3D unstructured-mesh radiation transport codes
Morel, J.
1997-12-31
Three unstructured-mesh radiation transport codes are currently being developed at Los Alamos National Laboratory. The first code is ATTILA, which uses an unstructured tetrahedral mesh in conjunction with standard Sn (discrete-ordinates) angular discretization, standard multigroup energy discretization, and linear-discontinuous spatial differencing. ATTILA solves the standard first-order form of the transport equation using source iteration in conjunction with diffusion-synthetic acceleration of the within-group source iterations. DANTE is designed to run primarily on workstations. The second code is DANTE, which uses a hybrid finite-element mesh consisting of arbitrary combinations of hexahedra, wedges, pyramids, and tetrahedra. DANTE solves several second-order self-adjoint forms of the transport equation including the even-parity equation, the odd-parity equation, and a new equation called the self-adjoint angular flux equation. DANTE also offers three angular discretization options: $S{_}n$ (discrete-ordinates), $P{_}n$ (spherical harmonics), and $SP{_}n$ (simplified spherical harmonics). DANTE is designed to run primarily on massively parallel message-passing machines, such as the ASCI-Blue machines at LANL and LLNL. The third code is PERICLES, which uses the same hybrid finite-element mesh as DANTE, but solves the standard first-order form of the transport equation rather than a second-order self-adjoint form. DANTE uses a standard $S{_}n$ discretization in angle in conjunction with trilinear-discontinuous spatial differencing, and diffusion-synthetic acceleration of the within-group source iterations. PERICLES was initially designed to run on workstations, but a version for massively parallel message-passing machines will be built. The three codes will be described in detail and computational results will be presented.
3D unstructured mesh discontinuous finite element hydro
Prasad, M.K.; Kershaw, D.S.; Shaw, M.J.
1995-07-01
The authors present detailed features of the ICF3D hydrodynamics code used for inertial fusion simulations. This code is intended to be a state-of-the-art upgrade of the well-known fluid code, LASNEX. ICF3D employs discontinuous finite elements on a discrete unstructured mesh consisting of a variety of 3D polyhedra including tetrahedra, prisms, and hexahedra. The authors discussed details of how the ROE-averaged second-order convection was applied on the discrete elements, and how the C++ coding interface has helped to simplify implementing the many physics and numerics modules within the code package. The author emphasized the virtues of object-oriented design in large scale projects such as ICF3D.
The 2D and 3D hypersonic flows with unstructured meshes
NASA Technical Reports Server (NTRS)
Thareja, Rajiv
1993-01-01
Viewgraphs on 2D and 3D hypersonic flows with unstructured meshes are presented. Topics covered include: mesh generation, mesh refinement, shock-shock interaction, velocity contours, mesh movement, vehicle bottom surface, and adapted meshes.
A 3-D upwind Euler solver for unstructured meshes
NASA Technical Reports Server (NTRS)
Barth, Timothy J.
1991-01-01
A three-dimensional finite-volume upwind Euler solver is developed for unstructured meshes. The finite-volume scheme solves for solution variables at vertices of the mesh and satisfies the integral conservation law on nonoverlapping polyhedral control volumes surrounding vertices of the mesh. The schene achieves improved solution accuracy by assuming a piecewise linear variation of the solution in each control volume. This improved spatial accuracy hinges heavily upon the calculation of the solution gradient in each control volume given pointwise values of the solution at vertices of the mesh. Several algorithms are discussed for obtaining these gradients. Details concerning implementation procedures and data structures are discussed. Sample calculations for inviscid Euler flow about isolated aircraft wings at subsonic and transonic speeds are compared with established Euler solvers as well as experiment.
3D unstructured mesh ALE hydrodynamics with the upwind discontinuous galerkin method
Kershaw, D S; Milovich, J L; Prasad, M K; Shaw, M J; Shestakov, A I
1999-05-07
The authors describe a numerical scheme to solve 3D Arbitrary Lagrangian-Eulerian (ALE) hydrodynamics on an unstructured mesh using a discontinuous Galerkin method (DGM) and an explicit Runge-Kutta time discretization. Upwinding is achieved through Roe's linearized Riemann solver with the Harten-Hyman entropy fix. For stabilization, a 3D quadratic programming generalization of van Leer's 1D minmod slope limiter is used along with a Lapidus type artificial viscosity. This DGM scheme has been tested on a variety of hydrodynamic test problems and appears to be robust making it the basis for the integrated 3D inertial confinement fusion modeling code (ICF3D). For efficient code development, they use C++ object oriented programming to easily separate the complexities of an unstructured mesh from the basic physics modules. ICF3D is fully parallelized using domain decomposition and the MPI message passing library. It is fully portable. It runs on uniprocessor workstations and massively parallel platforms with distributed and shared memory.
Refining 3D Earth models by unifying geological and geophysical information on unstructured meshes
NASA Astrophysics Data System (ADS)
Lelièvre, P. G.; Carter-McAuslan, A.; Tycholiz, C.; Farquharson, C. G.; Hurich, C. A.
2012-04-01
Earth models used for mineral exploration or other subsurface investigations should be consistent with all available geological and geophysical information. Geophysical inversion provides the means to integrate geological information, geophysical survey data, and physical property measurements taken on rock samples. Incorporation of geological information into inversions is always an iterative process. One begins with the geologists' best guess about the Earth (i.e. the geological model) and the models recovered from geophysical inversion may indicate that the geological model should be changed slightly prior to the next iteration of the procedure. In this way, geological and geophysical data can be combined through inversion and we can move towards the creation of a common Earth model consistent with all the available data. As more information is incorporated, the inherent non-uniqueness of the inverse problem is reduced, yielding a higher potential to resolve deeper features that are less well-constrained by the geophysical data alone. Geological ore deposit models are commonly created during delineation drilling. The accuracy of these models is crucial when used to determine if a deposit is economic. 3D geological Earth models typically comprise wireframe surfaces that represent the geological contacts between different rock units. The contacts may be known at points from down-hole intersections and surface mapping, and can be interpolated between boreholes and extrapolated outwards. Contacts may also be interpreted from seismic traces. Wireframe surfaces, comprising tessellated triangular facets, are sufficiently flexible to allow the representation of arbitrarily complicated geological structures. These surfaces can be honoured exactly within fully unstructured 3D volumetric tetrahedral meshes. In contrast, geophysical forward modelling and inversion algorithms typically work with rectilinear meshes when parameterizing the subsurface because this simplifies
Large-Scale Parallel Unstructured Mesh Computations for 3D High-Lift Analysis
NASA Technical Reports Server (NTRS)
Mavriplis, D. J.; Pirzadeh, S.
1999-01-01
A complete "geometry to drag-polar" analysis capability for three-dimensional high-lift configurations is described. The approach is based on the use of unstructured meshes in order to enable rapid turnaround for complicated geometries which arise in high-lift con gurations. Special attention is devoted to creating a capability for enabling analyses on highly resolved grids. Unstructured meshes of several million vertices are initially generated on a work-station, and subsequently refined on a supercomputer. The flow is solved on these refined meshes on large parallel computers using an unstructured agglomeration multigrid algorithm. Good prediction of lift and drag throughout the range of incidences is demonstrated on a transport take-off configuration using up to 24.7 million grid points. The feasibility of using this approach in a production environment on existing parallel machines is demonstrated, as well as the scalability of the solver on machines using up to 1450 processors.
Large-scale Parallel Unstructured Mesh Computations for 3D High-lift Analysis
NASA Technical Reports Server (NTRS)
Mavriplis, Dimitri J.; Pirzadeh, S.
1999-01-01
A complete "geometry to drag-polar" analysis capability for the three-dimensional high-lift configurations is described. The approach is based on the use of unstructured meshes in order to enable rapid turnaround for complicated geometries that arise in high-lift configurations. Special attention is devoted to creating a capability for enabling analyses on highly resolved grids. Unstructured meshes of several million vertices are initially generated on a work-station, and subsequently refined on a supercomputer. The flow is solved on these refined meshes on large parallel computers using an unstructured agglomeration multigrid algorithm. Good prediction of lift and drag throughout the range of incidences is demonstrated on a transport take-off configuration using up to 24.7 million grid points. The feasibility of using this approach in a production environment on existing parallel machines is demonstrated, as well as the scalability of the solver on machines using up to 1450 processors.
Large-Scale Parallel Unstructured Mesh Computations for 3D High-Lift Analysis
NASA Technical Reports Server (NTRS)
Mavriplis, D. J.; Pirzadeh, S.
1999-01-01
A complete "geometry to drag-polar" analysis capability for three-dimensional high-lift configurations is described. The approach is based on the use of unstructured meshes in order to enable rapid turnaround for complicated geometries which arise in high-lift configurations. Special attention is devoted to creating a capability for enabling analyses on highly resolved grids. Unstructured meshes of several million vertices are initially generated on a work-station, and subsequently refined on a supercomputer. The flow is solved on these refined meshes on large parallel computers using an unstructured agglomeration multigrid algorithm. Good prediction of lift and drag throughout the range of incidences is demonstrated on a transport take-off configuration using up to 24.7 million grid points. The feasibility of using this approach in a production environment on existing parallel machines is demonstrated, as well as the scalability of the solver on machines using up to 1450 processors.
NASA Astrophysics Data System (ADS)
Gansen, A.; Hachemi, M. El; Belouettar, S.; Hassan, O.; Morgan, K.
2016-09-01
The standard Yee algorithm is widely used in computational electromagnetics because of its simplicity and divergence free nature. A generalization of the classical Yee scheme to 3D unstructured meshes is adopted, based on the use of a Delaunay primal mesh and its high quality Voronoi dual. This allows the problem of accuracy losses, which are normally associated with the use of the standard Yee scheme and a staircased representation of curved material interfaces, to be circumvented. The 3D dual mesh leapfrog-scheme which is presented has the ability to model both electric and magnetic anisotropic lossy materials. This approach enables the modelling of problems, of current practical interest, involving structured composites and metamaterials.
MHD simulations on an unstructured mesh
Strauss, H.R.; Park, W.; Belova, E.; Fu, G.Y.; Longcope, D.W.; Sugiyama, L.E.
1998-12-31
Two reasons for using an unstructured computational mesh are adaptivity, and alignment with arbitrarily shaped boundaries. Two codes which use finite element discretization on an unstructured mesh are described. FEM3D solves 2D and 3D RMHD using an adaptive grid. MH3D++, which incorporates methods of FEM3D into the MH3D generalized MHD code, can be used with shaped boundaries, which might be 3D.
NASA Astrophysics Data System (ADS)
Cai, Hongzhu; Hu, Xiangyun; Li, Jianhui; Endo, Masashi; Xiong, Bin
2017-02-01
We solve the 3D controlled-source electromagnetic (CSEM) problem using the edge-based finite element method. The modeling domain is discretized using unstructured tetrahedral mesh. We adopt the total field formulation for the quasi-static variant of Maxwell's equation and the computation cost to calculate the primary field can be saved. We adopt a new boundary condition which approximate the total field on the boundary by the primary field corresponding to the layered earth approximation of the complicated conductivity model. The primary field on the modeling boundary is calculated using fast Hankel transform. By using this new type of boundary condition, the computation cost can be reduced significantly and the modeling accuracy can be improved. We consider that the conductivity can be anisotropic. We solve the finite element system of equations using a parallelized multifrontal solver which works efficiently for multiple source and large scale electromagnetic modeling.
NASA Astrophysics Data System (ADS)
Fang, F.; Zhang, T.; Pavlidis, D.; Pain, C. C.; Buchan, A. G.; Navon, I. M.
2014-10-01
A novel reduced order model (ROM) based on proper orthogonal decomposition (POD) has been developed for a finite-element (FE) adaptive mesh air pollution model. A quadratic expansion of the non-linear terms is employed to ensure the method remained efficient. This is the first time such an approach has been applied to air pollution LES turbulent simulation through three dimensional landscapes. The novelty of this work also includes POD's application within a FE-LES turbulence model that uses adaptive resolution. The accuracy of the reduced order model is assessed and validated for a range of 2D and 3D urban street canyon flow problems. By comparing the POD solutions against the fine detail solutions obtained from the full FE model it is shown that the accuracy is maintained, where fine details of the air flows are captured, whilst the computational requirements are reduced. In the examples presented below the size of the reduced order models is reduced by factors up to 2400 in comparison to the full FE model while the CPU time is reduced by up to 98% of that required by the full model.
Multiphase Advection and Radiation Diffusion with Material Interfaces on Unstructured Meshes
Anninos, P
2002-10-03
A collection of numerical methods are presented for the advection or remapping of material properties on unstructured and staggered polyhedral meshes in arbitrary Lagrange-Eulerian calculations. The methods include several new procedures to track and capture sharp interface boundaries, and to partition radiation energy into multi-material thermal states. The latter is useful for extending and applying consistently single material radiation diffusion solvers to multi-material problems.
Multigrid techniques for unstructured meshes
NASA Technical Reports Server (NTRS)
Mavriplis, D. J.
1995-01-01
An overview of current multigrid techniques for unstructured meshes is given. The basic principles of the multigrid approach are first outlined. Application of these principles to unstructured mesh problems is then described, illustrating various different approaches, and giving examples of practical applications. Advanced multigrid topics, such as the use of algebraic multigrid methods, and the combination of multigrid techniques with adaptive meshing strategies are dealt with in subsequent sections. These represent current areas of research, and the unresolved issues are discussed. The presentation is organized in an educational manner, for readers familiar with computational fluid dynamics, wishing to learn more about current unstructured mesh techniques.
Unstructured mesh generation and adaptivity
NASA Technical Reports Server (NTRS)
Mavriplis, D. J.
1995-01-01
An overview of current unstructured mesh generation and adaptivity techniques is given. Basic building blocks taken from the field of computational geometry are first described. Various practical mesh generation techniques based on these algorithms are then constructed and illustrated with examples. Issues of adaptive meshing and stretched mesh generation for anisotropic problems are treated in subsequent sections. The presentation is organized in an education manner, for readers familiar with computational fluid dynamics, wishing to learn more about current unstructured mesh techniques.
The Tera Multithreaded Architecture and Unstructured Meshes
NASA Technical Reports Server (NTRS)
Bokhari, Shahid H.; Mavriplis, Dimitri J.
1998-01-01
The Tera Multithreaded Architecture (MTA) is a new parallel supercomputer currently being installed at San Diego Supercomputing Center (SDSC). This machine has an architecture quite different from contemporary parallel machines. The computational processor is a custom design and the machine uses hardware to support very fine grained multithreading. The main memory is shared, hardware randomized and flat. These features make the machine highly suited to the execution of unstructured mesh problems, which are difficult to parallelize on other architectures. We report the results of a study carried out during July-August 1998 to evaluate the execution of EUL3D, a code that solves the Euler equations on an unstructured mesh, on the 2 processor Tera MTA at SDSC. Our investigation shows that parallelization of an unstructured code is extremely easy on the Tera. We were able to get an existing parallel code (designed for a shared memory machine), running on the Tera by changing only the compiler directives. Furthermore, a serial version of this code was compiled to run in parallel on the Tera by judicious use of directives to invoke the "full/empty" tag bits of the machine to obtain synchronization. This version achieves 212 and 406 Mflop/s on one and two processors respectively, and requires no attention to partitioning or placement of data issues that would be of paramount importance in other parallel architectures.
Toward An Unstructured Mesh Database
NASA Astrophysics Data System (ADS)
Rezaei Mahdiraji, Alireza; Baumann, Peter Peter
2014-05-01
Unstructured meshes are used in several application domains such as earth sciences (e.g., seismology), medicine, oceanography, cli- mate modeling, GIS as approximate representations of physical objects. Meshes subdivide a domain into smaller geometric elements (called cells) which are glued together by incidence relationships. The subdivision of a domain allows computational manipulation of complicated physical structures. For instance, seismologists model earthquakes using elastic wave propagation solvers on hexahedral meshes. The hexahedral con- tains several hundred millions of grid points and millions of hexahedral cells. Each vertex node in the hexahedrals stores a multitude of data fields. To run simulation on such meshes, one needs to iterate over all the cells, iterate over incident cells to a given cell, retrieve coordinates of cells, assign data values to cells, etc. Although meshes are used in many application domains, to the best of our knowledge there is no database vendor that support unstructured mesh features. Currently, the main tool for querying and manipulating unstructured meshes are mesh libraries, e.g., CGAL and GRAL. Mesh li- braries are dedicated libraries which includes mesh algorithms and can be run on mesh representations. The libraries do not scale with dataset size, do not have declarative query language, and need deep C++ knowledge for query implementations. Furthermore, due to high coupling between the implementations and input file structure, the implementations are less reusable and costly to maintain. A dedicated mesh database offers the following advantages: 1) declarative querying, 2) ease of maintenance, 3) hiding mesh storage structure from applications, and 4) transparent query optimization. To design a mesh database, the first challenge is to define a suitable generic data model for unstructured meshes. We proposed ImG-Complexes data model as a generic topological mesh data model which extends incidence graph model to multi
Unstructured mesh algorithms for aerodynamic calculations
NASA Technical Reports Server (NTRS)
Mavriplis, D. J.
1992-01-01
The use of unstructured mesh techniques for solving complex aerodynamic flows is discussed. The principle advantages of unstructured mesh strategies, as they relate to complex geometries, adaptive meshing capabilities, and parallel processing are emphasized. The various aspects required for the efficient and accurate solution of aerodynamic flows are addressed. These include mesh generation, mesh adaptivity, solution algorithms, convergence acceleration, and turbulence modeling. Computations of viscous turbulent two-dimensional flows and inviscid three-dimensional flows about complex configurations are demonstrated. Remaining obstacles and directions for future research are also outlined.
Verification of Unstructured Mesh Capabilities in MCNP6 for Reactor Physics Problems
Burke, Timothy P.; Martz, Roger L.; Kiedrowski, Brian C.; Martin, William R.
2012-08-22
New unstructured mesh capabilities in MCNP6 (developmental version during summer 2012) show potential for conducting multi-physics analyses by coupling MCNP to a finite element solver such as Abaqus/CAE[2]. Before these new capabilities can be utilized, the ability of MCNP to accurately estimate eigenvalues and pin powers using an unstructured mesh must first be verified. Previous work to verify the unstructured mesh capabilities in MCNP was accomplished using the Godiva sphere [1], and this work attempts to build on that. To accomplish this, a criticality benchmark and a fuel assembly benchmark were used for calculations in MCNP using both the Constructive Solid Geometry (CSG) native to MCNP and the unstructured mesh geometry generated using Abaqus/CAE. The Big Ten criticality benchmark [3] was modeled due to its geometry being similar to that of a reactor fuel pin. The C5G7 3-D Mixed Oxide (MOX) Fuel Assembly Benchmark [4] was modeled to test the unstructured mesh capabilities on a reactor-type problem.
On Convergence Acceleration Techniques for Unstructured Meshes
NASA Technical Reports Server (NTRS)
Mavriplis, Dimitri J.
1998-01-01
A discussion of convergence acceleration techniques as they relate to computational fluid dynamics problems on unstructured meshes is given. Rather than providing a detailed description of particular methods, the various different building blocks of current solution techniques are discussed and examples of solution strategies using one or several of these ideas are given. Issues relating to unstructured grid CFD problems are given additional consideration, including suitability of algorithms to current hardware trends, memory and cpu tradeoffs, treatment of non-linearities, and the development of efficient strategies for handling anisotropy-induced stiffness. The outlook for future potential improvements is also discussed.
Multislope MUSCL method for general unstructured meshes
NASA Astrophysics Data System (ADS)
Le Touze, C.; Murrone, A.; Guillard, H.
2015-03-01
The multislope concept has been recently introduced in the literature to deal with MUSCL reconstructions on triangular and tetrahedral unstructured meshes in the finite volume cell-centered context. Dedicated scalar slopes are used to compute the interpolations on each face of a given element, in opposition to the monoslope methods in which a unique limited gradient is used. The multislope approach reveals less expensive and potentially more accurate than the classical gradient techniques. Besides, it may also help the robustness when dealing with hyperbolic systems involving complex solutions, with large discontinuities and high density ratios. However some important limitations on the mesh topology still have to be overcome with the initial multislope formalism. In this paper, a generalized multislope MUSCL method is introduced for cell-centered finite volume discretizations. The method is freed from constraints on the mesh topology, thereby operating on completely general unstructured meshes. Moreover optimal second-order accuracy is reached at the faces centroids. The scheme can be written with nonnegative coefficients, which makes it L∞-stable. Special attention has also been paid to equip the reconstruction procedure with well-adapted dedicated limiters, potentially CFL-dependent. Numerical tests are provided to prove the ability of the method to deal with completely general meshes, while exhibiting second-order accuracy.
Constrained and joint inversion on unstructured meshes
NASA Astrophysics Data System (ADS)
Doetsch, J.; Jordi, C.; Rieckh, V.; Guenther, T.; Schmelzbach, C.
2015-12-01
Unstructured meshes allow for inclusion of arbitrary surface topography, complex acquisition geometry and undulating geological interfaces in the inversion of geophysical data. This flexibility opens new opportunities for coupling different geophysical and hydrological data sets in constrained and joint inversions. For example, incorporating geological interfaces that have been derived from high-resolution geophysical data (e.g., ground penetrating radar) can add geological constraints to inversions of electrical resistivity data. These constraints can be critical for a hydrogeological interpretation of the inversion results. For time-lapse inversions of geophysical data, constraints can be derived from hydrological point measurements in boreholes, but it is difficult to include these hard constraints in the inversion of electrical resistivity monitoring data. Especially mesh density and the regularization footprint around the hydrological point measurements are important for an improved inversion compared to the unconstrained case. With the help of synthetic and field examples, we analyze how regularization and coupling operators should be chosen for time-lapse inversions constrained by point measurements and for joint inversions of geophysical data in order to take full advantage of the flexibility of unstructured meshes. For the case of constraining to point measurements, it is important to choose a regularization operator that extends beyond the neighboring cells and the uncertainty in the point measurements needs to be accounted for. For joint inversion, the choice of the regularization depends on the expected subsurface heterogeneity and the cell size of the parameter mesh.
Hypersonic Flow Computations on Unstructured Meshes
NASA Technical Reports Server (NTRS)
Bibb, K. L.; Riley, C. J.; Peraire, J.
1997-01-01
A method for computing inviscid hypersonic flow over complex configurations using unstructured meshes is presented. The unstructured grid solver uses an edge{based finite{volume formulation. Fluxes are computed using a flux vector splitting scheme that is capable of representing constant enthalpy solutions. Second{order accuracy in smooth flow regions is obtained by linearly reconstructing the solution, and stability near discontinuities is maintained by locally forcing the scheme to reduce to first-order accuracy. The implementation of the algorithm to parallel computers is described. Computations using the proposed method are presented for a sphere-cone configuration at Mach numbers of 5.25 and 10.6, and a complex hypersonic re-entry vehicle at Mach numbers of 4.5 and 9.8. Results are compared to experimental data and computations made with established structured grid methods. The use of the solver as a screening tool for rapid aerodynamic assessment of proposed vehicles is described.
Soundproof simulations of stratospheric gravity waves on unstructured meshes
NASA Astrophysics Data System (ADS)
Smolarkiewicz, P.; Szmelter, J.
2012-04-01
An edge-based unstructured-mesh semi-implicit model is presented that integrates nonhydrostatic soundproof equations, inclusive of anelastic and pseudo-incompressible systems of partial differential equations. The model numerics employ nonoscillatory forward-in-time MPDATA methods [Smolarkiewicz, 2006, Int. J. Numer. Meth. Fl., 50, 1123-1144] using finite-volume spatial discretization and unstructured meshes with arbitrarily shaped cells. Implicit treatment of gravity waves benefits both accuracy and stability of the model. The unstructured-mesh solutions are compared to equivalent structured-grid results for intricate, multiscale internal-wave phenomenon of a non-Boussinesq amplification and breaking of deep stratospheric gravity waves. The departures of the anelastic and pseudo-incompressible results are quantified in reference to a recent asymptotic theory [Achatz et al., 2010, J. Fluid Mech., 663, 120-147].
Robust and efficient overset grid assembly for partitioned unstructured meshes
NASA Astrophysics Data System (ADS)
Roget, Beatrice; Sitaraman, Jayanarayanan
2014-03-01
This paper presents a method to perform efficient and automated Overset Grid Assembly (OGA) on a system of overlapping unstructured meshes in a parallel computing environment where all meshes are partitioned into multiple mesh-blocks and processed on multiple cores. The main task of the overset grid assembler is to identify, in parallel, among all points in the overlapping mesh system, at which points the flow solution should be computed (field points), interpolated (receptor points), or ignored (hole points). Point containment search or donor search, an algorithm to efficiently determine the cell that contains a given point, is the core procedure necessary for accomplishing this task. Donor search is particularly challenging for partitioned unstructured meshes because of the complex irregular boundaries that are often created during partitioning.
Anninos, P
2002-02-11
Several advection algorithms are presented within the remap framework for unstructured mesh ALE codes. The methods discussed include a generic advection scheme based on a finite volume approach, and three groups of algorithms for the treatment of material boundary interfaces. The interface capturing algorithms belong to the Volume of Fluid (VoF) class of methods to approximate material interfaces from the local fractional volume of fluid distribution in arbitrary unstructured polyhedral meshes appropriate for the Kull code. Also presented are several schemes for extending single material radiation diffusion solvers to account for multi-material interfaces.
Unstructured mesh quality assessment and upwind Euler solution algorithm validation
NASA Astrophysics Data System (ADS)
Woodard, Paul R.; Batina, John T.; Yang, Henry T. Y.
1994-05-01
Quality assessment procedures are described for two and three dimensional unstructured meshes. The procedures include measurement of minimum angles, element aspect ratios, stretching, and element skewness. Meshes about the ONERA M6 wing and the Boeing 747 transport configuration are generated using an advancing front method grid generation package of programs. Solutions of the Euler equations for these meshes are obtained at low angle of attack, transonic conditions. Results for these cases, obtained as part of a validation study, investigate accuracy of an implicit upwind Euler solution algorithm.
Reactor physics verification of the MCNP6 unstructured mesh capability
Burke, T. P.; Kiedrowski, B. C.; Martz, R. L.; Martin, W. R.
2013-07-01
The Monte Carlo software package MCNP6 has the ability to transport particles on unstructured meshes generated from the Computed-Aided Engineering software Abaqus. Verification is performed using benchmarks with features relevant to reactor physics - Big Ten and the C5G7 computational benchmark. Various meshing strategies are tested and results are compared to reference solutions. Computational performance results are also given. The conclusions show MCNP6 is capable of producing accurate calculations for reactor physics geometries and the computational requirements for small lattice benchmarks are reasonable on modern computing platforms. (authors)
AN ALGORITHM FOR PARALLEL SN SWEEPS ON UNSTRUCTURED MESHES
S. D. PAUTZ
2000-12-01
We develop a new algorithm for performing parallel S{sub n} sweeps on unstructured meshes. The algorithm uses a low-complexity list ordering heuristic to determine a sweep ordering on any partitioned mesh. For typical problems and with ''normal'' mesh partitionings we have observed nearly linear speedups on up to 126 processors. This is an important and desirable result, since although analyses of structured meshes indicate that parallel sweeps will not scale with normal partitioning approaches, we do not observe any severe asymptotic degradation in the parallel efficiency with modest ({le}100) levels of parallelism. This work is a fundamental step in the development of parallel S{sub n} methods.
Reaction rates for reaction-diffusion kinetics on unstructured meshes
NASA Astrophysics Data System (ADS)
Hellander, Stefan; Petzold, Linda
2017-02-01
The reaction-diffusion master equation is a stochastic model often utilized in the study of biochemical reaction networks in living cells. It is applied when the spatial distribution of molecules is important to the dynamics of the system. A viable approach to resolve the complex geometry of cells accurately is to discretize space with an unstructured mesh. Diffusion is modeled as discrete jumps between nodes on the mesh, and the diffusion jump rates can be obtained through a discretization of the diffusion equation on the mesh. Reactions can occur when molecules occupy the same voxel. In this paper, we develop a method for computing accurate reaction rates between molecules occupying the same voxel in an unstructured mesh. For large voxels, these rates are known to be well approximated by the reaction rates derived by Collins and Kimball, but as the mesh is refined, no analytical expression for the rates exists. We reduce the problem of computing accurate reaction rates to a pure preprocessing step, depending only on the mesh and not on the model parameters, and we devise an efficient numerical scheme to estimate them to high accuracy. We show in several numerical examples that as we refine the mesh, the results obtained with the reaction-diffusion master equation approach those of a more fine-grained Smoluchowski particle-tracking model.
Kothe, D.B.; Turner, J.A.; Mosso, S.J.; Ferrell, R.C.
1997-03-01
We discuss selected aspects of a new parallel three-dimensional (3-D) computational tool for the unstructured mesh simulation of Los Alamos National Laboratory (LANL) casting processes. This tool, known as {bold Telluride}, draws upon on robust, high resolution finite volume solutions of metal alloy mass, momentum, and enthalpy conservation equations to model the filling, cooling, and solidification of LANL castings. We briefly describe the current {bold Telluride} physical models and solution methods, then detail our parallelization strategy as implemented with Fortran 90 (F90). This strategy has yielded straightforward and efficient parallelization on distributed and shared memory architectures, aided in large part by new parallel libraries {bold JTpack9O} for Krylov-subspace iterative solution methods and {bold PGSLib} for efficient gather/scatter operations. We illustrate our methodology and current capabilities with source code examples and parallel efficiency results for a LANL casting simulation.
Rotor Airloads Prediction Using Unstructured Meshes and Loose CFD/CSD Coupling
NASA Technical Reports Server (NTRS)
Biedron, Robert T.; Lee-Rausch, Elizabeth M.
2008-01-01
The FUN3D unsteady Reynolds-averaged Navier-Stokes solver for unstructured grids has been modified to allow prediction of trimmed rotorcraft airloads. The trim of the rotorcraft and the aeroelastic deformation of the rotor blades are accounted for via loose coupling with the CAMRAD II rotorcraft computational structural dynamics code. The set of codes is used to analyze the HART-II Baseline, Minimum Noise and Minimum Vibration test conditions. The loose coupling approach is found to be stable and convergent for the cases considered. Comparison of the resulting airloads and structural deformations with experimentally measured data is presented. The effect of grid resolution and temporal accuracy is examined. Rotorcraft airloads prediction presents a very substantial challenge for Computational Fluid Dynamics (CFD). Not only must the unsteady nature of the flow be accurately modeled, but since most rotorcraft blades are not structurally stiff, an accurate simulation must account for the blade structural dynamics. In addition, trim of the rotorcraft to desired thrust and moment targets depends on both aerodynamic loads and structural deformation, and vice versa. Further, interaction of the fuselage with the rotor flow field can be important, so that relative motion between the blades and the fuselage must be accommodated. Thus a complete simulation requires coupled aerodynamics, structures and trim, with the ability to model geometrically complex configurations. NASA has recently initiated a Subsonic Rotary Wing (SRW) Project under the overall Fundamental Aeronautics Program. Within the context of SRW are efforts aimed at furthering the state of the art of high-fidelity rotorcraft flow simulations, using both structured and unstructured meshes. Structured-mesh solvers have an advantage in computation speed, but even though remarkably complex configurations may be accommodated using the overset grid approach, generation of complex structured-mesh systems can require
Euler Flow Computations on Non-Matching Unstructured Meshes
NASA Technical Reports Server (NTRS)
Gumaste, Udayan
1999-01-01
Advanced fluid solvers to predict aerodynamic performance-coupled treatment of multiple fields are described. The interaction between the fluid and structural components in the bladed regions of the engine is investigated with respect to known blade failures caused by either flutter or forced vibrations. Methods are developed to describe aeroelastic phenomena for internal flows in turbomachinery by accounting for the increased geometric complexity, mutual interaction between adjacent structural components and presence of thermal and geometric loading. The computer code developed solves the full three dimensional aeroelastic problem of-stage. The results obtained show that flow computations can be performed on non-matching finite-volume unstructured meshes with second order spatial accuracy.
Robust and efficient overset grid assembly for partitioned unstructured meshes
Roget, Beatrice Sitaraman, Jayanarayanan
2014-03-01
This paper presents a method to perform efficient and automated Overset Grid Assembly (OGA) on a system of overlapping unstructured meshes in a parallel computing environment where all meshes are partitioned into multiple mesh-blocks and processed on multiple cores. The main task of the overset grid assembler is to identify, in parallel, among all points in the overlapping mesh system, at which points the flow solution should be computed (field points), interpolated (receptor points), or ignored (hole points). Point containment search or donor search, an algorithm to efficiently determine the cell that contains a given point, is the core procedure necessary for accomplishing this task. Donor search is particularly challenging for partitioned unstructured meshes because of the complex irregular boundaries that are often created during partitioning. Another challenge arises because of the large variation in the type of mesh-block overlap and the resulting large load imbalance on multiple processors. Desirable traits for the grid assembly method are efficiency (requiring only a small fraction of the solver time), robustness (correct identification of all point types), and full automation (no user input required other than the mesh system). Additionally, the method should be scalable, which is an important challenge due to the inherent load imbalance. This paper describes a fully-automated grid assembly method, which can use two different donor search algorithms. One is based on the use of auxiliary grids and Exact Inverse Maps (EIM), and the other is based on the use of Alternating Digital Trees (ADT). The EIM method is demonstrated to be more efficient than the ADT method, while retaining robustness. An adaptive load re-balance algorithm is also designed and implemented, which considerably improves the scalability of the method.
Unstructured Mesh Methods for the Simulation of Hypersonic Flows
NASA Technical Reports Server (NTRS)
Peraire, Jaime; Bibb, K. L. (Technical Monitor)
2001-01-01
This report describes the research work undertaken at the Massachusetts Institute of Technology. The aim of this research is to identify effective algorithms and methodologies for the efficient and routine solution of hypersonic viscous flows about re-entry vehicles. For over ten years we have received support from NASA to develop unstructured mesh methods for Computational Fluid Dynamics. As a result of this effort a methodology based on the use, of unstructured adapted meshes of tetrahedra and finite volume flow solvers has been developed. A number of gridding algorithms flow solvers, and adaptive strategies have been proposed. The most successful algorithms developed from the basis of the unstructured mesh system FELISA. The FELISA system has been extensively for the analysis of transonic and hypersonic flows about complete vehicle configurations. The system is highly automatic and allows for the routine aerodynamic analysis of complex configurations starting from CAD data. The code has been parallelized and utilizes efficient solution algorithms. For hypersonic flows, a version of the, code which incorporates real gas effects, has been produced. One of the latest developments before the start of this grant was to extend the system to include viscous effects. This required the development of viscous generators, capable of generating the anisotropic grids required to represent boundary layers, and viscous flow solvers. In figures I and 2, we show some sample hypersonic viscous computations using the developed viscous generators and solvers. Although these initial results were encouraging, it became apparent that in order to develop a fully functional capability for viscous flows, several advances in gridding, solution accuracy, robustness and efficiency were required. As part of this research we have developed: 1) automatic meshing techniques and the corresponding computer codes have been delivered to NASA and implemented into the GridEx system, 2) a finite
Multigrid Strategies for Viscous Flow Solvers on Anisotropic Unstructured Meshes
NASA Technical Reports Server (NTRS)
Movriplis, Dimitri J.
1998-01-01
Unstructured multigrid techniques for relieving the stiffness associated with high-Reynolds number viscous flow simulations on extremely stretched grids are investigated. One approach consists of employing a semi-coarsening or directional-coarsening technique, based on the directions of strong coupling within the mesh, in order to construct more optimal coarse grid levels. An alternate approach is developed which employs directional implicit smoothing with regular fully coarsened multigrid levels. The directional implicit smoothing is obtained by constructing implicit lines in the unstructured mesh based on the directions of strong coupling. Both approaches yield large increases in convergence rates over the traditional explicit full-coarsening multigrid algorithm. However, maximum benefits are achieved by combining the two approaches in a coupled manner into a single algorithm. An order of magnitude increase in convergence rate over the traditional explicit full-coarsening algorithm is demonstrated, and convergence rates for high-Reynolds number viscous flows which are independent of the grid aspect ratio are obtained. Further acceleration is provided by incorporating low-Mach-number preconditioning techniques, and a Newton-GMRES strategy which employs the multigrid scheme as a preconditioner. The compounding effects of these various techniques on speed of convergence is documented through several example test cases.
Parallel performance optimizations on unstructured mesh-based simulations
Sarje, Abhinav; Song, Sukhyun; Jacobsen, Douglas; ...
2015-06-01
This paper addresses two key parallelization challenges the unstructured mesh-based ocean modeling code, MPAS-Ocean, which uses a mesh based on Voronoi tessellations: (1) load imbalance across processes, and (2) unstructured data access patterns, that inhibit intra- and inter-node performance. Our work analyzes the load imbalance due to naive partitioning of the mesh, and develops methods to generate mesh partitioning with better load balance and reduced communication. Furthermore, we present methods that minimize both inter- and intranode data movement and maximize data reuse. Our techniques include predictive ordering of data elements for higher cache efficiency, as well as communication reduction approaches.more » We present detailed performance data when running on thousands of cores using the Cray XC30 supercomputer and show that our optimization strategies can exceed the original performance by over 2×. Additionally, many of these solutions can be broadly applied to a wide variety of unstructured grid-based computations.« less
Numerical study of Taylor bubbles with adaptive unstructured meshes
NASA Astrophysics Data System (ADS)
Xie, Zhihua; Pavlidis, Dimitrios; Percival, James; Pain, Chris; Matar, Omar; Hasan, Abbas; Azzopardi, Barry
2014-11-01
The Taylor bubble is a single long bubble which nearly fills the entire cross section of a liquid-filled circular tube. This type of bubble flow regime often occurs in gas-liquid slug flows in many industrial applications, including oil-and-gas production, chemical and nuclear reactors, and heat exchangers. The objective of this study is to investigate the fluid dynamics of Taylor bubbles rising in a vertical pipe filled with oils of extremely high viscosity (mimicking the ``heavy oils'' found in the oil-and-gas industry). A modelling and simulation framework is presented here which can modify and adapt anisotropic unstructured meshes to better represent the underlying physics of bubble rise and reduce the computational effort without sacrificing accuracy. The numerical framework consists of a mixed control-volume and finite-element formulation, a ``volume of fluid''-type method for the interface capturing based on a compressive control volume advection method, and a force-balanced algorithm for the surface tension implementation. Numerical examples of some benchmark tests and the dynamics of Taylor bubbles are presented to show the capability of this method. EPSRC Programme Grant, MEMPHIS, EP/K0039761/1.
Out-of-Core Streamline Visualization on Large Unstructured Meshes
NASA Technical Reports Server (NTRS)
Ueng, Shyh-Kuang; Sikorski, K.; Ma, Kwan-Liu
1997-01-01
It's advantageous for computational scientists to have the capability to perform interactive visualization on their desktop workstations. For data on large unstructured meshes, this capability is not generally available. In particular, particle tracing on unstructured grids can result in a high percentage of non-contiguous memory accesses and therefore may perform very poorly with virtual memory paging schemes. The alternative of visualizing a lower resolution of the data degrades the original high-resolution calculations. This paper presents an out-of-core approach for interactive streamline construction on large unstructured tetrahedral meshes containing millions of elements. The out-of-core algorithm uses an octree to partition and restructure the raw data into subsets stored into disk files for fast data retrieval. A memory management policy tailored to the streamline calculations is used such that during the streamline construction only a very small amount of data are brought into the main memory on demand. By carefully scheduling computation and data fetching, the overhead of reading data from the disk is significantly reduced and good memory performance results. This out-of-core algorithm makes possible interactive streamline visualization of large unstructured-grid data sets on a single mid-range workstation with relatively low main-memory capacity: 5-20 megabytes. Our test results also show that this approach is much more efficient than relying on virtual memory and operating system's paging algorithms.
An efficient approach to unstructured mesh hydrodynamics on the cell broadband engine
Ferenbaugh, Charles R
2010-01-01
Unstructured mesh physics for the Cell Broadband Engine (CBE) has received little or no attention to date, largely because the CBE architecture poses particular challenges for unstructured mesh algorithms. The most common SPU memory management strategies cannot be applied to the irregular memory access patterns of unstructured meshes, and the SPU vector instruction set does not support the indirect addressing needed by connectivity arrays. This paper presents an approach to unstructured mesh physics that addresses these challenges, by creating a new mesh data structure and reorganizing code to give efficient CBE performance. The approach is demonstrated on the FLAG production hydrodynamics code using standard test problems, and results show an average speedup of more than 5x over the original code.
An efficient approach to unstructured mesh hydrodynamics on the cell broadband engine (u)
Ferenbaugh, Charles R
2010-12-14
Unstructured mesh physics for the Cell Broadband Engine (CBE) has received little or no attention to date, largely because the CBE architecture poses particular challenges for unstructured mesh algorithms. SPU memory management strategies such as data preloading cannot be applied to the irregular memory storage patterns of unstructured meshes; and the SPU vector instruction set does not support the indirect addressing needed by connectivity arrays. This paper presents an approach to unstructured mesh physics that addresses these challenges, by creating a new mesh data structure and reorganizing code to give efficient CBE performance. The approach is demonstrated on the FLAG production hydrodynamics code using standard test problems, and results show an average speedup of more than 5x over the original code.
Numerical simulation of immiscible viscous fingering using adaptive unstructured meshes
NASA Astrophysics Data System (ADS)
Adam, A.; Salinas, P.; Percival, J. R.; Pavlidis, D.; Pain, C.; Muggeridge, A. H.; Jackson, M.
2015-12-01
Displacement of one fluid by another in porous media occurs in various settings including hydrocarbon recovery, CO2 storage and water purification. When the invading fluid is of lower viscosity than the resident fluid, the displacement front is subject to a Saffman-Taylor instability and is unstable to transverse perturbations. These instabilities can grow, leading to fingering of the invading fluid. Numerical simulation of viscous fingering is challenging. The physics is controlled by a complex interplay of viscous and diffusive forces and it is necessary to ensure physical diffusion dominates numerical diffusion to obtain converged solutions. This typically requires the use of high mesh resolution and high order numerical methods. This is computationally expensive. We demonstrate here the use of a novel control volume - finite element (CVFE) method along with dynamic unstructured mesh adaptivity to simulate viscous fingering with higher accuracy and lower computational cost than conventional methods. Our CVFE method employs a discontinuous representation for both pressure and velocity, allowing the use of smaller control volumes (CVs). This yields higher resolution of the saturation field which is represented CV-wise. Moreover, dynamic mesh adaptivity allows high mesh resolution to be employed where it is required to resolve the fingers and lower resolution elsewhere. We use our results to re-examine the existing criteria that have been proposed to govern the onset of instability.Mesh adaptivity requires the mapping of data from one mesh to another. Conventional methods such as consistent interpolation do not readily generalise to discontinuous fields and are non-conservative. We further contribute a general framework for interpolation of CV fields by Galerkin projection. The method is conservative, higher order and yields improved results, particularly with higher order or discontinuous elements where existing approaches are often excessively diffusive.
Simulation of all-scale atmospheric dynamics on unstructured meshes
NASA Astrophysics Data System (ADS)
Smolarkiewicz, Piotr K.; Szmelter, Joanna; Xiao, Feng
2016-10-01
The advance of massively parallel computing in the nineteen nineties and beyond encouraged finer grid intervals in numerical weather-prediction models. This has improved resolution of weather systems and enhanced the accuracy of forecasts, while setting the trend for development of unified all-scale atmospheric models. This paper first outlines the historical background to a wide range of numerical methods advanced in the process. Next, the trend is illustrated with a technical review of a versatile nonoscillatory forward-in-time finite-volume (NFTFV) approach, proven effective in simulations of atmospheric flows from small-scale dynamics to global circulations and climate. The outlined approach exploits the synergy of two specific ingredients: the MPDATA methods for the simulation of fluid flows based on the sign-preserving properties of upstream differencing; and the flexible finite-volume median-dual unstructured-mesh discretisation of the spatial differential operators comprising PDEs of atmospheric dynamics. The paper consolidates the concepts leading to a family of generalised nonhydrostatic NFTFV flow solvers that include soundproof PDEs of incompressible Boussinesq, anelastic and pseudo-incompressible systems, common in large-eddy simulation of small- and meso-scale dynamics, as well as all-scale compressible Euler equations. Such a framework naturally extends predictive skills of large-eddy simulation to the global atmosphere, providing a bottom-up alternative to the reverse approach pursued in the weather-prediction models. Theoretical considerations are substantiated by calculations attesting to the versatility and efficacy of the NFTFV approach. Some prospective developments are also discussed.
A nonhydrostatic unstructured-mesh soundproof model for simulation of internal gravity waves
NASA Astrophysics Data System (ADS)
Smolarkiewicz, Piotr; Szmelter, Joanna
2011-12-01
A semi-implicit edge-based unstructured-mesh model is developed that integrates nonhydrostatic soundproof equations, inclusive of anelastic and pseudo-incompressible systems of partial differential equations. The model builds on nonoscillatory forward-in-time MPDATA approach using finite-volume discretization and unstructured meshes with arbitrarily shaped cells. Implicit treatment of gravity waves benefits both accuracy and stability of the model. The unstructured-mesh solutions are compared to equivalent structured-grid results for intricate, multiscale internal-wave phenomenon of a non-Boussinesq amplification and breaking of deep stratospheric gravity waves. The departures of the anelastic and pseudoincompressible results are quantified in reference to a recent asymptotic theory [Achatz et al. 2010, J. Fluid Mech., 663, 120-147)].
Adaptive unstructured meshing for thermal stress analysis of built-up structures
NASA Technical Reports Server (NTRS)
Dechaumphai, Pramote
1992-01-01
An adaptive unstructured meshing technique for mechanical and thermal stress analysis of built-up structures has been developed. A triangular membrane finite element and a new plate bending element are evaluated on a panel with a circular cutout and a frame stiffened panel. The adaptive unstructured meshing technique, without a priori knowledge of the solution to the problem, generates clustered elements only where needed. An improved solution accuracy is obtained at a reduced problem size and analysis computational time as compared to the results produced by the standard finite element procedure.
On essentially non-oscillatory schemes on unstructured meshes: Analysis and implementation
NASA Technical Reports Server (NTRS)
Abgrall, R.
1992-01-01
A few years ago, the class of Essentially Non-Oscillatory Schemes for the numerical simulation of hyperbolic equations and systems was constructed. Since then, some extensions have been made to multidimensional simulations of compressible flows, mainly in the context of very regular structured meshes. In this paper, we first recall and improve the results of an earlier paper about non-oscillatory reconstruction on unstructured meshes, emphasizing the effective calculation of the reconstruction. Then we describe a class of numerical schemes on unstructured meshes and give some applications for its third order version. This demonstrates that a higher order of accuracy is indeed obtained, even on very irregular meshes.
Euler and Navier-Stokes computations for two-dimensional geometries using unstructured meshes
NASA Technical Reports Server (NTRS)
Mavriplis, D. J.
1990-01-01
A general purpose unstructured mesh solver for steady-state two-dimensional inviscid and viscous flows is described. The efficiency and accuracy of the method are enhanced by the simultaneous use of adaptive meshing and an unstructured multigrid technique. A method for generating highly stretched triangulations in regions of viscous flow is outlined, and a procedure for implementing an algebraic turbulence model on unstructured meshes is described. Results are shown for external and internal inviscid flows and for turbulent viscous flow over a multi-element airfoil configuration.
An unstructured-mesh finite-volume MPDATA for compressible atmospheric dynamics
NASA Astrophysics Data System (ADS)
Kühnlein, Christian; Smolarkiewicz, Piotr K.
2017-04-01
An advancement of the unstructured-mesh finite-volume MPDATA (Multidimensional Positive Definite Advection Transport Algorithm) is presented that formulates the error-compensative pseudo-velocity of the scheme to rely only on face-normal advective fluxes to the dual cells, in contrast to the full vector employed in previous implementations. This is essentially achieved by expressing the temporal truncation error underlying the pseudo-velocity in a form consistent with the flux-divergence of the governing conservation law. The development is especially important for integrating fluid dynamics equations on non-rectilinear meshes whenever face-normal advective mass fluxes are employed for transport compatible with mass continuity-the latter being essential for flux-form schemes. In particular, the proposed formulation enables large-time-step semi-implicit finite-volume integration of the compressible Euler equations using MPDATA on arbitrary hybrid computational meshes. Furthermore, it facilitates multiple error-compensative iterations of the finite-volume MPDATA and improved overall accuracy. The advancement combines straightforwardly with earlier developments, such as the nonoscillatory option, the infinite-gauge variant, and moving curvilinear meshes. A comprehensive description of the scheme is provided for a hybrid horizontally-unstructured vertically-structured computational mesh for efficient global atmospheric flow modelling. The proposed finite-volume MPDATA is verified using selected 3D global atmospheric benchmark simulations, representative of hydrostatic and non-hydrostatic flow regimes. Besides the added capabilities, the scheme retains fully the efficacy of established finite-volume MPDATA formulations.
A 3D Unstructured Mesh Euler Solver Based on the Fourth-Order CESE Method
2013-06-01
conservation in space and time without using a one-dimensional Riemann solver, (ii) genuinely multi-dimensional treatment without dimensional splitting (iii...of the original second-order CESE method, including: (i) flux conservation in space and time without using a one-dimensional Riemann solver, (ii...treated in a unified manner. The geometry for a three-dimensional CESE method is more difficult to visualize than the one- and two-dimensional methods
Euler and Navier-Stokes Computations for Two-Dimensional Geometries Using Unstructured Meshes
1990-01-01
by the simultaneous use of adaptive meshing and an unstructured multigrid technique . A method for generating highly stretched triangulations in regions...are enhanced by the simultanious use of adaptive meshing and an unstruc- tured multigrid technique . A method for generating highly stretched triangula...unstructured mesh solver for steady-state two-dimensional inviscid and viscous flows is described. The efficiency and accuracy of the method are enhanced
On Essentially Non-Oscillatory Schemes on Unstructured Meshes: Analysis and Implementation
1992-12-01
is to use a Lagrange type interpolation with an adapted stencil: when a discontinuity is detected, the procedure looks for the region around this...be introduced for unstructured meshes. We first recall how to interpolate data in an essentially non-oscillatory Lagrange fashion, and then how this...is used to reconstruct 1D data. Essentially non-oscillatory interpolation . This relies on two well known properties of divided differences. Let {yo
A Parallel Unstructured-Mesh Methodology for Device-Scale Combustion Calculations
O'Rourke, P.J.; Sahota, M.S.; Zhang, S.
1998-12-03
At Los Alamos we are developing a parallel, unstructured-mesh, finite-volume CFD methodology for the simulation of chemically reactive flows in complex geometries. The methodology is embodied in the CHAD (Computational Hydrodynamics for Advanced Design) code. In this report we give an overview of the CHAD numerical methodology and present parallel scaling results for calculations of flows in a four-valve diesel engine.
NASA Astrophysics Data System (ADS)
Denner, Fabian; van Wachem, Berend G. M.
2015-10-01
Total variation diminishing (TVD) schemes are a widely applied group of monotonicity-preserving advection differencing schemes for partial differential equations in numerical heat transfer and computational fluid dynamics. These schemes are typically designed for one-dimensional problems or multidimensional problems on structured equidistant quadrilateral meshes. Practical applications, however, often involve complex geometries that cannot be represented by Cartesian meshes and, therefore, necessitate the application of unstructured meshes, which require a more sophisticated discretisation to account for their additional topological complexity. In principle, TVD schemes are applicable to unstructured meshes, however, not all the data required for TVD differencing is readily available on unstructured meshes, and the solution suffers from considerable numerical diffusion as a result of mesh skewness. In this article we analyse TVD differencing on unstructured three-dimensional meshes, focusing on the non-linearity of TVD differencing and the extrapolation of the virtual upwind node. Furthermore, we propose a novel monotonicity-preserving correction method for TVD schemes that significantly reduces numerical diffusion caused by mesh skewness. The presented numerical experiments demonstrate the importance of accounting for the non-linearity introduced by TVD differencing and of imposing carefully chosen limits on the extrapolated virtual upwind node, as well as the efficacy of the proposed method to correct mesh skewness.
Unstructured Polyhedral Mesh Thermal Radiation Diffusion
Palmer, T.S.; Zika, M.R.; Madsen, N.K.
2000-07-27
Unstructured mesh particle transport and diffusion methods are gaining wider acceptance as mesh generation, scientific visualization and linear solvers improve. This paper describes an algorithm that is currently being used in the KULL code at Lawrence Livermore National Laboratory to solve the radiative transfer equations. The algorithm employs a point-centered diffusion discretization on arbitrary polyhedral meshes in 3D. We present the results of a few test problems to illustrate the capabilities of the radiation diffusion module.
An Interpreted Language and System for the Visualization of Unstructured Meshes
NASA Technical Reports Server (NTRS)
Moran, Patrick J.; Gerald-Yamasaki, Michael (Technical Monitor)
1998-01-01
We present an interpreted language and system supporting the visualization of unstructured meshes and the manipulation of shapes defined in terms of mesh subsets. The language features primitives inspired by geometric modeling, mathematical morphology and algebraic topology. The adaptation of the topology ideas to an interpreted environment, along with support for programming constructs such, as user function definition, provide a flexible system for analyzing a mesh and for calculating with shapes defined in terms of the mesh. We present results demonstrating some of the capabilities of the language, based on an implementation called the Shape Calculator, for tetrahedral meshes in R^3.
NASA Astrophysics Data System (ADS)
Ismagilov, Timur Z.
2015-02-01
This paper presents a second order finite volume scheme for numerical solution of Maxwell's equations with discontinuous dielectric permittivity and magnetic permeability on unstructured meshes. The scheme is based on Godunov scheme and employs approaches of Van Leer and Lax-Wendroff to increase the order of approximation. To keep the second order of approximation near dielectric permittivity and magnetic permeability discontinuities a novel technique for gradient calculation and limitation is applied near discontinuities. Results of test computations for problems with linear and curvilinear discontinuities confirm second order of approximation. The scheme was applied to modelling propagation of electromagnetic waves inside photonic crystal waveguides with a bend.
Multiphase flow modelling of explosive volcanic eruptions using adaptive unstructured meshes
NASA Astrophysics Data System (ADS)
Jacobs, Christian T.; Collins, Gareth S.; Piggott, Matthew D.; Kramer, Stephan C.
2014-05-01
Explosive volcanic eruptions generate highly energetic plumes of hot gas and ash particles that produce diagnostic deposits and pose an extreme environmental hazard. The formation, dispersion and collapse of these volcanic plumes are complex multiscale processes that are extremely challenging to simulate numerically. Accurate description of particle and droplet aggregation, movement and settling requires a model capable of capturing the dynamics on a range of scales (from cm to km) and a model that can correctly describe the important multiphase interactions that take place. However, even the most advanced models of eruption dynamics to date are restricted by the fixed mesh-based approaches that they employ. The research presented herein describes the development of a compressible multiphase flow model within Fluidity, a combined finite element / control volume computational fluid dynamics (CFD) code, for the study of explosive volcanic eruptions. Fluidity adopts a state-of-the-art adaptive unstructured mesh-based approach to discretise the domain and focus numerical resolution only in areas important to the dynamics, while decreasing resolution where it is not needed as a simulation progresses. This allows the accurate but economical representation of the flow dynamics throughout time, and potentially allows large multi-scale problems to become tractable in complex 3D domains. The multiphase flow model is verified with the method of manufactured solutions, and validated by simulating published gas-solid shock tube experiments and comparing the numerical results against pressure gauge data. The application of the model considers an idealised 7 km by 7 km domain in which the violent eruption of hot gas and volcanic ash high into the atmosphere is simulated. Although the simulations do not correspond to a particular eruption case study, the key flow features observed in a typical explosive eruption event are successfully captured. These include a shock wave resulting
FlexyDos3D: a deformable anthropomorphic 3D radiation dosimeter: radiation properties
NASA Astrophysics Data System (ADS)
De Deene, Y.; Skyt, P. S.; Hil, R.; Booth, J. T.
2015-02-01
Three dimensional radiation dosimetry has received growing interest with the implementation of highly conformal radiotherapy treatments. The radiotherapy community faces new challenges with the commissioning of image guided and image gated radiotherapy treatments (IGRT) and deformable image registration software. A new three dimensional anthropomorphically shaped flexible dosimeter, further called ‘FlexyDos3D’, has been constructed and a new fast optical scanning method has been implemented that enables scanning of irregular shaped dosimeters. The FlexyDos3D phantom can be actuated and deformed during the actual treatment. FlexyDos3D offers the additional advantage that it is easy to fabricate, is non-toxic and can be molded in an arbitrary shape with high geometrical precision. The dosimeter formulation has been optimized in terms of dose sensitivity. The influence of the casting material and oxygen concentration has also been investigated. The radiophysical properties of this new dosimeter are discussed including stability, spatial integrity, temperature dependence of the dosimeter during radiation, readout and storage, dose rate dependence and tissue equivalence. The first authors Y De Deene and P S Skyt made an equivalent contribution to the experimental work presented in this paper.
SB3D User Manual, Santa Barbara 3D Radiative Transfer Model
O'Hirok, William
1999-01-01
SB3D is a three-dimensional atmospheric and oceanic radiative transfer model for the Solar spectrum. The microphysics employed in the model are the same as used in the model SBDART. It is assumed that the user of SB3D is familiar with SBDART and IDL. SB3D differs from SBDART in that computations are conducted on media in three-dimensions rather than a single column (i.e. plane-parallel), and a stochastic method (Monte Carlo) is employed instead of a numerical approach (Discrete Ordinates) for estimating a solution to the radiative transfer equation. Because of these two differences between SB3D and SBDART, the input and running of SB3D is more unwieldy and requires compromises between model performance and computational expense. Hence, there is no one correct method for running the model and the user must develop a sense to the proper input and configuration of the model.
Earth As An Unstructured Mesh and Its Recovery from Seismic Waveform Data
NASA Astrophysics Data System (ADS)
De Hoop, M. V.
2015-12-01
We consider multi-scale representations of Earth's interior from thepoint of view of their possible recovery from multi- andhigh-frequency seismic waveform data. These representations areintrinsically connected to (geologic, tectonic) structures, that is,geometric parametrizations of Earth's interior. Indeed, we address theconstruction and recovery of such parametrizations using localiterative methods with appropriately designed data misfits andguaranteed convergence. The geometric parametrizations containinterior boundaries (defining, for example, faults, salt bodies,tectonic blocks, slabs) which can, in principle, be obtained fromsuccessive segmentation. We make use of unstructured meshes. For the adaptation and recovery of an unstructured mesh we introducean energy functional which is derived from the Hausdorff distance. Viaan augmented Lagrangian method, we incorporate the mentioned datamisfit. The recovery is constrained by shape optimization of theinterior boundaries, and is reminiscent of Hausdorff warping. We useelastic deformation via finite elements as a regularization whilefollowing a two-step procedure. The first step is an update determinedby the energy functional; in the second step, we modify the outcome ofthe first step where necessary to ensure that the new mesh isregular. This modification entails an array of techniques includingtopology correction involving interior boundary contacting andbreakup, edge warping and edge removal. We implement this as afeed-back mechanism from volume to interior boundary meshesoptimization. We invoke and apply a criterion of mesh quality controlfor coarsening, and for dynamical local multi-scale refinement. Wepresent a novel (fluid-solid) numerical framework based on theDiscontinuous Galerkin method.
Framework for a Robust General Purpose Navier-Stokes Solver on Unstructured Meshes
NASA Astrophysics Data System (ADS)
Xiao, Cheng-Nian; Denner, Fabian; van Wachem, Berend G. M.
2016-11-01
A numerical framework for a pressure-based all-speeds flow solver operating on unstructured meshes, which is robust for a broad range of flow configurations, is proposed. The distinct features of our framework are the full coupling of the momentum and continuity equations as well as the use of an energy equation in conservation form to relate the thermal quantities with the flow field. In order to overcome the well-documented instability occurring while coupling the thermal energy to the remaining flow variables, a multistage iteration cycle has been devised which exhibits excellent convergence behavior without requiring any numerical relaxation parameters. Different spatial schemes for accurate shock resolution as well as complex thermodynamic gas models are also seamlessly incorporated into the framework. The solver is directly applicable to stationary and transient flows in all Mach number regimes (sub-, trans-, supersonic), exhibits strong robustness and accurately predicts flow and thermal variables at all speeds across shocks of different strengths. We present a wide range of results for both steady and transient compressible flows with vastly different Mach numbers and thermodynamic conditions in complex geometries represented by different types of unstructured meshes. The authors are grateful for the financial support provided by Shell.
Topographic accuracy assessment of bare earth lidar-derived unstructured meshes
NASA Astrophysics Data System (ADS)
Bilskie, Matthew V.; Hagen, Scott C.
2013-02-01
This study is focused on the integration of bare earth lidar (Light Detection and Ranging) data into unstructured (triangular) finite element meshes and the implications on simulating storm surge inundation using a shallow water equations model. A methodology is developed to compute root mean square error (RMSE) and the 95th percentile of vertical elevation errors using four different interpolation methods (linear, inverse distance weighted, natural neighbor, and cell averaging) to resample bare earth lidar and lidar-derived digital elevation models (DEMs) onto unstructured meshes at different resolutions. The results are consolidated into a table of optimal interpolation methods that minimize the vertical elevation error of an unstructured mesh for a given mesh node density. The cell area averaging method performed most accurate when DEM grid cells within 0.25 times the ratio of local element size and DEM cell size were averaged. The methodology is applied to simulate inundation extent and maximum water levels in southern Mississippi due to Hurricane Katrina, which illustrates that local changes in topography such as adjusting element size and interpolation method drastically alter simulated storm surge locally and non-locally. The methods and results presented have utility and implications to any modeling application that uses bare earth lidar.
NASA Astrophysics Data System (ADS)
Christlieb, Andrew J.; Liu, Yuan; Tang, Qi; Xu, Zhengfu
2015-01-01
In this paper, we generalize the maximum-principle-preserving (MPP) flux limiting technique developed by Xu (2013) [20] to a class of high order finite volume weighted essentially non-oscillatory (WENO) schemes for scalar conservation laws and the compressible Euler system on unstructured meshes in one and two dimensions. The key idea of this parameterized limiting technique is to limit the high order numerical flux with a first order flux which preserves the MPP or positivity-preserving (PP) property. The main purpose of this paper is to investigate the flux limiting approach with high order finite volume method on unstructured meshes which are often needed for solving some important problems on irregular domains. Truncation error analysis based on one-dimensional nonuniform meshes is presented to justify that the proposed MPP schemes can maintain third order accuracy in space and time. We also demonstrate through smooth test problems that the proposed third order MPP/PP WENO schemes coupled with a third order Runge-Kutta (RK) method attain the desired order of accuracy. Several test problems containing strong shocks and complex domain geometries are also presented to assess the performance of the schemes.
Revisiting the Least-squares Procedure for Gradient Reconstruction on Unstructured Meshes
NASA Technical Reports Server (NTRS)
Mavriplis, Dimitri J.; Thomas, James L. (Technical Monitor)
2003-01-01
The accuracy of the least-squares technique for gradient reconstruction on unstructured meshes is examined. While least-squares techniques produce accurate results on arbitrary isotropic unstructured meshes, serious difficulties exist for highly stretched meshes in the presence of surface curvature. In these situations, gradients are typically under-estimated by up to an order of magnitude. For vertex-based discretizations on triangular and quadrilateral meshes, and cell-centered discretizations on quadrilateral meshes, accuracy can be recovered using an inverse distance weighting in the least-squares construction. For cell-centered discretizations on triangles, both the unweighted and weighted least-squares constructions fail to provide suitable gradient estimates for highly stretched curved meshes. Good overall flow solution accuracy can be retained in spite of poor gradient estimates, due to the presence of flow alignment in exactly the same regions where the poor gradient accuracy is observed. However, the use of entropy fixes has the potential for generating large but subtle discretization errors.
Numerical study of three-dimensional liquid jet breakup with adaptive unstructured meshes
NASA Astrophysics Data System (ADS)
Xie, Zhihua; Pavlidis, Dimitrios; Salinas, Pablo; Pain, Christopher; Matar, Omar
2016-11-01
Liquid jet breakup is an important fundamental multiphase flow, often found in many industrial engineering applications. The breakup process is very complex, involving jets, liquid films, ligaments, and small droplets, featuring tremendous complexity in interfacial topology and a large range of spatial scales. The objective of this study is to investigate the fluid dynamics of three-dimensional liquid jet breakup problems, such as liquid jet primary breakup and gas-sheared liquid jet breakup. An adaptive unstructured mesh modelling framework is employed here, which can modify and adapt unstructured meshes to optimally represent the underlying physics of multiphase problems and reduce computational effort without sacrificing accuracy. The numerical framework consists of a mixed control volume and finite element formulation, a 'volume of fluid' type method for the interface capturing based on a compressive control volume advection method and second-order finite element methods, and a force-balanced algorithm for the surface tension implementation. Numerical examples of some benchmark tests and the dynamics of liquid jet breakup with and without ambient gas are presented to demonstrate the capability of this method.
