (PSF), and can retrieve the 3D subpixel position of the fluorophore in a single iteration. Through numerical simulation and experiments with mammalian cells, we demonstrate that our algorithm yields comparable localization precision to the traditional iterative Gaussian function fitting (GF) based method, while exhibits over two orders-of-magnitude faster execution speed. Our algorithm is a promising high-speed analyzing method for 3D particle tracking and super-resolution localization microscopy. PMID:26390959

  3. Simulation and experimental studies of three-dimensional (3D) image reconstruction from insufficient sampling data based on compressed-sensing theory for potential applications to dental cone-beam CT

    NASA Astrophysics Data System (ADS)

    Je, U. K.; Lee, M. S.; Cho, H. S.; Hong, D. K.; Park, Y. O.; Park, C. K.; Cho, H. M.; Choi, S. I.; Woo, T. H.

    2015-06-01

    In practical applications of three-dimensional (3D) tomographic imaging, there are often challenges for image reconstruction from insufficient sampling data. In computed tomography (CT), for example, image reconstruction from sparse views and/or limited-angle (<360°) views would enable fast scanning with reduced imaging doses to the patient. In this study, we investigated and implemented a reconstruction algorithm based on the compressed-sensing (CS) theory, which exploits the sparseness of the gradient image with substantially high accuracy, for potential applications to low-dose, high-accurate dental cone-beam CT (CBCT). We performed systematic simulation works to investigate the image characteristics and also performed experimental works by applying the algorithm to a commercially-available dental CBCT system to demonstrate its effectiveness for image reconstruction in insufficient sampling problems. We successfully reconstructed CBCT images of superior accuracy from insufficient sampling data and evaluated the reconstruction quality quantitatively. Both simulation and experimental demonstrations of the CS-based reconstruction from insufficient data indicate that the CS-based algorithm can be applied directly to current dental CBCT systems for reducing the imaging doses and further improving the image quality.

  4. M3D (Media 3D): a new programming language for web-based virtual reality in E-Learning and Edutainment

    NASA Astrophysics Data System (ADS)

    Chakaveh, Sepideh; Skaley, Detlef; Laine, Patricia; Haeger, Ralf; Maad, Soha

    2003-01-01

    Today, interactive multimedia educational systems are well established, as they prove useful instruments to enhance one's learning capabilities. Hitherto, the main difficulty with almost all E-Learning systems was latent in the rich media implementation techniques. This meant that each and every system should be created individually as reapplying the media, be it only a part, or the whole content was not directly possible, as everything must be applied mechanically i.e. by hand. Consequently making E-learning systems exceedingly expensive to generate, both in time and money terms. Media-3D or M3D is a new platform independent programming language, developed at the Fraunhofer Institute Media Communication to enable visualisation and simulation of E-Learning multimedia content. M3D is an XML-based language, which is capable of distinguishing between the3D models from that of the 3D scenes, as well as handling provisions for animations, within the programme. Here we give a technical account of M3D programming language and briefly describe two specific application scenarios where M3D is applied to create virtual reality E-Learning content for training of technical personnel.

  5. Simulation domain size requirements for elastic response of 3D polycrystalline materials

    NASA Astrophysics Data System (ADS)

    Ozturk, Tugce; Stein, Clayton; Pokharel, Reeju; Hefferan, Christopher; Tucker, Harris; Jha, Sushant; John, Reji; Lebensohn, Ricardo A.; Kenesei, Peter; Suter, Robert M.; Rollett, Anthony D.

    2016-01-01

    A fast Fourier transform (FFT) based spectral algorithm is used to compute the full field mechanical response of polycrystalline microstructures. The field distributions in a specific region are used to determine the sensitivity of the method to the number of surrounding grains through quantification of the divergence of the field values from the largest simulation domain, as successively smaller surrounding volumes are included in the simulation. The analysis considers a mapped 3D structure where the location of interest is taken to be a particular pair of surface grains that enclose a small fatigue crack, and synthetically created statistically representative microstructures to further investigate the effect of anisotropy, loading condition, loading direction, and texture. The synthetic structures are generated via DREAM3D and the measured material is a cyclically loaded, Ni-based, low solvus high refractory (LSHR) superalloy that was characterized via 3D high energy x-ray diffraction microscopy (HEDM). Point-wise comparison of distributions in the grain pairs shows that, in order to obtain a Pearson correlation coefficient larger than 99%, the domain must extend to at least the third nearest neighbor. For an elastic FFT calculation, the stress-strain distributions are not sensitive to the shape of the domain. The main result is that convergence can be specified in terms of the number of grains surrounding a region of interest.

  6. Understanding fiber mixture by simulation in 3D Polarized Light Imaging.

    PubMed

    Dohmen, Melanie; Menzel, Miriam; Wiese, Hendrik; Reckfort, Julia; Hanke, Frederike; Pietrzyk, Uwe; Zilles, Karl; Amunts, Katrin; Axer, Markus

    2015-05-01

    3D Polarized Light Imaging (3D-PLI) is a neuroimaging technique that has opened up new avenues to study the complex architecture of nerve fibers in postmortem brains. The spatial orientations of the fibers are derived from birefringence measurements of unstained histological brain sections that are interpreted by a voxel-based analysis. This, however, implies that a single fiber orientation vector is obtained for each voxel and reflects the net effect of all comprised fibers. The mixture of various fiber orientations within an individual voxel is a priori not accessible by a standard 3D-PLI measurement. In order to better understand the effects of fiber mixture on the measured 3D-PLI signal and to improve the interpretation of real data, we have developed a simulation method referred to as SimPLI. By means of SimPLI, it is possible to reproduce the entire 3D-PLI analysis starting from synthetic fiber models in user-defined arrangements and ending with measurement-like tissue images. For the simulation, each synthetic fiber is considered as an optical retarder, i.e., multiple fibers within one voxel are described by multiple retarder elements. The investigation of different synthetic crossing fiber arrangements generated with SimPLI demonstrated that the derived fiber orientations are strongly influenced by the relative mixture of crossing fibers. In case of perpendicularly crossing fibers, for example, the derived fiber direction corresponds to the predominant fiber direction. The derived fiber inclination turned out to be not only influenced by myelin density but also systematically overestimated due to signal attenuation. Similar observations were made for synthetic models of optic chiasms of a human and a hooded seal which were opposed to experimental 3D-PLI data sets obtained from the chiasms of both species. Our study showed that SimPLI is a powerful method able to test hypotheses on the underlying fiber structure of brain tissue and, therefore, to improve the

  7. 3D Simulations of methane convective storms on Titan's atmosphere

    NASA Astrophysics Data System (ADS)

    Hueso, R.; Sánchez-Lavega, A.

    2005-08-01

    The arrival of the Cassini/Huygens mission to Titan has opened an unprecedented opportunity to study the atmosphere of this satellite. Under the pressure-temperature conditions on Titan, methane, a large atmospheric component amounting perhaps to a 3-5% of the atmosphere, is close to its triple point, potentially playing a similar role as water on Earth. The Huygens probe has shown a terrain shaped by erosion of probably liquid origin, suggestive of past rain. On the other hand, Voyager IRIS spectroscopic observations of Titan imply a saturated atmosphere of methane (amounting perhaps to 150 covered by methane clouds, if we think on Earth meteorology. However, observations from Earth and Cassini have shown that clouds are localized, transient and fast evolving, in particular in the South Pole (currently in its summer season). This might imply a lack of widespread presence on Titan of nuclei where methane could initiate condensation and particle growth with subsequent precipitation. We investigate different scenarios of moist convective storms on Titan using a complete 3D atmospheric model that incorporates a full microphysics treatment required to study cloud formation processes under a saturated atmosphere with low concentration of condensation nuclei. We study local convective development under a variety of atmospheric conditions: sub-saturation, super-saturation, abundances of condensation nuclei fall, condensation nuclei lifted from the ground or gently falling from the stratosphere. We show that under the appropriate circumstances, precipitation rates comparable to typical tropical storms on Earth can be found. Acknowledgements: This work has been funded by Spanish MCYT PNAYA2003-03216, fondos FEDER and Grupos UPV 15946/2004. R. Hueso acknowledges a post-doc fellowship from Gobierno Vasco.

  8. SIERRA - A 3-D device simulator for reliability modeling

    NASA Astrophysics Data System (ADS)

    Chern, Jue-Hsien; Arledge, Lawrence A., Jr.; Yang, Ping; Maeda, John T.

    1989-05-01

    SIERRA is a three-dimensional general-purpose semiconductor-device simulation program which serves as a foundation for investigating integrated-circuit (IC) device and reliability issues. This program solves the Poisson and continuity equations in silicon under dc, transient, and small-signal conditions. Executing on a vector/parallel minisupercomputer, SIERRA utilizes a matrix solver which uses an incomplete LU (ILU) preconditioned conjugate gradient square (CGS, BCG) method. The ILU-CGS method provides a good compromise between memory size and convergence rate. The authors have observed a 5x to 7x speedup over standard direct methods in simulations of transient problems containing highly coupled Poisson and continuity equations such as those found in reliability-oriented simulations. The application of SIERRA to parasitic CMOS latchup and dynamic random-access memory single-event-upset studies is described.

  9. 3-D Spreadsheet Simulation of a Modern Particle Detector

    ERIC Educational Resources Information Center

    Scott, Alan J.

    2004-01-01

    A spreadsheet simulation of a modern particle detector has been developed and can be readily used as an instructional tool in the physics classroom. The spreadsheet creates a three-dimensional model that can be rotated and helical trajectories can be highlighted. An associated student worksheet is also presented.

  10. Vectors in Use in a 3D Juggling Game Simulation

    ERIC Educational Resources Information Center

    Kynigos, Chronis; Latsi, Maria

    2006-01-01

    The new representations enabled by the educational computer game the "Juggler" can place vectors in a central role both for controlling and measuring the behaviours of objects in a virtual environment simulating motion in three-dimensional spaces. The mathematical meanings constructed by 13 year-old students in relation to vectors as objects, as a…

  11. Virtual reality 3D headset based on DMD light modulators

    SciTech Connect

    Bernacki, Bruce E.; Evans, Allan; Tang, Edward

    2014-06-13

    We present the design of an immersion-type 3D headset suitable for virtual reality applications based upon digital micro-mirror devices (DMD). Our approach leverages silicon micro mirrors offering 720p resolution displays in a small form-factor. Supporting chip sets allow rapid integration of these devices into wearable displays with high resolution and low power consumption. Applications include night driving, piloting of UAVs, fusion of multiple sensors for pilots, training, vision diagnostics and consumer gaming. Our design is described in which light from the DMD is imaged to infinity and the user’s own eye lens forms a real image on the user’s retina.

  12. Reconstruction of quadratic curves in 3D using two or more perspective views: simulation studies

    NASA Astrophysics Data System (ADS)

    Kumar, Sanjeev; Sukavanam, N.; Balasubramanian, R.

    2006-01-01

    The shapes of many natural and man-made objects have planar and curvilinear surfaces. The images of such curves usually do not have sufficient distinctive features to apply conventional feature-based reconstruction algorithms. In this paper, we describe a method of reconstruction of a quadratic curve in 3-D space as an intersection of two cones containing the respective projected curve images. The correspondence between this pair of projections of the curve is assumed to be established in this work. Using least-square curve fitting, the parameters of a curve in 2-D space are found. From this we are reconstructing the 3-D quadratic curve. Relevant mathematical formulations and analytical solutions for obtaining the equation of reconstructed curve are given. The result of the described reconstruction methodology are studied by simulation studies. This reconstruction methodology is applicable to LBW decision in cricket, path of the missile, Robotic Vision, path lanning etc.

  13. 3D simulation and analytical model of chemical heating during silicon wet etching in microchannels

    NASA Astrophysics Data System (ADS)

    Konakov, S. A.; Krzhizhanovskaya, V. V.

    2016-02-01

    We investigate chemical heating of a Silicon-on-Glass (SOG) chip during a highly exothermic reaction of silicon etching in potassium hydroxide (KOH) solution in a microchannel of 100-micron width inside a 1x1 cm SOG chip. Two modeling approaches have been developed, implemented and compared. (1) A detailed 3D model is based on unsteady Navier-Stokes equations, heat and mass transfer equations of a laminar flow of viscous incompressible fluid in microchannel, coupled to the heat transfer equation in the solid chip. 3D simulation results predicted temperature distributions for different KOH flow rates and silicon etching areas. Microchannels of a small diameter do not heat the chip due to the insufficient chemical heating of the cold fluid, whereas large-area etching (large channel diameter and/or length) leads to local overheating that may have negative effects on the device performance and durability. (2) A simplified analytical model solves a thermal balance equation describing the heating by chemical reactions inside the microchannel and energy loss by free convection of air around the chip. Analytical results compare well with the 3D simulations of a single straight microchannel, therefore the analytical model is suitable for quick estimation of process parameters. For complex microstructures, this simplified approach may be used as the first approximation.

  14. Fast vision-based catheter 3D reconstruction.

    PubMed

    Moradi Dalvand, Mohsen; Nahavandi, Saeid; Howe, Robert D

    2016-07-21

    Continuum robots offer better maneuverability and inherent compliance and are well-suited for surgical applications as catheters, where gentle interaction with the environment is desired. However, sensing their shape and tip position is a challenge as traditional sensors can not be employed in the way they are in rigid robotic manipulators. In this paper, a high speed vision-based shape sensing algorithm for real-time 3D reconstruction of continuum robots based on the views of two arbitrary positioned cameras is presented. The algorithm is based on the closed-form analytical solution of the reconstruction of quadratic curves in 3D space from two arbitrary perspective projections. High-speed image processing algorithms are developed for the segmentation and feature extraction from the images. The proposed algorithms are experimentally validated for accuracy by measuring the tip position, length and bending and orientation angles for known circular and elliptical catheter shaped tubes. Sensitivity analysis is also carried out to evaluate the robustness of the algorithm. Experimental results demonstrate good accuracy (maximum errors of  ±0.6 mm and  ±0.5 deg), performance (200 Hz), and robustness (maximum absolute error of 1.74 mm, 3.64 deg for the added noises) of the proposed high speed algorithms. PMID:27352011

  15. Rule-based automatic segmentation for 3-D coronary arteriography

    NASA Astrophysics Data System (ADS)

    Sarwal, Alok; Truitt, Paul; Ozguner, Fusun; Zhang, Qian; Parker, Dennis L.

    1992-03-01

    Coronary arteriography is a technique used for evaluating the state of coronary arteries and assessing the need for bypass surgery and angioplasty. The present clinical application of this technology is based on the use of a contrast medium for manual radiographic visualization. This method is inaccurate due to varying interpretation of the visual results. Coronary arteriography based quantitations are impractical in a clinical setting without the use of automatic techniques applied to the 3-D reconstruction of the arterial tree. Such a system will provide an easily reproducible method for following the temporal changes in coronary morphology. The labeling of the arteries and establishing of the correspondence between multiple views is necessary for all subsequent processing required for 3-D reconstruction. This work represents a rule based expert system utilized for automatic labeling and segmentation of the arterial branches across multiple views. X-ray data of two and three views of human subjects and a pig arterial cast have been used for this research.

  16. Fast vision-based catheter 3D reconstruction

    NASA Astrophysics Data System (ADS)

    Moradi Dalvand, Mohsen; Nahavandi, Saeid; Howe, Robert D.

    2016-07-01

    Continuum robots offer better maneuverability and inherent compliance and are well-suited for surgical applications as catheters, where gentle interaction with the environment is desired. However, sensing their shape and tip position is a challenge as traditional sensors can not be employed in the way they are in rigid robotic manipulators. In this paper, a high speed vision-based shape sensing algorithm for real-time 3D reconstruction of continuum robots based on the views of two arbitrary positioned cameras is presented. The algorithm is based on the closed-form analytical solution of the reconstruction of quadratic curves in 3D space from two arbitrary perspective projections. High-speed image processing algorithms are developed for the segmentation and feature extraction from the images. The proposed algorithms are experimentally validated for accuracy by measuring the tip position, length and bending and orientation angles for known circular and elliptical catheter shaped tubes. Sensitivity analysis is also carried out to evaluate the robustness of the algorithm. Experimental results demonstrate good accuracy (maximum errors of  ±0.6 mm and  ±0.5 deg), performance (200 Hz), and robustness (maximum absolute error of 1.74 mm, 3.64 deg for the added noises) of the proposed high speed algorithms.

  17. Photorealistic 3D omni-directional stereo simulator

    NASA Astrophysics Data System (ADS)

    Reiners, Dirk; Cruz-Neira, Carolina; Neumann, Carsten

    2015-03-01

    While a lot of areas in VR have made significant advances, visual rendering in VR is often not quite keeping up with the state of the art. There are many reasons for this, but one way to alleviate some of the issues is by using ray tracing instead of rasterization for image generation. Contrary to popular belief, ray tracing is a realistic, competitive technology nowadays. This paper looks at the pros and cons of using ray tracing and demonstrates the feasibility of employing it using the example of a helicopter flight simulator image generator.

  18. 3D MHD simulation of polarized emission in SN 1006

    NASA Astrophysics Data System (ADS)

    Schneiter, E. M.; Velázquez, P. F.; Reynoso, E. M.; Esquivel, A.; De Colle, F.

    2015-05-01

    We use three-dimensional magnetohydrodynamic simulations to model the supernova remnant SN 1006. From our numerical results, we have carried out a polarization study, obtaining synthetic maps of the polarized intensity, the Stokes parameter Q, and the polar-referenced angle, which can be compared with observational results. Synthetic maps were computed considering two possible particle acceleration mechanisms: quasi-parallel and quasi-perpendicular. The comparison of synthetic maps of the Stokes parameter Q maps with observations proves to be a valuable tool to discern unambiguously which mechanism is taking place in the remnant of SN 1006, giving strong support to the quasi-parallel model.

  19. Simulation of 3D Seismic Wave Propagation with Volcano Topography

    NASA Astrophysics Data System (ADS)

    Ripperger, J.; Igel, H.; Wassermann, J.

    2001-12-01

    We investigate the possibilities of using three-dimensional finite difference (FD) methods for numerical simulation of the seismic wave field at active volcanoes. We put special emphasis on the implementation of the boundary conditions for free surface topography. We compare two different approaches to solve the free surface boundary conditions. The algorithms are implemented on parallel hardware and have been tested for correctness and stability. We apply them to smooth artificial topographies and to the real topography of Mount Merapi, Indonesia. We conclude, that grid stretching type methods (e.g. Hestholm & Ruud, 1994) are not well suited for realistic volcano topography as they tend to become unstable for large topographic gradients. The representation of topography through staircase shaped grids (Ohminato & Chouet, 1997) results in stable calculations, while demanding very fine gridding. The simulations show the effects of a three-dimensional surface topography on elastic wave propagation. Ground motion at the surface is severely affected by topography. If neglected, this may jeopardize attempts to determine source location by analyzing particle motion. Numerical studies like this can help to understand wave propagation phenomena observed on field recordings in volcano seismology. Future studies will aim at separating the wave effects of internal scattering, topography and sources (tremors, tectonic events, pyroclastic flows).

  20. EEG-based usability assessment of 3D shutter glasses

    NASA Astrophysics Data System (ADS)

    Wenzel, Markus A.; Schultze-Kraft, Rafael; Meinecke, Frank C.; Cardinaux, Fabien; Kemp, Thomas; Müller, Klaus-Robert; Curio, Gabriel; Blankertz, Benjamin

    2016-02-01

    Objective. Neurotechnology can contribute to the usability assessment of products by providing objective measures of neural workload and can uncover usability impediments that are not consciously perceived by test persons. In this study, the neural processing effort imposed on the viewer of 3D television by shutter glasses was quantified as a function of shutter frequency. In particular, we sought to determine the critical shutter frequency at which the ‘neural flicker’ vanishes, such that visual fatigue due to this additional neural effort can be prevented by increasing the frequency of the system. Approach. Twenty-three participants viewed an image through 3D shutter glasses, while multichannel electroencephalogram (EEG) was recorded. In total ten shutter frequencies were employed, selected individually for each participant to cover the range below, at and above the threshold of flicker perception. The source of the neural flicker correlate was extracted using independent component analysis and the flicker impact on the visual cortex was quantified by decoding the state of the shutter from the EEG. Main Result. Effects of the shutter glasses were traced in the EEG up to around 67 Hz—about 20 Hz over the flicker perception threshold—and vanished at the subsequent frequency level of 77 Hz. Significance. The impact of the shutter glasses on the visual cortex can be detected by neurotechnology even when a flicker is not reported by the participants. Potential impact. Increasing the shutter frequency from the usual 50 Hz or 60 Hz to 77 Hz reduces the risk of visual fatigue and thus improves shutter-glass-based 3D usability.

  1. Multimedia software design of automobile construction based on 3D engine

    NASA Astrophysics Data System (ADS)

    Xu, Guo-dong; Chi, Xiao-xia

    2013-03-01

    This paper introduces the methods of three-dimensional modeling, assembling and simulating design of an automobile based on 3D engine, Pro/Engineer and 3DSMax. Research is also carried out on the order and the route of virtual assembling as well the corresponding processes.

  2. Dynamic 3D simulations of earthquakes on en echelon faults

    USGS Publications Warehouse

    Harris, R.A.; Day, S.M.

    1999-01-01

    One of the mysteries of earthquake mechanics is why earthquakes stop. This process determines the difference between small and devastating ruptures. One possibility is that fault geometry controls earthquake size. We test this hypothesis using a numerical algorithm that simulates spontaneous rupture propagation in a three-dimensional medium and apply our knowledge to two California fault zones. We find that the size difference between the 1934 and 1966 Parkfield, California, earthquakes may be the product of a stepover at the southern end of the 1934 earthquake and show how the 1992 Landers, California, earthquake followed physically reasonable expectations when it jumped across en echelon faults to become a large event. If there are no linking structures, such as transfer faults, then strike-slip earthquakes are unlikely to propagate through stepovers >5 km wide. Copyright 1999 by the American Geophysical Union.

  3. 3-D Coldtest Simulations of W-Band Devices

    NASA Astrophysics Data System (ADS)

    Petillo, John J.

    1998-04-01

    Recent advances in the simulation and modeling of vacuum electronic devices has opened up the door for the much-anticipated ``first-pass design success" of these devices by computational means. For W-band, this is an exciting prospect since many current designs begin with scaling from lower-frequency devices. The next step is trial and error by fabrication and experimental testing, which demands high precision machining practices as well as reproducible assembly procedures. This can be a very time-consuming, expensive, and error-prone undertaking. Aside from the unit-to-unit variances in dimensions between prototypes, the repeatability of material properties (e.g., dielectric constant and resistivity) in this frequency band is difficult to measure, predict, and ensure. Computers have no such repeatability problems, and run-to-run differences can be predefined, and subsequently analyzed. The computational limitations include setup difficulty, computer time, computer power, and fidelity of the calculation. For W-band devices with 1% or lower bandwidth, fidelity of the numerical solution is critical in the search for ``first-pass design success" capability. The codes have to not only be up to the task, but the appropriate application of these codes becomes an essential ingredient to predicting the accuracy of the results. These issues as well as cross validation between computational models will be discussed. Several recent simulation results of W-band devices will be presented, along with comparisons with data. These will include the NRL/Litton/CPI gyroklystron input coupler and several CPI Coupled Cavity Tube designs.

  4. Triangulation Based 3D Laser Imaging for Fracture Orientation Analysis

    NASA Astrophysics Data System (ADS)

    Mah, J.; Claire, S.; Steve, M.

    2009-05-01

    Laser imaging has recently been identified as a potential tool for rock mass characterization. This contribution focuses on the application of triangulation based, short-range laser imaging to determine fracture orientation and surface texture. This technology measures the distance to the target by triangulating the projected and reflected laser beams, and also records the reflection intensity. In this study, we acquired 3D laser images of rock faces using the Laser Camera System (LCS), a portable instrument developed by Neptec Design Group (Ottawa, Canada). The LCS uses an infrared laser beam and is immune to the lighting conditions. The maximum image resolution is 1024 x 1024 volumetric image elements. Depth resolution is 0.5 mm at 5 m. An above ground field trial was conducted at a blocky road cut with well defined joint sets (Kingston, Ontario). An underground field trial was conducted at the Inco 175 Ore body (Sudbury, Ontario) where images were acquired in the dark and the joint set features were more subtle. At each site, from a distance of 3 m away from the rock face, a grid of six images (approximately 1.6 m by 1.6 m) was acquired at maximum resolution with 20% overlap between adjacent images. This corresponds to a density of 40 image elements per square centimeter. Polyworks, a high density 3D visualization software tool, was used to align and merge the images into a single digital triangular mesh. The conventional method of determining fracture orientations is by manual measurement using a compass. In order to be accepted as a substitute for this method, the LCS should be capable of performing at least to the capabilities of manual measurements. To compare fracture orientation estimates derived from the 3D laser images to manual measurements, 160 inclinometer readings were taken at the above ground site. Three prominent joint sets (strike/dip: 236/09, 321/89, 325/01) were identified by plotting the joint poles on a stereonet. Underground, two main joint

  5. The Virtual Radiopharmacy Laboratory: A 3-D Simulation for Distance Learning

    ERIC Educational Resources Information Center

    Alexiou, Antonios; Bouras, Christos; Giannaka, Eri; Kapoulas, Vaggelis; Nani, Maria; Tsiatsos, Thrasivoulos

    2004-01-01

    This article presents Virtual Radiopharmacy Laboratory (VR LAB), a virtual laboratory accessible through the Internet. VR LAB is designed and implemented in the framework of the VirRAD European project. This laboratory represents a 3D simulation of a radio-pharmacy laboratory, where learners, represented by 3D avatars, can experiment on…

  6. A 3D parallel simulator for crystal growth and solidification in complex alloy systems

    NASA Astrophysics Data System (ADS)

    Nestler, Britta

    2005-02-01

    A 3D parallel simulator is developed to numerically solve the evolution equations of a new non-isothermal phase-field model for crystal growth and solidification in complex alloy systems. The new model and the simulator are capable to simultaneously describe the diffusion processes of multiple components, the phase transitions between multiple phases and the development of the temperature field. Weak and facetted formulations of both, surface energy and kinetic anisotropies are incorporated in the phase-field model. Multicomponent bulk diffusion effects including interdiffusion coefficients as well as diffusion in the interfacial region of phase or grain boundaries are considered. We introduce our parallel simulator that is based on a finite difference discretization including effective adaptive strategies and multigrid methods to reduce computation time and memory usage. The parallelization is realized for distributed as well as shared memory computer architectures using MPI libraries and OpenMP concepts. Applying the new computer model, we present a variety of simulated crystal structures such as dendrites, grains, binary and ternary eutectics in 2D and 3D. The influence of anisotropy on the microstructure evolution shows the formation of facets in preferred crystallographic directions. Phase transformations and solidification processes in a real multi-component alloy can be described by incorporating the physical data (e.g. surface tensions, kinetic coefficients, specific heat, heat and mass diffusion coefficients) and the specific phase diagram (in particular latent heats and melting temperatures) into the diffuse interface model via the free energies.

  7. Ultra-realistic 3-D imaging based on colour holography

    NASA Astrophysics Data System (ADS)

    Bjelkhagen, H. I.

    2013-02-01

    A review of recent progress in colour holography is provided with new applications. Colour holography recording techniques in silver-halide emulsions are discussed. Both analogue, mainly Denisyuk colour holograms, and digitally-printed colour holograms are described and their recent improvements. An alternative to silver-halide materials are the panchromatic photopolymer materials such as the DuPont and Bayer photopolymers which are covered. The light sources used to illuminate the recorded holograms are very important to obtain ultra-realistic 3-D images. In particular the new light sources based on RGB LEDs are described. They show improved image quality over today's commonly used halogen lights. Recent work in colour holography by holographers and companies in different countries around the world are included. To record and display ultra-realistic 3-D images with perfect colour rendering are highly dependent on the correct recording technique using the optimal recording laser wavelengths, the availability of improved panchromatic recording materials and combined with new display light sources.

  8. 3D reconstruction of rotational video microscope based on patches

    NASA Astrophysics Data System (ADS)

    Ma, Shijie; Qu, Yufu

    2015-11-01

    Due to the small field of view and shallow depth of field, the microscope could only capture 2D images of the object. In order to observe the three-dimensional structure of the micro object, a microscopy images reconstruction algorithm based on an improved patch-based multi-view stereo (PMVS) algorithm is proposed. The new algorithm improves PMVS from two aspects: first, increasing the propagation directions, second, on the basis of the expansion, different expansion radius and times are set by the angle between the normal vector of the seed patch and the direction vector of the line passing through the seed patch center and the camera center. Compared with PMVS, the number of 3D points made by the new algorithm is three times as much as PMVS. And the holes in the vertical side are also eliminated.

  9. 3D thermo-chemical-mechanical simulation of power ramps with ALCYONE fuel code

    NASA Astrophysics Data System (ADS)

    Baurens, B.; Sercombe, J.; Riglet-Martial, C.; Desgranges, L.; Trotignon, L.; Maugis, P.

    2014-09-01

    This paper presents the coupling of the fuel performance code ALCYONE with the thermochemical code ANGE and its application to Iodine-Stress Corrosion Cracking (I-SCC). The coupling is illustrated by a 3D simulation of a power ramp. The release of chemically active gases (CsI(g), Tex(1Based on the 3D simulation, the definition of a stress corrosion initiation criterion is discussed. The combination of the hoop stress and of the quantity of reactive iodine (I(g), I2(g) and TeI2(g) only) released by the pellet is used to show that the necessary conditions for Pellet Cladding Interaction-Stress Corrosion Cracking (PCI-SCC) initiation, based on out-of-pile I-SCC laboratory tests criteria, are met during the simulated power transient.

  10. Research on scene organization of process simulation in port 3D GIS

    NASA Astrophysics Data System (ADS)

    Ding, Jing; Jiang, Wenping

    2009-10-01

    At present, the application of three-dimensional GIS becomes more and more widespread gradually, but due to the defect of representing time, four-dimensional GIS based on spatial-temporal expression is facilitated to emerge and progress. Combined with developing the 3D dynamic demonstration of Tianjin center fishing port, this paper researches the mass data and animated simulation of building process and provides an approach that the data is dealt with in the way just as 2D map does such as classification and partition to get clarified data. At the same time, a scene integration method is proposed by dividing a large-scale 3D scene to several sub-scenes with a number of levels and various covering areas. And through editing and synthesizing the commentary, time axis and flight routes, the dynamic simulation and automatic demonstration are achieved. Based on the study above, a system of simulating and illustrating the port building process is designed and implemented.

  11. Robot navigation in cluttered 3-D environments using preference-based fuzzy behaviors.

    PubMed

    Shi, Dongqing; Collins, Emmanuel G; Dunlap, Damion

    2007-12-01

    Autonomous navigation systems for mobile robots have been successfully deployed for a wide range of planar ground-based tasks. However, very few counterparts of previous planar navigation systems were developed for 3-D motion, which is needed for both unmanned aerial and underwater vehicles. A novel fuzzy behavioral scheme for navigating an unmanned helicopter in cluttered 3-D spaces is developed. The 3-D navigation problem is decomposed into several identical 2-D navigation subproblems, each of which is solved by using preference-based fuzzy behaviors. Due to the shortcomings of vector summation during the fusion of the 2-D subproblems, instead of directly outputting steering subdirections by their own defuzzification processes, the intermediate preferences of the subproblems are fused to create a 3-D solution region, representing degrees of preference for the robot movement. A new defuzzification algorithm that steers the robot by finding the centroid of a 3-D convex region of maximum volume in the 3-D solution region is developed. A fuzzy speed-control system is also developed to ensure efficient and safe navigation. Substantial simulations have been carried out to demonstrate that the proposed algorithm can smoothly and effectively guide an unmanned helicopter through unknown and cluttered urban and forest environments. PMID:18179068

  12. 3D fluoroscopic image estimation using patient-specific 4DCBCT-based motion models

    NASA Astrophysics Data System (ADS)

    Dhou, S.; Hurwitz, M.; Mishra, P.; Cai, W.; Rottmann, J.; Li, R.; Williams, C.; Wagar, M.; Berbeco, R.; Ionascu, D.; Lewis, J. H.

    2015-05-01

    3D fluoroscopic images represent volumetric patient anatomy during treatment with high spatial and temporal resolution. 3D fluoroscopic images estimated using motion models built using 4DCT images, taken days or weeks prior to treatment, do not reliably represent patient anatomy during treatment. In this study we developed and performed initial evaluation of techniques to develop patient-specific motion models from 4D cone-beam CT (4DCBCT) images, taken immediately before treatment, and used these models to estimate 3D fluoroscopic images based on 2D kV projections captured during treatment. We evaluate the accuracy of 3D fluoroscopic images by comparison to ground truth digital and physical phantom images. The performance of 4DCBCT-based and 4DCT-based motion models are compared in simulated clinical situations representing tumor baseline shift or initial patient positioning errors. The results of this study demonstrate the ability for 4DCBCT imaging to generate motion models that can account for changes that cannot be accounted for with 4DCT-based motion models. When simulating tumor baseline shift and patient positioning errors of up to 5 mm, the average tumor localization error and the 95th percentile error in six datasets were 1.20 and 2.2 mm, respectively, for 4DCBCT-based motion models. 4DCT-based motion models applied to the same six datasets resulted in average tumor localization error and the 95th percentile error of 4.18 and 5.4 mm, respectively. Analysis of voxel-wise intensity differences was also conducted for all experiments. In summary, this study demonstrates the feasibility of 4DCBCT-based 3D fluoroscopic image generation in digital and physical phantoms and shows the potential advantage of 4DCBCT-based 3D fluoroscopic image estimation when there are changes in anatomy between the time of 4DCT imaging and the time of treatment delivery.

  13. Recent advances in 3D computed tomography techniques for simulation and navigation in hepatobiliary pancreatic surgery.

    PubMed

    Uchida, Masafumi

    2014-04-01

    A few years ago it could take several hours to complete a 3D image using a 3D workstation. Thanks to advances in computer science, obtaining results of interest now requires only a few minutes. Many recent 3D workstations or multimedia computers are equipped with onboard 3D virtual patient modeling software, which enables patient-specific preoperative assessment and virtual planning, navigation, and tool positioning. Although medical 3D imaging can now be conducted using various modalities, including computed tomography (CT), magnetic resonance imaging (MRI), positron emission tomography (PET), and ultrasonography (US) among others, the highest quality images are obtained using CT data, and CT images are now the most commonly used source of data for 3D simulation and navigation image. If the 2D source image is bad, no amount of 3D image manipulation in software will provide a quality 3D image. In this exhibition, the recent advances in CT imaging technique and 3D visualization of the hepatobiliary and pancreatic abnormalities are featured, including scan and image reconstruction technique, contrast-enhanced techniques, new application of advanced CT scan techniques, and new virtual reality simulation and navigation imaging. PMID:24464989

  14. Improving 3D Wavelet-Based Compression of Hyperspectral Images

    NASA Technical Reports Server (NTRS)

    Klimesh, Matthew; Kiely, Aaron; Xie, Hua; Aranki, Nazeeh

    2009-01-01

    Two methods of increasing the effectiveness of three-dimensional (3D) wavelet-based compression of hyperspectral images have been developed. (As used here, images signifies both images and digital data representing images.) The methods are oriented toward reducing or eliminating detrimental effects of a phenomenon, referred to as spectral ringing, that is described below. In 3D wavelet-based compression, an image is represented by a multiresolution wavelet decomposition consisting of several subbands obtained by applying wavelet transforms in the two spatial dimensions corresponding to the two spatial coordinate axes of the image plane, and by applying wavelet transforms in the spectral dimension. Spectral ringing is named after the more familiar spatial ringing (spurious spatial oscillations) that can be seen parallel to and near edges in ordinary images reconstructed from compressed data. These ringing phenomena are attributable to effects of quantization. In hyperspectral data, the individual spectral bands play the role of edges, causing spurious oscillations to occur in the spectral dimension. In the absence of such corrective measures as the present two methods, spectral ringing can manifest itself as systematic biases in some reconstructed spectral bands and can reduce the effectiveness of compression of spatially-low-pass subbands. One of the two methods is denoted mean subtraction. The basic idea of this method is to subtract mean values from spatial planes of spatially low-pass subbands prior to encoding, because (a) such spatial planes often have mean values that are far from zero and (b) zero-mean data are better suited for compression by methods that are effective for subbands of two-dimensional (2D) images. In this method, after the 3D wavelet decomposition is performed, mean values are computed for and subtracted from each spatial plane of each spatially-low-pass subband. The resulting data are converted to sign-magnitude form and compressed in a

  15. 3D printing of tissue-simulating phantoms as a traceable standard for biomedical optical measurement

    NASA Astrophysics Data System (ADS)

    Dong, Erbao; Wang, Minjie; Shen, Shuwei; Han, Yilin; Wu, Qiang; Xu, Ronald

    2016-01-01

    Optical phantoms are commonly used to validate and calibrate biomedical optical devices in order to ensure accurate measurement of optical properties in biological tissue. However, commonly used optical phantoms are based on homogenous materials that reflect neither optical properties nor multi-layer heterogeneities of biological tissue. Using these phantoms for optical calibration may result in significant bias in biological measurement. We propose to characterize and fabricate tissue simulating phantoms that simulate not only the multi-layer heterogeneities but also optical properties of biological tissue. The tissue characterization module detects tissue structural and functional properties in vivo. The phantom printing module generates 3D tissue structures at different scales by layer-by-layer deposition of phantom materials with different optical properties. The ultimate goal is to fabricate multi-layer tissue simulating phantoms as a traceable standard for optimal calibration of biomedical optical spectral devices.

  16. Numerical simulation of 3-D Benard convection with gravitational modulation

    NASA Technical Reports Server (NTRS)

    Biringen, S.; Peltier, L. J.

    1990-01-01

    In this numerical study, randomly and sinusoidally modulated gravitational fields imposed on three-dimensional Rayleigh-Benard convection are investigated in an effort to understand the effects of vibration (G-Jitter) on fluid systems. The time-dependent, Navier-Stokes equations and the energy equation with Boussinesq approximations are solved by a semi-implicit, pseudospectral procedure. An analysis of energy balances indicates that with increasing modulation amplitude, transition from synchronous to relaxation oscillation goes through the subharmonic response. Random modulations are found to be less stabilizing than sinusoidal and are shown to impose three-dimensionality on the flow for some parameter ranges both at terrestrial and zero base gravity conditions.

  17. 3D fluoroscopic image estimation using patient-specific 4DCBCT-based motion models

    PubMed Central

    Dhou, Salam; Hurwitz, Martina; Mishra, Pankaj; Cai, Weixing; Rottmann, Joerg; Li, Ruijiang; Williams, Christopher; Wagar, Matthew; Berbeco, Ross; Ionascu, Dan; Lewis, John H.

    2015-01-01

    3D fluoroscopic images represent volumetric patient anatomy during treatment with high spatial and temporal resolution. 3D fluoroscopic images estimated using motion models built using 4DCT images, taken days or weeks prior to treatment, do not reliably represent patient anatomy during treatment. In this study we develop and perform initial evaluation of techniques to develop patient-specific motion models from 4D cone-beam CT (4DCBCT) images, taken immediately before treatment, and use these models to estimate 3D fluoroscopic images based on 2D kV projections captured during treatment. We evaluate the accuracy of 3D fluoroscopic images by comparing to ground truth digital and physical phantom images. The performance of 4DCBCT- and 4DCT- based motion models are compared in simulated clinical situations representing tumor baseline shift or initial patient positioning errors. The results of this study demonstrate the ability for 4DCBCT imaging to generate motion models that can account for changes that cannot be accounted for with 4DCT-based motion models. When simulating tumor baseline shift and patient positioning errors of up to 5 mm, the average tumor localization error and the 95th percentile error in six datasets were 1.20 and 2.2 mm, respectively, for 4DCBCT-based motion models. 4DCT-based motion models applied to the same six datasets resulted in average tumor localization error and the 95th percentile error of 4.18 and 5.4 mm, respectively. Analysis of voxel-wise intensity differences was also conducted for all experiments. In summary, this study demonstrates the feasibility of 4DCBCT-based 3D fluoroscopic image generation in digital and physical phantoms, and shows the potential advantage of 4DCBCT-based 3D fluoroscopic image estimation when there are changes in anatomy between the time of 4DCT imaging and the time of treatment delivery. PMID:25905722

  18. 3D hydrodynamic simulations of the Galactic supernova remnant CTB 109

    NASA Astrophysics Data System (ADS)

    Bolte, J.; Sasaki, M.; Breitschwerdt, D.

    2015-10-01

    Context. Using detailed 3D hydrodynamic simulations we study the nature of the Galactic supernova remnant (SNR) CTB 109 (G109.1-1.0), which is well known for its semicircular shape and a bright diffuse X-ray emission feature inside the SNR. Aims: Our model has been designed to explain the observed morphology, with a special emphasis on the bright emission feature inside the SNR. Moreover, we determine the age of the remnant and compare our findings with X-ray observations. With CTB 109 we test a new method of detailed numerical simulations of diffuse young objects, using realistic initial conditions derived directly from observations. Methods: We performed numerical 3D simulations with the RAMSES code. The initial density structure has been directly taken from 12CO emission data, adding an additional dense cloud, which, when it is shocked, causes the bright emission feature. Results: From parameter studies we obtained the position (ℓ,b) = (109.1545°,-1.0078°) for an elliptical cloud with ncloud = 25 cm-3 based on the preshock density from Chandra data and a maximum diameter of 4.54 pc, whose encounter with the supernova (SN) shock wave generates the bright X-ray emission inside the SNR. The calculated age of the remnant is about 11 000 yr according to our simulations. In addition, we can also determine the most probable site of the SN explosion. Conclusions: Hydrodynamic simulations can reproduce the morphology and the observed size of the SNR CTB 109 remarkably well. Moreover, the simulations show that it is very plausible that the bright X-ray emission inside the SNR is the result of an elliptical dense cloud shocked by the SN explosion wave. We show that numerical simulations using observational data for an initial model can produce meaningful results.

  19. SVD-GFD scheme to simulate complex moving body problems in 3D space

    NASA Astrophysics Data System (ADS)

    Wang, X. Y.; Yu, P.; Yeo, K. S.; Khoo, B. C.

    2010-03-01

    The present paper presents a hybrid meshfree-and-Cartesian grid method for simulating moving body incompressible viscous flow problems in 3D space. The method combines the merits of cost-efficient and accurate conventional finite difference approximations on Cartesian grids with the geometric freedom of generalized finite difference (GFD) approximations on meshfree grids. Error minimization in GFD is carried out by singular value decomposition (SVD). The Arbitrary Lagrangian-Eulerian (ALE) form of the Navier-Stokes equations on convecting nodes is integrated by a fractional-step projection method. The present hybrid grid method employs a relatively simple mode of nodal administration. Nevertheless, it has the geometrical flexibility of unstructured mesh-based finite-volume and finite element methods. Boundary conditions are precisely implemented on boundary nodes without interpolation. The present scheme is validated by a moving patch consistency test as well as against published results for 3D moving body problems. Finally, the method is applied on low-Reynolds number flapping wing applications, where large boundary motions are involved. The present study demonstrates the potential of the present hybrid meshfree-and-Cartesian grid scheme for solving complex moving body problems in 3D.

  20. 3D numerical simulations of vesicle and inextensible capsule dynamics

    NASA Astrophysics Data System (ADS)

    Farutin, Alexander; Biben, Thierry; Misbah, Chaouqi

    2014-10-01

    Vesicles are locally-inextensible fluid membranes, capsules are endowed with in-plane shear elasticity mimicking the cytoskeleton of red blood cells (RBCs), but are extensible, while RBCs are inextensible. We use boundary integral (BI) methods based on the Green function techniques to model and solve numerically their dynamics. We regularize the single layer integral by subtraction of exact identities for the terms involving the normal and the tangential components of the force. The stability and precision of BI calculation is enhanced by taking advantage of additional quadrature nodes located in vertices of an auxiliary mesh, constructed by a standard refinement procedure from the main mesh. We extend the partition of unity technique to boundary integral calculation on triangular meshes. The proposed algorithm offers the same treatment of near-singular integration regardless whether the source and the target points belong to the same surface or not. Bending forces are calculated by using expressions derived from differential geometry. Membrane incompressibility is handled by using two penalization parameters per suspended entity: one for deviation of the global area from prescribed value and another for the sum of squares of local strains defined on each vertex. Extensible or inextensible capsules, a model of RBC, are studied by storing the position in the reference configuration for each vertex. The elastic force is then calculated by direct variation of the elastic energy. Various nonequilibrium physical examples on vesicles and capsules will be presented and the convergence and precision tests highlighted. Overall, a good convergence is observed with numerical error inversely proportional to the number of vertices used for surface discretization, the highest order of convergence allowed by piece-wise linear interpolation of the surface.

  1. 3D Healpix-based Skymaps Visualization using Java

    NASA Astrophysics Data System (ADS)

    Joliet, E.; O'Mullane, W.; Górski, K. M.; Banday, A. J.; Hivon, E.; Carr, R.

    2008-08-01

    HEALPix {http://healpix.jpl.nasa.gov/} is useful for data analysis and visualization. Gaia is the ESA space astrometry cornerstone mission the main objective of wich is to astrometrically and spectro-photometrically map 10^{9} celestial objects (mostly in our galaxy) with unprecedented accuracy. The data will be organized and stored in a central database at ESAC (Spain). The data treatment needs data analysis and visualization tools to accomplish a successful mission. The 3D Healpix-based skymaps are used as part of the interactive diagnostic tools as well as within the core processing. We present the HEALPix Java library and give some examples of its use within Gaia and Planck processing.

  2. Simulating Seismic Wave Propagation in 3-D Structure: A Case Study For Istanbul City

    NASA Astrophysics Data System (ADS)

    Yelkenci, Seda; Aktar, Mustafa

    2013-04-01

    Investigation of the wave propagation around the Marmara Sea, in particular for the city of Istanbul is critical because this target area is identified as one of the megacities with the highest seismic risk in the world. This study makes an attempt for creating an integrated 3D seismic/geologic model and precise understanding of 3-D wave propagation in the city of Istanbul. The approach is based on generating synthetic seismograms using realistic velocity structures as well as accurate location, focal mechanism and source parameters of reference earthquakes. The modarate size reference earthquakes occured in the Marmara Sea and were recorded by the National Seismic Network of Turkey as well as the network of Istanbul Early Warning and Rapid Response System. The seismograms are simulated by means of a 3-D finite difference method operated on parallel processing environment. In the content of creating a robust velocity model; 1D velocity models which are derived fom previous crustal studies of Marmara region such as refraction seismic and receiver functions have been conducted firstly for depths greater than 1km. Velocity structure in shallower part of the study region is then derived from recent geophysical and geotechnical surveys. To construct 3-D model from the obtained 1-D model data, a variety of interpolation methods are considered. According to the observations on amplitude and arrival time based on comparison of simulated seismograms, the considered velocity model is refined the way that S delay times are compensated. Another important task of this work is an application of the finite difference method to estimate three-dimensional seismic responses for a specified basin structure including soft sediments with low shear velocities in respect of the surrounded area in the Asian part of Istanbul. The analysis performed both in the time and frequency domain, helps in understanding of the comprehensive wave propagation characteristics and the distribution of

  3. 2D and 3D Mass Transfer Simulations in β Lyrae System

    NASA Astrophysics Data System (ADS)

    Nazarenko, V. V.; Glazunova, L. V.; Karetnikov, V. G.

    2001-12-01

    2D and 3D mass transfer simulations of the mass transfer in β Lyrae binary system. We have received that from a point L3 40 per cent of mass transfer from L1-point is lost.The structure of a gas envelope, around system is calculated.3-D mass transfer simulations has shown presence the spiral shock in the disk around primary star's and a jet-like structures (a mass flow in vertical direction) over a stream.

  4. RF study and 3-D simulations of a side-coupling thermionic RF-gun

    NASA Astrophysics Data System (ADS)

    Rimjaem, S.; Kusoljariyakul, K.; Thongbai, C.

    2014-02-01

    A thermionic RF-gun for generating ultra-short electron bunches was optimized, developed and used as a source at a linac-based THz radiation research laboratory of the Plasma and Beam Physics Research Facility, Chiang Mai University, Thailand. The RF-gun is a π/2-mode standing wave structure, which consists of two S-band accelerating cells and a side-coupling cavity. The 2856 MHz RF wave is supplied from an S-band klystron to the gun through the waveguide input-port at the cylindrical wall of the second cell. A fraction of the RF power is coupled from the second cell to the first one via a side-coupling cavity. Both the waveguide input-port and the side-coupling cavity lead to an asymmetric geometry of the gun. RF properties and electromagnetic field distributions inside the RF-gun were studied and numerically simulated by using computer codes SUPERFISH 7.19 and CST Microwave Studio 2012©. RF characterizations and tunings of the RF-gun were performed to ensure the reliability of the gun operation. The results from 3D simulations and measurements are compared and discussed in this paper. The influence of asymmetric field distributions inside the RF-gun on the electron beam properties was investigated via 3D beam dynamics simulations. A change in the coupling-plane of the side-coupling cavity is suggested to improve the gun performance.

  5. 3-D-numerical approach to simulate an avalanche impact into a reservoir

    NASA Astrophysics Data System (ADS)

    Gabl, R.; Seibl, J.; Gems, B.; Aufleger, M.

    2015-06-01

    The impact of an avalanche into a reservoir induces an impulse wave, which poses a threat to population and infrastructure. For a good approximation of the generated wave height and length as well as the resulting outflow volume over structures and dams, formulas, which base on different simplifying assumptions, can be used. Further project-specific investigations by means of a scale model test or numerical simulations are advisable for complex reservoirs as well as the inclusion of hydraulic structures such as spillways. The paper presents a new approach for a 3-D-numerical simulation of an avalanche impact into a reservoir. In this model concept the energy and mass of the avalanche are represented by accelerated water on the real hill slope. Instead of snow, only water and air are used to simulate the moving avalanche with the software FLOW-3D. A significant advantage of this assumption is the self-adaptation of the model avalanche onto the terrain. In order to reach good comparability of the results with existing research at the ETH Zürich, a simplified reservoir geometry is investigated. Thus, a reference case has been analysed including a variation of three geometry parameters (still water depth in the reservoir, freeboard of the dam and reservoir width).

  6. Toward realistic radiofrequency ablation of hepatic tumors 3D simulation and planning

    NASA Astrophysics Data System (ADS)

    Villard, Caroline; Soler, Luc; Gangi, Afshin; Mutter, Didier; Marescaux, Jacques

    2004-05-01

    Radiofrequency ablation (RFA) has become an increasingly used technique in the treatment of patients with unresectable hepatic tumors. Evaluation of vascular architecture, post-RFA tissue necrosis prediction, and the choice of a suitable needle placement strategy using conventional radiological techniques remain difficult. In an attempt to enhance the safety of RFA, a 3D simulator and treatment planning tool, that simulates the necrosis of the treated area, and proposes an optimal placement for the needle, has been developed. From enhanced spiral CT scans with 2 mm cuts, 3D reconstructions of patients with liver metastases are automatically generated. Virtual needles can be added to the 3D scene, together with their corresponding zones of necrosis that are displayed as a meshed spheroids representing the 60° C isosurface. The simulator takes into account the cooling effect of local vessels greater than 3mm in diameter, making necrosis shapes more realistic. Using a voxel-based algorithm, RFA spheroids are deformed following the shape of the vessels, extended by an additional cooled area. This operation is performed in real-time, allowing updates while needle is adjusted. This allows to observe whether the considered needle placement strategy would burn the whole cancerous zone or not. Planned needle positioning can also be automatically generated by the software to produce complete destruction of the tumor with a 1 cm margin, with maximum respect of the healthy liver and of all major extrahepatic and intrahepatic structures to avoid. If he wishes, the radiologist can select on the skin an insertion window for the needle, focusing the research of the trajectory.

  7. Error analysis of a 3D imaging system based on fringe projection technique

    NASA Astrophysics Data System (ADS)

    Zhang, Zonghua; Dai, Jie

    2013-12-01

    In the past few years, optical metrology has found numerous applications in scientific and commercial fields owing to its non-contact nature. One of the most popular methods is the measurement of 3D surface based on fringe projection techniques because of the advantages of non-contact operation, full-field and fast acquisition and automatic data processing. In surface profilometry by using digital light processing (DLP) projector, many factors affect the accuracy of 3D measurement. However, there is no research to give the complete error analysis of a 3D imaging system. This paper will analyze some possible error sources of a 3D imaging system, for example, nonlinear response of CCD camera and DLP projector, sampling error of sinusoidal fringe pattern, variation of ambient light and marker extraction during calibration. These error sources are simulated in a software environment to demonstrate their effects on measurement. The possible compensation methods are proposed to give high accurate shape data. Some experiments were conducted to evaluate the effects of these error sources on 3D shape measurement. Experimental results and performance evaluation show that these errors have great effect on measuring 3D shape and it is necessary to compensate for them for accurate measurement.

  8. Evaluation of regression-based 3-D shoulder rhythms.

    PubMed

    Xu, Xu; Dickerson, Clark R; Lin, Jia-Hua; McGorry, Raymond W

    2016-08-01

    The movements of the humerus, the clavicle, and the scapula are not completely independent. The coupled pattern of movement of these bones is called the shoulder rhythm. To date, multiple studies have focused on providing regression-based 3-D shoulder rhythms, in which the orientations of the clavicle and the scapula are estimated by the orientation of the humerus. In this study, six existing regression-based shoulder rhythms were evaluated by an independent dataset in terms of their predictability. The datasets include the measured orientations of the humerus, the clavicle, and the scapula of 14 participants over 118 different upper arm postures. The predicted orientations of the clavicle and the scapula were derived from applying those regression-based shoulder rhythms to the humerus orientation. The results indicated that none of those regression-based shoulder rhythms provides consistently more accurate results than the others. For all the joint angles and all the shoulder rhythms, the RMSE are all greater than 5°. Among those shoulder rhythms, the scapula lateral/medial rotation has the strongest correlation between the predicted and the measured angles, while the other thoracoclavicular and thoracoscapular bone orientation angles only showed a weak to moderate correlation. Since the regression-based shoulder rhythm has been adopted for shoulder biomechanical models to estimate shoulder muscle activities and structure loads, there needs to be further investigation on how the predicted error from the shoulder rhythm affects the output of the biomechanical model. PMID:26253991

  9. Enabling Lorentz boosted frame particle-in-cell simulations of laser wakefield acceleration in quasi-3D geometry

    NASA Astrophysics Data System (ADS)

    Yu, Peicheng; Xu, Xinlu; Davidson, Asher; Tableman, Adam; Dalichaouch, Thamine; Li, Fei; Meyers, Michael D.; An, Weiming; Tsung, Frank S.; Decyk, Viktor K.; Fiuza, Frederico; Vieira, Jorge; Fonseca, Ricardo A.; Lu, Wei; Silva, Luis O.; Mori, Warren B.

    2016-07-01

    When modeling laser wakefield acceleration (LWFA) using the particle-in-cell (PIC) algorithm in a Lorentz boosted frame, the plasma is drifting relativistically at βb c towards the laser, which can lead to a computational speedup of ∼ γb2 = (1 - βb2)-1. Meanwhile, when LWFA is modeled in the quasi-3D geometry in which the electromagnetic fields and current are decomposed into a limited number of azimuthal harmonics, speedups are achieved by modeling three dimensional (3D) problems with the computational loads on the order of two dimensional r - z simulations. Here, we describe a method to combine the speedups from the Lorentz boosted frame and quasi-3D algorithms. The key to the combination is the use of a hybrid Yee-FFT solver in the quasi-3D geometry that significantly mitigates the Numerical Cerenkov Instability (NCI) which inevitably arises in a Lorentz boosted frame due to the unphysical coupling of Langmuir modes and EM modes of the relativistically drifting plasma in these simulations. In addition, based on the space-time distribution of the LWFA data in the lab and boosted frame, we propose to use a moving window to follow the drifting plasma, instead of following the laser driver as is done in the LWFA lab frame simulations, in order to further reduce the computational loads. We describe the details of how the NCI is mitigated for the quasi-3D geometry, the setups for simulations which combine the Lorentz boosted frame, quasi-3D geometry, and the use of a moving window, and compare the results from these simulations against their corresponding lab frame cases. Good agreement is obtained among these sample simulations, particularly when there is no self-trapping, which demonstrates it is possible to combine the Lorentz boosted frame and the quasi-3D algorithms when modeling LWFA. We also discuss the preliminary speedups achieved in these sample simulations.

  10. Interactive Cosmetic Makeup of a 3D Point-Based Face Model

    NASA Astrophysics Data System (ADS)

    Kim, Jeong-Sik; Choi, Soo-Mi

    We present an interactive system for cosmetic makeup of a point-based face model acquired by 3D scanners. We first enhance the texture of a face model in 3D space using low-pass Gaussian filtering, median filtering, and histogram equalization. The user is provided with a stereoscopic display and haptic feedback, and can perform simulated makeup tasks including the application of foundation, color makeup, and lip gloss. Fast rendering is achieved by processing surfels using the GPU, and we use a BSP tree data structure and a dynamic local refinement of the facial surface to provide interactive haptics. We have implemented a prototype system and evaluated its performance.

  11. Software-based geometry operations for 3D computer graphics

    NASA Astrophysics Data System (ADS)

    Sima, Mihai; Iancu, Daniel; Glossner, John; Schulte, Michael; Mamidi, Suman

    2006-02-01

    In order to support a broad dynamic range and a high degree of precision, many of 3D renderings fundamental algorithms have been traditionally performed in floating-point. However, fixed-point data representation is preferable over floating-point representation in graphics applications on embedded devices where performance is of paramount importance, while the dynamic range and precision requirements are limited due to the small display sizes (current PDA's are 640 × 480 (VGA), while cell-phones are even smaller). In this paper we analyze the efficiency of a CORDIC-augmented Sandbridge processor when implementing a vertex processor in software using fixed-point arithmetic. A CORDIC-based solution for vertex processing exhibits a number of advantages over classical Multiply-and-Acumulate solutions. First, since a single primitive is used to describe the computation, the code can easily be vectorized and multithreaded, and thus fits the major Sandbridge architectural features. Second, since a CORDIC iteration consists of only a shift operation followed by an addition, the computation may be deeply pipelined. Initially, we outline the Sandbridge architecture extension which encompasses a CORDIC functional unit and the associated instructions. Then, we consider rigid-body rotation, lighting, exponentiation, vector normalization, and perspective division (which are some of the most important data-intensive 3D graphics kernels) and propose a scheme to implement them on the CORDIC-augmented Sandbridge processor. Preliminary results indicate that the performance improvement within the extended instruction set ranges from 3× to 10× (with the exception of rigid body rotation).

  12. Research of Fast 3D Imaging Based on Multiple Mode

    NASA Astrophysics Data System (ADS)

    Chen, Shibing; Yan, Huimin; Ni, Xuxiang; Zhang, Xiuda; Wang, Yu

    2016-02-01

    Three-dimensional (3D) imaging has received increasingly extensive attention and has been widely used currently. Lots of efforts have been put on three-dimensional imaging method and system study, in order to meet fast and high accurate requirement. In this article, we realize a fast and high quality stereo matching algorithm on field programmable gate array (FPGA) using the combination of time-of-flight (TOF) camera and binocular camera. Images captured from the two cameras own a same spatial resolution, letting us use the depth maps taken by the TOF camera to figure initial disparity. Under the constraint of the depth map as the stereo pairs when comes to stereo matching, expected disparity of each pixel is limited within a narrow search range. In the meanwhile, using field programmable gate array (FPGA, altera cyclone IV series) concurrent computing we can configure multi core image matching system, thus doing stereo matching on embedded system. The simulation results demonstrate that it can speed up the process of stereo matching and increase matching reliability and stability, realize embedded calculation, expand application range.

  13. Hydrogel-based reinforcement of 3D bioprinted constructs.

    PubMed

    Melchels, Ferry P W; Blokzijl, Maarten M; Levato, Riccardo; Peiffer, Quentin C; Ruijter, Mylène de; Hennink, Wim E; Vermonden, Tina; Malda, Jos

    2016-01-01

    Progress within the field of biofabrication is hindered by a lack of suitable hydrogel formulations. Here, we present a novel approach based on a hybrid printing technique to create cellularized 3D printed constructs. The hybrid bioprinting strategy combines a reinforcing gel for mechanical support with a bioink to provide a cytocompatible environment. In comparison with thermoplastics such as [Formula: see text]-polycaprolactone, the hydrogel-based reinforcing gel platform enables printing at cell-friendly temperatures, targets the bioprinting of softer tissues and allows for improved control over degradation kinetics. We prepared amphiphilic macromonomers based on poloxamer that form hydrolysable, covalently cross-linked polymer networks. Dissolved at a concentration of 28.6%w/w in water, it functions as reinforcing gel, while a 5%w/w gelatin-methacryloyl based gel is utilized as bioink. This strategy allows for the creation of complex structures, where the bioink provides a cytocompatible environment for encapsulated cells. Cell viability of equine chondrocytes encapsulated within printed constructs remained largely unaffected by the printing process. The versatility of the system is further demonstrated by the ability to tune the stiffness of printed constructs between 138 and 263 kPa, as well as to tailor the degradation kinetics of the reinforcing gel from several weeks up to more than a year. PMID:27431861

  14. Generation and use of measurement-based 3-D dose distributions for 3-D dose calculation verification.

    PubMed

    Stern, R L; Fraass, B A; Gerhardsson, A; McShan, D L; Lam, K L

    1992-01-01

    A 3-D radiation therapy treatment planning system calculates dose to an entire volume of points and therefore requires a 3-D distribution of measured dose values for quality assurance and dose calculation verification. To measure such a volumetric distribution with a scanning ion chamber is prohibitively time consuming. A method is presented for the generation of a 3-D grid of dose values based on beam's-eye-view (BEV) film dosimetry. For each field configuration of interest, a set of BEV films at different depths is obtained and digitized, and the optical densities are converted to dose. To reduce inaccuracies associated with film measurement of megavoltage photon depth doses, doses on the different planes are normalized using an ion-chamber measurement of the depth dose. A 3-D grid of dose values is created by interpolation between BEV planes along divergent beam rays. This matrix of measurement-based dose values can then be compared to calculations over the entire volume of interest. This method is demonstrated for three different field configurations. Accuracy of the film-measured dose values is determined by 1-D and 2-D comparisons with ion chamber measurements. Film and ion chamber measurements agree within 2% in the central field regions and within 2.0 mm in the penumbral regions. PMID:1620042

  15. Terascale direct numerical simulations of turbulent combustion using S3D.

    SciTech Connect

    Sankaran, Ramanan; Mellor-Crummy, J.; DeVries, M.; Yoo, Chun Sang; Ma, K. L.; Podhorski, N.; Liao, W. K.; Klasky, S.; de Supinski, B.; Choudhary, A.; Hawkes, Evatt R.; Chen, Jacqueline H.; Shende, Sameer

    2008-08-01

    Computational science is paramount to the understanding of underlying processes in internal combustion engines of the future that will utilize non-petroleum-based alternative fuels, including carbon-neutral biofuels, and burn in new combustion regimes that will attain high efficiency while minimizing emissions of particulates and nitrogen oxides. Next-generation engines will likely operate at higher pressures, with greater amounts of dilution and utilize alternative fuels that exhibit a wide range of chemical and physical properties. Therefore, there is a significant role for high-fidelity simulations, direct numerical simulations (DNS), specifically designed to capture key turbulence-chemistry interactions in these relatively uncharted combustion regimes, and in particular, that can discriminate the effects of differences in fuel properties. In DNS, all of the relevant turbulence and flame scales are resolved numerically using high-order accurate numerical algorithms. As a consequence terascale DNS are computationally intensive, require massive amounts of computing power and generate tens of terabytes of data. Recent results from terascale DNS of turbulent flames are presented here, illustrating its role in elucidating flame stabilization mechanisms in a lifted turbulent hydrogen/air jet flame in a hot air co-flow, and the flame structure of a fuel-lean turbulent premixed jet flame. Computing at this scale requires close collaborations between computer and combustion scientists to provide optimized scaleable algorithms and software for terascale simulations, efficient collective parallel I/O, tools for volume visualization of multiscale, multivariate data and automating the combustion workflow. The enabling computer science, applied to combustion science, is also required in many other terascale physics and engineering simulations. In particular, performance monitoring is used to identify the performance of key kernels in the DNS code, S3D and especially memory

  16. Terascale direct numerical simulations of turbulent combustion using S3D

    NASA Astrophysics Data System (ADS)

    Chen, J. H.; Choudhary, A.; de Supinski, B.; DeVries, M.; Hawkes, E. R.; Klasky, S.; Liao, W. K.; Ma, K. L.; Mellor-Crummey, J.; Podhorszki, N.; Sankaran, R.; Shende, S.; Yoo, C. S.

    2009-01-01

    Computational science is paramount to the understanding of underlying processes in internal combustion engines of the future that will utilize non-petroleum-based alternative fuels, including carbon-neutral biofuels, and burn in new combustion regimes that will attain high efficiency while minimizing emissions of particulates and nitrogen oxides. Next-generation engines will likely operate at higher pressures, with greater amounts of dilution and utilize alternative fuels that exhibit a wide range of chemical and physical properties. Therefore, there is a significant role for high-fidelity simulations, direct numerical simulations (DNS), specifically designed to capture key turbulence-chemistry interactions in these relatively uncharted combustion regimes, and in particular, that can discriminate the effects of differences in fuel properties. In DNS, all of the relevant turbulence and flame scales are resolved numerically using high-order accurate numerical algorithms. As a consequence terascale DNS are computationally intensive, require massive amounts of computing power and generate tens of terabytes of data. Recent results from terascale DNS of turbulent flames are presented here, illustrating its role in elucidating flame stabilization mechanisms in a lifted turbulent hydrogen/air jet flame in a hot air coflow, and the flame structure of a fuel-lean turbulent premixed jet flame. Computing at this scale requires close collaborations between computer and combustion scientists to provide optimized scaleable algorithms and software for terascale simulations, efficient collective parallel I/O, tools for volume visualization of multiscale, multivariate data and automating the combustion workflow. The enabling computer science, applied to combustion science, is also required in many other terascale physics and engineering simulations. In particular, performance monitoring is used to identify the performance of key kernels in the DNS code, S3D and especially memory

  17. Energy harvesting “3-D knitted spacer” based piezoelectric textiles

    NASA Astrophysics Data System (ADS)

    Anand, S.; Soin, N.; Shah, T. H.; Siores, E.

    2016-07-01

    The piezoelectric effect in Poly(vinylidene fluoride), PVDF, was discovered over four decades ago and since then, significant work has been carried out aiming at the production of high p-phase fibres and their integration into fabric structures for energy harvesting. However, little work has been done in the area of production of “true piezoelectric fabric structures” based on flexible polymeric materials such as PVDF. In this work, we demonstrate “3-D knitted spacer” technology based all-fibre piezoelectric fabrics as power generators and energy harvesters. The knitted single-structure piezoelectric generator consists of high p-phase (~80%) piezoelectric PVDF monofilaments as the spacer yarn interconnected between silver (Ag) coated polyamide multifilament yarn layers acting as the top and bottom electrodes. The novel and unique textile structure provides an output power density in the range of 1.105.10 gWcm-2 at applied impact pressures in the range of 0.02-0.10 MPa, thus providing significantly higher power outputs and efficiencies over the existing 2-D woven and nonwoven piezoelectric structures. The high energy efficiency, mechanical durability and comfort of the soft, flexible and all-fibre based power generator is highly attractive for a variety of potential applications such as wearable electronic systems and energy harvesters charged from ambient environment or by human movement.

  18. VAWT (Vertical-Axis Wind Turbines) stochastic loads using a 3-D turbulence simulation

    SciTech Connect

    Homicz, G.F.

    1988-01-01

    The stochastic (i.e., random) aerodynamic loads created by atmospheric turbulence are thought to be a primary cause of premature blade fatigue in Vertical-Axis Wind Turbines (VAWTs). This paper describes a computer program for the prediction of these stochastic loads, based on a full 3-D simulation of the turbulence field. Computed results using this model are compared with the deterministic (periodic) loads which occur in the absence of turbulence, and with the predictions of an earlier model which employed a 1-D simulation of the turbulence. The results show that not only are instantaneous loads significantly influenced by turbulence, but that load distributions averaged over numerous revolutions are affected as well. A particularly interesting finding is that, for the same mean wind speed, the average output power is altered by turbulence. 16 refs., 6 figs., 1 tab.