NASA Astrophysics Data System (ADS)
Li, Xujing; Zheng, Weiying
2016-10-01
A new parallel code based on discontinuous Galerkin (DG) method for hyperbolic conservation laws on three dimensional unstructured meshes is developed recently. This code can be used for simulations of MHD equations, which are very important in magnetic confined plasma research. The main challenges in MHD simulations in fusion include the complex geometry of the configurations, such as plasma in tokamaks, the possibly discontinuous solutions and large scale computing. Our new developed code is based on three dimensional unstructured meshes, i.e. tetrahedron. This makes the code flexible to arbitrary geometries. Second order polynomials are used on each element and HWENO type limiter are applied. The accuracy tests show that our scheme reaches the desired three order accuracy and the nonlinear shock test demonstrate that our code can capture the sharp shock transitions. Moreover, One of the advantages of DG compared with the classical finite element methods is that the matrices solved are localized on each element, making it easy for parallelization. Several simulations including the kink instabilities in toroidal geometry will be present here. Chinese National Magnetic Confinement Fusion Science Program 2015GB110003.
Discretization of the Joule heating term for plasma discharge fluid models in unstructured meshes
Deconinck, T.; Mahadevan, S.; Raja, L.L.
2009-07-01
The fluid (continuum) approach is commonly used for simulation of plasma phenomena in electrical discharges at moderate to high pressures (>10's mTorr). The description comprises governing equations for charged and neutral species transport and energy equations for electrons and the heavy species, coupled to equations for the electromagnetic fields. The coupling of energy from the electrostatic field to the plasma species is modeled by the Joule heating term which appears in the electron and heavy species (ion) energy equations. Proper numerical discretization of this term is necessary for accurate description of discharge energetics; however, discretization of this term poses a special problem in the case of unstructured meshes owing to the arbitrary orientation of the faces enclosing each cell. We propose a method for the numerical discretization of the Joule heating term using a cell-centered finite volume approach on unstructured meshes with closed convex cells. The Joule heating term is computed by evaluating both the electric field and the species flux at the cell center. The dot product of these two vector quantities is computed to obtain the Joule heating source term. We compare two methods to evaluate the species flux at the cell center. One is based on reconstructing the fluxes at the cell centers from the fluxes at the face centers. The other recomputes the flux at the cell center using the common drift-diffusion approximation. The reconstructed flux scheme is the most stable method and yields reasonably accurate results on coarse meshes.
A three dimensional multigrid Reynolds-averaged Navier-Stokes solver for unstructured meshes
NASA Technical Reports Server (NTRS)
Mavriplis, D. J.
1994-01-01
A three-dimensional unstructured mesh Reynolds averaged Navier-Stokes solver is described. Turbulence is simulated using a single field-equation model. Computational overheads are minimized through the use of a single edge-based data-structure, and efficient multigrid solution technique, and the use of multi-tasking on shared memory multi-processors. The accuracy and efficiency of the code are evaluated by computing two-dimensional flows in three dimensions and comparing with results from a previously validated two-dimensional code which employs the same solution algorithm. The feasibility of computing three-dimensional flows on grids of several million points in less than two hours of wall clock time is demonstrated.
Pautz, Shawn D.; Bailey, Teresa S.
2016-11-29
Here, the efficiency of discrete ordinates transport sweeps depends on the scheduling algorithm, the domain decomposition, the problem to be solved, and the computational platform. Sweep scheduling algorithms may be categorized by their approach to several issues. In this paper we examine the strategy of domain overloading for mesh partitioning as one of the components of such algorithms. In particular, we extend the domain overloading strategy, previously defined and analyzed for structured meshes, to the general case of unstructured meshes. We also present computational results for both the structured and unstructured domain overloading cases. We find that an appropriate amount of domain overloading can greatly improve the efficiency of parallel sweeps for both structured and unstructured partitionings of the test problems examined on up to 10^{5} processor cores.
Parallel performance investigations of an unstructured mesh Navier-Stokes solver
NASA Technical Reports Server (NTRS)
Mavriplis, Dimitri J.
2000-01-01
A Reynolds-averaged Navier-Stokes solver based on unstructured mesh techniques for analysis of high-lift configurations is described. The method makes use of an agglomeration multigrid solver for convergence acceleration. Implicit line-smoothing is employed to relieve the stiffness associated with highly stretched meshes. A GMRES technique is also implemented to speed convergence at the expense of additional memory usage. The solver is cache efficient and fully vectorizable, and is parallelized using a two-level hybrid MPI-OpenMP implementation suitable for shared and/or distributed memory architectures, as well as clusters of shared memory machines. Convergence and scalability results are illustrated for various high-lift cases.
Pautz, Shawn D.; Bailey, Teresa S.
2016-11-29
Here, the efficiency of discrete ordinates transport sweeps depends on the scheduling algorithm, the domain decomposition, the problem to be solved, and the computational platform. Sweep scheduling algorithms may be categorized by their approach to several issues. In this paper we examine the strategy of domain overloading for mesh partitioning as one of the components of such algorithms. In particular, we extend the domain overloading strategy, previously defined and analyzed for structured meshes, to the general case of unstructured meshes. We also present computational results for both the structured and unstructured domain overloading cases. We find that an appropriate amountmore » of domain overloading can greatly improve the efficiency of parallel sweeps for both structured and unstructured partitionings of the test problems examined on up to 105 processor cores.« less
Parallel Finite Element Electron-Photon Transport Analysis on 2-D Unstructured Mesh
Drumm, C.R.
1999-01-01
A computer code has been developed to solve the linear Boltzmann transport equation on an unstructured mesh of triangles, from a Pro/E model. An arbitriwy arrangement of distinct material regions is allowed. Energy dependence is handled by solving over an arbitrary number of discrete energy groups. Angular de- pendence is treated by Legendre-polynomial expansion of the particle cross sections and a discrete ordinates treatment of the particle fluence. The resulting linear system is solved in parallel with a preconditioned conjugate-gradients method. The solution method is unique, in that the space-angle dependence is solved si- multaneously, eliminating the need for the usual inner iterations. Electron cross sections are obtained from a Goudsrnit-Saunderson modifed version of the CEPXS code. A one-dimensional version of the code has also been develop@ for testing and development purposes.
Multigrid approaches to non-linear diffusion problems on unstructured meshes
NASA Technical Reports Server (NTRS)
Mavriplis, Dimitri J.; Bushnell, Dennis M. (Technical Monitor)
2001-01-01
The efficiency of three multigrid methods for solving highly non-linear diffusion problems on two-dimensional unstructured meshes is examined. The three multigrid methods differ mainly in the manner in which the nonlinearities of the governing equations are handled. These comprise a non-linear full approximation storage (FAS) multigrid method which is used to solve the non-linear equations directly, a linear multigrid method which is used to solve the linear system arising from a Newton linearization of the non-linear system, and a hybrid scheme which is based on a non-linear FAS multigrid scheme, but employs a linear solver on each level as a smoother. Results indicate that all methods are equally effective at converging the non-linear residual in a given number of grid sweeps, but that the linear solver is more efficient in cpu time due to the lower cost of linear versus non-linear grid sweeps.
A Robust and Scalable Software Library for Parallel Adaptive Refinement on Unstructured Meshes
NASA Technical Reports Server (NTRS)
Lou, John Z.; Norton, Charles D.; Cwik, Thomas A.
1999-01-01
The design and implementation of Pyramid, a software library for performing parallel adaptive mesh refinement (PAMR) on unstructured meshes, is described. This software library can be easily used in a variety of unstructured parallel computational applications, including parallel finite element, parallel finite volume, and parallel visualization applications using triangular or tetrahedral meshes. The library contains a suite of well-designed and efficiently implemented modules that perform operations in a typical PAMR process. Among these are mesh quality control during successive parallel adaptive refinement (typically guided by a local-error estimator), parallel load-balancing, and parallel mesh partitioning using the ParMeTiS partitioner. The Pyramid library is implemented in Fortran 90 with an interface to the Message-Passing Interface (MPI) library, supporting code efficiency, modularity, and portability. An EM waveguide filter application, adaptively refined using the Pyramid library, is illustrated.
An unstructured-mesh atmospheric model for nonhydrostatic dynamics: Towards optimal mesh resolution
NASA Astrophysics Data System (ADS)
Szmelter, Joanna; Zhang, Zhao; Smolarkiewicz, Piotr K.
2015-08-01
The paper advances the limited-area anelastic model (Smolarkiewicz et al. (2013) [45]) for investigation of nonhydrostatic dynamics in mesoscale atmospheric flows. New developments include the extension to a tetrahedral-based median-dual option for unstructured meshes and a static mesh adaptivity technique using an error indicator based on inherent properties of the Multidimensional Positive Definite Advection Transport Algorithm (MPDATA). The model employs semi-implicit nonoscillatory forward-in-time integrators for soundproof PDEs, built on MPDATA and a robust non-symmetric Krylov-subspace elliptic solver. Finite-volume spatial discretisation adopts an edge-based data structure. Simulations of stratified orographic flows and the associated gravity-wave phenomena in media with uniform and variable dispersive properties verify the advancement and demonstrate the potential of heterogeneous anisotropic discretisation with large variation in spatial resolution for study of complex stratified flows that can be computationally unattainable with regular grids.
NASA Technical Reports Server (NTRS)
Sozer, Emre; Brehm, Christoph; Kiris, Cetin C.
2014-01-01
A survey of gradient reconstruction methods for cell-centered data on unstructured meshes is conducted within the scope of accuracy assessment. Formal order of accuracy, as well as error magnitudes for each of the studied methods, are evaluated on a complex mesh of various cell types through consecutive local scaling of an analytical test function. The tests highlighted several gradient operator choices that can consistently achieve 1st order accuracy regardless of cell type and shape. The tests further offered error comparisons for given cell types, leading to the observation that the "ideal" gradient operator choice is not universal. Practical implications of the results are explored via CFD solutions of a 2D inviscid standing vortex, portraying the discretization error properties. A relatively naive, yet largely unexplored, approach of local curvilinear stencil transformation exhibited surprisingly favorable properties
Multigrid solution of compressible turbulent flow on unstructured meshes using a two-equation model
NASA Technical Reports Server (NTRS)
Mavriplis, D. J.; Matinelli, L.
1994-01-01
The steady state solution of the system of equations consisting of the full Navier-Stokes equations and two turbulence equations has been obtained using a multigrid strategy of unstructured meshes. The flow equations and turbulence equations are solved in a loosely coupled manner. The flow equations are advanced in time using a multistage Runge-Kutta time-stepping scheme with a stability-bound local time step, while turbulence equations are advanced in a point-implicit scheme with a time step which guarantees stability and positivity. Low-Reynolds-number modifications to the original two-equation model are incorporated in a manner which results in well-behaved equations for arbitrarily small wall distances. A variety of aerodynamic flows are solved, initializing all quantities with uniform freestream values. Rapid and uniform convergence rates for the flow and turbulence equations are observed.
NASA Astrophysics Data System (ADS)
Jacobs, C. T.; Collins, G. S.; Piggott, M. D.; Kramer, S. C.; Wilson, C. R. G.
2013-02-01
Small-scale experiments of volcanic ash particle settling in water have demonstrated that ash particles can either settle slowly and individually, or rapidly and collectively as a gravitationally unstable ash-laden plume. This has important implications for the emplacement of tephra deposits on the seabed. Numerical modelling has the potential to extend the results of laboratory experiments to larger scales and explore the conditions under which plumes may form and persist, but many existing models are computationally restricted by the fixed mesh approaches that they employ. In contrast, this paper presents a new multiphase flow model that uses an adaptive unstructured mesh approach. As a simulation progresses, the mesh is optimized to focus numerical resolution in areas important to the dynamics and decrease it where it is not needed, thereby potentially reducing computational requirements. Model verification is performed using the method of manufactured solutions, which shows the correct solution convergence rates. Model validation and application considers 2-D simulations of plume formation in a water tank which replicate published laboratory experiments. The numerically predicted settling velocities for both individual particles and plumes, as well as instability behaviour, agree well with experimental data and observations. Plume settling is clearly hindered by the presence of a salinity gradient, and its influence must therefore be taken into account when considering particles in bodies of saline water. Furthermore, individual particles settle in the laminar flow regime while plume settling is shown (by plume Reynolds numbers greater than unity) to be in the turbulent flow regime, which has a significant impact on entrainment and settling rates. Mesh adaptivity maintains solution accuracy while providing a substantial reduction in computational requirements when compared to the same simulation performed using a fixed mesh, highlighting the benefits of an
Development of an Unstructured Mesh Code for Flows About Complete Vehicles
NASA Technical Reports Server (NTRS)
Peraire, Jaime; Gupta, K. K. (Technical Monitor)
2001-01-01
This report describes the research work undertaken at the Massachusetts Institute of Technology, under NASA Research Grant NAG4-157. The aim of this research is to identify effective algorithms and methodologies for the efficient and routine solution of flow simulations about complete vehicle configurations. For over ten years we have received support from NASA to develop unstructured mesh methods for Computational Fluid Dynamics. As a result of this effort a methodology based on the use of unstructured adapted meshes of tetrahedra and finite volume flow solvers has been developed. A number of gridding algorithms, flow solvers, and adaptive strategies have been proposed. The most successful algorithms developed from the basis of the unstructured mesh system FELISA. The FELISA system has been extensively for the analysis of transonic and hypersonic flows about complete vehicle configurations. The system is highly automatic and allows for the routine aerodynamic analysis of complex configurations starting from CAD data. The code has been parallelized and utilizes efficient solution algorithms. For hypersonic flows, a version of the code which incorporates real gas effects, has been produced. The FELISA system is also a component of the STARS aeroservoelastic system developed at NASA Dryden. One of the latest developments before the start of this grant was to extend the system to include viscous effects. This required the development of viscous generators, capable of generating the anisotropic grids required to represent boundary layers, and viscous flow solvers. We show some sample hypersonic viscous computations using the developed viscous generators and solvers. Although this initial results were encouraging it became apparent that in order to develop a fully functional capability for viscous flows, several advances in solution accuracy, robustness and efficiency were required. In this grant we set out to investigate some novel methodologies that could lead to the
NASA Astrophysics Data System (ADS)
Pelties, C.; Käser, M.
2010-12-01
We will present recent developments concerning the extensions of the ADER-DG method to solve three dimensional dynamic rupture problems on unstructured tetrahedral meshes. The simulation of earthquake rupture dynamics and seismic wave propagation using a discontinuous Galerkin (DG) method in 2D was recently presented by J. de la Puente et al. (2009). A considerable feature of this study regarding spontaneous rupture problems was the combination of the DG scheme and a time integration method using Arbitrarily high-order DERivatives (ADER) to provide high accuracy in space and time with the discretization on unstructured meshes. In the resulting discrete velocity-stress formulation of the elastic wave equations variables are naturally discontinuous at the interfaces between elements. The so-called Riemann problem can then be solved to obtain well defined values of the variables at the discontinuity itself. This is in particular valid for the fault at which a certain friction law has to be evaluated. Hence, the fault’s geometry is honored by the computational mesh. This way, complex fault planes can be modeled adequately with small elements while fast mesh coarsening is possible with increasing distance from the fault. Due to the strict locality of the scheme using only direct neighbor communication, excellent parallel behavior can be observed. A further advantage of the scheme is that it avoids spurious high-frequency contributions in the slip rate spectra and therefore does not require artificial Kelvin-Voigt damping or filtering of synthetic seismograms. In order to test the accuracy of the ADER-DG method the Southern California Earthquake Center (SCEC) benchmark for spontaneous rupture simulations was employed. Reference: J. de la Puente, J.-P. Ampuero, and M. Käser (2009), Dynamic rupture modeling on unstructured meshes using a discontinuous Galerkin method, JOURNAL OF GEOPHYSICAL RESEARCH, VOL. 114, B10302, doi:10.1029/2008JB006271
Parallel CFD Algorithms for Aerodynamical Flow Solvers on Unstructured Meshes. Parts 1 and 2
NASA Technical Reports Server (NTRS)
Barth, Timothy J.; Kwak, Dochan (Technical Monitor)
1995-01-01
The Advisory Group for Aerospace Research and Development (AGARD) has requested my participation in the lecture series entitled Parallel Computing in Computational Fluid Dynamics to be held at the von Karman Institute in Brussels, Belgium on May 15-19, 1995. In addition, a request has been made from the US Coordinator for AGARD at the Pentagon for NASA Ames to hold a repetition of the lecture series on October 16-20, 1995. I have been asked to be a local coordinator for the Ames event. All AGARD lecture series events have attendance limited to NATO allied countries. A brief of the lecture series is provided in the attached enclosure. Specifically, I have been asked to give two lectures of approximately 75 minutes each on the subject of parallel solution techniques for the fluid flow equations on unstructured meshes. The title of my lectures is "Parallel CFD Algorithms for Aerodynamical Flow Solvers on Unstructured Meshes" (Parts I-II). The contents of these lectures will be largely review in nature and will draw upon previously published work in this area. Topics of my lectures will include: (1) Mesh partitioning algorithms. Recursive techniques based on coordinate bisection, Cuthill-McKee level structures, and spectral bisection. (2) Newton's method for large scale CFD problems. Size and complexity estimates for Newton's method, modifications for insuring global convergence. (3) Techniques for constructing the Jacobian matrix. Analytic and numerical techniques for Jacobian matrix-vector products, constructing the transposed matrix, extensions to optimization and homotopy theories. (4) Iterative solution algorithms. Practical experience with GIVIRES and BICG-STAB matrix solvers. (5) Parallel matrix preconditioning. Incomplete Lower-Upper (ILU) factorization, domain-decomposed ILU, approximate Schur complement strategies.
Terrain-driven unstructured mesh development through semi-automatic vertical feature extraction
NASA Astrophysics Data System (ADS)
Bilskie, Matthew V.; Coggin, David; Hagen, Scott C.; Medeiros, Stephen C.
2015-12-01
A semi-automated vertical feature terrain extraction algorithm is described and applied to a two-dimensional, depth-integrated, shallow water equation inundation model. The extracted features describe what are commonly sub-mesh scale elevation details (ridge and valleys), which may be ignored in standard practice because adequate mesh resolution cannot be afforded. The extraction algorithm is semi-automated, requires minimal human intervention, and is reproducible. A lidar-derived digital elevation model (DEM) of coastal Mississippi and Alabama serves as the source data for the vertical feature extraction. Unstructured mesh nodes and element edges are aligned to the vertical features and an interpolation algorithm aimed at minimizing topographic elevation error assigns elevations to mesh nodes via the DEM. The end result is a mesh that accurately represents the bare earth surface as derived from lidar with element resolution in the floodplain ranging from 15 m to 200 m. To examine the influence of the inclusion of vertical features on overland flooding, two additional meshes were developed, one without crest elevations of the features and another with vertical features withheld. All three meshes were incorporated into a SWAN+ADCIRC model simulation of Hurricane Katrina. Each of the three models resulted in similar validation statistics when compared to observed time-series water levels at gages and post-storm collected high water marks. Simulated water level peaks yielded an R2 of 0.97 and upper and lower 95% confidence interval of ∼ ± 0.60 m. From the validation at the gages and HWM locations, it was not clear which of the three model experiments performed best in terms of accuracy. Examination of inundation extent among the three model results were compared to debris lines derived from NOAA post-event aerial imagery, and the mesh including vertical features showed higher accuracy. The comparison of model results to debris lines demonstrates that additional
Failure of Anisotropic Unstructured Mesh Adaption Based on Multidimensional Residual Minimization
NASA Technical Reports Server (NTRS)
Wood, William A.; Kleb, William L.
2003-01-01
An automated anisotropic unstructured mesh adaptation strategy is proposed, implemented, and assessed for the discretization of viscous flows. The adaption criteria is based upon the minimization of the residual fluctuations of a multidimensional upwind viscous flow solver. For scalar advection, this adaption strategy has been shown to use fewer grid points than gradient based adaption, naturally aligning mesh edges with discontinuities and characteristic lines. The adaption utilizes a compact stencil and is local in scope, with four fundamental operations: point insertion, point deletion, edge swapping, and nodal displacement. Evaluation of the solution-adaptive strategy is performed for a two-dimensional blunt body laminar wind tunnel case at Mach 10. The results demonstrate that the strategy suffers from a lack of robustness, particularly with regard to alignment of the bow shock in the vicinity of the stagnation streamline. In general, constraining the adaption to such a degree as to maintain robustness results in negligible improvement to the solution. Because the present method fails to consistently or significantly improve the flow solution, it is rejected in favor of simple uniform mesh refinement.
NASA Technical Reports Server (NTRS)
Jothiprasad, Giridhar; Mavriplis, Dimitri J.; Caughey, David A.
2002-01-01
The rapid increase in available computational power over the last decade has enabled higher resolution flow simulations and more widespread use of unstructured grid methods for complex geometries. While much of this effort has been focused on steady-state calculations in the aerodynamics community, the need to accurately predict off-design conditions, which may involve substantial amounts of flow separation, points to the need to efficiently simulate unsteady flow fields. Accurate unsteady flow simulations can easily require several orders of magnitude more computational effort than a corresponding steady-state simulation. For this reason, techniques for improving the efficiency of unsteady flow simulations are required in order to make such calculations feasible in the foreseeable future. The purpose of this work is to investigate possible reductions in computer time due to the choice of an efficient time-integration scheme from a series of schemes differing in the order of time-accuracy, and by the use of more efficient techniques to solve the nonlinear equations which arise while using implicit time-integration schemes. This investigation is carried out in the context of a two-dimensional unstructured mesh laminar Navier-Stokes solver.
NASA Technical Reports Server (NTRS)
Barth, Timothy J.; Kutler, Paul (Technical Monitor)
1998-01-01
Several stabilized demoralization procedures for conservation law equations on triangulated domains will be considered. Specifically, numerical schemes based on upwind finite volume, fluctuation splitting, Galerkin least-squares, and space discontinuous Galerkin demoralization will be considered in detail. A standard energy analysis for several of these methods will be given via entropy symmetrization. Next, we will present some relatively new theoretical results concerning congruence relationships for left or right symmetrized equations. These results suggest new variants of existing FV, DG, GLS, and FS methods which are computationally more efficient while retaining the pleasant theoretical properties achieved by entropy symmetrization. In addition, the task of Jacobean linearization of these schemes for use in Newton's method is greatly simplified owing to exploitation of exact symmetries which exist in the system. The FV, FS and DG schemes also permit discrete maximum principle analysis and enforcement which greatly adds to the robustness of the methods. Discrete maximum principle theory will be presented for general finite volume approximations on unstructured meshes. Next, we consider embedding these nonlinear space discretizations into exact and inexact Newton solvers which are preconditioned using a nonoverlapping (Schur complement) domain decomposition technique. Elements of nonoverlapping domain decomposition for elliptic problems will be reviewed followed by the present extension to hyperbolic and elliptic-hyperbolic problems. Other issues of practical relevance such the meshing of geometries, code implementation, turbulence modeling, global convergence, etc, will. be addressed as needed.
Unstructured-mesh modeling of the Congo river-to-sea continuum
NASA Astrophysics Data System (ADS)
Bars, Yoann Le; Vallaeys, Valentin; Deleersnijder, Éric; Hanert, Emmanuel; Carrere, Loren; Channelière, Claire
2016-04-01
With the second largest outflow in the world and one of the widest hydrological basins, the Congo River is of a major importance both locally and globally. However, relatively few studies have been conducted on its hydrology, as compared to other great rivers such as the Amazon, Nile, Yangtze, or Mississippi. The goal of this study is therefore to help fill this gap and provide the first high-resolution simulation of the Congo river-estuary-coastal sea continuum. To this end, we are using a discontinuous-Galerkin finite element marine model that solves the two-dimensional depth-averaged shallow water equations on an unstructured mesh. To ensure a smooth transition from river to coastal sea, we have considered a model that encompasses both hydrological and coastal ocean processes. An important difficulty in setting up this model was to find data to parameterize and validate it, as it is a rather remote and understudied area. Therefore, an important effort in this study has been to establish a methodology to take advantage of all the data sources available including nautical charts that had to be digitalized. The model surface elevation has then been validated with respect to an altimetric database. Model results suggest the existence of gyres in the vicinity of the river mouth that have never been documented before. The effect of those gyres on the Congo River dynamics has been further investigated by simulating the transport of Lagrangian particles and computing the water age.
3D treatment planning and intensity-modulated radiation therapy.
Purdy, J A
1999-10-01
Three-dimensional (3D) image-based treatment planning and new delivery technologies have spurred the implementation of external beam radiation therapy techniques, in which the high-dose region is conformed much more closely to the target volume than previously possible, thus reducing the volume of normal tissues receiving a high dose. This form of external beam irradiation is referred to as 3D conformal radiation therapy (3DCRT). 3DCRT is not just an add-on to the current radiation oncology process; it represents a radical change in practice, particularly for the radiation oncologist. Defining target volumes and organs at risk in 3D by drawing contours on CT images on a slice-by-slice basis, as opposed to drawing beam portals on a simulator radiograph, can be challenging, because radiation oncologists are generally not well trained in cross-sectional imaging. Currently, the 3DCRT approach will increase the time and effort required by physicians inexperienced with 3D treatment planning. Intensity-modulated radiation therapy (IMRT) is a more advanced form of 3DCRT, but there is considerable developmental work remaining. The instrumentation and methods used for IMRT quality assurance procedures and testing are not well established. Computer optimization cost functions are too simplistic, and thus time-consuming. Subjective plan evaluation by the radiation oncologist is still the norm. In addition, many fundamental questions regarding IMRT remain unanswered. For example, the radiobiophysical consequences of altered time-dose-fraction are unknown. Also, the fact that there is much greater dose heterogeneity for both the target and normal critical structures with IMRT compared to traditional irradiation techniques challenges current radiation oncology planning principles. However, this new process of planning and treatment delivery shows significant potential for improving the therapeutic ratio. In addition, while inefficient today, these systems, when fully developed
NASA Astrophysics Data System (ADS)
Pan, Liang; Xu, Kun
2016-08-01
In this paper, for the first time a third-order compact gas-kinetic scheme is proposed on unstructured meshes for the compressible viscous flow computations. The possibility to design such a third-order compact scheme is due to the high-order gas evolution model, where a time-dependent gas distribution function at cell interface not only provides the fluxes across a cell interface, but also presents a time accurate solution for flow variables at cell interface. As a result, both cell averaged and cell interface flow variables can be used for the initial data reconstruction at the beginning of next time step. A weighted least-square procedure has been used for the initial reconstruction. Therefore, a compact third-order gas-kinetic scheme with the involvement of neighboring cells only can be developed on unstructured meshes. In comparison with other conventional high-order schemes, the current method avoids the Gaussian point integration for numerical fluxes along a cell interface and the multi-stage Runge-Kutta method for temporal accuracy. The third-order compact scheme is numerically stable under CFL condition CFL ≈ 0.5. Due to its multidimensional gas-kinetic formulation and the coupling of inviscid and viscous terms, even with unstructured meshes, the boundary layer solution and vortex structure can be accurately captured by the current scheme. At the same time, the compact scheme can capture strong shocks as well.
NASA Astrophysics Data System (ADS)
Schubert, Jochen E.; Sanders, Brett F.; Smith, Martin J.; Wright, Nigel G.
2008-12-01
Urban flood inundation modeling with a hydrodynamic flow solver is addressed in this paper, focusing on strategies to effectively integrate geospatial data for unstructured mesh generation, building representation and flow resistance parameterization. Data considered include Light Detection and Ranging (LiDAR) terrain height surveys, aerial imagery and vector datasets such as building footprint polygons. First, a unstructured mesh-generation technique we term the building-hole method (BH) is developed whereby building footprint data define interior domain boundaries or mesh holes. A wall boundary condition depicts the impact of buildings on flood hydrodynamics. BH provides an alternative to the more commonly used method of raising terrain heights where buildings coincide with the mesh. We term this the building-block method (BB). Application of BH and BB to a flooding site in Glasgow, Scotland identifies a number of tradeoffs to consider at resolutions ranging from 1 to 5 m. At fine resolution, BH is shown to be similarly accurate but execute faster than BB. And at coarse resolution, BH is shown to preserve the geometry of buildings and maintain better accuracy than BB, but requires a longer run time. Meshes that ignore buildings completely ( no-building method or NB) also support surprisingly good flood inundation predictions at coarse resolution compared to BH and BB. NB also supports faster execution times than BH at coarse resolution because the latter uses localized refinements that mandate a greater number of computational cells. However, with mesh refinement, NB converges to a different (and presumably less-accurate) solution compared to BH and BB. Using the same test conditions, Hunter et al. [Hunter NM, Bates PD, Neelz S, Pender G, Villanueva I, Wright NG, Liang D, et al. Benchmarking 2D hydraulic models for urban flood simulations. ICE J Water Manage 2008;161(1):13-30] compared the performance of dynamic-wave and diffusive-wave models and reported that
Scalable direct Vlasov solver with discontinuous Galerkin method on unstructured mesh.
Xu, J.; Ostroumov, P. N.; Mustapha, B.; Nolen, J.
2010-12-01
This paper presents the development of parallel direct Vlasov solvers with discontinuous Galerkin (DG) method for beam and plasma simulations in four dimensions. Both physical and velocity spaces are in two dimesions (2P2V) with unstructured mesh. Contrary to the standard particle-in-cell (PIC) approach for kinetic space plasma simulations, i.e., solving Vlasov-Maxwell equations, direct method has been used in this paper. There are several benefits to solving a Vlasov equation directly, such as avoiding noise associated with a finite number of particles and the capability to capture fine structure in the plasma. The most challanging part of a direct Vlasov solver comes from higher dimensions, as the computational cost increases as N{sup 2d}, where d is the dimension of the physical space. Recently, due to the fast development of supercomputers, the possibility has become more realistic. Many efforts have been made to solve Vlasov equations in low dimensions before; now more interest has focused on higher dimensions. Different numerical methods have been tried so far, such as the finite difference method, Fourier Spectral method, finite volume method, and spectral element method. This paper is based on our previous efforts to use the DG method. The DG method has been proven to be very successful in solving Maxwell equations, and this paper is our first effort in applying the DG method to Vlasov equations. DG has shown several advantages, such as local mass matrix, strong stability, and easy parallelization. These are particularly suitable for Vlasov equations. Domain decomposition in high dimensions has been used for parallelization; these include a highly scalable parallel two-dimensional Poisson solver. Benchmark results have been shown and simulation results will be reported.
Modeling radiative transfer in heterogeneous 3D vegetation canopies
NASA Astrophysics Data System (ADS)
Gastellu-Etchegorry, J. P.; Demarez, V.; Pinel, Veronique; Zagolski, Francis
1995-01-01
The DART (discrete anisotropic radiative transfer) model simulates radiative transfer in heterogeneous 3-D scenes; here, a forest plantation. Similarly to Kimes model, the scene is divided into a rectangular cell matrix, i.e., a building block for simulating larger scenes. Cells are parallelipipedic. The scene encompasses different landscape features (i.e., trees with leaves and trunks, grass, water, and soil) with specific optical (reflectance, transmittance) and structural (LAI, LAD) characteristics. Radiation directions are subdivided into contiguous sectors with possibly uneven spacing. Topography, hot spot, and multiple interactions (scattering, attenuation) within cells are modeled. Two major steps are distinguished: (1) Illumination of cells by direct sun radiation. Actual locations of within cell scattering are determined for optimizing scattering computation. (2) Interception and scattering of previously scattered radiation. Diffuse atmospheric radiation is input at this level. Multiple scattering is represented with a spherical harmonic decomposition, for reducing data volume. The model iterates on step 2 for all cells, and stops with the energetic equilibrium. This model predicts the bi-directional reflectance factors of 3D canopies, with each scene component contribution; it was successfully tested with homogeneous covers. It gives also the radiation regime with canopies, and consequently some information about volume distribution of photosynthesis rates and primary production.
VISRAD, 3-D Target Design and Radiation Simulation Code
NASA Astrophysics Data System (ADS)
Golovkin, Igor; Macfarlane, Joseph; Golovkina, Viktoriya
2016-10-01
The 3-D view factor code VISRAD is widely used in designing HEDP experiments at major laser and pulsed-power facilities, including NIF, OMEGA, OMEGA-EP, ORION, LMJ, Z, and PLX. It simulates target designs by generating a 3-D grid of surface elements, utilizing a variety of 3-D primitives and surface removal algorithms, and can be used to compute the radiation flux throughout the surface element grid by computing element-to-element view factors and solving power balance equations. Target set-up and beam pointing are facilitated by allowing users to specify positions and angular orientations using a variety of coordinates systems (e.g., that of any laser beam, target component, or diagnostic port). Analytic modeling for laser beam spatial profiles for OMEGA DPPs and NIF CPPs is used to compute laser intensity profiles throughout the grid of surface elements. We will discuss recent improvements to the software package and plans for future developments.
NASA Technical Reports Server (NTRS)
Marvriplis, D. J.; Venkatakrishnan, V.
1995-01-01
An agglomeration multigrid strategy is developed and implemented for the solution of three-dimensional steady viscous flows. The method enables convergence acceleration with minimal additional memory overheads, and is completely automated, in that it can deal with grids of arbitrary construction. The multigrid technique is validated by comparing the delivered convergence rates with those obtained by a previously developed overset-mesh multigrid approach, and by demonstrating grid independent convergence rates for aerodynamic problems on very large grids. Prospects for further increases in multigrid efficiency for high-Reynolds number viscous flows on highly stretched meshes are discussed.
NASA Technical Reports Server (NTRS)
Woodard, Paul R.; Batina, John T.; Yang, Henry T. Y.
1992-01-01
Quality assessment procedures are described for two-dimensional unstructured meshes. The procedures include measurement of minimum angles, element aspect ratios, stretching, and element skewness. Meshes about the ONERA M6 wing and the Boeing 747 transport configuration are generated using an advancing front method grid generation package of programs. Solutions of Euler's equations for these meshes are obtained at low angle-of-attack, transonic conditions. Results for these cases, obtained as part of a validation study demonstrate accuracy of an implicit upwind Euler solution algorithm.
NASA Technical Reports Server (NTRS)
Woodard, Paul R.; Yang, Henry T. Y.; Batina, John T.
1992-01-01
Quality assessment procedures are described for two-dimensional and three-dimensional unstructured meshes. The procedures include measurement of minimum angles, element aspect ratios, stretching, and element skewness. Meshes about the ONERA M6 wing and the Boeing 747 transport configuration are generated using an advancing front method grid generation package of programs. Solutions of Euler's equations for these meshes are obtained at low angle-of-attack, transonic conditions. Results for these cases, obtained as part of a validation study demonstrate the accuracy of an implicit upwind Euler solution algorithm.
Computing Radiative Transfer in a 3D Medium
NASA Technical Reports Server (NTRS)
Von Allmen, Paul; Lee, Seungwon
2012-01-01
A package of software computes the time-dependent propagation of a narrow laser beam in an arbitrary three- dimensional (3D) medium with absorption and scattering, using the transient-discrete-ordinates method and a direct integration method. Unlike prior software that utilizes a Monte Carlo method, this software enables simulation at very small signal-to-noise ratios. The ability to simulate propagation of a narrow laser beam in a 3D medium is an improvement over other discrete-ordinate software. Unlike other direct-integration software, this software is not limited to simulation of propagation of thermal radiation with broad angular spread in three dimensions or of a laser pulse with narrow angular spread in two dimensions. Uses for this software include (1) computing scattering of a pulsed laser beam on a material having given elastic scattering and absorption profiles, and (2) evaluating concepts for laser-based instruments for sensing oceanic turbulence and related measurements of oceanic mixed-layer depths. With suitable augmentation, this software could be used to compute radiative transfer in ultrasound imaging in biological tissues, radiative transfer in the upper Earth crust for oil exploration, and propagation of laser pulses in telecommunication applications.
3D measurement of absolute radiation dose in grid therapy
NASA Astrophysics Data System (ADS)
Trapp, J. V.; Warrington, A. P.; Partridge, M.; Philps, A.; Leach, M. O.; Webb, S.
2004-01-01
Spatially fractionated radiotherapy through a grid is a concept which has a long history and was routinely used in orthovoltage radiation therapy in the middle of last century to minimize damage to the skin and subcutaneous tissue. With the advent of megavoltage radiotherapy and its skin sparing effects the use of grids in radiotherapy declined in the 1970s. However there has recently been a revival of the technique for use in palliative treatments with a single fraction of 10 to 20 Gy. In this work the absolute 3D dose distribution in a grid irradiation is measured for photons using a combination of film and gel dosimetry.
Towards a 3D Space Radiation Transport Code
NASA Technical Reports Server (NTRS)
Wilson, J. W.; Tripathl, R. K.; Cicomptta, F. A.; Heinbockel, J. H.; Tweed, J.
2002-01-01
High-speed computational procedures for space radiation shielding have relied on asymptotic expansions in terms of the off-axis scatter and replacement of the general geometry problem by a collection of flat plates. This type of solution was derived for application to human rated systems in which the radius of the shielded volume is large compared to the off-axis diffusion limiting leakage at lateral boundaries. Over the decades these computational codes are relatively complete and lateral diffusion effects are now being added. The analysis for developing a practical full 3D space shielding code is presented.
NASA Astrophysics Data System (ADS)
Greene, Patrick; Nourgaliev, Robert; Schofield, Sam
2015-11-01
A new sharp high-order interface tracking method for multi-material flow problems on unstructured meshes is presented. The method combines the marker-tracking algorithm with a discontinuous Galerkin (DG) level set method to implicitly track interfaces. DG projection is used to provide a mapping from the Lagrangian marker field to the Eulerian level set field. For the level set re-distancing, we developed a novel marching method that takes advantage of the unique features of the DG representation of the level set. The method efficiently marches outward from the zero level set with values in the new cells being computed solely from cell neighbors. Results are presented for a number of different interface geometries including ones with sharp corners and multiple hierarchical level sets. The method can robustly handle the level set discontinuities without explicit utilization of solution limiters. Results show that the expected high order (3rd and higher) of convergence for the DG representation of the level set is obtained for smooth solutions on unstructured meshes. High-order re-distancing on irregular meshes is a must for applications were the interfacial curvature is important for underlying physics, such as surface tension, wetting and detonation shock dynamics. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344. Information management release number LLNL-ABS-675636.
NASA Technical Reports Server (NTRS)
Prabhu, Ramadas K.
1994-01-01
This paper presents a nonequilibrium flow solver, implementation of the algorithm on unstructured meshes, and application to hypersonic flow past blunt bodies. Air is modeled as a mixture of five chemical species, namely O2, N2, O, NO, and N, having two temperatures namely translational and vibrational. The solution algorithm is a cell centered, point implicit upwind scheme that employs Roe's flux difference splitting technique. Implementation of this algorithm on unstructured meshes is described. The computer code is applied to solve Mach 15 flow with and without a Type IV shock interference on a cylindrical body of 2.5mm radius representing a cowl lip. Adaptively generated meshes are employed, and the meshes are refined several times until the solution exhibits detailed flow features and surface pressure and heat flux distributions. Effects of a catalytic wall on surface heat flux distribution are studied. For the Mach 15 Type IV shock interference flow, present results showed a peak heat flux of 544 MW/m2 for a fully catalytic wall and 431 MW/m(exp 2) for a noncatalytic wall. Some of the results are compared with available computational data.
Photon Scattering in 3D Radiative MHD Simulations
NASA Astrophysics Data System (ADS)
Hayek, Wolfgang
2009-09-01
Recent results from 3D time-dependent radiative hydrodynamic simulations of stellar atmospheres are presented, which include the effects of coherent scattering in the radiative transfer treatment. Rayleigh scattering and electron scattering are accounted for in the source function, requiring an iterative solution of the transfer equation. Opacities and scattering coefficients are treated in the multigroup opacity approximation. The impact of scattering on the horizontal mean temperature structure is investigated, which is an important diagnostic for model atmospheres, with implications for line formation and stellar abundance measurements. We find that continuum scattering is not important for the atmosphere of a metal-poor Sun with metailicity [Fe/H] = -3.0, similar to the previously investigated photosphere at solar metallicity.
Numerical Modelling of Volcanic Ash Settling in Water Using Adaptive Unstructured Meshes
NASA Astrophysics Data System (ADS)
Jacobs, C. T.; Collins, G. S.; Piggott, M. D.; Kramer, S. C.; Wilson, C. R.
2011-12-01
At the bottom of the world's oceans lies layer after layer of ash deposited from past volcanic eruptions. Correct interpretation of these layers can provide important constraints on the duration and frequency of volcanism, but requires a full understanding of the complex multi-phase settling and deposition process. Analogue experiments of tephra settling through a tank of water demonstrate that small ash particles can either settle individually, or collectively as a gravitationally unstable ash-laden plume. These plumes are generated when the concentration of particles exceeds a certain threshold such that the density of the tephra-water mixture is sufficiently large relative to the underlying particle-free water for a gravitational Rayleigh-Taylor instability to develop. These ash-laden plumes are observed to descend as a vertical density current at a velocity much greater than that of single particles, which has important implications for the emplacement of tephra deposits on the seabed. To extend the results of laboratory experiments to large scales and explore the conditions under which vertical density currents may form and persist, we have developed a multi-phase extension to Fluidity, a combined finite element / control volume CFD code that uses adaptive unstructured meshes. As a model validation, we present two- and three-dimensional simulations of tephra plume formation in a water tank that replicate laboratory experiments (Carey, 1997, doi:10.1130/0091-7613(1997)025<0839:IOCSOT>2.3.CO;2). An inflow boundary condition at the top of the domain allows particles to flux in at a constant rate of 0.472 gm-2s-1, forming a near-surface layer of tephra particles, which initially settle individually at the predicted Stokes velocity of 1.7 mms-1. As more tephra enters the water and the particle concentration increases, the layer eventually becomes unstable and plumes begin to form, descending with velocities more than ten times greater than those of individual
NASA Astrophysics Data System (ADS)
Blachère, F.; Turpault, R.
2016-06-01
The objective of this work is to design explicit finite volumes schemes for specific systems of conservations laws with stiff source terms, which degenerate into diffusion equations. We propose a general framework to design an asymptotic preserving scheme, that is stable and consistent under a classical hyperbolic CFL condition in both hyperbolic and diffusive regime, for any two-dimensional unstructured mesh. Moreover, the scheme developed also preserves the set of admissible states, which is mandatory to keep physical solutions in stiff configurations. This construction is achieved by using a non-linear scheme as a target scheme for the diffusive equation, which gives the form of the global scheme for the complete system of conservation laws. Numerical results are provided to validate the scheme in both regimes.
NASA Astrophysics Data System (ADS)
Li, Weidong; Luo, Li-Shi
2016-12-01
This work proposes a fully implicit lattice Boltzmann (LB) scheme based on finite-volume (FV) discretization on arbitrary unstructured meshes. The linear system derived from the finite-volume lattice Boltzmann equation (LBE) is solved by the block lower-upper (BLU) symmetric-Gauss-Seidel (SGS) algorithm. The proposed implicit FV-LB scheme is efficient and robust, and has a low-storage requirement. The effectiveness and efficiency of the proposed implicit FV-LB scheme are validated and verified by the simulations of three test cases in two dimensions: (a) the laminar Blasius flow over a flat plate with Re =105; (b) the steady viscous flow past a circular cylinder with Re = 10, 20, and 40; and (c) the inviscid flow past a circular cylinder. The proposed implicit FV-LB scheme is shown to be not only effective and efficient for simulations of steady viscous flows, but also robust and efficient for simulations of inviscid flows in particular.
NASA Astrophysics Data System (ADS)
Madura, Thomas; Clementel, Nicola; Kruip, Chael; Icke, Vincent; Gull, Theodore
2014-09-01
We present the first results of full 3D radiative transfer simulations of the colliding stellar winds in a massive binary system. We accomplish this by applying the SIMPLEX algorithm for 3D radiative transfer on an unstructured Delaunay grid to recent 3D smoothed particle hydrodynamics (SPH) simulations of the colliding winds in the binary system η Carinae. We use SIMPLEX to obtain detailed ionization fractions of hydrogen and helium, in 3D, at the resolution of the original SPH simulations. We show how the SIMPLEX simulations can be used to generate synthetic spectral data cubes for comparison to data obtained with the Hubble Space Telescope (HST)/Space Telescope Imaging Spectrograph as part of a multi-cycle program to map changes in η Car's extended interacting wind structures across one binary cycle. Comparison of the HST observations to the SIMPLEX models can help lead to more accurate constraints on the orbital, stellar, and wind parameters of the η Car system, such as the primary's mass-loss rate and the companion's temperature and luminosity. While we initially focus specifically on the η Car binary, the numerical methods employed can be applied to numerous other colliding wind (WR140, WR137, WR19) and dusty 'pinwheel' (WR104, WR98a) binary systems. One of the biggest remaining mysteries is how dust can form and survive in such systems that contain a hot, luminous O star. Coupled with 3D hydrodynamical simulations, SIMPLEX simulations have the potential to help determine the regions where dust can form and survive in these unique objects.
NASA Astrophysics Data System (ADS)
Canestrelli, Alberto; Dumbser, Michael; Siviglia, Annunziato; Toro, Eleuterio F.
2010-03-01
In this paper, we study the numerical approximation of the two-dimensional morphodynamic model governed by the shallow water equations and bed-load transport following a coupled solution strategy. The resulting system of governing equations contains non-conservative products and it is solved simultaneously within each time step. The numerical solution is obtained using a new high-order accurate centered scheme of the finite volume type on unstructured meshes, which is an extension of the one-dimensional PRICE-C scheme recently proposed in Canestrelli et al. (2009) [5]. The resulting first-order accurate centered method is then extended to high order of accuracy in space via a high order WENO reconstruction technique and in time via a local continuous space-time Galerkin predictor method. The scheme is applied to the shallow water equations and the well-balanced properties of the method are investigated. Finally, we apply the new scheme to different test cases with both fixed and movable bed. An attractive future of the proposed method is that it is particularly suitable for engineering applications since it allows practitioners to adopt the most suitable sediment transport formula which better fits the field data.
NASA Astrophysics Data System (ADS)
Soares Frazão, Sandra; Guinot, Vincent
2007-01-01
This paper presents a new approach to MUSCL reconstruction for solving the shallow-water equations on two-dimensional unstructured meshes. The approach takes advantage of the particular structure of the shallow-water equations. Indeed, their hyperbolic nature allows the flow variables to be expressed as a linear combination of the eigenvectors of the system. The particularity of the shallow-water equations is that the coefficients of this combination only depend upon the water depth. Reconstructing only the water depth with second-order accuracy and using only a first-order reconstruction for the flow velocity proves to be as accurate as the classical MUSCL approach. The method also appears to be more robust in cases with very strong depth gradients such as the propagation of a wave on a dry bed. Since only one reconstruction is needed (against three reconstructions in the MUSCL approach) the EVR method is shown to be 1.4-5 times as fast as the classical MUSCL scheme, depending on the computational application.
NASA Astrophysics Data System (ADS)
Alvarez Laguna, A.; Lani, A.; Deconinck, H.; Mansour, N. N.; Poedts, S.
2016-08-01
We present a Finite Volume scheme for solving Maxwell's equations coupled to magnetized multi-fluid plasma equations for reactive and collisional partially ionized flows on unstructured meshes. The inclusion of the displacement current allows for studying electromagnetic wave propagation in a plasma as well as charge separation effects beyond the standard magnetohydrodynamics (MHD) description, however, it leads to a very stiff system with characteristic velocities ranging from the speed of sound of the fluids up to the speed of light. In order to control the fulfillment of the elliptical constraints of the Maxwell's equations, we use the hyperbolic divergence cleaning method. In this paper, we extend the latter method applying the CIR scheme with scaled numerical diffusion in order to balance those terms with the Maxwell flux vectors. For the fluids, we generalize the AUSM+-up to multiple fluids of different species within the plasma. The fully implicit second-order method is first verified on the Hartmann flow (including comparison with its analytical solution), two ideal MHD cases with strong shocks, namely, Orszag-Tang and the MHD rotor, then validated on a much more challenging case, representing a two-fluid magnetic reconnection under solar chromospheric conditions. For the latter case, a comparison with pioneering results available in literature is provided.
NASA Astrophysics Data System (ADS)
Su, Xiaohui; Cao, Yuanwei; Zhao, Yong
2016-06-01
In this paper, an unstructured mesh Arbitrary Lagrangian-Eulerian (ALE) incompressible flow solver is developed to investigate the aerodynamics of insect hovering flight. The proposed finite-volume ALE Navier-Stokes solver is based on the artificial compressibility method (ACM) with a high-resolution method of characteristics-based scheme on unstructured grids. The present ALE model is validated and assessed through flow passing over an oscillating cylinder. Good agreements with experimental results and other numerical solutions are obtained, which demonstrates the accuracy and the capability of the present model. The lift generation mechanisms of 2D wing in hovering motion, including wake capture, delayed stall, rapid pitch, as well as clap and fling are then studied and illustrated using the current ALE model. Moreover, the optimized angular amplitude in symmetry model, 45°, is firstly reported in details using averaged lift and the energy power method. Besides, the lift generation of complete cyclic clap and fling motion, which is simulated by few researchers using the ALE method due to large deformation, is studied and clarified for the first time. The present ALE model is found to be a useful tool to investigate lift force generation mechanism for insect wing flight.
Howard Barker; Jason Cole
2012-05-17
Utilization of cloud-resolving models and multi-dimensional radiative transfer models to investigate the importance of 3D radiation effects on the numerical simulation of cloud fields and their properties.
Parameterization and Analysis of 3-D Solar Radiative Transfer in Clouds: Final Report
Jerry Y. Harrington
2012-09-21
This document reports on the research that we have done over the course of our two-year project. The report also covers the research done on this project during a 1 year no-cost extension of the grant. Our work has had two main, inter-related thrusts: The first thrust was to characterize the response of stratocumulus cloud structure and dynamics to systematic changes in cloud infrared radiative cooling and solar heating using one-dimensional radiative transfer models. The second was to couple a three-dimensional (3-D) solar radiative transfer model to the Large Eddy Simulation (LES) model that we use to simulate stratocumulus. The purpose of the studies with 3-D radiative transfer was to examine the possible influences of 3-D photon transport on the structure, evolution, and radiative properties of stratocumulus. While 3-D radiative transport has been examined in static cloud environments, few studies have attempted to examine whether the 3-D nature of radiative absorption and emission influence the structure and evolution of stratocumulus. We undertook this dual approach because only a small number of LES simulations with the 3-D radiative transfer model are possible due to the high computational costs. Consequently, LES simulations with a 1-D radiative transfer solver were used in order to examine the portions of stratocumulus parameter space that may be most sensitive to perturbations in the radiative fields. The goal was then to explore these sensitive regions with LES using full 3-D radiative transfer. Our overall goal was to discover whether 3-D radiative processes alter cloud structure and evolution, and whether this may have any indirect implications for cloud radiative properties. In addition, we collaborated with Dr. Tamas Varni, providing model output fields for his attempt at parameterizing 3-D radiative effects for cloud models.
An Assessment of Linear Versus Non-linear Multigrid Methods for Unstructured Mesh Solvers
2001-05-01
problems is investigated. The first case consists of a transient radiation-diffusion problem for which an exact linearization is available, while the...to the Jacobian of a second-order accurate discretization. When an exact linearization is employed, the linear and non-linear multigrid methods
Radiation Effects in 3D Integrated SOl SRAM Circuits
2011-08-23
Comparing Neutrons and Protons Data Monoenergetic neutrons and protons are used to characterize single event effects in electronics circuits, and are...for proton irradiation with energies between 4.8 and 500 MeV. Results are compared with 14-MeV neutron irradiation. Single event upset cross-section...fabricating circuits for space applications. singIe event effects, SOl, fully depleted, 3D integration, neutron , protons, upset cross-section U U U U SAR
Alexander S. Rattner; Donna Post Guillen; Alark Joshi
2012-12-01
Photo- and physically-realistic techniques are often insufficient for visualization of simulation results, especially for 3D and time-varying datasets. Substantial research efforts have been dedicated to the development of non-photorealistic and illustration-inspired visualization techniques for compact and intuitive presentation of such complex datasets. While these efforts have yielded valuable visualization results, a great deal of work has been reproduced in studies as individual research groups often develop purpose-built platforms. Additionally, interoperability between illustrative visualization software is limited due to specialized processing and rendering architectures employed in different studies. In this investigation, a generalized framework for illustrative visualization is proposed, and implemented in marmotViz, a ParaView plugin, enabling its use on variety of computing platforms with various data file formats and mesh geometries. Detailed descriptions of the region-of-interest identification and feature-tracking algorithms incorporated into this tool are provided. Additionally, implementations of multiple illustrative effect algorithms are presented to demonstrate the use and flexibility of this framework. By providing a framework and useful underlying functionality, the marmotViz tool can act as a springboard for future research in the field of illustrative visualization.
Rattner, Alexander S.; Guillen, Donna Post; Joshi, Alark; ...
2016-03-17
Photo- and physically realistic techniques are often insufficient for visualization of fluid flow simulations, especially for 3D and time-varying studies. Substantial research effort has been dedicated to the development of non-photorealistic and illustration-inspired visualization techniques for compact and intuitive presentation of such complex datasets. However, a great deal of work has been reproduced in this field, as many research groups have developed specialized visualization software. Additionally, interoperability between illustrative visualization software is limited due to diverse processing and rendering architectures employed in different studies. In this investigation, a framework for illustrative visualization is proposed, and implemented in MarmotViz, a ParaViewmore » plug-in, enabling its use on a variety of computing platforms with various data file formats and mesh geometries. Region-of-interest identification and feature-tracking algorithms incorporated into this tool are described. Implementations of multiple illustrative effect algorithms are also presented to demonstrate the use and flexibility of this framework. Here, by providing an integrated framework for illustrative visualization of CFD data, MarmotViz can serve as a valuable asset for the interpretation of simulations of ever-growing scale.« less
Rattner, Alexander S.; Guillen, Donna Post; Joshi, Alark; Garimella, Srinivas
2016-03-17
Photo- and physically realistic techniques are often insufficient for visualization of fluid flow simulations, especially for 3D and time-varying studies. Substantial research effort has been dedicated to the development of non-photorealistic and illustration-inspired visualization techniques for compact and intuitive presentation of such complex datasets. However, a great deal of work has been reproduced in this field, as many research groups have developed specialized visualization software. Additionally, interoperability between illustrative visualization software is limited due to diverse processing and rendering architectures employed in different studies. In this investigation, a framework for illustrative visualization is proposed, and implemented in MarmotViz, a ParaView plug-in, enabling its use on a variety of computing platforms with various data file formats and mesh geometries. Region-of-interest identification and feature-tracking algorithms incorporated into this tool are described. Implementations of multiple illustrative effect algorithms are also presented to demonstrate the use and flexibility of this framework. Here, by providing an integrated framework for illustrative visualization of CFD data, MarmotViz can serve as a valuable asset for the interpretation of simulations of ever-growing scale.
Radiation Transport in 3D Heterogeneous Materials: DNS
Graziani, F
2003-07-09
In order to develop a phenomenological approach to transport in 3D heterogeneous media, we have performed direct numerical simulation studies. Using an algorithm based on the lattice random walk to generate random media, we have performed radiographic shots of the sample and digitized both the chord length and optical depth distributions. The optical depth distribution is then used to compute an effective mean free path. As theory predicts, the atomically averaged mean free path is always a minimum value. We have also demonstrated a dependency of mean free path on the distribution of random material.
Parameterization and analysis of 3-D radiative transfer in clouds
Varnai, Tamas
2012-03-16
This report provides a summary of major accomplishments from the project. The project examines the impact of radiative interactions between neighboring atmospheric columns, for example clouds scattering extra sunlight toward nearby clear areas. While most current cloud models don't consider these interactions and instead treat sunlight in each atmospheric column separately, the resulting uncertainties have remained unknown. This project has provided the first estimates on the way average solar heating is affected by interactions between nearby columns. These estimates have been obtained by combining several years of cloud observations at three DOE Atmospheric Radiation Measurement (ARM) Climate Research Facility sites (in Alaska, Oklahoma, and Papua New Guinea) with simulations of solar radiation around the observed clouds. The importance of radiative interactions between atmospheric columns was evaluated by contrasting simulations that included the interactions with those that did not. This study provides lower-bound estimates for radiative interactions: It cannot consider interactions in cross-wind direction, because it uses two-dimensional vertical cross-sections through clouds that were observed by instruments looking straight up as clouds drifted aloft. Data from new DOE scanning radars will allow future radiative studies to consider the full three-dimensional nature of radiative processes. The results reveal that two-dimensional radiative interactions increase overall day-and-night average solar heating by about 0.3, 1.2, and 4.1 Watts per meter square at the three sites, respectively. This increase grows further if one considers that most large-domain cloud simulations have resolutions that cannot specify small-scale cloud variability. For example, the increases in solar heating mentioned above roughly double for a fairly typical model resolution of 1 km. The study also examined the factors that shape radiative interactions between atmospheric columns and
3D Monte Carlo radiation transfer modelling of photodynamic therapy
NASA Astrophysics Data System (ADS)
Campbell, C. Louise; Christison, Craig; Brown, C. Tom A.; Wood, Kenneth; Valentine, Ronan M.; Moseley, Harry
2015-06-01
The effects of ageing and skin type on Photodynamic Therapy (PDT) for different treatment methods have been theoretically investigated. A multilayered Monte Carlo Radiation Transfer model is presented where both daylight activated PDT and conventional PDT are compared. It was found that light penetrates deeper through older skin with a lighter complexion, which translates into a deeper effective treatment depth. The effect of ageing was found to be larger for darker skin types. The investigation further strengthens the usage of daylight as a potential light source for PDT where effective treatment depths of about 2 mm can be achieved.
3-D Measurement of Recycling and Radiation in MST
NASA Astrophysics Data System (ADS)
Norval, Ryan; Goetz, John; Schmitz, Oliver
2016-10-01
The MST reversed-field pinch (RFP) can undergo spontaneous transition to a helical core state, associated with the growth of the innermost resonant magnetic mode. Currently multiple 2-D imaging cameras are in place allowing for nearly full vessel viewing and measurement of recycling and impurities fluxes. The transition from the standard to helical RFP causes an observable change in edge plasma. While in the helical state the plasma wall interaction (PWI) on MSTs poloidal limiter strongly correlates with the helicity of the core mode. PWI on the toroidal limiter overall is reduced, with the remaining PWI sites corresponding the helicity of the core mode, or the locations of diagnostic limiters and the error fields they create. EIRENE, a neutral particle code use for modeling edge plasmas, is used to compute the neutral profiles based on measured recycling fluxes. EIRENE computes the radiative and charge exchange power losses. Comparison is made between the standard and helical RFP plasmas. Bolometer measurements of total radiation are currently in progress to supplement the modeling. This work is supported by the U.S. Department of Energy.
Parallel beam optical tomography apparatus for 3D radiation dosimetry
NASA Astrophysics Data System (ADS)
Krstajic, Nikola; Doran, Simon J.
2005-06-01
Since the discovery of X rays radiotherapy has had the same aim - to deliver a precisely measured dose of radiation to a defined tumour volume with minimal damage to surrounding healthy tissue. Recent developments in radiotherapy such as intensity modulated radiotherapy (IMRT) can generate complex shapes of dose distributions. Until recently it has not been possible to verify that the delivered dose matches the planned dose. However, one often wants to know the real three-dimensional dose distribution. Three-dimensional radiation dosimeters have been developed since the early 1980s. Most chemical formulations involve a radiosensitive species immobilised in space by gelling agent. Magnetic Resonance Imaging (MRI) and optical techniques have been the most successful gel scanning techniques so far. Optical techniques rely on gels changing colour once irradiated. Parallel beam optical tomography has been developed at the University of Surrey since the late 1990s. The apparatus involves light emitting diode light source collimated to a wide (12cm) parallel beam. The beam is attenuated or scattered (depending on the chemical formulation) as it passes through the gel. Focusing optics projects the beam onto a CCD chip. The dosimeter sits on a rotation stage. The tomography scan involves continuously rotating the dosimeter and taking CCD images. Once the dosimeter has been rotated over 180 degrees the images are processed by filtered back projection. The work presented discusses the optics of the apparatus in more detail.
Do Fractal Models of Clouds Produces the Right 3D Radiative Effects?
NASA Technical Reports Server (NTRS)
Varnai, Tamas; Marshak, Alexander; Einaudi, Franco (Technical Monitor)
2001-01-01
Stochastic fractal models of clouds are often used to study 3D radiative effects and their influence on the remote sensing of cloud properties. Since it is important that the cloud models produce a correct radiative response, some researchers require the model parameters to match observed cloud properties such as scale-independent optical thickness variability. Unfortunately, matching these properties does not necessarily imply that the cloud models will cause the right 3D radiative effects. First, the matched properties alone only influence the 3D effects but do not completely determine them. Second, in many cases the retrieved cloud properties have been already biased by 3D radiative effects, and so the models may not match the true real clouds. Finally, the matched cloud properties cannot be considered independent from the scales at which they have been retrieved. This paper proposes an approach that helps ensure that fractal cloud models are realistic and produce the right 3D effects. The technique compares the results of radiative transfer simulations for the model clouds to new direct observations of 3D radiative effects in satellite images.
A study on radiative transfer effects in 3-D cloudy atmosphere using satellite data
NASA Astrophysics Data System (ADS)
Okata, M.; Nakajima, T.; Suzuki, K.; Inoue, T.; Nakajima, T. Y.; Okamoto, H.
2017-01-01
This study evaluates 3-D cloud effects on the radiation budget with a combined use of active sensor cloud profiling radar/CloudSat and imager Moderate Resolution Imaging Spectroradiometer/Aqua data on the A-train. An algorithm is devised for constructing 3-D cloud fields based on satellite-observed cloud information. The 3-D cloud fields thus constructed are used to calculate the broadband solar and thermal radiative fluxes with a 3-D radiative transfer code developed by the authors. The aim of this study is to investigate the effects of cloud morphology on solar radiative transfer in cloudy atmosphere. For this purpose, 3-D cloud fields are constructed with the new satellite-based method, to which full 3D-RT (radiative transfer) simulations are applied. The simulated 3-D radiation fields are then used to examine and quantify errors of existing typical plane-parallel approximations, i.e., Plane-Parallel Approximation, Independent Pixel Approximation and Tilted Independent Pixel Approximation. Such 3D-RT simulations also serve to address another objective of this study, i.e., to devise an accurate approximation and to characterize the observed specific 3D-RT effects by the cloud morphology based on knowledge of idealized 3D-RT effects. We introduce a modified approach based on an optimum value of diffusivity factor to better approximate the radiative fluxes for arbitrary solar zenith angle determined from the results of 3-D radiative transfer simulations to redeem the overcorrections of these approximations for large solar zenith angles (SZAs). This new approach, called Slant path Independent Pixel Approximation, is found to be better than other approximations when SZA is large for some cloud cases. Based on the SZA dependence of the errors of these approximations relative to 3-D computations, satellite-observed real cloud cases are found to fall into either of three types of different morphologies, i.e., isolated cloud type, upper cloud-roughened type and lower
3-D Simulations Of AGN Feedback via Radiation and Radiation-driven Outflows
NASA Astrophysics Data System (ADS)
Kurosawa, Ryuichi; Proga, D.
2009-01-01
We present numerical studies of non-axisymmetric, time-dependent gas hydrodynamic in a relatively large scale ( 10 pc). We consider the gas under the influence of the gravity of a super massive black hole (SMBH) and the radiation produced by a radiatively efficient flow accreting onto the SMBH. We examine two cases: (1) the formation of an outflow from the accretion of the ambient gas without rotation and (2) that with rotation. Our 3-D simulations of a non-rotating gas show small yet noticeable non-axisymmetric small-scale features inside the outflow; however, the outflow as a whole and the inflow do not seem to suffer from any large-scale instability. In the rotating case, the non-axisymmetric features are very prominent, especially in the outflow which consists of many cold dense clouds entrained in a smoother hot component. The 3-D outflow becomes non-axisymmetric due to the shear and thermal instabilities. We find that gas rotation increases the outflow thermal energy flux, but it reduces the outflow mass and kinetic energy fluxes and the outflow collimation. The virial mass estimated from the kinematics of the cold clouds found in our 3-D simulations of rotating gas underestimates the actual mass used in the simulations by about 40%. Overall the large scale outflow significantly reduces the rate at which mass accretes onto the SMBH. This work was supported by NASA through grant HST-AR-11276 from the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS5-26555.
M3D project for simulation studies of plasmas
Park, W.; Belova, E.V.; Fu, G.Y.; Strauss, H.R.; Sugiyama, L.E.
1998-12-31
The M3D (Multi-level 3D) project carries out simulation studies of plasmas of various regimes using multi-levels of physics, geometry, and mesh schemes in one code package. This paper and papers by Strauss, Sugiyama, and Belova in this workshop describe the project, and present examples of current applications. The currently available physics models of the M3D project are MHD, two-fluids, gyrokinetic hot particle/MHD hybrid, and gyrokinetic particle ion/two-fluid hybrid models. The code can be run with both structured and unstructured meshes.
3D hydrodynamical and radiative transfer modeling of η Carinae's colliding winds
NASA Astrophysics Data System (ADS)
Madura, T. I.; Clementel, N.; Gull, T. R.; Kruip, C. J. H.; Paardekooper, J.-P.; Icke, V.