  19. VAWT (Vertical-Axis Wind Turbines) stochastic loads using a 3-D turbulence simulation

    NASA Astrophysics Data System (ADS)

    Homicz, Gregory F.

    The stochastic (i.e., random) aerodynamic loads created by atmospheric turbulence are thought to be a primary cause of premature blade fatigue in Vertical-Axis Wind Turbines (VAWTs). This paper describes a computer program for the prediction of these stochastic loads, based on a full 3-D simulation of the turbulence field. Computed results using this model are compared with the deterministic (periodic) loads which occur in the absence of turbulence, and with the predictions of an earlier model which employed a 1-D simulation of the turbulence. The results show that not only are instantaneous loads significantly influenced by turbulence, but that load distributions averaged over numerous revolutions are affected as well. A particularly interesting finding is that, for the same mean wind speed, the average output power is altered by turbulence.

  20. GATOR: A 3-D time-dependent simulation code for helix TWTs

    SciTech Connect

    Zaidman, E.G.; Freund, H.P.

    1996-12-31

    A 3D nonlinear analysis of helix TWTs is presented. The analysis and simulation code is based upon a spectral decomposition using the vacuum sheath helix modes. The field equations are integrated on a grid and advanced in time using a MacCormack predictor-corrector scheme, and the electron orbit equations are integrated using a fourth order Runge-Kutta algorithm. Charge is accumulated on the grid and the field is interpolated to the particle location by a linear map. The effect of dielectric liners on the vacuum sheath helix dispersion is included in the analysis. Several numerical cases are considered. Simulation of the injection of a DC beam and a signal at a single frequency is compared with a linear field theory of the helix TWT interaction, and good agreement is found.

  1. Nanoelectronic Modeling (NEMO): Moving from commercial grade 1-D simulation to prototype 3-D simulation

    NASA Astrophysics Data System (ADS)

    Klimeck, Gerhard

    2001-03-01

    The quantum mechanical functionality of commercially pursued heterostructure devices such as resonant tunneling diodes (RTDs), quantum well infrared photodetectors, and quantum well lasers are enabled by material variations on an atomic scale. The creation of these heterostructure devices is realized in a vast design space of material compositions, layer thicknesses and doping profiles. The full experimental exploration of this design space is unfeasible and a reliable design tool is needed. The Nanoelectronic Modeling tool (NEMO) is one of the first commercial grade attempts for such a modeling tool. NEMO was developed as a general-purpose quantum mechanics-based 1-D device design and analysis tool from 1993-97 by the Central Research Laboratory of Texas Instruments (later Raytheon Systems). NEMO enables(R. Lake, G. Klimeck, R. C. Bowen, and D. Jovanovic, J. Appl. Phys. 81), 7845 (1997). the fundamentally sound inclusion of the required(G. Klimeck et al.), in the 1997 55th Annual Device Research Conference Digest, (IEEE, NJ, 1997), p. 92^,(R. C. Bowen et al.), J. Appl. Phys 81, 3207 (1997). physics: bandstructure, scattering, and charge self-consistency based on the non-equilibrium Green function approach. A new class of devices which require full 3-D quantum mechanics based models is starting to emerge: quantum dots, or in general semiconductor based deca-nano devices. We are currently building a 3-D modeling tool based on NEMO to include the important physics to understand electronic stated in such superscaled structures. This presentation will overview various facets of the NEMO 1-D tool such electron transport physics in RTDs, numerical technology, software engineering and graphical user interface. The lessons learned from that work are now entering the 3D>NEMO 3-D development and first results using the NEMO 3-D prototype will be shown. More information about

  2. Effect of Model Scale and Particle Size Distribution on PFC3D Simulation Results

    NASA Astrophysics Data System (ADS)

    Ding, Xiaobin; Zhang, Lianyang; Zhu, Hehua; Zhang, Qi

    2014-11-01

    This paper investigates the effect of model scale and particle size distribution on the simulated macroscopic mechanical properties, unconfined compressive strength (UCS), Young's modulus and Poisson's ratio, using the three-dimensional particle flow code (PFC3D). Four different maximum to minimum particle size ( d max/ d min) ratios, all having a continuous uniform size distribution, were considered and seven model (specimen) diameter to median particle size ratios ( L/ d) were studied for each d max/ d min ratio. The results indicate that the coefficients of variation (COVs) of the simulated macroscopic mechanical properties using PFC3D decrease significantly as L/ d increases. The results also indicate that the simulated mechanical properties using PFC3D show much lower COVs than those in PFC2D at all model scales. The average simulated UCS and Young's modulus using the default PFC3D procedure keep increasing with larger L/ d, although the rate of increase decreases with larger L/ d. This is mainly caused by the decrease of model porosity with larger L/ d associated with the default PFC3D method and the better balanced contact force chains at larger L/ d. After the effect of model porosity is eliminated, the results on the net model scale effect indicate that the average simulated UCS still increases with larger L/ d but the rate is much smaller, the average simulated Young's modulus decreases with larger L/ d instead, and the average simulated Poisson's ratio versus L/ d relationship remains about the same. Particle size distribution also affects the simulated macroscopic mechanical properties, larger d max/ d min leading to greater average simulated UCS and Young's modulus and smaller average simulated Poisson's ratio, and the changing rates become smaller at larger d max/ d min. This study shows that it is important to properly consider the effect of model scale and particle size distribution in PFC3D simulations.

  3. NVision: A 3D Visualization Environment for N-Body Simulations

    NASA Astrophysics Data System (ADS)

    Markiel, J. A.

    2000-05-01

    NVision: A 3D Visualization Environment for N-Body Simulations We are developing a set of packages for 3D visualization and analysis of our numerical N-body simulations. These tools are intended to be generalizable to a wide range of related problems including cosmological, planetary dynamics, and molecular dynamics simulations. The applications and source code will be fully available to the community. To prototype this project we have adopted the Java platform with the newly released Java3D extension to take advantage of its portability, object-oriented environment, and availability of extensive documentation and class libraries. We will describe the goals and design principles of the project and demo the currently implemented features, including visualization of cosmological simulations and the simulated collision of two rubble-pile asteroids. This research is supported by NSF grants AST99-73209 and AST99-79891.

  4. 3D model-based still image object categorization

    NASA Astrophysics Data System (ADS)

    Petre, Raluca-Diana; Zaharia, Titus

    2011-09-01

    This paper proposes a novel recognition scheme algorithm for semantic labeling of 2D object present in still images. The principle consists of matching unknown 2D objects with categorized 3D models in order to infer the semantics of the 3D object to the image. We tested our new recognition framework by using the MPEG-7 and Princeton 3D model databases in order to label unknown images randomly selected from the web. Results obtained show promising performances, with recognition rate up to 84%, which opens interesting perspectives in terms of semantic metadata extraction from still images/videos.

  5. 3D simulations of pre-ionized and two-stage ionization injected laser wakefield accelerators

    NASA Astrophysics Data System (ADS)

    Davidson, Asher; Zheng, Ming; Lu, Wei; Xu, Xinlu; Joshi, Chang; Silva, Luis O.; Martins, Joana; Fonseca, Ricardo; Mori, Warren B.

    2012-12-01

    In plasma based accelerators (LWFA and PWFA), the methods of injecting high quality electron bunches into the accelerating wakefield is of utmost importance for various applications. To fully understand the numerical effect of simulating the trapping process, numerous numerical convergence tests were performed to ensure the correctness of preionized simulations which confirm the physical picture first proposed in [1]. We Further investigate the use of a two-stage ionization injected LWFA to achieve high quality monoenergetic beams through the use of 3D PIC simulations. The first stage constitutes the Injection Regime, which is 99.5% He and 0.5% N, while the second stage constitutes the Acceleration Regime, which is entirely composed of He. Two of the simulations model the parameters of the LWFA experiments for the LLNL Callisto laser, at laser powers of 90 and 100TW. energies as high as 680MeV were observed in the 90TW simulation, and those as high as 1.44GeV were observed in the 100TW simulation. The affect of the matching condition of the spot size in this LWFA is discussed.

  6. 3D face recognition using simulated annealing and the surface interpenetration measure.

    PubMed

    Queirolo, Chauã C; Silva, Luciano; Bellon, Olga R P; Segundo, Maurício Pamplona

    2010-02-01

    This paper presents a novel automatic framework to perform 3D face recognition. The proposed method uses a Simulated Annealing-based approach (SA) for range image registration with the Surface Interpenetration Measure (SIM), as similarity measure, in order to match two face images. The authentication score is obtained by combining the SIM values corresponding to the matching of four different face regions: circular and elliptical areas around the nose, forehead, and the entire face region. Then, a modified SA approach is proposed taking advantage of invariant face regions to better handle facial expressions. Comprehensive experiments were performed on the FRGC v2 database, the largest available database of 3D face images composed of 4,007 images with different facial expressions. The experiments simulated both verification and identification systems and the results compared to those reported by state-of-the-art works. By using all of the images in the database, a verification rate of 96.5 percent was achieved at a False Acceptance Rate (FAR) of 0.1 percent. In the identification scenario, a rank-one accuracy of 98.4 percent was achieved. To the best of our knowledge, this is the highest rank-one score ever achieved for the FRGC v2 database when compared to results published in the literature. PMID:20075453

  7. Image-Based 3d Reconstruction and Analysis for Orthodontia

    NASA Astrophysics Data System (ADS)

    Knyaz, V. A.

    2012-08-01

    Among the main tasks of orthodontia are analysis of teeth arches and treatment planning for providing correct position for every tooth. The treatment plan is based on measurement of teeth parameters and designing perfect teeth arch curve which teeth are to create after treatment. The most common technique for teeth moving uses standard brackets which put on teeth and a wire of given shape which is clamped by these brackets for producing necessary forces to every tooth for moving it in given direction. The disadvantages of standard bracket technique are low accuracy of tooth dimensions measurements and problems with applying standard approach for wide variety of complex orthodontic cases. The image-based technique for orthodontic planning, treatment and documenting aimed at overcoming these disadvantages is proposed. The proposed approach provides performing accurate measurements of teeth parameters needed for adequate planning, designing correct teeth position and monitoring treatment process. The developed technique applies photogrammetric means for teeth arch 3D model generation, brackets position determination and teeth shifting analysis.

  8. Virtual reality 3D headset based on DMD light modulators

    NASA Astrophysics Data System (ADS)

    Bernacki, Bruce E.; Evans, Allan; Tang, Edward

    2014-06-01

    We present the design of an immersion-type 3D headset suitable for virtual reality applications based upon digital micromirror devices (DMD). Current methods for presenting information for virtual reality are focused on either polarizationbased modulators such as liquid crystal on silicon (LCoS) devices, or miniature LCD or LED displays often using lenses to place the image at infinity. LCoS modulators are an area of active research and development, and reduce the amount of viewing light by 50% due to the use of polarization. Viewable LCD or LED screens may suffer low resolution, cause eye fatigue, and exhibit a "screen door" or pixelation effect due to the low pixel fill factor. Our approach leverages a mature technology based on silicon micro mirrors delivering 720p resolution displays in a small form-factor with high fill factor. Supporting chip sets allow rapid integration of these devices into wearable displays with high-definition resolution and low power consumption, and many of the design methods developed for DMD projector applications can be adapted to display use. Potential applications include night driving with natural depth perception, piloting of UAVs, fusion of multiple sensors for pilots, training, vision diagnostics and consumer gaming. Our design concept is described in which light from the DMD is imaged to infinity and the user's own eye lens forms a real image on the user's retina resulting in a virtual retinal display.

  9. A first approach of 3D Geostrophic Currents based on GOCE, altimetry and ARGO data

    NASA Astrophysics Data System (ADS)

    Sempere Beneyto, M. Dolores; Vigo, Isabel; Chao, Ben F.

    2016-04-01

    The most recent advances in the geoid determination, provided by the Gravity Field and Steady-State Ocean Circulation Explorer (GOCE) mission, together with the continuous monitoring of the sea surface height by the altimeters on board of satellites and Argo data makes possible to estimate the ocean geostrophy in 3D. In this work, we present a first approach of the 3D geostrophic circulation for North Atlantic region, from the surface down to 1500 m depth. It has been computed for a 10 years period (2004-2014), using an observation-based approach that combines altimetry with temperature and salinity through the thermal wind equation gridded at one degree longitude and latitude resolution. For validation of the results, the estimated 3D geostrophic circulation is compared with Ocean Circulation Models simulations and/or in-situ data, showing in all cases similar patterns.

  10. The dark side of photovoltaic — 3D simulation of glare assessing risk and discomfort

    SciTech Connect

    Rose, Thomas; Wollert, Alexander

    2015-04-15

    Photovoltaic (PV) systems form an important force in the implementation of renewable energies, but as we all know, the force has always its dark side. Besides efficiency considerations and discussions about architectures of power distribution networks, the increasing numbers of installations of PV systems for implementing renewable energies have secondary effects. PV systems can generate glare due to optical reflections and hence might be a serious concern. On the one hand, glare could affect safety, e.g. regarding traffic. On the other hand, glare is a constant source of discomfort in vicinities of PV systems. Hence, assessment of glare is decisive for the success of renewable energies near municipalities and traffic zones for the success of solar power. Several courts decided on the change of PV systems and even on their de-installation because of glare effects. Thus, location-based assessments are required to limit potential reflections and to avoid risks for public infrastructure or discomfort of residents. The question arises on how to calculate reflections accurately according to the environment's topography. Our approach is founded in a 3D-based simulation methodology to calculate and visualize reflections based on the geometry of the environment of PV systems. This computational model is implemented by an interactive tool for simulation and visualization. Hence, project planners receive flexible assistance for adjusting the parameters of solar panels amid the planning process and in particular before the installation of a PV system. - Highlights: • Solar panels cause glare that impacts neighborhoods and traffic infrastructures. • Glare might cause disability and discomfort. • 3D environment for the calculation of glare • Interactive tool to simulate and visualize reflections • Impact assessment of solar power plant farms.

  11. 3D animation of facial plastic surgery based on computer graphics

    NASA Astrophysics Data System (ADS)

    Zhang, Zonghua; Zhao, Yan

    2013-12-01

    More and more people, especial women, are getting desired to be more beautiful than ever. To some extent, it becomes true because the plastic surgery of face was capable in the early 20th and even earlier as doctors just dealing with war injures of face. However, the effect of post-operation is not always satisfying since no animation could be seen by the patients beforehand. In this paper, by combining plastic surgery of face and computer graphics, a novel method of simulated appearance of post-operation will be given to demonstrate the modified face from different viewpoints. The 3D human face data are obtained by using 3D fringe pattern imaging systems and CT imaging systems and then converted into STL (STereo Lithography) file format. STL file is made up of small 3D triangular primitives. The triangular mesh can be reconstructed by using hash function. Top triangular meshes in depth out of numbers of triangles must be picked up by ray-casting technique. Mesh deformation is based on the front triangular mesh in the process of simulation, which deforms interest area instead of control points. Experiments on face model show that the proposed 3D animation facial plastic surgery can effectively demonstrate the simulated appearance of post-operation.

  12. Magnetically controllable 3D microtissues based on magnetic microcryogels.

    PubMed

    Liu, Wei; Li, Yaqian; Feng, Siyu; Ning, Jia; Wang, Jingyu; Gou, Maling; Chen, Huijun; Xu, Feng; Du, Yanan

    2014-08-01

    Microtissues on the scale of several hundred microns are a promising cell culture configuration resembling the functional tissue units in vivo. In contrast to conventional cell culture, handling of microtissues poses new challenges such as medium exchange, purification and maintenance of the microtissue integrity. Here, we developed magnetic microcryogels to assist microtissue formation with enhanced controllability and robustness. The magnetic microcryogels were fabricated on-chip by cryogelation and micro-molding which could endure extensive external forces such as fluidic shear stress during pipetting and syringe injection. The magnetically controllable microtissues were applied to constitute a novel separable 3D co-culture system realizing functional enhancement of the hepatic microtissues co-cultured with the stromal microtissues and easy purification of the hepatic microtissues for downstream drug testing. The magnetically controllable microtissues with pre-defined shapes were also applied as building blocks to accelerate the tissue assembly process under magnetic force for bottom-up tissue engineering. Finally, the magnetic microcryogels could be injected in vivo as cell delivery vehicles and tracked by MRI. The injectable magnetic microtissues maintained viability at the injection site indicating good retention and potential applications for cell therapy. The magnetic microcryogels are expected to significantly promote the microtissues as a promising cellular configuration for cell-based applications such as in drug testing, tissue engineering and regenerative therapy. PMID:24736804

  13. 3-D GRMHD Simulations of Disk-Jet Coupling and Associated Variabilities and Emission

    NASA Technical Reports Server (NTRS)

    Nishikawa, K. I.

    2005-01-01

    We have performed the fully three-dimensional general relativistic magnetohydrodynamic (GRMHD) simulation of jet formation from a thin accretion disk around a Schwarzschild black hole with a free-falling corona. The initial simulation results show that a bipolar jet is created as shown by previous two-dimensional axisymmetric simulations with mirror symmetry at the equator. The 3-D simulation ran over one hundred light-crossing time units which is considerably longer than the previous simulations. We show that the jet is initially formed as predicted due in part to magnetic pressure from the twisting the initially uniform magnetic field and from gas pressure associated with shock formation in the region around r = 3 r_S. At later times, the accretion disk becomes thick and the jet fades resulting in a wind that is ejected from the surface of the thickened (torus-like) disk. It should be noted that no streaming matter from a donor is included at the outer boundary in the simulation (an isolated black hole not binary black hole). The wind flows outwards with a wider angle than the initial jet. The widening of the jet is consistent with the outward moving torsional Alfven waves (TAWs). This evolution of disk-jet coupling suggests that the jet fades with a thickened accretion disk due to the lack of streaming material from an accompanying star. We will report initial results of emission calculated based on simulations with Kerr metric using a new ray-tracing method developed by S. Feurst and K. Wu. Images include free-free emission, absorption, and electron scattering. Fluorescent iron line emission and its variabilities from black holes will also be calculated based on simulation results.

  14. Synthetic 3D modeling of active regions and simulation of their multi-wavelength emission

    NASA Astrophysics Data System (ADS)

    Nita, Gelu M.; Fleishman, Gregory; Kuznetsov, Alexey A.; Loukitcheva, Maria A.; Viall, Nicholeen M.; Klimchuk, James A.; Gary, Dale E.

    2015-04-01

    To facilitate the study of solar active regions, we have created a synthetic modeling framework that combines 3D magnetic structures obtained from magnetic extrapolations with simplified 1D thermal models of the chromosphere, transition region, and corona. To handle, visualize, and use such synthetic data cubes to compute multi-wavelength emission maps and compare them with observations, we have undertaken a major enhancement of our simulation tools, GX_Simulator (ftp://sohoftp.nascom.nasa.gov/solarsoft/packages/gx_simulator/), developed earlier for modeling emission from flaring loops. The greatly enhanced, object-based architecture, which now runs on Windows, Mac, and UNIX platform, offers important new capabilities that include the ability to either import 3D density and temperature distribution models, or to assign to each individual voxel numerically defined coronal or chromospheric temperature and densities, or coronal Differential Emission Measure distributions. Due to these new capabilities, the GX_Simulator can now apply parametric heating models involving average properties of the magnetic field lines crossing a given voxel volume, as well as compute and investigate the spatial and spectral properties of radio (to be compared with VLA or EOVSA data), (sub-)millimeter (ALMA), EUV (AIA/SDO), and X-ray (RHESSI) emission calculated from the model. The application integrates shared-object libraries containing fast free-free, gyrosynchrotron, and gyroresonance emission codes developed in FORTRAN and C++, and soft and hard X-ray and EUV codes developed in IDL. We use this tool to model and analyze an active region and compare the synthetic emission maps obtained in different wavelengths with observations.This work was partially supported by NSF grants AGS-1250374, AGS-1262772, NASA grant NNX14AC87G, the Marie Curie International Research Staff Exchange Scheme "Radiosun" (PEOPLE-2011-IRSES-295272), RFBR grants 14-02-91157, 15-02-01089, 15-02-03717, 15

  15. Simulations of Coulomb systems with slab geometry using an efficient 3D Ewald summation method

    NASA Astrophysics Data System (ADS)

    dos Santos, Alexandre P.; Girotto, Matheus; Levin, Yan

    2016-04-01

    We present a new approach to efficiently simulate electrolytes confined between infinite charged walls using a 3d Ewald summation method. The optimal performance is achieved by separating the electrostatic potential produced by the charged walls from the electrostatic potential of electrolyte. The electric field produced by the 3d periodic images of the walls is constant inside the simulation cell, with the field produced by the transverse images of the charged plates canceling out. The non-neutral confined electrolyte in an external potential can be simulated using 3d Ewald summation with a suitable renormalization of the electrostatic energy, to remove a divergence, and a correction that accounts for the conditional convergence of the resulting lattice sum. The new algorithm is at least an order of magnitude more rapid than the usual simulation methods for the slab geometry and can be further sped up by adopting a particle-particle particle-mesh approach.

  16. Prototype Development Capabilities of 3D Spatial Interactions and Failures During Scenario Simulation

    SciTech Connect

    Steven Prescott; Ramprasad Sampath; Curtis Smith; Tony Koonce

    2014-09-01

    Computers have been used for 3D modeling and simulation, but only recently have computational resources been able to give realistic results in a reasonable time frame for large complex models. This report addressed the methods, techniques, and resources used to develop a prototype for using 3D modeling and simulation engine to improve risk analysis and evaluate reactor structures and components for a given scenario. The simulations done for this evaluation were focused on external events, specifically tsunami floods, for a hypothetical nuclear power facility on a coastline.

  17. A global model simulation for 3-D radiative transfer impact on surface hydrology over Sierra Nevada and Rocky Mountains

    DOE PAGESBeta

    Lee, W. -L.; Gu, Y.; Liou, K. N.; Leung, L. R.; Hsu, H. -H.

    2014-12-15

    We investigate 3-D mountain effects on solar flux distributions and their impact on surface hydrology over the Western United States, specifically the Rocky Mountains and Sierra Nevada using CCSM4 (CAM4/CLM4) global model with a 0.23° × 0.31° resolution for simulations over 6 years. In 3-D radiative transfer parameterization, we have updated surface topography data from a resolution of 1 km to 90 m to improve parameterization accuracy. In addition, we have also modified the upward-flux deviation [3-D - PP (plane-parallel)] adjustment to ensure that energy balance at the surface is conserved in global climate simulations based on 3-D radiation parameterization.more » We show that deviations of the net surface fluxes are not only affected by 3-D mountains, but also influenced by feedbacks of cloud and snow in association with the long-term simulations. Deviations in sensible heat and surface temperature generally follow the patterns of net surface solar flux. The monthly snow water equivalent (SWE) deviations show an increase in lower elevations due to reduced snowmelt, leading to a reduction in cumulative runoff. Over higher elevation areas, negative SWE deviations are found because of increased solar radiation available at the surface. Simulated precipitation increases for lower elevations, while decreases for higher elevations with a minimum in April. Liquid runoff significantly decreases in higher elevations after April due to reduced SWE and precipitation.« less

  18. A global model simulation for 3-D radiative transfer impact on surface hydrology over Sierra Nevada and Rocky Mountains

    NASA Astrophysics Data System (ADS)

    Lee, W.-L.; Gu, Y.; Liou, K. N.; Leung, L. R.; Hsu, H.-H.

    2014-12-01

    We investigate 3-D mountain effects on solar flux distributions and their impact on surface hydrology over the Western United States, specifically the Rocky Mountains and Sierra Nevada using CCSM4 (CAM4/CLM4) global model with a 0.23° × 0.31° resolution for simulations over 6 years. In 3-D radiative transfer parameterization, we have updated surface topography data from a resolution of 1 km to 90 m to improve parameterization accuracy. In addition, we have also modified the upward-flux deviation [3-D - PP (plane-parallel)] adjustment to ensure that energy balance at the surface is conserved in global climate simulations based on 3-D radiation parameterization. We show that deviations of the net surface fluxes are not only affected by 3-D mountains, but also influenced by feedbacks of cloud and snow in association with the long-term simulations. Deviations in sensible heat and surface temperature generally follow the patterns of net surface solar flux. The monthly snow water equivalent (SWE) deviations show an increase in lower elevations due to reduced snowmelt, leading to a reduction in cumulative runoff. Over higher elevation areas, negative SWE deviations are found because of increased solar radiation available at the surface. Simulated precipitation increases for lower elevations, while decreases for higher elevations with a minimum in April. Liquid runoff significantly decreases in higher elevations after April due to reduced SWE and precipitation.

  19. Tropospheric vertical column densities of NO2 over managed dryland ecosystems (Xinjiang, China): MAX-DOAS measurements vs. 3-D dispersion model simulations based on laboratory-derived NO emission from soil samples

    NASA Astrophysics Data System (ADS)

    Mamtimin, B.; Behrendt, T.; Badawy, M. M.; Wagner, T.; Qi, Y.; Wu, Z.; Meixner, F. X.

    2015-01-01

    We report on MAX-DOAS observations of NO2 over an oasis-ecotone-desert ecosystem in NW China. There, local ambient NO2 concentrations originate from enhanced biogenic NO emission of intensively managed soils. Our target oasis "Milan" is located at the southern edge of the Taklimakan desert, very remote and well isolated from other potential anthropogenic and biogenic NOx sources. Four observation sites for MAX-DOAS measurements were selected, at the oasis centre, downwind and upwind of the oasis, and in the desert. Biogenic NO emissions in terms of (i) soil moisture and (ii) soil temperature of Milan oasis (iii) different land-cover type sub-units (cotton, Jujube trees, cotton/Jujube mixture, desert) were quantified by laboratory incubation of corresponding soil samples. Net potential NO fluxes were up-scaled to oasis scale by areal distribution and classification of land-cover types derived from satellite images using GIS techniques. A Lagrangian dispersion model (LASAT, Lagrangian Simulation of Aerosol Transport) was used to calculate the dispersion of soil emitted NO into the atmospheric boundary layer over Milan oasis. Three-dimensional (3-D) NO concentrations (30 m horizontal resolution) have been converted to 3-D NO2 concentrations, assuming photostationary state conditions. NO2 column densities were simulated by suitable vertical integration of modelled 3-D NO2 concentrations at those downwind and upwind locations, where the MAX-DOAS measurements were performed. Downwind-upwind differences (a direct measure of Milan oasis' contribution to the areal increase of ambient NO2 concentration) of measured and simulated slant (as well as vertical) NO2 column densities show excellent agreement. This agreement is considered as the first successful attempt to prove the validity of the chosen approach to up-scale laboratory-derived biogenic NO fluxes to ecosystem field conditions, i.e. from the spatial scale of a soil sample (cm2) to the size of an entire agricultural

  20. Simulation of a 3D unsteady flow in an axial turbine stage

    NASA Astrophysics Data System (ADS)

    Straka, Petr

    2012-04-01

    The contribution deals with a numerical simulation of an unsteady flow in an axial turbine stage. The solution is performed using an in-house numerical code developed in the Aeronautical and Test Institute, Plc. in Prague. The numerical code is based on a finite volume discretization of governing equations (Favre averaged Navier-Stokes equations) and a two-equations turbulence model. The temporal integration is based on the implicit second-order backward Euler formula, which is realized through the iteration process in dual time. The proposed numerical method is used for solution of the 3D, unsteady, viscous turbulent flow of a perfect gas in the axial turbine stage. The flow path consists of an input nozzle, stator blade-wheel, rotor blade-wheel, a shroud-seal gap and a diffuser. Attention is paid to the influence of a secondary flow structures, such as generated vortices and flow in shroud-seal gap.

  1. Cognitive/emotional models for human behavior representation in 3D avatar simulations

    NASA Astrophysics Data System (ADS)

    Peterson, James K.

    2004-08-01

    Simplified models of human cognition and emotional response are presented which are based on models of auditory/ visual polymodal fusion. At the core of these models is a computational model of Area 37 of the temporal cortex which is based on new isocortex models presented recently by Grossberg. These models are trained using carefully chosen auditory (musical sequences), visual (paintings) and higher level abstract (meta level) data obtained from studies of how optimization strategies are chosen in response to outside managerial inputs. The software modules developed are then used as inputs to character generation codes in standard 3D virtual world simulations. The auditory and visual training data also enable the development of simple music and painting composition generators which significantly enhance one's ability to validate the cognitive model. The cognitive models are handled as interacting software agents implemented as CORBA objects to allow the use of multiple language coding choices (C++, Java, Python etc) and efficient use of legacy code.

  2. An improved virtual aberration model to simulate mask 3D and resist effects

    NASA Astrophysics Data System (ADS)

    Kanaya, Reiji; Fujii, Koichi; Imai, Motokatsu; Matsuyama, Tomoyuki; Tsuzuki, Takao; Lin, Qun Ying

    2015-03-01

    As shrinkage of design features progresses, the difference in best focus positions among different patterns is becoming a fatal issue, especially when many patterns co-exist in a layer. The problem arises from three major factors: aberrations of projection optics, mask 3D topography effects, and resist thickness effects. Aberrations in projection optics have already been thoroughly investigated, but mask 3D topography effects and resist thickness effects are still under study. It is well known that mask 3D topography effects can be simulated by various Electro-magnetic Field (EMF) analysis methods. However, it is almost impossible to use them for full chip modeling because all of these methods are extremely computationally intensive. Consequently, they usually apply only to a limited range of mask patterns which are about tens of square micro meters in area. Resist thickness effects on best focus positions are rarely treated as a topic of lithography investigations. Resist 3D effects are treated mostly for resist profile prediction, which also requires an intensive EMF analysis when one needs to predict it accurately. In this paper, we present a simplified Virtual Aberration (VA) model to simulate both mask 3D induced effects and resist thickness effects. A conventional simulator, when applied with this simplified method, can factor in both mask 3D topography effects and resist thickness effects. Thus it can be used to model inter-pattern Best Focus Difference (BFD) issues with the least amount of rigorous EMF analysis.

  3. 3D Multistage Simulation of Each Component of the GE90 Turbofan Engine

    NASA Technical Reports Server (NTRS)

    Turner, Mark; Topp, Dave; Veres, Joe

    1999-01-01

    A 3D multistage simulation of each component of the GE90 Turbofan engine has been made. This includes 49 blade rows. A coupled simulation of all blade rows will be made very soon. The simulation is running using two levels of parallelism. The first level is on a blade row basis with information shared using files. The second level is using a grid domain decomposition with information shared using MPI. Timings will be shown for running on the SP2, an SGI Origin and a distributed system of HP workstations. On the HP workstations, the CHIMP version of MPI is used, with queuing supplied by LSF (Load Sharing Facility). A script-based control system is used to ensure reliability. An MPEG movie illustrating the flow simulation of the engine has been created using PV3, a parallel visualization library created by Bob Haimes of MIT. PVM is used to create a virtual machine from 10 HP workstations and display on an SGI workstation. A representative component simulation will be compared to rig data to demonstrate its usefulness in turbomachinery design and analysis.

  4. Structural response to 3D simulated earthquake motions in San Bernardino Valley

    USGS Publications Warehouse

    Safak, E.; Frankel, A.

    1994-01-01

    Structural repsonse to one- and three-dimensional (3D) simulated motions in San Bernardino Valley from a hypothetical earthquake along the San Andreas fault with moment magnitude 6.5 and rupture length of 30km is investigated. The results show that the ground motions and the structural response vary dramatically with the type of simulation and the location. -from Authors

  5. 3D watershed-based segmentation of internal structures within MR brain images

    NASA Astrophysics Data System (ADS)

    Bueno, Gloria; Musse, Olivier; Heitz, Fabrice; Armspach, Jean-Paul

    2000-06-01

    In this paper an image-based method founded on mathematical morphology is presented in order to facilitate the segmentation of cerebral structures on 3D magnetic resonance images (MRIs). The segmentation is described as an immersion simulation, applied to the modified gradient image, modeled by a generated 3D region adjacency graph (RAG). The segmentation relies on two main processes: homotopy modification and contour decision. The first one is achieved by a marker extraction stage where homogeneous 3D regions are identified in order to attribute an influence zone only to relevant minima of the image. This stage uses contrasted regions from morphological reconstruction and labeled flat regions constrained by the RAG. The goal of the decision stage is to precisely locate the contours of regions detected by the marker extraction. This decision is performed by a 3D extension of the watershed transform. Upon completion of the segmentation, the outcome of the preceding process is presented to the user for manual selection of the structures of interest (SOI). Results of this approach are described and illustrated with examples of segmented 3D MRIs of the human head.

  6. The 3-D world modeling with updating capability based on combinatorial geometry

    NASA Technical Reports Server (NTRS)

    Goldstein, M.; Pin, F. G.; Desaussure, G.; Weisbin, C. R.

    1987-01-01

    A 3-D world modeling technique using range data is discribed. Range data quantify the distances from the sensor focal plane to the object surface, i.e., the 3-D coordinates of discrete points on the object surface are known. The approach proposed herein for 3-D world modeling is based on the Combinatorial Geometry (CG) method which is widely used in Monte Carlo particle transport calculations. First, each measured point on the object surface is surrounded by a small sphere with a radius determined by the range to that point. Then, the 3-D shapes of the visible surfaces are obtained by taking the (Boolean) union of all the spheres. The result is an unambiguous representation of the object's boundary surfaces. The pre-learned partial knowledge of the environment can be also represented using the CG Method with a relatively small amount of data. Using the CG type of representation, distances in desired directions to boundary surfaces of various objects are efficiently calculated. This feature is particularly useful for continuously verifying the world model against the data provided by a range finder, and for integrating range data from successive locations of the robot during motion. The efficiency of the proposed approach is illustrated by simulations of a spherical robot in a 3-D room in the presence of moving obstacles and inadequate prelearned partial knowledge of the environment.

  7. A graphical user interface for calculation of 3D dose distribution using Monte Carlo simulations

    NASA Astrophysics Data System (ADS)

    Chow, J. C. L.; Leung, M. K. K.

    2008-02-01

    A software graphical user interface (GUI) for calculation of 3D dose distribution using Monte Carlo (MC) simulation is developed using MATLAB. This GUI (DOSCTP) provides a user-friendly platform for DICOM CT-based dose calculation using EGSnrcMP-based DOSXYZnrc code. It offers numerous features not found in DOSXYZnrc, such as the ability to use multiple beams from different phase-space files, and has built-in dose analysis and visualization tools. DOSCTP is written completely in MATLAB, with integrated access to DOSXYZnrc and CTCREATE. The program function may be divided into four subgroups, namely, beam placement, MC simulation with DOSXYZnrc, dose visualization, and export. Each is controlled by separate routines. The verification of DOSCTP was carried out by comparing plans with different beam arrangements (multi-beam/photon arc) on an inhomogeneous phantom as well as patient CT between the GUI and Pinnacle3. DOSCTP was developed and verified with the following features: (1) a built-in voxel editor to modify CT-based DOSXYZnrc phantoms for research purposes; (2) multi-beam placement is possible, which cannot be achieved using the current DOSXYZnrc code; (3) the treatment plan, including the dose distributions, contours and image set can be exported to a commercial treatment planning system such as Pinnacle3 or to CERR using RTOG format for plan evaluation and comparison; (4) a built-in RTOG-compatible dose reviewer for dose visualization and analysis such as finding the volume of hot/cold spots in the 3D dose distributions based on a user threshold. DOSCTP greatly simplifies the use of DOSXYZnrc and CTCREATE, and offers numerous features that not found in the original user-code. Moreover, since phase-space beams can be defined and generated by the user, it is a particularly useful tool to carry out plans using specifically designed irradiators/accelerators that cannot be found in the Linac library of commercial treatment planning systems.

  8. Automated 3D renal segmentation based on image partitioning

    NASA Astrophysics Data System (ADS)

    Yeghiazaryan, Varduhi; Voiculescu, Irina D.

    2016-03-01

    Despite several decades of research into segmentation techniques, automated medical image segmentation is barely usable in a clinical context, and still at vast user time expense. This paper illustrates unsupervised organ segmentation through the use of a novel automated labelling approximation algorithm followed by a hypersurface front propagation method. The approximation stage relies on a pre-computed image partition forest obtained directly from CT scan data. We have implemented all procedures to operate directly on 3D volumes, rather than slice-by-slice, because our algorithms are dimensionality-independent. The results picture segmentations which identify kidneys, but can easily be extrapolated to other body parts. Quantitative analysis of our automated segmentation compared against hand-segmented gold standards indicates an average Dice similarity coefficient of 90%. Results were obtained over volumes of CT data with 9 kidneys, computing both volume-based similarity measures (such as the Dice and Jaccard coefficients, true positive volume fraction) and size-based measures (such as the relative volume difference). The analysis considered both healthy and diseased kidneys, although extreme pathological cases were excluded from the overall count. Such cases are difficult to segment both manually and automatically due to the large amplitude of Hounsfield unit distribution in the scan, and the wide spread of the tumorous tissue inside the abdomen. In the case of kidneys that have maintained their shape, the similarity range lies around the values obtained for inter-operator variability. Whilst the procedure is fully automated, our tools also provide a light level of manual editing.

  9. The simulation of 3D mass models in 2D digital mammography and breast tomosynthesis

    SciTech Connect

    Shaheen, Eman De Keyzer, Frederik; Bosmans, Hilde; Ongeval, Chantal Van; Dance, David R.; Young, Kenneth C.

    2014-08-15

    suggestive for malignancy (BIRADS 5) indicating the required variety of shapes and margins of these models. The assessment of the BIRADS scores for all observers indicated good agreement based on Kendall's coefficient for both the 2D and the tomosynthesis evaluations. The paired analysis of the BIRADS scores between 2D and tomosynthesis for each observer revealed consistent behavior for the real and simulated masses. Conclusions: A database of 3D mass models, with variety of shapes and margins, was validated for the realism of their appearance for 2D digital mammography and for breast tomosynthesis. This database is suitable for use in future observer performance studies whether in virtual clinical trials or in patient images with simulated lesions.

  10. Elderly Healthcare Monitoring Using an Avatar-Based 3D Virtual Environment

    PubMed Central

    Pouke, Matti; Häkkilä, Jonna

    2013-01-01

    Homecare systems for elderly people are becoming increasingly important due to both economic reasons as well as patients’ preferences. Sensor-based surveillance technologies are an expected future trend, but research so far has devoted little attention to the User Interface (UI) design of such systems and the user-centric design approach. In this paper, we explore the possibilities of an avatar-based 3D visualization system, which exploits wearable sensors and human activity simulations. We present a technical prototype and the evaluation of alternative concept designs for UIs based on a 3D virtual world. The evaluation was conducted with homecare providers through focus groups and an online survey. Our results show firstly that systems taking advantage of 3D virtual world visualization techniques have potential especially due to the privacy preserving and simplified information presentation style, and secondly that simple representations and glancability should be emphasized in the design. The identified key use cases highlight that avatar-based 3D presentations can be helpful if they provide an overview as well as details on demand. PMID:24351747

  11. 3D affine registration using teaching-learning based optimization

    NASA Astrophysics Data System (ADS)

    Jani, Ashish; Savsani, Vimal; Pandya, Abhijit

    2013-09-01

    3D image registration is an emerging research field in the study of computer vision. In this paper, two effective global optimization methods are considered for the 3D registration of point clouds. Experiments were conducted by applying each algorithm and their performance was evaluated with respect to rigidity, similarity and affine transformations. Comparison of algorithms and its effectiveness was tested for the average performance to find the global solution for minimizing the error in the terms of distance between the model cloud and the data cloud. The parameters for the transformation matrix were considered as the design variables. Further comparisons of the considered methods were done for the computational effort, computational time and the convergence of the algorithm. The results reveal that the use of TLBO was outstanding for image processing application involving 3D registration. [Figure not available: see fulltext.

  12. Collaboration on Scene Graph Based 3D Data

    NASA Astrophysics Data System (ADS)

    Ammon, Lorenz; Bieri, Hanspeter

    Professional 3D digital content creation tools, like Alias Maya or discreet 3ds max, offer only limited support for a team of artists to work on a 3D model collaboratively. We present a scene graph repository system that enables fine-grained collaboration on scenes built using standard 3D DCC tools by applying the concept of collaborative versions to a general attributed scene graph. Artists can work on the same scene in parallel without locking out each other. The artists' changes to a scene are regularly merged to ensure that all artists can see each others progress and collaborate on current data. We introduce the concept of indirect changes and indirect conflicts to systematically inspect the effects that collaborative changes have on a scene. Inspecting indirect conflicts helps maintaining scene consistency by systematically looking for inconsistencies at the right places.

  13. Surface 3D nanostructuring by tightly focused laser pulse: simulations by Lagrangian code and molecular dynamics

    NASA Astrophysics Data System (ADS)

    Inogamov, Nail A.; Zhakhovsky, Vasily V.

    2016-02-01

    There are many important applications in which the ultrashort diffraction-limited and therefore tightly focused laser pulses irradiates metal films mounted on dielectric substrate. Here we present the detailed picture of laser peeling and 3D structure formation of the thin (relative to a depth of a heat affected zone in the bulk targets) gold films on glass substrate. The underlying physics of such diffraction-limited laser peeling was not well understood previously. Our approach is based on a physical model which takes into consideration the new calculations of the two-temperature (2T) equation of state (2T EoS) and the two-temperature transport coefficients together with the coupling parameter between electron and ion subsystems. The usage of the 2T EoS and the kinetic coefficients is required because absorption of an ultrashort pulse with duration of 10-1000 fs excites electron subsystem of metal and transfers substance into the 2T state with hot electrons (typical electron temperatures 1-3 eV) and much colder ions. It is shown that formation of submicrometer-sized 3D structures is a result of the electron-ion energy transfer, melting, and delamination of film from substrate under combined action of electron and ion pressures, capillary deceleration of the delaminated liquid metal or semiconductor, and ultrafast freezing of molten material. We found that the freezing is going in non-equilibrium regime with strongly overcooled liquid phase. In this case the Stefan approximation is non-applicable because the solidification front speed is limited by the diffusion rate of atoms in the molten material. To solve the problem we have developed the 2T Lagrangian code including all this reach physics in. We also used the high-performance combined Monte- Carlo and molecular dynamics code for simulation of surface 3D nanostructuring at later times after completion of electron-ion relaxation.

  14. A faster method for 3D/2D medical image registration--a simulation study.

    PubMed

    Birkfellner, Wolfgang; Wirth, Joachim; Burgstaller, Wolfgang; Baumann, Bernard; Staedele, Harald; Hammer, Beat; Gellrich, Niels Claudius; Jacob, Augustinus Ludwig; Regazzoni, Pietro; Messmer, Peter

    2003-08-21

    3D/2D patient-to-computed-tomography (CT) registration is a method to determine a transformation that maps two coordinate systems by comparing a projection image rendered from CT to a real projection image. Iterative variation of the CT's position between rendering steps finally leads to exact registration. Applications include exact patient positioning in radiation therapy, calibration of surgical robots, and pose estimation in computer-aided surgery. One of the problems associated with 3D/2D registration is the fact that finding a registration includes solving a minimization problem in six degrees of freedom (dof) in motion. This results in considerable time requirements since for each iteration step at least one volume rendering has to be computed. We show that by choosing an appropriate world coordinate system and by applying a 2D/2D registration method in each iteration step, the number of iterations can be grossly reduced from n6 to n5. Here, n is the number of discrete variations around a given coordinate. Depending on the configuration of the optimization algorithm, this reduces the total number of iterations necessary to at least 1/3 of it's original value. The method was implemented and extensively tested on simulated x-ray images of a tibia, a pelvis and a skull base. When using one projective image and a discrete full parameter space search for solving the optimization problem, average accuracy was found to be 1.0 +/- 0.6(degrees) and 4.1 +/- 1.9 (mm) for a registration in six parameters, and 1.0 +/- 0.7(degrees) and 4.2 +/- 1.6 (mm) when using the 5 + 1 dof method described in this paper. Time requirements were reduced by a factor 3.1. We conclude that this hardware-independent optimization of 3D/2D registration is a step towards increasing the acceptance of this promising method for a wide number of clinical applications. PMID:12974581

  15. Fractal geometry of sedimentary rocks: simulation in 3-D using a Relaxed Bidisperse Ballistic Deposition Model

    NASA Astrophysics Data System (ADS)

    Giri, Abhra; Tarafdar, Sujata; Gouze, Philippe; Dutta, Tapati

    2013-03-01

    Several studies, both theoretical and experimental, show that sedimentary rocks have a fractal pore-grain interface. In this paper a computer simulated 3-D sedimentary rock structure generated by the Relaxed Ballistic Bidisperse Deposition Model (RBBDM), is investigated to characterize the micro structure of its pores. The pore volume and the rock-pore interface show the same fractal dimension indicating that the pore volume is a fractal. The two point density correlation is computed for the pore space and the results compare favourably with the range reported from experiments. An array of 2-D X-ray tomography micrograph sections of a real sedimentary rock, an oolitic limestone (pure calcite) from the Mondeville formation of Middle Jurassic age (Paris Basin, France), was used to generate a 3-D bitmap. The 3-D real rock sample generated in this manner, was analysed for similar studies as the simulated structure. The results were compared with those obtained from simulation. The simulation results agree qualitatively with the real rock sample. Diffusion through the connected pore space of the simulated structure was studied using a random walk algorithm and the results compared with the similar simulation study done on the 3-D oolitic limestone specimen. In both cases diffusion was found to be anomalous indicating that the sedimentary rock has a fractal geometry. The favourable comparability of results between the simulated and real rock supports the usefulness of the model of sedimentary rock generation which can be applicable to transport phenomena.

  16. 3D Simulation of the Entire Process of Earthquake Generation at Subduction-Zone Plate Boundaries

    NASA Astrophysics Data System (ADS)

    Matsu'Ura, M.; Hashimoto, C.; Fukuyama, E.

    2003-12-01

    In general, the entire process of earthquake generation consists of tectonic loading due to relative plate motion, quasi-static rupture nucleation, dynamic rupture propagation and stop, and restoration of fault strength. This process can be completely described by a coupled nonlinear system, which consists of an elastic/viscoelastic slip-response function that relates fault slip to shear stress change and a fault constitutive law that prescribes change in shear strength with fault slip and contact time. The shear stress and the shear strength are related with each other through boundary conditions on the fault. The driving force of this system is observed relative plate motion. The system to describe the earthquake generation cycle is conceptually quite simple. The complexity in practical modelling mainly comes from complexity in structure of the real earth. As a product of Crustal Activity Modelling Program (CAMP), which is one of the three main programs composing the Solid Earth Simulator project (1998-2003) promoted by MEXT, we have completed a physics-based predictive simulation model for the entire process of earthquake generation cycles in and around Japan, where the four plates of Pacific, North American, Philippine Sea and Eurasian are interacting with each other in a very complicated way. The total simulation system consists of a crust-mantle structure model, a tectonic loading model and a dynamic rupture model. First, we constructed a realistic 3D standard model of plate interfaces in and around Japan by applying an inversion technique to ISC hypocenter distribution data, and computed viscoelastic slip-response functions for this structure model. Second, we introduced the slip- and time-dependent fault constitutive law with an inherent strength-restoration mechanism as a basic equation governing the entire process of earthquake generation. Third, combining all these elements, we developed a simulation model for quasi-static stress accumulation due to

  17. Axisymmetric Implementation for 3D-Based DSMC Codes

    NASA Technical Reports Server (NTRS)

    Stewart, Benedicte; Lumpkin, F. E.; LeBeau, G. J.

    2011-01-01

    The primary objective in developing NASA s DSMC Analysis Code (DAC) was to provide a high fidelity modeling tool for 3D rarefied flows such as vacuum plume impingement and hypersonic re-entry flows [1]. The initial implementation has been expanded over time to offer other capabilities including a novel axisymmetric implementation. Because of the inherently 3D nature of DAC, this axisymmetric implementation uses a 3D Cartesian domain and 3D surfaces. Molecules are moved in all three dimensions but their movements are limited by physical walls to a small wedge centered on the plane of symmetry (Figure 1). Unfortunately, far from the axis of symmetry, the cell size in the direction perpendicular to the plane of symmetry (the Z-direction) may become large compared to the flow mean free path. This frequently results in inaccuracies in these regions of the domain. A new axisymmetric implementation is presented which aims to solve this issue by using Bird s approach for the molecular movement while preserving the 3D nature of the DAC software [2]. First, the computational domain is similar to that previously used such that a wedge must still be used to define the inflow surface and solid walls within the domain. As before molecules are created inside the inflow wedge triangles but they are now rotated back to the symmetry plane. During the move step, molecules are moved in 3D but instead of interacting with the wedge walls, the molecules are rotated back to the plane of symmetry at the end of the move step. This new implementation was tested for multiple flows over axisymmetric shapes, including a sphere, a cone, a double cone and a hollow cylinder. Comparisons to previous DSMC solutions and experiments, when available, are made.

  18. Microseismic network design assessment based on 3D ray tracing

    NASA Astrophysics Data System (ADS)

    Näsholm, Sven Peter; Wuestefeld, Andreas; Lubrano-Lavadera, Paul; Lang, Dominik; Kaschwich, Tina; Oye, Volker

    2016-04-01

    There is increasing demand on the versatility of microseismic monitoring networks. In early projects, being able to locate any triggers was considered a success. These early successes led to a better understanding of how to extract value from microseismic results. Today operators, regulators, and service providers work closely together in order to find the optimum network design to meet various requirements. In the current study we demonstrate an integrated and streamlined network capability assessment approach. It is intended for use during the microseismic network design process prior to installation. The assessments are derived from 3D ray tracing between a grid of event points and the sensors. Three aspects are discussed: 1) Magnitude of completeness or detection limit; 2) Event location accuracy; and 3) Ground-motion hazard. The network capability parameters 1) and 2) are estimated at all hypothetic event locations and are presented in the form of maps given a seismic sensor coordinate scenario. In addition, the ray tracing traveltimes permit to estimate the point-spread-functions (PSFs) at the event grid points. PSFs are useful in assessing the resolution and focusing capability of the network for stacking-based event location and imaging methods. We estimate the performance for a hypothetical network case with 11 sensors. We consider the well-documented region around the San Andreas Fault Observatory at Depth (SAFOD) located north of Parkfield, California. The ray tracing is done through a detailed velocity model which covers a 26.2 by 21.2 km wide area around the SAFOD drill site with a resolution of 200 m both for the P-and S-wave velocities. Systematic network capability assessment for different sensor site scenarios prior to installation facilitates finding a final design which meets the survey objectives.

  19. Modeling blood flow circulation in intracranial arterial networks: a comparative 3D/1D simulation study.

    PubMed

    Grinberg, L; Cheever, E; Anor, T; Madsen, J R; Karniadakis, G E

    2011-01-01

    We compare results from numerical simulations of pulsatile blood flow in two patient-specific intracranial arterial networks using one-dimensional (1D) and three-dimensional (3D) models. Specifically, we focus on the pressure and flowrate distribution at different segments of the network computed by the two models. Results obtained with 1D and 3D models with rigid walls show good agreement in massflow distribution at tens of arterial junctions and also in pressure drop along the arteries. The 3D simulations with the rigid walls predict higher amplitude of the flowrate and pressure temporal oscillations than the 1D simulations with compliant walls at various segments even for small time-variations in the arterial cross-sectional areas. Sensitivity of the flow and pressure with respect to variation in the elasticity parameters is investigated with the 1D model. PMID:20661645

  20. Full 3-D OCT-based pseudophakic custom computer eye model.

    PubMed

    Sun, M; Pérez-Merino, P; Martinez-Enriquez, E; Velasco-Ocana, M; Marcos, S

    2016-03-01

    We compared measured wave aberrations in pseudophakic eyes implanted with aspheric intraocular lenses (IOLs) with simulated aberrations from numerical ray tracing on customized computer eye models, built using quantitative 3-D OCT-based patient-specific ocular geometry. Experimental and simulated aberrations show high correlation (R = 0.93; p<0.0001) and similarity (RMS for high order aberrations discrepancies within 23.58%). This study shows that full OCT-based pseudophakic custom computer eye models allow understanding the relative contribution of optical geometrical and surgically-related factors to image quality, and are an excellent tool for characterizing and improving cataract surgery. PMID:27231608

  1. Full 3-D OCT-based pseudophakic custom computer eye model

    PubMed Central

    Sun, M.; Pérez-Merino, P.; Martinez-Enriquez, E.; Velasco-Ocana, M.; Marcos, S.

    2016-01-01

    We compared measured wave aberrations in pseudophakic eyes implanted with aspheric intraocular lenses (IOLs) with simulated aberrations from numerical ray tracing on customized computer eye models, built using quantitative 3-D OCT-based patient-specific ocular geometry. Experimental and simulated aberrations show high correlation (R = 0.93; p<0.0001) and similarity (RMS for high order aberrations discrepancies within 23.58%). This study shows that full OCT-based pseudophakic custom computer eye models allow understanding the relative contribution of optical geometrical and surgically-related factors to image quality, and are an excellent tool for characterizing and improving cataract surgery. PMID:27231608

  2. Large-eddy simulation of 3D turbulent flow past a complete marine hydrokinetic turbine

    NASA Astrophysics Data System (ADS)

    Kang, S.; Sotiropoulos, F.

    2011-12-01

    A high-resolution computational framework was recently developed by Kang et al (Adv. Water Resour., submitted) for simulating three-dimensional (3D), turbulent flow past real-life, complete marine hydrokinetic (MHK) turbine configurations. In this model the complex turbine geometry is resolved by employing the curvilinear immersed boundary (CURVIB) method, which solves the 3D unsteady incompressible Navier-Stokes equations in generalized curvilinear domains with embedded arbitrarily complex, moving and/or stationary immersed boundaries (Ge and Sotiropoulos, 2007). Turbulence is simulated using the large-eddy simulation (LES) approach adapted in the context of the CURVIB method, with a wall model based on solving the simplified boundary layer equations used to reconstruct boundary conditions near all solid surfaces (Kang et al., 2011). The model can resolve the flow patterns generated by the rotor and all stationary components of the turbine as well as the interactions of the flow structures with the channel bed. We apply this model to carry out LES of the flow past the model-size hydrokinetic turbine deployed in the St. Anthony Falls Laboratory main channel. The mean velocities and second-order turbulence statistics measured in the downstream wake using acoustic Doppler velocimetry (ADV) are compared with the LES results. The comparisons show that the computed mean velocities and turbulent stresses are in good agreement with the measurements. The high-resolution LES data are used to explore physically important downstream flow characteristics such as the time-averaged wake structure, recovery of cross-sectionally averaged power potential, near-bed scour potential, etc. This work is supported by Verdant Power.

  3. A Completely 3D Model for the Simulation of Mechanized Tunnel Excavation

    NASA Astrophysics Data System (ADS)

    Zhao, Kai; Janutolo, Michele; Barla, Giovanni

    2012-07-01

    For long deep tunnels as currently under construction through the Alps, mechanized excavation using tunnel boring machines (TBMs) contributes significantly to savings in construction time and costs. Questions are, however, posed due to the severe ground conditions which are in cases anticipated or encountered along the main tunnel alignment. A major geological hazard is the squeezing of weak rocks, but also brittle failure can represent a significant problem. For the design of mechanized tunnelling in such conditions, the complex interaction between the rock mass, the tunnel machine, its system components, and the tunnel support need to be analysed in detail and this can be carried out by three-dimensional (3D) models including all these components. However, the state-of-the-art shows that very few fully 3D models for mechanical deep tunnel excavation in rock have been developed so far. A completely three-dimensional simulator of mechanised tunnel excavation is presented in this paper. The TBM of reference is a technologically advanced double shield TBM designed to cope with both conditions. Design analyses with reference to spalling hazard along the Brenner and squeezing along the Lyon-Turin Base Tunnel are discussed.

  4. Simulating binocular vision for no-reference 3D visual quality measurement.

    PubMed

    Zhou, Wu-Jie; Yu, Lu; Wu, Ming-Wei

    2015-09-01

    Perceptual quality measurement of three-dimensional (3D) visual signals has become a fundamental challenge in 3D imaging fields. This paper proposes a novel no-reference (NR) 3D visual quality measurement (VQM) metric that uses simulations of the primary visual cortex (V1) of binocular vision. As the major technical contribution of this study, perceptual properties of simple and complex cells are considered for NR 3D-VQM. More specifically, the metric simulates the receptive fields of simple cells (one class of V1 neurons) using Gaussian derivative functions, and the receptive fields of complex cells (the other class of V1 neurons) using disparity energy responses and binocular rivalry responses. Subsequently, various quality-aware features are extracted from the primary visual cortex; these will change in the presence of distortions. Finally, those features are mapped to the subjective quality score of the distorted 3D visual signal by using support vector regression (SVR). Experiments on two publicly available 3D databases confirm the effectiveness of our proposed metric, compared to the relevant full-reference (FR) and NR metrics. PMID:26368467

  5. Mixed reality orthognathic surgical simulation by entity model manipulation and 3D-image display

    NASA Astrophysics Data System (ADS)

    Shimonagayoshi, Tatsunari; Aoki, Yoshimitsu; Fushima, Kenji; Kobayashi, Masaru

    2005-12-01

    In orthognathic surgery, the framing of 3D-surgical planning that considers the balance between the front and back positions and the symmetry of the jawbone, as well as the dental occlusion of teeth, is essential. In this study, a support system for orthodontic surgery to visualize the changes in the mandible and the occlusal condition and to determine the optimum position in mandibular osteotomy has been developed. By integrating the operating portion of a tooth model that is to determine the optimum occlusal position by manipulating the entity tooth model and the 3D-CT skeletal images (3D image display portion) that are simultaneously displayed in real-time, the determination of the mandibular position and posture in which the improvement of skeletal morphology and occlusal condition is considered, is possible. The realistic operation of the entity model and the virtual 3D image display enabled the construction of a surgical simulation system that involves augmented reality.

  6. 3D YSO accretion shock simulations: a study of the magnetic, chromospheric and stochastic flow effects

    NASA Astrophysics Data System (ADS)

    Matsakos, T.; Chièze, J.-P.; Stehlé, C.; González, M.; Ibgui, L.; de Sá, L.; Lanz, T.; Orlando, S.; Bonito, R.; Argiroffi, C.; Reale, F.; Peres, G.

    2014-08-01

    The structure and dynamics of young stellar object (YSO) accretion shocks depend strongly on the local magnetic field strength and configuration, as well as on the radiative transfer effects responsible for the energy losses. We present the first 3D YSO shock simulations of the interior of the stream, assuming a uniform background magnetic field, a clumpy infalling gas, and an acoustic energy flux flowing at the base of the chromosphere. We study the dynamical evolution and the post-shock structure as a function of the plasma-beta (thermal pressure over magnetic pressure). We find that a strong magnetic field (~hundreds of Gauss) leads to the formation of fibrils in the shocked gas due to the plasma confinement within flux tubes. The corresponding emission is smooth and fully distinguishable from the case of a weak magnetic field (~tenths of Gauss) where the hot slab demonstrates chaotic motion and oscillates periodically.

  7. 3D Printing Meets Computational Astrophysics: Deciphering the Structure of Eta Carinae’s Colliding Winds Using 3D Prints of Smoothed Particle Hydrodynamics Simulations

    NASA Astrophysics Data System (ADS)

    Madura, Thomas; Gull, Theodore R.; Clementel, Nicola; Paardekooper, Jan-Pieter; Kruip, Chael; Corcoran, Michael F.; Hamaguchi, Kenji; Teodoro, Mairan

    2015-01-01

    We present the first 3D prints of output from a supercomputer simulation of a complex astrophysical system, the colliding stellar winds in the massive (>120 MSun), highly eccentric (e ~ 0.9) binary Eta Carinae. Using a consumer-grade 3D printer (Makerbot Replicator 2X), we successfully printed 3D smoothed particle hydrodynamics simulations of Eta Carinae's inner (r ~110 AU) wind-wind collision interface at multiple orbital phases. These 3D prints reveal important, previously unknown 'finger-like' structures at orbital phases shortly after periastron (φ ~1.045) that protrude radially outward from the spiral wind-wind collision region. We speculate that these fingers are related to instabilities (e.g. Rayleigh-Taylor) that arise at the interface between the radiatively-cooled layer of dense post-shock primary-star wind and the hot, adiabatic post-shock companion-star wind. The success of our work and easy identification of previously unknown physical features highlight the important role 3D printing can play in the visualization and understanding of complex 3D time-dependent numerical simulations of astrophysical phenomena.

  8. Low-cost structured-light based 3D capture system design

    NASA Astrophysics Data System (ADS)

    Dong, Jing; Bengtson, Kurt R.; Robinson, Barrett F.; Allebach, Jan P.

    2014-03-01

    Most of the 3D capture products currently in the market are high-end and pricey. They are not targeted for consumers, but rather for research, medical, or industrial usage. Very few aim to provide a solution for home and small business applications. Our goal is to fill in this gap by only using low-cost components to build a 3D capture system that can satisfy the needs of this market segment. In this paper, we present a low-cost 3D capture system based on the structured-light method. The system is built around the HP TopShot LaserJet Pro M275. For our capture device, we use the 8.0 Mpixel camera that is part of the M275. We augment this hardware with two 3M MPro 150 VGA (640 × 480) pocket projectors. We also describe an analytical approach to predicting the achievable resolution of the reconstructed 3D object based on differentials and small signal theory, and an experimental procedure for validating that the system under test meets the specifications for reconstructed object resolution that are predicted by our analytical model. By comparing our experimental measurements from the camera-projector system with the simulation results based on the model for this system, we conclude that our prototype system has been correctly configured and calibrated. We also conclude that with the analytical models, we have an effective means for specifying system parameters to achieve a given target resolution for the reconstructed object.

  9. 3D geometric modeling and simulation of laser propagation through turbulence with plenoptic functions

    NASA Astrophysics Data System (ADS)

    Wu, Chensheng; Nelson, William; Davis, Christopher C.

    2014-10-01

    Plenoptic functions are functions that preserve all the necessary light field information of optical events. Theoretical work has demonstrated that geometric based plenoptic functions can serve equally well in the traditional wave propagation equation known as the "scalar stochastic Helmholtz equation". However, in addressing problems of 3D turbulence simulation, the dominant methods using phase screen models have limitations both in explaining the choice of parameters (on the transverse plane) in real-world measurements, and finding proper correlations between neighboring phase screens (the Markov assumption breaks down). Though possible corrections to phase screen models are still promising, the equivalent geometric approach based on plenoptic functions begins to show some advantages. In fact, in these geometric approaches, a continuous wave problem is reduced to discrete trajectories of rays. This allows for convenience in parallel computing and guarantees conservation of energy. Besides the pairwise independence of simulated rays, the assigned refractive index grids can be directly tested by temperature measurements with tiny thermoprobes combined with other parameters such as humidity level and wind speed. Furthermore, without loss of generality one can break the causal chain in phase screen models by defining regional refractive centers to allow rays that are less affected to propagate through directly. As a result, our work shows that the 3D geometric approach serves as an efficient and accurate method in assessing relevant turbulence problems with inputs of several environmental measurements and reasonable guesses (such as Cn 2 levels). This approach will facilitate analysis and possible corrections in lateral wave propagation problems, such as image de-blurring, prediction of laser propagation over long ranges, and improvement of free space optic communication systems. In this paper, the plenoptic function model and relevant parallel algorithm computing

  10. Realistic 3D Terrain Roaming and Real-Time Flight Simulation

    NASA Astrophysics Data System (ADS)

    Que, Xiang; Liu, Gang; He, Zhenwen; Qi, Guang

    2014-12-01

    This paper presents an integrate method, which can provide access to current status and the dynamic visible scanning topography, to enhance the interactive during the terrain roaming and real-time flight simulation. A digital elevation model and digital ortho-photo map data integrated algorithm is proposed as the base algorithm for our approach to build a realistic 3D terrain scene. A new technique with help of render to texture and head of display for generating the navigation pane is used. In the flight simulating, in order to eliminate flying "jump", we employs the multidimensional linear interpolation method to adjust the camera parameters dynamically and steadily. Meanwhile, based on the principle of scanning laser imaging, we draw pseudo color figures by scanning topography in different directions according to the real-time flying status. Simulation results demonstrate that the proposed algorithm is prospective for applications and the method can improve the effect and enhance dynamic interaction during the real-time flight.

  11. 3-D simulation of gases transport under condition of inert gas injection into goaf

    NASA Astrophysics Data System (ADS)

    Liu, Mao-Xi; Shi, Guo-Qing; Guo, Zhixiong; Wang, Yan-Ming; Ma, Li-Yang

    2016-02-01

    To prevent coal spontaneous combustion in mines, it is paramount to understand O2 gas distribution under condition of inert gas injection into goaf. In this study, the goaf was modeled as a 3-D porous medium based on stress distribution. The variation of O2 distribution influenced by CO2 or N2 injection was simulated based on the multi-component gases transport and the Navier-Stokes equations using Fluent. The numerical results without inert gas injection were compared with field measurements to validate the simulation model. Simulations with inert gas injection show that CO2 gas mainly accumulates at the goaf floor level; however, a notable portion of N2 gas moves upward. The evolution of the spontaneous combustion risky zone with continuous inert gas injection can be classified into three phases: slow inerting phase, rapid accelerating inerting phase, and stable inerting phase. The asphyxia zone with CO2 injection is about 1.25-2.4 times larger than that with N2 injection. The efficacy of preventing and putting out mine fires is strongly related with the inert gas injecting position. Ideal injections are located in the oxidation zone or the transitional zone between oxidation zone and heat dissipation zone.

  12. Nodes Localization in 3D Wireless Sensor Networks Based on Multidimensional Scaling Algorithm

    PubMed Central

    2014-01-01

    In the recent years, there has been a huge advancement in wireless sensor computing technology. Today, wireless sensor network (WSN) has become a key technology for different types of smart environment. Nodes localization in WSN has arisen as a very challenging problem in the research community. Most of the applications for WSN are not useful without a priory known nodes positions. Adding GPS receivers to each node is an expensive solution and inapplicable for indoor environments. In this paper, we implemented and evaluated an algorithm based on multidimensional scaling (MDS) technique for three-dimensional (3D) nodes localization in WSN using improved heuristic method for distance calculation. Using extensive simulations we investigated our approach regarding various network parameters. We compared the results from the simulations with other approaches for 3D-WSN localization and showed that our approach outperforms other techniques in terms of accuracy.

  13. Precipitation Processes Developed During ARM (1997), TOGA COARE (1992) GATE (1974), SCSMEX (1998), and KWAJEX (1999): Consistent 3D, Semi-3D and 3D Cloud Resolving Model Simulations

    NASA Technical Reports Server (NTRS)

    Tao, W.-K.; Hou, A.; Atlas, R.; Starr, D.; Sud, Y.

    2003-01-01

    Real clouds and cloud systems are inherently three-dimensional (3D). Because of the limitations in computer resources, however, most cloud-resolving models (CRMs) today are still two-dimensional (2D) have been used to study the response of clouds to large-scale forcing. IN these 3D simulators, the model domain was small, and the integration time was 6 hours. Only recently have 3D experiments been performed for multi-day periods for tropical clouds systems with large horizontal domains at the National Center of Atmospheric Research (NCAR) and at NASA Goddard Space Center. At Goddard, a 3D cumulus Ensemble (GCE) model was used to simulate periods during TOGA COARE, GATE, SCSMEX, ARM, and KWAJEX using a 512 by 512 km domain (with 2-km resolution). The result indicate that surface precipitation and latent heating profiles are very similar between the 2D and 3D GCE model simulation. The major objective of this paper are: (1) to assess the performance of the super-parametrization technique, (2) calculate and examine the surface energy (especially radiation) and water budget, and (3) identify the differences and similarities in the organization and entrainment rates of convection between simulated 2D and 3D cloud systems.

  14. Insights into Plasma Etch Profile Evolution with 3D Profile Simulation

    NASA Astrophysics Data System (ADS)

    Sriraman, Saravanapriyan; Paterson, Alex; Zhang, Yiting; Kushner, Mark

    2014-10-01

    Plasma etching is critical for pattern transfer in microelectronics fabrication. For planar devices, efforts in 2D etch profile simulations were sufficient to understand critical etch process mechanisms. In contrast, to understand the complex mechanisms in etching 3D structures of current technology nodes such as FinFETs, 2D profile simulators are inadequate. In this paper, we report on development of a 3D profile simulation platform, the Monte Carlo Feature Profile Model (MCFPM-3D). The MCFPM-3D builds upon the 2D MCFPM platform that includes aspects such as mixing, implantation, and photon assisted processes and addresses reaction mechanisms in surface etching, sputtering, and deposition to predict profile evolution. Model inputs include fluxes of species from plasma derived from the Hybrid Plasma Equipment Model (HPEM). Test cases of Si/SiO2 etching in Ar/Cl2 and Ar/CF4/O2 plasmas for representative 2D/3D feature topographies are considered and phenomena such as selectivity and aspect ratio dependent etching will be discussed.