We present results of full 3D hydrodynamical and radiative transfer simulations of the colliding stellar winds in the massive binary system η Carinae. We accomplish this by applying the SimpleX algorithm for 3D radiative transfer on an unstructured Voronoi-Delaunay grid to recent 3D smoothed particle hydrodynamics (SPH) simulations of the binary colliding winds. We use SimpleX to obtain detailed ionization fractions of hydrogen and helium, in 3D, at the resolution of the original SPH simulations. We investigate several computational domain sizes and Luminous Blue Variable primary star mass-loss rates. We furthermore present new methods of visualizing and interacting with output from complex 3D numerical simulations, including 3D interactive graphics and 3D printing. While we initially focus on η Car, the methods employed can be applied to numerous other colliding wind (WR 140, WR 137, WR 19) and dusty `pinwheel' (WR 104, WR 98a) binary systems. Coupled with 3D hydrodynamical simulations, SimpleX simulations have the potential to help determine the regions where various observed time-variable emission and absorption lines form in these unique objects.
3D photomechanical model of tooth enamel ablation by Er-laser radiation
NASA Astrophysics Data System (ADS)
Belikov, Andrey V.; Shatilova, Ksenia V.; Skrypnik, Alexei V.
2014-02-01
The three-dimensional (3D) photomechanical model of human tooth enamel ablation is described. It takes into account: the structural peculiarities of enamel, Er-laser beam energy spatial distribution and laser radiation attenuation in the tissue. Dynamics change of enamel coefficient of absorption during ablation is also discussed. We consider the 3D photomechanical model of incomplete removal (modification) of the enamel rods by the pressure of water contained in the enamel pores and heated by laser radiation, and complete removal (ablation) of the enamel rods as result of hydroxyapatite heated by laser radiation and evaporation. Modeling results are in close agreement with the experimental results.
MO-B-BRD-01: Creation of 3D Printed Phantoms for Clinical Radiation Therapy
Ehler, E.
2015-06-15
This session is designed so that the learning objectives are practical. The intent is that the attendee may take home an understanding of not just the technology, but also the logistical steps necessary to execute these 3D printing techniques in the clinic. Four practical 3D printing topics will be discussed: (i) Creating bolus and compensators for photon machines; (ii) tools for proton therapy; (iii) clinical applications in imaging; (iv) custom phantom design for clinic and research use. The use of 3D printers within the radiation oncology setting is proving to be a useful tool for creating patient specific bolus and compensators with the added benefit of cost savings. Creating the proper protocol is essential to ensuring that the desired effect is achieved and modeled in the treatment planning system. The critical choice of printer material (since it determines the interaction with the radiation) will be discussed. Selection of 3D printer type, design methods, verification of dose calculation, and the printing process will be detailed to give the basis for establishing your own protocol for electron and photon fields. A practical discussion of likely obstacles that may be encountered will be included. The diversity of systems and techniques in proton facilities leads to different facilities having very different requirements for beam modifying hardware and quality assurance devices. Many departments find the need to design and fabricate facility-specific equipment, making 3D printing an attractive technology. 3D printer applications in proton therapy will be discussed, including beam filters and compensators, and the design of proton therapy specific quality assurance tools. Quality control specific to 3D printing in proton therapy will be addressed. Advantages and disadvantages of different printing technology for these applications will also be discussed. 3D printing applications using high-resolution radiology-based imaging data will be presented. This data
Numerical non-LTE 3D radiative transfer using a multigrid method
NASA Astrophysics Data System (ADS)
Bjørgen, Johan P.; Leenaarts, Jorrit
2017-03-01
Context. 3D non-LTE radiative transfer problems are computationally demanding, and this sets limits on the size of the problems that can be solved. So far, multilevel accelerated lambda iteration (MALI) has been the method of choice to perform high-resolution computations in multidimensional problems. The disadvantage of MALI is that its computing time scales as O(n2), with n the number of grid points. When the grid becomes finer, the computational cost increases quadratically. Aims: We aim to develop a 3D non-LTE radiative transfer code that is more efficient than MALI. Methods: We implement a non-linear multigrid, fast approximation storage scheme, into the existing Multi3D radiative transfer code. We verify our multigrid implementation by comparing with MALI computations. We show that multigrid can be employed in realistic problems with snapshots from 3D radiative magnetohydrodynamics (MHD) simulations as input atmospheres. Results: With multigrid, we obtain a factor 3.3-4.5 speed-up compared to MALI. With full-multigrid, the speed-up increases to a factor 6. The speed-up is expected to increase for input atmospheres with more grid points and finer grid spacing. Conclusions: Solving 3D non-LTE radiative transfer problems using non-linear multigrid methods can be applied to realistic atmospheres with a substantial increase in speed.
NASA Astrophysics Data System (ADS)
Davis, Anthony B.; Marshak, Alexander
2010-02-01
The interplay of sunlight with clouds is a ubiquitous and often pleasant visual experience, but it conjures up major challenges for weather, climate, environmental science and beyond. Those engaged in the characterization of clouds (and the clear air nearby) by remote sensing methods are even more confronted. The problem comes, on the one hand, from the spatial complexity of real clouds and, on the other hand, from the dominance of multiple scattering in the radiation transport. The former ingredient contrasts sharply with the still popular representation of clouds as homogeneous plane-parallel slabs for the purposes of radiative transfer computations. In typical cloud scenes the opposite asymptotic transport regimes of diffusion and ballistic propagation coexist. We survey the three-dimensional (3D) atmospheric radiative transfer literature over the past 50 years and identify three concurrent and intertwining thrusts: first, how to assess the damage (bias) caused by 3D effects in the operational 1D radiative transfer models? Second, how to mitigate this damage? Finally, can we exploit 3D radiative transfer phenomena to innovate observation methods and technologies? We quickly realize that the smallest scale resolved computationally or observationally may be artificial but is nonetheless a key quantity that separates the 3D radiative transfer solutions into two broad and complementary classes: stochastic and deterministic. Both approaches draw on classic and contemporary statistical, mathematical and computational physics.
NASA Technical Reports Server (NTRS)
Davis, Anthony B.; Marshak, Alexander
2010-01-01
The interplay of sunlight with clouds is a ubiquitous and often pleasant visual experience, but it conjures up major challenges for weather, climate, environmental science and beyond. Those engaged in the characterization of clouds (and the clear air nearby) by remote sensing methods are even more confronted. The problem comes, on the one hand, from the spatial complexity of real clouds and, on the other hand, from the dominance of multiple scattering in the radiation transport. The former ingredient contrasts sharply with the still popular representation of clouds as homogeneous plane-parallel slabs for the purposes of radiative transfer computations. In typical cloud scenes the opposite asymptotic transport regimes of diffusion and ballistic propagation coexist. We survey the three-dimensional (3D) atmospheric radiative transfer literature over the past 50 years and identify three concurrent and intertwining thrusts: first, how to assess the damage (bias) caused by 3D effects in the operational 1D radiative transfer models? Second, how to mitigate this damage? Finally, can we exploit 3D radiative transfer phenomena to innovate observation methods and technologies? We quickly realize that the smallest scale resolved computationally or observationally may be artificial but is nonetheless a key quantity that separates the 3D radiative transfer solutions into two broad and complementary classes: stochastic and deterministic. Both approaches draw on classic and contemporary statistical, mathematical and computational physics.
3D modeling of satellite spectral images, radiation budget and energy budget of urban landscapes
NASA Astrophysics Data System (ADS)
Gastellu-Etchegorry, J. P.
2008-12-01
DART EB is a model that is being developed for simulating the 3D (3 dimensional) energy budget of urban and natural scenes, possibly with topography and atmosphere. It simulates all non radiative energy mechanisms (heat conduction, turbulent momentum and heat fluxes, water reservoir evolution, etc.). It uses DART model (Discrete Anisotropic Radiative Transfer) for simulating radiative mechanisms: 3D radiative budget of 3D scenes and their remote sensing images expressed in terms of reflectance or brightness temperature values, for any atmosphere, wavelength, sun/view direction, altitude and spatial resolution. It uses an innovative multispectral approach (ray tracing, exact kernel, discrete ordinate techniques) over the whole optical domain. This paper presents two major and recent improvements of DART for adapting it to urban canopies. (1) Simulation of the geometry and optical characteristics of urban elements (houses, etc.). (2) Modeling of thermal infrared emission by vegetation and urban elements. The new DART version was used in the context of the CAPITOUL project. For that, districts of the Toulouse urban data base (Autocad format) were translated into DART scenes. This allowed us to simulate visible, near infrared and thermal infrared satellite images of Toulouse districts. Moreover, the 3D radiation budget was used by DARTEB for simulating the time evolution of a number of geophysical quantities of various surface elements (roads, walls, roofs). Results were successfully compared with ground measurements of the CAPITOUL project.
Gong, Xing; Kirk, Michael Collins; Napoli, Josh; Stutsman, Sandy; Zusag, Tom; Khelashvili, Gocha; Chu, James
2009-07-17
To design and implement a set of quality assurance tests for an innovative 3D volumetric display for radiation treatment planning applications. A genuine 3D display (Perspecta Spatial 3D, Actuality-Systems Inc., Bedford, MA) has been integrated with the Pinnacle TPS (Philips Medical Systems, Madison WI), for treatment planning. The Perspecta 3D display renders a 25 cm diameter volume that is viewable from any side, floating within a translucent dome. In addition to displaying all 3D data exported from Pinnacle, the system provides a 3D mouse to define beam angles and apertures and to measure distance. The focus of this work is the design and implementation of a quality assurance program for 3D displays and specific 3D planning issues as guided by AAPM Task Group Report 53. A series of acceptance and quality assurance tests have been designed to evaluate the accuracy of CT images, contours, beams, and dose distributions as displayed on Perspecta. Three-dimensional matrices, rulers and phantoms with known spatial dimensions were used to check Perspecta's absolute spatial accuracy. In addition, a system of tests was designed to confirm Perspecta's ability to import and display Pinnacle data consistently. CT scans of phantoms were used to confirm beam field size, divergence, and gantry and couch angular accuracy as displayed on Perspecta. Beam angles were verified through Cartesian coordinate system measurements and by CT scans of phantoms rotated at known angles. Beams designed on Perspecta were exported to Pinnacle and checked for accuracy. Dose at sampled points were checked for consistency with Pinnacle and agreed within 1% or 1 mm. All data exported from Pinnacle to Perspecta was displayed consistently. The 3D spatial display of images, contours, and dose distributions were consistent with Pinnacle display. When measured by the 3D ruler, the distances between any two points calculated using Perspecta agreed with Pinnacle within the measurement error.
A Review of 3D Radiative Transfer in Atmospheric Science: History and Outlook
NASA Astrophysics Data System (ADS)
Wiscombe, W. J.
2006-12-01
3D radiative transfer has, until recently, remained a marginal subject within atmospheric science. While some measurement techniques like lidar and radar are inherently 3D, the simplifying assumptions made in the use of such data have alleviated any need to deal with 3D radiative transfer. Cloud scenes are obviously 3D, but the crude resolution of past atmospheric models (GCMs) required clouds to be treated as 1D. Measured radiative fluxes containing 3D cloud effects were simply time-averaged until all their 3D-ness was apparently beaten out of them. The main subject which has propelled 3D radiative transfer onto center stage is, nevertheless, clouds. This is because conventional GCMs are being challenged by GCMs that have their large-scale parametrizations of cloud-related processes replaced by explicit cloud-system-resolving models. Within these new GCMs, 3D radiative transfer cannot be ignored since cloud fluctuations are resolved explicitly down to scales where 1D and 3D radiative transfer can differ markedly. This talk will attempt to identify the high points in the development of the 3D cloud radiation field. My own career interleaved with much of this history, including the strong move away from just using computers and toward field observations, and also the effort to fit the new knowledge into climate models. The 3D cloud radiation field began in the 1970s, but attracted few adherents because of severe limitations on computer time and memory, and also because of ignorance of cloud structure (beyond the qualitative classifications which had ruled for 170 years). The earliest landmarks were Monte Carlo calcuations for cubic clouds, whose main point was the drastic errors incurred by ignoring cloud 3D-ness. This line of development ramified until the early 1990s, leading finally to randomly placed cubes with sizes drawn from a probability distribution. A parallel line of development began with the landmark paper of Lovejoy in 1982, which showed that cloud
Oxygen ingress study of 3D printed gaseous radiation detector enclosures
Steer, Christopher A.; Durose, Aaron
2015-07-01
As part of our ongoing studies into the potential application of 3D printing techniques to gaseous radiation detectors, we have studied the ability of 3D printed enclosures to resist environmental oxygen ingress. A set of cuboid and hexagonal prism shaped enclosures with wall thicknesses of 4 mm, 6 mm, 8 mm and 10 mm were designed and printed in nylon using a EOSINT P 730 Selective Laser Sintering 3D printer system These test enclosures provide a comparison of different environmental gas ingress for different 3D printing techniques. The rate of change of oxygen concentration was found to be linear, decreasing as the wall thickness increases. It was also found that the hexagonal prism geometry produced a lower rate of change of oxygen concentration compared with the cuboid shaped enclosures. Possible reasons as to why these results were obtained are discussed The implications for the this study for deployable systems are also discussed (authors)
NASA Astrophysics Data System (ADS)
Olson, Gordon L.
2017-03-01
Gray and multigroup radiation is transported through 3D media consisting of spheres randomly placed in a uniform background. Comparisons are made between using constant radii spheres and three different distributions of sphere radii. Because of the computational cost of 3D calculations, only the lowest angle order, n=1, is tested. If the mean chord length is held constant, using different radii distributions makes little difference. This is true for both gray and multigroup solutions. 3D transport solutions are compared to 2D and 1D solutions with the same mean chord lengths. 2D disk and 3D sphere media give solutions that are nearly identical while 1D slab solutions are fundamentally different.
New insights on pulsating white dwarfs from 3D radiation-hydrodynamical simulations
NASA Astrophysics Data System (ADS)
Tremblay, Pier-Emmanuel; Fontaine, Gilles; Ludwig, Hans-Günter; Gianninas, Alexandros; Kilic, Mukremin
We have recently computed a grid of 3D radiation-hydrodynamical simulations for the atmosphere of pure-hydrogen DA white dwarfs in the range 5.0 < log g < 9.0. Our grid covers the full ZZ Ceti instability strip where pulsating DA white dwarfs are located. We have significantly improved the theoretical framework to study these objects by removing the free parameters of 1D convection, which were previously a major modeling hurdle. We present improved atmospheric parameter determinations based on spectroscopic fits with 3D model spectra, allowing for an updated definition of the empirical edges of the ZZ Ceti instability strip. Our 3D simulations also precisely predict the depth of the convection zones, narrowing down the internal layers where pulsation are being driven. We hope that these 3D effects will be included in asteroseismic models in the future to predict the region of the HR diagram where white dwarfs are expected to pulsate.
Olson, Gordon Lee
2016-12-06
Here, gray and multigroup radiation is transported through 3D media consisting of spheres randomly placed in a uniform background. Comparisons are made between using constant radii spheres and three different distributions of sphere radii. Because of the computational cost of 3D calculations, only the lowest angle order, n=1, is tested. If the mean chord length is held constant, using different radii distributions makes little difference. This is true for both gray and multigroup solutions. 3D transport solutions are compared to 2D and 1D solutions with the same mean chord lengths. 2D disk and 3D sphere media give solutions that aremore » nearly identical while 1D slab solutions are fundamentally different.« less
Olson, Gordon Lee
2016-12-06
Here, gray and multigroup radiation is transported through 3D media consisting of spheres randomly placed in a uniform background. Comparisons are made between using constant radii spheres and three different distributions of sphere radii. Because of the computational cost of 3D calculations, only the lowest angle order, n=1, is tested. If the mean chord length is held constant, using different radii distributions makes little difference. This is true for both gray and multigroup solutions. 3D transport solutions are compared to 2D and 1D solutions with the same mean chord lengths. 2D disk and 3D sphere media give solutions that are nearly identical while 1D slab solutions are fundamentally different.
3D Hydrodynamical and Radiative Transfer Modeling of Eta Carinae's Colliding Winds
NASA Astrophysics Data System (ADS)
Madura, Thomas Ignatius; Clementel, Nicola; Gull, Theodore R.; Kruip, Chael J. H.; Paardekooper, Jan-Pieter; Icke, Vincent
2015-08-01
We present the results of full 3D hydrodynamical and radiative transfer simulations of the colliding stellar winds in the massive binary system Eta Carinae (Clementel, Madura, et al. 2014, MNRAS, 443, 2475 and Clementel, Madura, et al. 2015, MNRAS, 447, 2445). We accomplish this by applying the SimpleX algorithm for 3D radiative transfer on an unstructured Voronoi-Delaunay grid to 3D smoothed particle hydrodynamics simulations of the binary colliding winds. We use SimpleX to obtain detailed ionization fractions of hydrogen and helium in 3D. We investigate several computational domain sizes and Luminous Blue Variable primary-star mass-loss rates. We show how the SimpleX simulations can be used to generate synthetic spectral data cubes for comparison to data obtained with the Hubble Space Telescope (HST)/Space Telescope Imaging Spectrograph as part of a multi-cycle program to map changes in Eta Carinae's spatially extended interacting wind structures across one binary cycle. Comparison of the HST observations to the SimpleX models can help lead to more accurate constraints on the orbital, stellar, and wind parameters of the Eta Carinae system, such as the LBV primary's mass-loss rate and the companion star's temperature and luminosity. We furthermore present new methods of visualizing and interacting with output from complex 3D numerical simulations, including 3D interactive graphics and 3D printing (Madura et al. 2015, arXiv:1503.00716). While we initially focus specifically on Eta Carinae, the methods employed can be applied to numerous other colliding wind (WR 140, WR 137, WR 19) and dusty ‘pinwheel’ (WR 112, WR 104, WR 98a) binary systems. Coupled with 3D hydrodynamical simulations, SimpleX simulations have the potential to help determine the regions where dust can form and survive in these unique objects.
A 3D radiative transfer framework . VII. Arbitrary velocity fields in the Eulerian frame
NASA Astrophysics Data System (ADS)
Seelmann, A. M.; Hauschildt, P. H.; Baron, E.
2010-11-01
Aims: A solution of the radiative-transfer problem in 3D with arbitrary velocity fields in the Eulerian frame is presented. The method is implemented in our 3D radiative transfer framework and used in the PHOENIX/3D code. It is tested by comparison to our well-tested 1D co-moving frame radiative transfer code, where the treatment of a monotonic velocity field is implemented in the Lagrangian frame. The Eulerian formulation does not need much additional memory and is useable on state-of-the-art computers, even large-scale applications with 1000's of wavelength points are feasible. Methods: In the Eulerian formulation of the problem, the photon is seen by the atom at a Doppler-shifted wavelength depending on its propagation direction, which leads to a Doppler-shifted absorption and emission. This leads to a different source function and a different Λ^* operator in the radiative transfer equations compared to the static case. Results: The results of the Eulerian 3D spherical calculations are compared to our well-tested 1D Lagrangian spherical calculations, the agreement is, up to vmax = 1 × 103 km s-1 very good. Test calculation in other geometries are also shown.
3D Radiative Transfer models of Planetary Nebulae with CRONOS and CLOUDY
NASA Astrophysics Data System (ADS)
Niederwanger, F.; Öttl, Silvia; Kimeswenger, S.; Kissmann, R.; Reitberger, K.
2014-04-01
We present our ideas about a new setup for a full 3D radiative transfer hydrodynamic (RT-HD) computation for planetary nebulae (PNe). The setup is based on the 3D MHD code CRONOS, using low dissipative conservation numerical schemes for hydrodynamics and MHD (Kissmann et al. 2009), and on CLOUDY (Ferland et al. 2013). New to our ideas is the implementation of CLOUDY for the radiative terms. While in previous works internal cooling was calculated using analytical cooling curves from Dalgarno&McCray (1972) for the lower temperatures and from Gerritsen&Icke (1997) for the high temperature regime, we intend to use the sophisticated physics of CLOUDY in a similar way as for CLOUDY 3D (Morisset, 2011). The hydrodynamic calculations provide the density and velocity structure. Repeatedly, a CLOUDY model is calculated to derive cooling, absorption and radiative pressure acceleration terms for the hydro code. We show the feasibility of this setup for symmetric and asymmetric geometries of PNe. Euclidean grids are used to avoid imprinting. We present first tests for this setup and first results on the numerical stability. These simulations were run using different geometries, like e.g. disks. Another group is working on 3D models of particle acceleration in radiatively driven colliding winds of massive star binary systems. Although this is a completely different energy regime, binary systems are of great interest for asymmetric PNe as well. The setup allows us simulations using any arbitrary geometry.
Li, Yong Gang; Yang, Yang; Short, Michael P.; Ding, Ze Jun; Zeng, Zhi; Li, Ju
2015-01-01
SRIM-like codes have limitations in describing general 3D geometries, for modeling radiation displacements and damage in nanostructured materials. A universal, computationally efficient and massively parallel 3D Monte Carlo code, IM3D, has been developed with excellent parallel scaling performance. IM3D is based on fast indexing of scattering integrals and the SRIM stopping power database, and allows the user a choice of Constructive Solid Geometry (CSG) or Finite Element Triangle Mesh (FETM) method for constructing 3D shapes and microstructures. For 2D films and multilayers, IM3D perfectly reproduces SRIM results, and can be ∼102 times faster in serial execution and > 104 times faster using parallel computation. For 3D problems, it provides a fast approach for analyzing the spatial distributions of primary displacements and defect generation under ion irradiation. Herein we also provide a detailed discussion of our open-source collision cascade physics engine, revealing the true meaning and limitations of the “Quick Kinchin-Pease” and “Full Cascades” options. The issues of femtosecond to picosecond timescales in defining displacement versus damage, the limitation of the displacements per atom (DPA) unit in quantifying radiation damage (such as inadequacy in quantifying degree of chemical mixing), are discussed. PMID:26658477
NASA Technical Reports Server (NTRS)
Chang, Chau-Lyan; Venkatachari, Balaji Shankar; Cheng, Gary
2013-01-01
With the wide availability of affordable multiple-core parallel supercomputers, next generation numerical simulations of flow physics are being focused on unsteady computations for problems involving multiple time scales and multiple physics. These simulations require higher solution accuracy than most algorithms and computational fluid dynamics codes currently available. This paper focuses on the developmental effort for high-fidelity multi-dimensional, unstructured-mesh flow solvers using the space-time conservation element, solution element (CESE) framework. Two approaches have been investigated in this research in order to provide high-accuracy, cross-cutting numerical simulations for a variety of flow regimes: 1) time-accurate local time stepping and 2) highorder CESE method. The first approach utilizes consistent numerical formulations in the space-time flux integration to preserve temporal conservation across the cells with different marching time steps. Such approach relieves the stringent time step constraint associated with the smallest time step in the computational domain while preserving temporal accuracy for all the cells. For flows involving multiple scales, both numerical accuracy and efficiency can be significantly enhanced. The second approach extends the current CESE solver to higher-order accuracy. Unlike other existing explicit high-order methods for unstructured meshes, the CESE framework maintains a CFL condition of one for arbitrarily high-order formulations while retaining the same compact stencil as its second-order counterpart. For large-scale unsteady computations, this feature substantially enhances numerical efficiency. Numerical formulations and validations using benchmark problems are discussed in this paper along with realistic examples.
Sun, Shuh-Ping; Wu, Ching-Jung
2004-01-01
This paper describes the full size solid 3D Anthropometric Model using in the positioning and verification process for radiation treatment planning of the skull of cancer patients in radiotherapy. In order to obtain a full scale 3D, solid Anthropometric Model, data is first collected through computed tomography and optical scanning. Through surface reconstruction, a model is made of the patients skull, after which rapid prototyping and rapid tooling is applied to acquire a 1:1 solid model, thus, it can replace the patient for the tumor positioning and verification in radiotherapy. The 3D Anthropometric Model are not only provide a clear picture of the external appearance, but also allow insight into the internal structure of organic bodies, which is of great advantage in radiotherapy. During radiotherapy planning, 3D Anthropometric Model can be used to simulate all kinds of situations on the simulator and the linear accelerator, without the patient needing to be present, so that the medical physicist or dosimetrist will be able to design a precise treatment plan that is tailored to the patient. The 3D Anthropometric Model production system can effectively help us solve problems related to r adiotherapy positioning and verification, helping both radiotherapists and cancer patients. We expect that the application of 3D Anthropometric Model can reduce the time that needs to be spent on pretreatment procedures and enhance the quality of health care for cancer patients.
NASA Technical Reports Server (NTRS)
Patel, Zarana S.; Kidane, Yared H.; Huff, Janice L.
2014-01-01
In this work, we evaluated the differential effects of low- and high-LET radiation on 3-D organotypic cultures in order to investigate radiation quality impacts on gene expression and cellular responses. Current risk models for assessment of space radiation-induced cancer have large uncertainties because the models for adverse health effects following radiation exposure are founded on epidemiological analyses of human populations exposed to low-LET radiation. Reducing these uncertainties requires new knowledge on the fundamental differences in biological responses (the so-called radiation quality effects) triggered by heavy ion particle radiation versus low-LET radiation associated with Earth-based exposures. In order to better quantify these radiation quality effects in biological systems, we are utilizing novel 3-D organotypic human tissue models for space radiation research. These models hold promise for risk assessment as they provide a format for study of human cells within a realistic tissue framework, thereby bridging the gap between 2-D monolayer culture and animal models for risk extrapolation to humans. To identify biological pathway signatures unique to heavy ion particle exposure, functional gene set enrichment analysis (GSEA) was used with whole transcriptome profiling. GSEA has been used extensively as a method to garner biological information in a variety of model systems but has not been commonly used to analyze radiation effects. It is a powerful approach for assessing the functional significance of radiation quality-dependent changes from datasets where the changes are subtle but broad, and where single gene based analysis using rankings of fold-change may not reveal important biological information.
Real-time 3D radiation risk assessment supporting simulation of work in nuclear environments.
Szőke, I; Louka, M N; Bryntesen, T R; Bratteli, J; Edvardsen, S T; RøEitrheim, K K; Bodor, K
2014-06-01
This paper describes the latest developments at the Institute for Energy Technology (IFE) in Norway, in the field of real-time 3D (three-dimensional) radiation risk assessment for the support of work simulation in nuclear environments. 3D computer simulation can greatly facilitate efficient work planning, briefing, and training of workers. It can also support communication within and between work teams, and with advisors, regulators, the media and public, at all the stages of a nuclear installation's lifecycle. Furthermore, it is also a beneficial tool for reviewing current work practices in order to identify possible gaps in procedures, as well as to support the updating of international recommendations, dissemination of experience, and education of the current and future generation of workers.IFE has been involved in research and development into the application of 3D computer simulation and virtual reality (VR) technology to support work in radiological environments in the nuclear sector since the mid 1990s. During this process, two significant software tools have been developed, the VRdose system and the Halden Planner, and a number of publications have been produced to contribute to improving the safety culture in the nuclear industry.This paper describes the radiation risk assessment techniques applied in earlier versions of the VRdose system and the Halden Planner, for visualising radiation fields and calculating dose, and presents new developments towards implementing a flexible and up-to-date dosimetric package in these 3D software tools, based on new developments in the field of radiation protection. The latest versions of these 3D tools are capable of more accurate risk estimation, permit more flexibility via a range of user choices, and are applicable to a wider range of irradiation situations than their predecessors.
HERO - A 3D general relativistic radiative post-processor for accretion discs around black holes
NASA Astrophysics Data System (ADS)
Zhu, Yucong; Narayan, Ramesh; Sadowski, Aleksander; Psaltis, Dimitrios
2015-08-01
HERO (Hybrid Evaluator for Radiative Objects) is a 3D general relativistic radiative transfer code which has been tailored to the problem of analysing radiation from simulations of relativistic accretion discs around black holes. HERO is designed to be used as a post-processor. Given some fixed fluid structure for the disc (i.e. density and velocity as a function of position from a hydrodynamic or magnetohydrodynamic simulation), the code obtains a self-consistent solution for the radiation field and for the gas temperatures using the condition of radiative equilibrium. The novel aspect of HERO is that it combines two techniques: (1) a short-characteristics (SC) solver that quickly converges to a self-consistent disc temperature and radiation field, with (2) a long-characteristics (LC) solver that provides a more accurate solution for the radiation near the photosphere and in the optically thin regions. By combining these two techniques, we gain both the computational speed of SC and the high accuracy of LC. We present tests of HERO on a range of 1D, 2D, and 3D problems in flat space and show that the results agree well with both analytical and benchmark solutions. We also test the ability of the code to handle relativistic problems in curved space. Finally, we discuss the important topic of ray defects, a major limitation of the SC method, and describe our strategy for minimizing the induced error.
NASA Astrophysics Data System (ADS)
Wichert, Viktoria; Arkenberg, Mario; Hauschildt, Peter H.
2016-10-01
Highly resolved state-of-the-art 3D atmosphere simulations will remain computationally extremely expensive for years to come. In addition to the need for more computing power, rethinking coding practices is necessary. We take a dual approach by introducing especially adapted, parallel numerical methods and correspondingly parallelizing critical code passages. In the following, we present our respective work on PHOENIX/3D. With new parallel numerical algorithms, there is a big opportunity for improvement when iteratively solving the system of equations emerging from the operator splitting of the radiative transfer equation J = ΛS. The narrow-banded approximate Λ-operator Λ* , which is used in PHOENIX/3D, occurs in each iteration step. By implementing a numerical algorithm which takes advantage of its characteristic traits, the parallel code's efficiency is further increased and a speed-up in computational time can be achieved.
Scripting in Radiation Therapy: An Automatic 3D Beam-Naming System
Holdsworth, Clay; Hummel-Kramer, Sharon M.; Phillips, Mark
2011-10-01
Scripts can be executed within the radiation treatment planning software framework to reduce human error, increase treatment planning efficiency, reduce confusion, and promote consistency within an institution or even among institutions. Scripting is versatile, and one application is an automatic 3D beam-naming system that describes the position of the beam relative to the patient in 3D space. The naming system meets the need for nomenclature that is conducive for clear and accurate communication of beam entry relative to patient anatomy. In radiation oncology in particular, where miscommunication can cause significant harm to patients, a system that minimizes error is essential. Frequent sharing of radiation treatment information occurs not only among members within a department but also between different treatment centers. Descriptions of treatment beams are perhaps the most commonly shared information about a patient's course of treatment in radiation oncology. Automating the naming system by the use of a script reduces the potential for human error, improves efficiency, enforces consistency, and would allow an institution to convert to a new naming system with greater ease. This script has been implemented in the Department of Radiation Oncology at the University of Washington Medical Center since December 2009. It is currently part of the dosimetry protocol and is accessible by medical dosimetrists, radiation oncologists, and medical physicists. This paper highlights the advantages of using an automatic 3D beam-naming script to flawlessly and quickly identify treatment beams with unique names. Scripting in radiation treatment planning software has many uses and great potential for improving clinical care.
SU-C-213-03: Custom 3D Printed Boluses for Radiation Therapy
Zhao, B; Yang, M; Yan, Y; Rahimi, A; Chopra, R; Jiang, S
2015-06-15
Purpose: To develop a clinical workflow and to commission the process of creating custom 3d printed boluses for radiation therapy. Methods: We designed a workflow to create custom boluses using a commercial 3D printer. Contours of several patients were deformably mapped to phantoms where the test bolus contours were designed. Treatment plans were created on the phantoms following our institutional planning guideline. The DICOM file of the bolus contours were then converted to stereoLithography (stl) file for the 3d printer. The boluses were printed on a commercial 3D printer using polylactic acid (PLA) material. Custom printing parameters were optimized in order to meet the requirement of bolus composition. The workflow was tested on multiple anatomical sites such as skull, nose and chest wall. The size of boluses varies from 6×9cm2 to 12×25cm2. To commission the process, basic CT and dose properties of the printing materials were measured in photon and electron beams and compared against water and soft superflab bolus. Phantoms were then scanned to confirm the placement of custom boluses. Finally dose distributions with rescanned CTs were compared with those computer-generated boluses. Results: The relative electron density(1.08±0.006) of the printed boluses resemble those of liquid tap water(1.04±0.004). The dosimetric properties resemble those of liquid tap water(1.04±0.004). The dosimetric properties were measured at dmax with an ion chamber in electron and photon open beams. Compared with solid water and soft bolus, the output difference was within 1% for the 3D printer material. The printed boluses fit well to the phantom surfaces on CT scans. The dose distribution and DVH based on the printed boluses match well with those based on TPS generated boluses. Conclusion: 3d printing provides a cost effective and convenient solution for patient-specific boluses in radiation therapy.
NASA Astrophysics Data System (ADS)
Dumbser, Michael; Loubère, Raphaël
2016-08-01
In this paper we propose a simple, robust and accurate nonlinear a posteriori stabilization of the Discontinuous Galerkin (DG) finite element method for the solution of nonlinear hyperbolic PDE systems on unstructured triangular and tetrahedral meshes in two and three space dimensions. This novel a posteriori limiter, which has been recently proposed for the simple Cartesian grid case in [62], is able to resolve discontinuities at a sub-grid scale and is substantially extended here to general unstructured simplex meshes in 2D and 3D. It can be summarized as follows: At the beginning of each time step, an approximation of the local minimum and maximum of the discrete solution is computed for each cell, taking into account also the vertex neighbors of an element. Then, an unlimited discontinuous Galerkin scheme of approximation degree N is run for one time step to produce a so-called candidate solution. Subsequently, an a posteriori detection step checks the unlimited candidate solution at time t n + 1 for positivity, absence of floating point errors and whether the discrete solution has remained within or at least very close to the bounds given by the local minimum and maximum computed in the first step. Elements that do not satisfy all the previously mentioned detection criteria are flagged as troubled cells. For these troubled cells, the candidate solution is discarded as inappropriate and consequently needs to be recomputed. Within these troubled cells the old discrete solution at the previous time tn is scattered onto small sub-cells (Ns = 2 N + 1 sub-cells per element edge), in order to obtain a set of sub-cell averages at time tn. Then, a more robust second order TVD finite volume scheme is applied to update the sub-cell averages within the troubled DG cells from time tn to time t n + 1. The new sub-grid data at time t n + 1 are finally gathered back into a valid cell-centered DG polynomial of degree N by using a classical conservative and higher order
Partial redistribution in 3D non-LTE radiative transfer in solar-atmosphere models
NASA Astrophysics Data System (ADS)
Sukhorukov, Andrii V.; Leenaarts, Jorrit
2017-01-01
Context. Resonance spectral lines such as H I Ly α, Mg II H&K, and Ca II H&K that form in the solar chromosphere, are influenced by the effects of 3D radiative transfer as well as partial redistribution (PRD). So far no one has modeled these lines including both effects simultaneously owing to the high computing demands of existing algorithms. Such modeling is, however, indispensable for accurate diagnostics of the chromosphere. Aims: We present a computationally tractable method to treat PRD scattering in 3D model atmospheres using a 3D non-local thermodynamic equilibrium (non-LTE) radiative transfer code. Methods: To make the method memory-friendly, we use the hybrid approximation for the redistribution integral. To make the method fast, we use linear interpolation on equidistant frequency grids. We verify our algorithm against computations with the RH code and analyze it for stability, convergence, and usefulness of acceleration using model atoms of Mg II with the H&K lines and H I with the Ly α line treated in PRD. Results: A typical 3D PRD solution can be obtained in a model atmosphere with 252 × 252 × 496 coordinate points in 50 000-200 000 CPU hours, which is a factor ten slower than computations assuming complete redistribution. We illustrate the importance of the joint action of PRD and 3D effects for the Mg II H&K lines for disk-center intensities, as well as the center-to-limb variation. Conclusions: The proposed method allows for the simulation of PRD lines in a time series of radiation-magnetohydrodynamic models, in order to interpret observations of chromospheric lines at high spatial resolution.
Fast and slow radiation-driven wind solutions using ZEUS-3D
NASA Astrophysics Data System (ADS)
Araya, I.; Curé, M.; ud-Doula, A.; Santillán, A.
2014-10-01
Currently, the theory of radiation-driven winds of massive stars possess three known solutions for the velocity and density profiles of the stellar winds, namely: the fast, Ω -slow and δ -slow solutions. In order to confirm their stability we use a time-dependent numerical hydrodynamic code called ZEUS-3D, and then we compare their results with the stationary solutions from our numerical hydrodynamic code. ZEUS-3D needs an initial trial solution to start to integrate, for this we use the stationary solution (from our code) or a β-law for the velocity field. In both cases we obtain the same results. Fast and both slow stationary solutions are attained in ZEUS-3D and are all stable. Furthermore, there is a very good agreement with the velocity and density fields from ZEUS-3D and our code, having differences between the terminal velocities lower than 3%. In addition, we found that ZEUS-3D is very sensitive to the boundary conditions (base density and velocity profile), in some cases we obtain kinks in the velocity profiles, similar to the ones obtained by Madura et al. (2007) for stars with high rotation. Such kinks are most likely the result of the wind being mass overloaded, but further investigation is needed to understand its nature better. Currently, we are exploring the effects of small perturbation at the base of the wind in order to study possible transitions or oscillations between δ-slow and fast solutions.
Doran, Simon J
2009-03-01
Over recent decades, modern protocols of external beam radiotherapy have been developed that involve very steep dose gradients and are thus extremely sensitive to errors in treatment delivery. A recent credentialling study by the Radiological Physics Center at the MD Anderson Cancer Center (Texas, USA) has noted potentially significant inaccuracies in test treatments at a variety of institutions. 3-D radiation dosimetry (often referred to as "gel dosimetry") may have an important role in commissioning new treatment protocols, to help prevent this type of error. This article discusses the various techniques of 3-D radiation dosimetry, with a focus on the types of radiosensitive samples used and on the optical computed tomography readout technique.
High resolution 3D dosimetry for microbeam radiation therapy using optical CT
NASA Astrophysics Data System (ADS)
McErlean, C.; Bräuer-Krisch, E.; Adamovics, J.; Leach, M. O.; Doran, S. J.
2015-01-01
Optical Computed Tomography (CT) is a promising technique for dosimetry of Microbeam Radiation Therapy (MRT), providing high resolution 3D dose maps. Here different MRT irradiation geometries are visualised showing the potential of Optical CT as a tool for future MRT trials. The Peak-to-Valley dose ratio (PVDR) is calculated to be 7 at a depth of 3mm in the radiochromic dosimeter PRESAGE®. This is significantly lower than predicted values and possible reasons for this are discussed.
Gamma Radiation Induces Micronucleated Reticulocytes in 3-D Bone Marrow Bioreactors in Vitro
Sun, Hongliang; Dertinger, Stephen D.; Hyrien, Ollivier; David Wu, J. H.; Chen, Yuhchyau
2009-01-01
Radiation injury to the bone marrow is potentially lethal due to the potent DNA-damaging effects on cells of the hematopoietic system, including bone marrow stem cell, progenitor, and the precursor cell populations. Investigation of radiation genotoxic effects on bone marrow progenitor/precursor cells has been challenged by the lack of optimal in vitro surrogate organ culture systems, and the overall difficulty to sustain lineage-specific proliferation and differentiation of hematopoiesis in vitro. We report the investigation of radiation genotoxic effects in bone marrow cultures of C57Bl/6 mice established in 3-D bioreactors, which sustain long-term bone marrow cultures. For these studies, genotoxicity is measured by the induction of micronucleated reticulocytes (MN-RET). The kinetics and dose-response relationship of MN-RET induction in response to gamma-radiation of bioreactor-maintained bone marrow cultures are presented. Our data showed that 3-D long-term bone marrow cultures had sustained erythropoiesis capable of generating reticulocytes up to 8 weeks. The peak time-interval of viable cell output and percentage of reticulocytes increased steadily and reached the initial peak between the 14th to 21st days after inoculations. This was followed by a rebound or staying relatively constant until week 8. The percentage of MN-RET reached the maximum between 24 and 32 hours post 1 Gy gamma-ray. There was a near linear MN-RET induction by gamma radiation from 0 Gy to 1.0 Gy, followed by an attenuated increase to 1.5 – 2.0 Gy. The MN-RET response showed a downtrend beyond 2 Gy. Our data suggest that bone marrow culture in the 3-D bioreactor may be a useful organ culture system for the investigation of radiation genotoxic effect in vitro. PMID:19786117
New 3D Silicon detectors for dosimetry in Microbeam Radiation Therapy
NASA Astrophysics Data System (ADS)
Lerch, M. L. F.; Dipuglia, A.; Cameron, M.; Fournier, P.; Davis, J.; Petasecca, M.; Cornelius, I.; Perevertaylo, V.; Rosenfeld, A. B.
2017-01-01
Microbeam Radiation Therapy (MRT) involves the use of a spatially fractionated beam of synchrotron generated X-rays to treat tumours. MRT treatment is delivered via an array of high dose ‘peaks’ separated by low dose ‘valleys’. A good Peak to Valley Dose Ratio (PVDR) is an important indicator of successful treatment outcomes. MRT dosimetry requires a radiation hard detector with high spatial resolution, large dynamic range, which is ideally real-time and tissue equivalent. We have developed a Silicon Strip Detector (SSD) and very recently, a new 3D MESA SSD to meet the very stringent requirements of MRT dosimetry. We have compared these detectors through the characterisation of the MRT radiation field at the Australian Synchrotron Imaging and Medical Beamline. The EPI SSD was able to measure the microbeam profiles and PVDRs, however the effective spatial resolution was limited by the detector alignment options available at the time. The geometry of the new 3D MESA SSD is less sensitive to this alignment restriction was able to measure the microbeam profiles within 2 μm of that expected. The 3D MESA SSD measured PVDRs were possibly affected by undesired and slow charge collection outside the sensitive volume and additional scattering from the device substrate.
NASA Technical Reports Server (NTRS)
Clementel, N.; Madura, T. I.; Kruip, C.J.H.; Icke, V.; Gull, T. R.
2014-01-01
Eta Carinae is an ideal astrophysical laboratory for studying massive binary interactions and evolution, and stellar wind-wind collisions. Recent three-dimensional (3D) simulations set the stage for understanding the highly complex 3D flows in eta Car. Observations of different broad high- and low-ionization forbidden emission lines provide an excellent tool to constrain the orientation of the system, the primary's mass-loss rate, and the ionizing flux of the hot secondary. In this work we present the first steps towards generating synthetic observations to compare with available and future HST/STIS data. We present initial results from full 3D radiative transfer simulations of the interacting winds in eta Car.We use the SimpleX algorithm to post-process the output from 3D SPH simulations and obtain the ionization fractions of hydrogen and helium assuming three different mass-loss rates for the primary star. The resultant ionization maps of both species constrain the regions where the observed forbidden emission lines can form. Including collisional ionization is necessary to achieve a better description of the ionization states, especially in the areas shielded from the secondary's radiation. We find that reducing the primary's mass-loss rate increases the volume of ionized gas, creating larger areas where the forbidden emission lines can form.We conclude that post processing 3D SPH data with SimpleX is a viable tool to create ionization maps for eta Car.
NASA Technical Reports Server (NTRS)
Clementel, N.; Madura, T. I.; Kruip, C. J. H.; Icke, V.; Gull, T. R.
2014-01-01
Eta Carinae is an ideal astrophysical laboratory for studying massive binary interactions and evolution, and stellar wind-wind collisions. Recent three-dimensional (3D) simulations set the stage for understanding the highly complex 3D flows in Eta Car. Observations of different broad high- and low-ionization forbidden emission lines provide an excellent tool to constrain the orientation of the system, the primary's mass-loss rate, and the ionizing flux of the hot secondary. In this work we present the first steps towards generating synthetic observations to compare with available and future HST/STIS data. We present initial results from full 3D radiative transfer simulations of the interacting winds in Eta Car. We use the SimpleX algorithm to post-process the output from 3D SPH simulations and obtain the ionization fractions of hydrogen and helium assuming three different mass-loss rates for the primary star. The resultant ionization maps of both species constrain the regions where the observed forbidden emission lines can form. Including collisional ionization is necessary to achieve a better description of the ionization states, especially in the areas shielded from the secondary's radiation. We find that reducing the primary's mass-loss rate increases the volume of ionized gas, creating larger areas where the forbidden emission lines can form. We conclude that post processing 3D SPH data with SimpleX is a viable tool to create ionization maps for Eta Car.
3D ultrasound Nakagami imaging for radiation-induced vaginal fibrosis
NASA Astrophysics Data System (ADS)
Yang, Xiaofeng; Rossi, Peter; Shelton, Joseph; Bruner, Debrorah; Tridandapani, Srini; Liu, Tian
2014-03-01
Radiation-induced vaginal fibrosis is a debilitating side-effect affecting up to 80% of women receiving radiotherapy for their gynecological (GYN) malignancies. Despite the significant incidence and severity, little research has been conducted to identify the pathophysiologic changes of vaginal toxicity. In a previous study, we have demonstrated that ultrasound Nakagami shape and PDF parameters can be used to quantify radiation-induced vaginal toxicity. These Nakagami parameters are derived from the statistics of ultrasound backscattered signals to capture the physical properties (e.g., arrangement and distribution) of the biological tissues. In this paper, we propose to expand this Nakagami imaging concept from 2D to 3D to fully characterize radiation-induced changes to the vaginal wall within the radiation treatment field. A pilot study with 5 post-radiotherapy GYN patients was conducted using a clinical ultrasound scanner (6 MHz) with a mechanical stepper. A serial of 2D ultrasound images, with radio-frequency (RF) signals, were acquired at 1 mm step size. The 2D Nakagami shape and PDF parameters were calculated from the RF signal envelope with a sliding window, and then 3D Nakagami parameter images were generated from the parallel 2D images. This imaging method may be useful as we try to monitor radiation-induced vaginal injury, and address vaginal toxicities and sexual dysfunction in women after radiotherapy for GYN malignancies.
PREFACE: 7th International Conference on 3D Radiation Dosimetry (IC3DDose)
NASA Astrophysics Data System (ADS)
Thwaites, David; Baldock, Clive
2013-06-01
IC3DDose 2013, the 7th International Conference on 3D Radiation Dosimetry held in Sydney, Australia from 4-8 November 2012, grew out of the DosGel series, which began as DosGel99, the 1st International Workshop on Radiation Therapy Gel Dosimetry in Lexington, Kentucky. Since 1999 subsequent DoSGel conferences were held in Brisbane, Australia (2001), Ghent, Belgium (2004), Sherbrooke, Canada (2006) and Crete, Greece (2008). In 2010 the conference was held on Hilton Head Island, South Carolina and underwent a name-change to IC3DDose. The aim of the first workshop was to bring together individuals, both researchers and users, with an interest in 3D radiation dosimetry techniques, with a mix of presentations from basic science to clinical applications, which has remained an objective for all of the meetings. One rationale of DosGel99 was stated as supporting the increasing clinical implementation of gel dosimetry, as the technique appeared, at that time, to be leaving the laboratories of gel dosimetry enthusiasts and entering clinical practice. Clearly by labelling the first workshop as the 1st, there was a vision of a continuing series, which has been fulfilled. On the other hand, the expectation of widespread clinical use of gel dosimetry has perhaps not been what was hoped for and anticipated. Nevertheless the rapidly increasing demand for advanced high-precision 3D radiotherapy technology and techniques has continued apace. The need for practical and accurate 3D dosimetry methods for development and quality assurance has only increased. By the 6th meeting, held in South Carolina in 2010, the Conference Scientific Committee recognised the wider developments in 3D systems and methods and decided to widen the scope, whilst keeping the same span from basic science to applications. This was signalled by a change of name from 'Dosgel' to 'IC3DDose', a name that has continued to this latest conference. The conference objectives were: to enhance the quality and accuracy of
Radiation Coupling with the FUN3D Unstructured-Grid CFD Code
NASA Technical Reports Server (NTRS)
Wood, William A.
2012-01-01
The HARA radiation code is fully-coupled to the FUN3D unstructured-grid CFD code for the purpose of simulating high-energy hypersonic flows. The radiation energy source terms and surface heat transfer, under the tangent slab approximation, are included within the fluid dynamic ow solver. The Fire II flight test, at the Mach-31 1643-second trajectory point, is used as a demonstration case. Comparisons are made with an existing structured-grid capability, the LAURA/HARA coupling. The radiative surface heat transfer rates from the present approach match the benchmark values within 6%. Although radiation coupling is the focus of the present work, convective surface heat transfer rates are also reported, and are seen to vary depending upon the choice of mesh connectivity and FUN3D ux reconstruction algorithm. On a tetrahedral-element mesh the convective heating matches the benchmark at the stagnation point, but under-predicts by 15% on the Fire II shoulder. Conversely, on a mixed-element mesh the convective heating over-predicts at the stagnation point by 20%, but matches the benchmark away from the stagnation region.
A Radiative Transfer Case Study for 3-d cloud effects in the UV
NASA Astrophysics Data System (ADS)
Meerkötter, Ralf; Degünther, Markus
Satellite UV mapping is usually based on the independent pixel approximation (IPA) which neglects horizontal photon transport between adjacent columns. Horizontal inhomogeneity of cloud fields therefore causes uncertainties in the derived UV radiation fields. While these effects are small for large pixel satellites, the broken-cloud errors increase as the pixel size decreases. By comparing results of 1-d and 3-d UV radiative transfer calculations for three selected cloud scenes that cover a rather broad range of cloud inhomogeneity the main 3-d cloud effects on the atmospheric UV transmission are identified and quantified in their order of magnitude. With respect to the different spatial resolutions of satellite instruments it is further shown how 3-d cloud effects average out with increasing spatial scale. It turns out that locally the IPA cause maximum uncertainties up to ±100% for a spatial resolution of about 1 × 1 km² (e.g., AVHRR), they are reduced to ±10% for a resolution of about 15 × 15 km² and below 5% for a resolution greater than 30 km (e.g., TOMS).
Nogueira, L P; Braz, D; Barroso, R C; Oliveira, L F; Pinheiro, C J G; Dreossi, D; Tromba, G
2010-12-01
Conventional bone histomorphometry is an important method for quantitative evaluation of bone microstructure. X-ray computed microtomography is a non-invasive technique, which can be used to evaluate histomorphometric indices in trabecular bones (BV/TV, BS/BV, Tb.N, Tb.Th, Tb.Sp). In this technique, 3D images are used to quantify the whole sample, differently from the conventional one, in which the quantification is performed in 2D slices and extrapolated for 3D case. In this work, histomorphometric quantification using synchrotron 3D X-ray computed microtomography was performed to quantify the bone structure at different skeletal sites as well as to investigate the effects of bone diseases on quantitative understanding of bone architecture. The images were obtained at Synchrotron Radiation for MEdical Physics (SYRMEP) beamline, at ELETTRA synchrotron radiation facility, Italy. Concerning the obtained results for normal and pathological bones from same skeletal sites and individuals, from our results, a certain declining bone volume fraction was achieved. The results obtained could be used in forming the basis for comparison of the bone microarchitecture and can be a valuable tool for predicting bone fragility.
4D VMAT, gated VMAT, and 3D VMAT for stereotactic body radiation therapy in lung
NASA Astrophysics Data System (ADS)
Chin, E.; Loewen, S. K.; Nichol, A.; Otto, K.
2013-02-01
Four-dimensional volumetric modulated arc therapy (4D VMAT) is a treatment strategy for lung cancers that aims to exploit relative target and tissue motion to improve organ at risk (OAR) sparing. The algorithm incorporates the entire patient respiratory cycle using 4D CT data into the optimization process. Resulting treatment plans synchronize the delivery of each beam aperture to a specific phase of target motion. Stereotactic body radiation therapy treatment plans for 4D VMAT, gated VMAT, and 3D VMAT were generated on three patients with non-small cell lung cancer. Tumour motion ranged from 1.4-3.4 cm. The dose and fractionation scheme was 48 Gy in four fractions. A B-spline transformation model registered the 4D CT images. 4D dose volume histograms (4D DVH) were calculated from total dose accumulated at the maximum exhalation. For the majority of OARs, gated VMAT achieved the most radiation sparing but treatment times were 77-148% longer than 3D VMAT. 4D VMAT plan qualities were comparable to gated VMAT, but treatment times were only 11-25% longer than 3D VMAT. 4D VMAT's improvement of healthy tissue sparing can allow for further dose escalation. Future study could potentially adapt 4D VMAT to irregular patient breathing patterns.
PORTA: A Massively Parallel Code for 3D Non-LTE Polarized Radiative Transfer
NASA Astrophysics Data System (ADS)
Štěpán, J.
2014-10-01
The interpretation of the Stokes profiles of the solar (stellar) spectral line radiation requires solving a non-LTE radiative transfer problem that can be very complex, especially when the main interest lies in modeling the linear polarization signals produced by scattering processes and their modification by the Hanle effect. One of the main difficulties is due to the fact that the plasma of a stellar atmosphere can be highly inhomogeneous and dynamic, which implies the need to solve the non-equilibrium problem of generation and transfer of polarized radiation in realistic three-dimensional stellar atmospheric models. Here we present PORTA, a computer program we have developed for solving, in three-dimensional (3D) models of stellar atmospheres, the problem of the generation and transfer of spectral line polarization taking into account anisotropic radiation pumping and the Hanle and Zeeman effects in multilevel atoms. The numerical method of solution is based on a highly convergent iterative algorithm, whose convergence rate is insensitive to the grid size, and on an accurate short-characteristics formal solver of the Stokes-vector transfer equation which uses monotonic Bezier interpolation. In addition to the iterative method and the 3D formal solver, another important feature of PORTA is a novel parallelization strategy suitable for taking advantage of massively parallel computers. Linear scaling of the solution with the number of processors allows to reduce the solution time by several orders of magnitude. We present useful benchmarks and a few illustrations of applications using a 3D model of the solar chromosphere resulting from MHD simulations. Finally, we present our conclusions with a view to future research. For more details see Štěpán & Trujillo Bueno (2013).
PREFACE: 8th International Conference on 3D Radiation Dosimetry (IC3DDose)
NASA Astrophysics Data System (ADS)
Olsson, Lars E.; Bäck, S.; Ceberg, Sofie
2015-01-01
IC3DDose 2014, the 8th International Conference on 3D Radiation Dosimetry was held in Ystad, Sweden, from 4-7 September 2014. This grew out of the DosGel series, which began as DosGel99, the 1st International Workshop on Radiation Therapy Gel Dosimetry in Lexington, Kentucky. Since 1999 subsequent DoSGel conferences were held in Brisbane, Australia (2001), Ghent, Belgium (2004), Sherbrooke, Canada (2006) and Crete, Greece (2008). In 2010 the conference was held on Hilton Head Island, South Carolina and underwent a name-change to IC3DDose. The 7th and last meeting was held in Sydney, Australia from 4-8 November 2012. It is worth remembering that the conference series started at the very beginning of the intensity modulated radiotherapy era and that the dosimeters being developed then were, to some extent, ahead of the clinical need of radiotherapy. However, since then the technical developments in radiation therapy have been dramatic, with dynamic treatments, including tracking, gating and volumetric modulated arc therapy, widely introduced in the clinic with the need for 3D dosimetry thus endless. This was also reflected by the contributions at the meeting in Ystad. Accordingly the scope of the meeting has also broadened to IC3DDOSE - I See Three-Dimensional Dose. A multitude of dosimetry techniques and radiation detectors are now represented, all with the common denominator: three-dimensional or 3D. Additionally, quality assurance (QA) procedures and other aspects of clinical dosimetry are represented. The implementation of new dosimetric techniques in radiotherapy is a process that needs every kind of caution, carefulness and thorough validation. Therefore, the clinical needs, reformulated as the aims for IC3DDOSE - I See Three-Dimensional Dose, are: • Enhance the quality and accuracy of radiation therapy treatments through improved clinical dosimetry. • Investigate and understand the dosimetric challenges of modern radiation treatment techniques. • Provide
Wakefield Simulation of CLIC PETS Structure Using Parallel 3D Finite Element Time-Domain Solver T3P
Candel, A.; Kabel, A.; Lee, L.; Li, Z.; Ng, C.; Schussman, G.; Ko, K.; Syratchev, I.; /CERN
2009-06-19
In recent years, SLAC's Advanced Computations Department (ACD) has developed the parallel 3D Finite Element electromagnetic time-domain code T3P. Higher-order Finite Element methods on conformal unstructured meshes and massively parallel processing allow unprecedented simulation accuracy for wakefield computations and simulations of transient effects in realistic accelerator structures. Applications include simulation of wakefield damping in the Compact Linear Collider (CLIC) power extraction and transfer structure (PETS).
A simulation technique for 3D MR-guided acoustic radiation force imaging
Payne, Allison; de Bever, Josh; Farrer, Alexis; Coats, Brittany; Parker, Dennis L.; Christensen, Douglas A.
2015-01-01
Purpose: In magnetic resonance-guided focused ultrasound (MRgFUS) therapies, the in situ characterization of the focal spot location and quality is critical. MR acoustic radiation force imaging (MR-ARFI) is a technique that measures the tissue displacement caused by the radiation force exerted by the ultrasound beam. This work presents a new technique to model the displacements caused by the radiation force of an ultrasound beam in a homogeneous tissue model. Methods: When a steady-state point-source force acts internally in an infinite homogeneous medium, the displacement of the material in all directions is given by the Somigliana elastostatic tensor. The radiation force field, which is caused by absorption and reflection of the incident ultrasound intensity pattern, will be spatially distributed, and the tensor formulation takes the form of a convolution of a 3D Green’s function with the force field. The dynamic accumulation of MR phase during the ultrasound pulse can be theoretically accounted for through a time-of-arrival weighting of the Green’s function. This theoretical model was evaluated experimentally in gelatin phantoms of varied stiffness (125-, 175-, and 250-bloom). The acoustic and mechanical properties of the phantoms used as parameters of the model were measured using independent techniques. Displacements at focal depths of 30- and 45-mm in the phantoms were measured by a 3D spin echo MR-ARFI segmented-EPI sequence. Results: The simulated displacements agreed with the MR-ARFI measured displacements for all bloom values and focal depths with a normalized RMS difference of 0.055 (range 0.028–0.12). The displacement magnitude decreased and the displacement pattern broadened with increased bloom value for both focal depths, as predicted by the theory. Conclusions: A new technique that models the displacements caused by the radiation force of an ultrasound beam in a homogeneous tissue model theory has been rigorously validated through comparison
A simulation technique for 3D MR-guided acoustic radiation force imaging
Payne, Allison; Bever, Josh de; Farrer, Alexis; Coats, Brittany; Parker, Dennis L.; Christensen, Douglas A.
2015-02-15
Purpose: In magnetic resonance-guided focused ultrasound (MRgFUS) therapies, the in situ characterization of the focal spot location and quality is critical. MR acoustic radiation force imaging (MR-ARFI) is a technique that measures the tissue displacement caused by the radiation force exerted by the ultrasound beam. This work presents a new technique to model the displacements caused by the radiation force of an ultrasound beam in a homogeneous tissue model. Methods: When a steady-state point-source force acts internally in an infinite homogeneous medium, the displacement of the material in all directions is given by the Somigliana elastostatic tensor. The radiation force field, which is caused by absorption and reflection of the incident ultrasound intensity pattern, will be spatially distributed, and the tensor formulation takes the form of a convolution of a 3D Green’s function with the force field. The dynamic accumulation of MR phase during the ultrasound pulse can be theoretically accounted for through a time-of-arrival weighting of the Green’s function. This theoretical model was evaluated experimentally in gelatin phantoms of varied stiffness (125-, 175-, and 250-bloom). The acoustic and mechanical properties of the phantoms used as parameters of the model were measured using independent techniques. Displacements at focal depths of 30- and 45-mm in the phantoms were measured by a 3D spin echo MR-ARFI segmented-EPI sequence. Results: The simulated displacements agreed with the MR-ARFI measured displacements for all bloom values and focal depths with a normalized RMS difference of 0.055 (range 0.028–0.12). The displacement magnitude decreased and the displacement pattern broadened with increased bloom value for both focal depths, as predicted by the theory. Conclusions: A new technique that models the displacements caused by the radiation force of an ultrasound beam in a homogeneous tissue model theory has been rigorously validated through comparison
Evaluation of a 3D diamond detector for medical radiation dosimetry
NASA Astrophysics Data System (ADS)
Kanxheri, K.; Servoli, L.; Oh, A.; Munoz Sanchez, F.; Forcolin, G. T.; Murphy, S. A.; Aitkenhead, A.; Moore, C. J.; Morozzi, A.; Passeri, D.; Bellini, M.; Corsi, C.; Lagomarsino, S.; Sciortino, S.
2017-01-01
Synthetic diamond has several properties that are particularly suited to applications in medical radiation dosimetry. It is tissue equivalent, not toxic and shows a high resistance to radiation damage, low leakage current and stability of response. It is an electrical insulator, robust and realizable in small size; due to these features there are several examples of diamond devices, mainly planar single-crystalline chemical vapor depositation (sCVD) diamond, used for relative dose measurement in photon beams. Thanks to a new emerging technology, diamond devices with 3-dimensional structures are produced by using laser pulses to create graphitic paths in the diamond bulk. The necessary bias voltage to operate such detector decreases considerably while the signal response and radiation resistance increase. In order to evaluate the suitability of this new technology for measuring the dose delivered by radiotherapy beams in oncology a 3D polycrystalline (pCVD) diamond detector designed for single charged particle detection has been tested and the photon beam profile has been studied. The good linearity and high sensitivity to the dose observed in the 3D diamond, opens the way to the possibility of realizing a finely segmented device with the potential for dose distribution measurement in a single exposure for small field dosimetry that nowadays is still extremely challenging.
Parameterization of Solar Radiative Fluxes For 3d-inhomogeneous Clouds
NASA Astrophysics Data System (ADS)
Schewski, M.; Macke, A.
radiative fluxes for 3d clouds appears to be a promis- ing approach.
Characterization of a parallel beam CCD optical-CT apparatus for 3D radiation dosimetry
NASA Astrophysics Data System (ADS)
Krstajić, Nikola; Doran, Simon J.
2006-12-01
This paper describes the initial steps we have taken in establishing CCD based optical-CT as a viable alternative for 3-D radiation dosimetry. First, we compare the optical density (OD) measurements from a high quality test target and variable neutral density filter (VNDF). A modulation transfer function (MTF) of individual projections is derived for three positions of the sinusoidal test target within the scanning tank. Our CCD is then characterized in terms of its signal-to-noise ratio (SNR). Finally, a sample reconstruction of a scan of a PRESAGETM (registered trademark of Heuris Pharma, NJ, Skillman, USA.) dosimeter is given, demonstrating the capabilities of the apparatus.
NASA Astrophysics Data System (ADS)
Vanzo, Davide; Siviglia, Annunziato; Toro, Eleuterio F.
2016-09-01
The purpose of this paper is twofold. First, using the Cattaneo's relaxation approach, we reformulate the system of governing equations for the pollutant transport by shallow water flows over non-flat topography and anisotropic diffusion as hyperbolic balance laws with stiff source terms. The proposed relaxation system circumvents the infinite wave speed paradox which is inherent in standard advection-diffusion models. This turns out to give a larger stability range for the choice of the time step. Second, following a flux splitting approach, we derive a novel numerical method to discretise the resulting problem. In particular, we propose a new flux splitting and study the associated two systems of differential equations, called the ;hydrodynamic; and the ;relaxed diffusive; system, respectively. For the presented splitting we analyse the resulting two systems of differential equations and propose two discretisation schemes of the Godunov-type. These schemes are simple to implement, robust, accurate and fast when compared with existing methods. The resulting method is implemented on unstructured meshes and is systematically assessed for accuracy, robustness and efficiency on a carefully selected suite of test problems including non-flat topography and wetting and drying problems. Formal second order accuracy is assessed through convergence rates studies.
A 3-D liver segmentation method with parallel computing for selective internal radiation therapy.
Goryawala, Mohammed; Guillen, Magno R; Cabrerizo, Mercedes; Barreto, Armando; Gulec, Seza; Barot, Tushar C; Suthar, Rekha R; Bhatt, Ruchir N; Mcgoron, Anthony; Adjouadi, Malek
2012-01-01
This study describes a new 3-D liver segmentation method in support of the selective internal radiation treatment as a treatment for liver tumors. This 3-D segmentation is based on coupling a modified k-means segmentation method with a special localized contouring algorithm. In the segmentation process, five separate regions are identified on the computerized tomography image frames. The merit of the proposed method lays in its potential to provide fast and accurate liver segmentation and 3-D rendering as well as in delineating tumor region(s), all with minimal user interaction. Leveraging of multicore platforms is shown to speed up the processing of medical images considerably, making this method more suitable in clinical settings. Experiments were performed to assess the effect of parallelization using up to 442 slices. Empirical results, using a single workstation, show a reduction in processing time from 4.5 h to almost 1 h for a 78% gain. Most important is the accuracy achieved in estimating the volumes of the liver and tumor region(s), yielding an average error of less than 2% in volume estimation over volumes generated on the basis of the current manually guided segmentation processes. Results were assessed using the analysis of variance statistical analysis.
Recent Developments in the VISRAD 3-D Target Design and Radiation Simulation Code
NASA Astrophysics Data System (ADS)
Macfarlane, Joseph; Woodruff, P.; Golovkin, I.
2011-10-01
The 3-D view factor code VISRAD is widely used in designing HEDP experiments at major laser and pulsed-power facilities, including NIF, OMEGA, OMEGA-EP, ORION, Z, and PLX. It simulates target designs by generating a 3-D grid of surface elements, utilizing a variety of 3-D primitives and surface removal algorithms, and can be used to compute the radiation flux throughout the surface element grid by computing element-to-element view factors and solving power balance equations. Target set-up and beam pointing are facilitated by allowing users to specify positions and angular orientations using a variety of coordinates systems (e . g . , that of any laser beam, target component, or diagnostic port). Analytic modeling for laser beam spatial profiles for OMEGA DPPs and NIF CPPs is used to compute laser intensity profiles throughout the grid of surface elements. VISRAD includes a variety of user-friendly graphics for setting up targets and displaying results, can readily display views from any point in space, and can be used to generate image sequences for animations. We will discuss recent improvements to the software package and plans for future developments.