  15. 2D-3D hybrid stabilized finite element method for tsunami runup simulations

    NASA Astrophysics Data System (ADS)

    Takase, S.; Moriguchi, S.; Terada, K.; Kato, J.; Kyoya, T.; Kashiyama, K.; Kotani, T.

    2016-09-01

    This paper presents a two-dimensional (2D)-three-dimensional (3D) hybrid stabilized finite element method that enables us to predict a propagation process of tsunami generated in a hypocentral region, which ranges from offshore propagation to runup to urban areas, with high accuracy and relatively low computational costs. To be more specific, the 2D shallow water equation is employed to simulate the propagation of offshore waves, while the 3D Navier-Stokes equation is employed for the runup in urban areas. The stabilized finite element method is utilized for numerical simulations for both of the 2D and 3D domains that are independently discretized with unstructured meshes. The multi-point constraint and transmission methods are applied to satisfy the continuity of flow velocities and pressures at the interface between the resulting 2D and 3D meshes, since neither their spatial dimensions nor node arrangements are consistent. Numerical examples are presented to demonstrate the performance of the proposed hybrid method to simulate tsunami behavior, including offshore propagation and runup to urban areas, with substantially lower computation costs in comparison with full 3D computations.

  16. 2D-3D hybrid stabilized finite element method for tsunami runup simulations

    NASA Astrophysics Data System (ADS)

    Takase, S.; Moriguchi, S.; Terada, K.; Kato, J.; Kyoya, T.; Kashiyama, K.; Kotani, T.

    2016-05-01

    This paper presents a two-dimensional (2D)-three-dimensional (3D) hybrid stabilized finite element method that enables us to predict a propagation process of tsunami generated in a hypocentral region, which ranges from offshore propagation to runup to urban areas, with high accuracy and relatively low computational costs. To be more specific, the 2D shallow water equation is employed to simulate the propagation of offshore waves, while the 3D Navier-Stokes equation is employed for the runup in urban areas. The stabilized finite element method is utilized for numerical simulations for both of the 2D and 3D domains that are independently discretized with unstructured meshes. The multi-point constraint and transmission methods are applied to satisfy the continuity of flow velocities and pressures at the interface between the resulting 2D and 3D meshes, since neither their spatial dimensions nor node arrangements are consistent. Numerical examples are presented to demonstrate the performance of the proposed hybrid method to simulate tsunami behavior, including offshore propagation and runup to urban areas, with substantially lower computation costs in comparison with full 3D computations.

  17. Validation of 3-D Ice Accretion Measurement Methodology for Experimental Aerodynamic Simulation

    NASA Technical Reports Server (NTRS)

    Broeren, Andy P.; Addy, Harold E., Jr.; Lee, Sam; Monastero, Marianne C.

    2015-01-01

    Determining the adverse aerodynamic effects due to ice accretion often relies on dry-air wind-tunnel testing of artificial, or simulated, ice shapes. Recent developments in ice-accretion documentation methods have yielded a laser-scanning capability that can measure highly three-dimensional (3-D) features of ice accreted in icing wind tunnels. The objective of this paper was to evaluate the aerodynamic accuracy of ice-accretion simulations generated from laser-scan data. Ice-accretion tests were conducted in the NASA Icing Research Tunnel using an 18-in. chord, two-dimensional (2-D) straight wing with NACA 23012 airfoil section. For six ice-accretion cases, a 3-D laser scan was performed to document the ice geometry prior to the molding process. Aerodynamic performance testing was conducted at the University of Illinois low-speed wind tunnel at a Reynolds number of 1.8 × 10(exp 6) and a Mach number of 0.18 with an 18-in. chord NACA 23012 airfoil model that was designed to accommodate the artificial ice shapes. The ice-accretion molds were used to fabricate one set of artificial ice shapes from polyurethane castings. The laser-scan data were used to fabricate another set of artificial ice shapes using rapid prototype manufacturing such as stereolithography. The iced-airfoil results with both sets of artificial ice shapes were compared to evaluate the aerodynamic simulation accuracy of the laser-scan data. For five of the six ice-accretion cases, there was excellent agreement in the iced-airfoil aerodynamic performance between the casting and laser-scan based simulations. For example, typical differences in iced-airfoil maximum lift coefficient were less than 3 percent with corresponding differences in stall angle of approximately 1 deg or less. The aerodynamic simulation accuracy reported in this paper has demonstrated the combined accuracy of the laser-scan and rapid-prototype manufacturing approach to simulating ice accretion for a NACA 23012 airfoil. For several

  18. Tropospheric vertical column densities of NO2 over managed dryland ecosystems (Xinjiang, China): MAX-DOAS measurements vs. 3-D dispersion model simulations based on laboratory derived NO emission from soil samples

    NASA Astrophysics Data System (ADS)

    Mamtimin, B.; Behrendt, T.; Badawy, M. M.; Wagner, T.; Qi, Y.; Wu, Z.; Meixner, F. X.

    2014-07-01

    We report on MAX-DOAS observations of NO2 over an oasis-ecotone-desert ecosystem in NW-China. There, local ambient NO2 concentrations originate from enhanced biogenic NO emission of intensively managed soils. Our target oasis "Milan" is located at the southern edge of the Taklimakan desert, very remote and well isolated from other potential anthropogenic and biogenic NOx sources. Four observation sites for MAX-DOAS measurements were selected, at the oasis center, downwind and upwind of the oasis, and in the desert. Biogenic NO emissions in terms of (i) soil moisture and (ii) soil temperature of Milan oasis' (iii) different land-cover type sub-units (cotton, Jujube trees, cotton/Jujube mixture, desert) were quantified by laboratory incubation of corresponding soil samples. Net potential NO fluxes were up-scaled to oasis scale by areal distribution and classification of land-cover types derived from satellite images using GIS techniques. A Lagrangian dispersion model (LASAT, Lagrangian Simulation of Aerosol-Transport) was used to calculate the dispersion of soil emitted NO into the atmospheric boundary layer over Milan oasis. Three dimensional NO concentrations (30 m horizontal resolution) have been converted to 3-D NO2 concentrations, assuming photostationary state conditions. NO2 column densities were simulated by suitable vertical integration of modeled 3-D NO2 concentrations at those downwind and upwind locations, where the MAX-DOAS measurements were performed. Downwind-upwind differences (a direct measure of Milan oasis' contribution to the areal increase of ambient NO2 concentration) of measured and simulated slant (as well as vertical) NO2 column densities show excellent agreement. This agreement is considered as the first successful attempt to prove the validity of the chosen approach to up-scale laboratory derived biogenic NO fluxes to ecosystem field conditions, i.e. from the spatial scale of a soil sample (cm2) to the size of an entire agricultural

  19. 3-D FDTD simulation of shear waves for evaluation of complex modulus imaging.

    PubMed

    Orescanin, Marko; Wang, Yue; Insana, Michael

    2011-02-01

    The Navier equation describing shear wave propagation in 3-D viscoelastic media is solved numerically with a finite differences time domain (FDTD) method. Solutions are formed in terms of transverse scatterer velocity waves and then verified via comparison to measured wave fields in heterogeneous hydrogel phantoms. The numerical algorithm is used as a tool to study the effects on complex shear modulus estimation from wave propagation in heterogeneous viscoelastic media. We used an algebraic Helmholtz inversion (AHI) technique to solve for the complex shear modulus from simulated and experimental velocity data acquired in 2-D and 3-D. Although 3-D velocity estimates are required in general, there are object geometries for which 2-D inversions provide accurate estimations of the material properties. Through simulations and experiments, we explored artifacts generated in elastic and dynamic-viscous shear modulus images related to the shear wavelength and average viscosity. PMID:21342824

  20. 3D simulations of fluctuation spectra in the hall-MHD plasma.

    PubMed

    Shaikh, Dastgeer; Shukla, P K

    2009-01-30

    Turbulent spectral cascades are investigated by means of fully three-dimensional (3D) simulations of a compressible Hall-magnetohydrodynamic (H-MHD) plasma in order to understand the observed spectral break in the solar wind turbulence spectra in the regime where the characteristic length scales associated with electromagnetic fluctuations are smaller than the ion gyroradius. In this regime, the results of our 3D simulations exhibit that turbulent spectral cascades in the presence of a mean magnetic field follow an omnidirectional anisotropic inertial-range spectrum close to k(-7/3). The latter is associated with the Hall current arising from nonequal electron and ion fluid velocities in our 3D H-MHD plasma model. PMID:19257431

  1. 3D numerical simulation analysis of passive drag near free surface in swimming

    NASA Astrophysics Data System (ADS)

    Zhan, Jie-min; Li, Tian-zeng; Chen, Xue-bin; Li, Yok-sheung; Wai, Wing-hong Onyx

    2015-04-01

    The aim of this work is to build a 3D numerical model to study the characteristics of passive drag on competitive swimmers taking into account the impact of the free surface. This model solves the 3D incompressible Navier-Stokes equations using RNG k- ɛ turbulence closure. The volume of fluid (VOF) method is used to locate the free surface. The 3D virtual model is created by Computer Aided Industrial Design (CAID) software, Rhinoceros. Firstly, a specific posture of swimming is studied. The simulation results are in good agreement with the data from mannequin towing experiments. The effects of a swimmer's arms and legs positions on swimming performance are then studied. Finally, it is demonstrated that the present method is capable of simulating gliding near the free surface.

  2. 3D visualization of ultra-fine ICON climate simulation data

    NASA Astrophysics Data System (ADS)

    Röber, Niklas; Spickermann, Dela; Böttinger, Michael

    2016-04-01

    Advances in high performance computing and model development allow the simulation of finer and more detailed climate experiments. The new ICON model is based on an unstructured triangular grid and can be used for a wide range of applications, ranging from global coupled climate simulations down to very detailed and high resolution regional experiments. It consists of an atmospheric and an oceanic component and scales very well for high numbers of cores. This allows us to conduct very detailed climate experiments with ultra-fine resolutions. ICON is jointly developed in partnership with DKRZ by the Max Planck Institute for Meteorology and the German Weather Service. This presentation discusses our current workflow for analyzing and visualizing this high resolution data. The ICON model has been used for eddy resolving (<10km) ocean simulations, as well as for ultra-fine cloud resolving (120m) atmospheric simulations. This results in very large 3D time dependent multi-variate data that need to be displayed and analyzed. We have developed specific plugins for the free available visualization software ParaView and Vapor, which allows us to read and handle that much data. Within ParaView, we can additionally compare prognostic variables with performance data side by side to investigate the performance and scalability of the model. With the simulation running in parallel on several hundred nodes, an equal load balance is imperative. In our presentation we show visualizations of high-resolution ICON oceanographic and HDCP2 atmospheric simulations that were created using ParaView and Vapor. Furthermore we discuss our current efforts to improve our visualization capabilities, thereby exploring the potential of regular in-situ visualization, as well as of in-situ compression / post visualization.

  3. 3D simulation of seismic wave propagation around a tunnel using the spectral element method

    NASA Astrophysics Data System (ADS)

    Lambrecht, L.; Friederich, W.

    2010-05-01

    We model seismic wave propagation in the environment of a tunnel for later application to reconnaissance. Elastic wave propagation can be simulated by different numerical techniques such as finite differences and pseudospectral methods. Their disadvantage is the lack of accuracy on free surfaces, numerical dispersion and inflexibility of the mesh. Here we use the software package SPECFEM3D_SESAME in an svn development version, which is based on the spectral element method (SEM) and can handle complex mesh geometries. A weak form of the elastic wave equation leads to a linear system of equations with a diagonal mass matrix, where the free surface boundary of the tunnel can be treated under realistic conditions and can be effectively implemented in parallel. We have designed a 3D external mesh including a tunnel and realistic features such as layers and holes to simulate elastic wave propagation in the zone around the tunnel. The source is acting at the tunnel surface so that we excite Rayleigh waves which propagate to the front face of the tunnel. A conversion takes place and a high amplitude S-wave is radiated in the direction of the tunnel axis. Reflections from perturbations in front of the tunnel can be measured by receivers implemented on the tunnel face. For a shallow tunnel the land surface has high influence on the wave propagation. By implementing additional receivers at this surface we intent to improve the prediction. It shows that the SEM is very capable to handle the complex geometry of the model and especially incorporates the free surfaces of the model.

  4. Calibration Methods for a 3D Triangulation Based Camera

    NASA Astrophysics Data System (ADS)

    Schulz, Ulrike; Böhnke, Kay

    A sensor in a camera takes a gray level image (1536 x 512 pixels), which is reflected by a reference body. The reference body is illuminated by a linear laser line. This gray level image can be used for a 3D calibration. The following paper describes how a calibration program calculates the calibration factors. The calibration factors serve to determine the size of an unknown reference body.

  5. Fast simulation of solid tumors thermal ablation treatments with a 3D reaction diffusion model.

    PubMed

    Bertaccini, Daniele; Calvetti, Daniela

    2007-08-01

    An efficient computational method for near real-time simulation of thermal ablation of tumors via radio frequencies is proposed. Model simulations of the temperature field in a 3D portion of tissue containing the tumoral mass for different patterns of source heating can be used to design the ablation procedure. The availability of a very efficient computational scheme makes it possible to update the predicted outcome of the procedure in real time. In the algorithms proposed here a discretization in space of the governing equations is followed by an adaptive time integration based on implicit multistep formulas. A modification of the ode15s MATLAB function which uses Krylov space iterative methods for the solution of the linear systems arising at each integration step makes it possible to perform the simulations on standard desktop for much finer grids than using the built-in ode15s. The proposed algorithm can be applied to a wide class of nonlinear parabolic differential equations. PMID:17173888

  6. FAST SIMULATION OF SOLID TUMORS THERMAL ABLATION TREATMENTS WITH A 3D REACTION DIFFUSION MODEL *

    PubMed Central

    BERTACCINI, DANIELE; CALVETTI, DANIELA

    2007-01-01

    An efficient computational method for near real-time simulation of thermal ablation of tumors via radio frequencies is proposed. Model simulations of the temperature field in a 3D portion of tissue containing the tumoral mass for different patterns of source heating can be used to design the ablation procedure. The availability of a very efficient computational scheme makes it possible update the predicted outcome of the procedure in real time. In the algorithms proposed here a discretization in space of the governing equations is followed by an adaptive time integration based on implicit multistep formulas. A modification of the ode15s MATLAB function which uses Krylov space iterative methods for the solution of for the linear systems arising at each integration step makes it possible to perform the simulations on standard desktop for much finer grids than using the built-in ode15s. The proposed algorithm can be applied to a wide class of nonlinear parabolic differential equations. PMID:17173888

  7. Simulation and Realization of a Focus Shifting Unit using a Tunable Lens for 3D Laser Material Processing

    NASA Astrophysics Data System (ADS)

    Eberle, G.; Chiron, V.; Wegener, K.

    3D laser microprocessing using current market available technologies reveals itself to be a cost intensive and complex undertaking which is mostly due to the control architecture and use of moving components. Recent market appearance of electronically tunable lenses exhibiting NIR transmission, large aperture, high damage threshold and fast response times are available for laser based applications. Hence, enabling usage in the field of laser microprocessing. This paper thus introduces the functional principle of electrically tunable lenses, setup arrangement for 3D laser microprocessing, computational simulation of system parameters and comparison with experimental results.

  8. 3D Direct Simulation Monte Carlo Code Which Solves for Geometrics

    1998-01-13

    Pegasus is a 3D Direct Simulation Monte Carlo Code which solves for geometries which can be represented by bodies of revolution. Included are all the surface chemistry enhancements in the 2D code Icarus as well as a real vacuum pump model. The code includes multiple species transport.

  9. Online Stereo 3D Simulation in Studying the Spherical Pendulum in Conservative Force Field

    ERIC Educational Resources Information Center

    Zabunov, Svetoslav S.

    2013-01-01

    The current paper aims at presenting a modern e-learning method and tool that is utilized in teaching physics in the universities. An online stereo 3D simulation is used for e-learning mechanics and specifically the teaching of spherical pendulum as part of the General Physics course for students in the universities. This approach was realized on…

  10. PEGASUS. 3D Direct Simulation Monte Carlo Code Which Solves for Geometrics

    SciTech Connect

    Bartel, T.J.

    1998-12-01

    Pegasus is a 3D Direct Simulation Monte Carlo Code which solves for geometries which can be represented by bodies of revolution. Included are all the surface chemistry enhancements in the 2D code Icarus as well as a real vacuum pump model. The code includes multiple species transport.

  11. Real-Time Climate Simulations in the Interactive 3D Game Universe Sandbox ²

    NASA Astrophysics Data System (ADS)

    Goldenson, N. L.

    2014-12-01

    Exploration in an open-ended computer game is an engaging way to explore climate and climate change. Everyone can explore physical models with real-time visualization in the educational simulator Universe Sandbox ² (universesandbox.com/2), which includes basic climate simulations on planets. I have implemented a time-dependent, one-dimensional meridional heat transport energy balance model to run and be adjustable in real time in the midst of a larger simulated system. Universe Sandbox ² is based on the original game - at its core a gravity simulator - with other new physically-based content for stellar evolution, and handling collisions between bodies. Existing users are mostly science enthusiasts in informal settings. We believe that this is the first climate simulation to be implemented in a professionally developed computer game with modern 3D graphical output in real time. The type of simple climate model we've adopted helps us depict the seasonal cycle and the more drastic changes that come from changing the orbit or other external forcings. Users can alter the climate as the simulation is running by altering the star(s) in the simulation, dragging to change orbits and obliquity, adjusting the climate simulation parameters directly or changing other properties like CO2 concentration that affect the model parameters in representative ways. Ongoing visuals of the expansion and contraction of sea ice and snow-cover respond to the temperature calculations, and make it accessible to explore a variety of scenarios and intuitive to understand the output. Variables like temperature can also be graphed in real time. We balance computational constraints with the ability to capture the physical phenomena we wish to visualize, giving everyone access to a simple open-ended meridional energy balance climate simulation to explore and experiment with. The software lends itself to labs at a variety of levels about climate concepts including seasons, the Greenhouse effect

  12. 3D Radiative Transfer in Eta Carinae: Application of the SimpleX Algorithm to 3D SPH Simulations of Binary Colliding Winds

    NASA Technical Reports Server (NTRS)

    Clementel, N.; Madura, T. I.; Kruip, C. J. H.; Icke, V.; Gull, T. R.

    2014-01-01

    Eta Carinae is an ideal astrophysical laboratory for studying massive binary interactions and evolution, and stellar wind-wind collisions. Recent three-dimensional (3D) simulations set the stage for understanding the highly complex 3D flows in Eta Car. Observations of different broad high- and low-ionization forbidden emission lines provide an excellent tool to constrain the orientation of the system, the primary's mass-loss rate, and the ionizing flux of the hot secondary. In this work we present the first steps towards generating synthetic observations to compare with available and future HST/STIS data. We present initial results from full 3D radiative transfer simulations of the interacting winds in Eta Car. We use the SimpleX algorithm to post-process the output from 3D SPH simulations and obtain the ionization fractions of hydrogen and helium assuming three different mass-loss rates for the primary star. The resultant ionization maps of both species constrain the regions where the observed forbidden emission lines can form. Including collisional ionization is necessary to achieve a better description of the ionization states, especially in the areas shielded from the secondary's radiation. We find that reducing the primary's mass-loss rate increases the volume of ionized gas, creating larger areas where the forbidden emission lines can form. We conclude that post processing 3D SPH data with SimpleX is a viable tool to create ionization maps for Eta Car.

  13. 3D Radiative Transfer in Eta Carinae: Application of the SimpleX Algorithm to 3D SPH Simulations of Binary Colliding Winds

    NASA Technical Reports Server (NTRS)

    Clementel, N.; Madura, T. I.; Kruip, C.J.H.; Icke, V.; Gull, T. R.

    2014-01-01

    Eta Carinae is an ideal astrophysical laboratory for studying massive binary interactions and evolution, and stellar wind-wind collisions. Recent three-dimensional (3D) simulations set the stage for understanding the highly complex 3D flows in eta Car. Observations of different broad high- and low-ionization forbidden emission lines provide an excellent tool to constrain the orientation of the system, the primary's mass-loss rate, and the ionizing flux of the hot secondary. In this work we present the first steps towards generating synthetic observations to compare with available and future HST/STIS data. We present initial results from full 3D radiative transfer simulations of the interacting winds in eta Car.We use the SimpleX algorithm to post-process the output from 3D SPH simulations and obtain the ionization fractions of hydrogen and helium assuming three different mass-loss rates for the primary star. The resultant ionization maps of both species constrain the regions where the observed forbidden emission lines can form. Including collisional ionization is necessary to achieve a better description of the ionization states, especially in the areas shielded from the secondary's radiation. We find that reducing the primary's mass-loss rate increases the volume of ionized gas, creating larger areas where the forbidden emission lines can form.We conclude that post processing 3D SPH data with SimpleX is a viable tool to create ionization maps for eta Car.

  14. Assessing soil water storage distribution under sprinkler irrigation by coupling 3D simulations and field observations

    NASA Astrophysics Data System (ADS)

    Taha, Uday; Shabeeb, Ahmed; dragonetti, giovanna; Lamaddalena, Nicola; Coppola, Antonio

    2016-04-01

    This work analyzed the variability of sprinkler irrigation application over a bare soil, both in terms of water application efficiency and uniformity, by integrating and comparing the information on the irrigation depth data (ID), as measured by catch cans, soil water storage in the upper root zone, as measured by TDR probes, and a 3D simulations of water flow in soils. Three irrigation tests were performed at three different pressures (2, 3 and 4 bar). A lateral water redistribution was observed and simulated after each irrigation event by comparing spatial distributions of site-specific water application efficiency (AEs), as well as ratios of site-specific actual water storage increase (SWEs) and irrigation depth (IDs) to the water content before irrigation. Because of soil water redistribution processes, distribution uniformity based on soil storages was systematically higher than the catch can uniformity. The obvious consequence of lateral water redistribution processes was that the soil smoothing action on non-uniformity observed at the surface increased both with depth and over time. At a given depth the uniformity of soil water storages always attained the same value, whatever the pressure considered and the catch can-based uniformity coefficient. It was concluded that, for the case of random distribution of ID, the uniformity of water storages is driven by the soil behavior rather than by the irrigation system.

  15. Comparison of two different surfaces for 3d model abstraction in support of remote sensing simulations

    SciTech Connect

    Pope, Paul A; Ranken, Doug M

    2010-01-01

    A method for abstracting a 3D model by shrinking a triangular mesh, defined upon a best fitting ellipsoid surrounding the model, onto the model's surface has been previously described. This ''shrinkwrap'' process enables a semi-regular mesh to be defined upon an object's surface. This creates a useful data structure for conducting remote sensing simulations and image processing. However, using a best fitting ellipsoid having a graticule-based tessellation to seed the shrinkwrap process suffers from a mesh which is too dense at the poles. To achieve a more regular mesh, the use of a best fitting, subdivided icosahedron was tested. By subdividing each of the twenty facets of the icosahedron into regular triangles of a predetermined size, arbitrarily dense, highly-regular starting meshes can be created. Comparisons of the meshes resulting from these two seed surfaces are described. Use of a best fitting icosahedron-based mesh as the seed surface in the shrinkwrap process is preferable to using a best fitting ellipsoid. The impacts to remote sensing simulations, specifically generation of synthetic imagery, is illustrated.

  16. The Vajont disaster: a 3D numerical simulation for the slide and the waves

    NASA Astrophysics Data System (ADS)

    Rubino, Angelo; Androsov, Alexey; Vacondio, Renato; Zanchettin, Davide; Voltzinger, Naum

    2016-04-01

    A very high resolution O(5 m), 3D hydrostatic nonlinear numerical model was used to simulate the dynamics of both the slide and the surface waves produced during the Vajont disaster (north Italy, 1963), one of the major landslide-induced tsunamis ever documented. Different simulated wave phenomena like, e.g., maximum run-up on the opposite shore, maximum height, and water velocity were analyzed and compared with data available in literature, including the results of a fully 3D simulation obtained with a Smoothed Particle Hydrodynamic code. The difference between measured and simulated after-slide bathymetries was calculated and used in an attempt to quantify the relative magnitude and extension of rigid and fluid motion components during the event.

  17. Ultra-fast hybrid CPU-GPU multiple scatter simulation for 3-D PET.

    PubMed

    Kim, Kyung Sang; Son, Young Don; Cho, Zang Hee; Ra, Jong Beom; Ye, Jong Chul

    2014-01-01

    Scatter correction is very important in 3-D PET reconstruction due to a large scatter contribution in measurements. Currently, one of the most popular methods is the so-called single scatter simulation (SSS), which considers single Compton scattering contributions from many randomly distributed scatter points. The SSS enables a fast calculation of scattering with a relatively high accuracy; however, the accuracy of SSS is dependent on the accuracy of tail fitting to find a correct scaling factor, which is often difficult in low photon count measurements. To overcome this drawback as well as to improve accuracy of scatter estimation by incorporating multiple scattering contribution, we propose a multiple scatter simulation (MSS) based on a simplified Monte Carlo (MC) simulation that considers photon migration and interactions due to photoelectric absorption and Compton scattering. Unlike the SSS, the MSS calculates a scaling factor by comparing simulated prompt data with the measured data in the whole volume, which enables a more robust estimation of a scaling factor. Even though the proposed MSS is based on MC, a significant acceleration of the computational time is possible by using a virtual detector array with a larger pitch by exploiting that the scatter distribution varies slowly in spatial domain. Furthermore, our MSS implementation is nicely fit to a parallel implementation using graphic processor unit (GPU). In particular, we exploit a hybrid CPU-GPU technique using the open multiprocessing and the compute unified device architecture, which results in 128.3 times faster than using a single CPU. Overall, the computational time of MSS is 9.4 s for a high-resolution research tomograph (HRRT) system. The performance of the proposed MSS is validated through actual experiments using an HRRT. PMID:24403412

  18. OB3D, a new set of 3D objects available for research: a web-based study

    PubMed Central

    Buffat, Stéphane; Chastres, Véronique; Bichot, Alain; Rider, Delphine; Benmussa, Frédéric; Lorenceau, Jean

    2014-01-01

    Studying object recognition is central to fundamental and clinical research on cognitive functions but suffers from the limitations of the available sets that cannot always be modified and adapted to meet the specific goals of each study. We here present a new set of 3D scans of real objects available on-line as ASCII files, OB3D. These files are lists of dots, each defined by a triplet of spatial coordinates and their normal that allow simple and highly versatile transformations and adaptations. We performed a web-based experiment to evaluate the minimal number of dots required for the denomination and categorization of these objects, thus providing a reference threshold. We further analyze several other variables derived from this data set, such as the correlations with object complexity. This new stimulus set, which was found to activate the Lower Occipital Complex (LOC) in another study, may be of interest for studies of cognitive functions in healthy participants and patients with cognitive impairments, including visual perception, language, memory, etc. PMID:25339920

  19. GPU accelerated simulations of 3D deterministic particle transport using discrete ordinates method

    NASA Astrophysics Data System (ADS)

    Gong, Chunye; Liu, Jie; Chi, Lihua; Huang, Haowei; Fang, Jingyue; Gong, Zhenghu

    2011-07-01

    Graphics Processing Unit (GPU), originally developed for real-time, high-definition 3D graphics in computer games, now provides great faculty in solving scientific applications. The basis of particle transport simulation is the time-dependent, multi-group, inhomogeneous Boltzmann transport equation. The numerical solution to the Boltzmann equation involves the discrete ordinates ( Sn) method and the procedure of source iteration. In this paper, we present a GPU accelerated simulation of one energy group time-independent deterministic discrete ordinates particle transport in 3D Cartesian geometry (Sweep3D). The performance of the GPU simulations are reported with the simulations of vacuum boundary condition. The discussion of the relative advantages and disadvantages of the GPU implementation, the simulation on multi GPUs, the programming effort and code portability are also reported. The results show that the overall performance speedup of one NVIDIA Tesla M2050 GPU ranges from 2.56 compared with one Intel Xeon X5670 chip to 8.14 compared with one Intel Core Q6600 chip for no flux fixup. The simulation with flux fixup on one M2050 is 1.23 times faster than on one X5670.

  20. GPU accelerated simulations of 3D deterministic particle transport using discrete ordinates method

    SciTech Connect

    Gong Chunye; Liu Jie; Chi Lihua; Huang Haowei; Fang Jingyue; Gong Zhenghu

    2011-07-01

    Graphics Processing Unit (GPU), originally developed for real-time, high-definition 3D graphics in computer games, now provides great faculty in solving scientific applications. The basis of particle transport simulation is the time-dependent, multi-group, inhomogeneous Boltzmann transport equation. The numerical solution to the Boltzmann equation involves the discrete ordinates (S{sub n}) method and the procedure of source iteration. In this paper, we present a GPU accelerated simulation of one energy group time-independent deterministic discrete ordinates particle transport in 3D Cartesian geometry (Sweep3D). The performance of the GPU simulations are reported with the simulations of vacuum boundary condition. The discussion of the relative advantages and disadvantages of the GPU implementation, the simulation on multi GPUs, the programming effort and code portability are also reported. The results show that the overall performance speedup of one NVIDIA Tesla M2050 GPU ranges from 2.56 compared with one Intel Xeon X5670 chip to 8.14 compared with one Intel Core Q6600 chip for no flux fixup. The simulation with flux fixup on one M2050 is 1.23 times faster than on one X5670.

  1. 4DCBCT-based motion modeling and 3D fluoroscopic image generation for lung cancer radiotherapy

    NASA Astrophysics Data System (ADS)

    Dhou, Salam; Hurwitz, Martina; Mishra, Pankaj; Berbeco, Ross; Lewis, John

    2015-03-01

    A method is developed to build patient-specific motion models based on 4DCBCT images taken at treatment time and use them to generate 3D time-varying images (referred to as 3D fluoroscopic images). Motion models are built by applying Principal Component Analysis (PCA) on the displacement vector fields (DVFs) estimated by performing deformable image registration on each phase of 4DCBCT relative to a reference phase. The resulting PCA coefficients are optimized iteratively by comparing 2D projections captured at treatment time with projections estimated using the motion model. The optimized coefficients are used to generate 3D fluoroscopic images. The method is evaluated using anthropomorphic physical and digital phantoms reproducing real patient trajectories. For physical phantom datasets, the average tumor localization error (TLE) and (95th percentile) in two datasets were 0.95 (2.2) mm. For digital phantoms assuming superior image quality of 4DCT and no anatomic or positioning disparities between 4DCT and treatment time, the average TLE and the image intensity error (IIE) in six datasets were smaller using 4DCT-based motion models. When simulating positioning disparities and tumor baseline shifts at treatment time compared to planning 4DCT, the average TLE (95th percentile) and IIE were 4.2 (5.4) mm and 0.15 using 4DCT-based models, while they were 1.2 (2.2) mm and 0.10 using 4DCBCT-based ones, respectively. 4DCBCT-based models were shown to perform better when there are positioning and tumor baseline shift uncertainties at treatment time. Thus, generating 3D fluoroscopic images based on 4DCBCT-based motion models can capture both inter- and intra- fraction anatomical changes during treatment.

  2. IM3D: A parallel Monte Carlo code for efficient simulations of primary radiation displacements and damage in 3D geometry

    PubMed Central

    Li, Yong Gang; Yang, Yang; Short, Michael P.; Ding, Ze Jun; Zeng, Zhi; Li, Ju

    2015-01-01

    SRIM-like codes have limitations in describing general 3D geometries, for modeling radiation displacements and damage in nanostructured materials. A universal, computationally efficient and massively parallel 3D Monte Carlo code, IM3D, has been developed with excellent parallel scaling performance. IM3D is based on fast indexing of scattering integrals and the SRIM stopping power database, and allows the user a choice of Constructive Solid Geometry (CSG) or Finite Element Triangle Mesh (FETM) method for constructing 3D shapes and microstructures. For 2D films and multilayers, IM3D perfectly reproduces SRIM results, and can be ∼102 times faster in serial execution and > 104 times faster using parallel computation. For 3D problems, it provides a fast approach for analyzing the spatial distributions of primary displacements and defect generation under ion irradiation. Herein we also provide a detailed discussion of our open-source collision cascade physics engine, revealing the true meaning and limitations of the “Quick Kinchin-Pease” and “Full Cascades” options. The issues of femtosecond to picosecond timescales in defining displacement versus damage, the limitation of the displacements per atom (DPA) unit in quantifying radiation damage (such as inadequacy in quantifying degree of chemical mixing), are discussed. PMID:26658477

  3. IM3D: A parallel Monte Carlo code for efficient simulations of primary radiation displacements and damage in 3D geometry

    NASA Astrophysics Data System (ADS)

    Li, Yong Gang; Yang, Yang; Short, Michael P.; Ding, Ze Jun; Zeng, Zhi; Li, Ju

    2015-12-01

    SRIM-like codes have limitations in describing general 3D geometries, for modeling radiation displacements and damage in nanostructured materials. A universal, computationally efficient and massively parallel 3D Monte Carlo code, IM3D, has been developed with excellent parallel scaling performance. IM3D is based on fast indexing of scattering integrals and the SRIM stopping power database, and allows the user a choice of Constructive Solid Geometry (CSG) or Finite Element Triangle Mesh (FETM) method for constructing 3D shapes and microstructures. For 2D films and multilayers, IM3D perfectly reproduces SRIM results, and can be ∼102 times faster in serial execution and > 104 times faster using parallel computation. For 3D problems, it provides a fast approach for analyzing the spatial distributions of primary displacements and defect generation under ion irradiation. Herein we also provide a detailed discussion of our open-source collision cascade physics engine, revealing the true meaning and limitations of the “Quick Kinchin-Pease” and “Full Cascades” options. The issues of femtosecond to picosecond timescales in defining displacement versus damage, the limitation of the displacements per atom (DPA) unit in quantifying radiation damage (such as inadequacy in quantifying degree of chemical mixing), are discussed.

  4. Secure 3D watermarking algorithm based on point set projection

    NASA Astrophysics Data System (ADS)

    Liu, Quan; Zhang, Xiaomei

    2007-11-01

    3D digital models greatly facilitate the distribution and storage of information. While its copyright protection problems attract more and more research interests. A novel secure digital watermarking algorithm for 3D models is proposed in this paper. In order to survive most attacks like rotation, cropping, smoothing, adding noise, etc, the projection of the model's point set is chosen as the carrier of the watermark in the presented algorithm, in which contains the copyright information as logos, text, and so on. Then projection of the model's point set onto x, y and z plane are calculated respectively. Before watermark embedding process, the original watermark is scrambled by a key. Each projection is singular value decomposed, and the scrambled watermark is embedded into the SVD(singular value decomposed) domain of the above x, y and z plane respectively. After that we use the watermarked x, y and z plane to recover the vertices of the model and the watermarked model is attained. Only the legal user can remove the watermark from the watermarked models using the private key. Experiments are presented in the paper to show that the proposed algorithm has good performance on various malicious attacks.

  5. 3D nanotube-based composites produced by laser irradiation

    SciTech Connect

    Ageeva, S A; Bobrinetskii, I I; Nevolin, Vladimir K; Podgaetskii, Vitalii M; Selishchev, S V; Simunin, M M; Konov, Vitalii I; Savranskii, V V; Ponomareva, O V

    2009-04-30

    3D nanocomposites have been fabricated through self-assembly under near-IR cw laser irradiation, using four types of multiwalled and single-walled carbon nanotubes produced by chemical vapour deposition, disproportionation on Fe clusters and cathode sputtering in an inert gas. The composites were prepared by laser irradiation of aqueous solutions of bovine serum albumin until the solvent was evaporated off and a homogeneous black material was obtained: modified albumin reinforced with nanotubes. The consistency of the composites ranged from paste-like to glass-like. Atomic force microscopy was used to study the surface morphology of the nanomaterials. The nanocomposites had a 3D quasi-periodic structure formed by almost spherical or toroidal particles 200-500 nm in diameter and 30-40 nm in visible height. Their inner, quasi-periodic structure was occasionally seen through surface microfractures. The density and hardness of the nanocomposites exceed those of microcrystalline albumin powder by 20% and by a factor of 3-5, respectively. (nanostructures)

  6. 3D FEM Simulation of Rolling Load Working on Piercer Plug in Mannesmann Piercing Process

    NASA Astrophysics Data System (ADS)

    Yoshida, Motohisa

    2010-06-01

    This paper presents 3D FEM simulation of piercer plug in Mannesmann piercing process. Target is establishment of a virtual piercing experiment tool to assistant piercer plug development. FEM simulation analysis has been applied to Mannesmann piercing process previously. Aspect of those studies is how to simulate material flow in piercing process, especially focused on how to describe ductile fracture which is known as Mannesmann effect. Thus far, simulation of rolling tools has not been focused. Present piercer plugs, made of special alloys, are damaged severely and quickly in case of piercing higher Cr contented alloys in seamless steel tube production process. Therefore, development of FEM simulation on rolling tools has been demanded in production side. 3D FEM analysis of piercer plug is performed with ALE (Arbitrary Lagrangian—Eulerian) method by using ABAQUS/Explicit 6.9. Simulations are thermo-mechanical, elasto-plastic coupled, and dynamic calculation. Piercer plug and the billet are modeled by solid elements to analyze various factors on stress, strain and temperature. Ductile fracture is not considered in the simulations. Simulation results are correlated sufficiently to experimental results on damage of piercer plugs. Verifying absolute value of simulated factors is hard since there are few empirical methods to measure them. As a conclusion, studied simulations are sufficient as a virtual piercing experiment tool to develop higher performance piercer plugs.

  7. Simulated KWAJEX Convective Systems Using a 2D and 3D Cloud Resolving Model and Their Comparisons with Radar Observations

    NASA Technical Reports Server (NTRS)

    Shie, Chung-Lin; Tao, Wei-Kuo; Simpson, Joanne

    2003-01-01

    The 1999 Kwajalein Atoll field experiment (KWAJEX), one of several major TRMM (Tropical Rainfall Measuring Mission) field experiments, has successfully obtained a wealth of information and observation data on tropical convective systems over the western Central Pacific region. In this paper, clouds and convective systems that developed during three active periods (Aug 7-12, Aug 17-21, and Aug 29-Sep 13) around Kwajalein Atoll site are simulated using both 2D and 3D Goddard Cumulus Ensemble (GCE) models. Based on numerical results, the clouds and cloud systems are generally unorganized and short lived. These features are validated by radar observations that support the model results. Both the 2D and 3D simulated rainfall amounts and their stratiform contribution as well as the heat, water vapor, and moist static energy budgets are examined for the three convective episodes. Rainfall amounts are quantitatively similar between the two simulations, but the stratiform contribution is considerably larger in the 2D simulation. Regardless of dimension, fo all three cases, the large-scale forcing and net condensation are the two major physical processes that account for the evolution of the budgets with surface latent heat flux and net radiation solar and long-wave radiation)being secondary processes. Quantitative budget differences between 2D and 3D as well as between various episodes will be detailed.Morover, simulated radar signatures and Q1/Q2 fields from the three simulations are compared to each other and with radar and sounding observations.

  8. Waveform prediction with travel time model LLNL-G3D assessed by Spectral-Element simulation

    NASA Astrophysics Data System (ADS)

    Morency, C.; Simmons, N. A.; Myers, S. C.; Johannesson, G.; Matzel, E.

    2013-12-01

    Seismic monitoring requires accurate prediction of travel times, amplitudes, and whole waveforms. As a first step towards developing a model that is suited to seismic monitoring, LLNL developed the LLNL-G3D P-wave travel time model (Simmons et al., 2012, JGR) to improve seismic event location accuracy. LLNL-G3D fulfills the need to predict travel times from events occurring anywhere in the globe to stations ranging from local to teleseismic distances. Prediction over this distance range requires explicit inclusion of detailed 3-dimensional structure from Earths surface to the core. An open question is how well a model optimized to fit P-wave travel time data can predict waveforms? We begin to address this question by using the P-wave velocities in LLNL-G3D as a proxy for S-wave velocity and density, then performing waveform simulations via the SPECFEM3D_GLOBE spectral-element code. We assess the ability of LLNL-G3D to predict waveforms and draw comparisons to other 3D models available in SPECFEM3D_GLOBE package and widely used in the scientific community. Although we do not expect the P-wave model to perform as well as waveform based models, we view our effort as a first step towards accurate prediction of time times, amplitudes and full waveforms based on a single model. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  9. Depth-based coding of MVD data for 3D video extension of H.264/AVC

    NASA Astrophysics Data System (ADS)

    Rusanovskyy, Dmytro; Hannuksela, Miska M.; Su, Wenyi

    2013-06-01

    This paper describes a novel approach of using depth information for advanced coding of associated video data in Multiview Video plus Depth (MVD)-based 3D video systems. As a possible implementation of this conception, we describe two coding tools that have been developed for H.264/AVC based 3D Video Codec as response to Moving Picture Experts Group (MPEG) Call for Proposals (CfP). These tools are Depth-based Motion Vector Prediction (DMVP) and Backward View Synthesis Prediction (BVSP). Simulation results conducted under JCT-3V/MPEG 3DV Common Test Conditions show, that proposed in this paper tools reduce bit rate of coded video data by 15% of average delta bit rate reduction, which results in 13% of bit rate savings on total for the MVD data over the state-of-the-art MVC+D coding. Moreover, presented in this paper conception of depth-based coding of video has been further developed by MPEG 3DV and JCT-3V and this work resulted in even higher compression efficiency, bringing about 20% of delta bit rate reduction on total for coded MVD data over the reference MVC+D coding. Considering significant gains, proposed in this paper coding approach can be beneficial for development of new 3D video coding standards. [Figure not available: see fulltext.

  10. The Martian Water Cycle Based on 3-D Modeling

    NASA Technical Reports Server (NTRS)

    Houben, H.; Haberle, R. M.; Joshi, M. M.

    1999-01-01

    Understanding the distribution of Martian water is a major goal of the Mars Surveyor program. However, until the bulk of the data from the nominal missions of TES, PMIRR, GRS, MVACS, and the DS2 probes are available, we are bound to be in a state where much of our knowledge of the seasonal behavior of water is based on theoretical modeling. We therefore summarize the results of this modeling at the present time. The most complete calculations come from a somewhat simplified treatment of the Martian climate system which is capable of simulating many decades of weather. More elaborate meteorological models are now being applied to study of the problem. The results show a high degree of consistency with observations of aspects of the Martian water cycle made by Viking MAWD, a large number of ground-based measurements of atmospheric column water vapor, studies of Martian frosts, and the widespread occurrence of water ice clouds. Additional information is contained in the original extended abstract.

  11. DOMINO: A fast 3D cartesian discrete ordinates solver for reference PWR simulations and SPN validation

    SciTech Connect

    Courau, T.; Moustafa, S.; Plagne, L.; Poncot, A.

    2013-07-01

    As part of its activity, EDF R and D is developing a new nuclear core simulation code named COCAGNE. This code relies on DIABOLO, a Simplified PN (SPN) method to compute the neutron flux inside the core for eigenvalue calculations. In order to assess the accuracy of SPN calculations, we have developed DOMINO, a new 3D Cartesian SN solver. The parallel implementation of DOMINO is very efficient and allows to complete an eigenvalue calculation involving around 300 x 10{sup 9} degrees of freedom within a few hours on a single shared-memory supercomputing node. This computation corresponds to a 26-group S{sub 8} 3D PWR core model used to assess the SPN accuracy. At the pin level, the maximal error for the SP{sub 5} DIABOLO fission production rate is lower than 0.2% compared to the S{sub 8} DOMINO reference for this 3D PWR core model. (authors)

  12. 3D dynamic simulation of crack propagation in extracorporeal shock wave lithotripsy

    NASA Astrophysics Data System (ADS)

    Wijerathne, M. L. L.; Hori, Muneo; Sakaguchi, Hide; Oguni, Kenji

    2010-06-01

    Some experimental observations of Shock Wave Lithotripsy(SWL), which include 3D dynamic crack propagation, are simulated with the aim of reproducing fragmentation of kidney stones with SWL. Extracorporeal shock wave lithotripsy (ESWL) is the fragmentation of kidney stones by focusing an ultrasonic pressure pulse onto the stones. 3D models with fine discretization are used to accurately capture the high amplitude shear shock waves. For solving the resulting large scale dynamic crack propagation problem, PDS-FEM is used; it provides numerically efficient failure treatments. With a distributed memory parallel code of PDS-FEM, experimentally observed 3D photoelastic images of transient stress waves and crack patterns in cylindrical samples are successfully reproduced. The numerical crack patterns are in good agreement with the experimental ones, quantitatively. The results shows that the high amplitude shear waves induced in solid, by the lithotriptor generated shock wave, play a dominant role in stone fragmentation.

  13. The program FANS-3D (finite analytic numerical simulation 3-dimensional) and its applications

    NASA Technical Reports Server (NTRS)

    Bravo, Ramiro H.; Chen, Ching-Jen

    1992-01-01

    In this study, the program named FANS-3D (Finite Analytic Numerical Simulation-3 Dimensional) is presented. FANS-3D was designed to solve problems of incompressible fluid flow and combined modes of heat transfer. It solves problems with conduction and convection modes of heat transfer in laminar flow, with provisions for radiation and turbulent flows. It can solve singular or conjugate modes of heat transfer. It also solves problems in natural convection, using the Boussinesq approximation. FANS-3D was designed to solve heat transfer problems inside one, two and three dimensional geometries that can be represented by orthogonal planes in a Cartesian coordinate system. It can solve internal and external flows using appropriate boundary conditions such as symmetric, periodic and user specified.

  14. Acceleration of 3D Finite Difference AWP-ODC for seismic simulation on GPU Fermi Architecture

    NASA Astrophysics Data System (ADS)

    Zhou, J.; Cui, Y.; Choi, D.

    2011-12-01

    AWP-ODC, a highly scalable parallel finite-difference application, enables petascale 3D earthquake calculations. This application generates realistic dynamic earthquake source description and detailed physics-based anelastic ground motions at frequencies pertinent to safe building design. In 2010, the code achieved M8, a full dynamical simulation of a magnitude-8 earthquake on the southern San Andreas fault up to 2-Hz, the largest-ever earthquake simulation. Building on the success of the previous work, we have implemented CUDA on AWP-ODC to accelerate wave propagation on GPU platform. Our CUDA development aims on aggressive parallel efficiency, optimized global and shared memory access to make the best use of GPU memory hierarchy. The benchmark on NVIDIA Tesla C2050 graphics cards demonstrated many tens of speedup in single precision compared to serial implementation at a testing problem size, while an MPI-CUDA implementation is in the progress to extend our solver to multi-GPU clusters. Our CUDA implementation has been carefully verified for accuracy.

  15. Multigrid direct numerical simulation of the whole process of flow transition in 3-D boundary layers

    NASA Technical Reports Server (NTRS)

    Liu, Chaoqun; Liu, Zhining

    1993-01-01

    A new technology was developed in this study which provides a successful numerical simulation of the whole process of flow transition in 3-D boundary layers, including linear growth, secondary instability, breakdown, and transition at relatively low CPU cost. Most other spatial numerical simulations require high CPU cost and blow up at the stage of flow breakdown. A fourth-order finite difference scheme on stretched and staggered grids, a fully implicit time marching technique, a semi-coarsening multigrid based on the so-called approximate line-box relaxation, and a buffer domain for the outflow boundary conditions were all used for high-order accuracy, good stability, and fast convergence. A new fine-coarse-fine grid mapping technique was developed to keep the code running after the laminar flow breaks down. The computational results are in good agreement with linear stability theory, secondary instability theory, and some experiments. The cost for a typical case with 162 x 34 x 34 grid is around 2 CRAY-YMP CPU hours for 10 T-S periods.

  16. Characterization of an SRF gun: a 3D full wave simulation

    SciTech Connect

    Wang, E.; Ben-Zvi, I.; Wang, J.

    2011-03-28

    We characterized a BNL 1.3GHz half-cell SRF gun is tested for GaAs photocathode. The gun already was simulated several years ago via two-dimensional (2D) numerical codes (i.e., Superfish and Parmela) with and without the beam. In this paper, we discuss our investigation of its characteristics using a three dimensional (3D) full-wave code (CST STUDIO SUITE{trademark}).The input/pickup couplers are sited symmetrically on the same side of the gun at an angle of 180{sup o}. In particular, the inner conductor of the pickup coupler is considerably shorter than that of the input coupler. We evaluated the cross-talk between the beam (trajectory) and the signal on the input coupler compared our findings with published results based on analytical models. The CST STUDIO SUITE{trademark} also was used to predict the field within the cavity; particularly, a combination of transient/eigenmode solvers was employed to accurately construct the RF field for the particles, which also includes the effects of the couplers. Finally, we explored the beam's dynamics with a particle in cell (PIC) simulation, validated the results and compare them with 2D code result.

  17. Study of a 3D DEP-based microfluidic system for selective nanoparticle manipulation

    NASA Astrophysics Data System (ADS)

    Lungu, M.; Balasiu, S.; Bunoiu, M. O.; Neculae, A.

    2014-11-01

    Manipulation of nanoparticle using dielectrophoresis (DEP) is an emerging technique to separate particles solely according to their dielectric properties and size, used in different forms to control the position, their orientation and velocity, to filtrate chemical compounds contained in the gas resulting from combustion processes, etc. This contribution presents the results of a simulation study which aims to characterize the functionality of a 3D DEP-based microsystem for the selective manipulation of nanometric particles. The use of 3D geometry of the device represents an important improvement in the description of the behavior of a nanoparticle suspension subjected to dielectrophoretic forces. The numerical solutions of the electric potential, electric field, DEP force and particle concentration distribution for a typical interdigitated electrodes array are calculated using the COMSOL Multiphysics finite element solver. The presented results demonstrate that dielectrophoresis can be successfully used for the manipulation of nanometric particles and give important information for the optimization of the experimental setup.

  18. Simulation of bootstrap current in 2D and 3D ideal magnetic fields in tokamaks

    NASA Astrophysics Data System (ADS)

    Raghunathan, M.; Graves, J. P.; Cooper, W. A.; Pedro, M.; Sauter, O.

    2016-09-01

    We aim to simulate the bootstrap current for a MAST-like spherical tokamak using two approaches for magnetic equilibria including externally caused 3D effects such as resonant magnetic perturbations (RMPs), the effect of toroidal ripple, and intrinsic 3D effects such as non-resonant internal kink modes. The first approach relies on known neoclassical coefficients in ideal MHD equilibria, using the Sauter (Sauter et al 1999 Phys. Plasmas 6 2834) expression valid for all collisionalities in axisymmetry, and the second approach being the quasi-analytic Shaing–Callen (Shaing and Callen 1983 Phys. Fluids 26 3315) model in the collisionless regime for 3D. Using the ideal free-boundary magnetohydrodynamic code VMEC, we compute the flux-surface averaged bootstrap current density, with the Sauter and Shaing–Callen expressions for 2D and 3D ideal MHD equilibria including an edge pressure barrier with the application of resonant magnetic perturbations, and equilibria possessing a saturated non-resonant 1/1 internal kink mode with a weak internal pressure barrier. We compare the applicability of the self-consistent iterative model on the 3D applications and discuss the limitations and advantages of each bootstrap current model for each type of equilibrium.

  19. Fully Kinetic 3D Simulations of the Interaction of the Solar Wind with Mercury

    NASA Astrophysics Data System (ADS)

    Amaya, J.; Deca, J.; Lembege, B.; Lapenta, G.

    2015-12-01

    The planet Mercury has been studied by the space mission Mariner 10, in the 1970's, and by the MESSENGER mission launched in 2004. Interest in the first planet of the Solar System has now been renewed by the launch in 2017 of the BepiColombo mission. MESSENGER and BepiColombo give access to information about the local conditions of the magnetosphere of Mercury. This data must be evaluated in the context of the global interaction between the solar wind and the planet's magnetosphere. Global scale simulations of the planet's environment are necessary to fully understand the data gathered from in-situ measurements. We use three-dimensional simulations to support the scientific goals of the two missions. In contrast with the results based on MHD (Kabin et al., 2000) and hybrid codes (Kallio et Janhumen, 2003; Travnicek et al., 2007, 2010; Richer et al., 2012), the present work is based on the implicit moment Particle-in-Cell (PiC) method, which allows to use large time and space steps, while granting access to the dynamics of the smaller electron scales in the plasma. The purpose of these preliminary PIC simulations is to retrieve the top-level features of Mercury's magnetosphere and its frontiers. We compare the results obtained with the implicit moment PiC method against 3D hybrid simulations. We perform simulations of the global plasma environment of Mercury using the solar wind conditions measured by MESSENGER. We show that complex flows form around the planet, including the development of Kelvin-Helmoltz instabilities at the flanks. We evaluate the dynamics of the shock, magnetosheath, magnetopause, the reconnection areas, the formation of plasma sheet and magnetotail, and the variation of ion/electron plasma flows when crossing these frontiers. The simulations also give access to detailed information about the particle dynamics and their velocity distribution at locations that can be used for comparison with data from MESSENGER and later on with the forthcoming

  20. Quantification of Ground Motion Reductions by Fault Zone Plasticity with 3D Spontaneous Rupture Simulations

    NASA Astrophysics Data System (ADS)

    Roten, D.; Olsen, K. B.; Cui, Y.; Day, S. M.

    2015-12-01

    We explore the effects of fault zone nonlinearity on peak ground velocities (PGVs) by simulating a suite of surface rupturing earthquakes in a visco-plastic medium. Our simulations, performed with the AWP-ODC 3D finite difference code, cover magnitudes from 6.5 to 8.0, with several realizations of the stochastic stress drop for a given magnitude. We test three different models of rock strength, with friction angles and cohesions based on criteria which are frequently applied to fractured rock masses in civil engineering and mining. We use a minimum shear-wave velocity of 500 m/s and a maximum frequency of 1 Hz. In rupture scenarios with average stress drop (~3.5 MPa), plastic yielding reduces near-fault PGVs by 15 to 30% in pre-fractured, low-strength rock, but less than 1% in massive, high quality rock. These reductions are almost insensitive to the scenario earthquake magnitude. In the case of high stress drop (~7 MPa), however, plasticity reduces near-fault PGVs by 38 to 45% in rocks of low strength and by 5 to 15% in rocks of high strength. Because plasticity reduces slip rates and static slip near the surface, these effects can partially be captured by defining a shallow velocity-strengthening layer. We also perform a dynamic nonlinear simulation of a high stress drop M 7.8 earthquake rupturing the southern San Andreas fault along 250 km from Indio to Lake Hughes. With respect to the viscoelastic solution (a), nonlinearity in the fault damage zone and in near-surface deposits would reduce long-period (> 1 s) peak ground velocities in the Los Angeles basin by 15-50% (b), depending on the strength of crustal rocks and shallow sediments. These simulation results suggest that nonlinear effects may be relevant even at long periods, especially for earthquakes with high stress drop.

  1. Relativistic 3D precessing jet simulations for the X-ray binary SS433

    NASA Astrophysics Data System (ADS)

    Monceau-Baroux, Rémi; Porth, Oliver; Meliani, Zakaria; Keppens, Rony

    2014-01-01

    Context. Modern high-resolution radio observations allow us a closer look into the objects that power relativistic jets. This is especially the case for SS433, an X-ray binary that emits a precessing jet that is observed down to the subparsec scale. Aims: We aim to study full 3D dynamics of relativistic jets associated with active galactic nuclei or X-ray binaries (XRB). In particular, we incorporate the precessing motion of a jet into a model for the jet associated with the XRB SS433. Our study of the jet dynamics in this system focuses on the subparsec scales. We investigate the impact of jet precession and the variation of the Lorentz factor of the injected matter on the general 3D jet dynamics and its energy transfer to the surrounding medium. After visualizing and quantifying jet dynamics, we aim to realize synthetic radio mapping of the data, to compare our results with observations. Methods: For our study we used a block-tree adaptive mesh refinement scheme and an inner time-dependent boundary prescription to inject precessing bipolar supersonic jets. Parameters extracted from observations were used. Different 3D jet realizations that match the kinetic flux of the SS433 jet were intercompared, which vary in density contrast and jet beam velocity. We tracked the energy content deposited in different regions of the domain affected by the jet. Our code allows us to follow the adiabatic cooling of a population of relativistic particles injected by the jet. This evolving energy spectrum of accelerated electrons, using a pressure-based proxy for the magnetic field, allowed us to obtain the radio emission from our simulation. Results: We find a higher energy transfer for a precessing jet than for standing jets with otherwise identical parameters as a result of the effectively increased interaction area. We obtain synthetic radio maps for all jets, from which one can see that dynamical flow features are clearly linked with enhanced emission sites. Conclusions: The

  2. Full 3-D cluster-based iterative image reconstruction tool for a small animal PET camera

    NASA Astrophysics Data System (ADS)

    Valastyán, I.; Imrek, J.; Molnár, J.; Novák, D.; Balkay, L.; Emri, M.; Trón, L.; Bükki, T.; Kerek, A.

    2007-02-01

    Iterative reconstruction methods are commonly used to obtain images with high resolution and good signal-to-noise ratio in nuclear imaging. The aim of this work was to develop a scalable, fast, cluster based, fully 3-D iterative image reconstruction package for our small animal PET camera, the miniPET. The reconstruction package is developed to determine the 3-D radioactivity distribution from list mode type of data sets and it can also simulate noise-free projections of digital phantoms. We separated the system matrix generation and the fully 3-D iterative reconstruction process. As the detector geometry is fixed for a given camera, the system matrix describing this geometry is calculated only once and used for every image reconstruction, making the process much faster. The Poisson and the random noise sensitivity of the ML-EM iterative algorithm were studied for our small animal PET system with the help of the simulation and reconstruction tool. The reconstruction tool has also been tested with data collected by the miniPET from a line and a cylinder shaped phantom and also a rat.

  3. 3-D land subsidence simulation using the NDIS package for MODFLOW

    NASA Astrophysics Data System (ADS)

    Kang, D. H.; Li, J.

    2015-11-01

    The standard subsidence package for MODFLOW, MODFLOW-SUB simulates aquifer-system compaction and subsidence assuming that only 1-D-vertical displacement of the aquifer system occurs in response to applied stresses such as drawdowns accompanying groundwater extraction. In the present paper, 3-D movement of an aquifer system in responses to one or more pumping wells is considered using the new aquifer-system deformation package for MODFLOW, NDIS. The simulation of aquifer- system 3-D movement using NDIS was conducted with a stress or hydraulic head dependent specific storage coefficient to simulate nonlinear deformation behavior of aquifer-system sedimentary materials. NDIS's numerical simulation for aquifer horizontal movement is consistent with an analytic solution for horizontal motion in response to pumping from a leaky confined aquifer (Li, 2007). For purposes of comparison, vertical subsidence of the aquifer system in response to groundwater pumping is simulated by the both the NDIS and MODFLOW-SUB models. The results of the simulations show that land subsidence simulated by MODFLOW-SUB is significantly larger and less sensitive to pumping rate and time than that simulated by NDIS. The NDIS simulations also suggest that if the total pumpage is the same, pumping from a single well may induce more land subsidence than pumping from multiple wells.

  4. 3D fingerprint imaging system based on full-field fringe projection profilometry

    NASA Astrophysics Data System (ADS)

    Huang, Shujun; Zhang, Zonghua; Zhao, Yan; Dai, Jie; Chen, Chao; Xu, Yongjia; Zhang, E.; Xie, Lili

    2014-01-01

    As an unique, unchangeable and easily acquired biometrics, fingerprint has been widely studied in academics and applied in many fields over the years. The traditional fingerprint recognition methods are based on the obtained 2D feature of fingerprint. However, fingerprint is a 3D biological characteristic. The mapping from 3D to 2D loses 1D information and causes nonlinear distortion of the captured fingerprint. Therefore, it is becoming more and more important to obtain 3D fingerprint information for recognition. In this paper, a novel 3D fingerprint imaging system is presented based on fringe projection technique to obtain 3D features and the corresponding color texture information. A series of color sinusoidal fringe patterns with optimum three-fringe numbers are projected onto a finger surface. From another viewpoint, the fringe patterns are deformed by the finger surface and captured by a CCD camera. 3D shape data of the finger can be obtained from the captured fringe pattern images. This paper studies the prototype of the 3D fingerprint imaging system, including principle of 3D fingerprint acquisition, hardware design of the 3D imaging system, 3D calibration of the system, and software development. Some experiments are carried out by acquiring several 3D fingerprint data. The experimental results demonstrate the feasibility of the proposed 3D fingerprint imaging system.

  5. Hough-based recognition of complex 3-D road scenes

    NASA Astrophysics Data System (ADS)

    Foresti, Gian L.; Regazzoni, Carlo S.

    1992-02-01

    In this paper, we address the problem of the object recognition in a complex 3-D scene by detecting the 2-D object projection on the image-plane for an autonomous vehicle driving; in particular, the problems of road detection and obstacle avoidance in natural road scenes are investigated. A new implementation of the Hough Transform (HT), called Labeled Hough Transform (LHT), to extract and group symbolic features is here presented; the novelty of this method, in respect to the traditional approach, consists in the capability of splitting a maximum in the parameter space into noncontiguous segments, while performing voting. Results are presented on a road image containing obstacles which show the efficiency, good quality, and time performances of the algorithm.

  6. Novel interactive virtual showcase based on 3D multitouch technology

    NASA Astrophysics Data System (ADS)

    Yang, Tao; Liu, Yue; Lu, You; Wang, Yongtian

    2009-11-01

    A new interactive virtual showcase is proposed in this paper. With the help of virtual reality technology, the user of the proposed system can watch the virtual objects floating in the air from all four sides and interact with the virtual objects by touching the four surfaces of the virtual showcase. Unlike traditional multitouch system, this system cannot only realize multi-touch on a plane to implement 2D translation, 2D scaling, and 2D rotation of the objects; it can also realize the 3D interaction of the virtual objects by recognizing and analyzing the multi-touch that can be simultaneously captured from the four planes. Experimental results show the potential of the proposed system to be applied in the exhibition of historical relics and other precious goods.

  7. 3-D Adaptive Sparsity Based Image Compression With Applications to Optical Coherence Tomography.

    PubMed

    Fang, Leyuan; Li, Shutao; Kang, Xudong; Izatt, Joseph A; Farsiu, Sina

    2015-06-01

    We present a novel general-purpose compression method for tomographic images, termed 3D adaptive sparse representation based compression (3D-ASRC). In this paper, we focus on applications of 3D-ASRC for the compression of ophthalmic 3D optical coherence tomography (OCT) images. The 3D-ASRC algorithm exploits correlations among adjacent OCT images to improve compression performance, yet is sensitive to preserving their differences. Due to the inherent denoising mechanism of the sparsity based 3D-ASRC, the quality of the compressed images are often better than the raw images they are based on. Experiments on clinical-grade retinal OCT images demonstrate the superiority of the proposed 3D-ASRC over other well-known compression methods. PMID:25561591

  8. Research on urban rapid 3D modeling and application based on CGA rule

    NASA Astrophysics Data System (ADS)

    Li, Jing-wen; Jiang, Jian-wu; Zhou, Song; Yin, Shou-qiang

    2015-12-01

    Use CityEngine as the 3D modeling platform, research on urban rapid 3D modeling technology based on the CGA(Computer Generated Architectur) rule , solved the problem of the rapid creation of urban 3D model in large scenes , and research on building texture processing and 3D model optimization techniques based on CGA rule , using component modeling method , solved the problem of texture distortion and model redundancy in the traditional fast modeling 3D model , and development of a three-dimensional view and analysis system based on ArcGIS Engine , realization of 3D model query , distance measurement , specific path flight , 3D marking , Scene export,etc.

  9. 3-D Adaptive Sparsity Based Image Compression with Applications to Optical Coherence Tomography

    PubMed Central

    Fang, Leyuan; Li, Shutao; Kang, Xudong; Izatt, Joseph A.; Farsiu, Sina

    2015-01-01

    We present a novel general-purpose compression method for tomographic images, termed 3D adaptive sparse representation based compression (3D-ASRC). In this paper, we focus on applications of 3D-ASRC for the compression of ophthalmic 3D optical coherence tomography (OCT) images. The 3D-ASRC algorithm exploits correlations among adjacent OCT images to improve compression performance, yet is sensitive to preserving their differences. Due to the inherent denoising mechanism of the sparsity based 3D-ASRC, the quality of the compressed images are often better than the raw images they are based on. Experiments on clinical-grade retinal OCT images demonstrate the superiority of the proposed 3D-ASRC over other well-known compression methods. PMID:25561591

  10. Secondary reconnection, energisation and turbulence in dipolarisation fronts: results of a 3D kinetic simulation campaign

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni; Goldman, Martin; Newman, David; olshevskyi, Vyacheslav; Markidis, Stefano

    2016-04-01

    Dipolarization fronts (DF) are formed by reconnection outflows interacting with the pre-existing environment. These regions are host of important energy exchanges [1], particle acceleration [2] and a complex structure and evolution [3]. Our recent work has investigated these regions via fully kinetic 3D simulations [4]. As reported recently on Nature Physics [3], based on 3D fully kinetic simulations started with a well defined x-line, we observe that in the DF reconnection transitions towards a more chaotic regime. In the fronts an instability devel- ops caused by the local gradients of the density and by the unfavourable acceleration and field line curvature. The consequence is the break up of the fronts in a fashion similar to the classical fluid Rayleigh-Taylor instability with the formation of "fingers" of plasma and embedded magnetic fields. These fingers interact and produce secondary reconnection sites. We present several different diagnostics that prove the existence of these secondary reconnection sites. Each site is surrounded by its own electron diffusion region. At the fronts the ions are generally not magnetized and considerable ion slippage is present. The discovery we present is that electrons are also slipping, forming localized diffusion regions near secondary reconnection sites [1]. The consequence of this discovery is twofold. First, the instability in the fronts has strong energetic implications. We observe that the energy transfer locally is very strong, an order of magnitude stronger than in the "X" line. However, this energy transfer is of both signs as it is natural for a wavy rippling with regions of magnetic to kinetic and regions of kinetic to magnetic energy conversion. Second, and most important for this session, is that MMS should not limit the search for electron diffusion regions to the location marked with X in all reconnection cartoons. Our simulations predict more numerous and perhaps more easily measurable electron diffusion

  11. Description of FEL3D: A three dimensional simulation code for TOK and FEL

    SciTech Connect

    Dutt, S.; Friedman, A.; Gover, A.

    1988-10-20

    FEL3D is a three dimensional simulation code, written for the purpose of calculating the parameters of coherent radiation emitted by electrons in an undulator. The program was written predominantly for simulating the coherent super-radiant harmonic frequency emission of electrons which are being bunched by an external laser beam while propagating in an undulator magnet. This super-radiant emission is to be studied in the TOK (transverse optical klystron) experiment, which is under construction in the NSLS department at Brookhaven National Laboratory. The program can also calculate the stimulated emission radiometric properties of a free electron laser (FEL) taking into account three dimensional effects. While this application is presently limited to the small gain operation regime of FEL's, extension to the high gain regime is expected to be relatively easy. The code is based on a semi-analytical concept. Instead of a full numerical solution of the Maxwell-Lorentz equations, the trajectories of the electron in the wiggler field are calculated analytically, and the radiation fields are expanded in terms of free space eigen-modes. This approach permits efficient computation, with a computation time of about 0.1 sec/electron on the BNL IBM 3090. The code reflects the important three dimensional features of the electron beam, the modulating laser beam, and the emitted radiation field. The statistical approach is based on averaging over the electron initial conditions according to a given distribution function in phase space, rather than via Monte-Carlo simulation. The present version of the program is written for uniform periodic wiggler field, but extension to nonuniform fields is straightforward. 4 figs., 5 tabs.