Radiation Quality Effects on Transcriptome Profiles in 3-d Cultures After Particle Irradiation
NASA Technical Reports Server (NTRS)
Patel, Z. S.; Kidane, Y. H.; Huff, J. L.
2014-01-01
In this work, we evaluate the differential effects of low- and high-LET radiation on 3-D organotypic cultures in order to investigate radiation quality impacts on gene expression and cellular responses. Reducing uncertainties in current risk models requires new knowledge on the fundamental differences in biological responses (the so-called radiation quality effects) triggered by heavy ion particle radiation versus low-LET radiation associated with Earth-based exposures. We are utilizing novel 3-D organotypic human tissue models that provide a format for study of human cells within a realistic tissue framework, thereby bridging the gap between 2-D monolayer culture and animal models for risk extrapolation to humans. To identify biological pathway signatures unique to heavy ion particle exposure, functional gene set enrichment analysis (GSEA) was used with whole transcriptome profiling. GSEA has been used extensively as a method to garner biological information in a variety of model systems but has not been commonly used to analyze radiation effects. It is a powerful approach for assessing the functional significance of radiation quality-dependent changes from datasets where the changes are subtle but broad, and where single gene based analysis using rankings of fold-change may not reveal important biological information. We identified 45 statistically significant gene sets at 0.05 q-value cutoff, including 14 gene sets common to gamma and titanium irradiation, 19 gene sets specific to gamma irradiation, and 12 titanium-specific gene sets. Common gene sets largely align with DNA damage, cell cycle, early immune response, and inflammatory cytokine pathway activation. The top gene set enriched for the gamma- and titanium-irradiated samples involved KRAS pathway activation and genes activated in TNF-treated cells, respectively. Another difference noted for the high-LET samples was an apparent enrichment in gene sets involved in cycle cycle/mitotic control. It is
Time-Accurate, Unstructured-Mesh Navier-Stokes Computations with the Space-Time CESE Method
NASA Technical Reports Server (NTRS)
Chang, Chau-Lyan
2006-01-01
Application of the newly emerged space-time conservation element solution element (CESE) method to compressible Navier-Stokes equations is studied. In contrast to Euler equations solvers, several issues such as boundary conditions, numerical dissipation, and grid stiffness warrant systematic investigations and validations. Non-reflecting boundary conditions applied at the truncated boundary are also investigated from the stand point of acoustic wave propagation. Validations of the numerical solutions are performed by comparing with exact solutions for steady-state as well as time-accurate viscous flow problems. The test cases cover a broad speed regime for problems ranging from acoustic wave propagation to 3D hypersonic configurations. Model problems pertinent to hypersonic configurations demonstrate the effectiveness of the CESE method in treating flows with shocks, unsteady waves, and separations. Good agreement with exact solutions suggests that the space-time CESE method provides a viable alternative for time-accurate Navier-Stokes calculations of a broad range of problems.
Displaying 3D radiation dose on endoscopic video for therapeutic assessment and surgical guidance.
Qiu, Jimmy; Hope, Andrew J; Cho, B C John; Sharpe, Michael B; Dickie, Colleen I; DaCosta, Ralph S; Jaffray, David A; Weersink, Robert A
2012-10-21
We have developed a method to register and display 3D parametric data, in particular radiation dose, on two-dimensional endoscopic images. This registration of radiation dose to endoscopic or optical imaging may be valuable in assessment of normal tissue response to radiation, and visualization of radiated tissues in patients receiving post-radiation surgery. Electromagnetic sensors embedded in a flexible endoscope were used to track the position and orientation of the endoscope allowing registration of 2D endoscopic images to CT volumetric images and radiation doses planned with respect to these images. A surface was rendered from the CT image based on the air/tissue threshold, creating a virtual endoscopic view analogous to the real endoscopic view. Radiation dose at the surface or at known depth below the surface was assigned to each segment of the virtual surface. Dose could be displayed as either a colorwash on this surface or surface isodose lines. By assigning transparency levels to each surface segment based on dose or isoline location, the virtual dose display was overlaid onto the real endoscope image. Spatial accuracy of the dose display was tested using a cylindrical phantom with a treatment plan created for the phantom that matched dose levels with grid lines on the phantom surface. The accuracy of the dose display in these phantoms was 0.8-0.99 mm. To demonstrate clinical feasibility of this approach, the dose display was also tested on clinical data of a patient with laryngeal cancer treated with radiation therapy, with estimated display accuracy of ∼2-3 mm. The utility of the dose display for registration of radiation dose information to the surgical field was further demonstrated in a mock sarcoma case using a leg phantom. With direct overlay of radiation dose on endoscopic imaging, tissue toxicities and tumor response in endoluminal organs can be directly correlated with the actual tissue dose, offering a more nuanced assessment of normal tissue
Microstructure analysis of the secondary pulmonary lobules by 3D synchrotron radiation CT
NASA Astrophysics Data System (ADS)
Fukuoka, Y.; Kawata, Y.; Niki, N.; Umetani, K.; Nakano, Y.; Ohmatsu, H.; Moriyama, N.; Itoh, H.
2014-03-01
Recognition of abnormalities related to the lobular anatomy has become increasingly important in the diagnosis and differential diagnosis of lung abnormalities at clinical routines of CT examinations. This paper aims a 3-D microstructural analysis of the pulmonary acinus with isotropic spatial resolution in the range of several micrometers by using micro CT. Previously, we demonstrated the ability of synchrotron radiation micro CT (SRμCT) using offset scan mode in microstructural analysis of the whole part of the secondary pulmonary lobule. In this paper, we present a semiautomatic method to segment the acinar and subacinar airspaces from the secondary pulmonary lobule and to track small vessels running inside alveolar walls in human acinus imaged by the SRμCT. The method beains with and segmentation of the tissues such as pleural surface, interlobular septa, alveola wall, or vessel using a threshold technique and 3-D connected component analysis. 3-D air space are then conustructed separated by tissues and represented branching patterns of airways and airspaces distal to the terminal bronchiole. A graph-partitioning approach isolated acini whose stems are interactively defined as the terminal bronchiole in the secondary pulmonary lobule. Finally, we performed vessel tracking using a non-linear sate space which captures both smoothness of the trajectories and intensity coherence along vessel orientations. Results demonstrate that the proposed method can extract several acinar airspaces from the 3-D SRμCT image of secondary pulmonary lobule and that the extracted acinar airspace enable an accurate quantitative description of the anatomy of the human acinus for interpretation of the basic unit of pulmonary structure and function.
Characterisation of PRESAGE: A new 3-D radiochromic solid polymer dosemeter for ionising radiation.
Adamovics, J; Maryanski, M J
2006-01-01
For the past 50 years there has been interest in developing 3-D dosemeters for ionising radiation. Particular emphasis has been put on those dosemeters that change their optical properties in proportion to the absorbed dose. Many of the dosemeters that have been evaluated have had limitations such as lack of transparency, diffusion of the image of the dose distribution or poor stability of baseline optical density. Many of these performance limitations have been overcome by the development of PRESAGE, an optically clear polyurethane-based radiochromic 3-D dosemeter. The solid PRESAGE dosemeter is formulated with a free radical initiator and a leuco dye and it does not require a container to maintain its shape. The polyurethane matrix is tissue equivalent and prevents the diffusion of the dose distribution image. There is a linear dose-response, which is independent of both photon energy and dose rate. Simple precautions such as preventing long-term exposure to additional ionising radiation including ultraviolet and controlling storage temperatures prevent the bleaching of the radiochromic response field within the irradiated dosemeter.
Analysis of the radiative lifetime of Pr{sup 3+} d-f emission
Zych, Aleksander; Lange, Matthijs de; Mello Donega, Celso de; Meijerink, Andries
2012-07-01
The radiative lifetime of excited states is governed by Fermi's Golden Rule. For many applications, the radiative decay rate is an important parameter. For example, for scintillators materials in PET scanners, a short response time is crucial and it has been realized that the d-f emission of Pr{sup 3+} is faster than for the widely applied d-f emission from Ce{sup 3+}. In this paper, the radiative decay rate of d-f emission from Pr{sup 3+} is systematically investigated in a wide variety of host lattices, including scintillators materials. The variation in the decay rate is analyzed based on Fermi's Golden Rule. The trend observed is best described using a full cavity model to correct for local-field effects and a {lambda}{sup 3} factor to account for the energy of the transition. Still, there is a considerable scatter of the experimental data around the best fit to these data. The variation is explained by uncertainties in the refractive indices and a variation in the transition dipole moment of the d-f transition for Pr{sup 3+}. Based on the results, the shortest radiative lifetime that can be achieved for Pr{sup 3+} d-f emission is predicted to be {approx}6 ns.
Radiation-induced second cancers: the impact of 3D-CRT and IMRT
NASA Technical Reports Server (NTRS)
Hall, Eric J.; Wuu, Cheng-Shie
2003-01-01
Information concerning radiation-induced malignancies comes from the A-bomb survivors and from medically exposed individuals, including second cancers in radiation therapy patients. The A-bomb survivors show an excess incidence of carcinomas in tissues such as the gastrointestinal tract, breast, thyroid, and bladder, which is linear with dose up to about 2.5 Sv. There is great uncertainty concerning the dose-response relationship for radiation-induced carcinogenesis at higher doses. Some animal and human data suggest a decrease at higher doses, usually attributed to cell killing; other data suggest a plateau in dose. Radiotherapy patients also show an excess incidence of carcinomas, often in sites remote from the treatment fields; in addition there is an excess incidence of sarcomas in the heavily irradiated in-field tissues. The transition from conventional radiotherapy to three-dimensional conformal radiation therapy (3D-CRT) involves a reduction in the volume of normal tissues receiving a high dose, with an increase in dose to the target volume that includes the tumor and a limited amount of normal tissue. One might expect a decrease in the number of sarcomas induced and also (less certain) a small decrease in the number of carcinomas. All around, a good thing. By contrast, the move from 3D-CRT to intensity-modulated radiation therapy (IMRT) involves more fields, and the dose-volume histograms show that, as a consequence, a larger volume of normal tissue is exposed to lower doses. In addition, the number of monitor units is increased by a factor of 2 to 3, increasing the total body exposure, due to leakage radiation. Both factors will tend to increase the risk of second cancers. Altogether, IMRT is likely to almost double the incidence of second malignancies compared with conventional radiotherapy from about 1% to 1.75% for patients surviving 10 years. The numbers may be larger for longer survival (or for younger patients), but the ratio should remain the same.
The Secular Changes of the 3-D Profile of the Synchrotron Radiation around Jupiter.
NASA Astrophysics Data System (ADS)
Dunn, D. E.; de Pater, I.; Sault, R. J.
2000-10-01
We present a summary of Jupiter data taken over a seventeen year span (1981-1998) by the Very Large Array at ~ 20.0 cm. At this wavelength the emission is dominated by synchrotron radiation, which is roughly proportional to the product of the electron number density and magnetic field strength (Ne B). At each epoch 8--12 hours of data were taken, which allowed us to examine Jupiter during an entire rotation period. We mapped the azimuthal structure of the synchrotron radiation by using a 3-D reconstruction techinique developed by Sault et al. (AA 324 1190--1196, 1997). We have applied this technique to all the data to produce plots of the latitude, radial distance, and peak intensity vs. Jovian longitude (System III). The results show a remarkable constancy of the shape of the synchrotron radiation and hence both the particle distribution and magnetic field. Throughout all epochs, the data show nearly the same latitudinal structure. Furthermore, the radial distance of the synchrotron radiation has generally remained the same in the 17-year span. As we expected, the only change appears to have been the intensity of the synchrotron radiation as a function of time. There are certain epochs (e.g. 1987) which seem clearly (though modestly) brighter than others (e.g. 1981, 1995) at all longitudes. Does this suggest a seasonal or other periodic effect on Jupiter? Also seen is an expected anti-correlation between the azimuthally averaged radial distance and azimuthally averaged peak intensity of the synchrotron radiation. We examine these trends by comparing the data to radial diffusion models. The data analysis and research has been supported by NASA grant NAG5-6890.
NASA Astrophysics Data System (ADS)
Narayan, Ramesh; Zhu, Yucong; Psaltis, Dimitrios; Saḑowski, Aleksander
2016-03-01
We describe Hybrid Evaluator for Radiative Objects Including Comptonization (HEROIC), an upgraded version of the relativistic radiative post-processor code HERO described in a previous paper, but which now Includes Comptonization. HEROIC models Comptonization via the Kompaneets equation, using a quadratic approximation for the source function in a short characteristics radiation solver. It employs a simple form of accelerated lambda iteration to handle regions of high scattering opacity. In addition to solving for the radiation field, HEROIC also solves for the gas temperature by applying the condition of radiative equilibrium. We present benchmarks and tests of the Comptonization module in HEROIC with simple 1D and 3D scattering problems. We also test the ability of the code to handle various relativistic effects using model atmospheres and accretion flows in a black hole space-time. We present two applications of HEROIC to general relativistic magnetohydrodynamics simulations of accretion discs. One application is to a thin accretion disc around a black hole. We find that the gas below the photosphere in the multidimensional HEROIC solution is nearly isothermal, quite different from previous solutions based on 1D plane parallel atmospheres. The second application is to a geometrically thick radiation-dominated accretion disc accreting at 11 times the Eddington rate. Here, the multidimensional HEROIC solution shows that, for observers who are on axis and look down the polar funnel, the isotropic equivalent luminosity could be more than 10 times the Eddington limit, even though the spectrum might still look thermal and show no signs of relativistic beaming.
3D quantification of brain microvessels exposed to heavy particle radiation
NASA Astrophysics Data System (ADS)
Hintermüller, C.; Coats, J. S.; Obenaus, A.; Nelson, G.; Krucker, T.; Stampanoni, M.
2009-09-01
Space radiation with high energy particles and cosmic rays presents a significant hazard to spaceflight crews. Recent reviews of the health risk to astronauts from ionizing radiation concluded to establish a level of risk which may indicate the possible performance decrements and decreased latency of late dysfunction syndromes (LDS) of the brain. A hierarchical imaging approach developed at ETH Zürich and PSI, which relies on synchrotron based X-ray Tomographic Microscopy (SRXTM), was used to visualize and analyze 3D vascular structures down to the capillary level in their precise anatomical context. Various morphological parameters, such as overall vessel volume, vessel thickness and spacing, are extracted to characterize the vascular structure within a region of interest. For a first quantification of the effect of high energy particles on the vasculature we scanned a set of 6 animals, all of same age. The animals were irradiated with 1 Gy, 2 Gy and 4 Gy of 600MeV 56Fe heavy particles simulating the space radiation environment. We found that with increasing dose the diameter of vessels and the overall vessel volume are decreased whereas the vessel spacing is increased. As these parameters reflect blood flow in three-dimensional space they can be used as indicators for the degree of vascular efficiency which can have an impact on the function and development of lung tissue or tumors.
New Insights on Pulsating White Dwarfs from 3D Radiation-Hydrodynamical Simulations
NASA Astrophysics Data System (ADS)
Tremblay, Pier-Emmanuel; Fontaine, Gilles; Ludwig, Hans-Günter
2015-08-01
We have recently computed a grid of 3D radiation-hydrodynamical simulations for the atmosphere of 70 pure-hydrogen DA white dwarfs in the range 7.0 < log g < 9.0. This includes the full ZZ Ceti instability strip where DA white dwarfs are pulsating, by far the most common type of degenerate pulsators. We have significantly improved the theoretical framework to study these objects by removing the free parameters of 1D convection, which were previously a major modeling hurdle. We will compare our new models with the observed sample of ZZ Ceti stars and highlight the improved derived properties of these objects. In particular, the new spectroscopically determined 3D atmospheric parameters allow for an improved definition of instability strip edges. We have also made new predictions for the size of convection zones, which significantly impact the position where the pulsations are driven, and the region of the HR diagram where white dwarfs are expected to pulsate. Finally, we will present new results from non-adiabatic pulsation calculations.
Post-processing of 3D-printed parts using femtosecond and picosecond laser radiation
NASA Astrophysics Data System (ADS)
Mingareev, Ilya; Gehlich, Nils; Bonhoff, Tobias; Meiners, Wilhelm; Kelbassa, Ingomar; Biermann, Tim; Richardson, Martin C.
2014-03-01
Additive manufacturing, also known as 3D-printing, is a near-net shape manufacturing approach, delivering part geometry that can be considerably affected by various process conditions, heat-induced distortions, solidified melt droplets, partially fused powders, and surface modifications induced by the manufacturing tool motion and processing strategy. High-repetition rate femtosecond and picosecond laser radiation was utilized to improve surface quality of metal parts manufactured by laser additive techniques. Different laser scanning approaches were utilized to increase the ablation efficiency and to reduce the surface roughness while preserving the initial part geometry. We studied post-processing of 3D-shaped parts made of Nickel- and Titanium-base alloys by utilizing Selective Laser Melting (SLM) and Laser Metal Deposition (LMD) as additive manufacturing techniques. Process parameters such as the pulse energy, the number of layers and their spatial separation were varied. Surface processing in several layers was necessary to remove the excessive material, such as individual powder particles, and to reduce the average surface roughness from asdeposited 22-45 μm to a few microns. Due to the ultrafast laser-processing regime and the small heat-affected zone induced in materials, this novel integrated manufacturing approach can be used to post-process parts made of thermally and mechanically sensitive materials, and to attain complex designed shapes with micrometer precision.
NASA Astrophysics Data System (ADS)
Salinas, P.; Jackson, M.; Pavlidis, D.; Pain, C.; Adam, A.; Xie, Z.; Percival, J. R.
2015-12-01
We present a new, high-order, control-volume-finite-element (CVFE) method with discontinuous representation for pressure and velocity to simulate multiphase flow in heterogeneous porous media. Time is discretized using an adaptive, fully implicit method. Heterogeneous geologic features are represented as volumes bounded by surfaces. Within these volumes, termed geologic domains, the material properties are constant. A given model typically contains numerous such geologic domains. Our approach conserves mass and does not require the use of CVs that span domain boundaries. Computational efficiency is increased by use of dynamic mesh optimization, in which an unstructured mesh adapts in space and time to key solution fields, such as pressure, velocity or saturation, whilst preserving the geometry of the geologic domains. Up-, cross- or down-scaling of material properties during mesh optimization is not required, as the properties are uniform within each geologic domain. We demonstrate that the approach, amongst other features, accurately preserves sharp saturation changes associated with high aspect ratio geologic domains such as fractures and mudstones, allowing efficient simulation of flow in highly heterogeneous models. Moreover, accurate solutions are obtained at significantly lower computational cost than an equivalent fine, fixed mesh and conventional CVFE methods. The use of implicit time integration allows the method to efficiently converge using highly anisotropic meshes without having to reduce the time-step. The work is significant for two key reasons. First, it resolves a long-standing problem associated with the use of classical CVFE methods to model flow in highly heterogeneous porous media, in which CVs span boundaries between domains of contrasting material properties. Second, it reduces computational cost/increases solution accuracy through the use of dynamic mesh optimization and time-stepping with large Courant number.
NASA Astrophysics Data System (ADS)
Kawasuso, A.; Maekawa, M.; Fukaya, Y.; Yabuuchi, A.; Mochizuki, I.
2012-01-01
We measured the Doppler broadening of annihilation radiation (DBAR) spectra of 3d (Fe, Co, and Ni) and 4f (Gd, Tb, and Dy) ferromagnets under a magnetic field by using spin-polarized positrons from a 68Ge-68Ga source. The results showed that the DBAR spectra of these metals have notably different magnetic-field dependences. The differences among Fe, Co, and Ni reflect that the upper minority spin bands of Fe and Co are nearly empty while those of Ni are still mostly occupied. For the rare-earth metals instead of the inner 4f electrons, 5d electrons that mediate the exchange interaction of the 4f electrons are primarily responsible for the magnetic-field effects on the DBAR spectra. Furthermore, the magnetic-field effects on the DBAR spectra of Gd, Tb, and Dy vanished above the Curie temperatures of the magnetic-phase transition for these metals.
An investigation of PRESAGE® 3D dosimetry for IMRT and VMAT radiation therapy treatment verification
NASA Astrophysics Data System (ADS)
Jackson, Jake; Juang, Titania; Adamovics, John; Oldham, Mark
2015-03-01
The purpose of this work was to characterize three formulations of PRESAGE® dosimeters (DEA-1, DEA-2, and DX) and to identify optimal readout timing and procedures for accurate in-house 3D dosimetry. The optimal formulation and procedure was then applied for the verification of an intensity modulated radiation therapy (IMRT) and a volumetric modulated arc therapy (VMAT) treatment technique. PRESAGE® formulations were studied for their temporal stability post-irradiation, sensitivity, and linearity of dose response. Dosimeters were read out using a high-resolution optical-CT scanner. Small volumes of PRESAGE® were irradiated to investigate possible differences in sensitivity for large and small volumes (‘volume effect’). The optimal formulation and read-out technique was applied to the verification of two patient treatments: an IMRT plan and a VMAT plan. A gradual decrease in post-irradiation optical-density was observed in all formulations with DEA-1 exhibiting the best temporal stability with less than 4% variation between 2-22 h post-irradiation. A linear dose response at the 4 h time point was observed for all formulations with an R2 value >0.99. A large volume effect was observed for DEA-1 with sensitivity of the large dosimeter being ~63% less than the sensitivity of the cuvettes. For the IMRT and VMAT treatments, the 3D gamma passing rates for 3%/3 mm criteria using absolute measured dose were 99.6 and 94.5% for the IMRT and VMAT treatments, respectively. In summary, this work shows that accurate 3D dosimetry is possible with all three PRESAGE® formulations. The optimal imaging windows post-irradiation were 3-24 h, 2-6 h, and immediately for the DEA-1, DEA-2, and DX formulations, respectively. Because of the large volume effect, small volume cuvettes are not yet a reliable method for calibration of larger dosimeters to absolute dose. Finally, PRESAGE® is observed to be a useful method of 3D verification when careful consideration is given
An investigation of PRESAGE® 3D dosimetry for IMRT and VMAT radiation therapy treatment verification
Jackson, Jake; Juang, Titania; Adamovics, John; Oldham, Mark
2016-01-01
The purpose of this work was to characterize three formulations of PRESAGE® dosimeters (DEA-1, DEA-2, and DX) and to identify optimal readout timing and procedures for accurate in-house 3D dosimetry. The optimal formulation and procedure was then applied for the verification of an intensity modulated radiation therapy (IMRT) and a volumetric modulated arc therapy (VMAT) treatment technique. PRESAGE® formulations were studied for their temporal stability postirradiation, sensitivity, and linearity of dose response. Dosimeters were read out using a high-resolution optical-CT scanner. Small volumes of PRESAGE® were irradiated to investigate possible differences in sensitivity for large and small volumes (‘volume effect’). The optimal formulation and read-out technique was applied to the verification of two patient treatments: an IMRT plan and a VMAT plan. A gradual decrease in post-irradiation optical-density was observed in all formulations with DEA-1 exhibiting the best temporal stability with less than 4% variation between 2–22 h post-irradiation. A linear dose response at the 4 h time point was observed for all formulations with an R2 value >0.99. A large volume effect was observed for DEA-1 with sensitivity of the large dosimeter being ~63% less than the sensitivity of the cuvettes. For the IMRT and VMAT treatments, the 3D gamma passing rates for 3%/3 mm criteria using absolute measured dose were 99.6 and 94.5% for the IMRT and VMAT treatments, respectively. In summary, this work shows that accurate 3D dosimetry is possible with all three PRESAGE® formulations. The optimal imaging windows post-irradiation were 3–24 h, 2–6 h, and immediately for the DEA-1, DEA-2, and DX formulations, respectively. Because of the large volume effect, small volume cuvettes are not yet a reliable method for calibration of larger dosimeters to absolute dose. Finally, PRESAGE® is observed to be a useful method of 3D verification when careful consideration is given to the
Development of a patient-specific 3D dose evaluation program for QA in radiation therapy
NASA Astrophysics Data System (ADS)
Lee, Suk; Chang, Kyung Hwan; Cao, Yuan Jie; Shim, Jang Bo; Yang, Dae Sik; Park, Young Je; Yoon, Won Sup; Kim, Chul Yong
2015-03-01
We present preliminary results for a 3-dimensional dose evaluation software system ( P DRESS, patient-specific 3-dimensional dose real evaluation system). Scanned computed tomography (CT) images obtained by using dosimetry were transferred to the radiation treatment planning system (ECLIPSE, VARIAN, Palo Alto, CA) where the intensity modulated radiation therapy (IMRT) nasopharynx plan was designed. We used a 10 MV photon beam (CLiX, VARIAN, Palo Alto, CA) to deliver the nasopharynx treatment plan. After irradiation, the TENOMAG dosimeter was scanned using a VISTA ™ scanner. The scanned data were reconstructed using VistaRecon software to obtain a 3D dose distribution of the optical density. An optical-CT scanner was used to readout the dose distribution in the gel dosimeter. Moreover, we developed the P DRESS by using Flatform, which were developed by our group, to display the 3D dose distribution by loading the DICOM RT data which are exported from the radiotherapy treatment plan (RTP) and the optical-CT reconstructed VFF file, into the independent P DRESS with an ioniz ation chamber and EBT film was used to compare the dose distribution calculated from the RTP with that measured by using a gel dosimeter. The agreement between the normalized EBT, the gel dosimeter and RTP data was evaluated using both qualitative and quantitative methods, such as the isodose distribution, dose difference, point value, and profile. The profiles showed good agreement between the RTP data and the gel dosimeter data, and the precision of the dose distribution was within ±3%. The results from this study showed significantly discrepancies between the dose distribution calculated from the treatment plan and the dose distribution measured by a TENOMAG gel and by scanning with an optical CT scanner. The 3D dose evaluation software system ( P DRESS, patient specific dose real evaluation system), which were developed in this study evaluates the accuracies of the three-dimensional dose
NASA Astrophysics Data System (ADS)
Jinya, John; Bipasha, Paul S.
2016-05-01
Clouds strongly modulate the Earths energy balance and its atmosphere through their interaction with the solar and terrestrial radiation. They interact with radiation in various ways like scattering, emission and absorption. By observing these changes in radiation at different wavelength, cloud properties can be estimated. Cloud properties are of utmost importance in studying different weather and climate phenomena. At present, no satellite provides cloud microphysical parameters over the Indian region with high temporal resolution. INSAT-3D imager observations in 6 spectral channels from geostationary platform offer opportunity to study continuous cloud properties over Indian region. Visible (0.65 μm) and shortwave-infrared (1.67 μm) channel radiances can be used to retrieve cloud microphysical parameters such as cloud optical thickness (COT) and cloud effective radius (CER). In this paper, we have carried out a feasibility study with the objective of cloud microphysics retrieval. For this, an inter-comparison of 15 globally available radiative transfer models (RTM) were carried out with the aim of generating a Look-up- Table (LUT). SBDART model was chosen for the simulations. The sensitivity of each spectral channel to different cloud properties was investigated. The inputs to the RT model were configured over our study region (50°S - 50°N and 20°E - 130°E) and a large number of simulations were carried out using random input vectors to generate the LUT. The determination of cloud optical thickness and cloud effective radius from spectral reflectance measurements constitutes the inverse problem and is typically solved by comparing the measured reflectances with entries in LUT and searching for the combination of COT and CER that gives the best fit. The products are available on the website www.mosdac.gov.in
Michalski, Jeff; Winter, Kathryn; Roach, Mack; Markoe, Arnold; Sandler, Howard M.; Ryu, Janice; Parliament, Matthew; Purdy, James A.; Valicenti, Richard K.; Cox, James D.
2012-07-01
Purpose: Report of clinical cancer control outcomes on Radiation Therapy Oncology Group (RTOG) 9406, a three-dimensional conformal radiation therapy (3D-CRT) dose escalation trial for localized adenocarcinoma of the prostate. Methods and Materials: RTOG 9406 is a Phase I/II multi-institutional dose escalation study of 3D-CRT for men with localized prostate cancer. Patients were registered on five sequential dose levels: 68.4 Gy, 73.8 Gy, 79.2 Gy, 74 Gy, and 78 Gy with 1.8 Gy/day (levels I-III) or 2.0 Gy/day (levels IV and V). Neoadjuvant hormone therapy (NHT) from 2 to 6 months was allowed. Protocol-specific, American Society for Therapeutic Radiation Oncology (ASTRO), and Phoenix biochemical failure definitions are reported. Results: Thirty-four institutions enrolled 1,084 patients and 1,051 patients are analyzable. Median follow-up for levels I, II, III, IV, and V was 11.7, 10.4, 11.8, 10.4, and 9.2 years, respectively. Thirty-six percent of patients received NHT. The 5-year overall survival was 90%, 87%, 88%, 89%, and 88% for dose levels I-V, respectively. The 5-year clinical disease-free survival (excluding protocol prostate-specific antigen definition) for levels I-V is 84%, 78%, 81%, 82%, and 82%, respectively. By ASTRO definition, the 5-year disease-free survivals were 57%, 59%, 52%, 64% and 75% (low risk); 46%, 52%, 54%, 56%, and 63% (intermediate risk); and 50%, 34%, 46%, 34%, and 61% (high risk) for levels I-V, respectively. By the Phoenix definition, the 5-year disease-free survivals were 68%, 73%, 67%, 84%, and 80% (low risk); 70%, 62%, 70%, 74%, and 69% (intermediate risk); and 42%, 62%, 68%, 54%, and 67% (high risk) for levels I-V, respectively. Conclusion: Dose-escalated 3D-CRT yields favorable outcomes for localized prostate cancer. This multi-institutional experience allows comparison to other experiences with modern radiation therapy.
Dynamic implicit 3D adaptive mesh refinement for non-equilibrium radiation diffusion
B. Philip; Z. Wang; M.A. Berrill; M. Birke; M. Pernice
2014-04-01
The time dependent non-equilibrium radiation diffusion equations are important for solving the transport of energy through radiation in optically thick regimes and find applications in several fields including astrophysics and inertial confinement fusion. The associated initial boundary value problems that are encountered often exhibit a wide range of scales in space and time and are extremely challenging to solve. To efficiently and accurately simulate these systems we describe our research on combining techniques that will also find use more broadly for long term time integration of nonlinear multi-physics systems: implicit time integration for efficient long term time integration of stiff multi-physics systems, local control theory based step size control to minimize the required global number of time steps while controlling accuracy, dynamic 3D adaptive mesh refinement (AMR) to minimize memory and computational costs, Jacobian Free Newton–Krylov methods on AMR grids for efficient nonlinear solution, and optimal multilevel preconditioner components that provide level independent solver convergence.
FURN3D: A computer code for radiative heat transfer in pulverized coal furnaces
Ahluwalia, R.K.; Im, K.H.
1992-08-01
A computer code FURN3D has been developed for assessing the impact of burning different coals on heat absorption pattern in pulverized coal furnaces. The code is unique in its ability to conduct detailed spectral calculations of radiation transport in furnaces fully accounting for the size distributions of char, soot and ash particles, ash content, and ash composition. The code uses a hybrid technique of solving the three-dimensional radiation transport equation for absorbing, emitting and anisotropically scattering media. The technique achieves an optimal mix of computational speed and accuracy by combining the discrete ordinate method (S[sub 4]), modified differential approximation (MDA) and P, approximation in different range of optical thicknesses. The code uses spectroscopic data for estimating the absorption coefficients of participating gases C0[sub 2], H[sub 2]0 and CO. It invokes Mie theory for determining the extinction and scattering coefficients of combustion particulates. The optical constants of char, soot and ash are obtained from dispersion relations derived from reflectivity, transmissivity and extinction measurements. A control-volume formulation is adopted for determining the temperature field inside the furnace. A simple char burnout model is employed for estimating heat release and evolution of particle size distribution. The code is written in Fortran 77, has modular form, and is machine-independent. The computer memory required by the code depends upon the number of grid points specified and whether the transport calculations are performed on spectral or gray basis.
FURN3D: A computer code for radiative heat transfer in pulverized coal furnaces
Ahluwalia, R.K.; Im, K.H.
1992-08-01
A computer code FURN3D has been developed for assessing the impact of burning different coals on heat absorption pattern in pulverized coal furnaces. The code is unique in its ability to conduct detailed spectral calculations of radiation transport in furnaces fully accounting for the size distributions of char, soot and ash particles, ash content, and ash composition. The code uses a hybrid technique of solving the three-dimensional radiation transport equation for absorbing, emitting and anisotropically scattering media. The technique achieves an optimal mix of computational speed and accuracy by combining the discrete ordinate method (S{sub 4}), modified differential approximation (MDA) and P, approximation in different range of optical thicknesses. The code uses spectroscopic data for estimating the absorption coefficients of participating gases C0{sub 2}, H{sub 2}0 and CO. It invokes Mie theory for determining the extinction and scattering coefficients of combustion particulates. The optical constants of char, soot and ash are obtained from dispersion relations derived from reflectivity, transmissivity and extinction measurements. A control-volume formulation is adopted for determining the temperature field inside the furnace. A simple char burnout model is employed for estimating heat release and evolution of particle size distribution. The code is written in Fortran 77, has modular form, and is machine-independent. The computer memory required by the code depends upon the number of grid points specified and whether the transport calculations are performed on spectral or gray basis.
High-resolution 3D dust radiative transfer in galaxies with DART-Ray
NASA Astrophysics Data System (ADS)
Natale, Giovanni; Popescu, Cristina C.; Tuffs, Richard. J.; Debattista, Victor P.; Grootes, Meiert W.
2015-02-01
DART-Ray is a 3D ray-tracing dust radiative transfer (RT) code that can be used to derive stellar and dust emission maps of galaxy models and simulations with arbitrary geometries. In addition to the previously published RT algorithm, we have now included in DART-Ray the possibility of calculating the stocastically heated dust emission from each volume element within a galaxy. To show the capabilities of the code, we performed a high-resolution (26 pc) RT calculation for a galaxy N-body+SPH simulation. The simulated galaxy we considered is characterized by a nuclear disc and a flocculent spiral structure. We analysed the derived galaxy maps for the global and local effects of dust on the galaxy attenuation as well as the contribution of scattered radiation to the predicted observed emission. In addition, by performing an additional RT calculation including only the stellar volume emissivity due to young stellar populations (SPs), we derived the contribution to the total dust emission powered by young and old SPs. Full details of this work will be presented in a forthcoming publication.
Dynamic implicit 3D adaptive mesh refinement for non-equilibrium radiation diffusion
NASA Astrophysics Data System (ADS)
Philip, B.; Wang, Z.; Berrill, M. A.; Birke, M.; Pernice, M.
2014-04-01
The time dependent non-equilibrium radiation diffusion equations are important for solving the transport of energy through radiation in optically thick regimes and find applications in several fields including astrophysics and inertial confinement fusion. The associated initial boundary value problems that are encountered often exhibit a wide range of scales in space and time and are extremely challenging to solve. To efficiently and accurately simulate these systems we describe our research on combining techniques that will also find use more broadly for long term time integration of nonlinear multi-physics systems: implicit time integration for efficient long term time integration of stiff multi-physics systems, local control theory based step size control to minimize the required global number of time steps while controlling accuracy, dynamic 3D adaptive mesh refinement (AMR) to minimize memory and computational costs, Jacobian Free Newton-Krylov methods on AMR grids for efficient nonlinear solution, and optimal multilevel preconditioner components that provide level independent solver convergence.
Dosimetry in brain tumor phantom at 15 MV 3D conformal radiation therapy
2013-01-01
Glioblastoma multiforme (GBM) is the most common, aggressive, highly malignant and infiltrative of all brain tumors with low rate of control. The main goal of this work was to evaluate the spatial dose distribution into a GBM simulator inside a head phantom exposed to a 15 MV 3D conformal radiation therapy in order to validate internal doses. A head and neck phantom developed by the Ionizing Radiation Research Group (NRI) was used on the experiments. Such phantom holds the following synthetic structures: brain and spinal cord, skull, cervical and thoracic vertebrae, jaw, hyoid bone, laryngeal cartilages, head and neck muscles and skin. Computer tomography (CT) of the simulator was taken, capturing a set of contrasted references. Therapy Radiation planning (TPS) was performed based on those CT images, satisfying a 200 cGy prescribed dose split in three irradiation fields. The TPS assumed 97% of prescribed dose cover the prescribed treatment volume (PTV). Radiochromic films in a solid water phantom provided dose response as a function of optical density. Spatial dosimetric distribution was generated by radiochromic film samples at coronal, sagittal-anterior and sagittal-posterior positions, inserted into tumor simulator and brain. The spatial dose profiles held 70 to 120% of the prescribed dose. In spite of the stratified profile, as opposed to the smooth dose profile from TPS, the tumor internal doses were within a 5% deviation from 214.4 cGy evaluated by TPS. 83.2% of the points with a gamma value of less than 1 (3%/3mm) for TPS and experimental values, respectively. At the tumor, measured at coronal section, a few dark spots in the film caused the appearance of outlier points in 13-15% of dose deviation percentage. And, as final conclusion, such dosimeter choice and the physical anthropomorphic and anthropometric phantom provided an efficient method for validating radiotherapy protocols. PMID:23829593
Study of a non-diffusing radiochromic gel dosimeter for 3D radiation dose imaging
NASA Astrophysics Data System (ADS)
Marsden, Craig Michael
2000-12-01
This thesis investigates the potential of a new radiation gel dosimeter, based on nitro-blue tetrazolium (NBTZ) suspended in a gelatin mold. Unlike all Fricke based gel dosimeters this dosimeter does not suffer from diffusive loss of image stability. Images are obtained by an optical tomography method. Nitro blue tetrazolium is a common biological indicator that when irradiated in an aqueous medium undergoes reduction to a highly colored formazan, which has an absorbance maximum at 525nm. Tetrazolium is water soluble while the formazan product is insoluble. The formazan product sticks to the gelatin matrix and the dose image is maintained for three months. Methods to maximize the sensitivity of the system were evaluated. It was found that a chemical detergent, Triton X-100, in combination with sodium formate, increased the dosimeter sensitivity significantly. An initial G-value of formazan production for a dosimeter composed of 1mM NBTZ, gelatin, and water was on the order of 0.2. The addition of Triton and formate produced a G-value in excess of 5.0. The effects of NBTZ, triton, formate, and gel concentration were all investigated. All the gels provided linear dose vs. absorbance plots for doses from 0 to >100 Gy. It was determined that gel concentration had minimal if any effect on sensitivity. Sensitivity increased slightly with increasing NBTZ concentration. Triton and formate individually and together provided moderate to large increases in dosimeter sensitivity. The dosimeter described in this work can provide stable 3D radiation dose images for all modalities of radiation therapy equipment. Methods to increase sensitivity are developed and discussed.
An object-oriented implementation of a parallel Monte Carlo code for radiation transport
NASA Astrophysics Data System (ADS)
Santos, Pedro Duarte; Lani, Andrea
2016-05-01
This paper describes the main features of a state-of-the-art Monte Carlo solver for radiation transport which has been implemented within COOLFluiD, a world-class open source object-oriented platform for scientific simulations. The Monte Carlo code makes use of efficient ray tracing algorithms (for 2D, axisymmetric and 3D arbitrary unstructured meshes) which are described in detail. The solver accuracy is first verified in testcases for which analytical solutions are available, then validated for a space re-entry flight experiment (i.e. FIRE II) for which comparisons against both experiments and reference numerical solutions are provided. Through the flexible design of the physical models, ray tracing and parallelization strategy (fully reusing the mesh decomposition inherited by the fluid simulator), the implementation was made efficient and reusable.
Design and production of 3D printed bolus for electron radiation therapy.
Su, Shiqin; Moran, Kathryn; Robar, James L
2014-07-08
This is a proof-of-concept study demonstrating the capacity for modulated electron radiation therapy (MERT) dose distributions using 3D printed bolus. Previous reports have involved bolus design using an electron pencil beam model and fabrication using a milling machine. In this study, an in-house algorithm is presented that optimizes the dose distribution with regard to dose coverage, conformity, and homogeneity within the planning target volume (PTV). The algorithm takes advantage of a commercial electron Monte Carlo dose calculation and uses the calculated result as input. Distances along ray lines from the distal side of 90% isodose line to distal surface of the PTV are used to estimate the bolus thickness. Inhomogeneities within the calculation volume are accounted for using the coefficient of equivalent thickness method. Several regional modulation operators are applied to improve the dose coverage and uniformity. The process is iterated (usually twice) until an acceptable MERT plan is realized, and the final bolus is printed using solid polylactic acid. The method is evaluated with regular geometric phantoms, anthropomorphic phantoms, and a clinical rhabdomyosarcoma pediatric case. In all cases the dose conformity are improved compared to that with uniform bolus. For geometric phantoms with air or bone inhomogeneities, the dose homogeneity is markedly improved. The actual printed boluses conform well to the surface of complex anthropomorphic phantoms. The correspondence of the dose distribution between the calculated synthetic bolus and the actual manufactured bolus is shown. For the rhabdomyosarcoma patient, the MERT plan yields a reduction of mean dose by 38.2% in left kidney relative to uniform bolus. MERT using 3D printed bolus appears to be a practical, low-cost approach to generating optimized bolus for electron therapy. The method is effective in improving conformity of the prescription isodose surface and in sparing immediately adjacent normal
Zhang, Pengpeng; Hunt, Margie; Pham, Hai; Tang, Grace; Mageras, Gig
2016-01-01
Purpose To implement novel imaging sequences integrated into intensity modulated radiation therapy (IMRT) and determine 3D positions for intrafractional patient motion monitoring and management. Method In one method, we converted a static gantry IMRT beam into a series of arcs in which dose index and multileaf collimator positions for all control points were unchanged, but gantry angles were modified to oscillate ±3° around the original angle. Kilovoltage (kV) projections were acquired continuously throughout delivery and reconstructed to provide a series of 6° arc digital tomosynthesis (DTS) images which served to evaluate the in-plane positions of embedded-fiducials/vertebral-body. To obtain out-of-plane positions via triangulation, a 20° gantry rotation with beam hold-off was inserted during delivery to produce a pair of 6° DTS images separated by 14°. In a second method, the gantry remained stationary, but both kV source and detector moved over a 15° longitudinal arc using pitch and translational adjustment of the robotic arms. Evaluation of localization accuracy in an anthropomorphic Rando phantom during simulated intrafractional motion used programmed couch translations from customized scripts. Purpose-built software was used to reconstruct DTS images, register them to reference template images and calculate 3D fiducial positions. Result No significant dose difference (<0.5%) was found between the original and converted IMRT beams. For a typical hypofractionated spine treatment, 200 single DTS (6° arc) and 10 paired DTS (20° arc) images were acquired for each IMRT beam, providing in-plane and out-of-plane monitoring every 1.6 and 34.5 seconds, respectively. Mean ± standard deviation error in predicted position was −0.3±0.2 mm, −0.1±0.1 mm in-plane, and 0.2±0.4 mm out-of-plane with rotational gantry, 0.8±0.1 mm, −0.7±0.3 mm in-plane and 1.1±0.1 mm out-of-plane with translational source/detector. Conclusion Acquiring 3D fiducial positions
Zhang, Pengpeng; Hunt, Margie; Pham, Hai; Tang, Grace; Mageras, Gig
2015-09-07
To implement novel imaging sequences integrated into intensity modulated radiation therapy (IMRT) and determine 3D positions for intrafractional patient motion monitoring and management.In one method, we converted a static gantry IMRT beam into a series of arcs in which dose index and multileaf collimator positions for all control points were unchanged, but gantry angles were modified to oscillate ± 3° around the original angle. Kilovoltage (kV) projections were acquired continuously throughout delivery and reconstructed to provide a series of 6° arc digital tomosynthesis (DTS) images which served to evaluate the in-plane positions of embedded-fiducials/vertebral-body. To obtain out-of-plane positions via triangulation, a 20° gantry rotation with beam hold-off was inserted during delivery to produce a pair of 6° DTS images separated by 14°. In a second method, the gantry remained stationary, but both kV source and detector moved over a 15° longitudinal arc using pitch and translational adjustment of the robotic arms. Evaluation of localization accuracy in an anthropomorphic Rando phantom during simulated intrafractional motion used programmed couch translations from customized scripts. Purpose-built software was used to reconstruct DTS images, register them to reference template images and calculate 3D fiducial positions.No significant dose difference (<0.5%) was found between the original and converted IMRT beams. For a typical hypofractionated spine treatment, 200 single DTS (6° arc) and 10 paired DTS (20° arc) images were acquired for each IMRT beam, providing in-plane and out-of-plane monitoring every 1.6 and 34.5 s, respectively. Mean ± standard deviation error in predicted position was -0.3 ± 0.2 mm, -0.1 ± 0.1 mm in-plane, and 0.2 ± 0.4 mm out-of-plane with rotational gantry, 0.8 ± 0.1 mm, -0.7 ± 0.3 mm in-plane and 1.1 ± 0.1 mm out-of-plane with translational source/detector.Acquiring 3D fiducial positions from kV-DTS during fixed gantry
Search for secular changes in the 3D profile of the synchrotron radiation around Jupiter
NASA Astrophysics Data System (ADS)
Dunn, David E.; de Pater, Imke; Sault, R. J.
2003-09-01
We present a summary of Jupiter data taken over an eighteen year span (1981-1998) by the Very Large Array at ˜21.0 cm. At this wavelength the emission is dominated by synchrotron radiation, which is roughly proportional to the product of the electron number density and magnetic field strength ( NeB). At each epoch 8-12 hours of data were taken, which allowed us to examine Jupiter during an entire rotation period. We mapped the longitudinal structure of the synchrotron radiation by using a 3D reconstruction technique developed by Sault et al. [Astron. Astrophys. 324 (1997) 1190] which enabled us to produce plots of the latitude, radial distance, and peak intensity vs. jovian longitude (System III). The results show the shape of the synchrotron radiation has remained stable (except, of course, during the period of comet Shoemaker-Levy 9 impacts). Specifically, the latitudinal structure has remained nearly constant. Furthermore, the general dependence of the radial intensity profile has remained the same throughout the years, though radial distance has slightly, though significantly, changed. This constancy implies that the spatial structure of both the particle distribution and magnetic field have varied little over the eighteen year span. The primary changes in the synchrotron radiation have been seen in the intensity of emission as a function of time. There are certain epochs (e.g., 1987) which show more emissivity than others (e.g., 1981, 1995) at all longitudes. When each epoch is longitudinally averaged, there may be an anti-correlation between the radial distance and corresponding peak intensities of the synchrotron radiation, as one might expect if radial diffusion is important. We examine these trends by comparing the data to plots of the total intensity at 13 cm (by Klein et al., in: Rucker, H.O., et al., Planetary Radio Emissions V. Austrian Acad. Sci. Press, Vienna, p. 221). Overall, variations in our 21-cm data are similar to those measured at 13 cm, but
A study of the earth radiation budget using a 3D Monte-Carlo radiative transer code
NASA Astrophysics Data System (ADS)
Okata, M.; Nakajima, T.; Sato, Y.; Inoue, T.; Donovan, D. P.
2013-12-01
The purpose of this study is to evaluate the earth's radiation budget when data are available from satellite-borne active sensors, i.e. cloud profiling radar (CPR) and lidar, and a multi-spectral imager (MSI) in the project of the Earth Explorer/EarthCARE mission. For this purpose, we first developed forward and backward 3D Monte Carlo radiative transfer codes that can treat a broadband solar flux calculation including thermal infrared emission calculation by k-distribution parameters of Sekiguchi and Nakajima (2008). In order to construct the 3D cloud field, we tried the following three methods: 1) stochastic cloud generated by randomized optical thickness each layer distribution and regularly-distributed tilted clouds, 2) numerical simulations by a non-hydrostatic model with bin cloud microphysics model and 3) Minimum cloud Information Deviation Profiling Method (MIDPM) as explained later. As for the method-2 (numerical modeling method), we employed numerical simulation results of Californian summer stratus clouds simulated by a non-hydrostatic atmospheric model with a bin-type cloud microphysics model based on the JMA NHM model (Iguchi et al., 2008; Sato et al., 2009, 2012) with horizontal (vertical) grid spacing of 100m (20m) and 300m (20m) in a domain of 30km (x), 30km (y), 1.5km (z) and with a horizontally periodic lateral boundary condition. Two different cell systems were simulated depending on the cloud condensation nuclei (CCN) concentration. In the case of horizontal resolution of 100m, regionally averaged cloud optical thickness,
NASA Astrophysics Data System (ADS)
Fauchez, Thomas; Davis, Anthony B.; Cornet, Céline; Szczap, Fredéric; Platnick, Steven; Dubuisson, Philippe; Thieuleux, François
2017-01-01
We investigate the impact of cirrus cloud heterogeneity on the direct emission by cloud or surface and on the scattering by ice particles in the thermal infrared (TIR). Realistic 3-D cirri are modeled with the 3DCLOUD code, and top-of-atmosphere radiances are simulated by the 3-D Monte Carlo radiative transfer (RT) algorithm 3DMCPOL for two (8.65 μm and 12.05 μm) channels of the Imaging Infrared Radiometer on CALIPSO. At nadir, comparisons of 1-D and 3-D RT show that 3-D radiances are larger than their 1-D counterparts for direct emission but smaller for scattered radiation. For our cirrus cases, 99% of the 3-D total radiance is computed by the third scattering order, which corresponds to 90% of the total computational effort, but larger optical thicknesses need more scattering orders. To radically accelerate the 3-D RT computations (using only few percent of 3-D RT time with a Monte Carlo code), even in the presence of large optical depths, we develop a hybrid model based on exact 3-D direct emission, the first scattering order from 1-D in each homogenized column, and an empirical adjustment linearly dependent on the optical thickness to account for higher scattering orders. Good agreement is found between the hybrid model and the exact 3-D radiances for two very different cirrus models without changing the empirical parameters. We anticipate that a future deterministic implementation of the hybrid model will be fast enough to process multiangle thermal imagery in a practical tomographic reconstruction of 3-D cirrus fields.
NASA Technical Reports Server (NTRS)
Fauchez, Thomas; Davis, Anthony B.; Cornet, Celine; Szczap, Frederic; Platnick, Steven; Dubuisson, Philippe; Thieuleux, Francois
2017-01-01
We investigate the impact of cirrus cloud heterogeneity on the direct emission by cloud or surface and on the scattering by ice particles in the thermal infrared (TIR). Realistic 3-D cirri are modeled with the 3DCLOUD code, and top-of-atmosphere radiances are simulated by the 3-D Monte Carlo radiative transfer (RT) algorithm 3DMCPOL for two (8.65 micrometers and 12.05 micrometers) channels of the Imaging Infrared Radiometer on CALIPSO. At nadir, comparisons of 1-D and 3-D RT show that 3-D radiances are larger than their 1-D counterparts for direct emission but smaller for scattered radiation. For our cirrus cases, 99% of the 3-D total radiance is computed by the third scattering order, which corresponds to 90% of the total computational effort, but larger optical thicknesses need more scattering orders. To radically accelerate the 3-D RT computations (using only few percent of 3-D RT time with a Monte Carlo code), even in the presence of large optical depths, we develop a hybrid model based on exact 3-D direct emission, the first scattering order from 1-D in each homogenized column, and an empirical adjustment linearly dependent on the optical thickness to account for higher scattering orders. Good agreement is found between the hybrid model and the exact 3-D radiances for two very different cirrus models without changing the empirical parameters. We anticipate that a future deterministic implementation of the hybrid model will be fast enough to process multiangle thermal imagery in a practical tomographic reconstruction of 3-D cirrus fields.
Unstructured mesh methods for CFD
NASA Technical Reports Server (NTRS)
Peraire, J.; Morgan, K.; Peiro, J.
1990-01-01
Mesh generation methods for Computational Fluid Dynamics (CFD) are outlined. Geometric modeling is discussed. An advancing front method is described. Flow past a two engine Falcon aeroplane is studied. An algorithm and associated data structure called the alternating digital tree, which efficiently solves the geometric searching problem is described. The computation of an initial approximation to the steady state solution of a given poblem is described. Mesh generation for transient flows is described.
Yamashiro, Tsuneo; Miyara, Tetsuhiro; Honda, Osamu; Kamiya, Hisashi; Murata, Kiyoshi; Ohno, Yoshiharu; Tomiyama, Noriyuki; Moriya, Hiroshi; Koyama, Mitsuhiro; Noma, Satoshi; Kamiya, Ayano; Tanaka, Yuko; Murayama, Sadayuki
2014-01-01
Objective To assess the advantages of Adaptive Iterative Dose Reduction using Three Dimensional Processing (AIDR3D) for image quality improvement and dose reduction for chest computed tomography (CT). Methods Institutional Review Boards approved this study and informed consent was obtained. Eighty-eight subjects underwent chest CT at five institutions using identical scanners and protocols. During a single visit, each subject was scanned using different tube currents: 240, 120, and 60 mA. Scan data were converted to images using AIDR3D and a conventional reconstruction mode (without AIDR3D). Using a 5-point scale from 1 (non-diagnostic) to 5 (excellent), three blinded observers independently evaluated image quality for three lung zones, four patterns of lung disease (nodule/mass, emphysema, bronchiolitis, and diffuse lung disease), and three mediastinal measurements (small structure visibility, streak artifacts, and shoulder artifacts). Differences in these scores were assessed by Scheffe's test. Results At each tube current, scans using AIDR3D had higher scores than those without AIDR3D, which were significant for lung zones (p<0.0001) and all mediastinal measurements (p<0.01). For lung diseases, significant improvements with AIDR3D were frequently observed at 120 and 60 mA. Scans with AIDR3D at 120 mA had significantly higher scores than those without AIDR3D at 240 mA for lung zones and mediastinal streak artifacts (p<0.0001), and slightly higher or equal scores for all other measurements. Scans with AIDR3D at 60 mA were also judged superior or equivalent to those without AIDR3D at 120 mA. Conclusion For chest CT, AIDR3D provides better image quality and can reduce radiation exposure by 50%. PMID:25153797
Design and testing of indigenous cost effective three dimensional radiation field analyser (3D RFA).
Ganesh, K M; Pichandi, A; Nehru, R M; Ravikumar, M
2014-06-01
The aim of the study is to design and validate an indigenous three dimensional Radiation Field Analyser (3D RFA). The feed system made for X, Y and Z axis movements is of lead screw with deep ball bearing mechanism made up of stain less steel driven by stepper motors with accuracy less than 0.5 mm. The telescopic column lifting unit was designed using linear actuation technology for lifting the water phantom. The acrylic phantom with dimensions of 800 x 750 x 570 mm was made with thickness of 15 mm. The software was developed in visual basic programming language, classified into two types, viz. beam analyzer software and beam acquisition software. The premeasurement checks were performed as per TG 106 recommendations. The physical parameters of photon PDDs such as Dmax, D10, D20 and Quality Index (QI), and the electron PDDs such as R50, Rp, E0, Epo and X-ray contamination values can be obtained instantaneously by using the developed RFA system. Also the results for profile data such as field size, central axis deviation, penumbra, flatness and symmetry calculated according to various protocols can be obtained for both photon and electron beams. The result of PDDs for photon beams were compared with BJR25 supplement values and the profile data were compared with TG 40 recommendation. The results were in agreement with standard protocols.
NASA Astrophysics Data System (ADS)
Wang, Cuihuan; Kim, Leonard; Barnard, Nicola; Khan, Atif; Pierce, Mark C.
2016-02-01
Our long term goal is to develop a high-resolution imaging method for comprehensive assessment of tissue removed during lumpectomy procedures. By identifying regions of high-grade disease within the excised specimen, we aim to develop patient-specific post-operative radiation treatment regimens. We have assembled a benchtop spectral-domain optical coherence tomography (SD-OCT) system with 1320 nm center wavelength. Automated beam scanning enables "sub-volumes" spanning 5 mm x 5 mm x 2 mm (500 A-lines x 500 B-scans x 2 mm in depth) to be collected in under 15 seconds. A motorized sample positioning stage enables multiple sub-volumes to be acquired across an entire tissue specimen. Sub-volumes are rendered from individual B-scans in 3D Slicer software and en face (XY) images are extracted at specific depths. These images are then tiled together using MosaicJ software to produce a large area en face view (up to 40 mm x 25 mm). After OCT imaging, specimens were sectioned and stained with HE, allowing comparison between OCT image features and disease markers on histopathology. This manuscript describes the technical aspects of image acquisition and reconstruction, and reports initial qualitative comparison between large area en face OCT images and HE stained tissue sections. Future goals include developing image reconstruction algorithms for mapping an entire sample, and registering OCT image volumes with clinical CT and MRI images for post-operative treatment planning.
Low-mass gas envelopes around accreting cores embedded in radiative 3D discs
NASA Astrophysics Data System (ADS)
Lega, Elena; Lambrechts, Michiel
2016-10-01
Planets with a core mass larger than few Earth masses and a gaseous envelope not exceeding about 10% of the total mass budget are common. Such planets are present in the Solar System (Uranus, Neptune) and are frequently observed around other stars.Our knowledge about the evolution of gas envelopes is mainly based on 1D models. However, such models cannot investigate the complex interaction between the forming envelope and the surrounding gas disc.In this work we perform 3D hydrodynamics simulations accounting for energy transfer and radiative cooling using the FARGOCA code (Lega et al., MNRAS 440, 2014). In addition to the usually considered heatingsources, namely viscous and compressional heating, we have modeled the energy deposited by the accretion of solids.We show that the thermal evolution of the envelope of a 5 Earth mass core is mainly dominated by compressional heating for accretion rates lower than 5 Earth masses per 105 years.Additionally, we demonstrate efficient gas circulation through the envelope. Under certain conditions, the competition between gas circulation and cooling of the envelope can efficiently delay the onset of runaway accretion. This could help in explaining the population of planets with low-mass gas envelope.
NASA Technical Reports Server (NTRS)
Wiscombe, Warren J.
2012-01-01
The main theme for our research is the understanding and closure of the surface spectral shortwave radiation problem in fully 3D cloud situations by combining the new ARM scanning radars, shortwave spectrometers, and microwave radiometers with the arsenal of radiative transfer tools developed by our group. In particular, we define first a large number of cloudy test cases spanning all 3D possibilities not just the customary uniform-overcast ones. Second, for each case, we define a "Best Estimate of Clouds That Affect Shortwave Radiation" using all relevant ARM instruments, notably the new scanning radars, and contribute this to the ARM Archive. Third, we test the ASR-signature radiative transfer model RRTMG_SW for those cases, focusing on the near-IR because of long-standing problems in this spectral region, and work with the developers to improve RRTMG_SW in order to increase its penetration into the modeling community.
2009-01-01
phase matrix were determined by letting the elements of the reduced phase matrix ( ˜ P ij = Pij /P11) be equal to those of the reduced Rayleigh...for the solution of 3-D Radiative Transfer Problems”, JQSRT. 45. 47-56, (1991) 3. A. Sánchez, T.F. Smith, and W. F. Krajewski “A three-dimensional...F. Krajewski , “A Multi-dimensional Discrete Ordinates Method for Polarized Radiative Transfer, Part I: Validation for Randomly Oriented
3D Radiation Nonideal Magnetohydrodynamical Simulations of the Inner Rim in Protoplanetary Disks
NASA Astrophysics Data System (ADS)
Flock, M.; Fromang, S.; Turner, N. J.; Benisty, M.
2017-02-01
Many planets orbit within 1 au of their stars, raising questions about their origins. Particularly puzzling are the planets found near the silicate sublimation front. We investigate conditions near the front in the protostellar disk around a young intermediate-mass star, using the first global 3D radiation nonideal MHD simulations in this context. We treat the starlight heating; the silicate grains’ sublimation and deposition at the local, time-varying temperature and density; temperature-dependent ohmic dissipation; and various initial magnetic fields. The results show magnetorotational turbulence around the sublimation front at 0.5 au. The disk interior to 0.8 au is turbulent, with velocities exceeding 10% of the sound speed. Beyond 0.8 au is the dead zone, cooler than 1000 K and with turbulence orders of magnitude weaker. A local pressure maximum just inside the dead zone concentrates solid particles, favoring their growth. Over many orbits, a vortex develops at the dead zone’s inner edge, increasing the disk’s thickness locally by around 10%. We synthetically observe the results using Monte Carlo transfer calculations, finding that the sublimation front is near-infrared bright. The models with net vertical magnetic fields develop extended, magnetically supported atmospheres that reprocess extra starlight, raising the near-infrared flux 20%. The vortex throws a nonaxisymmetric shadow on the outer disk. At wavelengths > 2 μ {{m}}, the flux varies several percent on monthly timescales. The variations are more regular when the vortex is present. The vortex is directly visible as an arc at ultraviolet through near-infrared wavelengths, given sub-au spatial resolution.
NASA Astrophysics Data System (ADS)
Schäfer, Sophia A. K.; Hogan, Robin J.; Klinger, Carolin; Chiu, J. Christine; Mayer, Bernhard
2016-07-01
Current weather and climate models neglect 3-D radiative transfer through cloud sides, which can change the cloud radiative effect (CRE) significantly. This two-part paper describes the development of the SPeedy Algorithm for Radiative TrAnsfer through CloUd Sides (SPARTACUS) to capture these effects efficiently in a two-stream radiation scheme for use in global models. The present paper concerns the longwave spectral region, where not much work has been done previously, although the limited previous work has suggested that radiative transfer through cloud sides increases the longwave surface CRE of shallow cumulus by around 30%. To assist the development of a longwave capability for SPARTACUS, we use a reference case of an isolated, isothermal, optically thick, cubic cloud in vacuum, for which 3-D effects increase CRE by exactly 200%. It is shown that for any cloud shape, the 3-D effect can be represented in SPARTACUS provided that correct account is made for (1) the effective zenith angle of diffuse radiation emitted from a cloud, (2) the spatial distribution of fluxes in the cloud, (3) cloud clustering that enhances the interception of emitted radiation by neighboring clouds, and (4) radiative smoothing leading to the effective cloud edge length being less than the measured value. We find empirically that the circumference of an ellipse fitted to a horizontal cross section through a cumulus cloud provides a good estimate of the radiatively effective cloud edge length, which provides some guidance to how cloud observations could be analyzed to extract their most important properties for radiation.
2007-09-30
An efficient method for the solution of 3-D Radiative Transfer Problems”, JQSRT. 45. 47-56, (1991) 3. A. Sánchez, T.F. Smith, and W. F. Krajewski ...Haferman, T. F. Smith, and W. F. Krajewski , “A Multi-dimensional Discrete Ordinates Method for Polarized Radiative Transfer, Part I: Validation for...Operator Theory of Radiative Transfer. II. Scattering from Maritime Haze,” Appl. Opt. l2, 1071-1084 (1973). PUBLICATIONS 1. P . Zhai, G. W. Kattawar
Chiu, Jui-Yuan
2015-09-14
ARM set out 20 years ago to “close” the radiation problem, that is, to improve radiation models to the point where they could routinely predict the observed spectral radiation fluxes knowing the optical properties of the surface and of gases, clouds and aerosols in the atmosphere. Only then could such radiation models form a proper springboard for global climate model (GCM) parameterizations of spectral radiation. Sustained efforts have more or less achieved that goal with regard to longwave radiation; ASR models now routinely predict ARM spectral longwave radiances to 1–2%. Similar efforts in the shortwave have achieved far less; the successes are mainly for carefully selected 1D stratiform cloud cases. Such cases amount, even with the most optimistic interpretation, to no more than 30% of all cases at SGP. The problem has not been lack of effort but lack of appropriate instruments.The new ARM stimulus-funded instruments, with their new capabilities, will dramatically improve this situation and once again make progress possible on the shortwave problem. The new shortwave spectrometers will provide a reliable, calibrated record including the near infrared – and for other climatic regimes than SGP. The new scanning radars will provide the 3D cloud view, making it possible to tackle fully 3D situations. Thus, our main theme for the project is the understanding and closure of the surface spectral shortwave radiation problem in fully 3D cloud situations by combining the new ARM scanning radars and shortwave spectrometers with the arsenal of radiative transfer tools.
3D finite element model for writing long-period fiber gratings by CO2 laser radiation.
Coelho, João M P; Nespereira, Marta; Abreu, Manuel; Rebordão, José
2013-08-12
In the last years, mid-infrared radiation emitted by CO2 lasers has become increasing popular as a tool in the development of long-period fiber gratings. However, although the development and characterization of the resulting sensing devices have progressed quickly, further research is still necessary to consolidate functional models, especially regarding the interaction between laser radiation and the fiber's material. In this paper, a 3D finite element model is presented to simulate the interaction between laser radiation and an optical fiber and to determine the resulting refractive index change. Dependence with temperature of the main parameters of the optical fiber materials (with special focus on the absorption of incident laser radiation) is considered, as well as convection and radiation losses. Thermal and residual stress analyses are made for a standard single mode fiber, and experimental results are presented.