  12. A new algorithm of laser 3D visualization based on space-slice

    NASA Astrophysics Data System (ADS)

    Yang, Hui; Song, Yanfeng; Song, Yong; Cao, Jie; Hao, Qun

    2013-12-01

    Traditional visualization algorithms based on three-dimensional (3D) laser point cloud data consist of two steps: stripe point cloud data into different target objects and establish the 3D surface models of the target objects to realize visualization using interpolation point or surface fitting method. However, some disadvantages, such as low efficiency, loss of image details, exist in most of these algorithms. In order to cope with these problems, a 3D visualization algorithm based on space-slice is proposed in this paper, which includes two steps: data classification and image reconstruction. In the first step, edge detection method is used to check the parametric continuity and extract edges to classify data into different target regions preliminarily. In the second stage, the divided data is split further into space-slice according to coordinates. Based on space-slice of the point cloud data, one-dimensional interpolation methods is adopted to get the curves connected by each group of cloud point data smoother. In the end, these interpolation points obtained from each group are made by the use of getting the fitting surface. As expected, visual morphology of the objects is obtained. The simulation experiment results compared with real scenes show that the final visual images have explicit details and the overall visual result is natural.

  13. The simulation of 3D microcalcification clusters in 2D digital mammography and breast tomosynthesis

    SciTech Connect

    Shaheen, Eman; Van Ongeval, Chantal; Zanca, Federica; Cockmartin, Lesley; Marshall, Nicholas; Jacobs, Jurgen; Young, Kenneth C.; Dance, David R.; Bosmans, Hilde

    2011-12-15

    Purpose: This work proposes a new method of building 3D models of microcalcification clusters and describes the validation of their realistic appearance when simulated into 2D digital mammograms and into breast tomosynthesis images. Methods: A micro-CT unit was used to scan 23 breast biopsy specimens of microcalcification clusters with malignant and benign characteristics and their 3D reconstructed datasets were segmented to obtain 3D models of microcalcification clusters. These models were then adjusted for the x-ray spectrum used and for the system resolution and simulated into 2D projection images to obtain mammograms after image processing and into tomographic sequences of projection images, which were then reconstructed to form 3D tomosynthesis datasets. Six radiologists were asked to distinguish between 40 real and 40 simulated clusters of microcalcifications in two separate studies on 2D mammography and tomosynthesis datasets. Receiver operating characteristic (ROC) analysis was used to test the ability of each observer to distinguish between simulated and real microcalcification clusters. The kappa statistic was applied to assess how often the individual simulated and real microcalcification clusters had received similar scores (''agreement'') on their realistic appearance in both modalities. This analysis was performed for all readers and for the real and the simulated group of microcalcification clusters separately. ''Poor'' agreement would reflect radiologists' confusion between simulated and real clusters, i.e., lesions not systematically evaluated in both modalities as either simulated or real, and would therefore be interpreted as a success of the present models. Results: The area under the ROC curve, averaged over the observers, was 0.55 (95% confidence interval [0.44, 0.66]) for the 2D study, and 0.46 (95% confidence interval [0.29, 0.64]) for the tomosynthesis study, indicating no statistically significant difference between real and simulated

  14. 3D thermal modeling of TRISO fuel coupled with neutronic simulation

    SciTech Connect

    Hu, Jianwei; Uddin, Rizwan

    2010-01-01

    The Very High Temperature Gas Reactor (VHTR) is widely considered as one of the top candidates identified in the Next Generation Nuclear Power-plant (NGNP) Technology Roadmap under the U.S . Depanment of Energy's Generation IV program. TRlSO particle is a common element among different VHTR designs and its performance is critical to the safety and reliability of the whole reactor. A TRISO particle experiences complex thermo-mechanical changes during reactor operation in high temperature and high burnup conditions. TRISO fuel performance analysis requires evaluation of these changes on micro scale. Since most of these changes are temperature dependent, 3D thermal modeling of TRISO fuel is a crucial step of the whole analysis package. In this paper, a 3D numerical thermal model was developed to calculate temperature distribution inside TRISO and pebble under different scenarios. 3D simulation is required because pebbles or TRISOs are always subjected to asymmetric thermal conditions since they are randomly packed together. The numerical model was developed using finite difference method and it was benchmarked against ID analytical results and also results reported from literature. Monte-Carlo models were set up to calculate radial power density profile. Complex convective boundary condition was applied on the pebble outer surface. Three reactors were simulated using this model to calculate temperature distribution under different power levels. Two asymmetric boundary conditions were applied to the pebble to test the 3D capabilities. A gas bubble was hypothesized inside the TRISO kernel and 3D simulation was also carried out under this scenario. Intuition-coherent results were obtained and reported in this paper.

  15. A global model simulation for 3-D radiative transfer impact on surface hydrology over the Sierra Nevada and Rocky Mountains

    NASA Astrophysics Data System (ADS)

    Lee, W.-L.; Gu, Y.; Liou, K. N.; Leung, L. R.; Hsu, H.-H.

    2015-05-01

    We investigate 3-D mountain effects on solar flux distributions and their impact on surface hydrology over the western United States, specifically the Rocky Mountains and the Sierra Nevada, using the global CCSM4 (Community Climate System Model version 4; Community Atmosphere Model/Community Land Model - CAM4/CLM4) with a 0.23° x 0.31° resolution for simulations over 6 years. In a 3-D radiative transfer parameterization, we have updated surface topography data from a resolution of 1 km to 90 m to improve parameterization accuracy. In addition, we have also modified the upward-flux deviation (3-D-PP (plane-parallel)) adjustment to ensure that the energy balance at the surface is conserved in global climate simulations based on 3-D radiation parameterization. We show that deviations in the net surface fluxes are not only affected by 3-D mountains but also influenced by feedbacks of cloud and snow in association with the long-term simulations. Deviations in sensible heat and surface temperature generally follow the patterns of net surface solar flux. The monthly snow water equivalent (SWE) deviations show an increase in lower elevations due to reduced snowmelt, leading to a reduction in cumulative runoff. Over higher-elevation areas, negative SWE deviations are found because of increased solar radiation available at the surface. Simulated precipitation increases for lower elevations, while it decreases for higher elevations, with a minimum in April. Liquid runoff significantly decreases at higher elevations after April due to reduced SWE and precipitation.

  16. Meshing Preprocessor for the Mesoscopic 3D Finite Element Simulation of 2D and Interlock Fabric Deformation

    NASA Astrophysics Data System (ADS)

    Wendling, A.; Daniel, J. L.; Hivet, G.; Vidal-Sallé, E.; Boisse, P.

    2015-12-01

    Numerical simulation is a powerful tool to predict the mechanical behavior and the feasibility of composite parts. Among the available numerical approaches, as far as woven reinforced composites are concerned, 3D finite element simulation at the mesoscopic scale leads to a good compromise between realism and complexity. At this scale, the fibrous reinforcement is modeled by an interlacement of yarns assumed to be homogeneous that have to be accurately represented. Among the numerous issues induced by these simulations, the first one consists in providing a representative meshed geometrical model of the unit cell at the mesoscopic scale. The second one consists in enabling a fast data input in the finite element software (contacts definition, boundary conditions, elements reorientation, etc.) so as to obtain results within reasonable time. Based on parameterized 3D CAD modeling tool of unit-cells of dry fabrics already developed, this paper presents an efficient strategy which permits an automated meshing of the models with 3D hexahedral elements and to accelerate of several orders of magnitude the simulation data input. Finally, the overall modeling strategy is illustrated by examples of finite element simulation of the mechanical behavior of fabrics.

  17. A cut cell method for the 3D simulation of Crookes radiometer

    SciTech Connect

    Dechriste, Guillaume; Mieussens, Luc

    2014-12-09

    Devices involved in engineering applications, such as vacuum pumps or MEMS, may be made of several moving parts. This raise the issue of the simulation of rarefied gas flow around moving boundaries. We propose a simple process, known as cut cell method, to treat the motion of a solid body in the framework of the deterministic solving of a kinetic equation. Up to our knowledge, this is the first time that this approach has been used for this kind of simulations. The method is illustrated by the 2D and 3D simulations of a Crookes radiometer.

  18. Random Telegraph Signal Amplitudes in Sub 100 nm (Decanano) MOSFETs: A 3D 'Atomistic' Simulation Study

    NASA Technical Reports Server (NTRS)

    Asenov, Asen; Balasubramaniam, R.; Brown, A. R.; Davies, J. H.; Saini, Subhash

    2000-01-01

    In this paper we use 3D simulations to study the amplitudes of random telegraph signals (RTS) associated with the trapping of a single carrier in interface states in the channel of sub 100 nm (decanano) MOSFETs. Both simulations using continuous doping charge and random discrete dopants in the active region of the MOSFETs are presented. We have studied the dependence of the RTS amplitudes on the position of the trapped charge in the channel and on the device design parameters. We have observed a significant increase in the maximum RTS amplitude when discrete random dopants are employed in the simulations.

  19. Reactive Flow Modeling of Liquid Explosives via ALE3D/Cheetah Simulations

    SciTech Connect

    Kuo, I W; Bastea, S; Fried, L E

    2010-03-10

    We carried out reactive flow simulations of liquid explosives such as nitromethane using the hydrodynamic code ALE3D coupled with equations of state and reaction kinetics modeled by the thermochemical code Cheetah. The simulation set-up was chosen to mimic cylinder experiments. For pure unconfined nitromethane we find that the failure diameter and detonation velocity dependence on charge diameter are in agreement with available experimental results. Such simulations are likely to be useful for determining detonability and failure behavior for a wide range of experimental conditions and explosive compounds.

  20. 3D modeling and simulation of 2G HTS stacks and coils

    NASA Astrophysics Data System (ADS)

    Zermeño, Víctor M. R.; Grilli, Francesco

    2014-04-01

    Use of 2G HTS coated conductors in several power applications has become popular in recent years. Their large current density under high magnetic fields makes them suitable candidates for high power capacity applications such as stacks of tapes, coils, magnets, cables and current leads. For this reason, modeling and simulation of their electromagnetic properties is very desirable in the design and optimization processes. For many applications, when symmetries allow it, simple models consisting of 1D or 2D representations are well suited for providing a satisfying description of the problem at hand. However, certain designs such as racetrack coils and finite-length or non-straight stacks, do pose a 3D problem that cannot be easily reduced to a 2D configuration. Full 3D models have been developed, but their use for simulating superconducting devices is a very challenging task involving a large-scale computational problem. In this work, we present a new method to simulate the electromagnetic transient behavior of 2G HTS stacks and coils. The method, originally used to model stacks of straight superconducting tapes or circular coils in 2D, is now extended to 3D. The main idea is to construct an anisotropic bulk-like equivalent for the stack or coil, such that the geometrical layout of the internal alternating structures of insulating, metallic, superconducting and substrate layers is reduced while keeping the overall electromagnetic behavior of the original device. Besides the aforementioned interest in modeling and simulating 2G HTS coated conductors, this work provides a further step towards efficient 3D modeling and simulation of superconducting devices for large-scale applications.

  1. An Overview of 3d Topology for Ladm-Based Objects

    NASA Astrophysics Data System (ADS)

    Zulkifli, N. A.; Rahman, A. A.; van Oosterom, P.

    2015-10-01

    This paper reviews 3D topology within Land Administration Domain Model (LADM) international standard. It is important to review characteristic of the different 3D topological models and to choose the most suitable model for certain applications. The characteristic of the different 3D topological models are based on several main aspects (e.g. space or plane partition, used primitives, constructive rules, orientation and explicit or implicit relationships). The most suitable 3D topological model depends on the type of application it is used for. There is no single 3D topology model best suitable for all types of applications. Therefore, it is very important to define the requirements of the 3D topology model. The context of this paper is a 3D topology for LADM-based objects.

  2. Test-particle Orbit Simulations in Fields from a Realistic 3D MHD Simulation

    NASA Astrophysics Data System (ADS)

    Decker, R. B.; Opher, M.; Hill, M. E.

    2007-05-01

    Models designed to explore the global structure of the heliosphere have become increasing sophisticated. Incentives to increase and to further explore the predictive capabilities of such models include the entry of the Voyager spacecraft into the foreshock region of the termination shock (TS), Voyager 1 in mid-2002 and Voyager 2 in late 2004, and the crossing of the TS and passage into the heliosheath (HSH) of Voyager 1 in 2004 day 351. Using the electric and magnetic fields generated by a MHD model of a 3D, asymmetric heliosphere [Opher et al., Ap. J. L., 640, 2006], we have developed full-particle and adiabatic-orbit codes to simulate the motion of test particles in the solar wind, TS, and HSH environments. The full-particle orbits are necessary to investigate energetic ion (e.g., anomalous and galactic cosmic ray) motion at the TS and within the heliospheric current sheet that is included in the MHD model. Adiabatic orbits are used to study particle motion in the much larger volume of the HSH where the non-homogeneous model fields produce complex guiding center motions, including mirroring in local field compressions. We will present results from these orbit computations, which are intended to provide an initial, albeit simplified, look at the propagation of high-energy charged particles, in the scatter-free limit, in the best model of the TS/HSH field configurations currently available. We will also display drift paths of high-energy ions in the HSH fields using the guiding center drift equations that are applicable in the limit of diffusive propagation.

  3. 3-D Simulation of a prototype pump-turbine during starting period in turbine model

    NASA Astrophysics Data System (ADS)

    Chen, T. J.; Luo, X. Q.; Guo, P. C.; Wu, Y. L.

    2013-12-01

    Three dimensional (3-D), unsteady flows in a prototype pump-turbine during a transient process of start-up at no load condition were studied using the computational fluid dynamics method. The fluid coupling and DM method were used to calculate the rotational speed for each time step. The dynamic mesh (DM) method and remeshing method were applied to simulate the rotation of guide vanes. Calculations were performed based on the bar v2-f turbulence model, and the calculation results were compared and verified by experimental data. Transient explicit characteristics such as the flow-rate, head, torque of the runner etc., as well as the internal flow during the start-up were analyzed. The amplitude of pressure fluctuation was larger as the rotational speed of runner increased. The pump-turbine was more unstable with the decrease of the moment of inertia. The impact jet flow in the runner has a direct relationship with the increase of the torque of runner. No stall phenomenon in the runner when the pump-turbine runs close to no load opening condition. This calculation was based on a prototype of a pumped storage power station and the computational method could be used in the fault diagnosis of transient operation.

  4. Integrated 3-D Ground-Penetrating Radar, Outcrop, and Borehole Data Applied to Reservoir Characterization and Flow Simulation

    SciTech Connect

    George McMechan; Rucsandra Corbeanu; Craig Forster; Kristian Soegaard; Xiaoxian Zeng; Carlos Aiken; Robert Szerbiak; Janok Bhattacharya; Michael Wizevich; Xueming Xu; Stephen Snelgrove; Karen Roche; Siang Joo Lim; Djuro Navakovic; Christopher White; Laura Crossey; Deming Wang; John Thurmond; William Hammon III; Mamadou BAlde; Ari Menitove

    2001-08-31

    OAK-B135 (IPLD Cleared) Existing reservoir models are based on 2-D outcrop studies; 3-D aspects are inferred from correlation between wells, and so are inadequately constrained for reservoir simulations. To overcome these deficiencies, we initiated a multidimensional characterization of reservoir analogs in the Cretaceous Ferron Sandstone in Utah. The study was conducted at two sites (Corbula Gulch and Coyote Basin); results from both sites are contained in this report. Detailed sedimentary facies maps of cliff faces define the geometry and distribution of potential reservoir flow units, barriers and baffles at the outcrop. High resolution 2-D and 3-D ground-penetrating radar (GPR) images extend these reservoir characteristics into 3-D, to allow development of realistic 3-D reservoir models. Models use geometric information from the mapping and the GPR data, petrophysical data from surface and cliff-face outcrops, lab analyses of outcrop and core samples, and petrography. The measurements are all integrated into a single coordinate system using GPS and laser mapping of the main sedimentological features and boundaries.The final step is analysis of results of 3-D fluid flow modeling to demonstrate applicability of our reservoir analog studies to well siting and reservoir engineering for maximization of hydrocarbon production. The main goals of the project are achieved. These are the construction of a deterministic 3-D reservoir analog model from a variety of geophysical and geologic measurements at the field sites, integrating these into comprehensive petrophysical models, and flow simulations through these models. This unique approach represents a significant advance in characterization and use of reservoir analogs.

  5. Intergrated 3-D Ground-Penetrating Radar,Outcrop,and Boreholoe Data Applied to Reservoir Characterization and Flow Simulation.

    SciTech Connect

    McMechan et al.

    2001-08-31

    Existing reservoir models are based on 2-D outcrop;3-D aspects are inferred from correlation between wells,and so are inadequately constrained for reservoir simulations. To overcome these deficiencies, we initiated a multidimensional characterization of reservoir analogs in the Cretaceous Ferron Sandstone in Utah.The study was conducted at two sites(Corbula Gulch Coyote Basin); results from both sites are contained in this report. Detailed sedimentary facies maps of cliff faces define the geometry and distribution of potential reservoir flow units, barriers and baffles at the outcrop. High resolution 2-D and 3-D ground penetrating radar(GPR) images extend these reservoir characteristics into 3-D to allow development of realistic 3-D reservoir models. Models use geometric information from the mapping and the GPR data, petrophysical data from surface and cliff-face outcrops, lab analyses of outcrop and core samples, and petrography. The measurements are all integrated into a single coordinate system using GPS and laser mapping of the main sedimentologic features and boundaries. The final step is analysis of results of 3-D fluid flow modeling to demonstrate applicability of our reservoir analog studies to well siting and reservoir engineering for maximization of hydrocarbon production. The main goals of this project are achieved. These are the construction of a deterministic 3-D reservoir analog model from a variety of geophysical and geologic measurements at the field sites, integrating these into comprehensive petrophysical models, and flow simulation through these models. This unique approach represents a significant advance in characterization and use of reservoir analogs. To data,the team has presented five papers at GSA and AAPG meetings produced a technical manual, and completed 15 technical papers. The latter are the main content of this final report. In addition,the project became part of 5 PhD dissertations, 3 MS theses,and two senior undergraduate research

  6. Momentum Transport: 2D and 3D Cloud Resolving Model Simulations

    NASA Technical Reports Server (NTRS)

    Tao, Wei-Kuo

    2001-01-01

    The major objective of this study is to investigate the momentum budgets associated with several convective systems that developed during the TOGA COARE IOP (west Pacific warm pool region) and GATE (east Atlantic region). The tool for this study is the improved Goddard Cumulas Ensemble (GCE) model which includes a 3-class ice-phase microphysical scheme, explicit cloud radiative interactive processes and air-sea interactive surface processes. The model domain contains 256 x 256 grid points (with 2 km resolution) in the horizontal and 38 grid points (to a depth of 22 km) in the vertical. The 2D domain has 1024 grid points. The simulations were performed over a 7-day time period (December 19-26, 1992, for TOGA COARE and September 1-7, 1994 for GATE). Cyclic literal boundary conditions are required for this type of long-term integration. Two well organized squall systems (TOGA, COARE February 22, 1993, and GATE September 12, 1994) were also simulated using the 3D GCE model. Only 9 h simulations were required to cover the life time of the squall systems. the lateral boundary conditions were open for these two squall systems simulations. the following will be examined: (1) the momentum budgets in the convective and stratiform regions, (2) the relationship between momentum transport and cloud organization (i.e., well organized squall lines versus less organized convective), (3) the differences and similarities in momentum transport between 2D and 3D simulated convective systems, and (4) the differences and similarities in momentum budgets between cloud systems simulated with open and cyclic lateral boundary conditions. Preliminary results indicate that there are only small differences between 2D and 3D simulated momentum budgets. Major differences occur, however, between momentum budgets associated with squall systems simulated using different lateral boundary conditions.

  7. Selectivity of seismic electric signal (SES) of the 2000 Izu earthquake swarm: a 3D FEM numerical simulation model.

    PubMed

    Huang, Qinghua; Lin, Yufeng

    2010-01-01

    Although seismic electric signal (SES) has been used for short-term prediction of earthquakes, selectivity of SES still remains as one of the mysterious features. As a case study, we made a numerical simulation based on a 3D finite element method (FEM) on the selectivity of SES observed in the case of the 2000 Izu earthquake swarm. Our numerical results indicated that the existence of conductive channel under Niijima island could explain the reported SES selectivity. PMID:20228625

  8. Selectivity of seismic electric signal (SES) of the 2000 Izu earthquake swarm: a 3D FEM numerical simulation model

    PubMed Central

    Huang, Qinghua; Lin, Yufeng

    2010-01-01

    Although seismic electric signal (SES) has been used for short-term prediction of earthquakes, selectivity of SES still remains as one of the mysterious features. As a case study, we made a numerical simulation based on a 3D finite element method (FEM) on the selectivity of SES observed in the case of the 2000 Izu earthquake swarm. Our numerical results indicated that the existence of conductive channel under Niijima island could explain the reported SES selectivity. PMID:20228625

  9. Interactive 3D-PDF Presentations for the Simulation and Quantification of Extended Endoscopic Endonasal Surgical Approaches.

    PubMed

    Mavar-Haramija, Marija; Prats-Galino, Alberto; Méndez, Juan A Juanes; Puigdelívoll-Sánchez, Anna; de Notaris, Matteo

    2015-10-01

    A three-dimensional (3D) model of the skull base was reconstructed from the pre- and post-dissection head CT images and embedded in a Portable Document Format (PDF) file, which can be opened by freely available software and used offline. The CT images were segmented using a specific 3D software platform for biomedical data, and the resulting 3D geometrical models of anatomical structures were used for dual purpose: to simulate the extended endoscopic endonasal transsphenoidal approaches and to perform the quantitative analysis of the procedures. The analysis consisted of bone removal quantification and the calculation of quantitative parameters (surgical freedom and exposure area) of each procedure. The results are presented in three PDF documents containing JavaScript-based functions. The 3D-PDF files include reconstructions of the nasal structures (nasal septum, vomer, middle turbinates), the bony structures of the anterior skull base and maxillofacial region and partial reconstructions of the optic nerve, the hypoglossal and vidian canals and the internal carotid arteries. Alongside the anatomical model, axial, sagittal and coronal CT images are shown. Interactive 3D presentations were created to explain the surgery and the associated quantification methods step-by-step. The resulting 3D-PDF files allow the user to interact with the model through easily available software, free of charge and in an intuitive manner. The files are available for offline use on a personal computer and no previous specialized knowledge in informatics is required. The documents can be downloaded at http://hdl.handle.net/2445/55224 . PMID:26306875

  10. 3D measurement method based on combined temporal encoding structured light

    NASA Astrophysics Data System (ADS)

    Yu, Xiaoyang; Wang, Yang; Yu, Shuang; Cheng, Hao; Sun, Xiaoming; Yu, Shuchun; Chen, Deyun

    2013-10-01

    Three-dimensional (3D) vision measurement technology based on encoding structured light plays an important role and has become the main development trend in the field of 3D non-contact measurement. However, how to synthetically improve measurement speed, accuracy and sampling density is still a difficult problem. Thus in the present work, a novel 3D measurement method based on temporal encoding structured light by combining trapezoidal phase-shifting pattern and cyclic code pattern is proposed. Due to trapezoidal phase-shifting has the advantages of high sampling density and high-speed, the proposed method can maintain these advantages by using cyclic code to expand the range of trapezoidal phase-shifting. In addition, the correction scheme is designed to solve the problem of cycle dislocation. Finally, simulation experimental platform is built with 3ds max and MATLAB. Experimental analyses and results show that, the maximal error is less than 3 mm in the range from 400 mm to 1100 mm, cycle dislocation correction has a good effect.

  11. Characterization of double modified internal gate pixel by 3D simulation study

    NASA Astrophysics Data System (ADS)

    Aurola, A.; Marochkin, V.; Tuuva, T.

    2015-01-01

    We have developed a novel detector concept based on Modified Internal Gate Field Effect Transistor (MIGFET) wherein a buried Modified Internal Gate (MIG) is implanted underneath a channel of a FET. In between the MIG and the channel of the FET there is a depleted semiconductor material forming a potential barrier between charges in the channel and similar type signal charges located in the MIG. The signal charges in the MIG have a measurable effect on the conductance of the channel. In this paper a double MIGFET pixel is investigated comprising two MIGFETs. By transferring the signal charges between the two MIGs Non-Destructive Correlated Double Sampling Readout (NDCDSR) is enabled. The proposed MIG radiation detector suits particularly well for low-light-level imaging, X-ray spectroscopy, as well as synchrotron and X-ray Free Electron Laser (XFEL) facilities. The reason for the excellent X-ray detection performance stems from the fact that interface related issues can be considerably mitigated since interface generated dark noise can be completely avoided and interface generated 1/f and Random Telegraph Signal (RTS) noise can be considerably reduced due to a deep buried channel readout configuration. Electrical parameters of the double MIGFET pixel have been evaluated by 3D TCAD simulation study. Simulation results show the absence of interface generated dark noise, significantly reduced interface generated 1/f and RTS noise, well performing NDCDSR operation, and blooming protection due to an inherent vertical anti-blooming structure. In addition, the backside illuminated thick fully depleted pixel design provides a homogeneous radiation entry window, low crosstalk due to lack of diffusion, and good quantum efficiency for low energy X-rays and NIR light. These facts result in excellent Signal-to-Noise Ratio (SNR) and very low crosstalk enabling thus excellent X-ray energy and spatial resolution. The simulation demonstrates the charge to current conversion gain for

  12. New 3-D microarray platform based on macroporous polymer monoliths.

    PubMed

    Rober, M; Walter, J; Vlakh, E; Stahl, F; Kasper, C; Tennikova, T

    2009-06-30

    Polymer macroporous monoliths are widely used as efficient sorbents in different, mostly dynamic, interphase processes. In this paper, monolithic materials strongly bound to the inert glass surface are suggested as operative matrices at the development of three-dimensional (3-D) microarrays. For this purpose, several rigid macroporous copolymers differed by reactivity and hydrophobic-hydrophilic properties were synthesized and tested: (1) glycidyl methacrylate-co-ethylene dimethacrylate (poly(GMA-co-EDMA)), (2) glycidyl methacrylate-co-glycerol dimethacrylate (poly(GMA-co-GDMA)), (3) N-hydroxyphthalimide ester of acrylic acid-co-glycidyl methacrylate-co-ethylene dimethacrylate (poly(HPIEAA-co-GMA-co-EDMA)), (4) 2-cyanoethyl methacrylate-co-ethylene dimethacrylate (poly(CEMA-co-EDMA)), and (5) 2-cyanoethyl methacrylate-co-2-hydroxyethyl methacrylate-co-ethylene dimethacrylate (poly(CEMA-co-HEMA-co-EDMA)). The constructed devices were used as platforms for protein microarrays construction and model mouse IgG-goat anti-mouse IgG affinity pair was used to demonstrate the potential of developed test-systems, as well as to optimize microanalytical conditions. The offered microarray platforms were applied to detect the bone tissue marker osteopontin directly in cell culture medium. PMID:19463569

  13. Blob Dynamics in 3D BOUT Simulations of Tokamak Edge Turbulence

    SciTech Connect

    Russell, D; D'Ippolito, D; Myra, J; Nevins, W; Xu, X

    2004-08-23

    Propagating filaments of enhanced plasma density, or blobs, observed in 3D numerical simulations of a diverted, neutral-fueled tokamak are studied. Fluctuations of vorticity, electrical potential {phi}, temperature T{sub e} and current density J{sub {parallel}} associated with the blobs have a dipole structure perpendicular to the magnetic field and propagate radially with large E {center_dot} B drift velocities (> 1 km/s). The simulation results are consistent with a 3D blob dynamics model that incorporates increased parallel plasma resistivity (from neutral cooling of the X-point region), blob disconnection from the divertor sheath, X-point closure of the current loops, and collisional physics to sustain the {phi}, T{sub e}, J{sub {parallel}} dipoles.

  14. 3D Kinetic Simulations of Topography-Induced Electric Fields at Itokawa Asteroid

    NASA Astrophysics Data System (ADS)

    Zimmerman, M. I.

    2015-12-01

    Results from a new 3D kinetic simulation code will be presented, showing how Itokawa's interaction with the solar wind plasma creates an ever-evolving electric field structure as the asteroid rotates. The simulations combine (1) a realistic surface shape model of Itokawa, (2) a careful and self-consistent accounting of surface charging processes, and (3) the freely-available FMMLib3d code library implementing the fast multipole method for electric field calculations. Fine details of the surface potential and electric grounding conditions, as revealed by this new code, could provide critical inputs into planning for a future asteroid retrieval mission in which extended, direct contact with the asteroid could occur.

  15. Validation of 3-D Ice Accretion Measurement Methodology for Experimental Aerodynamic Simulation

    NASA Technical Reports Server (NTRS)

    Broeren, Andy P.; Addy, Harold E., Jr.; Lee, Sam; Monastero, Marianne C.

    2014-01-01

    Determining the adverse aerodynamic effects due to ice accretion often relies on dry-air wind-tunnel testing of artificial, or simulated, ice shapes. Recent developments in ice accretion documentation methods have yielded a laser-scanning capability that can measure highly three-dimensional features of ice accreted in icing wind tunnels. The objective of this paper was to evaluate the aerodynamic accuracy of ice-accretion simulations generated from laser-scan data. Ice-accretion tests were conducted in the NASA Icing Research Tunnel using an 18-inch chord, 2-D straight wing with NACA 23012 airfoil section. For six ice accretion cases, a 3-D laser scan was performed to document the ice geometry prior to the molding process. Aerodynamic performance testing was conducted at the University of Illinois low-speed wind tunnel at a Reynolds number of 1.8 x 10(exp 6) and a Mach number of 0.18 with an 18-inch chord NACA 23012 airfoil model that was designed to accommodate the artificial ice shapes. The ice-accretion molds were used to fabricate one set of artificial ice shapes from polyurethane castings. The laser-scan data were used to fabricate another set of artificial ice shapes using rapid prototype manufacturing such as stereolithography. The iced-airfoil results with both sets of artificial ice shapes were compared to evaluate the aerodynamic simulation accuracy of the laser-scan data. For four of the six ice-accretion cases, there was excellent agreement in the iced-airfoil aerodynamic performance between the casting and laser-scan based simulations. For example, typical differences in iced-airfoil maximum lift coefficient were less than 3% with corresponding differences in stall angle of approximately one degree or less. The aerodynamic simulation accuracy reported in this paper has demonstrated the combined accuracy of the laser-scan and rapid-prototype manufacturing approach to simulating ice accretion for a NACA 23012 airfoil. For several of the ice

  16. Simulation of surface tension in 2D and 3D with smoothed particle hydrodynamics method

    NASA Astrophysics Data System (ADS)

    Zhang, Mingyu

    2010-09-01

    The methods for simulating surface tension with smoothed particle hydrodynamics (SPH) method in two dimensions and three dimensions are developed. In 2D surface tension model, the SPH particle on the boundary in 2D is detected dynamically according to the algorithm developed by Dilts [G.A. Dilts, Moving least-squares particle hydrodynamics II: conservation and boundaries, International Journal for Numerical Methods in Engineering 48 (2000) 1503-1524]. The boundary curve in 2D is reconstructed locally with Lagrangian interpolation polynomial. In 3D surface tension model, the SPH particle on the boundary in 3D is detected dynamically according to the algorithm developed by Haque and Dilts [A. Haque, G.A. Dilts, Three-dimensional boundary detection for particle methods, Journal of Computational Physics 226 (2007) 1710-1730]. The boundary surface in 3D is reconstructed locally with moving least squares (MLS) method. By transforming the coordinate system, it is guaranteed that the interface function is one-valued in the local coordinate system. The normal vector and curvature of the boundary surface are calculated according to the reconstructed boundary surface and then surface tension force can be calculated. Surface tension force acts only on the boundary particle. Density correction is applied to the boundary particle in order to remove the boundary inconsistency. The surface tension models in 2D and 3D have been applied to benchmark tests for surface tension. The ability of the current method applying to the simulation of surface tension in 2D and 3D is proved.

  17. Validation of a 3D/1D Simulation Tool for ICRF Antennas

    NASA Astrophysics Data System (ADS)

    Maggiora, R.; Lancellotti, V.; Milanesio, D.; Vecchi, G.; Kyrytsya, V.; Parisot, A.; Wukitch, S. J.

    2005-09-01

    TOPICA is an innovative tool for the simulation of the Ion Cyclotron Radio Frequency (ICRF) antenna systems that incorporates commercial-grade graphic interfaces into a fully 3D self-consistent description of the antenna geometry and an accurate description of the plasma; it can be considered as a "Virtual Prototyping Laboratory" to assist the detailed design phase of the antenna system. Recent theoretical and computational advances of the TOPICA code has allowed to incorporate a CAD drawing capability of the antenna geometry, with fully 3D geometrical modeling, and to combine it with a 1D accurate plasma description that takes into account density and temperature profiles, and FLR effects; the profiles are inserted directly from measured data (when available), or specified analytically by the user. The coaxial feeding line is modeled as such; computation and visualization of relevant parameters (input scattering parameters, current and field distributions, etc.) complete the suite. The approach to the problem is based on an integral-equation formulation for the self-consistent evaluation of the current distribution on the conductors. The environment has been subdivided in two coupled region: the plasma region and the vacuum region. The two problems are linked self-consistently by representing the field continuity in terms of equivalent (unknown) sources. In the vacuum region all the calculations are executed in the spatial (configuration) domain, and this allows triangular-facet description of the arbitrarily shaped conductors and associated currents; in the plasma region a spectral representation of the fields is used, which allows to enter the plasma effect via a surface impedance matrix; for this reason any plasma model can be used, and at present the FELICE code has been adopted; special techniques have been adopted to increase the numerical efficiency. The TOPICA suite has been previously tested against assessed codes and against measurements of mock-ups and

  18. 3-D Direct Simulation Monte Carlo modeling of comet 67P/Churyumov-Gerasimenko

    NASA Astrophysics Data System (ADS)

    Liao, Y.; Su, C.; Finklenburg, S.; Rubin, M.; Ip, W.; Keller, H.; Knollenberg, J.; Kührt, E.; Lai, I.; Skorov, Y.; Thomas, N.; Wu, J.; Chen, Y.