3D Finite Element Model for Writing Long-Period Fiber Gratings by CO2 Laser Radiation
Coelho, João M. P.; Nespereira, Marta; Abreu, Manuel; Rebordão, José
2013-01-01
In the last years, mid-infrared radiation emitted by CO2 lasers has become increasing popular as a tool in the development of long-period fiber gratings. However, although the development and characterization of the resulting sensing devices have progressed quickly, further research is still necessary to consolidate functional models, especially regarding the interaction between laser radiation and the fiber's material. In this paper, a 3D finite element model is presented to simulate the interaction between laser radiation and an optical fiber and to determine the resulting refractive index change. Dependence with temperature of the main parameters of the optical fiber materials (with special focus on the absorption of incident laser radiation) is considered, as well as convection and radiation losses. Thermal and residual stress analyses are made for a standard single mode fiber, and experimental results are presented. PMID:23941908
Filippi, Andrea Riccardo; Ciammella, Patrizia; Piva, Cristina; Ragona, Riccardo; Botto, Barbara; Gavarotti, Paolo; Merli, Francesco; Vitolo, Umberto; Iotti, Cinzia; Ricardi, Umberto
2014-06-01
Purpose: Image-guided intensity modulated radiation therapy (IG-IMRT) allows for margin reduction and highly conformal dose distribution, with consistent advantages in sparing of normal tissues. The purpose of this retrospective study was to compare involved-site IG-IMRT with involved-site 3D conformal RT (3D-CRT) in the treatment of early stage Hodgkin lymphoma (HL) involving the mediastinum, with efficacy and toxicity as primary clinical endpoints. Methods and Materials: We analyzed 90 stage IIA HL patients treated with either involved-site 3D-CRT or IG-IMRT between 2005 and 2012 in 2 different institutions. Inclusion criteria were favorable or unfavorable disease (according to European Organization for Research and Treatment of Cancer criteria), complete response after 3 to 4 cycles of an adriamycin- bleomycin-vinblastine-dacarbazine (ABVD) regimen plus 30 Gy as total radiation dose. Exclusion criteria were chemotherapy other than ABVD, partial response after ABVD, total radiation dose other than 30 Gy. Clinical endpoints were relapse-free survival (RFS) and acute toxicity. Results: Forty-nine patients were treated with 3D-CRT (54.4%) and 41 with IG-IMRT (45.6%). Median follow-up time was 54.2 months for 3D-CRT and 24.1 months for IG-IMRT. No differences in RFS were observed between the 2 groups, with 1 relapse each. Three-year RFS was 98.7% for 3D-CRT and 100% for IG-IMRT. Grade 2 toxicity events, mainly mucositis, were recorded in 32.7% of 3D-CRT patients (16 of 49) and in 9.8% of IG-IMRT patients (4 of 41). IG-IMRT was significantly associated with a lower incidence of grade 2 acute toxicity (P=.043). Conclusions: RFS rates at 3 years were extremely high in both groups, albeit the median follow-up time is different. Acute tolerance profiles were better for IG-IMRT than for 3D-CRT. Our preliminary results support the clinical safety and efficacy of advanced RT planning and delivery techniques in patients affected with early stage HL, achieving complete
SU-E-T-03: 3D GPU-Accelerated Secondary Checks of Radiation Therapy Treatment Plans
Clemente, F; Perez, C
2014-06-01
Purpose: Redundant treatment verifications in conformal and intensity-modulated radiation therapy techniques are traditionally performed with single point calculations. New solutions can replace these checks with 3D treatment plan verifications. This work describes a software tool (Mobius3D, Mobius Medical Systems) that uses a GPU-accelerated collapsed cone algorithm to perform 3D independent verifications of TPS calculations. Methods: Mobius3D comes with reference beam models for common linear accelerators. The system uses an independently developed collapsed cone algorithm updated with recent enhancements. 144 isotropically-spaced cones are used for each voxel for calculations. These complex calculations can be sped up by using GPUs. Mobius3D calculate dose using DICOM information coming from TPS (CT, RT Struct, RT Plan RT Dose). DVH-metrics and 3D gamma tests can be used to compare both TPS and secondary calculations. 170 patients treated with all common techniques as 3DCFRT (including wedged), static and dynamic IMRT and VMAT have been successfully verified with this solution. Results: Calculation times are between 3–5 minutes for 3DCFRT treatments and 15–20 for most complex dMLC and VMAT plans. For all PTVs mean dose and 90% coverage differences are (1.12±0.97)% and (0.68±1.19)%, respectively. Mean dose discrepancies for all OARs is (0.64±1.00)%. 3D gamma (global, 3%/3 mm) analysis shows a mean passing rate of (97.8 ± 3.0)% for PTVs and (99.0±3.0)% for OARs. 3D gamma pasing rate for all voxels in CT has a mean value of (98.5±1.6)%. Conclusion: Mobius3D is a powerful tool to verify all modalities of radiation therapy treatments. Dose discrepancies calculated by this system are in good agreement with TPS. The use of reference beam data results in time savings and can be used to avoid the propagation of errors in original beam data into our QA system. GPU calculations permit enhanced collapsed cone calculations with reasonable calculation times.
Tran-Gia, Johannes; Schlögl, Susanne; Lassmann, Michael
2016-12-01
Currently, the validation of multimodal quantitative imaging and absorbed dose measurements is impeded by the lack of suitable, commercially available anthropomorphic phantoms of variable sizes and shapes. To demonstrate the potential of 3-dimensional (3D) printing techniques for quantitative SPECT/CT imaging, a set of kidney dosimetry phantoms and their spherical counterparts was designed and manufactured with a fused-deposition-modeling 3D printer. Nuclide-dependent SPECT/CT calibration factors were determined to assess the accuracy of quantitative imaging for internal renal dosimetry.
NASA Astrophysics Data System (ADS)
Hogan, Robin J.; Schäfer, Sophia A. K.; Klinger, Carolin; Chiu, J. Christine; Mayer, Bernhard
2016-07-01
Estimating the impact of radiation transport through cloud sides on the global energy budget is hampered by the lack of a fast radiation scheme suitable for use in global atmospheric models that can represent these effects in both the shortwave and longwave. This two-part paper describes the development of such a scheme, which we refer to as the Speedy Algorithm for Radiative Transfer through Cloud Sides (SPARTACUS). The principle of the method is to add extra terms to the two-stream equations to represent lateral transport between clear and cloudy regions, which vary in proportion to the length of cloud edge as a function of height. The present paper describes a robust and accurate method for solving the coupled system of equations in both the shortwave and longwave in terms of matrix exponentials. This solver has been coupled to a correlated-k model for gas absorption. We then confirm the accuracy of SPARTACUS by performing broadband comparisons with fully 3-D radiation calculations by the Monte Carlo model "MYSTIC" for a cumulus cloud field, examining particularly the percentage change in cloud radiative effect (CRE) when 3-D effects are introduced. In the shortwave, SPARTACUS correctly captures this change to CRE, which varies with solar zenith angle between -25% and +120%. In the longwave, SPARTACUS captures well the increase in radiative cooling of the cloud, although it is only able to correctly simulate the 30% increase in surface CRE (around 4 W m-2) if an approximate correction is made for cloud clustering.
NASA Technical Reports Server (NTRS)
Wen, Guoyong; Marshak, Alexander; Cahalan, Robert F.; Remer, Lorraine A.; Kleidman, Richard G.
2007-01-01
3D aerosol-cloud interaction is examined by analyzing two images containing cumulus clouds in biomass burning regions in Brazil. The research consists of two parts. The first part focuses on identifying 3D clo ud impacts on the reflectance of pixel selected for the MODIS aerosol retrieval based purely on observations. The second part of the resea rch combines the observations with radiative transfer computations to identify key parameters in 3D aerosol-cloud interaction. We found that 3D cloud-induced enhancement depends on optical properties of nearb y clouds as well as wavelength. The enhancement is too large to be ig nored. Associated biased error in 1D aerosol optical thickness retrie val ranges from 50% to 140% depending on wavelength and optical prope rties of nearby clouds as well as aerosol optical thickness. We caution the community to be prudent when applying 1D approximations in comp uting solar radiation in dear regions adjacent to clouds or when usin g traditional retrieved aerosol optical thickness in aerosol indirect effect research.
Zhang, Meng-Qi; Zhou, Luo; Deng, Qian-Fang; Xie, Yuan-Yuan; Xiao, Ti-Qiao; Cao, Yu-Ze; Zhang, Ji-Wen; Chen, Xu-Meng; Yin, Xian-Zhen; Xiao, Bo
2015-01-01
The angioarchitecture is a fundamental aspect of brain development and physiology. However, available imaging tools are unsuited for non-destructive cerebral mapping of the functionally important three-dimensional (3D) vascular microstructures. To address this issue, we developed an ultra-high resolution 3D digitalized angioarchitectural map for rat brain, based on synchrotron radiation phase contrast imaging (SR-PCI) with pixel size of 5.92 μm. This approach provides a systematic and detailed view of the cerebrovascular anatomy at the micrometer level without any need for contrast agents. From qualitative and quantitative perspectives, the present 3D data provide a considerable insight into the spatial vascular network for whole rodent brain, particularly for functionally important regions of interest, such as the hippocampus, pre-frontal cerebral cortex and the corpus striatum. We extended these results to synchrotron-based virtual micro-endoscopy, thus revealing the trajectory of targeted vessels in 3D. The SR-PCI method for systematic visualization of cerebral microvasculature holds considerable promise for wider application in life sciences, including 3D micro-imaging in experimental models of neurodevelopmental and vascular disorders. PMID:26443231
Amundson, Sally A.
2013-06-12
We have used the MatTek 3-dimensional human skin model to study the gene expression response of a 3D model to low and high dose low LET radiation, and to study the radiation bystander effect as a function of distance from the site of irradiation with either alpha particles or low LET protons. We have found response pathways that appear to be specific for low dose exposures, that could not have been predicted from high dose studies. We also report the time and distance dependent expression of a large number of genes in bystander tissue. the bystander response in 3D tissues showed many similarities to that described previously in 2D cultured cells, but also showed some differences.
3D Space Radiation Transport in a Shielded ICRU Tissue Sphere
NASA Technical Reports Server (NTRS)
Wilson, John W.; Slaba, Tony C.; Badavi, Francis F.; Reddell, Brandon D.; Bahadori, Amir A.
2014-01-01
A computationally efficient 3DHZETRN code capable of simulating High Charge (Z) and Energy (HZE) and light ions (including neutrons) under space-like boundary conditions with enhanced neutron and light ion propagation was recently developed for a simple homogeneous shield object. Monte Carlo benchmarks were used to verify the methodology in slab and spherical geometry, and the 3D corrections were shown to provide significant improvement over the straight-ahead approximation in some cases. In the present report, the new algorithms with well-defined convergence criteria are extended to inhomogeneous media within a shielded tissue slab and a shielded tissue sphere and tested against Monte Carlo simulation to verify the solution methods. The 3D corrections are again found to more accurately describe the neutron and light ion fluence spectra as compared to the straight-ahead approximation. These computationally efficient methods provide a basis for software capable of space shield analysis and optimization.
Exploring Rotations Due to Radiation Pressure: 2-D to 3-D Transition Is Interesting!
ERIC Educational Resources Information Center
Waxman, Michael A.
2010-01-01
Radiation pressure is an important topic within a standard physics course (see, in particular, Refs. 1 and 2). The physics of radiation pressure is described, the magnitude of it is derived, both for the case of a perfectly absorbing surface and of a perfect reflector, and various applications of this interesting effect are discussed, such as…
Lee, W.-L.; Gu, Y.; Liou, K. N.; ...
2015-05-19
We investigate 3-D mountain effects on solar flux distributions and their impact on surface hydrology over the western United States, specifically the Rocky Mountains and the Sierra Nevada, using the global CCSM4 (Community Climate System Model version 4; Community Atmosphere Model/Community Land Model – CAM4/CLM4) with a 0.23° × 0.31° resolution for simulations over 6 years. In a 3-D radiative transfer parameterization, we have updated surface topography data from a resolution of 1 km to 90 m to improve parameterization accuracy. In addition, we have also modified the upward-flux deviation (3-D–PP (plane-parallel)) adjustment to ensure that the energy balance atmore » the surface is conserved in global climate simulations based on 3-D radiation parameterization. We show that deviations in the net surface fluxes are not only affected by 3-D mountains but also influenced by feedbacks of cloud and snow in association with the long-term simulations. Deviations in sensible heat and surface temperature generally follow the patterns of net surface solar flux. The monthly snow water equivalent (SWE) deviations show an increase in lower elevations due to reduced snowmelt, leading to a reduction in cumulative runoff. Over higher-elevation areas, negative SWE deviations are found because of increased solar radiation available at the surface. Simulated precipitation increases for lower elevations, while it decreases for higher elevations, with a minimum in April. Liquid runoff significantly decreases at higher elevations after April due to reduced SWE and precipitation.« less
Lee, W. -L.; Gu, Y.; Liou, K. N.; Leung, L. R.; Hsu, H. -H.
2015-05-19
We investigate 3-D mountain effects on solar flux distributions and their impact on surface hydrology over the western United States, specifically the Rocky Mountains and the Sierra Nevada, using the global CCSM4 (Community Climate System Model version 4; Community Atmosphere Model/Community Land Model – CAM4/CLM4) with a 0.23° × 0.31° resolution for simulations over 6 years. In a 3-D radiative transfer parameterization, we have updated surface topography data from a resolution of 1 km to 90 m to improve parameterization accuracy. In addition, we have also modified the upward-flux deviation (3-D–PP (plane-parallel)) adjustment to ensure that the energy balance at the surface is conserved in global climate simulations based on 3-D radiation parameterization. We show that deviations in the net surface fluxes are not only affected by 3-D mountains but also influenced by feedbacks of cloud and snow in association with the long-term simulations. Deviations in sensible heat and surface temperature generally follow the patterns of net surface solar flux. The monthly snow water equivalent (SWE) deviations show an increase in lower elevations due to reduced snowmelt, leading to a reduction in cumulative runoff. Over higher-elevation areas, negative SWE deviations are found because of increased solar radiation available at the surface. Simulated precipitation increases for lower elevations, while it decreases for higher elevations, with a minimum in April. Liquid runoff significantly decreases at higher elevations after April due to reduced SWE and precipitation.
Lambros, Maria Polikandritou; Parsa, Cyrus; Mulamalla, HariChandana; Orlando, Robert; Lau, Bernard; Huang, Ying; Pon, Doreen; Chow, Moses
2011-02-04
Research highlights: {yields} We irradiated a 3-D human oral cell culture of keratinocytes and fibroblasts with 12 and 2 Gy. {yields} 6 h after irradiation the histopathology and apoptosis of the 3-D culture were evaluated. Microarrays were used to assess the gene expression in the irradiated 3-D tissue. {yields} 12 Gy induced significant histopathologic changes and cellular apoptosis. {yields} 12 Gy significantly affected genes of the NF-kB pathway, inflammatory cytokines and DAMPs. -- Abstract: Mucositis is a debilitating adverse effect of chemotherapy and radiation treatment. It is important to develop a simple and reliable in vitro model, which can routinely be used to screen new drugs for prevention and treatment of mucositis. Furthermore, identifying cell and molecular stresses especially in the initiation phase of mucositis in this model will help towards this end. We evaluated a three-dimensional (3-D) human oral cell culture that consisted of oral keratinocytes and fibroblasts as a model of oral mucositis. The 3-D cell culture model was irradiated with 12 or 2 Gy. Six hours after the irradiation we evaluated microscopic sections of the cell culture for evidence of morphologic changes including apoptosis. We used microarrays to compare the expression of several genes from the irradiated tissue with identical genes from tissue that was not irradiated. We found that irradiation with 12 Gy induced significant histopathologic effects including cellular apoptosis. Irradiation significantly affected the expression of several genes of the NF-kB pathway and several inflammatory cytokines, such as IL-1B, 1L-8, NF-kB1, and FOS compared to tissue that was not irradiated. We identified significant upregulation of several genes that belong to damage-associated molecular patterns (DAMPs) such as HMB1, S100A13, SA10014, and SA10016 in the 3-D tissues that received 12 Gy but not in tissues that received 2 Gy. In conclusion, this model quantifies radiation damage and this
Observation of 2p3d(1Po)→1s3d(1De) radiative transition in He-like Si, S, and Cl ions.
Kasthurirangan, S; Saha, J K; Agnihotri, A N; Bhattacharyya, S; Misra, D; Kumar, A; Mukherjee, P K; Santos, J P; Costa, A M; Indelicato, P; Mukherjee, T K; Tribedi, L C
2013-12-13
We present an experimental determination of the 2p3d(1Po)→1s3d(1De) x-ray line emitted from He-like Si, S, and Cl projectile ions, excited in collisions with thin carbon foils, using a high-resolution bent-crystal spectrometer. A good agreement between the observation and state-of-the-art relativistic calculations using the multiconfiguration Dirac-Fock formalism including the Breit interaction and QED effects implies the dominance of fluorescent decay over the autoionization process for the 2p3d(^{1}P^{o}) state of He-like heavy ions. This is the first observation of the fluorescence-active doubly excited states in He-like Si, S, and Cl ions.
3D printer generated thorax phantom with mobile tumor for radiation dosimetry.
Mayer, Rulon; Liacouras, Peter; Thomas, Andrew; Kang, Minglei; Lin, Liyong; Simone, Charles B
2015-07-01
This article describes the design, construction, and properties of an anthropomorphic thorax phantom with a moving surrogate tumor. This novel phantom permits detection of dose both inside and outside a moving tumor and within the substitute lung tissue material. A 3D printer generated the thorax shell composed of a chest wall, spinal column, and posterior regions of the phantom. Images of a computed tomography scan of the thorax from a patient with lung cancer provided the template for the 3D printing. The plastic phantom is segmented into two materials representing the muscle and bones, and its geometry closely matches a patient. A surrogate spherical plastic tumor controlled by a 3D linear stage simulates a lung tumor's trajectory during normal breathing. Sawdust emulates the lung tissue in terms of average and distribution in Hounsfield numbers. The sawdust also provides a forgiving medium that permits tumor motion and sandwiching of radiochromic film inside the mobile surrogate plastic tumor for dosimetry. A custom cork casing shields the film and tumor and eliminates film bending during extended scans. The phantom, lung tissue surrogate, and radiochromic film are exposed to a seven field plan based on an ECLIPSE plan for 6 MV photons from a Trilogy machine delivering 230 cGy to the isocenter. The dose collected in a sagittal plane is compared to the calculated plan. Gamma analysis finds 8.8% and 5.5% gamma failure rates for measurements of large amplitude trajectory and static measurements relative to the large amplitude plan, respectively. These particular gamma analysis results were achieved using parameters of 3% dose and 3 mm, for regions receiving doses >150 cGy. The plan assumes a stationary detection grid unlike the moving radiochromic film and tissues. This difference was experimentally observed and motivated calculated dose distributions that incorporated the phase of the tumor periodic motion. These calculations modestly improve agreement between
3D printer generated thorax phantom with mobile tumor for radiation dosimetry
Mayer, Rulon; Liacouras, Peter; Thomas, Andrew; Kang, Minglei; Lin, Liyong; Simone, Charles B.
2015-07-15
This article describes the design, construction, and properties of an anthropomorphic thorax phantom with a moving surrogate tumor. This novel phantom permits detection of dose both inside and outside a moving tumor and within the substitute lung tissue material. A 3D printer generated the thorax shell composed of a chest wall, spinal column, and posterior regions of the phantom. Images of a computed tomography scan of the thorax from a patient with lung cancer provided the template for the 3D printing. The plastic phantom is segmented into two materials representing the muscle and bones, and its geometry closely matches a patient. A surrogate spherical plastic tumor controlled by a 3D linear stage simulates a lung tumor’s trajectory during normal breathing. Sawdust emulates the lung tissue in terms of average and distribution in Hounsfield numbers. The sawdust also provides a forgiving medium that permits tumor motion and sandwiching of radiochromic film inside the mobile surrogate plastic tumor for dosimetry. A custom cork casing shields the film and tumor and eliminates film bending during extended scans. The phantom, lung tissue surrogate, and radiochromic film are exposed to a seven field plan based on an ECLIPSE plan for 6 MV photons from a Trilogy machine delivering 230 cGy to the isocenter. The dose collected in a sagittal plane is compared to the calculated plan. Gamma analysis finds 8.8% and 5.5% gamma failure rates for measurements of large amplitude trajectory and static measurements relative to the large amplitude plan, respectively. These particular gamma analysis results were achieved using parameters of 3% dose and 3 mm, for regions receiving doses >150 cGy. The plan assumes a stationary detection grid unlike the moving radiochromic film and tissues. This difference was experimentally observed and motivated calculated dose distributions that incorporated the phase of the tumor periodic motion. These calculations modestly improve agreement between
Focusing optics of a parallel beam CCD optical tomography apparatus for 3D radiation gel dosimetry.
Krstajić, Nikola; Doran, Simon J
2006-04-21
Optical tomography of gel dosimeters is a promising and cost-effective avenue for quality control of radiotherapy treatments such as intensity-modulated radiotherapy (IMRT). Systems based on a laser coupled to a photodiode have so far shown the best results within the context of optical scanning of radiosensitive gels, but are very slow ( approximately 9 min per slice) and poorly suited to measurements that require many slices. Here, we describe a fast, three-dimensional (3D) optical computed tomography (optical-CT) apparatus, based on a broad, collimated beam, obtained from a high power LED and detected by a charged coupled detector (CCD). The main advantages of such a system are (i) an acquisition speed approximately two orders of magnitude higher than a laser-based system when 3D data are required, and (ii) a greater simplicity of design. This paper advances our previous work by introducing a new design of focusing optics, which take information from a suitably positioned focal plane and project an image onto the CCD. An analysis of the ray optics is presented, which explains the roles of telecentricity, focusing, acceptance angle and depth-of-field (DOF) in the formation of projections. A discussion of the approximation involved in measuring the line integrals required for filtered backprojection reconstruction is given. Experimental results demonstrate (i) the effect on projections of changing the position of the focal plane of the apparatus, (ii) how to measure the acceptance angle of the optics, and (iii) the ability of the new scanner to image both absorbing and scattering gel phantoms. The quality of reconstructed images is very promising and suggests that the new apparatus may be useful in a clinical setting for fast and accurate 3D dosimetry.
3D printer generated thorax phantom with mobile tumor for radiation dosimetry
NASA Astrophysics Data System (ADS)
Mayer, Rulon; Liacouras, Peter; Thomas, Andrew; Kang, Minglei; Lin, Liyong; Simone, Charles B.
2015-07-01
This article describes the design, construction, and properties of an anthropomorphic thorax phantom with a moving surrogate tumor. This novel phantom permits detection of dose both inside and outside a moving tumor and within the substitute lung tissue material. A 3D printer generated the thorax shell composed of a chest wall, spinal column, and posterior regions of the phantom. Images of a computed tomography scan of the thorax from a patient with lung cancer provided the template for the 3D printing. The plastic phantom is segmented into two materials representing the muscle and bones, and its geometry closely matches a patient. A surrogate spherical plastic tumor controlled by a 3D linear stage simulates a lung tumor's trajectory during normal breathing. Sawdust emulates the lung tissue in terms of average and distribution in Hounsfield numbers. The sawdust also provides a forgiving medium that permits tumor motion and sandwiching of radiochromic film inside the mobile surrogate plastic tumor for dosimetry. A custom cork casing shields the film and tumor and eliminates film bending during extended scans. The phantom, lung tissue surrogate, and radiochromic film are exposed to a seven field plan based on an ECLIPSE plan for 6 MV photons from a Trilogy machine delivering 230 cGy to the isocenter. The dose collected in a sagittal plane is compared to the calculated plan. Gamma analysis finds 8.8% and 5.5% gamma failure rates for measurements of large amplitude trajectory and static measurements relative to the large amplitude plan, respectively. These particular gamma analysis results were achieved using parameters of 3% dose and 3 mm, for regions receiving doses >150 cGy. The plan assumes a stationary detection grid unlike the moving radiochromic film and tissues. This difference was experimentally observed and motivated calculated dose distributions that incorporated the phase of the tumor periodic motion. These calculations modestly improve agreement between
Mahmood, Abdul Salam; Venkatakrishnan, Krishnan; Tan, Bo
2013-11-14
This article presents 3-D aluminum micro-nanostructures for enhanced light absorption. Periodic microhole arrays were created by firing a train of femtosecond laser pulses at megahertz pulse frequency onto the surface of an aluminum target at ambient conditions. The laser trains ablated the target surface and created microholes leading to the generation of deposited nanostructures inside and around the microholes. These micro-nanostructures showed enhanced light absorption, which is attributed to surface plasmonics induced by the generation of both nano- and microstructures. These micro-nanostructures may be promising for solar cell applications.
NASA Astrophysics Data System (ADS)
Mahmood, Abdul Salam; Venkatakrishnan, Krishnan; Tan, Bo
2013-11-01
This article presents 3-D aluminum micro-nanostructures for enhanced light absorption. Periodic microhole arrays were created by firing a train of femtosecond laser pulses at megahertz pulse frequency onto the surface of an aluminum target at ambient conditions. The laser trains ablated the target surface and created microholes leading to the generation of deposited nanostructures inside and around the microholes. These micro-nanostructures showed enhanced light absorption, which is attributed to surface plasmonics induced by the generation of both nano- and microstructures. These micro-nanostructures may be promising for solar cell applications.
2013-01-01
This article presents 3-D aluminum micro-nanostructures for enhanced light absorption. Periodic microhole arrays were created by firing a train of femtosecond laser pulses at megahertz pulse frequency onto the surface of an aluminum target at ambient conditions. The laser trains ablated the target surface and created microholes leading to the generation of deposited nanostructures inside and around the microholes. These micro-nanostructures showed enhanced light absorption, which is attributed to surface plasmonics induced by the generation of both nano- and microstructures. These micro-nanostructures may be promising for solar cell applications. PMID:24225364
Song, Sung-Jin; Kim, Chang-Hwan
2002-05-01
Phased array transducers are quite often mounted on solid wedges with specific angles in many practical ultrasonic inspections of thin plates <10 mm in their thickness or welded joints with convex crowns. For the reliable application of phased array techniques with testing set-up, it is essential to have thorough understanding on the characteristics of radiation beam pattern produced in the interrogated medium. To address such a need, this paper proposes a systematic way to calculate full 3-D radiation beam patterns produced in the interrogated solid medium by phased array transducers mounted on a solid wedge. In order to investigate the characteristics of radiation beam patterns in steel, simulation is carried out for 7.5 MHz array transducers mounted on an acrylic wedge with the angle of 15.45 degrees with various of steering angles and/or focal planes.
Zhu, X; Driewer, J; Lei, Y; Zheng, D; Li, S; Zhang, Q; Zhang, M; Zhou, S; Cullip, T; Chang, S
2015-06-15
Purpose: Grid therapy has promising applications in the radiation treatment of bulky and large tumors. However, research and applications of grid therapy is limited by the accessibility of the specialized blocks that produce the grid of pencil-like radiation beams. In this study, a Cerrobend grid block was fabricated using a 3D printing technique. Methods: A grid block mold was designed with divergent tubes following beam central rays. The mold was printed using a resin with the working temperature below 230 °C. The melted Cerrobend liquid at 120°oC was cast into the resin mold to yield a block with a thickness of 7.4 cm. The grid had a hexagonal pattern, with each pencil beam diameter of 1.4 cm at the iso-center plane; the distance between the beam centers was 2 cm. The dosimetric properties of the grid block were studied using radiographic film and small field dosimeters. Results: the grid block was fabricated to be mounted at the third accessory mount of a Siemens Oncor linear accelerator. Fabricating a grid block using 3D printing is similar to making cutouts for traditional radiotherapy photon blocks, with the difference being that the mold was created by a 3D printer rather than foam. In this study, the valley-to-peak ratio for a 6MV photon grid beam was 20% at dmax, and 30% at 10 cm depth, respectively. Conclusion: We have demonstrated a novel process for implementing grid radiotherapy using 3D printing techniques. Compared to existing approaches, our technique combines reduced cost, accessibility, and flexibility in customization with efficient delivery. This lays the groundwork for future studies to improve our understanding of the efficacy of grid therapy and apply it to improve cancer treatment.
Lambros, Maria Polikandritou; Parsa, Cyrus; Mulamalla, HariChandana; Orlando, Robert; Lau, Bernard; Huang, Ying; Pon, Doreen; Chow, Moses
2011-02-04
Mucositis is a debilitating adverse effect of chemotherapy and radiation treatment. It is important to develop a simple and reliable in vitro model, which can routinely be used to screen new drugs for prevention and treatment of mucositis. Furthermore, identifying cell and molecular stresses especially in the initiation phase of mucositis in this model will help towards this end. We evaluated a three-dimensional (3-D) human oral cell culture that consisted of oral keratinocytes and fibroblasts as a model of oral mucositis. The 3-D cell culture model was irradiated with 12 or 2 Gy. Six hours after the irradiation we evaluated microscopic sections of the cell culture for evidence of morphologic changes including apoptosis. We used microarrays to compare the expression of several genes from the irradiated tissue with identical genes from tissue that was not irradiated. We found that irradiation with 12 Gy induced significant histopathologic effects including cellular apoptosis. Irradiation significantly affected the expression of several genes of the NF-kB pathway and several inflammatory cytokines, such as IL-1B, 1L-8, NF-kB1, and FOS compared to tissue that was not irradiated. We identified significant upregulation of several genes that belong to damage-associated molecular patterns (DAMPs) such as HMB1, S100A13, SA10014, and SA10016 in the 3-D tissues that received 12 Gy but not in tissues that received 2 Gy. In conclusion, this model quantifies radiation damage and this is an important first step towards the development 3-D tissue as a screening tool.
NASA Astrophysics Data System (ADS)
Clementel, N.; Madura, T. I.; Kruip, C. J. H.; Paardekooper, J.-P.
2015-06-01
Spectral observations of the massive colliding wind binary Eta Carinae show phase-dependent variations, in intensity and velocity, of numerous helium emission and absorption lines throughout the entire 5.54-yr orbit. Approaching periastron, the 3D structure of the wind-wind interaction region (WWIR) gets highly distorted due to the eccentric (e ˜ 0.9) binary orbit. The secondary star (ηB) at these phases is located deep within the primary's dense wind photosphere. The combination of these effects is thought to be the cause of the particularly interesting features observed in the helium lines at periastron. We perform 3D radiative transfer simulations of η Car's interacting winds at periastron. Using the SIMPLEX radiative transfer algorithm, we post-process output from 3D smoothed particle hydrodynamic simulations of the inner 150 au of the η Car system for two different primary star mass-loss rates (dot{M}_{η A}). Using previous results from simulations at apastron as a guide for the initial conditions, we compute 3D helium ionization maps. We find that, for higher dot{M}_{η A}, ηB He0+-ionizing photons are not able to penetrate into the pre-shock primary wind. He+ due to ηB is only present in a thin layer along the leading arm of the WWIR and in a small region close to the stars. Lowering dot{M}_{η A} allows ηB's ionizing photons to reach the expanding unshocked secondary wind on the apastron side of the system, and create a low fraction of He+ in the pre-shock primary wind. With apastron on our side of the system, our results are qualitatively consistent with the observed variations in strength and radial velocity of η Car's helium emission and absorption lines, which helps better constrain the regions where these lines arise.
First 3D radiative transfer with scattering for domain-decomposed MHD simulations
NASA Astrophysics Data System (ADS)
Hayek, W.
2008-12-01
This paper presents an implementation of the Gauss Seidel solver for radiative transfer with scattering in the Oslo Stagger Code. It fully supports MPI parallelism through domain decomposition of the simulation box, enabling fast computation of radiative transfer at a high resolution. Continuum and line opacities are treated with either a multigroup method or opacity sampling. Line scattering probabilities are estimated using the van Regemorter approximation for de-excitation rates of electron collisions. A solar-type test simulation with continuum and line scattering exhibits a steeper temperature gradient due to decreased radiative heating above the optical surface when compared with the strict local thermodynamic equilibrium (LTE) case. The classical van Regemorter approximation may overestimate the importance of line scattering, implying that the true temperature structure will be in between the LTE case and the scattering case considered here. It is demonstrated that continuum scattering is unimportant in the case of the Sun.
Influence of 3D Radiative Effects on Satellite Retrievals of Cloud Properties
NASA Technical Reports Server (NTRS)
Varnai, Tamas; Marshak, Alexander; Einaudi, Franco (Technical Monitor)
2001-01-01
When cloud properties are retrieved from satellite observations, the calculations apply 1D theory to the 3D world: they only consider vertical structures and ignore horizontal cloud variability. This presentation discusses how big the resulting errors can be in the operational retrievals of cloud optical thickness. A new technique was developed to estimate the magnitude of potential errors by analyzing the spatial patterns of visible and infrared images. The proposed technique was used to set error bars for optical depths retrieved from new MODIS measurements. Initial results indicate that the 1 km resolution retrievals are subject to abundant uncertainties. Averaging over 50 by 50 km areas reduces the errors, but does not remove them completely; even in the relatively simple case of high sun (30 degree zenith angle), about a fifth of the examined areas had biases larger than ten percent. As expected, errors increase substantially for more oblique illumination.
NASA Technical Reports Server (NTRS)
Chin, Mian; Ginoux, Paul; Torres, Omar; Zhao, Xue-Peng
2005-01-01
We propose a research project to incorporate a global 3-D model and satellite data into the multi-national Aerosol Characterization Experiment-Asia (ACE-Asia) mission. Our objectives are (1) to understand the physical, chemical, and optical properties of aerosols and the processes that control those properties over the Asian-Pacific region, (2) to investigate the interaction between aerosols and tropospheric chemistry, and (3) to determine the aerosol radiative forcing over the Asia-Pacific region. We will use the Georgia TecWGoddard Global Ozone Chemistry Aerosol Radiation and Transport (GOCART) model to link satellite observations and the ACE-Asia measurements. First, we will use the GOCART model to simulate aerosols and related species, and evaluate the model with satellite and in-situ observations. Second, the model generated aerosol vertical profiles and compositions will be used to validate the satellite products; and the satellite data will be used for during- and post- mission analysis. Third, we will use the model to analyze and interpret both satellite and ACE- Asia field campaign data and investigate the aerosol-chemistry interactions. Finally, we will calculate aerosol radiative forcing over the Asian-Pacific region, and assess the influence of Asian pollution in the global atmosphere. We propose a research project to incorporate a global 3-D model and satellite data into
Calculation of the nuclear material inventory in a sealed vault by 3D radiation mapping
Adsley, Ian; Klepikov, Alexander; Tur, Yevgeniy; Wells, David
2013-07-01
The paper relates to the determination of the amount of nuclear material contained in a closed, concrete lined vault at the Aktau fast breeder reactor in Kazakhstan. This material had been disposed into the vault after examination in an experimental hot cell directly above the vault. In order to comply with IAEA Safeguards requirements it was necessary to determine the total quantities of nuclear materials - enriched uranium and plutonium - that were held with Kazakhstan. Although it was possible to determine the inventory of all of the accessible nuclear material - the quantity remaining in the vault was unknown. As part of the Global Threat Reduction Programme the UK Government funded a project to determine the inventory of these nuclear materials in this vault. This involved drilling three penetrations through the concrete lined roof of the vault; this enabled the placement of lights and a camera into the vault through two penetrations; while the third penetration enabled a lightweight manipulator arm to be introduced into the vault. This was used to provide a detailed 3D mapping of the dose rate within the vault and it also enabled the collection of samples for radionuclide analysis. The deconvolution of the 3D dose rate profile within the vault enabled the determination of the gamma emitting source distribution on the floor and walls of the vault. The samples were analysed to determine the fingerprint of those radionuclides producing the gamma dose - namely {sup 137}Cs and {sup 60}Co - to the nuclear materials. The combination of the dose rate source terms on the surfaces of the vault and the fingerprint then enabled the quantities of nuclear materials to be determined. The project was a major success and enabled the Kazakhstan Government to comply with IAEA Safeguards requirements. It also enabled the UK DECC Ministry to develop a technology of national (and international) use. Finally the technology was well received by IAEA Safeguards as an acceptable
3D sensitive voxel detector of ionizing radiation based on Timepix device
NASA Astrophysics Data System (ADS)
Soukup, P.; Jakubek, J.; Vykydal, Z.
2011-01-01
Position sensitive detectors are evolving towards higher segmentation geometries from 0D (single pad) over 1D (strip) to 2D (pixel) detectors. Each step has brought up substantial expansion in the field of applications. The next logical step in this evolution is to design a 3D, i.e. voxel detector. The voxel detector can be constructed from 2D volume element detectors arranged in layers forming a 3D matrix of sensitive elements — voxels. Such detectors can effectively record tracks of energetic particles. By proper analysis of these tracks it is possible to determine the type, direction and energy of the primary particle. One of the prominent applications of such device is in the localization and identification of gamma and neutron sources in the environment. It can be also used for emission and transmission radiography in many fields where standard imagers are currently utilized. The qualitative properties of current imagers such as: spatial resolution, efficiency, directional sensitivity, energy sensitivity and selectivity (background suppression) can be improved. The first prototype of a voxel detector was built using a number of Timepix devices. Timepix is hybrid semiconductor detector consisting of a segmented semiconductor sensor bump-bonded to a readout chip. Each sensor contains 256x256 square pixels of 55 μm size. The voxel detector prototype was successfully tested to prove the concept functionality. The detector has a modular architecture with a daisy chain connection of the individual detector layers. This permits easy rearrangement due to its modularity, while keeping a single readout system for a variable number of detector layers. A limitation of this approach is the relatively large inter-layer distance (4 mm) compared to the pixel thickness (0.3 mm). Therefore the next step in the design is to decrease the space between the 2D detectors.
TU-CD-207-04: Radiation Exposure Comparisons of CESM with 2D FFDM and 3D Tomosynthesis Mammography
James, J; Boltz, T; Pavlicek, W
2015-06-15
Purpose: While mammography is considered the standard for front-line breast cancer screening, image sensitivity and specificity can be affected by factors like dense breast tissue. Contrast-enhanced spectral mammography (CESM) shows promising initial results for dense breasts but comes at the cost of increased dose compared with full-field-digital-mammography (FFDM). The goal of this study is to quantitatively assess the dose increase of CESM in comparison with 2D-FFDM and 3D-Tomo at varying breast thickness. Methods: The experiments were conducted on a Hologic-Selenia-Dimensions system that performed 2D-FFDM, 3D-Tomo and CESM (high and low energies) on regular (50/50) and dense (70/30) breast tissue-mimicking phantoms. Both the phantoms had 6, 1-cm thick slabs (total thickness 6cm), compressed at 20-lbs using an 18×24 paddle. A single exposure was performed for each of the 3 mammo techniques with the following settings: AEC-Auto; Focal Spot-Large; kVp-Auto; mAs- Auto, Target/Filter combination-Auto; AEC Sensor/Exposure compensation Step-2/0. Average glandular dose (AGD) in mGy was obtained and compared as a function of breast thickness (1 – 6 cm) for both the phantom types. Results: The study shows that dose from the total CESM from 50/50 phantom at a breast thickness of a) 4.5 cm was 37.5% higher than 2D-FFDM and 30% higher than 3D-Tomo, b) 6 cm was 36.2% higher than 2D-FFDM and 41% higher than 3D-Tomo. For a dense breast tissue of 70/30 phantom, it was found that CESM dose at a breast thickness of: a) 4.5 cm was 33.3% higher than 2D-FFDM and 28.8% higher than 3D-Tomo, b) 6 cm was 35.4% higher than 2D-FFDM and 48.0% higher than 3D-Tomo. The overall CESM dose for the dense breast phantom was 12.5% higher at 4.5cm and 35% higher at 6 cm compared to the 50/50 phantom. Conclusion: This quantitative comparison study showed that CESM technique has an increased radiation dose compared to conventional 2D-FFDM and 3D-Tomo.
Shin, Dongho; Yoon, Myonggeun; Park, Sung Yong; Park, Dong Hyun; Lee, Se Byeong; Kim, Dae Yong; Cho, Kwan Ho
2007-01-01
Intensity-modulated radiation therapy (IMRT) is one of the most complex applications of radiotherapy that requires patient-specific quality assurance (QA). Here, we describe a novel method of 3-dimensional (3D) dose-verification using 12 acrylic slabs in a 3D phantom (30 x 30 x 12 cm(3)) with extended dose rate (EDR2) films, which is both faster than conventionally used methods, and clinically useful. With custom-written software modules written in Microsoft Excel Visual Basic Application, the measured and planned dose distributions for the axial, coronal, and sagittal planes were superimposed by matching their origins, and the point doses were compared at all matched positions. Then, an optimization algorithm was used to correct the detected setup errors. The results show that this optimization method significantly reduces the average maximum dose difference by 7.73% and the number of points showing dose differences of more than 5% by 8.82% relative to the dose differences without an optimization. Our results indicate that the dose difference was significantly decreased with optimization and this optimization method is statistically reliable and effective. The results of 3D optimization are discussed in terms of various patient-specific QA data obtained from statistical analyses.
Doppler effects on 3-D non-LTE radiation transport and emission spectra.
Giuliani, J. L.; Davis, J.; DasGupta, A.; Apruzese, John P.; Jennings, Christopher A.; Clark, R. W.; Ampleford, David J.; Bailey, James E.; Thornhill, Joseph W.; Cuneo, Michael Edward; Rochau, Gregory Alan; Coverdale, Christine Anne; Jones, Brent Manley; Hansen, Stephanie B.
2010-10-01
Spatially and temporally resolved X-ray emission lines contain information about temperatures, densities, velocities, and the gradients in a plasma. Extracting this information from optically thick lines emitted from complex ions in dynamic, three-dimensional, non-LTE plasmas requires self-consistent accounting for both non-LTE atomic physics and non-local radiative transfer. We present a brief description of a hybrid-structure spectroscopic atomic model coupled to an iterative tabular on-the-spot treatment of radiative transfer that can be applied to plasmas of arbitrary material composition, conditions, and geometries. The effects of Doppler line shifts on the self-consistent radiative transfer within the plasma and the emergent emission and absorption spectra are included in the model. Sample calculations for a two-level atom in a uniform cylindrical plasma are given, showing reasonable agreement with more sophisticated transport models and illustrating the potential complexity - or richness - of radially resolved emission lines from an imploding cylindrical plasma. Also presented is a comparison of modeled L- and K-shell spectra to temporally and radially resolved emission data from a Cu:Ni plasma. Finally, some shortcomings of the model and possible paths for improvement are discussed.
The feasibility assessment of radiation dose of movement 3D NIPAM gel by magnetic resonance imaging
NASA Astrophysics Data System (ADS)
Hsieh, Chih-Ming; Leung, Joseph Hang; Ng, Yu-Bun; Cheng, Chih-Wu; Sun, Jung-Chang; Lin, Ping-Chin; Hsieh, Bor-Tsung
2015-11-01
NIPAM dosimeter is widely accepted and recommended for its 3D distribution and accuracy in dose absorption. Up to the moment, most research works on dose measurement are based on a fixed irradiation target without the consideration of the effect from physiological motion. We present a study to construct a respiratory motion simulating patient anatomical and dosimetry model for the study of dosimetic effect of organ motion. The dose on fixed and motion targets was measured by MRI after a dose adminstration of 1, 2, 5, 8, and 10 Gy from linear accelerator. Comparison of two situations is made. The average sensitivity of fixed NIPAM was 0.1356 s-1/Gy with linearity R2=0.998. The average sensitivity of movement NIPAM was 0.1366 s-1/Gy with linearity R2=0.998 both having only 0.001 of the sensitivity difference. The difference between the two based on dose rate dependency, position and depth was not significant. There was thus no apparent impact on NIPAM dosimeter from physiological motion. The high sensitivity, linearity and stability of NIPAM dosimeter proved to be an ideal apparatus in the dose measurement in these circumstances.
Reddy, A.V.; Kothe, D.B.; Lam, K.L.
1997-06-01
The Los Alamos National Laboratory (LANL) is currently developing a new casting simulation tool (known as Telluride) that employs robust, high-resolution finite volume algorithms for incompressible fluid flow, volume tracking of interfaces, and solidification physics on three-dimensional (3-D) unstructured meshes. Their finite volume algorithms are based on colocated cell-centered schemes that are formally second order in time and space. The flow algorithm is a 3-D extension of recent work on projection method solutions of the Navier-Stokes (NS) equations. Their volume tracking algorithm can accurately track topologically complex interfaces by approximating the interface geometry as piecewise planar. Coupled to their fluid flow algorithm is a comprehensive binary alloy solidification model that incorporates macroscopic descriptions of heat transfer, solute redistribution, and melt convection as well as a microscopic description of segregation. The finite volume algorithms, which are efficient, parallel, and robust, can yield high-fidelity solutions on a variety of meshes, ranging from those that are structured orthogonal to fully unstructured (finite element). The authors discuss key computer science issues that have enabled them to efficiently parallelize their unstructured mesh algorithms on both distributed and shared memory computing platforms. These include their functionally object-oriented use of Fortran 90 and new parallel libraries for gather/scatter functions (PGSLib) and solutions of linear systems of equations (JTpack90). Examples of their current capabilities are illustrated with simulations of mold filling and solidification of complex 3-D components currently being poured in LANL foundries.
Development and Validation of a Polarimetric-MCScene 3D Atmospheric Radiation Model
Berk, Alexander; Hawes, Frederick; Fox, Marsha
2016-03-15
Polarimetric measurements can substantially enhance the ability of both spectrally resolved and single band imagery to detect the proliferation of weapons of mass destruction, providing data for locating and identifying facilities, materials, and processes of undeclared and proliferant nuclear weapons programs worldwide. Unfortunately, models do not exist that efficiently and accurately predict spectral polarized signatures for the materials of interest embedded in complex 3D environments. Having such a model would enable one to test hypotheses and optimize both the enhancement of scene contrast and the signal processing for spectral signature extraction. The Phase I set the groundwork for development of fully validated polarimetric spectral signature and scene simulation models. This has been accomplished 1. by (a) identifying and downloading state-of-the-art surface and atmospheric polarimetric data sources, (b) implementing tools for generating custom polarimetric data, and (c) identifying and requesting US Government funded field measurement data for use in validation; 2. by formulating an approach for upgrading the radiometric spectral signature model MODTRAN to generate polarimetric intensities through (a) ingestion of the polarimetric data, (b) polarimetric vectorization of existing MODTRAN modules, and (c) integration of a newly developed algorithm for computing polarimetric multiple scattering contributions; 3. by generating an initial polarimetric model that demonstrates calculation of polarimetric solar and lunar single scatter intensities arising from the interaction of incoming irradiances with molecules and aerosols; 4. by developing a design and implementation plan to (a) automate polarimetric scene construction and (b) efficiently sample polarimetric scattering and reflection events, for use in a to be developed polarimetric version of the existing first-principles synthetic scene simulation model, MCScene; and 5. by planning a validation field
Accelerating 3D radiative transfer for realistic OCO-2 cloud-aerosol scenes
NASA Astrophysics Data System (ADS)
Schmidt, S.; Massie, S. T.; Platnick, S. E.; Song, S.
2014-12-01
The recently launched NASA OCO-2 satellite is expected to provide important information about the carbon dioxide distribution in the troposphere down to Earth's surface. Among the challenges in accurately retrieving CO2 concentration from the hyperspectral observations in each of the three OCO-2 bands are cloud and aerosol impacts on the observed radiances. Preliminary studies based on idealized cloud fields have shown that they can lead to spectrally dependent radiance perturbations which differ from band to band and may lead to biases in the derived products. Since OCO-2 was inserted into the A-Train, it is only natural to capitalize on sensor synergies with other instruments, in this case on the cloud and aerosol scene context that is provided by MODIS and CALIOP. Our approach is to use cloud imagery (especially for inhomogeneous scenes) for predicting the hyperspectral observations within a collocated OCO-2 footprint and comparing with the observations, which allows a systematic assessment of the causes for biases in the retrievals themselves, and their manifestation in spectral residuals for various different cloud types and distributions. Simulating a large number of cases with line-by-line calculations using a 3D code is computationally prohibitive even on large parallel computers. Therefore, we developed a number of acceleration approaches. In this contribution, we will analyze them in terms of their speed and accuracy, using cloud fields from airborne imagery collected during a recent NASA field experiment (SEAC4RS) as proxy for different types of inhomogeneous cloud fields. The broader goal of this effort is to improve OCO-2 retrievals in the vicinity of cloud fields, and to extend the range of conditions under which the instrument will provide useful results.
NASA Astrophysics Data System (ADS)
Munbodh, R.; Moseley, D. J.
2014-03-01
We report results of an intensity-based 2D-3D rigid registration framework for patient positioning and monitoring during brain radiotherapy. We evaluated two intensity-based similarity measures, the Pearson Correlation Coefficient (ICC) and Maximum Likelihood with Gaussian noise (MLG) derived from the statistics of transmission images. A useful image frequency band was identified from the bone-to-no-bone ratio. Validation was performed on gold-standard data consisting of 3D kV CBCT scans and 2D kV radiographs of an anthropomorphic head phantom acquired at 23 different poses with parameter variations along six degrees of freedom. At each pose, a single limited field of view kV radiograph was registered to the reference CBCT. The ground truth was determined from markers affixed to the phantom and visible in the CBCT images. The mean (and standard deviation) of the absolute errors in recovering each of the six transformation parameters along the x, y and z axes for ICC were varphix: 0.08(0.04)°, varphiy: 0.10(0.09)°, varphiz: 0.03(0.03)°, tx: 0.13(0.11) mm, ty: 0.08(0.06) mm and tz: 0.44(0.23) mm. For MLG, the corresponding results were varphix: 0.10(0.04)°, varphiy: 0.10(0.09)°, varphiz: 0.05(0.07)°, tx: 0.11(0.13) mm, ty: 0.05(0.05) mm and tz: 0.44(0.31) mm. It is feasible to accurately estimate all six transformation parameters from a 3D CBCT of the head and a single 2D kV radiograph within an intensity-based registration framework that incorporates the physics of transmission images.
NASA Astrophysics Data System (ADS)
Lee, Wonho; Wehe, David
2004-09-01
Portable γ-ray imaging systems operating from 100keV to 3MeV are used in nuclear medicine, astrophysics and industrial applications. 2D images of γ-rays are common in many fields using radiation-detection systems (Appl. Opt. 17 (3) (1978) 337; IEEE Trans. Nucl. Sci. Ns- 31 (1984) 771; IEEE Trans. Nucl. Sci. NS- 44 (3) (1997) 911). In this work, the 3D position of a radiation source is determined by a portable gamma-ray imaging system. 2D gamma-ray images were obtained from different positions of the gamma camera and the third dimension, the distance between the detector and the radiation source, was calculated using triangulation. The imaging system consists of a 4×4 array of CsI(Tl) detectors coupled to photodiode detectors that are mounted on an automated table which can precisely position the angular axis of the camera. Lead shields the detector array from the background radiation. Additionally, a CCD camera is attached to the top of the gamma camera and provides coincident 2D visual information. The inferred distances from the center of the two measurement points and a radiation source had less than a 3% error within a range of 3m. The radiation image from the gamma camera and the visual image from CCD camera are superimposed into one combined image using a maximum-likelihood (ML) algorithm to make the image more precise. The response functions for the ML algorithm depend on the energy of incident radiation, and are obtained from both experiments and simulations. The energy-dependent response functions are shown to yield better imaging performance compared with the fixed energy response function commonly used previously.
Radiation and polarization signatures of the 3D multizone time-dependent hadronic blazar model
Zhang, Haocheng; Diltz, Chris; Bottcher, Markus
2016-09-23
We present a newly developed time-dependent three-dimensional multizone hadronic blazar emission model. By coupling a Fokker–Planck-based lepto-hadronic particle evolution code, 3DHad, with a polarization-dependent radiation transfer code, 3DPol, we are able to study the time-dependent radiation and polarization signatures of a hadronic blazar model for the first time. Our current code is limited to parameter regimes in which the hadronic γ-ray output is dominated by proton synchrotron emission, neglecting pion production. Our results demonstrate that the time-dependent flux and polarization signatures are generally dominated by the relation between the synchrotron cooling and the light-crossing timescale, which is largely independent of the exact model parameters. We find that unlike the low-energy polarization signatures, which can vary rapidly in time, the high-energy polarization signatures appear stable. Lastly, future high-energy polarimeters may be able to distinguish such signatures from the lower and more rapidly variable polarization signatures expected in leptonic models.
Radiation and polarization signatures of the 3D multizone time-dependent hadronic blazar model
Zhang, Haocheng; Diltz, Chris; Bottcher, Markus
2016-09-23
We present a newly developed time-dependent three-dimensional multizone hadronic blazar emission model. By coupling a Fokker–Planck-based lepto-hadronic particle evolution code, 3DHad, with a polarization-dependent radiation transfer code, 3DPol, we are able to study the time-dependent radiation and polarization signatures of a hadronic blazar model for the first time. Our current code is limited to parameter regimes in which the hadronic γ-ray output is dominated by proton synchrotron emission, neglecting pion production. Our results demonstrate that the time-dependent flux and polarization signatures are generally dominated by the relation between the synchrotron cooling and the light-crossing timescale, which is largely independent ofmore » the exact model parameters. We find that unlike the low-energy polarization signatures, which can vary rapidly in time, the high-energy polarization signatures appear stable. Lastly, future high-energy polarimeters may be able to distinguish such signatures from the lower and more rapidly variable polarization signatures expected in leptonic models.« less
NASA Astrophysics Data System (ADS)
Le Hardy, D.; Favennec, Y.; Rousseau, B.; Hecht, F.
2017-04-01
The contribution of this paper relies in the development of numerical algorithms for the mathematical treatment of specular reflection on borders when dealing with the numerical solution of radiative transfer problems. The radiative transfer equation being integro-differential, the discrete ordinates method allows to write down a set of semi-discrete equations in which weights are to be calculated. The calculation of these weights is well known to be based on either a quadrature or on angular discretization, making the use of such method straightforward for the state equation. Also, the diffuse contribution of reflection on borders is usually well taken into account. However, the calculation of accurate partition ratio coefficients is much more tricky for the specular condition applied on arbitrary geometrical borders. This paper presents algorithms that calculate analytically partition ratio coefficients needed in numerical treatments. The developed algorithms, combined with a decentered finite element scheme, are validated with the help of comparisons with analytical solutions before being applied on complex geometries.
The 3D Radiative Effects of Clouds in Aerosol Retrieval: Can we Remove Them?
Kassianov, Evgueni I.; Ovchinnikov, Mikhail; Berg, Larry K.; McFarlane, Sally A.; Flynn, Connor J.; Ferrare, Richard; Hostetler, Chris A.
2009-09-30
We outline a new method, called the ratio method, developed to retrieve aerosol optical depth (AOD) under broken cloud conditions and present validation results from sensitivity and case studies. Results of the sensitivity study demonstrate that the ratio method, which exploits ratios of reflectances in the visible spectral range, has the potential for accurate AOD retrievals under different observational conditions and random errors in input data. Also, we examine the performance of the ratio method using aircraft data collected during the Cloud and Land Surface Interaction Campaign (CLASIC) and the Cumulus Humilis Aerosol Processing Study (CHAPS). Results of the case study suggest that the ratio method has the ability to retrieve AOD from multi-spectral aircraft observations of the reflected solar radiation.
Johnson, Timothy D; Taylor, Jeremy M G; Ten Haken, Randall K; Eisbruch, Avraham
2005-10-01
A goal of cancer radiation therapy is to deliver maximum dose to the target tumor while minimizing complications due to irradiation of critical organs. Technological advances in 3D conformal radiation therapy has allowed great strides in realizing this goal; however, complications may still arise. Critical organs may be adjacent to tumors or in the path of the radiation beam. Several mathematical models have been proposed that describe the relationship between dose and observed functional complication; however, only a few published studies have successfully fit these models to data using modern statistical methods which make efficient use of the data. One complication following radiation therapy of head and neck cancers is the patient's inability to produce saliva. Xerostomia (dry mouth) leads to high susceptibility to oral infection and dental caries and is, in general, unpleasant and an annoyance. We present a dose-damage-injury model that subsumes any of the various mathematical models relating dose to damage. The model is a nonlinear, longitudinal mixed effects model where the outcome (saliva flow rate) is modeled as a mixture of a Dirac measure at zero and a gamma distribution whose mean is a function of time and dose. Bayesian methods are used to estimate the relationship between dose delivered to the parotid glands and the observational outcome-saliva flow rate. A summary measure of the dose-damage relationship is modeled and assessed by a Bayesian chi(2) test for goodness-of-fit.
3D measurement of the radiation distribution in a water phantom in a hadron therapy beam
NASA Astrophysics Data System (ADS)
Opalka, L.; Granja, C.; Hartmann, B.; Jakubek, J.; Jaekel, O.; Martisikova, M.; Pospisil, S.; Solc, J.
2012-01-01
Hadron therapy is a highly precise radio-therapeutic method with many advantages especially in cases when the tumour is close to sensitive organs where standard treatments cannot be used. For reliable treatment planning it is necessary to have calculation tools for maximization of the dose delivered to the targeted tissue and minimization of the dose outside of it. While the main physical processes in material irradiated by hadron beams are known, in reality the processes involved are complex so that analytical computations are impossible. Thus, the planning tools to incorporate simplified models and numerical approximations and an experimental method for high precision verification of the models within phantoms is desired. The development of sensitive, high resolution and online methods for measurement of the radiation environment inside of the irradiated object is the aim of this work. Such measurements are made possible by the resolving power of the state-of-the-art pixel detector Timepix. This quantum counting imaging device is able to record the characteristic shapes of the particle traces including their energies deposited in the detector. All these data recorded for each event allow to estimate the particle type, its energy and direction of flight. Event-by-event analysis is done using pattern recognition of the characteristic traces. The objective of the experiment is the detection and characterization of secondary radiation generated by the primary therapeutic beams in tissue equivalent material (water). Measurements were performed inside of a water phantom irradiated by a carbon beam at the Heidelberg Ion-Beam Therapy Center (HIT).
3D unmanned aerial vehicle radiation mapping for assessing contaminant distribution and mobility
NASA Astrophysics Data System (ADS)
Martin, P. G.; Kwong, S.; Smith, N. T.; Yamashiki, Y.; Payton, O. D.; Russell-Pavier, F. S.; Fardoulis, J. S.; Richards, D. A.; Scott, T. B.
2016-10-01
Following the events of March 2011 at the Fukushima Daiichi Nuclear Power Plant, significant quantities of radioactive material were released into the local and wider global environment. At five years since the incident, much expense is being currently devoted to the remediation of a large portion of eastern Japan contaminated primarily by radiocesium, yet further significant expenditure will be required over the succeeding decades to complete this clean-up. People displaced from their homes by the incident are now increasingly keen to return, making it more important than ever to provide accurate quantification and representation of any residual radiological contamination. Presented here is the use of an unmanned aerial vehicle equipped with a laser rangefinder unit to generate a three dimensional point-cloud of an area onto which a radiation contamination map, also obtained concurrently via the unmanned aerial platform, can be rendered. An exemplar site of an un-remediated farm consisting of multiple stepped rice paddy fields with a dedicated irrigation system was used for this work. The results obtained show that heightened radiological contamination exists around the site within the drainage network where material is observed to have collected, having been transported by transient water runoff events. These results obtained in May 2014 suggest that a proportion of the fallout material is highly mobile within the natural environment and is likely to be transported further through the system over the succeeding years.
Sumida, Iori; Yamaguchi, Hajime; Kizaki, Hisao; Aboshi, Keiko; Tsujii, Mari; Yamada, Yuji; Yagi, Masashi; Ogawa, Kazuhiko
2015-01-01
Pretreatment dose verification with beam-by-beam analysis for intensity-modulated radiation therapy (IMRT) is commonly performed with a gantry angle of 0° using a 2D diode detector array. Any changes in multileaf collimator (MLC) position between the actual treatment gantry angle and 0° may result in deviations from the planned dose. We evaluated the effects of MLC positioning errors between the actual treatment gantry angles and nominal gantry angles. A gantry angle correction (GAC) factor was generated by performing a non-gap test at various gantry angles using an electronic portal imaging device (EPID). To convert pixel intensity to dose at the MLC abutment positions, a non-gap test was performed using an EPID and a film at 0° gantry angle. We then assessed the correlations between pixel intensities and doses. Beam-by-beam analyses for 15 prostate IMRT cases as patient-specific quality assurance were performed with a 2D diode detector array at 0° gantry angle to determine the relative dose error for each beam. The resulting relative dose error with or without GAC was added back to the original dose grid for each beam. We compared the predicted dose distributions with or without GAC for film measurements to validate GAC effects. A gamma pass rate with a tolerance of 2%/2 mm was used to evaluate these dose distributions. The gamma pass rate with GAC was higher than that without GAC (P = 0.01). The predicted dose distribution improved with GAC, although the dosimetric effect to a patient was minimal. PMID:25742866
Sumida, Iori; Yamaguchi, Hajime; Kizaki, Hisao; Aboshi, Keiko; Tsujii, Mari; Yamada, Yuji; Yagi, Masashi; Ogawa, Kazuhiko
2015-05-01
Pretreatment dose verification with beam-by-beam analysis for intensity-modulated radiation therapy (IMRT) is commonly performed with a gantry angle of 0° using a 2D diode detector array. Any changes in multileaf collimator (MLC) position between the actual treatment gantry angle and 0° may result in deviations from the planned dose. We evaluated the effects of MLC positioning errors between the actual treatment gantry angles and nominal gantry angles. A gantry angle correction (GAC) factor was generated by performing a non-gap test at various gantry angles using an electronic portal imaging device (EPID). To convert pixel intensity to dose at the MLC abutment positions, a non-gap test was performed using an EPID and a film at 0° gantry angle. We then assessed the correlations between pixel intensities and doses. Beam-by-beam analyses for 15 prostate IMRT cases as patient-specific quality assurance were performed with a 2D diode detector array at 0° gantry angle to determine the relative dose error for each beam. The resulting relative dose error with or without GAC was added back to the original dose grid for each beam. We compared the predicted dose distributions with or without GAC for film measurements to validate GAC effects. A gamma pass rate with a tolerance of 2%/2 mm was used to evaluate these dose distributions. The gamma pass rate with GAC was higher than that without GAC (P = 0.01). The predicted dose distribution improved with GAC, although the dosimetric effect to a patient was minimal.
High-resolution, 3D radiative transfer modeling. I. The grand-design spiral galaxy M 51
NASA Astrophysics Data System (ADS)
De Looze, Ilse; Fritz, Jacopo; Baes, Maarten; Bendo, George J.; Cortese, Luca; Boquien, Médéric; Boselli, Alessandro; Camps, Peter; Cooray, Asantha; Cormier, Diane; Davies, Jon I.; De Geyter, Gert; Hughes, Thomas M.; Jones, Anthony P.; Karczewski, Oskar Ł.; Lebouteiller, Vianney; Lu, Nanyao; Madden, Suzanne C.; Rémy-Ruyer, Aurélie; Spinoglio, Luigi; Smith, Matthew W. L.; Viaene, Sebastien; Wilson, Christine D.
2014-11-01
Context. Dust reprocesses about half of the stellar radiation in galaxies. The thermal re-emission by dust of absorbed energy is considered to be driven merely by young stars so is often applied to tracing the star formation rate in galaxies. Recent studies have argued that the old stellar population might be responsible for a non-negligible fraction of the radiative dust heating. Aims: In this work, we aim to analyze the contribution of young (≲100 Myr) and old (~10 Gyr) stellar populations to radiative dust heating processes in the nearby grand-design spiral galaxy M 51 using radiative transfer modeling. High-resolution 3D radiative transfer (RT) models are required to describe the complex morphologies of asymmetric spiral arms and clumpy star-forming regions and to model the propagation of light through a dusty medium. Methods: In this paper, we present a new technique developed to model the radiative transfer effects in nearby face-on galaxies. We construct a high-resolution 3D radiative transfer model with the Monte-Carlo code SKIRT to account for the absorption, scattering, and non-local thermal equilibrium (NLTE) emission of dust in M 51. The 3D distribution of stars is derived from the 2D morphology observed in the IRAC 3.6 μm, GALEX FUV, Hα, and MIPS 24 μm wavebands, assuming an exponential vertical distribution with an appropriate scale height. The dust geometry is constrained through the far-ultraviolet (FUV) attenuation, which is derived from the observed total-infrared-to-far-ultraviolet luminosity ratio. The stellar luminosity, star formation rate, and dust mass have been scaled to reproduce the observed stellar spectral energy distribution (SED), FUV attenuation, and infrared SED. Results: The dust emission derived from RT calculations is consistent with far-infrared and submillimeter observations of M 51, implying that the absorbed stellar energy is balanced by the thermal re-emission of dust. The young stars provide 63% of the energy for
Alani, Shlomo; Soyfer, Viacheslav; Strauss, Natan; Schifter, Dan; Corn, Benjamin W.
2009-06-01
Purpose: Although chemoradiotherapy was considered the standard adjuvant treatment for gastric cancer, a recent Phase III trial (Medical Research Council Adjuvant Gastric Infusional Chemotherapy [MAGIC]) did not include radiotherapy in the randomization scheme because it was considered expendable. Given radiotherapy's potential, efforts needed to be made to optimize its use for treating gastric cancer. We assessed whether intensity-modulated radiotherapy (IMRT) could improve upon our published results in patients treated with three-dimensional (3D) conformal therapy. Methods and Materials: Fourteen patients with adenocarcinoma of the stomach were treated with adjuvant chemoradiotherapy using a noncoplanar four-field arrangement. Subsequently, a nine-field IMRT plan was designed using a CMS Xio IMRT version 4.3.3 module. Two IMRT beam arrangements were evaluated: beam arrangement 1 consisted of gantry angles of 0 deg., 53 deg., 107 deg., 158 deg., 204 deg., 255 deg., and 306 deg.. Beam arrangement 2 consisted of gantry angles of 30 deg., 90 deg., 315 deg., and 345 deg.; a gantry angle of 320 deg./couch, 30 deg.; and a gantry angle of 35{sup o}/couch, 312{sup o}. Both the target volume coverage and the dose deposition in adjacent critical organs were assessed in the plans. Dose-volume histograms were generated for the clinical target volume, kidneys, spine, and liver. Results: Comparison of the clinical target volumes revealed satisfactory coverage by the 95% isodose envelope using either IMRT or 3D conformal therapy. However, IMRT was only marginally better than 3D conformal therapy at protecting the spine and kidneys from radiation. Conclusions: IMRT confers only a marginal benefit in the adjuvant treatment of gastric cancer and should be used only in the small subset of patients with risk factors for kidney disease or those with a preexisting nephropathy.
A Patient-Specific Polylactic Acid Bolus Made by a 3D Printer for Breast Cancer Radiation Therapy
Park, Jong Min; Chun, MinSoo; Han, Ji Hye; Kim, Jung-in
2016-01-01
Purpose The aim of this study was to assess the feasibility and advantages of a patient-specific breast bolus made using a 3D printer technique. Methods We used the anthropomorphic female phantom with breast attachments, which volumes are 200, 300, 400, 500 and 650 cc. We simulated the treatment for a right breast patient using parallel opposed tangential fields. Treatment plans were used to investigate the effect of unwanted air gaps under bolus on the dose distribution of the whole breast. The commercial Super-Flex bolus and 3D-printed polylactic acid (PLA) bolus were applied to investigate the skin dose of the breast with the MOSFET measurement. Two boluses of 3 and 5 mm thicknesses were selected. Results There was a good agreement between the dose distribution for a virtual bolus generated by the TPS and PLA bolus. The difference in dose distribution between the virtual bolus and Super-Flex bolus was significant within the bolus and breast due to unwanted air gaps. The average differences between calculated and measured doses in a 200 and 300 cc with PLA bolus were not significant, which were -0.7% and -0.6% for 3mm, and -1.1% and -1.1% for 5 mm, respectively. With the Super-Flex bolus, however, significant dose differences were observed (-5.1% and -3.2% for 3mm, and -6.3% and -4.2% for 5 mm). Conclusion The 3D-printed solid bolus can reduce the uncertainty of the daily setup and help to overcome the dose discrepancy by unwanted air gaps in the breast cancer radiation therapy. PMID:27930717
Asuni, G; Beek, T van; Van Utyven, E; McCowan, P; McCurdy, B.M.C.
2014-08-15
Radical treatment techniques such as stereotactic body radiation therapy (SBRT) are becoming popular and they involve delivery of large doses in fewer fractions. Due to this feature of SBRT, a high-resolution, pre-treatment dose verification method that makes use of a 3D patient representation would be appropriate. Such a technique will provide additional information about dose delivered to the target volume(s) and organs-at-risk (OARs) in the patient volume compared to 2D verification methods. In this work, we investigate an electronic portal imaging device (EPID) based pre-treatment QA method which provides an accurate reconstruction of the 3D-dose distribution in the patient model. Customized patient plans are delivered ‘in air’ and the portal images are collected using the EPID in cine mode. The images are then analysed to determine an estimate of the incident energy fluence. This is then passed to a collapsed-cone convolution dose algorithm which reconstructs a 3D patient dose estimate on the CT imaging dataset. To date, the method has been applied to 5 SBRT patient plans. Reconstructed doses were compared to those calculated by the TPS. Reconstructed mean doses were mostly within 3% of those in the TPS. DVHs of target volumes and OARs compared well. The Chi pass rates using 3%/3mm in the high dose region are greater than 97% in all cases. These initial results demonstrate clinical feasibility and utility of a robust, efficient, effective and convenient pre-treatment QA method using EPID. Research sponsored in part by Varian Medical Systems.
NASA Astrophysics Data System (ADS)
Feret, J. B.; Gastellu-Etchegorry, J. P.; Lefèvre-Fonollosa, M. J.; Proisy, C.; Asner, G. P.
2014-12-01
The accelerating loss of biodiversity is a major environmental trend. Tropical ecosystems are particularly threatened due to climate change, invasive species, farming and natural resources exploitation. Recent advances in remote sensing of biodiversity confirmed the potential of high spatial resolution spectroscopic imagery for species identification and biodiversity mapping. Such information bridges the scale-gap between small-scale, highly detailed field studies and large-scale, low-resolution satellite observations. In order to produce fine-scale resolution maps of canopy alpha-diversity and beta-diversity of the Peruvian Amazonian forest, we designed, applied and validated a method based on spectral variation hypothesis to CAO AToMS (Carnegie Airborne Observatory Airborne Taxonomic Mapping System) images, acquired from 2011 to 2013. There is a need to understand on a quantitative basis the physical processes leading to this spectral variability. This spectral variability mainly depends on canopy chemistry, structure, and sensor's characteristics. 3D radiative transfer modeling provides a powerful framework for the study of the relative influence of each of these factors in dense and complex canopies. We simulated series of spectroscopic images with the 3D radiative model DART, with variability gradients in terms of leaf chemistry, individual tree structure, spatial and spectral resolution, and applied methods for biodiversity mapping. This sensitivity study allowed us to determine the relative influence of these factors on the radiometric signal acquired by different types of sensors. Such study is particularly important to define the domain of validity of our approach, to refine requirements for the instrumental specifications, and to help preparing hyperspectral spatial missions to be launched at the horizon 2015-2025 (EnMAP, PRISMA, HISUI, SHALOM, HYSPIRI, HYPXIM). Simulations in preparation include topographic variations in order to estimate the robustness
Nagata, Yasushi Hiraoka, Masahiro; Mizowaki, Takashi; Narita, Yuichiro; Matsuo, Yukinori; Norihisa, Yoshiki; Onishi, Hiroshi; Shirato, Hiroki
2009-10-01
Purpose: To recognize the current status of stereotactic body radiotherapy (SBRT) in Japan, using a nationwide survey conducted by the Japan 3-D Conformal External Beam Radiotherapy Group. Methods and Materials: The questionnaire was sent by mail to 117 institutions. Ninety-four institutions (80%) responded by the end of November 2005. Fifty-three institutions indicated that they have already started SBRT, and 38 institutions had been reimbursed by insurance. Results: A total of 1111 patients with histologically confirmed lung cancer were treated. Among these patients, 637 had T1N0M0 and 272 had T2N0M0 lung cancer. Metastatic lung cancer was found in 702 and histologically unconfirmed lung tumor in 291 patients. Primary liver cancer was found in 207 and metastatic liver cancer in 76 patients. The most frequent schedule used for primary lung cancer was 48Gy in 4 fractions at 22 institutions (52%), followed by 50Gy in 5 fractions at 11 institutions (26%) and 60Gy in 8 fractions at 4 institutions (10%). The tendency was the same for metastatic lung cancer. The average number of personnel involved in SBRT was 1.8 radiation oncologists, including 1.1 certified radiation oncologists, 2.8 technologists, 0.7 nurses, and 0.6 certified quality assurance personnel and 0.3 physicists. The most frequent amount of time for treatment planning was 61-120min, for quality assurance was 50-60min, and for treatment was 30min. There were 14 (0.6% of all cases) reported Grade 5 complications: 11 cases of radiation pneumonitis, 2 cases of hemoptysis, and 1 case of radiation esophagitis. Conclusion: The current status of SBRT in Japan was surveyed.
Gaberman, Elena; Pinzur, Lena; Levdansky, Lilia; Tsirlin, Maria; Netzer, Nir; Aberman, Zami; Gorodetsky, Raphael
2013-01-01
Exposure to high lethal dose of ionizing radiation results in acute radiation syndrome with deleterious systemic effects to different organs. A primary target is the highly sensitive bone marrow and the hematopoietic system. In the current study C3H/HeN mice were total body irradiated by 7.7 Gy. Twenty four hrs and 5 days after irradiation 2×10(6) cells from different preparations of human derived 3D expanded adherent placental stromal cells (PLX) were injected intramuscularly. Treatment with batches consisting of pure maternal cell preparations (PLX-Mat) increased the survival of the irradiated mice from ∼27% to 68% (P<0.001), while cell preparations with a mixture of maternal and fetal derived cells (PLX-RAD) increased the survival to ∼98% (P<0.0001). The dose modifying factor of this treatment for both 50% and 37% survival (DMF50 and DMF37) was∼1.23. Initiation of the more effective treatment with PLX-RAD injection could be delayed for up to 48 hrs after irradiation with similar effect. A delayed treatment by 72 hrs had lower, but still significantly effect (p<0.05). A faster recovery of the BM and improved reconstitution of all blood cell lineages in the PLX-RAD treated mice during the follow-up explains the increased survival of the cells treated irradiated mice. The number of CD45+/SCA1+ hematopoietic progenitor cells within the fast recovering population of nucleated BM cells in the irradiated mice was also elevated in the PLX-RAD treated mice. Our study suggests that IM treatment with PLX-RAD cells may serve as a highly effective "off the shelf" therapy to treat BM failure following total body exposure to high doses of radiation. The results suggest that similar treatments may be beneficial also for clinical conditions associated with severe BM aplasia and pancytopenia.
Gaberman, Elena; Pinzur, Lena; Levdansky, Lilia; Tsirlin, Maria; Netzer, Nir; Aberman, Zami; Gorodetsky, Raphael
2013-01-01
Exposure to high lethal dose of ionizing radiation results in acute radiation syndrome with deleterious systemic effects to different organs. A primary target is the highly sensitive bone marrow and the hematopoietic system. In the current study C3H/HeN mice were total body irradiated by 7.7 Gy. Twenty four hrs and 5 days after irradiation 2×106 cells from different preparations of human derived 3D expanded adherent placental stromal cells (PLX) were injected intramuscularly. Treatment with batches consisting of pure maternal cell preparations (PLX-Mat) increased the survival of the irradiated mice from ∼27% to 68% (P<0.001), while cell preparations with a mixture of maternal and fetal derived cells (PLX-RAD) increased the survival to ∼98% (P<0.0001). The dose modifying factor of this treatment for both 50% and 37% survival (DMF50 and DMF37) was∼1.23. Initiation of the more effective treatment with PLX-RAD injection could be delayed for up to 48 hrs after irradiation with similar effect. A delayed treatment by 72 hrs had lower, but still significantly effect (p<0.05). A faster recovery of the BM and improved reconstitution of all blood cell lineages in the PLX-RAD treated mice during the follow-up explains the increased survival of the cells treated irradiated mice. The number of CD45+/SCA1+ hematopoietic progenitor cells within the fast recovering population of nucleated BM cells in the irradiated mice was also elevated in the PLX-RAD treated mice. Our study suggests that IM treatment with PLX-RAD cells may serve as a highly effective “off the shelf” therapy to treat BM failure following total body exposure to high doses of radiation. The results suggest that similar treatments may be beneficial also for clinical conditions associated with severe BM aplasia and pancytopenia. PMID:23823334
NASA Astrophysics Data System (ADS)
Ponomarev, Artem; Sundaresan, Alamelu; Kim, Angela; Vazquez, Marcelo E.; Guida, Peter; Kim, Myung-Hee; Cucinotta, Francis A.
A 3D Monte Carlo model of radiation transport in matter is applied to study the effect of heavy ion radiation on human neuronal cells. Central nervous system effects, including cognitive impairment, are suspected from the heavy ion component of galactic cosmic radiation (GCR) during space missions. The model can count, for instance, the number of direct hits from ions, which will have the most affect on the cells. For comparison, the remote hits, which are received through δ-rays from the projectile traversing space outside the volume of the cell, are also simulated and their contribution is estimated. To simulate tissue effects from irradiation, cellular matrices of neuronal cells, which were derived from confocal microscopy, were simulated in our model. To produce this realistic model of the brain tissue, image segmentation was used to identify cells in the images of cells cultures. The segmented cells were inserted pixel by pixel into the modeled physical space, which represents a volume of interacting cells with periodic boundary conditions (PBCs). PBCs were used to extrapolate the model results to the macroscopic tissue structures. Specific spatial patterns for cell apoptosis are expected from GCR, as heavy ions produce concentrated damage along their trajectories. The apoptotic cell patterns were modeled based on the action cross sections for apoptosis, which were estimated from the available experimental data. The cell patterns were characterized with an autocorrelation function, which values are higher for non-random cell patterns, and the values of the autocorrelation function were compared for X rays and Fe ion irradiations. The autocorrelation function indicates the directionality effects present in apoptotic neuronal cells from GCR.
Sci—Thur AM: YIS - 07: Design and production of 3D printed bolus for electron radiation therapy
Su, Shiqin; Moran, Kathryn; Robar, James L.
2014-08-15
This is a proof-of-concept study demonstrating the capacity for modulated electron radiation therapy (MERT) using 3D printed bolus. Previous reports have involved bolus design using an electron pencil beam model and fabrication using a milling machine. In this study, an in-house algorithm is presented that optimizes the dose distribution with regard to dose coverage, conformity and homogeneity within planning target volume (PTV). The algorithm uses calculated result of a commercial electron Monte Carlo dose calculation as input. Distances along ray lines from distal side of 90% isodose to distal surface of PTV are used to estimate the bolus thickness. Inhomogeneities within the calculation volume are accounted for using coefficient of equivalent thickness method. Several regional modulation operators are applied to improve dose coverage and uniformity. The process is iterated (usually twice) until an acceptable MERT plan is realized, and the final bolus is printed using solid polylactic acid. The method is evaluated with regular geometric phantoms, anthropomorphic phantoms and a clinical rhabdomyosarcoma pediatric case. In all cases the dose conformity is improved compared to that with uniform bolus. The printed boluses conform well to the surface of complex anthropomorphic phantoms. For the rhabdomyosarcoma patient, the MERT plan yields a reduction of mean dose by 38.2% in left kidney relative to uniform bolus. MERT using 3D printed bolus appears to be a practical, low cost approach to generating optimized bolus for electron therapy. The method is effective in improving conformity of prescription isodose surface and in sparing immediately adjacent normal tissues.
Ehler, E; Sterling, D; Higgins, P
2015-06-15
Purpose: 3D printed phantoms constructed of multiple tissue approximating materials could be useful in both clinical and research aspects of radiotherapy. This work describes a 3D printed phantom constructed with tissue substitute plastics for both bone and soft tissue; air cavities were included as well. Methods: 3D models of an anonymized nasopharynx patient were generated for air cavities, soft tissues, and bone, which were segmented by Hounsfield Unit (HU) thresholds. HU thresholds were chosen to define air-to-soft tissue boundaries of 0.65 g/cc and soft tissue-to-bone boundaries of 1.18 g/cc based on clinical HU to density tables. After evaluation of several composite plastics, a bone tissue substitute was identified as an acceptable material for typical radiotherapy x-ray energies, composed of iron and PLA plastic. PET plastic was determined to be an acceptable soft tissue substitute. 3D printing was performed on a consumer grade dual extrusion fused deposition model 3D printer. Results: MVCT scans of the 3D printed heterogeneous phantom were acquired. Rigid image registration of the patient and the 3D printed phantom scans was performed. The average physical density of the soft tissue and bone regions was 1.02 ± 0.08 g/cc and 1.39 ± 0.14 g/cc, respectively, for the patient kVCT scan. In the 3D printed phantom MVCT scan, the average density of the soft tissue and bone was 1.01 ± 0.09 g/cc and 1.44 ± 0.12 g/cc, respectively. Conclusion: A patient specific phantom, constructed of heterogeneous tissue substitute materials was constructed by 3D printing. MVCT of the 3D printed phantom showed realistic tissue densities were recreated by the 3D printing materials. Funding provided by intra-department grant by University of Minnesota Department of Radiation Oncology.
Ma, C; Yin, Y
2015-06-15
Purpose: The purpose of this work was to determine the dosimetric benefit to normal tissues by tracking liver tumor dose in four dimensional radiation therapy (4DRT) on ten phases of four dimensional computer tomagraphy(4DCT) images. Methods: Target tracking each phase with the beam aperture for ten liver cancer patients were converted to cumulative plan and compared to the 3D plan with a merged target volume based on 4DCT image in radiation treatment planning system (TPS). The change in normal tissue dose was evaluated in the plan by using the parameters V5, V10, V15, V20,V25, V30, V35 and V40 (volumes receiving 5, 10, 15, 20, 25, 30, 35 and 40Gy, respectively) in the dose-volume histogram for the liver; mean dose for the following structures: liver, left kidney and right kidney; and maximum dose for the following structures: bowel, duodenum, esophagus, stomach and heart. Results: There was significant difference between 4D PTV(average 115.71cm3 )and ITV(169.86 cm3). When the planning objective is 95% volume of PTV covered by the prescription dose, the mean dose for the liver, left kidney and right kidney have an average decrease 23.13%, 49.51%, and 54.38%, respectively. The maximum dose for bowel, duodenum,esophagus, stomach and heart have an average decrease 16.77%, 28.07%, 24.28%, 4.89%, and 4.45%, respectively. Compared to 3D RT, radiation volume for the liver V5, V10, V15, V20, V25, V30, V35 and V40 by using the 4D plans have a significant decrease(P≤0.05). Conclusion: The 4D plan method creates plans that permit better sparing of the normal structures than the commonly used ITV method, which delivers the same dosimetric effects to the target.
Yin, Gang; Wang, Pei; Lang, Jinyi; Tian, Yin; Luo, Yangkun; Fan, Zixuan
2016-01-01
Purpose Intensity modulated radiation therapy (IMRT) compensation based on 3D high-dose-rate (HDR) intracavitary brachytherapy (ICBT) boost technique (ICBT + IMRT) has been used in our hospital for advanced cervix carcinoma patients. The purpose of this study was to compare the dosimetric results of the four different boost techniques (the conventional 2D HDR intracavitary brachytherapy [CICBT], 3D optimized HDR intracavitary brachytherapy [OICBT], and IMRT-alone with the applicator in situ). Material and methods For 30 patients with locally advanced cervical carcinoma, after the completion of external beam radiotherapy (EBRT) for whole pelvic irradiation 45 Gy/25 fractions, five fractions of ICBT + IMRT boost with 6 Gy/fractions for high risk clinical target volume (HRCTV), and 5 Gy/fractions for intermediate risk clinical target volume (IRCTV) were applied. Computed tomography (CT) and magnetic resonance imaging (MRI) scans were acquired using an in situ CT/MRI-compatible applicator. The gross tumor volume (GTV), the high/intermediate-risk clinical target volume (HRCTV/IRCTV), bladder, rectum, and sigmoid were contoured by CT scans. Results For ICBT + IMRT plan, values of D90, D100 of HRCTV, D90, D100, and V100 of IRCTV significantly increased (p < 0.05) in comparison to OICBT and CICBT. The D2cc values for bladder, rectum, and sigmoid were significantly lower than that of CICBT and IMRT alone. In all patients, the mean rectum V60 Gy values generated from ICBT + IMRT and OICBT techniques were very similar but for bladder and sigmoid, the V60 Gy values generated from ICBT + IMRT were higher than that of OICBT. For the ICBT + IMRT plan, the standard deviations (SD) of D90 and D2cc were found to be lower than other three treatment plans. Conclusions The ICBT + IMRT technique not only provides good target coverage but also maintains low doses (D2cc) to the OAR. ICBT + IMRT is an optional technique to boost parametrial region or tumor of large size and irregular shape
Giannoula, Alexia; Cobbold, Richard; Bezerianos, Anastasios
2014-02-01
A modulated acoustic radiation force, produced by two confocal tone-burst ultrasound beams of slightly different frequencies (i.e. 2.0 MHz ± Δf/2, where Δf is the difference frequency), can be used to remotely generate modulated low-frequency (Δf ≤ 500 Hz) shear waves in attenuating media. By appropriately selecting the duration of the two beams, the energy of the generated shear waves can be concentrated around the difference frequency (i.e., Δf ± Δf/2). In this manner, neither their amplitude nor their phase information is distorted by frequency-dependent effects, thereby, enabling a more accurate reconstruction of the viscoelastic properties. Assuming a Voigt viscoelastic model, this paper describes the use of a finite-element-method model to simulate three-dimensional (3-D) shear-wave propagation in viscoelastic media containing a spherical inclusion. Nonlinear propagation is assumed for the two ultrasound beams, so that higher harmonics are developed in the force and shear spectrum. Finally, an inverse reconstruction algorithm is used to extract 3-D maps of the local shear modulus and viscosity from the simulated shear-displacement fields based on the fundamental and second-harmonic component. The quality of the reconstructed maps is evaluated using the contrast between the inclusion and the background and the contrast-to-noise ratio (CNR). It is shown that the shear modulus can be accurately reconstructed based on the fundamental component, such that the observed contrast deviates from the true contrast by a root-mean-square-error (RMSE) of only 0.38 and the CNR is greater than 30 dB. If the second-harmonic component is used, the RMSE becomes 1.54 and the corresponding CNR decreases by approximately 10-15 dB. The reconstructed shear viscosity maps based on the second harmonic are shown to be of higher quality than those based on the fundamental. The effects of noise are also investigated and a fusion operation between the two spectral components is
Parallel 3D Finite Element Particle-in-Cell Simulations with Pic3P
Candel, A.; Kabel, A.; Lee, L.; Li, Z.; Ng, C.; Schussman, G.; Ko, K.; Ben-Zvi, I.; Kewisch, J.; /Brookhaven
2009-06-19
SLAC's Advanced Computations Department (ACD) has developed the parallel 3D Finite Element electromagnetic Particle-In-Cell code Pic3P. Designed for simulations of beam-cavity interactions dominated by space charge effects, Pic3P solves the complete set of Maxwell-Lorentz equations self-consistently and includes space-charge, retardation and boundary effects from first principles. Higher-order Finite Element methods with adaptive refinement on conformal unstructured meshes lead to highly efficient use of computational resources. Massively parallel processing with dynamic load balancing enables large-scale modeling of photoinjectors with unprecedented accuracy, aiding the design and operation of next-generation accelerator facilities. Applications include the LCLS RF gun and the BNL polarized SRF gun.
Zahnreich, Sebastian; Ebersberger, Anne; Karle, Heiko; Kaina, Bernd; Schmidberger, Heinz
2016-11-01
The goal of this study was to determine whether the quantification of radiation biomarkers in peripheral leukocytes of 111 breast cancer patients after adjuvant treatment with different modalities of three-dimensional conformal radiation therapy (3D-CRT) or intensity-modulated radiation therapy (IMRT) revealed any difference in the patients' radiation burden by out-of-field doses and an associated risk of second malignancies. Whole-breast radiation therapy was performed by 3D-CRT using either a hard wedge (n = 32) or a virtual wedge (n = 49) at dose rates of 3 and 6 Gy per min each. Patients receiving additional radiotherapy to lymph nodes were treated by 3D-CRT (n = 21) or IMRT (n = 9). DNA damage was measured as γ-H2AX foci (n = 111) and as unstable chromosomal aberrations (n = 15) in leukocytes drawn 30 min and 24 h after the first radiation fraction, respectively. The individual basal yield and radiation sensitivity ex vivo were assessed in leukocytes obtained before the first treatment. After radiation therapy, the average rate of γ-H2AX foci and chromosomal aberrations per leukocyte were dependent on multiple parameters of irradiation: the treatment volume, the administered equivalent whole-body dose, the number of monitor units and the beam-on time. Different modalities of radiation therapy caused significant variations in the levels of both radiation biomarkers irrespective of the treatment volume and administered dose, and in particular, a twofold higher rate after IMRT compared to 3D-CRT. Any deviation in biomarker response between radiation therapy techniques was directed by a linear dependence on the absolute beam-on time. However, the dispersion of γ-H2AX foci in peripheral leukocytes after radiation therapy correlated very well with the relative distribution of dose in the whole-body volume for each radiation therapy technique. In conclusion, the induction of radiation biomarkers in leukocytes of breast cancer patients by different radiotherapy
Liou, K. N.; Gu, Y.; Leung, L. R.; Lee, W. L.; Fovell, R. G.
2013-01-01
We investigate 3-D mountains/snow effects on solar flux distributions and their impact on surface hydrology over the western United States, specifically the Rocky Mountains and Sierra Nevada. The Weather Research and Forecasting (WRF) model, applied at a 30 km grid resolution, is used in conjunction with a 3-D radiative transfer parameterization covering a time period from 1 November 2007 to 31 May 2008, during which abundant snowfall occurred. A comparison of the 3-D WRF simulation with the observed snow water equivalent (SWE) and precipitation from Snowpack Telemetry (SNOTEL) sites shows reasonable agreement in terms of spatial patterns and daily and seasonal variability, although the simulation generally has a positive precipitation bias. We show that 3-D mountain features have a profound impact on the diurnal and monthly variation of surface radiative and heat fluxes, and on the consequent elevation-dependence of snowmelt and precipitation distributions. In particular, during the winter months, large deviations (3-D-PP, in which PP denotes the plane-parallel approach) of the monthly mean surface solar flux are found in the morning and afternoon hours due to shading effects for elevations below 2.5 km. During spring, positive deviations shift to the earlier morning. Over mountaintops higher than 3 km, positive deviations are found throughout the day, with the largest values of 40–60 W m^{-2} occurring at noon during the snowmelt season of April to May. The monthly SWE deviations averaged over the entire domain show an increase in lower elevations due to reduced snowmelt, which leads to a reduction in cumulative runoff. Over higher elevation areas, positive SWE deviations are found because of increased solar radiation available at the surface. Overall, this study shows that deviations of SWE due to 3-D radiation effects range from an increase of 18% at the lowest elevation range (1.5–2 km) to a decrease of 8% at the highest elevation range (above 3 km
Hybrid MV-kV 3D respiratory motion tracking during radiation therapy with low imaging dose.
Yan, Huagang; Li, Haiyun; Liu, Zhixiang; Nath, Ravinder; Liu, Wu
2012-12-21
A novel real-time adaptive MV-kV imaging framework for image-guided radiation therapy is developed to reduce the thoracic and abdominal tumor targeting uncertainty caused by respiration-induced intrafraction motion with ultra-low patient imaging dose. In our method, continuous stereoscopic MV-kV imaging is used at the beginning of a radiation therapy delivery for several seconds to measure the implanted marker positions. After this stereoscopic imaging period, the kV imager is switched off except for the times when no fiducial marker is detected in the cine-MV images. The 3D time-varying marker positions are estimated by combining the MV 2D projection data and the motion correlations between directional components of marker motion established from the stereoscopic imaging period and updated afterwards; in particular, the most likely position is assumed to be the position on the projection line that has the shortest distance to the first principal component line segment constructed from previous trajectory points. An adaptive windowed auto-regressive prediction is utilized to predict the marker position a short time later (310 ms and 460 ms in this study) to allow for tracking system latency. To demonstrate the feasibility and evaluate the accuracy of the proposed method, computer simulations were performed for both arc and fixed-gantry deliveries using 66 h of retrospective tumor motion data from 42 patients treated for thoracic or abdominal cancers. The simulations reveal that using our hybrid approach, a smaller than 1.2 mm or 1.5 mm root-mean-square tracking error can be achieved at a system latency of 310 ms or 460 ms, respectively. Because the kV imaging is only used for a short period of time in our method, extra patient imaging dose can be reduced by an order of magnitude compared to continuous MV-kV imaging, while the clinical tumor targeting accuracy for thoracic or abdominal cancers is maintained. Furthermore, no additional hardware is required
Hybrid MV-kV 3D respiratory motion tracking during radiation therapy with low imaging dose
NASA Astrophysics Data System (ADS)
Yan, Huagang; Li, Haiyun; Liu, Zhixiang; Nath, Ravinder; Liu, Wu
2012-12-01
A novel real-time adaptive MV-kV imaging framework for image-guided radiation therapy is developed to reduce the thoracic and abdominal tumor targeting uncertainty caused by respiration-induced intrafraction motion with ultra-low patient imaging dose. In our method, continuous stereoscopic MV-kV imaging is used at the beginning of a radiation therapy delivery for several seconds to measure the implanted marker positions. After this stereoscopic imaging period, the kV imager is switched off except for the times when no fiducial marker is detected in the cine-MV images. The 3D time-varying marker positions are estimated by combining the MV 2D projection data and the motion correlations between directional components of marker motion established from the stereoscopic imaging period and updated afterwards; in particular, the most likely position is assumed to be the position on the projection line that has the shortest distance to the first principal component line segment constructed from previous trajectory points. An adaptive windowed auto-regressive prediction is utilized to predict the marker position a short time later (310 ms and 460 ms in this study) to allow for tracking system latency. To demonstrate the feasibility and evaluate the accuracy of the proposed method, computer simulations were performed for both arc and fixed-gantry deliveries using 66 h of retrospective tumor motion data from 42 patients treated for thoracic or abdominal cancers. The simulations reveal that using our hybrid approach, a smaller than 1.2 mm or 1.5 mm root-mean-square tracking error can be achieved at a system latency of 310 ms or 460 ms, respectively. Because the kV imaging is only used for a short period of time in our method, extra patient imaging dose can be reduced by an order of magnitude compared to continuous MV-kV imaging, while the clinical tumor targeting accuracy for thoracic or abdominal cancers is maintained. Furthermore, no additional hardware is required with the
NASA Technical Reports Server (NTRS)
Wen, Guo-Yong; Marshak, Alexander; Cahalan, Robert F.
2004-01-01
Aerosol amount in clear regions of a cloudy atmosphere is a critical parameter in studying the interaction between aerosols and clouds. Since the global cloud cover is about 50%, cloudy scenes are often encountered in any satellite images. Aerosols are more or less transparent, while clouds are extremely reflective in the visible spectrum of solar radiation. The radiative transfer in clear-cloudy condition is highly three- dimensional (3D). This paper focuses on estimating the 3D effects on aerosol optical thickness retrievals using Monte Carlo simulations. An ASTER image of cumulus cloud fields in the biomass burning region in Brazil is simulated in this study. The MODIS products (i-e., cloud optical thickness, particle effective radius, cloud top pressure, surface reflectance, etc.) are used to construct the cloud property and surface reflectance fields. To estimate the cloud 3-D effects, we assume a plane-parallel stratification of aerosol properties in the 60 km x 60 km ASTER image. The simulated solar radiation at the top of the atmosphere is compared with plane-parallel calculations. Furthermore, the 3D cloud radiative effects on aerosol optical thickness retrieval are estimated.
NASA Astrophysics Data System (ADS)
Berger, Thomas; Burmeister, Sönke; Matthiä, Daniel; Przybyla, Bartos; Reitz, Günther; Bilski, Pawel; Hajek, Michael; Sihver, Lembit; Szabo, Julianna; Ambrozova, Iva; Vanhavere, Filip; Gaza, Ramona; Semones, Edward; Yukihara, Eduardo G.; Benton, Eric R.; Uchihori, Yukio; Kodaira, Satoshi; Kitamura, Hisashi; Boehme, Matthias
2017-03-01
The natural radiation environment in Low Earth Orbit (LEO) differs significantly in composition and energy from that found on Earth. The space radiation field consists of high energetic protons and heavier ions from Galactic Cosmic Radiation (GCR), as well as of protons and electrons trapped in the Earth's radiation belts (Van Allen belts). Protons and some heavier particles ejected in occasional Solar Particle Events (SPEs) might in addition contribute to the radiation exposure in LEO. All sources of radiation are modulated by the solar cycle. During solar maximum conditions SPEs occur more frequently with higher particle intensities. Since the radiation exposure in LEO exceeds exposure limits for radiation workers on Earth, the radiation exposure in space has been recognized as a main health concern for humans in space missions from the beginning of the space age on. Monitoring of the radiation environment is therefore an inevitable task in human spaceflight. Since mission profiles are always different and each spacecraft provides different shielding distributions, modifying the radiation environment measurements needs to be done for each mission. The experiments "Dose Distribution within the ISS (DOSIS)" (2009-2011) and "Dose Distribution within the ISS 3D (DOSIS 3D)" (2012-onwards) onboard the Columbus Laboratory of the International Space Station (ISS) use a detector suite consisting of two silicon detector telescopes (DOSimetry TELescope = DOSTEL) and passive radiation detector packages (PDP) and are designed for the determination of the temporal and spatial variation of the radiation environment. With the DOSTEL instruments' changes of the radiation composition and the related exposure levels in dependence of the solar cycle, the altitude of the ISS and the influence of attitude changes of the ISS during Space Shuttle dockings inside the Columbus Laboratory have been monitored. The absorbed doses measured at the end of May 2016 reached up to 286
Reardon, Kelli A; Read, Paul W; Morris, Monica M; Reardon, Michael A; Geesey, Constance; Wijesooriya, Krishni
2013-01-01
Patients undergoing radiation for left-sided breast cancer have increased rates of coronary artery disease. Free-breathing intensity-modulated radiation therapy (FB-IMRT) and 3-dimensional conformal deep inspiratory-breath hold (3D-DIBH) reduce cardiac irradiation. The purpose of this study is to compare the dose to organs at risk in FB-IMRT vs 3D-DIBH for patients with left-sided breast cancer. Ten patients with left-sided breast cancer had 2 computed tomography scans: free breathing and voluntary DIBH. Optimization of the IMRT plan was performed on the free-breathing scan using 6 noncoplanar tangential beams. The 3D-DIBH plan was optimized on the DIBH scan and used standard tangents. Mean volumes of the heart, the left anterior descending coronary artery (LAD), the total lung, and the right breast receiving 5% to 95% (5% increments) of the prescription dose were calculated. Mean volumes of the heart and the LAD were lower (p<0.05) in 3D-DIBH for volumes receiving 5% to 80% of the prescription dose for the heart and 5% for the LAD. Mean dose to the LAD and heart were lower in 3D-DIBH (p≤0.01). Mean volumes of the total lung were lower in FB-IMRT for dose levels 20% to 75% (p<0.05), but mean dose was not different. Mean volumes of the right breast were not different for any dose; however, mean dose was lower for 3D-DIBH (p = 0.04). 3D-DIBH is an alternative approach to FB-IMRT that provides a clinically equivalent treatment for patients with left-sided breast cancer while sparing organs at risk with increased ease of implementation.
Reardon, Kelli A.; Read, Paul W.; Morris, Monica M.; Reardon, Michael A.; Geesey, Constance; Wijesooriya, Krishni
2013-07-01
Patients undergoing radiation for left-sided breast cancer have increased rates of coronary artery disease. Free-breathing intensity-modulated radiation therapy (FB-IMRT) and 3-dimensional conformal deep inspiratory–breath hold (3D-DIBH) reduce cardiac irradiation. The purpose of this study is to compare the dose to organs at risk in FB-IMRT vs 3D-DIBH for patients with left-sided breast cancer. Ten patients with left-sided breast cancer had 2 computed tomography scans: free breathing and voluntary DIBH. Optimization of the IMRT plan was performed on the free-breathing scan using 6 noncoplanar tangential beams. The 3D-DIBH plan was optimized on the DIBH scan and used standard tangents. Mean volumes of the heart, the left anterior descending coronary artery (LAD), the total lung, and the right breast receiving 5% to 95% (5% increments) of the prescription dose were calculated. Mean volumes of the heart and the LAD were lower (p<0.05) in 3D-DIBH for volumes receiving 5% to 80% of the prescription dose for the heart and 5% for the LAD. Mean dose to the LAD and heart were lower in 3D-DIBH (p≤0.01). Mean volumes of the total lung were lower in FB-IMRT for dose levels 20% to 75% (p<0.05), but mean dose was not different. Mean volumes of the right breast were not different for any dose; however, mean dose was lower for 3D-DIBH (p = 0.04). 3D-DIBH is an alternative approach to FB-IMRT that provides a clinically equivalent treatment for patients with left-sided breast cancer while sparing organs at risk with increased ease of implementation.
Li Z.
2011-05-11
A new international-patent-pending (PCT/US2010/52887) detector type, named here as 3D-Trench electrode Si detectors, is proposed in this work. In this new 3D electrode configuration, one or both types of electrodes are etched as trenches deep into the Si (fully penetrating with SOI or supporting wafer, or non-fully penetrating into 50-90% of the thickness), instead of columns as in the conventional ('standard') 3D electrode Si detectors. With trench etched electrodes, the electric field in the new 3D electrode detectors are well defined without low or zero field regions. Except near both surfaces of the detector, the electric field in the concentric type 3D-Trench electrode Si detectors is nearly radial with little or no angular dependence in the circular and hexangular (concentric-type) pixel cell geometries. In the case of parallel plate 3D trench pixels, the field is nearly linear (like the planar 2D electrode detectors), with simple and well-defined boundary conditions. Since each pixel cell in a 3D-Trench electrode detector is isolated from others by highly doped trenches, it is an electrically independent cell. Therefore, an alternative name 'Independent Coaxial Detector Array', or ICDA, is assigned to an array of 3D-Trench electrode detectors. The electric field in the detector can be reduced by a factor of nearly 10 with an optimal 3D-Trench configuration where the junction is on the surrounding trench side. The full depletion voltage in this optimal configuration can be up to 7 times less than that of a conventional 3D detector, and even a factor of two less than that of a 2D planar detector with a thickness the same as the electrode spacing in the 3D-Trench electrode detector. In the case of non-fully penetrating trench electrodes, the processing is true one-sided with backside being unprocessed. The charge loss due to the dead space associated with the trenches is insignificant as compared to that due to radiation-induced trapping in sLHC environment
Pötter, Richard; Haie-Meder, Christine; Van Limbergen, Erik; Barillot, Isabelle; De Brabandere, Marisol; Dimopoulos, Johannes; Dumas, Isabelle; Erickson, Beth; Lang, Stefan; Nulens, An; Petrow, Peter; Rownd, Jason; Kirisits, Christian
2006-01-01
The second part of the GYN GEC ESTRO working group recommendations is focused on 3D dose-volume parameters for brachytherapy of cervical carcinoma. Methods and parameters have been developed and validated from dosimetric, imaging and clinical experience from different institutions (University of Vienna, IGR Paris, University of Leuven). Cumulative dose volume histograms (DVH) are recommended for evaluation of the complex dose heterogeneity. DVH parameters for GTV, HR CTV and IR CTV are the minimum dose delivered to 90 and 100% of the respective volume: D90, D100. The volume, which is enclosed by 150 or 200% of the prescribed dose (V150, V200), is recommended for overall assessment of high dose volumes. V100 is recommended for quality assessment only within a given treatment schedule. For Organs at Risk (OAR) the minimum dose in the most irradiated tissue volume is recommended for reporting: 0.1, 1, and 2 cm3; optional 5 and 10 cm3. Underlying assumptions are: full dose of external beam therapy in the volume of interest, identical location during fractionated brachytherapy, contiguous volumes and contouring of organ walls for >2 cm3. Dose values are reported as absorbed dose and also taking into account different dose rates. The linear-quadratic radiobiological model-equivalent dose (EQD2)-is applied for brachytherapy and is also used for calculating dose from external beam therapy. This formalism allows systematic assessment within one patient, one centre and comparison between different centres with analysis of dose volume relations for GTV, CTV, and OAR. Recommendations for the transition period from traditional to 3D image-based cervix cancer brachytherapy are formulated. Supplementary data (available in the electronic version of this paper) deals with aspects of 3D imaging, radiation physics, radiation biology, dose at reference points and dimensions and volumes for the GTV and CTV (adding to [Haie-Meder C, Pötter R, Van Limbergen E et al. Recommendations from
NASA Technical Reports Server (NTRS)
Patel, Z. S.; Cucinotta, F. A.; Huff, J. L.
2011-01-01
Risk estimation for radiation-induced cancer relies heavily on human epidemiology data obtained from terrestrial irradiation incidents from sources such as medical and occupational exposures as well as from the atomic bomb survivors. No such data exists for exposures to the types and doses of high-LET radiation that will be encountered during space travel; therefore, risk assessment for space radiation requires the use of data derived from cell culture and animal models. The use of experimental models that most accurately replicate the response of human tissues is critical for precision in risk projections. This work compares the genotoxic effects of radiation on normal human epithelial cells grown in standard 2-D monolayer culture compared to 3-D organotypic co-culture conditions. These 3-D organotypic models mimic the morphological features, differentiation markers, and growth characteristics of fully-differentiated normal human tissue and are reproducible using defined components. Cultures were irradiated with 2 Gy low-LET gamma rays or varying doses of high-LET particle radiation and genotoxic damage was measured using a modified cytokinesis block micronucleus assay. Our results revealed a 2-fold increase in residual damage in 2 Gy gamma irradiated cells grown under organotypic culture conditions compared to monolayer culture. Irradiation with high-LET particle radiation gave similar results, while background levels of damage were comparable under both scenarios. These observations may be related to the phenomenon of "multicellular resistance" where cancer cells grown as 3-D spheroids or in vivo exhibit an increased resistance to killing by chemotherapeutic agents compared to the same cells grown in 2-D culture. A variety of factors are likely involved in mediating this process, including increased cell-cell communication, microenvironment influences, and changes in cell cycle kinetics that may promote survival of damaged cells in 3-D culture that would
NASA Technical Reports Server (NTRS)
Barker, Howard W.; Kato, Serji; Wehr, T.
2012-01-01
The main point of this study was to use realistic representations of cloudy atmospheres to assess errors in solar flux estimates associated with 1D radiative transfer models. A scene construction algorithm, developed for the EarthCARE satellite mission, was applied to CloudSat, CALIPSO, and MODIS satellite data thus producing 3D cloudy atmospheres measuring 60 km wide by 13,000 km long at 1 km grid-spacing. Broadband solar fluxes and radiances for each (1 km)2 column where then produced by a Monte Carlo photon transfer model run in both full 3D and independent column approximation mode (i.e., a 1D model).
NASA Astrophysics Data System (ADS)
Gu, Y.; Liou, K.; Leung, L.; Lee, W.; Fovell, R. G.
2013-12-01
Modern climate models have used a plane-parallel (PP) radiative transfer approach in physics parameterizations; however, the potential errors that arise from neglecting three-dimensional (3D) interactions between radiation and mountains/snow on climate simulations have not been studied and quantified. We have developed a surface solar radiation parameterization based on the regression analysis of flux deviations between 3D and conventional PP radiative transfer models, which has been incorporated into the Weather Research and Forecasting (WRF) model to investigate the impact of the spatial and temporal distribution and variation of surface solar fluxes on surface hydrology. Using the Rocky and Sierra-Nevada Mountains in the Western United States as a testbed, the WRF model with the incorporation of the 3D parameterization is applied at a 30 km grid resolution covering a time period from November 1, 2007 to May 31, 2008 during which abundant snowfall occurred. Comparison of the 3D WRF simulation with the observed snow water equivalent (SWE) and precipitation from Snowpack Telemetry (SNOTEL) sites shows reasonable agreement in terms of spatial patterns and daily and seasonal variability, although the simulation generally has a positive precipitation bias. We show that 3D mountain features have a profound impact on the diurnal and monthly variation of surface radiative and heat fluxes and on the consequent elevation-dependence of snowmelt and precipitation distributions. For lower elevations, positive deviations (3D - PP) of the monthly mean surface solar flux are found in the morning and afternoon hours, while negative deviations are shown between 10 am-2 pm during the winter months, leading to reduced diurnal variations. Over the mountain tops above 3 km, positive deviations are found throughout the day, with the largest values of 40 - 60 W/m2 occurring at noon during the snowmelt season of April to May. The monthly SWE deviations averaged over the entire domain
Performance Portability for Unstructured Mesh Physics
Keasler, J A
2012-03-23
ASC legacy software must be ported to emerging hardware architectures. This paper notes that many programming models used by DOE applications are similar, and suggests that constructing a common terminology across these models could reveal a performance portable programming model. The paper then highlights how the LULESH mini-app is used to explore new programming models with outside solution providers. Finally, we suggest better tools to identify parallelism in software, and give suggestions for enhancing the co-design process with vendors.
NASA Astrophysics Data System (ADS)
Oldham, Mark
2015-01-01
Radiochromic materials exhibit a colour change when exposed to ionising radiation. Radiochromic film has been used for clinical dosimetry for many years and increasingly so recently, as films of higher sensitivities have become available. The two principle advantages of radiochromic dosimetry include greater tissue equivalence (radiologically) and the lack of requirement for development of the colour change. In a radiochromic material, the colour change arises direct from ionising interactions affecting dye molecules, without requiring any latent chemical, optical or thermal development, with important implications for increased accuracy and convenience. It is only relatively recently however, that 3D radiochromic dosimetry has become possible. In this article we review recent developments and the current state-of-the-art of 3D radiochromic dosimetry, and the potential for a more comprehensive solution for the verification of complex radiation therapy treatments, and 3D dose measurement in general.
NASA Astrophysics Data System (ADS)
Wagner, J. E.; Arola, A.; Blumthaler, M.; Fitzka, M.; Kift, R.; Kreuter, A.; Rieder, H. E.; Simic, S.; Webb, A.; Weihs, P.
2009-04-01
Since the discovery of anthropogenic ozone depletion more than 30 year ago, the scientific community has shown an increasing interest in UV-B radiation. Nowadays, ground-based high quality measurements of spectrally resolved UV-radiation are available. On the other hand, 1-D- and 3-D models have been developed, that describe the radiative transfer through the atmosphere physically very accurately. Another approach for determining the UV-irradiance at the surface of the earth is the use of satellite-based reflectance measurements as input for retrieval algorithms. At the moment, the research focuses on the impact of clouds on UV-radiation, but the impact of mountains on UV-radiation, especially in combination with high surface albedo due to snowcover, is also very strong and detailed comparisons between measurements and modelling are lacking. Therefore, three measurement campaigns had been conducted in alpine areas of Austria (Innsbruck and Hoher Sonnblick). The goal was to investigate the impact of alpine terrain in combination with snowcover on spectral UV-irradiance and actinic flux. This contribution uses the ground-based UV-irradiance measurements to evaluate three different UV-irradiance calculation methods. Results from three different calculation methods (satellite retrieval, 1-D- and 3-D radiative transfer model) for UV radiation in terms of UV-Index, erythemally weighted daily doses and spectrally resolved UV-Irradiance at 305, 310, 324 and 380nm are presented and compared with ground-based high quality measurements. The real case study is performed in very inhomogenous terrain under clear sky conditions. The values of the different methods are not only compared for the measurements sites, but additionally the impact of altitude is investigated. So far it seems, that 1-D simulations show the best agreement (±10%) with the measurements whereas the 3-D model simulations and satellite retrieved values differ much more. Satellite retrieved values
Barker, H W; Kato, S; Wehr, T
This study used realistic representations of cloudy atmospheres to assess errors in solar flux estimates associated with 1D radiative transfer models. A scene construction algorithm, developed for the EarthCARE mission, was applied to CloudSat, CALIPSO and MODIS satellite data thus producing 3D cloudy atmospheres measuring 61 km wide by 14,000 km long at 1 km grid-spacing. Broadband solar fluxes and radiances were then computed by a Monte Carlo photon transfer model run in both full 3D and 1D independent column approximation modes. Results were averaged into 1,303 (50 km)(2) domains. For domains with total cloud fractions Ac < 0.7 top-of-atmosphere (TOA) albedos tend to be largest for 3D transfer with differences increasing with solar zenith angle. Differences are largest for Ac > 0.7 and characterized by small bias yet large random errors. Regardless of Ac , differences between 3D and 1D transfer rarely exceed ±30 W m(-2) for net TOA and surface fluxes and ±10 W m(-2) for atmospheric absorption. Horizontal fluxes through domain sides depend on Ac with ∼20% of cases exceeding ±30 W m(-2); the largest values occur for Ac > 0.7. Conversely, heating rate differences rarely exceed ±20%. As a cursory test of TOA radiative closure, fluxes produced by the 3D model were averaged up to (20 km)(2) and compared to values measured by CERES. While relatively little attention was paid to optical properties of ice crystals and surfaces, and aerosols were neglected entirely, ∼30% of the differences between 3D model estimates and measurements fall within ±10 W m(-2); this is the target agreement set for EarthCARE. This, coupled with the aforementioned comparison between 3D and 1D transfer, leads to the recommendation that EarthCARE employ a 3D transport model when attempting TOA radiative closure.
Wortel, Ruud C.; Incrocci, Luca; Pos, Floris J.; Lebesque, Joos V.; Witte, Marnix G.; Heide, Uulke A. van der; Herk, Marcel van; Heemsbergen, Wilma D.
2015-03-15
Purpose: Image-guided intensity modulated radiation therapy (IG-IMRT) allows significant dose reductions to organs at risk in prostate cancer patients. However, clinical data identifying the benefits of IG-IMRT in daily practice are scarce. The purpose of this study was to compare dose distributions to organs at risk and acute gastrointestinal (GI) and genitourinary (GU) toxicity levels of patients treated to 78 Gy with either IG-IMRT or 3D-CRT. Methods and Materials: Patients treated with 3D-CRT (n=215) and IG-IMRT (n=260) receiving 78 Gy in 39 fractions within 2 randomized trials were selected. Dose surface histograms of anorectum, anal canal, and bladder were calculated. Identical toxicity questionnaires were distributed at baseline, prior to fraction 20 and 30 and at 90 days after treatment. Radiation Therapy Oncology Group (RTOG) grade ≥1, ≥2, and ≥3 endpoints were derived directly from questionnaires. Univariate and multivariate binary logistic regression analyses were applied. Results: The median volumes receiving 5 to 75 Gy were significantly lower (all P<.001) with IG-IMRT for anorectum, anal canal, and bladder. The mean dose to the anorectum was 34.4 Gy versus 47.3 Gy (P<.001), 23.6 Gy versus 44.6 Gy for the anal canal (P<.001), and 33.1 Gy versus 43.2 Gy for the bladder (P<.001). Significantly lower grade ≥2 toxicity was observed for proctitis, stool frequency ≥6/day, and urinary frequency ≥12/day. IG-IMRT resulted in significantly lower overall RTOG grade ≥2 GI toxicity (29% vs 49%, respectively, P=.002) and overall GU grade ≥2 toxicity (38% vs 48%, respectively, P=.009). Conclusions: A clinically meaningful reduction in dose to organs at risk and acute toxicity levels was observed in IG-IMRT patients, as a result of improved technique and tighter margins. Therefore reduced late toxicity levels can be expected as well; additional research is needed to quantify such reductions.
Ma, M; Rouabhi, O; Flynn, R; Xia, J; Bayouth, J
2014-06-01
Purpose: To evaluate the dosimetric difference between 3D and 4Dweighted dose calculation using patient specific respiratory trace and deformable image registration for stereotactic body radiation therapy in lung tumors. Methods: Two dose calculation techniques, 3D and 4D-weighed dose calculation, were used for dosimetric comparison for 9 lung cancer patients. The magnitude of the tumor motion varied from 3 mm to 23 mm. Breath-hold exhale CT was used for 3D dose calculation with ITV generated from the motion observed from 4D-CT. For 4D-weighted calculation, dose of each binned CT image from the ten breathing amplitudes was first recomputed using the same planning parameters as those used in the 3D calculation. The dose distribution of each binned CT was mapped to the breath-hold CT using deformable image registration. The 4D-weighted dose was computed by summing the deformed doses with the temporal probabilities calculated from their corresponding respiratory traces. Dosimetric evaluation criteria includes lung V20, mean lung dose, and mean tumor dose. Results: Comparing with 3D calculation, lung V20, mean lung dose, and mean tumor dose using 4D-weighted dose calculation were changed by −0.67% ± 2.13%, −4.11% ± 6.94% (−0.36 Gy ± 0.87 Gy), −1.16% ± 1.36%(−0.73 Gy ± 0.85 Gy) accordingly. Conclusion: This work demonstrates that conventional 3D dose calculation method may overestimate the lung V20, MLD, and MTD. The absolute difference between 3D and 4D-weighted dose calculation in lung tumor may not be clinically significant. This research is supported by Siemens Medical Solutions USA, Inc and Iowa Center for Research By Undergraduates.
Detecting Radiation-Induced Injury Using Rapid 3D Variogram Analysis of CT Images of Rat Lungs
Jacob, Rick E.; Murphy, Mark K.; Creim, Jeffrey A.; Carson, James P.
2013-10-01
A new heterogeneity analysis approach to discern radiation-induced lung damage was tested on CT images of irradiated rats. The method, combining octree decomposition with variogram analysis, demonstrated a significant correlation with radiation exposure levels, whereas conventional measurements and pulmonary function tests did not. The results suggest the new approach may be highly sensitive for assessing even subtle radiation-induced changes
Poppe, Matthew M.; Narra, Venkat; Yue, Ning J.; Zhou Jinghao; Nelson, Carl; Jabbour, Salma K.
2011-01-01
We assessed dosimetric differences in pancreatic cancer radiotherapy via helical intensity-modulated radiotherapy (HIMRT), linac-based IMRT, and 3D-conformal radiation therapy (3D-CRT) with regard to successful plan acceptance and dose to critical organs. Dosimetric analysis was performed in 16 pancreatic cases that were planned to 54 Gy; both post-pancreaticoduodenectomy (n = 8) and unresected (n = 8) cases were compared. Without volume modification, plans met constraints 75% of the time with HIMRT and IMRT and 13% with 3D-CRT. There was no statistically significantly improvement with HIMRT over conventional IMRT in reducing liver V35, stomach V45, or bowel V45. HIMRT offers improved planning target volume (PTV) dose homogeneity compared with IMRT, averaging a lower maximum dose and higher volume receiving the prescription dose (D100). HIMRT showed an increased mean dose over IMRT to bowel and liver. Both HIMRT and IMRT offer a statistically significant improvement over 3D-CRT in lowering dose to liver, stomach, and bowel. The results were similar for both unresected and resected patients. In pancreatic cancer, HIMRT offers improved dose homogeneity over conventional IMRT and several significant benefits to 3D-CRT. Factors to consider before incorporating IMRT into pancreatic cancer therapy are respiratory motion, dose inhomogeneity, and mean dose.
Lin, Yu-Fen; Nagasawa, Hatsumi; Peng, Yuanlin; Chuang, Eric Y; Bedford, Joel S
2009-06-01
It has been argued that the cell-cell and cell-matrix interaction networks in normal tissues are disrupted by radiation and that this largely controls many of the most important cellular radiation responses. This has led to the broader assertion that individual cells in normal tissue or a 3D normal-tissue-like culture will respond to radiation very differently than the same cells in a 2D monolayer culture. While many studies have shown that, in some cases, cell-cell contact in spheroids of transformed or tumor cell lines can alter radiation responses relative to those for the same cells in monolayer cultures, a question remains regarding the possible effect of the above-mentioned disruption of signaling networks that operate more specifically for cells in normal tissues or in a 3D tissue-like context. To test the generality of this notion, we used human MCF-10A cells, an immortalized mammary epithelial cell line that produces acinar structures in culture with many properties of human mammary ducts. We compared the dose responses for these cells in the 2D monolayer and in 3D ductal or acinar structures. The responses examined were reproductive cell death, induction of chromosomal aberrations, and the levels of gamma-H2AX foci in cells after single acute gamma-ray doses and immediately after 20 h of irradiation at a dose rate of 0.0017 Gy/min. We found no significant differences in the dose responses of these cells in 2D or 3D growth conditions. While this does not mean that such differences cannot occur in other situations, it does mean that they do not generally or necessarily occur.
NASA Astrophysics Data System (ADS)
Jakub, Fabian; Mayer, Bernhard
2016-04-01
The recently developed 3-D TenStream radiative transfer solver was integrated into the University of California, Los Angeles large-eddy simulation (UCLA-LES) cloud-resolving model. This work documents the overall performance of the TenStream solver as well as the technical challenges of migrating from 1-D schemes to 3-D schemes. In particular the employed Monte Carlo spectral integration needed to be reexamined in conjunction with 3-D radiative transfer. Despite the fact that the spectral sampling has to be performed uniformly over the whole domain, we find that the Monte Carlo spectral integration remains valid. To understand the performance characteristics of the coupled TenStream solver, we conducted weak as well as strong-scaling experiments. In this context, we investigate two matrix preconditioner: geometric algebraic multigrid preconditioning (GAMG) and block Jacobi incomplete LU (ILU) factorization and find that algebraic multigrid preconditioning performs well for complex scenes and highly parallelized simulations. The TenStream solver is tested for up to 4096 cores and shows a parallel scaling efficiency of 80-90 % on various supercomputers. Compared to the widely employed 1-D delta-Eddington two-stream solver, the computational costs for the radiative transfer solver alone increases by a factor of 5-10.
NASA Astrophysics Data System (ADS)
Shprits, Y.; Subbotin, D.; Ni, B.; Daae, M.; Kondrashov, D. A.; Hartinger, M.; Kim, K.; Orlova, K.; Nagai, T.; Friedel, R. H.; Chen, Y.
2010-12-01
In this study we present simulations of the inner and outer radiation belts using the Versatile Electron Radiation Belt (VERB) accounting for radial, pitch-angle, energy, and mixed diffusion. Qusi-linear diffusion coefficients are computed using the Full Diffusion Code (FDC) due to day-side and night-side chorus waves, magneto-sonic waves, phasmaspheric hiss waves, EMIC and hiss waves in the regions of plumes, lightning generated whistlers and anthropogenic whistlers. Sensitivity simulations show that the knowledge of wave spectral properties and spacial distribution of waves is crucially important for reproducing long term observations. The 3D VERB code simulations are compared to 3D reanalysis of the radiation belt fluxes obtained by blending the predictive model with observations from LANL GEO, CRRES, Akebono, and GPS. We also discuss the initial results of coupled RCM-VERB simulations. Finally, we present a statistical analysis of radiation belt phase space density obtained from reanalysis to explore sudden drop outs of the radiation belt fluxes and location of peaks in phase space density. The application of the developed tools to future measurements on board RBSP is discussed.
2D-3D hybrid stabilized finite element method for tsunami runup simulations
NASA Astrophysics Data System (ADS)
Takase, S.; Moriguchi, S.; Terada, K.; Kato, J.; Kyoya, T.; Kashiyama, K.; Kotani, T.
2016-09-01
This paper presents a two-dimensional (2D)-three-dimensional (3D) hybrid stabilized finite element method that enables us to predict a propagation process of tsunami generated in a hypocentral region, which ranges from offshore propagation to runup to urban areas, with high accuracy and relatively low computational costs. To be more specific, the 2D shallow water equation is employed to simulate the propagation of offshore waves, while the 3D Navier-Stokes equation is employed for the runup in urban areas. The stabilized finite element method is utilized for numerical simulations for both of the 2D and 3D domains that are independently discretized with unstructured meshes. The multi-point constraint and transmission methods are applied to satisfy the continuity of flow velocities and pressures at the interface between the resulting 2D and 3D meshes, since neither their spatial dimensions nor node arrangements are consistent. Numerical examples are presented to demonstrate the performance of the proposed hybrid method to simulate tsunami behavior, including offshore propagation and runup to urban areas, with substantially lower computation costs in comparison with full 3D computations.
Using 1D theory to understand 3D stagnation of a wire-array Z pinch in the absence of radiation
NASA Astrophysics Data System (ADS)
Yu, Edmund
2015-11-01
Many high-energy-density systems implode towards the axis of symmetry, where it collides on itself, forming a hot plasma. However, experiments show these imploding plasmas develop three-dimensional (3D) structures. As a result, the plasma cannot completely dissipate its kinetic energy at stagnation, instead retaining significant 3D flow. A useful tool for understanding the effects of this residual flow is 3D simulation, but the amount and complexity of information can be daunting. To address this problem, we explore the connection between 3D simulation and one-dimensional (1D) theory. Such a connection, if it exists, is mutually beneficial: 1D theory can provide a clear picture of the underlying dynamics of 3D stagnation. On the other hand, deviations between theory and simulation suggest how 1D theory must be modified to account for 3D effects. In this work, we focus on a 3D, magnetohydrodynamic simulation of a compact wire-array Z pinch. To provide a simpler background against which to test our ideas, we artificially turn off radiation during the stagnation phase. Examination of the initial accumulation of mass on axis reveals oblique collision between jets, shock accretion, and vortex formation. Despite evidence for shock-dominated stagnation, a 1D shockless stagnation solution is more appropriate for describing the global dynamics, in that it reproduces the increase of on-axis density with time. However, the 1D solution must be modified to account for 3D effects: the flows suggest enhanced thermal transport as well as centrifugal force. Upon reaching peak compression, the stagnation transitions to a second phase, in which the high-pressure core on axis expands outward into the remaining imploding plasma. During this phase, a 1D shock solution describes the growth of the shock accretion region, as well as the decrease of on-axis density with time. However, the effect of 3D flows is still present: the on-axis temperature does not cool during expansion, which
2013-09-30
vector Monte Carlo code to calculate what is known as SOES (Spatial Offset Elastic Scattering ). We have used our method to calculate the SOES signal... scattering properties, such as different single scattering albedo, different phase function and different phase matrix. Our new 3D vector Monte Carlo ...feature about the asymptotic light field is that it depends profoundly on both the single scattering albedo as well as the phase function of the medium
Jenkins, C; Xing, L
2015-06-15
Purpose The rapid proliferation of affordable 3D printing techniques has enabled the custom fabrication of items ranging from paper weights to medical implants. This study investigates the feasibility of utilizing the technology for developing novel phantoms for use in radiation therapy quality assurance (QA) procedures. Methods A phantom for measuring the geometric parameters of linear accelerator (LINAC) on-board imaging (OBI) systems was designed using SolidWorks. The design was transferred to a 3D printer and fabricated using a fused deposition modeling (FDM) technique. Fiducials were embedded in the phantom by placing 1.6 mm diameter steel balls in predefined holes and securing them with silicone. Several MV and kV images of the phantom were collected and the visibility and geometric accuracy were evaluated. A second phantom, for use in the experimental evaluation of a high dose rate (HDR) brachytherapy dosimeter, was designed to secure several applicator needles in water. The applicator was fabricated in the same 3D printer and used for experiments. Results The general accuracy of printed parts was determined to be 0.1 mm. The cost of materials for the imaging and QA phantoms were $22 and $5 respectively. Both the plastic structure and fiducial markers of the imaging phantom were visible in MV and kV images. Fiducial marker locations were determined to be within 1mm of desired locations, with the discrepancy being attributed to the fiducial attachment process. The HDR phantom secured the applicators within 0.5 mm of the desired locations. Conclusion 3D printing offers an inexpensive method for fabricating custom phantoms for use in radiation therapy quality assurance. While the geometric accuracy of such parts is limited compared to more expensive methods, the phantoms are still highly functional and provide a unique opportunity for rapid fabrication of custom phantoms for use in radiation therapy QA and research.
2010-01-01
RaDyO platforms, the R/ P FLoating Instrument Platform (FLIP) and the R/V Kilo Moana (KM), are usually different. Among other important results, it is... Krajewski “A three-dimensional atmospheric radiative transfer model based on the discrete ordinates method”, Atmos. Res. 33, 283-308, (1994), 4. J. L...Haferman, T. F. Smith, and W. F. Krajewski , “A Multi-dimensional Discrete Ordinates Method for Polarized Radiative Transfer, Part I: Validation for
Optical CT scanner for in-air readout of gels for external radiation beam 3D dosimetry.
Ramm, Daniel; Rutten, Thomas P; Shepherd, Justin; Bezak, Eva
2012-06-21
Optical CT scanners for a 3D readout of externally irradiated radiosensitive hydrogels currently require the use of a refractive index (RI) matching liquid bath to obtain suitable optical ray paths through the gel sample to the detector. The requirement for a RI matching liquid bath has been negated by the design of a plastic cylindrical gel container that provides parallel beam geometry through the gel sample for the majority of the projection. The design method can be used for various hydrogels. Preliminary test results for the prototype laser beam scanner with ferrous xylenol-orange gel show geometric distortion of 0.2 mm maximum, spatial resolution limited to beam spot size of about 0.4 mm and 0.8% noise (1 SD) for a uniform irradiation. Reconstruction of a star pattern irradiated through the cylinder walls demonstrates the suitability for external beam applications. The extremely simple and cost-effective construction of this optical CT scanner, together with the simplicity of scanning gel samples without RI matching fluid increases the feasibility of using 3D gel dosimetry for clinical external beam dose verifications.
Comparison of 1D stagnation solutions to 3D wire-array Z pinch simulations in absence of radiation
NASA Astrophysics Data System (ADS)
Yu, Edmund; Velikovich, Alexander; Maron, Yitzhak
2013-10-01
In the idealized picture of a Z pinch, a cylindrically symmetric plasma shell implodes towards axis. In this 1D (radial) picture, the resulting stagnation is very efficient: all the kinetic energy of the shell converts to internal energy, as for instance in the Noh shock solution or the homogeneous stagnation flow. If we generalize the problem to 2D by deforming the shell from perfectly circular to oblate, the resulting stagnation will not be as efficient. As in the Hiemenz flow, in which a jet of fluid strikes a rigid flat boundary and squirts out to the sides, the more complicated flows allowed in 2D allow flow kinetic energy to redirect rather than stagnate. With this picture in mind, we might expect the stagnation of a wire-array Z pinch, which in actuality forms a highly distorted 3D imploding plasma, to dissipate its kinetic energy inefficiently due to the lack of symmetry, and be indescribable by means of the idealized 1D stagnation solutions. On the other hand, one might expect that if the imploding plasma is sufficiently messy, the non-uniformities might ``wash out,'' allowing a quasi-1D description of the averaged quantities of plasma. In this work we explore this idea, comparing predictions of 1D stagnation solutions with 3D simulation. Sandia is a multiprogram laboratory operated by Sandia Corporation, a Lockheed Martin Company, for the United States Department of Energy under contract DE-AC0 4-94AL85000.