    2014-07-01

    After deep-space hibernation, ESA's Rosetta spacecraft has been successfully woken up and obtained the first images of comet 67P /Churyumov-Gerasimenko (C-G) in March 2014. It is expected that Rosetta will rendezvous with comet 67P and start to observe the nucleus and coma of the comet in the middle of 2014. As the comet approaches the Sun, a significant increase in activity is expected. Our aim is to understand the physical processes in the coma with the help of modeling in order to interpret the resulting measurements and establish observational and data analysis strategies. DSMC (Direct Simulation Monte Carlo) [1] is a very powerful numerical method to study rarefied gas flows such as cometary comae and has been used by several authors over the past decade to study cometary outflow [2,3]. Comparisons between DSMC and fluid techniques have also been performed to establish the limits of these techniques [2,4]. The drawback with 3D DSMC is that it is computationally highly intensive and thus time consuming. However, the performance can be dramatically increased with parallel computing on Graphic Processor Units (GPUs) [5]. We have already studied a case with comet 9P/Tempel 1 where the Deep Impact observations were used to define the shape of the nucleus and the outflow was simulated with the DSMC approach [6,7]. For comet 67P, we intend to determine the gas flow field in the innermost coma and the surface outgassing properties from analyses of the flow field, to investigate dust acceleration by gas drag, and to compare with observations (including time variability). The boundary conditions are implemented with a nucleus shape model [8] and thermal models which are based on the surface heat-balance equation. Several different parameter sets have been investigated. The calculations have been performed using the PDSC^{++} (Parallel Direct Simulation Monte Carlo) code [9] developed by Wu and his coworkers [10-12]. Simulation tasks can be accomplished within 24

  19. From micro-scale 3D simulations to macro-scale model of periodic porous media

    NASA Astrophysics Data System (ADS)

    Crevacore, Eleonora; Tosco, Tiziana; Marchisio, Daniele; Sethi, Rajandrea; Messina, Francesca

    2015-04-01

    In environmental engineering, the transport of colloidal suspensions in porous media is studied to understand the fate of potentially harmful nano-particles and to design new remediation technologies. In this perspective, averaging techniques applied to micro-scale numerical simulations are a powerful tool to extrapolate accurate macro-scale models. Choosing two simplified packing configurations of soil grains and starting from a single elementary cell (module), it is possible to take advantage of the periodicity of the structures to reduce the computation costs of full 3D simulations. Steady-state flow simulations for incompressible fluid in laminar regime are implemented. Transport simulations are based on the pore-scale advection-diffusion equation, that can be enriched introducing also the Stokes velocity (to consider the gravity effect) and the interception mechanism. Simulations are carried on a domain composed of several elementary modules, that serve as control volumes in a finite volume method for the macro-scale method. The periodicity of the medium involves the periodicity of the flow field and this will be of great importance during the up-scaling procedure, allowing relevant simplifications. Micro-scale numerical data are treated in order to compute the mean concentration (volume and area averages) and fluxes on each module. The simulation results are used to compare the micro-scale averaged equation to the integral form of the macroscopic one, making a distinction between those terms that could be computed exactly and those for which a closure in needed. Of particular interest it is the investigation of the origin of macro-scale terms such as the dispersion and tortuosity, trying to describe them with micro-scale known quantities. Traditionally, to study the colloidal transport many simplifications are introduced, such those concerning ultra-simplified geometry that usually account for a single collector. Gradual removal of such hypothesis leads to a

  20. Three-dimensional parallel UNIPIC-3D code for simulations of high-power microwave devices

    NASA Astrophysics Data System (ADS)

    Wang, Jianguo; Chen, Zaigao; Wang, Yue; Zhang, Dianhui; Liu, Chunliang; Li, Yongdong; Wang, Hongguang; Qiao, Hailiang; Fu, Meiyan; Yuan, Yuan

    2010-07-01

    This paper introduces a self-developed, three-dimensional parallel fully electromagnetic particle simulation code UNIPIC-3D. In this code, the electromagnetic fields are updated using the second-order, finite-difference time-domain method, and the particles are moved using the relativistic Newton-Lorentz force equation. The electromagnetic field and particles are coupled through the current term in Maxwell's equations. Two numerical examples are used to verify the algorithms adopted in this code, numerical results agree well with theoretical ones. This code can be used to simulate the high-power microwave (HPM) devices, such as the relativistic backward wave oscillator, coaxial vircator, and magnetically insulated line oscillator, etc. UNIPIC-3D is written in the object-oriented C++ language and can be run on a variety of platforms including WINDOWS, LINUX, and UNIX. Users can use the graphical user's interface to create the complex geometric structures of the simulated HPM devices, which can be automatically meshed by UNIPIC-3D code. This code has a powerful postprocessor which can display the electric field, magnetic field, current, voltage, power, spectrum, momentum of particles, etc. For the sake of comparison, the results computed by using the two-and-a-half-dimensional UNIPIC code are also provided for the same parameters of HPM devices, the numerical results computed from these two codes agree well with each other.

  1. Simulation of a true-triaxial deformation test on anisotropic gneiss using FLAC3D

    NASA Astrophysics Data System (ADS)

    Ye, Shenghua; Sehizadeh, Mehdi; Nasseri, Mohammad; Young, Paul

    2016-04-01

    A series of true-triaxial experiments have been carried out at the University of Toronto's Rock Fracture Dynamics Laboratory. Isotropic pegmatite and gneiss have been used to systematically study the effect of anisotropy on the strength, behaviour and seismic response. Samples were loaded under true-triaxial stress conditions and subjected to complex loading and unloading histories associated with rock deformation around underground openings. The results show expected patterns of weakness from preferentially oriented samples and highlight the importance of unloading history under true-triaxial conditions on the deformation and seismic response of the samples. These tests have been used to validate a synthetic simulation using the Itasca FLAC3D numerical code. The paper describes the FLAC3D simulations of the complex true-triaxial loading and unloading history of the different anisotropic samples. Various parameters were created to describe the physico-mechanical properties of the synthetic rock samples. Foliation planes of preferential orientations with respect to the primary loading direction were added to the synthetic rock samples to reflect the anisotropy of the gneiss. These synthetic rock samples were subjected to the same loading and unloading paths as the real rock samples, and failed in the same mechanism as what was observed from the experiments, and thus it proved the validity of this numerical simulation with FLAC3D.

  2. 3-D Particl-in-Cell Simulations of Transport Driven Currents

    NASA Astrophysics Data System (ADS)

    Tsung, F. S.; Dawson, J. M.

    1997-11-01

    In the advanced tokamak regime, transport phenomena can account for a signficant fraction of the toroidal current, possibly over that driven directly by the ohmic heating electric fields. Although bootstrap theory accounts for contributions of the collisional modification of banana orbits on the toroidal currents, the corresponding transport theory does not accurately predict the transport of particles and heat in present-day tokamak experiments. Furthermore, in our previous simulations in 21/2-D, currents were spontaneously generated in both the cylindrical and the toroidal geometries, contrary to neoclassical predictions. In these calculations, it was believed that the driving mechanism is the preferential loss of particles whose initial velocity is opposite to that of the plasma current. Because the preferential loss mechanism assumes the conservation of toroidal angular momentum, we have extended these simulations to three dimensions to study the effects of toroidal assymetries. A parallel, 3-D electromagnetic PIC code running on the IBM SP, with a localized field-solver has been developed to investigate the effects of perturbations parallel to the field lines, and direct comparisons has been made between the 21/2-D and 3-D simulations, and we have found good agreements between the 2 1/2-D calculations and the 3-D results. We will present these results at the meeting.

  3. Modeling and simulating the adaptive electrical properties of stochastic polymeric 3D networks

    NASA Astrophysics Data System (ADS)

    Sigala, R.; Smerieri, A.; Schüz, A.; Camorani, P.; Erokhin, V.

    2013-10-01

    Memristors are passive two-terminal circuit elements that combine resistance and memory. Although in theory memristors are a very promising approach to fabricate hardware with adaptive properties, there are only very few implementations able to show their basic properties. We recently developed stochastic polymeric matrices with a functionality that evidences the formation of self-assembled three-dimensional (3D) networks of memristors. We demonstrated that those networks show the typical hysteretic behavior observed in the ‘one input-one output’ memristive configuration. Interestingly, using different protocols to electrically stimulate the networks, we also observed that their adaptive properties are similar to those present in the nervous system. Here, we model and simulate the electrical properties of these self-assembled polymeric networks of memristors, the topology of which is defined stochastically. First, we show that the model recreates the hysteretic behavior observed in the real experiments. Second, we demonstrate that the networks modeled indeed have a 3D instead of a planar functionality. Finally, we show that the adaptive properties of the networks depend on their connectivity pattern. Our model was able to replicate fundamental qualitative behavior of the real organic 3D memristor networks; yet, through the simulations, we also explored other interesting properties, such as the relation between connectivity patterns and adaptive properties. Our model and simulations represent an interesting tool to understand the very complex behavior of self-assembled memristor networks, which can finally help to predict and formulate hypotheses for future experiments.

  4. Simulation and testing of a multichannel system for 3D sound localization

    NASA Astrophysics Data System (ADS)

    Matthews, Edward Albert

    Three-dimensional (3D) audio involves the ability to localize sound anywhere in a three-dimensional space. 3D audio can be used to provide the listener with the perception of moving sounds and can provide a realistic listening experience for applications such as gaming, video conferencing, movies, and concerts. The purpose of this research is to simulate and test 3D audio by incorporating auditory localization techniques in a multi-channel speaker system. The objective is to develop an algorithm that can place an audio event in a desired location by calculating and controlling the gain factors of each speaker. A MATLAB simulation displays the location of the speakers and perceived sound, which is verified through experimentation. The scenario in which the listener is not equidistant from each of the speakers is also investigated and simulated. This research is envisioned to lead to a better understanding of human localization of sound, and will contribute to a more realistic listening experience.

  5. 3D flow past transonic turbine cascade SE 1050 — Experiment and numerical simulations

    NASA Astrophysics Data System (ADS)

    Šimurda, D.; Fürst, J.; Luxa, M.

    2013-08-01

    This paper is concerned with experimental and numerical research on 3D flow past prismatic turbine cascade SE1050 (known in QNET network as open test case SE1050). The primary goal was to assess the influence of the inlet velocity profile on the flow structures in the interblade channel and on the flow field parameters at the cascade exit and to compare these findings to results of numerical simulations. Investigations of 3D flow past the cascade with non-uniform inlet velocity profile were carried out both experimentally and numerically at subsonic ( M 2is = 0.8) and at transonic ( M 2is = 1.2) regime at design angle of incidence. Experimental data was obtained using a traversing device with a five-hole conical probe. Numerically, the 3D flow was simulated by open source code OpenFOAM and in-house code. Analyses of experimental data and CFD simulations have revealed the development of distinctive vortex structures resulting from non-uniform inlet velocity profile. Origin of these structures results in increased loss of kinetic energy and spanwise shift of kinetic energy loss coefficient distribution. Differences found between the subsonic and the transonic case confirm earlier findings available in the literature. Results of CFD and experiments agree reasonably well.

  6. 3D Numerical Simulation on the Sloshing Waves Excited by the Seismic Shacking

    NASA Astrophysics Data System (ADS)

    Zhang, Lin; Wu, Tso-Ren

    2016-04-01

    In the event of 2015 Nepal earthquake, a video clip broadcasted worldwide showed a violent water spilling in a hotel swimming pool. This sloshing phenomenon indicates a potential water loss in the sensitive facilities, e.g. the spent fuel pools in nuclear power plant, has to be taken into account carefully under the consideration of seismic-induced ground acceleration. In the previous studies, the simulation of sloshing mainly focused on the pressure force on the structure by using a simplified Spring-Mass Method developed in the field of solid mechanics. However, restricted by the assumptions of plane water surface and limited wave height, significant error will be made in evaluating the amount of water loss in the tank. In this paper, the computational fluid dynamical model, Splash3D, was adopted for studying the sloshing problem accurately. Splash3D solved 3D Navier-Stokes Equation directly with Large-Eddy Simulation (LES) turbulent closure. The Volume-of-fluid (VOF) method with piecewise linear interface calculation (PLIC) was used to track the complex breaking water surface. The time series acceleration of a design seismic was loaded to excite the water. With few restrictions from the assumptions, the accuracy of the simulation results were improved dramatically. A series model validations were conducted by compared to a 2D theoretical solution, and a 3D experimental data. Good comparisons can be seen. After the validation, we performed the simulation for considering a sloshing case in a rectangular water tank with a dimension of 12 m long, 8 m wide, 8 m deep, which contained water with 7 m in depth. The seismic movement was imported by considering time-series acceleration in three dimensions, which were about 0.5 g to 1.2 g in the horizontal directions, and 0.3 g to 1 g in the vertical direction. We focused the discussions on the kinematics of the water surface, wave breaking, velocity field, pressure field, water force on the side walls, and, most

  7. Validation of a 3D computational fluid-structure interaction model simulating flow through an elastic aperture

    PubMed Central

    Quaini, A.; Canic, S.; Glowinski, R.; Igo, S.; Hartley, C.J.; Zoghbi, W.; Little, S.

    2011-01-01

    This work presents a validation of a fluid-structure interaction computational model simulating the flow conditions in an in vitro mock heart chamber modeling mitral valve regurgitation during the ejection phase during which the trans-valvular pressure drop and valve displacement are not as large. The mock heart chamber was developed to study the use of 2D and 3D color Doppler techniques in imaging the clinically relevant complex intra-cardiac flow events associated with mitral regurgitation. Computational models are expected to play an important role in supporting, refining, and reinforcing the emerging 3D echocardiographic applications. We have developed a 3D computational fluid-structure interaction algorithm based on a semi-implicit, monolithic method, combined with an arbitrary Lagrangian-Eulerian approach to capture the fluid domain motion. The mock regurgitant mitral valve corresponding to an elastic plate with a geometric orifice, was modeled using 3D elasticity, while the blood flow was modeled using the 3D Navier-Stokes equations for an incompressible, viscous fluid. The two are coupled via the kinematic and dynamic conditions describing the two-way coupling. The pressure, the flow rate, and orifice plate displacement were measured and compared with numerical simulation results. In-line flow meter was used to measure the flow, pressure transducers were used to measure the pressure, and a Doppler method developed by one of the authors was used to measure the axial displacement of the orifice plate. The maximum recorded difference between experiment and numerical simulation for the flow rate was 4%, the pressure 3.6%, and for the orifice displacement 15%, showing excellent agreement between the two. PMID:22138194

  8. Validation of a 3D computational fluid-structure interaction model simulating flow through an elastic aperture.

    PubMed

    Quaini, A; Canic, S; Glowinski, R; Igo, S; Hartley, C J; Zoghbi, W; Little, S

    2012-01-10

    This work presents a validation of a fluid-structure interaction computational model simulating the flow conditions in an in vitro mock heart chamber modeling mitral valve regurgitation during the ejection phase during which the trans-valvular pressure drop and valve displacement are not as large. The mock heart chamber was developed to study the use of 2D and 3D color Doppler techniques in imaging the clinically relevant complex intra-cardiac flow events associated with mitral regurgitation. Computational models are expected to play an important role in supporting, refining, and reinforcing the emerging 3D echocardiographic applications. We have developed a 3D computational fluid-structure interaction algorithm based on a semi-implicit, monolithic method, combined with an arbitrary Lagrangian-Eulerian approach to capture the fluid domain motion. The mock regurgitant mitral valve corresponding to an elastic plate with a geometric orifice, was modeled using 3D elasticity, while the blood flow was modeled using the 3D Navier-Stokes equations for an incompressible, viscous fluid. The two are coupled via the kinematic and dynamic conditions describing the two-way coupling. The pressure, the flow rate, and orifice plate displacement were measured and compared with numerical simulation results. In-line flow meter was used to measure the flow, pressure transducers were used to measure the pressure, and a Doppler method developed by one of the authors was used to measure the axial displacement of the orifice plate. The maximum recorded difference between experiment and numerical simulation for the flow rate was 4%, the pressure 3.6%, and for the orifice displacement 15%, showing excellent agreement between the two. PMID:22138194

  9. Characterizing the propagation of gravity waves in 3D nonlinear simulations of solar-like stars

    NASA Astrophysics Data System (ADS)

    Alvan, L.; Strugarek, A.; Brun, A. S.; Mathis, S.; Garcia, R. A.

    2015-09-01

    Context. The revolution of helio- and asteroseismology provides access to the detailed properties of stellar interiors by studying the star's oscillation modes. Among them, gravity (g) modes are formed by constructive interferences between progressive internal gravity waves (IGWs), propagating in stellar radiative zones. Our new 3D nonlinear simulations of the interior of a solar-like star allows us to study the excitation, propagation, and dissipation of these waves. Aims: The aim of this article is to clarify our understanding of the behavior of IGWs in a 3D radiative zone and to provide a clear overview of their properties. Methods: We use a method of frequency filtering that reveals the path of individual gravity waves of different frequencies in the radiative zone. Results: We are able to identify the region of propagation of different waves in 2D and 3D, to compare them to the linear raytracing theory and to distinguish between propagative and standing waves (g-modes). We also show that the energy carried by waves is distributed in different planes in the sphere, depending on their azimuthal wave number. Conclusions: We are able to isolate individual IGWs from a complex spectrum and to study their propagation in space and time. In particular, we highlight in this paper the necessity of studying the propagation of waves in 3D spherical geometry, since the distribution of their energy is not equipartitioned in the sphere.

  10. Finite-element 3D simulation tools for high-current relativistic electron beams

    NASA Astrophysics Data System (ADS)

    Humphries, Stanley; Ekdahl, Carl

    2002-08-01

    The DARHT second-axis injector is a challenge for computer simulations. Electrons are subject to strong beam-generated forces. The fields are fully three-dimensional and accurate calculations at surfaces are critical. We describe methods applied in OmniTrak, a 3D finite-element code suite that can address DARHT and the full range of charged-particle devices. The system handles mesh generation, electrostatics, magnetostatics and self-consistent particle orbits. The MetaMesh program generates meshes of conformal hexahedrons to fit any user geometry. The code has the unique ability to create structured conformal meshes with cubic logic. Organized meshes offer advantages in speed and memory utilization in the orbit and field solutions. OmniTrak is a versatile charged-particle code that handles 3D electric and magnetic field solutions on independent meshes. The program can update both 3D field solutions from the calculated beam space-charge and current-density. We shall describe numerical methods for orbit tracking on a hexahedron mesh. Topics include: 1) identification of elements along the particle trajectory, 2) fast searches and adaptive field calculations, 3) interpolation methods to terminate orbits on material surfaces, 4) automatic particle generation on multiple emission surfaces to model space-charge-limited emission and field emission, 5) flexible Child law algorithms, 6) implementation of the dual potential model for 3D magnetostatics, and 7) assignment of charge and current from model particle orbits for self-consistent fields.

  11. Use of 3-D magnetic resonance electrical impedance tomography in detecting human cerebral stroke: a simulation study*

    PubMed Central

    Gao, Nuo; Zhu, Shan-an; He, Bin

    2005-01-01

    We have developed a new three dimensional (3-D) conductivity imaging approach and have used it to detect human brain conductivity changes corresponding to acute cerebral stroke. The proposed Magnetic Resonance Electrical Impedance Tomography (MREIT) approach is based on the J-Substitution algorithm and is expanded to imaging 3-D subject conductivity distribution changes. Computer simulation studies have been conducted to evaluate the present MREIT imaging approach. Simulations of both types of cerebral stroke, hemorrhagic stroke and ischemic stroke, were performed on a four-sphere head model. Simulation results showed that the correlation coefficient (CC) and relative error (RE) between target and estimated conductivity distributions were 0.9245±0.0068 and 8.9997%±0.0084%, for hemorrhagic stroke, and 0.6748±0.0197 and 8.8986%±0.0089%, for ischemic stroke, when the SNR (signal-to-noise radio) of added GWN (Gaussian White Noise) was 40. The convergence characteristic was also evaluated according to the changes of CC and RE with different iteration numbers. The CC increases and RE decreases monotonously with the increasing number of iterations. The present simulation results show the feasibility of the proposed 3-D MREIT approach in hemorrhagic and ischemic stroke detection and suggest that the method may become a useful alternative in clinical diagnosis of acute cerebral stroke in humans. PMID:15822161

  12. Models and simulation of 3D neuronal dendritic trees using Bayesian networks.

    PubMed

    López-Cruz, Pedro L; Bielza, Concha; Larrañaga, Pedro; Benavides-Piccione, Ruth; DeFelipe, Javier

    2011-12-01

    Neuron morphology is crucial for neuronal connectivity and brain information processing. Computational models are important tools for studying dendritic morphology and its role in brain function. We applied a class of probabilistic graphical models called Bayesian networks to generate virtual dendrites from layer III pyramidal neurons from three different regions of the neocortex of the mouse. A set of 41 morphological variables were measured from the 3D reconstructions of real dendrites and their probability distributions used in a machine learning algorithm to induce the model from the data. A simulation algorithm is also proposed to obtain new dendrites by sampling values from Bayesian networks. The main advantage of this approach is that it takes into account and automatically locates the relationships between variables in the data instead of using predefined dependencies. Therefore, the methodology can be applied to any neuronal class while at the same time exploiting class-specific properties. Also, a Bayesian network was defined for each part of the dendrite, allowing the relationships to change in the different sections and to model heterogeneous developmental factors or spatial influences. Several univariate statistical tests and a novel multivariate test based on Kullback-Leibler divergence estimation confirmed that virtual dendrites were similar to real ones. The analyses of the models showed relationships that conform to current neuroanatomical knowledge and support model correctness. At the same time, studying the relationships in the models can help to identify new interactions between variables related to dendritic morphology. PMID:21305364

  13. 3D finite element simulation of effects of deflection rate on energy absorption for TRIP steel

    NASA Astrophysics Data System (ADS)

    Hayashi, Asuka; Pham, Hang; Iwamoto, Takeshi

    2015-09-01

    Recently, with the requirement of lighter weight and more safety for a design of automobile, energy absorption capability of structural materials has become important. TRIP (Transformation-induced Plasticity) steel is expected to apply to safety members because of excellent energy absorption capability and ductility. Past studies proved that such excellent characteristics in TRIP steel are dominated by strain-induced martensitic transformation (SIMT) during plastic deformation. Because SIMT strongly depends on deformation rate and temperature, an investigation of the effects of deformation rate and temperature on energy absorption in TRIP is essential. Although energy absorption capability of material can be estimated by J-integral experimentally by using pre-cracked specimen, it is difficult to determine volume fraction of martensite and temperature rise during the crack extension. In addition, their effects on J-integral, especially at high deformation rate in experiment might be quite hard. Thus, a computational prediction needs to be performed. In this study, bending deformation behavior of pre-cracked specimen until the onset point of crack extension are predicted by 3D finite element simulation based on the transformation kinetics model proposed by Iwamoto et al. (1998). It is challenged to take effects of temperature, volume fraction of martensite and deformation rate into account. Then, the mechanism for higher energy absorption characteristic will be discussed.

  14. Large-eddy simulation of 3-D corner separation in a linear compressor cascade

    NASA Astrophysics Data System (ADS)

    Gao, Feng; Ma, Wei; Zambonini, Gherardo; Boudet, Jérôme; Ottavy, Xavier; Lu, Lipeng; Shao, Liang

    2015-08-01

    The increase of the thrust/weight ratio of aircraft engines is extremely restricted by different 3-D flow loss mechanisms. One of them is the corner separation that can form at the junction between a blade suction side and a hub or shroud. In this paper, in order to further investigate the turbulent characteristics of corner separation, large-eddy simulation (LES) is conducted on a compressor cascade configuration using NACA65 blade profiles (chord based Reynolds number: 3.82 × 105), in comparison with the previous obtained experimental data. Using the shear-improved Smagorinsky model as subgrid-scale model, the LES gives a good description of the mean aerodynamics of the corner separation, especially for the blade surface static pressure coefficient and the total pressure losses. The turbulent dynamics is then analyzed in detail, in consideration of the turbulent structures, the one-point velocity spectra, and the turbulence anisotropy. Within the recirculation region, the energy appears to concentrate around the largest turbulent eddies, with fairly isotropic characteristics. Concerning the dynamics, an aperiodic shedding of hairpin vortices seems to induce an unsteadiness of the separation envelope.

  15. Image-driven, model-based 3D abdominal motion estimation for MR-guided radiotherapy

    NASA Astrophysics Data System (ADS)

    Stemkens, Bjorn; Tijssen, Rob H. N.; de Senneville, Baudouin Denis; Lagendijk, Jan J. W.; van den Berg, Cornelis A. T.

    2016-07-01

    Respiratory motion introduces substantial uncertainties in abdominal radiotherapy for which traditionally large margins are used. The MR-Linac will open up the opportunity to acquire high resolution MR images just prior to radiation and during treatment. However, volumetric MRI time series are not able to characterize 3D tumor and organ-at-risk motion with sufficient temporal resolution. In this study we propose a method to estimate 3D deformation vector fields (DVFs) with high spatial and temporal resolution based on fast 2D imaging and a subject-specific motion model based on respiratory correlated MRI. In a pre-beam phase, a retrospectively sorted 4D-MRI is acquired, from which the motion is parameterized using a principal component analysis. This motion model is used in combination with fast 2D cine-MR images, which are acquired during radiation, to generate full field-of-view 3D DVFs with a temporal resolution of 476 ms. The geometrical accuracies of the input data (4D-MRI and 2D multi-slice acquisitions) and the fitting procedure were determined using an MR-compatible motion phantom and found to be 1.0–1.5 mm on average. The framework was tested on seven healthy volunteers for both the pancreas and the kidney. The calculated motion was independently validated using one of the 2D slices, with an average error of 1.45 mm. The calculated 3D DVFs can be used retrospectively for treatment simulations, plan evaluations, or to determine the accumulated dose for both the tumor and organs-at-risk on a subject-specific basis in MR-guided radiotherapy.

  16. Image-driven, model-based 3D abdominal motion estimation for MR-guided radiotherapy.

    PubMed

    Stemkens, Bjorn; Tijssen, Rob H N; de Senneville, Baudouin Denis; Lagendijk, Jan J W; van den Berg, Cornelis A T

    2016-07-21

    Respiratory motion introduces substantial uncertainties in abdominal radiotherapy for which traditionally large margins are used. The MR-Linac will open up the opportunity to acquire high resolution MR images just prior to radiation and during treatment. However, volumetric MRI time series are not able to characterize 3D tumor and organ-at-risk motion with sufficient temporal resolution. In this study we propose a method to estimate 3D deformation vector fields (DVFs) with high spatial and temporal resolution based on fast 2D imaging and a subject-specific motion model based on respiratory correlated MRI. In a pre-beam phase, a retrospectively sorted 4D-MRI is acquired, from which the motion is parameterized using a principal component analysis. This motion model is used in combination with fast 2D cine-MR images, which are acquired during radiation, to generate full field-of-view 3D DVFs with a temporal resolution of 476 ms. The geometrical accuracies of the input data (4D-MRI and 2D multi-slice acquisitions) and the fitting procedure were determined using an MR-compatible motion phantom and found to be 1.0-1.5 mm on average. The framework was tested on seven healthy volunteers for both the pancreas and the kidney. The calculated motion was independently validated using one of the 2D slices, with an average error of 1.45 mm. The calculated 3D DVFs can be used retrospectively for treatment simulations, plan evaluations, or to determine the accumulated dose for both the tumor and organs-at-risk on a subject-specific basis in MR-guided radiotherapy. PMID:27362636

  17. Sedimentary basin effects in Seattle, Washington: Ground-motion observations and 3D simulations

    USGS Publications Warehouse

    Frankel, Arthur; Stephenson, William; Carver, David

    2009-01-01

    Seismograms of local earthquakes recorded in Seattle exhibit surface waves in the Seattle basin and basin-edge focusing of S waves. Spectral ratios of Swaves and later arrivals at 1 Hz for stiff-soil sites in the Seattle basin show a dependence on the direction to the earthquake, with earthquakes to the south and southwest producing higher average amplification. Earthquakes to the southwest typically produce larger basin surface waves relative to S waves than earthquakes to the north and northwest, probably because of the velocity contrast across the Seattle fault along the southern margin of the Seattle basin. S to P conversions are observed for some events and are likely converted at the bottom of the Seattle basin. We model five earthquakes, including the M 6.8 Nisqually earthquake, using 3D finite-difference simulations accurate up to 1 Hz. The simulations reproduce the observed dependence of amplification on the direction to the earthquake. The simulations generally match the timing and character of basin surface waves observed for many events. The 3D simulation for the Nisqually earth-quake produces focusing of S waves along the southern margin of the Seattle basin near the area in west Seattle that experienced increased chimney damage from the earthquake, similar to the results of the higher-frequency 2D simulation reported by Stephenson et al. (2006). Waveforms from the 3D simulations show reasonable agreement with the data at low frequencies (0.2-0.4 Hz) for the Nisqually earthquake and an M 4.8 deep earthquake west of Seattle.

  18. PACS-based interface for 3D anatomical structure visualization and surgical planning

    NASA Astrophysics Data System (ADS)

    Koehl, Christophe; Soler, Luc; Marescaux, Jacques

    2002-05-01

    The interpretation of radiological image is routine but it remains a rather difficult task for physicians. It requires complex mental processes, that permit translation from 2D slices into 3D localization and volume determination of visible diseases. An easier and more extensive visualization and exploitation of medical images can be reached through the use of computer-based systems that provide real help from patient admission to post-operative followup. In this way, we have developed a 3D visualization interface linked to a PACS database that allows manipulation and interaction on virtual organs delineated from CT-scan or MRI. This software provides the 3D real-time surface rendering of anatomical structures, an accurate evaluation of volumes and distances and the improvement of radiological image analysis and exam annotation through a negatoscope tool. It also provides a tool for surgical planning allowing the positioning of an interactive laparoscopic instrument and the organ resection. The software system could revolutionize the field of computerized imaging technology. Indeed, it provides a handy and portable tool for pre-operative and intra-operative analysis of anatomy and pathology in various medical fields. This constitutes the first step of the future development of augmented reality and surgical simulation systems.

  19. Numerical Benchmark of 3D Ground Motion Simulation in the Alpine valley of Grenoble, France.

    NASA Astrophysics Data System (ADS)

    Tsuno, S.; Chaljub, E.; Cornou, C.; Bard, P.

    2006-12-01

    Thank to the use of sophisticated numerical methods and to the access to increasing computational resources, our predictions of strong ground motion become more and more realistic and need to be carefully compared. We report our effort of benchmarking numerical methods of ground motion simulation in the case of the valley of Grenoble in the French Alps. The Grenoble valley is typical of a moderate seismicity area where strong site effects occur. The benchmark consisted in computing the seismic response of the `Y'-shaped Grenoble valley to (i) two local earthquakes (Ml<=3) for which recordings were avalaible; and (ii) two local hypothetical events (Mw=6) occuring on the so-called Belledonne Border Fault (BBF) [1]. A free-style prediction was also proposed, in which participants were allowed to vary the source and/or the model parameters and were asked to provide the resulting uncertainty in their estimation of ground motion. We received a total of 18 contributions from 14 different groups; 7 of these use 3D methods, among which 3 could handle surface topography, the other half comprises predictions based upon 1D (2 contributions), 2D (4 contributions) and empirical Green's function (EGF) (3 contributions) methods. Maximal frequency analysed ranged between 2.5 Hz for 3D calculations and 40 Hz for EGF predictions. We present a detailed comparison of the different predictions using raw indicators (e.g. peak values of ground velocity and acceleration, Fourier spectra, site over reference spectral ratios, ...) as well as sophisticated misfit criteria based upon previous works [2,3]. We further discuss the variability in estimating the importance of particular effects such as non-linear rheology, or surface topography. References: [1] Thouvenot F. et al., The Belledonne Border Fault: identification of an active seismic strike-slip fault in the western Alps, Geophys. J. Int., 155 (1), p. 174-192, 2003. [2] Anderson J., Quantitative measure of the goodness-of-fit of

  20. Software Development: 3D Animations and Creating User Interfaces for Realistic Simulations

    NASA Technical Reports Server (NTRS)

    Gordillo, Orlando Enrique

    2015-01-01

    My fall 2015 semester was spent at the Lyndon B. Johnson Space Center working in the Integrated Graphics, Operations, and Analysis Laboratory (IGOAL). My first project was to create a video animation that could tell the story of OMICS. OMICS is a term being used in the field of biomedical science to describe the collective technologies that study biological systems, such as what makes up a cell and how it functions with other systems. In the IGOAL I used a large 23 inch Wacom monitor to draw storyboards, graphics, and line art animations. I used Blender as the 3D environment to sculpt, shape, cut or modify the several scenes and models for the video. A challenge creating this video was to take a term used in biomedical science and describe it in such a way that an 8th grade student can understand. I used a line art style because it would visually set the tone for what we thought was an educational style. In order to get a handle on the perspective and overall feel for the animation without overloading my workspace, I split up the 2 minute animation into several scenes. I used Blender's python scripting capabilities which allowed for the addition of plugins to add or modify tools. The scripts can also directly interact with the objects to create naturalistic patterns or movements. After collecting the rendered scenes, I used Blender's built-in video editing workspace to output the animation. My second project was to write software that emulates a physical system's interface. The interface was to simulate a boat, ROV, and winch system. Simulations are a time and cost effective way to test complicated data and provide training for operators without having to use expensive hardware. We created the virtual controls with 3-D Blender models and 2-D graphics, and then add functionality in C# using the Unity game engine. The Unity engine provides several essential behaviors of a simulator, such as the start and update functions. A framework for Unity, which was developed in

  1. Improving light propagation Monte Carlo simulations with accurate 3D modeling of skin tissue

    SciTech Connect

    Paquit, Vincent C; Price, Jeffery R; Meriaudeau, Fabrice; Tobin Jr, Kenneth William

    2008-01-01

    In this paper, we present a 3D light propagation model to simulate multispectral reflectance images of large skin surface areas. In particular, we aim to simulate more accurately the effects of various physiological properties of the skin in the case of subcutaneous vein imaging compared to existing models. Our method combines a Monte Carlo light propagation model, a realistic three-dimensional model of the skin using parametric surfaces and a vision system for data acquisition. We describe our model in detail, present results from the Monte Carlo modeling and compare our results with those obtained with a well established Monte Carlo model and with real skin reflectance images.

  2. 3D and 4D Simulations of the Dynamics of the Radiation Belts using VERB code

    NASA Astrophysics Data System (ADS)

    Shprits, Yuri; Kellerman, Adam; Drozdov, Alexander; Orlova, Ksenia

    2015-04-01

    Modeling and understanding of ring current and higher energy radiation belts has been a grand challenge since the beginning of the space age. In this study we show long term simulations with a 3D VERB code of modeling the radiation belts with boundary conditions derived from observations around geosynchronous orbit. We also present 4D VERB simulations that include convective transport, radial diffusion, pitch angle scattering and local acceleration. We show that while lower energy radial transport is dominated by the convection and higher energy transport is dominated by the diffusive radial transport. We also show there exists an intermediate range of energies for electrons for which both processes work simultaneously.

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