Vitzthum, L; Ehler, E; Sterling, D; Reynolds, T; Higgins, P; Dusenbery, K
2015-06-15
Purpose: To evaluate a novel 3D printed bolus fabricated from a copper-plastic composite as a thin flexible, custom fitting device that can replicate doses achieved with conventional bolus techniques. Methods: Two models of bolus were created on a 3D printer using a composite copper-PLA/PHA. Firstly, boluses were constructed at thicknesses of 0.4, 0.6 and 0.8 mm. Relative dose measurements were performed under the bolus with an Attix Chamber as well as with radiochromic film. Results were compared to superficial Attix Chamber measurements in a water equivalent material to determine the dosimetric water equivalence of the copper-PLA/PHA plastic. Secondly, CT images of a RANDO phantom were used to create a custom fitting bolus across the anterolateral scalp. Surface dose with the bolus placed on the RANDO phantom was measured with radiochromic film at tangential angles with 6, 10, 10 flattening filter free (FFF) and 18 MV photon beams. Results: Mean surface doses for 6, 10, 10FFF and 18 MV were measured as a percent of Dmax for the flat bolus devices of each thickness. The 0.4 mm thickness bolus was determined to be near equivalent to 2.5 mm depth in water for all four energies. Surface doses ranged from 59–63% without bolus and 85–90% with the custom 0.4 mm copper-plastic bolus relative to the prescribed dose for an oblique tangential beam arrangement on the RANDO phantom. Conclusion: Sub-millimeter thickness, 3D printed composite copper-PLA/PHA bolus can provide a build-up effect equivalent to conventional bolus. At this thickness, the 3D printed bolus allows a level of flexure that may provide more patient comfort than current 3D printing materials used in bolus fabrication while still retaining the CT based custom patient shape. Funding provided by an intra-department grant of the University of Minnesota Department of Radiation Oncology.
Detecting Radiation-Induced Injury Using Rapid 3D Variogram Analysis of CT Images of Rat Lungs
Jacob, Richard E.; Murphy, Mark K.; Creim, Jeffrey A.; Carson, James P.
2014-01-01
Rationale and Objectives To investigate the ability of variogram analysis of octree-decomposed CT images and volume change maps to detect radiation-induced damage in rat lungs. Materials and Methods The lungs of female Sprague-Dawley rats were exposed to one of five absorbed doses (0, 6, 9, 12, or 15 Gy) of gamma radiation from a Co-60 source. At 6 months post-exposure, pulmonary function tests were performed and 4DCT images were acquired using a respiratory-gated microCT scanner. Volume change maps were then calculated from the 4DCT images. Octree decomposition was performed on CT images and volume change maps, and variogram analysis was applied to the decomposed images. Correlations of measured parameters with dose were evaluated. Results The effects of irradiation were not detectable from measured parameters, indicating only mild lung damage. Additionally, there were no significant correlations of pulmonary function results or CT densitometry with radiation dose. However, the variogram analysis did detect a significant correlation with dose in both the CT images (r=−0.57, p=0.003) and the volume change maps (r=−0.53, p=0.008). Conclusion This is the first study to utilize variogram analysis of lung images to assess pulmonary damage in a model of radiation injury. Results show that this approach is more sensitive to detecting radiation damage than conventional measures such as pulmonary function tests or CT densitometry. PMID:24029058
NASA Astrophysics Data System (ADS)
Debebe, Senait A.; Franquiz, Juan; McGoron, Anthony J.
2015-03-01
Selective Internal Radiation Therapy (SIRT) is a common way to treat liver cancer that cannot be treated surgically. SIRT involves administration of Yttrium - 90 (90Y) microspheres via the hepatic artery after a diagnostic procedure using 99mTechnetium (Tc)-macroaggregated albumin (MAA) to detect extrahepatic shunting to the lung or the gastrointestinal tract. Accurate quantification of radionuclide administered to patients and radiation dose absorbed by different organs is of importance in SIRT. Accurate dosimetry for SIRT allows optimization of dose delivery to the target tumor and may allow for the ability to assess the efficacy of the treatment. In this study, we proposed a method that can efficiently estimate radiation absorbed dose from 90Y bremsstrahlung SPECT/CT images of liver and the surrounding organs. Bremsstrahlung radiation from 90Y was simulated using the Compton window of 99mTc (78keV at 57%). 99mTc images acquired at the photopeak energy window were used as a standard to examine the accuracy of dosimetry prediction by the simulated bremsstrahlung images. A Liqui-Phil abdominal phantom with liver, stomach and two tumor inserts was imaged using a Philips SPECT/CT scanner. The Dose Point Kernel convolution method was used to find the radiation absorbed dose at a voxel level for a three dimensional dose distribution. This method will allow for a complete estimate of the distribution of radiation absorbed dose by tumors, liver, stomach and other surrounding organs at the voxel level. The method provides a quantitative predictive method for SIRT treatment outcome and administered dose response for patients who undergo the treatment.
Camus, Victoria L; Stewart, Grant; Nailon, William H; McLaren, Duncan B; Campbell, Colin J
2016-08-15
Multicellular tumour spheroids (MTS) are three-dimensional cell cultures that possess their own microenvironments and provide a more meaningful model of tumour biology than monolayer cultures. As a result, MTS are becoming increasingly used as tumor models when measuring the efficiency of therapies. Monitoring the viability of live MTS is complicated by their 3D nature and conventional approaches such as fluorescence often require fixation and sectioning. In this paper we detail the use of Surface Enhanced Raman Spectroscopy (SERS) to measure the viability of MTS grown from prostate cancer (PC3) cells. Our results show that we can monitor loss of viability by measuring pH and redox potential in MTS and furthermore we demonstrate that SERS can be used to measure the effects of fractionation of a dose of radiotherapy in a way that has potential to inform treatment planning.
Pannala, S; D'Azevedo, E; Zacharia, T
2002-02-26
The goal of the radiation modeling effort was to develop and implement a radiation algorithm that is fast and accurate for the underhood environment. As part of this CRADA, a net-radiation model was chosen to simulate radiative heat transfer in an underhood of a car. The assumptions (diffuse-gray and uniform radiative properties in each element) reduce the problem tremendously and all the view factors for radiation thermal calculations can be calculated once and for all at the beginning of the simulation. The cost for online integration of heat exchanges due to radiation is found to be less than 15% of the baseline CHAD code and thus very manageable. The off-line view factor calculation is constructed to be very modular and has been completely integrated to read CHAD grid files and the output from this code can be read into the latest version of CHAD. Further integration has to be performed to accomplish the same with STAR-CD. The main outcome of this effort is to obtain a highly scalable and portable simulation capability to model view factors for underhood environment (for e.g. a view factor calculation which took 14 hours on a single processor only took 14 minutes on 64 processors). The code has also been validated using a simple test case where analytical solutions are available. This simulation capability gives underhood designers in the automotive companies the ability to account for thermal radiation - which usually is critical in the underhood environment and also turns out to be one of the most computationally expensive components of underhood simulations. This report starts off with the original work plan as elucidated in the proposal in section B. This is followed by Technical work plan to accomplish the goals of the project in section C. In section D, background to the current work is provided with references to the previous efforts this project leverages on. The results are discussed in section 1E. This report ends with conclusions and future scope of
Hayes, J C; Norman, M
1999-10-28
This report details an investigation into the efficacy of two approaches to solving the radiation diffusion equation within a radiation hydrodynamic simulation. Because leading-edge scientific computing platforms have evolved from large single-node vector processors to parallel aggregates containing tens to thousands of individual CPU's, the ability of an algorithm to maintain high compute efficiency when distributed over a large array of nodes is critically important. The viability of an algorithm thus hinges upon the tripartite question of numerical accuracy, total time to solution, and parallel efficiency.
NASA Astrophysics Data System (ADS)
Clementel, N.; Madura, T. I.; Kruip, C. J. H.; Paardekooper, J.-P.; Gull, T. R.
2015-03-01
The highly eccentric binary system Eta Carinae (η Car) shows numerous time-variable emission and absorption features. These observational signatures are the result of interactions between the complex three-dimensional (3D) wind-wind collision regions and photoionization by the luminous stars. Specifically, helium presents several interesting spectral features that provide important clues on the geometry and physical proprieties of the system and the individual stars. We use the SIMPLEX algorithm to post-process 3D smoothed particle hydrodynamics simulation output of the interacting winds in η Car in order to obtain the fractions of ionized helium assuming three different primary star (ηA) mass-loss rates. The resultant ionization maps constrain the regions where helium is singly- and doubly-ionized. We find that reducing ηA's mass-loss rate (dot{M}_{η A}) increases the volume of He+. Lowering dot{M}_{η A} produces large variations in the volume of He+ in the pre-shock ηA wind on the periastron side of the system. Our results show that binary orientations in which apastron is on our side of the system are more consistent with available observations. We suggest that small variations in dot{M}_{η A} might explain the observed increase in He I absorption in recent decades, although numerous questions regarding this scenario remain open. We also propose that the absence of broad He I lines in the spectra of η Car between its 1890's eruption and ˜1944 might be explained by ηB's He0+-ionizing photons not being able to penetrate the wind-wind interaction region, due to a higher dot{M}_{η A} at that time (by a factor ≳2, compared to the present value).
Boley, A. C.; Morris, M. A.; Desch, S. J.
2013-10-20
A fundamental, unsolved problem in solar system formation is explaining the melting and crystallization of chondrules found in chondritic meteorites. Theoretical models of chondrule melting in nebular shocks have been shown to be consistent with many aspects of thermal histories inferred for chondrules from laboratory experiments; but, the mechanism driving these shocks is unknown. Planetesimals and planetary embryos on eccentric orbits can produce bow shocks as they move supersonically through the disk gas, and are one possible source of chondrule-melting shocks. We investigate chondrule formation in bow shocks around planetoids through three-dimensional radiation hydrodynamics simulations. A new radiation transport algorithm that combines elements of flux-limited diffusion and Monte Carlo methods is used to capture the complexity of radiative transport around bow shocks. An equation of state that includes the rotational, vibrational, and dissociation modes of H{sub 2} is also used. Solids are followed directly in the simulations and their thermal histories are recorded. Adiabatic expansion creates rapid cooling of the gas, and tail shocks behind the embryo can cause secondary heating events. Radiative transport is efficient, and bow shocks around planetoids can have luminosities ∼few× 10{sup –8} L{sub ☉}. While barred and radial chondrule textures could be produced in the radiative shocks explored here, porphyritic chondrules may only be possible in the adiabatic limit. We present a series of predicted cooling curves that merit investigation in laboratory experiments to determine whether the solids produced by bow shocks are represented in the meteoritic record by chondrules or other solids.
Li, Q; Juang, T; Bache, S; Chang, S; Oldham, M
2014-06-15
Purpose: The feasibility of MRT has recently been demonstrated utilizing a new technology of Carbon-Nano-Tube(CNT) field emission x-ray sources.This approach can deliver very high dose(10's of Gy) in narrow stripes(sub-mm) of radiation which enables the study of novel radiation treatment approaches. Here we investigate the application of highresolution (50um isotropic) PRESAGE/Optical-CT 3D dosimetry techniques to characterize the radiation delivered in this extremely dosimetrically challenging scenario. Methods: The CNT field emission x-ray source irradiator comprises of a linear cathode array and a novel collimator alignment system. This allows a precise delivery of high-energy small beams up to 160 kVp. A cylindrical dosimeter (∼2.2cm in height ∼2.5cm in diameter) was irradiated by CNT MRT delivering 3 strips of radiation with a nominal entrance dose of 32 Gy.A second dosimeter was irradiated with similar entrance dose, with a regular x-ray irradiator collimated to microscopical strip-beams. 50um (isotropic) 3D dosimetry was performed using an in-house optical-CT system designed and optimized for high resolution imaging (including a stray light deconvolution correction).The percentage depth dose (PDD), peak-to-valley ratio (PVR) and beam width (FWHM) data were obtained and analyzed in both cases. Results: High resolution 3D images were successfully achieved with the prototype system, enabling extraction of PDD and dose profiles. The PDDs for the CNT irradiation showed pronounced attenuation, but less build-up effect than that from the multibeam irradiation. The beam spacing between the three strips has an average value of 0.9mm while that for the 13 strips is 1.5 mm at a depth of 16.5 mm. The stray light corrected image shows line profiles with reduced noise and consistent PVR values. Conclusion: MRT dosimetry is extremely challenging due to the ultra small fields involved.This preliminary application of a novel, ultra-high resolution, optical-CT 3D
NASA Astrophysics Data System (ADS)
Garnier, F.; Ghedhaifi, W.; Vancassel, X.; Khou, J. C.; Montreuil, E.
2015-12-01
Civil aviation contributes to degradation of air quality around airport (SOx, NOx, speciated hydrocarbons,…) and climate change through its emissions of greenhouse gases (CO2, water vapor), as well as particulate matters. These particles include soot particles formed in the combustor, volatile aerosols and contrails generated in the aircraft wake. Although the aircraft emissions represent today only about 3% of all those produced on the surface of the earth by other anthropogenic sources, they are mostly released in the very sensitive region of the upper troposphere/lower stratosphere. These emissions have a radiative effect reinforced by specific physical and chemical processes at high altitudes, such as cloud formation and ozone production. In this context, most of the work to-date assessed that the actual effect of aviation on the climate are affected by very large uncertainties, partly due to lack of knowledge on the mechanisms of new particles formation and growth processes in the exhaust plume of the aircraft. The engine exhaust gases are mixed in the ambient air under the influence of the interaction between the jet engine and the wing tip vortices. The characteristics of vortices as well as their interaction with the jet depend on the aircraft airframe especially on the wing geometry and the engine position (distance from the wing tip). The aim of this study is to examine the influence of aircraft parameters on contrail formation using a 3D CFD calculation based on a RANS (Reynolds Average Navier-Stokes) approach. Numerical simulations have been performed using CEDRE, the multiphysics ONERA code for energetics. CEDRE is a CFD code using finite volume methods and unstructured meshes. These meshes are especially appropriate when complex geometries are used. A transport model has been used for condensation of water vapor onto ice particles. Growth is evaluated using a modified Fick's law to mass transfer on particles. In this study, different aircraft
Shapiro, A.B.
1983-08-01
The computer code FACET calculates the radiation geometric view factor (alternatively called shape factor, angle factor, or configuration factor) between surfaces for axisymmetric, two-dimensional planar and three-dimensional geometries with interposed third surface obstructions. FACET was developed to calculate view factors for input to finite-element heat-transfer analysis codes. The first section of this report is a brief review of previous radiation-view-factor computer codes. The second section presents the defining integral equation for the geometric view factor between two surfaces and the assumptions made in its derivation. Also in this section are the numerical algorithms used to integrate this equation for the various geometries. The third section presents the algorithms used to detect self-shadowing and third-surface shadowing between the two surfaces for which a view factor is being calculated. The fourth section provides a user's input guide followed by several example problems.
Determination of the 5d6s3D1 State Lifetime and Blackbody Radiation Clock Shift in Yb
2012-08-03
transition due to room temperature blackbody radiation is dominated by a static Stark effect , which was recently measured to high accuracy [J. A. Shennan et...Stark effect , which was recently measured to high accuracy [J. A. Sherman et al., Phys. Rev. Lett. 108, 153002 (2012)]. However, room temperature... effect , which was recently measured to high accuracy [J. A. Sherman et al., Phys. Rev. Lett. 108, 153002 (2012)]. However, room temperature
Dubousset, Jean; Charpak, Georges; Dorion, Irène; Skalli, Wafa; Lavaste, François; Deguise, Jacques; Kalifa, Gabriel; Ferey, Solène
2005-02-01
Close collaboration between multidisciplinary specialists (physicists, biomecanical engineers, medical radiologists and pediatric orthopedic surgeons) has led to the development of a new low-dose radiation device named EOS. EOS has three main advantages: The use of a gaseous X-ray detector, invented by Georges Charpak (Nobel Prizewinner 1992), the dose necessary to obtain a 2D image of the skeletal system has been reduced by 8 to 10 times, while that required to obtain a 3D reconstruction from CT slices has fallen by a factor of 800 to 1000. The accuracy of the 3D reconstruction obtained with EOS is as good as that obtained with CT. The patient is examined in the standing (or seated) position, and is scanned simultaneously from head to feet, both frontally and laterally. This is a major advantage over conventional CT which requires the patient to be placed horizontally. -The 3D reconstructions of each element of the osteo-articular system are as precise as those obtained by conventional CT. EOS is also rapid, taking only 15 to 30 minutes to image the entire spine.
Scrape-off layer modeling of radiative divertor and high heat flux experiments on D3-D
NASA Astrophysics Data System (ADS)
Campbell, R. B.; Petrie, T. W.; Hill, D. N.
1992-03-01
We use a new multispecies 1-D fluid code, NEWT-1D, to model DIII-D scrape-off layer (SOL) behavior during radiative divertor and high heat flux experiments. The separatrix location and the width of the SOL are uncertain, and affect the comparison of the data in important ways. The model agrees with many of the experimental measurements for a particular prescription for the separatrix location. The model cannot explain the recent data on the separatrix T(sub i) with a conventional picture of ion and electron power flows across the separatrix. Radial transport of particles and heat in some form is required to explain the peak heat flux data before and after gas puffing. For argon puffing in the private flux region, entrainment is poor in the steady state. The calculations suggest that strike point argon puffing in a slot divertor geometry results in substantially better entrainment. Self-consistent, steady-state solutions with radiated powers up to 80 percent of the SOL power input are obtained in 1-D. We discuss significant radial effects which warrant the development of a code which can treat strongly radiating impurities in 2-D geometries.
Sonnik, Deborah; Selvaraj, Raj N; Faul, Clare; Gerszten, Kristina; Heron, Dwight E; King, Gwendolyn C
2007-01-01
Breast, chest wall, and regional nodal irradiation have been associated with an improved outcome in high-risk breast cancer patients. Complex treatment planning is often utilized to ensure complete coverage of the target volume while minimizing the dose to surrounding normal tissues. The 2 techniques evaluated in this report are the partially wide tangent fields (PWTFs) and the 4-field photon/electron combination (the modified "Kuske Technique"). These 2 techniques were evaluated in 10 consecutive breast cancer patients. All patients had computerized tomographic (CT) scans for 3D planning supine on a breast board. The breast was defined clinically by the physician and confirmed radiographically with radiopaque bebes. The resulting dose-volume histograms (DVHs) of normal and target tissues were then compared. The deep tangent field with blocks resulted in optimal coverage of the target and the upper internal mammary chain (IMC) while sparing of critical and nontarget tissues. The wide tangent technique required less treatment planning and delivery time. We compared the 2 techniques and their resultant DVHs and feasibility in a busy clinic.
Sonnik, Deborah; Selvaraj, Raj N. . E-mail: selvarajrn@upmc.edu; Faul, Clare; Gerszten, Kristina; Heron, Dwight E.; King, Gwendolyn C.
2007-04-01
Breast, chest wall, and regional nodal irradiation have been associated with an improved outcome in high-risk breast cancer patients. Complex treatment planning is often utilized to ensure complete coverage of the target volume while minimizing the dose to surrounding normal tissues. The 2 techniques evaluated in this report are the partially wide tangent fields (PWTFs) and the 4-field photon/electron combination (the modified 'Kuske Technique'). These 2 techniques were evaluated in 10 consecutive breast cancer patients. All patients had computerized tomographic (CT) scans for 3D planning supine on a breast board. The breast was defined clinically by the physician and confirmed radiographically with radiopaque bebes. The resulting dose-volume histograms (DVHs) of normal and target tissues were then compared. The deep tangent field with blocks resulted in optimal coverage of the target and the upper internal mammary chain (IMC) while sparing of critical and nontarget tissues. The wide tangent technique required less treatment planning and delivery time. We compared the 2 techniques and their resultant DVHs and feasibility in a busy clinic.
Wiscombe, Warren; Marshak, Alexander; Knyazikhin, Yuri; Chiu, Christine
2007-05-04
We have basically completed all the goals stated in the previous proposal and published or submitted journal papers thereon, the only exception being First-Principles Monte Carlo which has taken more time than expected. We finally finished the comprehensive book on 3D cloud radiative transfer (edited by Marshak and Davis and published by Springer), with many contributions by ARM scientists; this book was highlighted in the 2005 ARM Annual Report. We have also completed (for now) our pioneering work on new models of cloud drop clustering based on ARM aircraft FSSP data, with applications both to radiative transfer and to rainfall. This clustering work was highlighted in the FY07 “Our Changing Planet” (annual report of the US Climate Change Science Program). Our group published 22 papers, one book, and 5 chapters in that book, during this proposal period. All are listed at the end of this section. Below, we give brief highlights of some of those papers.
Liou, Kuo-Nan
2016-02-09
Under the support of the aforementioned DOE Grant, we have made two fundamental contributions to atmospheric and climate sciences: (1) Develop an efficient 3-D radiative transfer parameterization for application to intense and intricate inhomogeneous mountain/snow regions. (2) Innovate a stochastic parameterization for light absorption by internally mixed black carbon and dust particles in snow grains for understanding and physical insight into snow albedo reduction in climate models. With reference to item (1), we divided solar fluxes reaching mountain surfaces into five components: direct and diffuse fluxes, direct- and diffuse-reflected fluxes, and coupled mountain-mountain flux. “Exact” 3D Monte Carlo photon tracing computations can then be performed for these solar flux components to compare with those calculated from the conventional plane-parallel (PP) radiative transfer program readily available in climate models. Subsequently, Parameterizations of the deviations of 3D from PP results for five flux components are carried out by means of the multiple linear regression analysis associated with topographic information, including elevation, solar incident angle, sky view factor, and terrain configuration factor. We derived five regression equations with high statistical correlations for flux deviations and successfully incorporated this efficient parameterization into WRF model, which was used as the testbed in connection with the Fu-Liou-Gu PP radiation scheme that has been included in the WRF physics package. Incorporating this 3D parameterization program, we conducted simulations of WRF and CCSM4 to understand and evaluate the mountain/snow effect on snow albedo reduction during seasonal transition and the interannual variability for snowmelt, cloud cover, and precipitation over the Western United States presented in the final report. With reference to item (2), we developed in our previous research a geometric-optics surface-wave approach (GOS) for the
Alexander Marshak; Warren Wiscombe; Yuri Knyazikhin; Christine Chiu
2011-05-24
We proposed a variety of tasks centered on the following question: what can we learn about 3D cloud-radiation processes and aerosol-cloud interaction from rapid-sampling ARM measurements of spectral zenith radiance? These ARM measurements offer spectacular new and largely unexploited capabilities in both the temporal and spectral domains. Unlike most other ARM instruments, which average over many seconds or take samples many seconds apart, the new spectral zenith radiance measurements are fast enough to resolve natural time scales of cloud change and cloud boundaries as well as the transition zone between cloudy and clear areas. In the case of the shortwave spectrometer, the measurements offer high time resolution and high spectral resolution, allowing new discovery-oriented science which we intend to pursue vigorously. Research objectives are, for convenience, grouped under three themes: â¢ Understand radiative signature of the transition zone between cloud-free and cloudy areas using data from ARM shortwave radiometers, which has major climatic consequences in both aerosol direct and indirect effect studies. â¢ Provide cloud property retrievals from the ARM sites and the ARM Mobile Facility for studies of aerosol-cloud interactions. â¢ Assess impact of 3D cloud structures on aerosol properties using passive and active remote sensing techniques from both ARM and satellite measurements.
NASA Astrophysics Data System (ADS)
Godoy, William F.; DesJardin, Paul E.
2010-05-01
The application of flux limiters to the discrete ordinates method (DOM), SN, for radiative transfer calculations is discussed and analyzed for 3D enclosures for cases in which the intensities are strongly coupled to each other such as: radiative equilibrium and scattering media. A Newton-Krylov iterative method (GMRES) solves the final systems of linear equations along with a domain decomposition strategy for parallel computation using message passing libraries in a distributed memory system. Ray effects due to angular discretization and errors due to domain decomposition are minimized until small variations are introduced by these effects in order to focus on the influence of flux limiters on errors due to spatial discretization, known as numerical diffusion, smearing or false scattering. Results are presented for the DOM-integrated quantities such as heat flux, irradiation and emission. A variety of flux limiters are compared to "exact" solutions available in the literature, such as the integral solution of the RTE for pure absorbing-emitting media and isotropic scattering cases and a Monte Carlo solution for a forward scattering case. Additionally, a non-homogeneous 3D enclosure is included to extend the use of flux limiters to more practical cases. The overall balance of convergence, accuracy, speed and stability using flux limiters is shown to be superior compared to step schemes for any test case.
NASA Astrophysics Data System (ADS)
Davis, Anthony B.; Garay, Michael J.; Xu, Feng; Qu, Zheng; Emde, Claudia
2013-09-01
When observing a spatially complex mix of aerosols and clouds in a single relatively large field-of-view, nature entangles their signals non-linearly through polarized radiation transport processes that unfold in the 3D position and direction spaces. In contrast, any practical forward model in a retrieval algorithm will use only 1D vector radiative transfer (vRT) in a linear mixing technique. We assess the difference between the observed and predicted signals using synthetic data from a high-fidelity 3D vRT model with clouds generated using a Large Eddy Simulation model and an aerosol climatology. We find that this difference is signal—not noise—for the Aerosol Polarimetry Sensor (APS), an instrument developed by NASA. Moreover, the worst case scenario is also the most interesting case, namely, when the aerosol burden is large, hence hase the most impact on the cloud microphysics and dynamics. Based on our findings, we formulate a mitigation strategy for these unresolved cloud adjacency effects assuming that some spatial information is available about the structure of the clouds at higher resolution from "context" cameras, as was planned for NASA's ill-fated Glory mission that was to carry the APS but failed to reach orbit. Application to POLDER (POLarization and Directionality of Earth Reflectances) data from the period when PARASOL (Polarization and Anisotropy of Reflectances for Atmospheric Sciences coupled with Observations from a Lidar) was in the A-train is briefly discussed.
NASA Astrophysics Data System (ADS)
Fraser, Danielle; Fava, Palma; Cury, Fabio; Vuong, Te; Falco, Tony; Verhaegen, Frank
2007-03-01
Sonography has good topographic accuracy for superficial lymph node assessment in patients with head and neck cancers. It is therefore an ideal non-invasive tool for precise inter-fraction volumetric analysis of enlarged cervical nodes. In addition, when registered with computed tomography (CT) images, ultrasound information may improve target volume delineation and facilitate image-guided adaptive radiation therapy. A feasibility study was developed to evaluate the use of a prototype ultrasound system capable of three dimensional visualization and multi-modality image fusion for cervical node geometry. A ceiling-mounted optical tracking camera recorded the position and orientation of a transducer in order to synchronize the transducer's position with respect to the room's coordinate system. Tracking systems were installed in both the CT-simulator and radiation therapy treatment rooms. Serial images were collected at the time of treatment planning and at subsequent treatment fractions. Volume reconstruction was performed by generating surfaces around contours. The quality of the spatial reconstruction and semi-automatic segmentation was highly dependent on the system's ability to track the transducer throughout each scan procedure. The ultrasound information provided enhanced soft tissue contrast and facilitated node delineation. Manual segmentation was the preferred method to contour structures due to their sonographic topography.
SVD-GFD scheme to simulate complex moving body problems in 3D space
NASA Astrophysics Data System (ADS)
Wang, X. Y.; Yu, P.; Yeo, K. S.; Khoo, B. C.
2010-03-01
The present paper presents a hybrid meshfree-and-Cartesian grid method for simulating moving body incompressible viscous flow problems in 3D space. The method combines the merits of cost-efficient and accurate conventional finite difference approximations on Cartesian grids with the geometric freedom of generalized finite difference (GFD) approximations on meshfree grids. Error minimization in GFD is carried out by singular value decomposition (SVD). The Arbitrary Lagrangian-Eulerian (ALE) form of the Navier-Stokes equations on convecting nodes is integrated by a fractional-step projection method. The present hybrid grid method employs a relatively simple mode of nodal administration. Nevertheless, it has the geometrical flexibility of unstructured mesh-based finite-volume and finite element methods. Boundary conditions are precisely implemented on boundary nodes without interpolation. The present scheme is validated by a moving patch consistency test as well as against published results for 3D moving body problems. Finally, the method is applied on low-Reynolds number flapping wing applications, where large boundary motions are involved. The present study demonstrates the potential of the present hybrid meshfree-and-Cartesian grid scheme for solving complex moving body problems in 3D.
NASA Astrophysics Data System (ADS)
Bejarano Buele, Ana Isabel
The treatment regimen for breast cancer patients typically involves Whole Breast Irradiation (WBI). The coverage and extent of the radiation treatment is dictated by location of tumor mass, breast tissue distribution, involvement of lymph nodes, and other factors. The current standard treatment approach used at our institution is a 3D tangential beam geometry, which involves two fields irradiating the breast, or a four field beam arrangement covering the whole breast and involved nodes, while decreasing the dose to organs as risk (OARs) such as the lung and heart. The coverage of these targets can be difficult to achieve in patients with unfavorable thoracic geometries, especially in those cases in which the planning target volume (PTV) is extended to the chest wall. It is a well-known fact that exposure of the heart to ionizing radiation has been proved to increase the subsequent rate of ischemic heart disease. In these cases, inverse planned treatments have become a proven alternative to the 3D approach. The goal of this research project is to evaluate the factors that affect our current techniques as well as to adapt the development of inverse modulated techniques for our clinic, in which breast cancer patients are one of the largest populations treated. For this purpose, a dosimetric comparison along with the evaluation of immobilization devices was necessary. Radiation treatment plans were designed and dosimetrically compared for 5 patients in both, supine and prone positions. For 8 patients, VMAT and IMRT plans were created and evaluated in the supine position. Skin flash incorporation for inverse modulated plans required measurement of the surface dose as well as an evaluation of breast volume changes during a treatment course. It was found that prone 3D conformal plans as well as the VMAT and IMRT plans are generally superior in sparing OARs to supine plans with comparable PTV coverage. Prone setup leads to larger shifts in breast volume as well as in
2011-09-30
1 m 440 nm (b) 488 nm (c) 0.0 0.2 0.4 0.6 0.8 1.0 510 nm D oL P (d) 532 nm (e) 555 nm (f) -90 -45 0 45 90 135 0.0 0.2 0.4 0.6 0.8 1.0 650 nm (g) -90...1 m 440 nm (b) 488 nm (c) -90 -45 0 45 90 510 nm A oL P (d) 532 nm (e) 555 nm (f) -90 -45 0 45 90 135 -90 -45 0 45 90 650 nm (g) -90 -45 0 45 90 135...47-56, (1991) 3. A. Sánchez, T.F. Smith, and W. F. Krajewski “A three-dimensional atmospheric radiative transfer model based on the discrete
Eriksson, Mats E.; Terfelt, Fredrik
2012-01-01
The Cambrian ‘Orsten’ fauna comprises exceptionally preserved and phosphatised microscopic arthropods. The external morphology of these fossils is well known, but their internal soft-tissue anatomy has remained virtually unknown. Here, we report the first non-biomineralised tissues from a juvenile polymerid trilobite, represented by digestive structures, glands, and connective strands harboured in a hypostome from the Swedish ‘Orsten’ fauna. Synchrotron-radiation X-ray tomographic microscopy enabled three-dimensional internal recordings at sub-micrometre resolution. The specimen provides the first unambiguous evidence for a J-shaped anterior gut and the presence of a crop with a constricted alimentary tract in the Trilobita. Moreover, the gut is Y-shaped in cross section, probably due to a collapsed lumen of that shape, another feature which has not previously been observed in trilobites. The combination of anatomical features suggests that the trilobite hypostome is functionally analogous to the labrum of euarthropods and that it was a sophisticated element closely integrated with the digestive system. This study also briefly addresses the preservational bias of the ‘Orsten’ fauna, particularly the near-absence of polymerid trilobites, and the taphonomy of the soft-tissue-harbouring hypostome. PMID:22558180
Eriksson, Mats E; Terfelt, Fredrik
2012-01-01
The Cambrian 'Orsten' fauna comprises exceptionally preserved and phosphatised microscopic arthropods. The external morphology of these fossils is well known, but their internal soft-tissue anatomy has remained virtually unknown. Here, we report the first non-biomineralised tissues from a juvenile polymerid trilobite, represented by digestive structures, glands, and connective strands harboured in a hypostome from the Swedish 'Orsten' fauna. Synchrotron-radiation X-ray tomographic microscopy enabled three-dimensional internal recordings at sub-micrometre resolution. The specimen provides the first unambiguous evidence for a J-shaped anterior gut and the presence of a crop with a constricted alimentary tract in the Trilobita. Moreover, the gut is Y-shaped in cross section, probably due to a collapsed lumen of that shape, another feature which has not previously been observed in trilobites. The combination of anatomical features suggests that the trilobite hypostome is functionally analogous to the labrum of euarthropods and that it was a sophisticated element closely integrated with the digestive system. This study also briefly addresses the preservational bias of the 'Orsten' fauna, particularly the near-absence of polymerid trilobites, and the taphonomy of the soft-tissue-harbouring hypostome.
NASA Astrophysics Data System (ADS)
Schneider, Philipp; Voide, Romain; Stampanoni, Marco; Müller, Ralph
2008-03-01
Recent data have shown that predicting bone strength can be greatly improved by including microarchitectural parameters in the analysis. Moreover, bone ultrastructure has been implicated as an important contributor to bone strength. We therefore hypothesized that a better understanding of phenotypes linked to bone ultrastructure will provide new insight in the assessment of bone quality and its contribution to bone strength and fracture risk. Therefore, we first developed an experimental design to assess quantitatively ultrastructural murine bone tissue properties non-invasively in three dimensions by using synchrotron radiation-based (SR) computed tomography (CT) methods with resolutions on the order of one micrometer and below. New morphometric indices were introduced to quantify ultrastructural phenotypes of murine cortical bone assessed by our SR CT-based setup, namely the canal network and the osteocyte lacunar system. These ultrastructural phenotypes were then successfully studied in two genetically distinct mouse strains. Finally, we provided strong evidence for a significant influence of the canal network on murine bone mechanics. In the long run, we believe that the morphometric analysis of the ultrastructural phenotypes and the study of bone phenotypes at different hierarchy levels, in conjunction with bone mechanics, will provide new insights in the assessment of bone quality.
NASA Astrophysics Data System (ADS)
Nickel, Michael; Hammel, Jörg U.; Herzen, Julia; Bullinger, Eric; Beckmann, Felix
2008-08-01
Zoological sciences widely rely on morphological data to reconstruct and understand body structures of animals. The best suitable methods like tomography allow for a direct representation of 3D-structures. In recent years, synchrotron radiation based x-ray microtomography (SR μCT) placed high resolutions to the disposal of morphologists. With the development of highly brilliant and collimated third generation synchrotron sources, phase contrast SR μCT became widely available. A number of scientific contributions stressed the superiority of phase contrast over absorption contrast. However, here we demonstrate the power of high density resolution methods based on absorption-contrast SRμCT for quantitative 3D-measurements of tissues and other delicate bio-structures in zoological sciences. We used beamline BW2 at DORIS III (DESY, Hamburg, Germany) to perform microtomography on tissue and mineral skeletons of marine sponges (Porifera) which were shock frozen and/or fixed in a glutamate osmium tetroxide solution, followed by critical point drying. High density resolution tomographic reconstructions allowed running quantitative 3D-image analyses in Matlab and ImageJ. By applying contrast and shape rule based algorithms we semi-automatically extracted and measured sponge body structures like mineral spicules, elements of the canal system or tissue structures. This lead to a better understanding of sponge biology: from skeleton functional morphology and internal water flow regimes to body contractility. Our high density resolution based quantitative approach can be applied to a wide variety of biological structures. However, two prerequisites apply: (1) maximum density resolution is necessary; (2) edge effects as seen for example in phase outline contrast SR μCT must not be present. As a consequence, to allow biological sciences to fully exploit the power of SR μCT further increase of density resolution in absorption contrast methods is desirable.
Gessner, Ryan C; Streeter, Jason E; Kothadia, Roshni; Feingold, Steven; Dayton, Paul A
2012-04-01
For more than a decade, the application of acoustic radiation force (ARF) has been proposed as a mechanism to increase ultrasonic molecular imaging (MI) sensitivity in vivo. Presented herein is the first noninvasive in vivo validation of ARF-enhanced MI with an unmodified clinical system. First, an in vitro optical-acoustical setup was used to optimize system parameters and ensure sufficient microbubble translation when exposed to ARF. 3-D ARF-enhanced MI was then performed on 7 rat fibrosarcoma tumors using microbubbles targeted to α(v)β₃ and nontargeted microbubbles. Low-amplitude (<25 kPa) 3-D ARF pulse sequences were tested and compared with passive targeting studies in the same animal. Our results demonstrate that a 78% increase in image intensity from targeted microbubbles can be achieved when using ARF relative to the passive targeting studies. Furthermore, ARF did not significantly increase image contrast when applied to nontargeted agents, suggesting that ARF did not increase nonspecific adhesion.
Forsberg, F; Mooser, R; Arnold, M; Hack, E; Wyss, P
2008-12-01
A micro-scale three-point-bending experiment with a wood specimen was carried out and monitored by synchrotron radiation micro-computed tomography. The full three-dimensional wood structure of the 1.57x3.42x0.75mm(3) specimen was reconstructed at cellular level in different loading states. Furthermore, the full three-dimensional deformation field of the loaded wood specimen was determined by digital volume correlation, applied to the reconstructed data at successive loading states. Results from two selected regions within the wood specimen are presented as continuous displacement and strain fields in both 2D and 3D. The applied combination of synchrotron radiation micro-computed tomography and digital volume correlation for the deformation analysis of wood under bending stress is a novel application in wood material science. The method offers the potential for the simultaneous observation of structural changes and quantified deformations during in situ micro-mechanical experiments. Moreover, the high spatial resolution allows studying the influence of anatomical features on the fracture behaviour of wood. Possible applications of this method range from bio-mechanical observations in fresh plant tissue to fracture mechanics aspects in structural timber.
NASA Astrophysics Data System (ADS)
Fraser, Danielle
In radiation therapy an uncertainty in the delivered dose always exists because anatomic changes are unpredictable and patient specific. Image guided radiation therapy (IGRT) relies on imaging in the treatment room to monitor the tumour and surrounding tissue to ensure their prescribed position in the radiation beam. The goal of this thesis was to determine the dosimetric impact on the misaligned radiation therapy target for three cancer sites due to common setup errors; organ motion, tumour tissue deformation, changes in body habitus, and treatment planning errors. For this purpose, a novel 3D ultrasound system (Restitu, Resonant Medical, Inc.) was used to acquire a reference image of the target in the computed tomography simulation room at the time of treatment planning, to acquire daily images in the treatment room at the time of treatment delivery, and to compare the daily images to the reference image. The measured differences in position and volume between daily and reference geometries were incorporated into Monte Carlo (MC) dose calculations. The EGSnrc (National Research Council, Canada) family of codes was used to model Varian linear accelerators and patient specific beam parameters, as well as to estimate the dose to the target and organs at risk under several different scenarios. After validating the necessity of MC dose calculations in the pelvic region, the impact of interfraction prostate motion, and subsequent patient realignment under the treatment beams, on the delivered dose was investigated. For 32 patients it is demonstrated that using 3D conformal radiation therapy techniques and a 7 mm margin, the prescribed dose to the prostate, rectum, and bladder is recovered within 0.5% of that planned when patient setup is corrected for prostate motion, despite the beams interacting with a new external surface and internal tissue boundaries. In collaboration with the manufacturer, the ultrasound system was adapted from transabdominal imaging to neck
Nakamoto, Takahiro; Arimura, Hidetaka; Nakamura, Katsumasa; Shioyama, Yoshiyuki; Mizoguchi, Asumi; Hirose, Taka-Aki; Honda, Hiroshi; Umezu, Yoshiyuki; Nakamura, Yasuhiko; Hirata, Hideki
2015-03-01
A computerized framework for monitoring four-dimensional (4D) dose distributions during stereotactic body radiation therapy based on a portal dose image (PDI)-based 2D/3D registration approach has been proposed in this study. Using the PDI-based registration approach, simulated 4D "treatment" CT images were derived from the deformation of 3D planning CT images so that a 2D planning PDI could be similar to a 2D dynamic clinical PDI at a breathing phase. The planning PDI was calculated by applying a dose calculation algorithm (a pencil beam convolution algorithm) to the geometry of the planning CT image and a virtual water equivalent phantom. The dynamic clinical PDIs were estimated from electronic portal imaging device (EPID) dynamic images including breathing phase data obtained during a treatment. The parameters of the affine transformation matrix were optimized based on an objective function and a gamma pass rate using a Levenberg-Marquardt (LM) algorithm. The proposed framework was applied to the EPID dynamic images of ten lung cancer patients, which included 183 frames (mean: 18.3 per patient). The 4D dose distributions during the treatment time were successfully obtained by applying the dose calculation algorithm to the simulated 4D "treatment" CT images. The mean±standard deviation (SD) of the percentage errors between the prescribed dose and the estimated dose at an isocenter for all cases was 3.25±4.43%. The maximum error for the ten cases was 14.67% (prescribed dose: 1.50Gy, estimated dose: 1.72Gy), and the minimum error was 0.00%. The proposed framework could be feasible for monitoring the 4D dose distribution and dose errors within a patient's body during treatment.
Gary W. Phillips
2000-12-20
We have investigated 3-dimensional optical random access memory (3D-ORAM) materials for detection and characterization of charged particles of neutrons by detecting tracks left by the recoil charged particles produced by the neutrons. We have characterized the response of these materials to protons, alpha particles and carbon-12 nuclei as a functions of dose and energy. We have observed individual tracks using scanning electron microscopy and atomic force microscopy. We are investigating the use of neural net analysis to characterize energetic neutron fields from their track structure in these materials.
NASA Astrophysics Data System (ADS)
Pletinckx, D.
2011-09-01
The current 3D hype creates a lot of interest in 3D. People go to 3D movies, but are we ready to use 3D in our homes, in our offices, in our communication? Are we ready to deliver real 3D to a general public and use interactive 3D in a meaningful way to enjoy, learn, communicate? The CARARE project is realising this for the moment in the domain of monuments and archaeology, so that real 3D of archaeological sites and European monuments will be available to the general public by 2012. There are several aspects to this endeavour. First of all is the technical aspect of flawlessly delivering 3D content over all platforms and operating systems, without installing software. We have currently a working solution in PDF, but HTML5 will probably be the future. Secondly, there is still little knowledge on how to create 3D learning objects, 3D tourist information or 3D scholarly communication. We are still in a prototype phase when it comes to integrate 3D objects in physical or virtual museums. Nevertheless, Europeana has a tremendous potential as a multi-facetted virtual museum. Finally, 3D has a large potential to act as a hub of information, linking to related 2D imagery, texts, video, sound. We describe how to create such rich, explorable 3D objects that can be used intuitively by the generic Europeana user and what metadata is needed to support the semantic linking.
Palmeri, Mark L; Glass, Tyler J; Miller, Zachary A; Rosenzweig, Stephen J; Buck, Andrew; Polascik, Thomas J; Gupta, Rajan T; Brown, Alison F; Madden, John; Nightingale, Kathryn R
2016-06-01
Overly aggressive prostate cancer (PCa) treatment adversely affects patients and places an unnecessary burden on our health care system. The inability to identify and grade clinically significant PCa lesions is a factor contributing to excessively aggressive PCa treatment, such as radical prostatectomy, instead of more focal, prostate-sparing procedures such as cryotherapy and high-dose radiation therapy. We have performed 3-D in vivo B-mode and acoustic radiation force impulse (ARFI) imaging using a mechanically rotated, side-fire endorectal imaging array to identify regions suspicious for PCa in 29 patients being treated with radical prostatectomies for biopsy-confirmed PCa. Whole-mount histopathology analyses were performed to identify regions of clinically significant/insignificant PCa lesions, atrophy and benign prostatic hyperplasia. Regions of suspicion for PCa were reader-identified in ARFI images based on boundary delineation, contrast, texture and location. These regions of suspicion were compared with histopathology identified lesions using a nearest-neighbor regional localization approach. Of all clinically significant lesions identified on histopathology, 71.4% were also identified using ARFI imaging, including 79.3% of posterior and 33.3% of anterior lesions. Among the ARFI-identified lesions, 79.3% corresponded to clinically significant PCa lesions, with these lesions having higher indices of suspicion than clinically insignificant PCa. ARFI imaging had greater sensitivity for posterior versus anterior lesions because of greater displacement signal-to-noise ratio and finer spatial sampling. Atrophy and benign prostatic hyperplasia can cause appreciable prostate anatomy distortion and heterogeneity that confounds ARFI PCa lesion identification; however, in general, ARFI regions of suspicion did not coincide with these benign pathologies.
NASA Astrophysics Data System (ADS)
Yin, Xian-Zhen; Xiao, Ti-Qiao; Nangia, Ashwini; Yang, Shuo; Lu, Xiao-Long; Li, Hai-Yan; Shao, Qun; He, You; York, Peter; Zhang, Ji-Wen
2016-04-01
Polymorphism denotes the existence of more than one crystal structure of a substance, and great practical and theoretical interest for the chemical and pharmaceutical industries. In many cases, it is challenging to produce a pure crystal form and establish a sensitive detection method for the identification of crystal form in a mixture of polymorphs. In this study, an accurate and sensitive method based on synchrotron radiation X-ray computed microtomography (SR-μCT) was devised to identify the polymorphs of clopidogrel bisulphate (CLP). After 3D reconstruction, crystal particles were extracted and dozens of structural parameters were calculated. Whilst, the particle shapes of the two crystal forms were all irregular, the surface of CLP II was found to be rougher than CLP I. In order to classify the crystal form based on the quantitative morphological property of particles, Volume Bias Percentage based on Surface Smoothing (VBP) was defined and a new method based on VBP was successfully developed, with a total matching rate of 99.91% for 4544 particles and a lowest detectable limit of 1%. More important for the mixtures in solid pharmaceutical formulations, the interference of excipients can be avoided, a feature cannot achieved by other available analytical methods.
Chiu, Jui-Yuan
2010-10-19
Our proposal focuses on cloud-radiation processes in a general 3D cloud situation, with particular emphasis on cloud optical depth and effective particle size. We also focus on zenith radiance measurements, both active and passive. The proposal has three main parts. Part One exploits the "solar-background" mode of ARM lidars to allow them to retrieve cloud optical depth not just for thin clouds but for all clouds. This also enables the study of aerosol cloud interactions with a single instrument. Part Two exploits the large number of new wavelengths offered by ARM's zenith-pointing ShortWave Spectrometer (SWS), especially during CLASIC, to develop better retrievals not only of cloud optical depth but also of cloud particle size. We also propose to take advantage of the SWS's 1 Hz sampling to study the "twilight zone" around clouds where strong aerosol-cloud interactions are taking place. Part Three involves continuing our cloud optical depth and cloud fraction retrieval research with ARM's 2NFOV instrument by, first, analyzing its data from the AMF-COPS/CLOWD deployment, and second, making our algorithms part of ARM's operational data processing.
Accelerating DynEarthSol3D on tightly coupled CPU-GPU heterogeneous processors
NASA Astrophysics Data System (ADS)
Ta, Tuan; Choo, Kyoshin; Tan, Eh; Jang, Byunghyun; Choi, Eunseo
2015-06-01
DynEarthSol3D (Dynamic Earth Solver in Three Dimensions) is a flexible, open-source finite element solver that models the momentum balance and the heat transfer of elasto-visco-plastic material in the Lagrangian form using unstructured meshes. It provides a platform for the study of the long-term deformation of earth's lithosphere and various problems in civil and geotechnical engineering. However, the continuous computation and update of a very large mesh poses an intolerably high computational burden to developers and users in practice. For example, simulating a small input mesh containing around 3000 elements in 20 million time steps would take more than 10 days on a high-end desktop CPU. In this paper, we explore tightly coupled CPU-GPU heterogeneous processors to address the computing concern by leveraging their new features and developing hardware-architecture-aware optimizations. Our proposed key optimization techniques are three-fold: memory access pattern improvement, data transfer elimination and kernel launch overhead minimization. Experimental results show that our proposed implementation on a tightly coupled heterogeneous processor outperforms all other alternatives including traditional discrete GPU, quad-core CPU using OpenMP, and serial implementations by 67%, 50%, and 154% respectively even though the embedded GPU in the heterogeneous processor has significantly less number of cores than high-end discrete GPU.
3d-3d correspondence revisited
Chung, Hee -Joong; Dimofte, Tudor; Gukov, Sergei; ...
2016-04-21
In fivebrane compactifications on 3-manifolds, we point out the importance of all flat connections in the proper definition of the effective 3d N = 2 theory. The Lagrangians of some theories with the desired properties can be constructed with the help of homological knot invariants that categorify colored Jones polynomials. Higgsing the full 3d theories constructed this way recovers theories found previously by Dimofte-Gaiotto-Gukov. As a result, we also consider the cutting and gluing of 3-manifolds along smooth boundaries and the role played by all flat connections in this operation.
NASA Astrophysics Data System (ADS)
Meulien Ohlmann, Odile
2013-02-01
Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?
NASA Astrophysics Data System (ADS)
Min, M.; Dullemond, C. P.; Kama, M.; Dominik, C.
2011-03-01
The precise location of the water ice condensation front (‘snow line’) in the protosolar nebula has been a debate for a long time. Its importance stems from the expected substantial jump in the abundance of solids beyond the snow line, which is conducive to planet formation, and from the higher ‘stickiness’ in collisions of ice-coated dust grains, which may help the process of coagulation of dust and the formation of planetesimals. In an optically thin nebula, the location of the snow line is easily calculated to be around 3 AU, subject to brightness variations of the young Sun. However, in its first 5-10 myr, the solar nebula was optically thick, implying a smaller snowline radius due to shielding from direct sunlight, but also a larger radius because of viscous heating. Several models have attempted to treat these opposing effects. However, until recently treatments beyond an approximate 1 + 1D radiative transfer were unfeasible. We revisit the problem with a fully self-consistent 3D treatment in an axisymmetric disk model, including a density-dependent treatment of the dust and ice sublimation. We find that the location of the snow line is very sensitive to the opacities of the dust grains and the mass accretion rate of the disk. We show that previous approximate treatments are quite efficient at determining the location of the snow line if the energy budget is locally dominated by viscous accretion. Using this result we derive an analytic estimate of the location of the snow line that compares very well with results from this and previous studies. Using solar abundances of the elements we compute the abundance of dust and ice and find that the expected jump in solid surface density at the snow line is smaller than previously assumed. We further show that in the inner few AU the refractory species are also partly evaporated, leading to a significantly smaller solid state surface density in the regions where the rocky planets were formed.
Douglass, Michael; Bezak, Eva; Penfold, Scott
2013-07-15
Purpose: Investigation of increased radiation dose deposition due to gold nanoparticles (GNPs) using a 3D computational cell model during x-ray radiotherapy.Methods: Two GNP simulation scenarios were set up in Geant4; a single 400 nm diameter gold cluster randomly positioned in the cytoplasm and a 300 nm gold layer around the nucleus of the cell. Using an 80 kVp photon beam, the effect of GNP on the dose deposition in five modeled regions of the cell including cytoplasm, membrane, and nucleus was simulated. Two Geant4 physics lists were tested: the default Livermore and custom built Livermore/DNA hybrid physics list. 10{sup 6} particles were simulated at 840 cells in the simulation. Each cell was randomly placed with random orientation and a diameter varying between 9 and 13 {mu}m. A mathematical algorithm was used to ensure that none of the 840 cells overlapped. The energy dependence of the GNP physical dose enhancement effect was calculated by simulating the dose deposition in the cells with two energy spectra of 80 kVp and 6 MV. The contribution from Auger electrons was investigated by comparing the two GNP simulation scenarios while activating and deactivating atomic de-excitation processes in Geant4.Results: The physical dose enhancement ratio (DER) of GNP was calculated using the Monte Carlo model. The model has demonstrated that the DER depends on the amount of gold and the position of the gold cluster within the cell. Individual cell regions experienced statistically significant (p < 0.05) change in absorbed dose (DER between 1 and 10) depending on the type of gold geometry used. The DER resulting from gold clusters attached to the cell nucleus had the more significant effect of the two cases (DER {approx} 55). The DER value calculated at 6 MV was shown to be at least an order of magnitude smaller than the DER values calculated for the 80 kVp spectrum. Based on simulations, when 80 kVp photons are used, Auger electrons have a statistically insignificant (p
ERIC Educational Resources Information Center
Hastings, S. K.
2002-01-01
Discusses 3 D imaging as it relates to digital representations in virtual library collections. Highlights include X-ray computed tomography (X-ray CT); the National Science Foundation (NSF) Digital Library Initiatives; output peripherals; image retrieval systems, including metadata; and applications of 3 D imaging for libraries and museums. (LRW)
Mijnheer, B; Mans, A; Olaciregui-Ruiz, I; Rozendaal, R; Spreeuw, H; Herk, M van
2014-06-15
Purpose: To develop a 3D in vivo dosimetry method that is able to substitute pre-treatment verification in an efficient way, and to terminate treatment delivery if the online measured 3D dose distribution deviates too much from the predicted dose distribution. Methods: A back-projection algorithm has been further developed and implemented to enable automatic 3D in vivo dose verification of IMRT/VMAT treatments using a-Si EPIDs. New software tools were clinically introduced to allow automated image acquisition, to periodically inspect the record-and-verify database, and to automatically run the EPID dosimetry software. The comparison of the EPID-reconstructed and planned dose distribution is done offline to raise automatically alerts and to schedule actions when deviations are detected. Furthermore, a software package for online dose reconstruction was also developed. The RMS of the difference between the cumulative planned and reconstructed 3D dose distributions was used for triggering a halt of a linac. Results: The implementation of fully automated 3D EPID-based in vivo dosimetry was able to replace pre-treatment verification for more than 90% of the patient treatments. The process has been fully automated and integrated in our clinical workflow where over 3,500 IMRT/VMAT treatments are verified each year. By optimizing the dose reconstruction algorithm and the I/O performance, the delivered 3D dose distribution is verified in less than 200 ms per portal image, which includes the comparison between the reconstructed and planned dose distribution. In this way it was possible to generate a trigger that can stop the irradiation at less than 20 cGy after introducing large delivery errors. Conclusion: The automatic offline solution facilitated the large scale clinical implementation of 3D EPID-based in vivo dose verification of IMRT/VMAT treatments; the online approach has been successfully tested for various severe delivery errors.
TACO3D. 3-D Finite Element Heat Transfer Code
Mason, W.E.
1992-03-04
TACO3D is a three-dimensional, finite-element program for heat transfer analysis. An extension of the two-dimensional TACO program, it can perform linear and nonlinear analyses and can be used to solve either transient or steady-state problems. The program accepts time-dependent or temperature-dependent material properties, and materials may be isotropic or orthotropic. A variety of time-dependent and temperature-dependent boundary conditions and loadings are available including temperature, flux, convection, and radiation boundary conditions and internal heat generation. Additional specialized features treat enclosure radiation, bulk nodes, and master/slave internal surface conditions (e.g., contact resistance). Data input via a free-field format is provided. A user subprogram feature allows for any type of functional representation of any independent variable. A profile (bandwidth) minimization option is available. The code is limited to implicit time integration for transient solutions. TACO3D has no general mesh generation capability. Rows of evenly-spaced nodes and rows of sequential elements may be generated, but the program relies on separate mesh generators for complex zoning. TACO3D does not have the ability to calculate view factors internally. Graphical representation of data in the form of time history and spatial plots is provided through links to the POSTACO and GRAPE postprocessor codes.
Spong, Donald A
2016-06-20
AE3D solves for the shear Alfven eigenmodes and eigenfrequencies in a torodal magnetic fusion confinement device. The configuration can be either 2D (e.g. tokamak, reversed field pinch) or 3D (e.g. stellarator, helical reversed field pinch, tokamak with ripple). The equations solved are based on a reduced MHD model and sound wave coupling effects are not currently included.
Giaddui, T; Yu, J; Xiao, Y; Jacobs, P; Manfredi, D; Linnemann, N
2015-06-15
Purpose: 2D-2D kV image guided radiation therapy (IGRT) credentialing evaluation for clinical trial qualification was historically qualitative through submitting screen captures of the fusion process. However, as quantitative DICOM 2D-2D and 2D-3D image registration tools are implemented in clinical practice for better precision, especially in centers that treat patients with protons, better IGRT credentialing techniques are needed. The aim of this work is to establish methodologies for quantitatively reviewing IGRT submissions based on DICOM 2D-2D and 2D-3D image registration and to test the methodologies in reviewing 2D-2D and 2D-3D IGRT submissions for RTOG/NRG Oncology clinical trials qualifications. Methods: DICOM 2D-2D and 2D-3D automated and manual image registration have been tested using the Harmony tool in MIM software. 2D kV orthogonal portal images are fused with the reference digital reconstructed radiographs (DRR) in the 2D-2D registration while the 2D portal images are fused with DICOM planning CT image in the 2D-3D registration. The Harmony tool allows alignment of the two images used in the registration process and also calculates the required shifts. Shifts calculated using MIM are compared with those submitted by institutions for IGRT credentialing. Reported shifts are considered to be acceptable if differences are less than 3mm. Results: Several tests have been performed on the 2D-2D and 2D-3D registration. The results indicated good agreement between submitted and calculated shifts. A workflow for reviewing these IGRT submissions has been developed and will eventually be used to review IGRT submissions. Conclusion: The IROC Philadelphia RTQA center has developed and tested a new workflow for reviewing DICOM 2D-2D and 2D-3D IGRT credentialing submissions made by different cancer clinical centers, especially proton centers. NRG Center for Innovation in Radiation Oncology (CIRO) and IROC RTQA center continue their collaborative efforts to enhance
NASA Astrophysics Data System (ADS)
Moore, Gregory F.
2009-05-01
This volume is a brief introduction aimed at those who wish to gain a basic and relatively quick understanding of the interpretation of three-dimensional (3-D) seismic reflection data. The book is well written, clearly illustrated, and easy to follow. Enough elementary mathematics are presented for a basic understanding of seismic methods, but more complex mathematical derivations are avoided. References are listed for readers interested in more advanced explanations. After a brief introduction, the book logically begins with a succinct chapter on modern 3-D seismic data acquisition and processing. Standard 3-D acquisition methods are presented, and an appendix expands on more recent acquisition techniques, such as multiple-azimuth and wide-azimuth acquisition. Although this chapter covers the basics of standard time processing quite well, there is only a single sentence about prestack depth imaging, and anisotropic processing is not mentioned at all, even though both techniques are now becoming standard.
NASA Astrophysics Data System (ADS)
Moortgat, Joachim; Firoozabadi, Abbas
2016-06-01
Problems of interest in hydrogeology and hydrocarbon resources involve complex heterogeneous geological formations. Such domains are most accurately represented in reservoir simulations by unstructured computational grids. Finite element methods accurately describe flow on unstructured meshes with complex geometries, and their flexible formulation allows implementation on different grid types. In this work, we consider for the first time the challenging problem of fully compositional three-phase flow in 3D unstructured grids, discretized by any combination of tetrahedra, prisms, and hexahedra. We employ a mass conserving mixed hybrid finite element (MHFE) method to solve for the pressure and flux fields. The transport equations are approximated with a higher-order vertex-based discontinuous Galerkin (DG) discretization. We show that this approach outperforms a face-based implementation of the same polynomial order. These methods are well suited for heterogeneous and fractured reservoirs, because they provide globally continuous pressure and flux fields, while allowing for sharp discontinuities in compositions and saturations. The higher-order accuracy improves the modeling of strongly non-linear flow, such as gravitational and viscous fingering. We review the literature on unstructured reservoir simulation models, and present many examples that consider gravity depletion, water flooding, and gas injection in oil saturated reservoirs. We study convergence rates, mesh sensitivity, and demonstrate the wide applicability of our chosen finite element methods for challenging multiphase flow problems in geometrically complex subsurface media.
Iliesiu, Luca; Kos, Filip; Poland, David; ...
2016-03-17
We study the conformal bootstrap for a 4-point function of fermions <ψψψψ> in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge CT. We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N. Finally, we also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.
Iliesiu, Luca; Kos, Filip; Poland, David; Pufu, Silviu S.; Simmons-Duffin, David; Yacoby, Ran
2016-03-17
We study the conformal bootstrap for a 4-point function of fermions <ψψψψ> in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge C_{T}. We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N. Finally, we also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.
Laboure, Vincent M.; McClarren, Ryan G.; Hauck, Cory D.
2016-09-15
In this work, we provide a fully-implicit implementation of the time-dependent, filtered spherical harmonics (FP{sub N}) equations for non-linear, thermal radiative transfer. We investigate local filtering strategies and analyze the effect of the filter on the conditioning of the system, showing in particular that the filter improves the convergence properties of the iterative solver. We also investigate numerically the rigorous error estimates derived in the linear setting, to determine whether they hold also for the non-linear case. Finally, we simulate a standard test problem on an unstructured mesh and make comparisons with implicit Monte Carlo (IMC) calculations.
NASA Technical Reports Server (NTRS)
Plaut, Jeffrey J.
1993-01-01
Stereographic images of the surface of Venus which enable geologists to reconstruct the details of the planet's evolution are discussed. The 120-meter resolution of these 3D images make it possible to construct digital topographic maps from which precise measurements can be made of the heights, depths, slopes, and volumes of geologic structures.
NASA Astrophysics Data System (ADS)
Carson, Jeffrey J. L.; Roumeliotis, Michael; Chaudhary, Govind; Stodilka, Robert Z.; Anastasio, Mark A.
2010-06-01
Our group has concentrated on development of a 3D photoacoustic imaging system for biomedical imaging research. The technology employs a sparse parallel detection scheme and specialized reconstruction software to obtain 3D optical images using a single laser pulse. With the technology we have been able to capture 3D movies of translating point targets and rotating line targets. The current limitation of our 3D photoacoustic imaging approach is its inability ability to reconstruct complex objects in the field of view. This is primarily due to the relatively small number of projections used to reconstruct objects. However, in many photoacoustic imaging situations, only a few objects may be present in the field of view and these objects may have very high contrast compared to background. That is, the objects have sparse properties. Therefore, our work had two objectives: (i) to utilize mathematical tools to evaluate 3D photoacoustic imaging performance, and (ii) to test image reconstruction algorithms that prefer sparseness in the reconstructed images. Our approach was to utilize singular value decomposition techniques to study the imaging operator of the system and evaluate the complexity of objects that could potentially be reconstructed. We also compared the performance of two image reconstruction algorithms (algebraic reconstruction and l1-norm techniques) at reconstructing objects of increasing sparseness. We observed that for a 15-element detection scheme, the number of measureable singular vectors representative of the imaging operator was consistent with the demonstrated ability to reconstruct point and line targets in the field of view. We also observed that the l1-norm reconstruction technique, which is known to prefer sparseness in reconstructed images, was superior to the algebraic reconstruction technique. Based on these findings, we concluded (i) that singular value decomposition of the imaging operator provides valuable insight into the capabilities of
Ma, C; Yin, Y
2015-06-15
Purpose: A method using four-dimensional(4D) PET/CT in design of radiation treatment planning was proposed and the target volume and radiation dose distribution changes relative to standard three-dimensional (3D) PET/CT were examined. Methods: A target deformable registration method was used by which the whole patient’s respiration process was considered and the effect of respiration motion was minimized when designing radiotherapy planning. The gross tumor volume of a non-small-cell lung cancer was contoured on the 4D FDG-PET/CT and 3D PET/CT scans by use of two different techniques: manual contouring by an experienced radiation oncologist using a predetermined protocol; another technique using a constant threshold of standardized uptake value (SUV) greater than 2.5. The target volume and radiotherapy dose distribution between VOL3D and VOL4D were analyzed. Results: For all phases, the average automatic and manually GTV volume was 18.61 cm3 (range, 16.39–22.03 cm3) and 31.29 cm3 (range, 30.11–35.55 cm3), respectively. The automatic and manually volume of merged IGTV were 27.82 cm3 and 49.37 cm3, respectively. For the manual contour, compared to 3D plan the mean dose for the left, right, and total lung of 4D plan have an average decrease 21.55%, 15.17% and 15.86%, respectively. The maximum dose of spinal cord has an average decrease 2.35%. For the automatic contour, the mean dose for the left, right, and total lung have an average decrease 23.48%, 16.84% and 17.44%, respectively. The maximum dose of spinal cord has an average decrease 1.68%. Conclusion: In comparison to 3D PET/CT, 4D PET/CT may better define the extent of moving tumors and reduce the contouring tumor volume thereby optimize radiation treatment planning for lung tumors.
PLUM: Parallel Load Balancing for Adaptive Unstructured Meshes
NASA Technical Reports Server (NTRS)
Oliker, Leonid; Biswas, Rupak; Saini, Subhash (Technical Monitor)
1998-01-01
Mesh adaption is a powerful tool for efficient unstructured-grid computations but causes load imbalance among processors on a parallel machine. We present a novel method called PLUM to dynamically balance the processor workloads with a global view. This paper presents the implementation and integration of all major components within our dynamic load balancing strategy for adaptive grid calculations. Mesh adaption, repartitioning, processor assignment, and remapping are critical components of the framework that must be accomplished rapidly and efficiently so as not to cause a significant overhead to the numerical simulation. A data redistribution model is also presented that predicts the remapping cost on the SP2. This model is required to determine whether the gain from a balanced workload distribution offsets the cost of data movement. Results presented in this paper demonstrate that PLUM is an effective dynamic load balancing strategy which remains viable on a large number of processors.
Achieving high sustained performance in an unstructured mesh CFD application
Keyes, D E; Anderson, W K; Gropp, W D; Kaushik, D K; Smith, B F
1999-12-10
This paper highlights a three-year project by an interdisciplinary team on a legacy F77 computational fluid dynamics code, with the aim of demonstrating that implicit unstructured grid simulations can execute at rates not far from those of explicit structured grid codes, provided attention is paid to data motion complexity and the reuse of data positioned at the levels of the memory hierarchy closest to the processor, in addition to traditional operation count complexity. The demonstration code is from NASA and the enabling parallel hardware and (freely available) software toolkit are from DOE, but the resulting methodology should be broadly applicable, and the hardware limitations exposed should allow programmers and vendors of parallel platforms to focus with greater encouragement on sparse codes with indirect addressing. This snapshot of ongoing work shows a performance of 15 microseconds per degree of freedom to steady-state convergence of Euler flow on a mesh with 2.8 million vertices using 3072 dual-processor nodes of ASCI Red, corresponding to a sustained floating-point rate of 0.227 Tflop/s.
Recent Improvements in Aerodynamic Design Optimization on Unstructured Meshes
NASA Technical Reports Server (NTRS)
Nielsen, Eric J.; Anderson, W. Kyle
2000-01-01
Recent improvements in an unstructured-grid method for large-scale aerodynamic design are presented. Previous work had shown such computations to be prohibitively long in a sequential processing environment. Also, robust adjoint solutions and mesh movement procedures were difficult to realize, particularly for viscous flows. To overcome these limiting factors, a set of design codes based on a discrete adjoint method is extended to a multiprocessor environment using a shared memory approach. A nearly linear speedup is demonstrated, and the consistency of the linearizations is shown to remain valid. The full linearization of the residual is used to precondition the adjoint system, and a significantly improved convergence rate is obtained. A new mesh movement algorithm is implemented and several advantages over an existing technique are presented. Several design cases are shown for turbulent flows in two and three dimensions.
Computational and methodological developments towards 3D full waveform inversion
NASA Astrophysics Data System (ADS)
Etienne, V.; Virieux, J.; Hu, G.; Jia, Y.; Operto, S.
2010-12-01
Full waveform inversion (FWI) is one of the most promising techniques for seismic imaging. It relies on a formalism taking into account every piece of information contained in the seismic data as opposed to more classical techniques such as travel time tomography. As a result, FWI is a high resolution imaging process able to reach a spatial accuracy equal to half a wavelength. FWI is based on a local optimization scheme and therefore the main limitation concerns the starting model which has to be closed enough to the real one in order to converge to the global minimum. Another counterpart of FWI is the required computational resources when considering models and frequencies of interest. The task becomes even more tremendous when one tends to perform the inversion using the elastic equation instead of using the acoustic approximation. This is the reason why until recently most studies were limited to 2D cases. In the last few years, due to the increase of the available computational power, FWI has focused a lot of interests and continuous efforts towards inversion of 3D models, leading to remarkable applications up to the continental scale. We investigate the computational burden induced by FWI in 3D elastic media and propose some strategic features leading to the reduction of the numerical cost while providing a great flexibility in the inversion parametrization. First, in order to release the memory requirements, we developed our FWI algorithm in the frequency domain and take benefit of the wave-number redundancy in the seismic data to process a quite reduced number of frequencies. To do so, we extract frequency solutions from time marching techniques which are efficient for 3D structures. Moreover, this frequency approach permits a multi-resolution strategy by proceeding from low to high frequencies: the final model at one frequency is used as the starting model for the next frequency. This procedure overcomes partially the non-linear behavior of the inversion
Fabrication of 3D Silicon Sensors
Kok, A.; Hansen, T.E.; Hansen, T.A.; Lietaer, N.; Summanwar, A.; Kenney, C.; Hasi, J.; Da Via, C.; Parker, S.I.; /Hawaii U.
2012-06-06
Silicon sensors with a three-dimensional (3-D) architecture, in which the n and p electrodes penetrate through the entire substrate, have many advantages over planar silicon sensors including radiation hardness, fast time response, active edge and dual readout capabilities. The fabrication of 3D sensors is however rather complex. In recent years, there have been worldwide activities on 3D fabrication. SINTEF in collaboration with Stanford Nanofabrication Facility have successfully fabricated the original (single sided double column type) 3D detectors in two prototype runs and the third run is now on-going. This paper reports the status of this fabrication work and the resulted yield. The work of other groups such as the development of double sided 3D detectors is also briefly reported.
NASA Astrophysics Data System (ADS)
Disch, C.
2014-09-01
Mobile surveillance systems are used to find lost radioactive sources and possible nuclear threats in urban areas. The REWARD collaboration [1] aims to develop such a complete radiation monitoring system that can be installed in mobile or stationary setups across a wide area. The scenarios include nuclear terrorism threats, lost radioactive sources, radioactive contamination and nuclear accidents. This paper will show the performance capabilities of the REWARD system in different scnarios. The results include both Monte Carlo simulations as well as neutron and gamma-ray detection performances in terms of efficiency and nuclide identification. The outcomes of several radiation mapping survey with the entire REWARD system will also be presented.
NASA Astrophysics Data System (ADS)
Fathi Azarkhavarani, M. E.; Hosseini Abardeh, R.; Rahmani, M.
2016-11-01
In this study a new approach for radiation heat flux calculations by coupling the discrete ordinates method with the Leckner global model is introduced. The aim is to analyze the radiative heat transfer problem within a three-dimensional enclosure filled with non-gray gas mixture of {H}2{O} and {C}{O}2. A computer code developed by this approach is applied to radiative calculations in three groups of well-known test cases published previously; considering homogeneous and inhomogeneous isothermal and non-isothermal participating media. All results are compared with well-known calculations based on statistical narrow band model. Also a new series of predictions for a medium with non-black walls and various mixture of {H}2{O} and {C}{O}2 is performed to demonstrate the applicability of the Leckner model. The effect of different compositions of {H}2{O} and {C}{O}2 on the radiative transfer within modern combustors is also examined. Based on the results obtained, it is believed that the discrete ordinates method coupled with the Leckner global model despite of its inherent simplicity and low computational cost is sufficiently accurate. For its convenient use, this method is suitable for a wide range of engineering calculations of participating media as well as for its link to previously written computational fluid dynamics codes.
Chiu, Jui-Yuan Christine
2014-04-10
This project focuses on cloud-radiation processes in a general three-dimensional cloud situation, with particular emphasis on cloud optical depth and effective particle size. The proposal has two main parts. Part one exploits the large number of new wavelengths offered by the Atmospheric Radiation Measurement (ARM) zenith-pointing ShortWave Spectrometer (SWS), to develop better retrievals not only of cloud optical depth but also of cloud particle size. We also take advantage of the SWS’ high sampling resolution to study the “twilight zone” around clouds where strong aerosol-cloud interactions are taking place. Part two involves continuing our cloud optical depth and cloud fraction retrieval research with ARM’s 2-channel narrow vield-of-view radiometer and sunphotometer instrument by, first, analyzing its data from the ARM Mobile Facility deployments, and second, making our algorithms part of ARM’s operational data processing.
2001-03-01
Radiotherapy Treatment Planning Tools Collaborative Working Group (Tech. Report 9 1-1, Ira Kalet, Ph.D., Radiation Oncology Department RC-08, University...acceptable. D. Post-Implant Dosimetric Analysis. 1. Post-Implant Treatment Plan: A CT scan will be preformed according to protocol following the implant...feature of the data or QA evaluation for that and dosimetric data for treatment planning and verification, case. Entities in this set include those
NASA Technical Reports Server (NTRS)
1997-01-01
The two hills in the distance, approximately one to two kilometers away, have been dubbed the 'Twin Peaks' and are of great interest to Pathfinder scientists as objects of future study. 3D glasses are necessary to identify surface detail. The white areas on the left hill, called the 'Ski Run' by scientists, may have been formed by hydrologic processes.
The IMP is a stereo imaging system with color capability provided by 24 selectable filters -- twelve filters per 'eye.
Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right
NASA Astrophysics Data System (ADS)
Fung, Y. C.
1995-05-01
This conference on physiology and function covers a wide range of subjects, including the vasculature and blood flow, the flow of gas, water, and blood in the lung, the neurological structure and function, the modeling, and the motion and mechanics of organs. Many technologies are discussed. I believe that the list would include a robotic photographer, to hold the optical equipment in a precisely controlled way to obtain the images for the user. Why are 3D images needed? They are to achieve certain objectives through measurements of some objects. For example, in order to improve performance in sports or beauty of a person, we measure the form, dimensions, appearance, and movements.
NASA Technical Reports Server (NTRS)
1992-01-01
Ames Research Center research into virtual reality led to the development of the Convolvotron, a high speed digital audio processing system that delivers three-dimensional sound over headphones. It consists of a two-card set designed for use with a personal computer. The Convolvotron's primary application is presentation of 3D audio signals over headphones. Four independent sound sources are filtered with large time-varying filters that compensate for motion. The perceived location of the sound remains constant. Possible applications are in air traffic control towers or airplane cockpits, hearing and perception research and virtual reality development.
Conservative multizonal interface algorithm for the 3-D Navier-Stokes equations
NASA Technical Reports Server (NTRS)
Klopfer, G. H.; Molvik, G. A.
1991-01-01
A conservative zonal interface algorithm using features of both structured and unstructured mesh CFD technology is presented. The flow solver within each of the zones is based on structured mesh CFD technology. The interface algorithm was implemented into two three-dimensional Navier-Stokes finite volume codes and was found to yield good results.
Liou, Kuo-Nan; Ou, S. C.; Gu, Y.; Takano, Y.
2016-02-22
+ b ln(IWC) + c ((ln(IWC))2, where a, b, and c are fitting coefficients and are functions of three regions. We demonstrated that this correlation can be effectively incorporated in GCMs and climate models that predict IWC - a significant advance in ice microphysics parameterization for interactive cloud-radiation analysis and feedback. Substantial July mean differences are shown in the OLR (W/m2) and precipitation (mm/day) patterns between UCLA GCM simulations based on Des determined from the De-IWC correlations and the control run using a fixed ice crystal size. Third, in order to improve the computation of spectral radiative transfer processes in the WRF model, we developed a consistent and efficient radiation scheme that can better resolve the spectral bands, determine the cloud optical properties, and provide more reliable and accurate radiative heating fields. In the newly developed radiation module, we have implemented in WRF a modified and improved version referred to as the Fu-Liou-Gu scheme, which includes a combination of delta-four-stream and delta-two-stream approximations for solar and IR flux calculations, respectively. This combination has been proven to be computationally efficient and at the same time to produce a high degree of accuracy. The incorporation of nongray gaseous absorption in multiple scattering atmospheres was based on the correlated k-distribution method. The solar and IR spectra are divided into 6 and 12 bands, respectively, according to the location of absorption bands of H2O, CO2, O3, CH4, N2O, and CFCs. We further included absorption by the water vapor continuum and a number of minor absorbers in the solar spectrum leading to an additional absorption of solar flux in a clear atmosphere on the order of 1-3 W/m2. Additionally, we incorporated the ice microphysics parameterization that includes an interactive mean effective ice crystal size in association with radiation parameterizations. The Fu-Liou-Gu scheme is an ideal tool for the
NASA Astrophysics Data System (ADS)
Davis, A. B.; Qu, Z.; Emde, C.; Xu, F.; Marshak, A.
2013-12-01
Although the Glory satellite mission failed at launch, the atmospheric observation strategy implemented in its Aerosol Polarization Sensor (APS) is alive and well since it is at least possible that another one will be built and launched. This strategy is based on APS's along-track scanning spectro-polarimetric measurement system that captures the three main Stokes vector elements (I,Q,U) at a large number (>200) viewing directions for 9 wavelengths emanating from a single pixel that is ~7 km in diameter at nadir and stretches into a ~7 x 20 km^2 ellipse at the most oblique views to be considered (~70 degrees). Two cloud cameras (CCs) were also onboard Glory to provide spatial context. If the relatively large APS footprint is cloud-free or fully-cloudy, then a 1D vector radiative transfer (RT) model is adequate for predicting the APS signals and, upon iteration over its input parameters, aerosol and cloud property retrievals are expected to be of high quality. And this level of accuracy is indeed required to make a real breakthrough in climate modeling where the radiative properties of aerosols and clouds remain one of the main sources of uncertainty. However, the CCs will often show that the APS's field-of-view is a spatially complex cloud scene, but where we are mostly interested in the ambient aerosols. Moreover, it is precisely these aerosols in contact with clouds that will influence their microphysical and optical properties, leading to the manifold indirect aerosol effects on the climate system that need to be far better understood in order to improve their representation in climate models. Therefore, the research presented here addresses the challenge of characterizing simultaneously aerosols and clouds in a single APS observation. Access to polarization can, at least in principle, be used to separate clouds and aerosols using the cloud-bow directions that will often be sampled by APS. In practice, however, we need to assess the extent of 3D polarized RT
Cevidanes, Lucia; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael
2009-01-01
This paper discusses the development of methods for computer-aided jaw surgery. Computer-aided jaw surgery allows us to incorporate the high level of precision necessary for transferring virtual plans into the operating room. We also present a complete computer-aided surgery (CAS) system developed in close collaboration with surgeons. Surgery planning and simulation include construction of 3D surface models from Cone-beam CT (CBCT), dynamic cephalometry, semi-automatic mirroring, interactive cutting of bone and bony segment repositioning. A virtual setup can be used to manufacture positioning splints for intra-operative guidance. The system provides further intra-operative assistance with the help of a computer display showing jaw positions and 3D positioning guides updated in real-time during the surgical procedure. The CAS system aids in dealing with complex cases with benefits for the patient, with surgical practice, and for orthodontic finishing. Advanced software tools for diagnosis and treatment planning allow preparation of detailed operative plans, osteotomy repositioning, bone reconstructions, surgical resident training and assessing the difficulties of the surgical procedures prior to the surgery. CAS has the potential to make the elaboration of the surgical plan a more flexible process, increase the level of detail and accuracy of the plan, yield higher operative precision and control, and enhance documentation of cases. Supported by NIDCR DE017727, and DE018962 PMID:20816308
NASA Technical Reports Server (NTRS)
1997-01-01
An area of rocky terrain near the landing site of the Sagan Memorial Station can be seen in this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. This image is part of a 3D 'monster' panorama of the area surrounding the landing site.
Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.
Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right
Ciernik, I Frank; Brown, Derek W; Schmid, Daniel; Hany, Thomas; Egli, Peter; Davis, J Bernard
2007-02-01
Volumetric assessment of PET signals becomes increasingly relevant for radiotherapy (RT) planning. Here, we investigate the utility of 18F-choline PET signals to serve as a structure for semi-automatic segmentation for forward treatment planning of prostate cancer. 18F-choline PET and CT scans of ten patients with histologically proven prostate cancer without extracapsular growth were acquired using a combined PET/CT scanner. Target volumes were manually delineated on CT images using standard software. Volumes were also obtained from 18F-choline PET images using an asymmetrical segmentation algorithm. PTVs were derived from CT 18F-choline PET based clinical target volumes (CTVs) by automatic expansion and comparative planning was performed. As a read-out for dose given to non-target structures, dose to the rectal wall was assessed. Planning target volumes (PTVs) derived from CT and 18F-choline PET yielded comparable results. Optimal matching of CT and 18F-choline PET derived volumes in the lateral and cranial-caudal directions was obtained using a background-subtracted signal thresholds of 23.0+/-2.6%. In antero-posterior direction, where adaptation compensating for rectal signal overflow was required, optimal matching was achieved with a threshold of 49.5+/-4.6%. 3D-conformal planning with CT or 18F-choline PET resulted in comparable doses to the rectal wall. Choline PET signals of the prostate provide adequate spatial information amendable to standardized asymmetrical region growing algorithms for PET-based target volume definition for external beam RT.
Dumane, V; Knoll, M; Green, S; Bakst, R; Hunt, M; Steinberger, E
2014-06-01
Purpose: To predict the dosimetric gain of VMAT over 3D for the treatment ofchestwall/IMN/supraclavicular nodes using geometric parameters acquired during simulation Methods: CT scans for 20 left and 20 right sided patients were retrospectively analyzed toobtain percent ipsilateral lung volume included in the PWT and supraclavicular fields, central lung depth (CLD), maximum lung depth (MLD), separation, chestwall concavity (defined here as the product of CLD and separation) and the maximum heart depth (MHD). VMAT, PWT and P/E plans were done for each case. The ipsilateral lung V20 Gy and mean, total lung V20 Gy and mean, heart V25 Gy and mean were noted for each plan. Correlation coefficients were obtained and linear regression models were built using data from the above training set of patients and then tested on 4 new patients. Results: The decrease in ipsilateral lung V20 Gy, total lung V20 Gy, ipsilateral lung mean and total lung mean with VMAT over PWT significantly (p<0.05) correlated with the percent volume of ipsilateral lung included in the PWT and supraclavicular fields with correlation coefficient values of r = 0.83, r = 0.77, r = 0.78 and r = 0.75 respectively. Significant correlations were also found between MHD and the decrease in heart V25 Gy and mean of r = 0.77 and r = 0.67 respectively. Dosimetric improvement with VMAT over P/E plans showed no correlation to any of the geometric parameters investigated in this study. The dosimetric gain predicted for the 4 test cases by the linear regression models given their respective percent ipsilateral lung volumes fell within the 95% confidence intervals around the best regression fit. Conclusion: The percent ipsilateral lung volume appears to be a strong predictor of the dosimetric gain on using VMAT over PWT apriori.
NASA Technical Reports Server (NTRS)
Davis, Anthony B.; Garay, Michael J.; Xu, Feng; Qu, Zheng; Emde, Claudia
2013-01-01
When observing a spatially complex mix of aerosols and clouds in a single relatively large field-of-view, nature entangles their signals non-linearly through polarized radiation transport processes that unfold in the 3D position and direction spaces. In contrast, any practical forward model in a retrieval algorithm will use only 1D vector radiative transfer (vRT) in a linear mixing technique. We assess the difference between the observed and predicted signals using synthetic data from a high-fidelity 3D vRT model with clouds generated using a Large Eddy Simulation model and an aerosol climatology. We find that this difference is signal--not noise--for the Aerosol Polarimetry Sensor (APS), an instrument developed by NASA. Moreover, the worst case scenario is also the most interesting case, namely, when the aerosol burden is large, hence hase the most impact on the cloud microphysics and dynamics. Based on our findings, we formulate a mitigation strategy for these unresolved cloud adjacency effects assuming that some spatial information is available about the structure of the clouds at higher resolution from "context" cameras, as was planned for NASA's ill-fated Glory mission that was to carry the APS but failed to reach orbit. Application to POLDER (POLarization and Directionality of Earth Reflectances) data from the period when PARASOL (Polarization and Anisotropy of Reflectances for Atmospheric Sciences coupled with Observations from a Lidar) was in the A-train is briefly discussed.
Caspi, S.; Helm, M.; Laslett, L.J.
1991-03-30
We have developed an harmonic representation for the three dimensional field components within the windings of accelerator magnets. The form by which the field is presented is suitable for interfacing with other codes that make use of the 3D field components (particle tracking and stability). The field components can be calculated with high precision and reduced cup time at any location (r,{theta},z) inside the magnet bore. The same conductor geometry which is used to simulate line currents is also used in CAD with modifications more readily available. It is our hope that the format used here for magnetic fields can be used not only as a means of delivering fields but also as a way by which beam dynamics can suggest correction to the conductor geometry. 5 refs., 70 figs.
Su, M; Sura, S
2014-06-01
Purpose: To evaluate dosimetric impact of two axillary nodes (AX) boost techniques: (1) posterior-oblique optimized field boost (POB), (2) traditional posterior-anterior boost (PAB) with field optimization (O-PAB), for a postmastectomy breast patient with positive axillary lymph nodes. Methods: Five patients, 3 left and 2 right chest walls, were included in this study. All patients were simulated in 5mm CT slice thickness. Supraclavicular (SC) and level I/II/III AX were contoured based on the RTOG atlas guideline. Five treatment plans, (1) tangential chest wall, (2) oblique SC including AX, (3) PAB, O-PAB and POB, were created for each patient. Three plan sums (PS) were generated by sum one of (3) plan with plan (1) and (2). The field optimization was done through PS dose distribution, which included a field adjustment, a fractional dose, a calculation location and a gantry angle selection for POB. A dosimetric impact was evaluated by comparing a SC and AX coverage, a PS maximum dose, an irradiated area percentage volume received dose over 105% prescription dose (V105), an ipsi-laterial mean lung dose (MLD), an ipsi-laterial mean humeral head dose (MHHD), a mean heart dose (MHD) (for left case only) and their DVH amount these three technique. Results: O-PAB, POB and PAB dosimetric results showed that there was no significant different on SC and AX coverage (p>0.43) and MHD (p>0.16). The benefit of sparing lung irradiation from PAB to O-PAB to POB was significant (p<0.004). PAB showed a highest PS maximum dose (p<0.005), V105 (p<0.023) and MLD (compared with OPAB, p=0.055). MHHD showed very sensitive to the patient arm positioning and anatomy. O-PAB convinced a lower MHHD than PAB (p=0.03). Conclusion: 3D CT contouring plays main role in accuracy radiotherapy. Dosimetric advantage of POB and O-PAB was observed for a better normal tissue irradiation sparing.
Tol-Geerdink, Julia J. van . E-mail: J.vanTol@rther.umcn.nl; Stalmeier, Peep F.M.; Pasker-de Jong, Pieternel C.M.; Huizenga, Henk; Lin, Emile N.J.T. van; Schimmel, Erik C.; Leer, Jan Willem; Daal, Willem A.J. van
2006-02-01
Purpose: A higher radiation dose is believed to result in a larger probability of tumor control and a higher risk of side effects. To make an evidence-based choice of dose, the relation between dose and outcome needs to be known. This study focuses on the dose-response relation for prostate cancer. Methods and Materials: A systematic review was carried out on the literature from 1990 to 2003. From the selected studies, the radiation dose, the associated 5-year survival, 5-year bNED (biochemical no evidence of disease), acute and late gastrointestinal (GI) and genitourinary (GU) morbidity Grade 2 or more, and sexual dysfunction were extracted. With logistic regression models, the relation between dose and outcome was described. Results: Thirty-eight studies met our criteria, describing 87 subgroups and involving up to 3000 patients per outcome measure. Between the (equivalent) dose of 70 and 80 Gy, various models estimated an increase in 5-year survival (ranging from 10% to 11%), 5-year bNED for low-risk patients (5-7%), late GI complications (12-16%), late GU complications (8-10%), and erectile dysfunction (19-24%). Only for the overall 5-year bNED, results were inconclusive (range, 0-18%). Conclusions: The data suggest a relationship between dose and outcome measures, including survival. However, the strength of these conclusions is limited by the sometimes small number of studies, the incompleteness of the data, and above all, the correlational nature of the data. Unambiguous proof for the dose-response relationships can, therefore, only be obtained by conducting randomized trials.
NASA Technical Reports Server (NTRS)
Scott Carnell, Lisa A. (Inventor)
2017-01-01
An apparatus and method that utilizes a radiation source and a simulated microgravity to provide combined stressors. The response of cells/bacteria/viruses and/or other living matter to the combined stressors can be evaluated to predict the effects of extended space missions. The apparatus and method can also be utilized to study diseases and to develop new treatments and vaccinations.
NASA Astrophysics Data System (ADS)
Hayek, W.; Asplund, M.; Carlsson, M.; Trampedach, R.; Collet, R.; Gudiksen, B. V.; Hansteen, V. H.; Leenaarts, J.
2010-07-01
Aims: We present the implementation of a radiative transfer solver with coherent scattering in the new BIFROST code for radiative magneto-hydrodynamical (MHD) simulations of stellar surface convection. The code is fully parallelized using MPI domain decomposition, which allows for large grid sizes and improved resolution of hydrodynamical structures. We apply the code to simulate the surface granulation in a solar-type star, ignoring magnetic fields, and investigate the importance of coherent scattering for the atmospheric structure. Methods: A scattering term is added to the radiative transfer equation, requiring an iterative computation of the radiation field. We use a short-characteristics-based Gauss-Seidel acceleration scheme to compute radiative flux divergences for the energy equation. The effects of coherent scattering are tested by comparing the temperature stratification of three 3D time-dependent hydrodynamical atmosphere models of a solar-type star: without scattering, with continuum scattering only, and with both continuum and line scattering. Results: We show that continuum scattering does not have a significant impact on the photospheric temperature structure for a star like the Sun. Including scattering in line-blanketing, however, leads to a decrease of temperatures by about 350 K below log10 τ5000 ⪉ -4. The effect is opposite to that of 1D hydrostatic models in radiative equilibrium, where scattering reduces the cooling effect of strong LTE lines in the higher layers of the photosphere. Coherent line scattering also changes the temperature distribution in the high atmosphere, where we observe stronger fluctuations compared to a treatment of lines as true absorbers.
Lagerlöf, Jakob H.; Kindblom, Jon; Bernhardt, Peter
2014-04-15
Purpose: Oxygen distribution models have been used to analyze the influences of oxygen tensions on tissue response after radiotherapy. These distributions are often generated assuming constant oxygen tension in the blood vessels. However, as red blood cells progress through the vessels, oxygen is continuously released into the plasma and the surrounding tissue, resulting in longitudinally varying oxygen levels in the blood vessels. In the present study, the authors investigated whether a tumor oxygenation model that incorporated longitudinally varying oxygen levels would provide different predictions of necrotic fractions and radiosensitivity compared to commonly used models with a constant oxygen pressure. Methods: Our models simulated oxygen diffusion based on a Green's function approach and oxygen consumption according to the Michaelis-Menten equation. The authors constructed tumor models with different vascular fractions (VFs), from which they generated depth oxygenation curves and a look-up table of oxygen pressure gradients. The authors evaluated models of spherical tumors of various sizes, from 1 to 10{sup 4} mg. The authors compared the results from a model with constant vessel oxygen (CVO) pressure to those from models with longitudinal variations in oxygen saturation and either a constant VF (CVF) or variable VF (VVF) within the tumor tissue. The authors monitored the necrotic fractions, defined as tumor regions with an oxygen pressure below 1 mmHg. Tumor radiation sensitivity was expressed as D{sub 99,} the homogeneous radiation dose required for a tumor control probability of 0.99. Results: In the CVO saturation model, no necrosis was observed, and decreasing the VF could only decrease the D{sub 99} by up to 10%. Furthermore, the D{sub 99} vs VF dependence was similar for different tumor masses. Compared to the CVO model, the extended CVF and VVF models provided clearly different results, including pronounced effects of VF and tumor size on the necrotic
NASA Astrophysics Data System (ADS)
Moortgat, J.; Firoozabadi, A.
2013-12-01
Most problems of interest in hydrogeology and subsurface energy resources involve complex heterogeneous geological formations. Such domains are most naturally represented in numerical reservoir simulations by unstructured computational grids. Finite element methods are a natural choice to describe fluid flow on unstructured meshes, because the governing equations can be readily discretized for any grid-element geometry. In this work, we consider the challenging problem of fully compositional three-phase flow in 3D unstructured grids, discretized by tetrahedra, prisms, or hexahedra, and compare to simulations on 3D structured grids. We employ a combination of mixed hybrid finite element methods to solve for the pressure and flux fields in a fractional flow formulation, and higher-order discontinuous Galerkin methods for the mass transport equations. These methods are well suited to simulate flow in heterogeneous and fractured reservoirs, because they provide a globally continuous pressure and flux field, while allowing for sharp discontinuities in the phase properties, such as compositions and saturations. The increased accuracy from using higher-order methods improves the modeling of highly non-linear flow, such as gravitational and viscous fingering. We present several numerical examples to study convergence rates and the (lack of) sensitivity to gridding/mesh orientation, and mesh quality. These examples consider gravity depletion, water and gas injection in oil saturated subsurface reservoirs with species exchange between up to three fluid phases. The examples demonstrate the wide applicability of our chosen finite element methods in the study of challenging multiphase flow problems in porous, geometrically complex, subsurface media.
3D Printed Terahertz Focusing Grating Couplers
NASA Astrophysics Data System (ADS)
Jahn, David; Weidenbach, Marcel; Lehr, Jannik; Becker, Leonard; Beltrán-Mejía, Felipe; Busch, Stefan F.; Balzer, Jan C.; Koch, Martin
2017-02-01
We have designed, constructed and characterized a grating that focuses electromagnetic radiation at specific frequencies out of a dielectric waveguide. A simple theoretical model predicts the focusing behaviour of these chirped gratings, along with numerical results that support our assumptions and improved the grating geometry. The leaky waveguide was 3D printed and characterized at 120 GHz demonstrating its potential for manipulating terahertz waves.
NASA Astrophysics Data System (ADS)
Kühmstedt, Peter; Bräuer-Burchardt, Christian; Munkelt, Christoph; Heinze, Matthias; Palme, Martin; Schmidt, Ingo; Hintersehr, Josef; Notni, Gunther
2007-09-01
Here a new set-up of a 3D-scanning system for CAD/CAM in dental industry is proposed. The system is designed for direct scanning of the dental preparations within the mouth. The measuring process is based on phase correlation technique in combination with fast fringe projection in a stereo arrangement. The novelty in the approach is characterized by the following features: A phase correlation between the phase values of the images of two cameras is used for the co-ordinate calculation. This works contrary to the usage of only phase values (phasogrammetry) or classical triangulation (phase values and camera image co-ordinate values) for the determination of the co-ordinates. The main advantage of the method is that the absolute value of the phase at each point does not directly determine the coordinate. Thus errors in the determination of the co-ordinates are prevented. Furthermore, using the epipolar geometry of the stereo-like arrangement the phase unwrapping problem of fringe analysis can be solved. The endoscope like measurement system contains one projection and two camera channels for illumination and observation of the object, respectively. The new system has a measurement field of nearly 25mm × 15mm. The user can measure two or three teeth at one time. So the system can by used for scanning of single tooth up to bridges preparations. In the paper the first realization of the intraoral scanner is described.
NASA Technical Reports Server (NTRS)
2004-01-01
This 3-D, microscopic imager mosaic of a target area on a rock called 'Diamond Jenness' was taken after NASA's Mars Exploration Rover Opportunity ground into the surface with its rock abrasion tool for a second time.
Opportunity has bored nearly a dozen holes into the inner walls of 'Endurance Crater.' On sols 177 and 178 (July 23 and July 24, 2004), the rover worked double-duty on Diamond Jenness. Surface debris and the bumpy shape of the rock resulted in a shallow and irregular hole, only about 2 millimeters (0.08 inch) deep. The final depth was not enough to remove all the bumps and leave a neat hole with a smooth floor. This extremely shallow depression was then examined by the rover's alpha particle X-ray spectrometer.
On Sol 178, Opportunity's 'robotic rodent' dined on Diamond Jenness once again, grinding almost an additional 5 millimeters (about 0.2 inch). The rover then applied its Moessbauer spectrometer to the deepened hole. This double dose of Diamond Jenness enabled the science team to examine the rock at varying layers. Results from those grindings are currently being analyzed.
The image mosaic is about 6 centimeters (2.4 inches) across.
NASA Technical Reports Server (NTRS)
1997-01-01
Many prominent rocks near the Sagan Memorial Station are featured in this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. Wedge is at lower left; Shark, Half-Dome, and Pumpkin are at center. Flat Top, about four inches high, is at lower right. The horizon in the distance is one to two kilometers away.
Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.
Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right
Shi, Li-Wan; Lai, You-Qun; Lin, Qin; Ha, Hui-Ming; Fu, Li-Rong
2015-07-01
Flattening filter free (FFF) may affect outcome measures of radiotherapy. The objective of this study is to compare the dosimetric parameters in three types of radiotherapy plans, three-dimensional conformal radiation therapy (3D-CRT), intensity-modulated radiation therapy (IMRT), and volumetric modulated arc therapy (VMAT), with or without the flattening filter (FF), developed for the treatment of metastatic brain tumors from non-small cell lung cancer (NSCLC). From July 2013 to October 2013, 3D-CRT, IMRT, and VMAT treatment plans were designed using 6 MV and 10 MV, with and without FF, for 10 patients with brain metastasis from NSCLC. The evaluation of the treatment plans included homogeneity index (HI), conformity index (CI), monitor units (MU), mean dose (Dmean), treatment time, and the influence of FFF on volumes. There was no difference in CI or HI between FFF and FF models with 3D-CRT, IMRT, and VMAT plans. At 6 MV, a lower Dmean was seen in the FFF model of 3D-CRT and in the VMAT plan at 10 MV. In the IMRT 6 MV, IMRT 10 MV, and VMAT 10 MV plans, higher MUs were seen in the FFF models. FFF treatments are similar in quality to FF plans, generally lead to more monitor units, and are associated with shorter treatment times. FFF plans ranked by the order of superiority in terms of a time advantage are VMAT, 3D-CRT, and IMRT.
Vicini, Frank; Winter, Kathryn; Wong, John
2010-07-15
Purpose: This prospective study (Radiation Therapy Oncology Group 0319) examines the use of three-dimensional conformal external beam radiotherapy (3D-CRT) to deliver accelerated partial breast irradiation (APBI). Initial data on efficacy and toxicity are presented. Methods and Materials: Patients with Stage I or II breast cancer with lesions {<=}3 cm, negative margins and with {<=}3 positive nodes were eligible. The 3D-CRT was 38.5 Gy in 3.85 Gy/fraction delivered 2x/day. Ipsilateral breast, ipsilateral nodal, contralateral breast, and distant failure (IBF, INF, CBF, DF) were estimated using the cumulative incidence method. Mastectomy-free, disease-free, and overall survival (MFS, DFS, OS) were recorded. The National Cancer Institute Common Terminology Criteria for Adverse Events, version 3, was used to grade acute and late toxicity. Results: Fifty-eight patients were entered and 52 patients are eligible and evaluable for efficacy. The median age of patients was 61 years with the following characteristics: 46% tumor size <1 cm; 87% invasive ductal histology; 94% American Joint Committee on Cancer Stage I; 65% postmenopausal; 83% no chemotherapy; and 71% with no hormone therapy. Median follow-up is 4.5 years (1.7-4.8). Four-year estimates (95% CI) of efficacy are: IBF 6% (0-12%) [4% within field (0-9%)]; INF 2% (0-6%); CBF 0%; DF 8% (0-15%); MFS 90% (78-96%); DFS 84% (71-92%); and OS 96% (85-99%). Only two (4%) Grade 3 toxicities were observed. Conclusions: Initial efficacy and toxicity using 3D-CRT to deliver APBI appears comparable to other experiences with similar follow-up. However, additional patients, further follow-up, and mature Phase III data are needed to evaluate the extent of application, limitations, and value of this particular form of APBI.
Nuclear 3D organization and radiosensitivity
NASA Astrophysics Data System (ADS)
Eidelman, Y. A.; Slanina, S. V.; Aleshchenko, A. V.; Sen’ko, O. V.; Kononkova, A. D.; Andreev, S. G.
2017-01-01
Current mechanisms of radiation-induced chromosomal aberration (CA) formation suggest misrepair of chromosomal lesions being in spatial proximity. In this case CAs have to depend on pattern of chromosomal contacts and on chromosome spatial organization in a cell nucleus. We were interested in whether variation of nucleus 3D organization results in difference of radiation induced CA formation frequency. Experimental data available do not provide information sufficient for definite conclusions. To have more deep insight in this issue we developed the biophysical modeling technique taking into account different levels of chromosome/nuclear organization and radiation damage of DNA and chromosomes. Computer experiments on gamma irradiation were carried out for two types of cells with different 3D organization of nuclei, preferentially peripheral and internal. CA frequencies were found to depend on spatial positioning of chromosomes within a nucleus which determines a pattern of interchromosomal contacts. For individual chromosomes this effect can be more pronounced than for genome averaged. Since significant part of aberrations, for example dicentrics, results in cell death, the proposed technique is capable of evaluating radiosensitivity of cells, both normal and cancer, with the incorporation of 3D genome information. This predictive technology allows to reduce uncertainties of prognosis of biological effects of radiation compared to phenomenological methods and may have variety of biomedical applications, in particular, in cancer radiation therapy.
NASA Technical Reports Server (NTRS)
2009-01-01
wavelengths. Since the amount of the wavelength shift is related to the speed of motion, one can determine how fast the debris are moving in either direction. Because Cas A is the result of an explosion, the stellar debris is expanding radially outwards from the explosion center. Using simple geometry, the scientists were able to construct a 3-D model using all of this information. A program called 3-D Slicer modified for astronomical use by the Astronomical Medicine Project at Harvard University in Cambridge, Mass. was used to display and manipulate the 3-D model. Commercial software was then used to create the 3-D fly-through.
The blue filaments defining the blast wave were not mapped using the Doppler effect because they emit a different kind of light synchrotron radiation that does not emit light at discrete wavelengths, but rather in a broad continuum. The blue filaments are only a representation of the actual filaments observed at the blast wave.
This visualization shows that there are two main components to this supernova remnant: a spherical component in the outer parts of the remnant and a flattened (disk-like) component in the inner region. The spherical component consists of the outer layer of the star that exploded, probably made of helium and carbon. These layers drove a spherical blast wave into the diffuse gas surrounding the star. The flattened component that astronomers were unable to map into 3-D prior to these Spitzer observations consists of the inner layers of the star. It is made from various heavier elements, not all shown in the visualization, such as oxygen, neon, silicon, sulphur, argon and iron.
High-velocity plumes, or jets, of this material are shooting out from the explosion in the plane of the disk-like component mentioned above. Plumes of silicon appear in the northeast and southwest, while those of iron are seen in the southeast and north. These jets were already known and Doppler velocity measurements have been made for these
NASA Astrophysics Data System (ADS)
Mediavilla, Evencio; Arribas, Santiago; Roth, Martin; Cepa-Nogué, Jordi; Sánchez, Francisco
2011-09-01
Preface; Acknowledgements; 1. Introductory review and technical approaches Martin M. Roth; 2. Observational procedures and data reduction James E. H. Turner; 3. 3D Spectroscopy instrumentation M. A. Bershady; 4. Analysis of 3D data Pierre Ferruit; 5. Science motivation for IFS and galactic studies F. Eisenhauer; 6. Extragalactic studies and future IFS science Luis Colina; 7. Tutorials: how to handle 3D spectroscopy data Sebastian F. Sánchez, Begona García-Lorenzo and Arlette Pécontal-Rousset.
Spherical 3D isotropic wavelets
NASA Astrophysics Data System (ADS)
Lanusse, F.; Rassat, A.; Starck, J.-L.
2012-04-01
Context. Future cosmological surveys will provide 3D large scale structure maps with large sky coverage, for which a 3D spherical Fourier-Bessel (SFB) analysis in spherical coordinates is natural. Wavelets are particularly well-suited to the analysis and denoising of cosmological data, but a spherical 3D isotropic wavelet transform does not currently exist to analyse spherical 3D data. Aims: The aim of this paper is to present a new formalism for a spherical 3D isotropic wavelet, i.e. one based on the SFB decomposition of a 3D field and accompany the formalism with a public code to perform wavelet transforms. Methods: We describe a new 3D isotropic spherical wavelet decomposition based on the undecimated wavelet transform (UWT) described in Starck et al. (2006). We also present a new fast discrete spherical Fourier-Bessel transform (DSFBT) based on both a discrete Bessel transform and the HEALPIX angular pixelisation scheme. We test the 3D wavelet transform and as a toy-application, apply a denoising algorithm in wavelet space to the Virgo large box cosmological simulations and find we can successfully remove noise without much loss to the large scale structure. Results: We have described a new spherical 3D isotropic wavelet transform, ideally suited to analyse and denoise future 3D spherical cosmological surveys, which uses a novel DSFBT. We illustrate its potential use for denoising using a toy model. All the algorithms presented in this paper are available for download as a public code called MRS3D at http://jstarck.free.fr/mrs3d.html
Modelling of river plume dynamics in Öre estuary (Baltic Sea) with Telemac-3D hydrodynamic model
NASA Astrophysics Data System (ADS)
Sokolov, Alexander
2016-04-01
The main property of river plumes is their buoyancy, fresh water discharged by rivers is less dense than the receiving, saline waters. To study the processes of plume formation in case of river discharge into a brackish estuary where salinity is low (3.5 - 5 psu) a three dimensional hydrodynamic model was applied to the Öre estuary in the Baltic Sea. This estuary is a small fjord-like bay in the north part of the Baltic Sea. Size of the bay is about 8 by 8 km with maximum depth of 35 metres. River Öre has a small average freshwater discharge of 35 m3/s. But in spring during snowmelt the discharge can be many times higher. For example, in April 2015 the discharge increased from 8 m3/s to 160 m3/s in 18 days. To study river plume dynamics a finite element based three dimensional baroclinic model TELEMAC - 3D is used. The TELEMAC modelling suite is developed by the National Laboratory of Hydraulics and Environment (LNHE) of Electricité de France (EDF). Modelling domain was approximated by an unstructured mesh with element size varies from 50 to 500 m. In vertical direction a sigma-coordinate with 20 layers was used. Open sea boundary conditions were obtained from the Baltic Sea model HIROMB-BOOS using COPERNICUS marine environment monitoring service. Comparison of modelling results with observations obtained by BONUS COCOA project's field campaign in Öre estuary in 2015 shows that the model plausible simulate river plume dynamics. Modelling of age of freshwater is also discussed. This work resulted from the BONUS COCOA project was supported by BONUS (Art 185), funded jointly by the EU and the Swedish Research Council Formas.
3D Elevation Program—Virtual USA in 3D
Lukas, Vicki; Stoker, J.M.
2016-04-14
The U.S. Geological Survey (USGS) 3D Elevation Program (3DEP) uses a laser system called ‘lidar’ (light detection and ranging) to create a virtual reality map of the Nation that is very accurate. 3D maps have many uses with new uses being discovered all the time.
Extra dimensions: 3D in PDF documentation
Graf, Norman A.
2011-01-11
Experimental science is replete with multi-dimensional information which is often poorly represented by the two dimensions of presentation slides and print media. Past efforts to disseminate such information to a wider audience have failed for a number of reasons, including a lack of standards which are easy to implement and have broad support. Adobe's Portable Document Format (PDF) has in recent years become the de facto standard for secure, dependable electronic information exchange. It has done so by creating an open format, providing support for multiple platforms and being reliable and extensible. By providing support for the ECMA standard Universal 3D (U3D) file format in its free Adobe Reader software, Adobe has made it easy to distribute and interact with 3D content. By providing support for scripting and animation, temporal data can also be easily distributed to a wide, non-technical audience. We discuss how the field of radiation imaging could benefit from incorporating full 3D information about not only the detectors, but also the results of the experimental analyses, in its electronic publications. In this article, we present examples drawn from high-energy physics, mathematics and molecular biology which take advantage of this functionality. Furthermore, we demonstrate how 3D detector elements can be documented, using either CAD drawings or other sources such as GEANT visualizations as input.
Extra dimensions: 3D in PDF documentation
Graf, Norman A.
2011-01-11
Experimental science is replete with multi-dimensional information which is often poorly represented by the two dimensions of presentation slides and print media. Past efforts to disseminate such information to a wider audience have failed for a number of reasons, including a lack of standards which are easy to implement and have broad support. Adobe's Portable Document Format (PDF) has in recent years become the de facto standard for secure, dependable electronic information exchange. It has done so by creating an open format, providing support for multiple platforms and being reliable and extensible. By providing support for the ECMA standard Universalmore » 3D (U3D) file format in its free Adobe Reader software, Adobe has made it easy to distribute and interact with 3D content. By providing support for scripting and animation, temporal data can also be easily distributed to a wide, non-technical audience. We discuss how the field of radiation imaging could benefit from incorporating full 3D information about not only the detectors, but also the results of the experimental analyses, in its electronic publications. In this article, we present examples drawn from high-energy physics, mathematics and molecular biology which take advantage of this functionality. Furthermore, we demonstrate how 3D detector elements can be documented, using either CAD drawings or other sources such as GEANT visualizations as input.« less
NASA Astrophysics Data System (ADS)
Buldyrev, S.; Davis, A.; Marshak, A.; Stanley, H. E.
2001-12-01
Two-stream radiation transport models, as used in all current GCM parameterization schemes, are mathematically equivalent to ``standard'' diffusion theory where the physical picture is a slow propagation of the diffuse radiation by Gaussian random walks. The space/time spread (technically, the Green function) of this diffusion process is described exactly by a Gaussian distribution; from the statistical physics viewpoint, this follows from the convergence of the sum of many (rescaled) steps between scattering events with a finite variance. This Gaussian picture follows directly from first principles (the radiative transfer equation) under the assumptions of horizontal uniformity and large optical depth, i.e., there is a homogeneous plane-parallel cloud somewhere in the column. The first-order effect of 3D variability of cloudiness, the main source of scattering, is to perturb the distribution of single steps between scatterings which, modulo the ``1-g'' rescaling, can be assumed effectively isotropic. The most natural generalization of the Gaussian distribution is the 1-parameter family of symmetric Lévy-stable distributions because the sum of many zero-mean random variables with infinite variance, but finite moments of order q < α (0 < α < 2), converge to them. It has been shown on heuristic grounds that for these Lévy-based random walks the typical number of scatterings is now (1-g)τ α for transmitted light. The appearance of a non-rational exponent is why this is referred to as ``anomalous'' diffusion. Note that standard/Gaussian diffusion is retrieved in the limit α = 2-. Lévy transport theory has been successfully used in the statistical physics literature to investigate a wide variety of systems with strongly nonlinear dynamics; these applications range from random advection in turbulent fluids to the erratic behavior of financial time-series and, most recently, self-regulating ecological systems. We will briefly survey the state
None
2016-07-12
This video provides an overview of the Sandia National Laboratories developed 3-D World Model Building capability that provides users with an immersive, texture rich 3-D model of their environment in minutes using a laptop and color and depth camera.
NASA Astrophysics Data System (ADS)
van Hecke, Martin; de Reus, Koen; Florijn, Bastiaan; Coulais, Corentin
2014-03-01
We present a class of elastic structures which exhibit collective buckling in 3D, and create these by a 3D printing/moulding technique. Our structures consist of cubic lattice of anisotropic unit cells, and we show that their mechanical properties are programmable via the orientation of these unit cells.
2013-10-30
This video provides an overview of the Sandia National Laboratories developed 3-D World Model Building capability that provides users with an immersive, texture rich 3-D model of their environment in minutes using a laptop and color and depth camera.
2013-10-01
Earth3D is a computer code designed to allow fast calculation of seismic rays and travel times through a 3D model of the Earth. LLNL is using this for earthquake location and global tomography efforts and such codes are of great interest to the Earth Science community.
NASA Technical Reports Server (NTRS)
1977-01-01
A market study of a proposed version of a 3-D eyetracker for initial use at NASA's Ames Research Center was made. The commercialization potential of a simplified, less expensive 3-D eyetracker was ascertained. Primary focus on present and potential users of eyetrackers, as well as present and potential manufacturers has provided an effective means of analyzing the prospects for commercialization.
NASA Astrophysics Data System (ADS)
Walsh, J. R.
2004-02-01
The Euro3D RTN is an EU funded Research Training Network to foster the exploitation of 3D spectroscopy in Europe. 3D spectroscopy is a general term for spectroscopy of an area of the sky and derives its name from its two spatial + one spectral dimensions. There are an increasing number of instruments which use integral field devices to achieve spectroscopy of an area of the sky, either using lens arrays, optical fibres or image slicers, to pack spectra of multiple pixels on the sky (``spaxels'') onto a 2D detector. On account of the large volume of data and the special methods required to reduce and analyse 3D data, there are only a few centres of expertise and these are mostly involved with instrument developments. There is a perceived lack of expertise in 3D spectroscopy spread though the astronomical community and its use in the armoury of the observational astronomer is viewed as being highly specialised. For precisely this reason the Euro3D RTN was proposed to train young researchers in this area and develop user tools to widen the experience with this particular type of data in Europe. The Euro3D RTN is coordinated by Martin M. Roth (Astrophysikalisches Institut Potsdam) and has been running since July 2002. The first Euro3D science conference was held in Cambridge, UK from 22 to 23 May 2003. The main emphasis of the conference was, in keeping with the RTN, to expose the work of the young post-docs who are funded by the RTN. In addition the team members from the eleven European institutes involved in Euro3D also presented instrumental and observational developments. The conference was organized by Andy Bunker and held at the Institute of Astronomy. There were over thirty participants and 26 talks covered the whole range of application of 3D techniques. The science ranged from Galactic planetary nebulae and globular clusters to kinematics of nearby galaxies out to objects at high redshift. Several talks were devoted to reporting recent observations with newly
NASA Astrophysics Data System (ADS)
Pezzaniti, J. Larry; Edmondson, Richard; Vaden, Justin; Hyatt, Bryan; Chenault, David B.; Kingston, David; Geulen, Vanilynmae; Newell, Scott; Pettijohn, Brad
2009-02-01
In this paper, we report on the development of a 3D vision system consisting of a flat panel stereoscopic display and auto-converging stereo camera and an assessment of the system's use for robotic driving, manipulation, and surveillance operations. The 3D vision system was integrated onto a Talon Robot and Operator Control Unit (OCU) such that direct comparisons of the performance of a number of test subjects using 2D and 3D vision systems were possible. A number of representative scenarios were developed to determine which tasks benefited most from the added depth perception and to understand when the 3D vision system hindered understanding of the scene. Two tests were conducted at Fort Leonard Wood, MO with noncommissioned officers ranked Staff Sergeant and Sergeant First Class. The scenarios; the test planning, approach and protocols; the data analysis; and the resulting performance assessment of the 3D vision system are reported.
Dawood, A; Marti Marti, B; Sauret-Jackson, V; Darwood, A
2015-12-01
3D printing has been hailed as a disruptive technology which will change manufacturing. Used in aerospace, defence, art and design, 3D printing is becoming a subject of great interest in surgery. The technology has a particular resonance with dentistry, and with advances in 3D imaging and modelling technologies such as cone beam computed tomography and intraoral scanning, and with the relatively long history of the use of CAD CAM technologies in dentistry, it will become of increasing importance. Uses of 3D printing include the production of drill guides for dental implants, the production of physical models for prosthodontics, orthodontics and surgery, the manufacture of dental, craniomaxillofacial and orthopaedic implants, and the fabrication of copings and frameworks for implant and dental restorations. This paper reviews the types of 3D printing technologies available and their various applications in dentistry and in maxillofacial surgery.
NASA Technical Reports Server (NTRS)
Walatka, Pamela P.; Buning, Pieter G.; Pierce, Larry; Elson, Patricia A.
1990-01-01
PLOT3D is a computer graphics program designed to visualize the grids and solutions of computational fluid dynamics. Seventy-four functions are available. Versions are available for many systems. PLOT3D can handle multiple grids with a million or more grid points, and can produce varieties of model renderings, such as wireframe or flat shaded. Output from PLOT3D can be used in animation programs. The first part of this manual is a tutorial that takes the reader, keystroke by keystroke, through a PLOT3D session. The second part of the manual contains reference chapters, including the helpfile, data file formats, advice on changing PLOT3D, and sample command files.
PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITHOUT TURB3D)
NASA Technical Reports Server (NTRS)
Buning, P.
1994-01-01
PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into
PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITH TURB3D)
NASA Technical Reports Server (NTRS)
Buning, P.
1994-01-01
PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into
Unassisted 3D camera calibration
NASA Astrophysics Data System (ADS)
Atanassov, Kalin; Ramachandra, Vikas; Nash, James; Goma, Sergio R.
2012-03-01
With the rapid growth of 3D technology, 3D image capture has become a critical part of the 3D feature set on mobile phones. 3D image quality is affected by the scene geometry as well as on-the-device processing. An automatic 3D system usually assumes known camera poses accomplished by factory calibration using a special chart. In real life settings, pose parameters estimated by factory calibration can be negatively impacted by movements of the lens barrel due to shaking, focusing, or camera drop. If any of these factors displaces the optical axes of either or both cameras, vertical disparity might exceed the maximum tolerable margin and the 3D user may experience eye strain or headaches. To make 3D capture more practical, one needs to consider unassisted (on arbitrary scenes) calibration. In this paper, we propose an algorithm that relies on detection and matching of keypoints between left and right images. Frames containing erroneous matches, along with frames with insufficiently rich keypoint constellations, are detected and discarded. Roll, pitch yaw , and scale differences between left and right frames are then estimated. The algorithm performance is evaluated in terms of the remaining vertical disparity as compared to the maximum tolerable vertical disparity.
2007-11-02
AGENCY USE ONLY (Leave Blank) 2. REPORT DATE 5 Feb 98 4. TITLE AND SUBTITLE 3D Scan Systems Integration REPORT TYPE AND DATES COVERED...2-89) Prescribed by ANSI Std. Z39-1 298-102 [ EDO QUALITY W3PECTEDI DLA-ARN Final Report for US Defense Logistics Agency on DDFG-T2/P3: 3D...SCAN SYSTEMS INTEGRATION Contract Number SPO100-95-D-1014 Contractor Ohio University Delivery Order # 0001 Delivery Order Title 3D Scan Systems
Planetary Torque in 3D Isentropic Disks
NASA Astrophysics Data System (ADS)
Fung, Jeffrey; Masset, Frédéric; Lega, Elena; Velasco, David
2017-03-01
Planetary migration is inherently a three-dimensional (3D) problem, because Earth-size planetary cores are deeply embedded in protoplanetary disks. Simulations of these 3D disks remain challenging due to the steep resolution requirements. Using two different hydrodynamics codes, FARGO3D and PEnGUIn, we simulate disk–planet interaction for a one to five Earth-mass planet embedded in an isentropic disk. We measure the torque on the planet and ensure that the measurements are converged both in resolution and between the two codes. We find that the torque is independent of the smoothing length of the planet’s potential (r s), and that it has a weak dependence on the adiabatic index of the gaseous disk (γ). The torque values correspond to an inward migration rate qualitatively similar to previous linear calculations. We perform additional simulations with explicit radiative transfer using FARGOCA, and again find agreement between 3D simulations and existing torque formulae. We also present the flow pattern around the planets that show active flow is present within the planet’s Hill sphere, and meridional vortices are shed downstream. The vertical flow speed near the planet is faster for a smaller r s or γ, up to supersonic speeds for the smallest r s and γ in our study.
Simon, Carl G; Yang, Yanyin; Dorsey, Shauna M; Ramalingam, Murugan; Chatterjee, Kaushik
2011-01-01
We have developed a combinatorial platform for fabricating tissue scaffold arrays that can be used for screening cell-material interactions. Traditional research involves preparing samples one at a time for characterization and testing. Combinatorial and high-throughput (CHT) methods lower the cost of research by reducing the amount of time and material required for experiments by combining many samples into miniaturized specimens. In order to help accelerate biomaterials research, many new CHT methods have been developed for screening cell-material interactions where materials are presented to cells as a 2D film or surface. However, biomaterials are frequently used to fabricate 3D scaffolds, cells exist in vivo in a 3D environment and cells cultured in a 3D environment in vitro typically behave more physiologically than those cultured on a 2D surface. Thus, we have developed a platform for fabricating tissue scaffold libraries where biomaterials can be presented to cells in a 3D format.
NASA Astrophysics Data System (ADS)
Lee-Elkin, Forest
2008-04-01
Three dimensional (3D) autofocus remains a significant challenge for the development of practical 3D multipass radar imaging. The current 2D radar autofocus methods are not readily extendable across sensor passes. We propose a general framework that allows a class of data adaptive solutions for 3D auto-focus across passes with minimal constraints on the scene contents. The key enabling assumption is that portions of the scene are sparse in elevation which reduces the number of free variables and results in a system that is simultaneously solved for scatterer heights and autofocus parameters. The proposed method extends 2-pass interferometric synthetic aperture radar (IFSAR) methods to an arbitrary number of passes allowing the consideration of scattering from multiple height locations. A specific case from the proposed autofocus framework is solved and demonstrates autofocus and coherent multipass 3D estimation across the 8 passes of the "Gotcha Volumetric SAR Data Set" X-Band radar data.
Combinatorial 3D Mechanical Metamaterials
NASA Astrophysics Data System (ADS)
Coulais, Corentin; Teomy, Eial; de Reus, Koen; Shokef, Yair; van Hecke, Martin
2015-03-01
We present a class of elastic structures which exhibit 3D-folding motion. Our structures consist of cubic lattices of anisotropic unit cells that can be tiled in a complex combinatorial fashion. We design and 3d-print this complex ordered mechanism, in which we combine elastic hinges and defects to tailor the mechanics of the material. Finally, we use this large design space to encode smart functionalities such as surface patterning and multistability.
[Development of a software for 3D virtual phantom design].
Zou, Lian; Xie, Zhao; Wu, Qi
2014-02-01
In this paper, we present a 3D virtual phantom design software, which was developed based on object-oriented programming methodology and dedicated to medical physics research. This software was named Magical Phan tom (MPhantom), which is composed of 3D visual builder module and virtual CT scanner. The users can conveniently construct any complex 3D phantom, and then export the phantom as DICOM 3.0 CT images. MPhantom is a user-friendly and powerful software for 3D phantom configuration, and has passed the real scene's application test. MPhantom will accelerate the Monte Carlo simulation for dose calculation in radiation therapy and X ray imaging reconstruction algorithm research.
UCVM: An Open Source Framework for 3D Velocity Model Research
NASA Astrophysics Data System (ADS)
Gill, D.; Maechling, P. J.; Jordan, T. H.; Plesch, A.; Taborda, R.; Callaghan, S.; Small, P.
2013-12-01
Three-dimensional (3D) seismic velocity models provide fundamental input data to ground motion simulations, in the form of structured or unstructured meshes or grids. Numerous models are available for California, as well as for other parts of the United States and Europe, but models do not share a common interface. Being able to interact with these models in a standardized way is critical in order to configure and run 3D ground motion simulations. The Unified Community Velocity Model (UCVM) software, developed by researchers at the Southern California Earthquake Center (SCEC), is an open source framework designed to provide a cohesive way to interact with seismic velocity models. We describe the several ways in which we have improved the UCVM software over the last year. We have simplified the UCVM installation process by automating the installation of various community codebases, improving the ease of use.. We discuss how UCVM software was used to build velocity meshes for high-frequency (4Hz) deterministic 3D wave propagation simulations, and how the UCVM framework interacts with other open source resources, such as NetCDF file formats for visualization. The UCVM software uses a layered software architecture that transparently converts geographic coordinates to the coordinate systems used by the underlying velocity models and supports inclusion of a configurable near-surface geotechnical layer, while interacting with the velocity model codes through their existing software interfaces. No changes to the velocity model codes are required. Our recent UCVM installation improvements bundle UCVM with a setup script, written in Python, which guides users through the process that installs the UCVM software along with all the user-selectable velocity models. Each velocity model is converted into a standardized (configure, make, make install) format that is easily downloaded and installed via the script. UCVM is often run in specialized high performance computing (HPC
NASA Astrophysics Data System (ADS)
Dima, M.; Farisato, G.; Bergomi, M.; Viotto, V.; Magrin, D.; Greggio, D.; Farinato, J.; Marafatto, L.; Ragazzoni, R.; Piazza, D.
2014-08-01
In the last few years 3D printing is getting more and more popular and used in many fields going from manufacturing to industrial design, architecture, medical support and aerospace. 3D printing is an evolution of bi-dimensional printing, which allows to obtain a solid object from a 3D model, realized with a 3D modelling software. The final product is obtained using an additive process, in which successive layers of material are laid down one over the other. A 3D printer allows to realize, in a simple way, very complex shapes, which would be quite difficult to be produced with dedicated conventional facilities. Thanks to the fact that the 3D printing is obtained superposing one layer to the others, it doesn't need any particular work flow and it is sufficient to simply draw the model and send it to print. Many different kinds of 3D printers exist based on the technology and material used for layer deposition. A common material used by the toner is ABS plastics, which is a light and rigid thermoplastic polymer, whose peculiar mechanical properties make it diffusely used in several fields, like pipes production and cars interiors manufacturing. I used this technology to create a 1:1 scale model of the telescope which is the hardware core of the space small mission CHEOPS (CHaracterising ExOPlanets Satellite) by ESA, which aims to characterize EXOplanets via transits observations. The telescope has a Ritchey-Chrétien configuration with a 30cm aperture and the launch is foreseen in 2017. In this paper, I present the different phases for the realization of such a model, focusing onto pros and cons of this kind of technology. For example, because of the finite printable volume (10×10×12 inches in the x, y and z directions respectively), it has been necessary to split the largest parts of the instrument in smaller components to be then reassembled and post-processed. A further issue is the resolution of the printed material, which is expressed in terms of layers
YouDash3D: exploring stereoscopic 3D gaming for 3D movie theaters
NASA Astrophysics Data System (ADS)
Schild, Jonas; Seele, Sven; Masuch, Maic
2012-03-01
Along with the success of the digitally revived stereoscopic cinema, events beyond 3D movies become attractive for movie theater operators, i.e. interactive 3D games. In this paper, we present a case that explores possible challenges and solutions for interactive 3D games to be played by a movie theater audience. We analyze the setting and showcase current issues related to lighting and interaction. Our second focus is to provide gameplay mechanics that make special use of stereoscopy, especially depth-based game design. Based on these results, we present YouDash3D, a game prototype that explores public stereoscopic gameplay in a reduced kiosk setup. It features live 3D HD video stream of a professional stereo camera rig rendered in a real-time game scene. We use the effect to place the stereoscopic effigies of players into the digital game. The game showcases how stereoscopic vision can provide for a novel depth-based game mechanic. Projected trigger zones and distributed clusters of the audience video allow for easy adaptation to larger audiences and 3D movie theater gaming.
NASA Technical Reports Server (NTRS)
2002-01-01
In 1999, Genex submitted a proposal to Stennis Space Center for a volumetric 3-D display technique that would provide multiple users with a 360-degree perspective to simultaneously view and analyze 3-D data. The futuristic capabilities of the VolumeViewer(R) have offered tremendous benefits to commercial users in the fields of medicine and surgery, air traffic control, pilot training and education, computer-aided design/computer-aided manufacturing, and military/battlefield management. The technology has also helped NASA to better analyze and assess the various data collected by its satellite and spacecraft sensors. Genex capitalized on its success with Stennis by introducing two separate products to the commercial market that incorporate key elements of the 3-D display technology designed under an SBIR contract. The company Rainbow 3D(R) imaging camera is a novel, three-dimensional surface profile measurement system that can obtain a full-frame 3-D image in less than 1 second. The third product is the 360-degree OmniEye(R) video system. Ideal for intrusion detection, surveillance, and situation management, this unique camera system offers a continuous, panoramic view of a scene in real time.
Uncertainty in 3D gel dosimetry
NASA Astrophysics Data System (ADS)
De Deene, Yves; Jirasek, Andrew
2015-01-01
Three-dimensional (3D) gel dosimetry has a unique role to play in safeguarding conformal radiotherapy treatments as the technique can cover the full treatment chain and provides the radiation oncologist with the integrated dose distribution in 3D. It can also be applied to benchmark new treatment strategies such as image guided and tracking radiotherapy techniques. A major obstacle that has hindered the wider dissemination of gel dosimetry in radiotherapy centres is a lack of confidence in the reliability of the measured dose distribution. Uncertainties in 3D dosimeters are attributed to both dosimeter properties and scanning performance. In polymer gel dosimetry with MRI readout, discrepancies in dose response of large polymer gel dosimeters versus small calibration phantoms have been reported which can lead to significant inaccuracies in the dose maps. The sources of error in polymer gel dosimetry with MRI readout are well understood and it has been demonstrated that with a carefully designed scanning protocol, the overall uncertainty in absolute dose that can currently be obtained falls within 5% on an individual voxel basis, for a minimum voxel size of 5 mm3. However, several research groups have chosen to use polymer gel dosimetry in a relative manner by normalizing the dose distribution towards an internal reference dose within the gel dosimeter phantom. 3D dosimetry with optical scanning has also been mostly applied in a relative way, although in principle absolute calibration is possible. As the optical absorption in 3D dosimeters is less dependent on temperature it can be expected that the achievable accuracy is higher with optical CT. The precision in optical scanning of 3D dosimeters depends to a large extend on the performance of the detector. 3D dosimetry with X-ray CT readout is a low contrast imaging modality for polymer gel dosimetry. Sources of error in x-ray CT polymer gel dosimetry (XCT) are currently under investigation and include inherent
Van Goethem, Emeline; Guiet, Romain; Balor, Stéphanie; Charrière, Guillaume M; Poincloux, Renaud; Labrousse, Arnaud; Maridonneau-Parini, Isabelle; Le Cabec, Véronique
2011-01-01
Macrophage tissue infiltration is a critical step in the immune response against microorganisms and is also associated with disease progression in chronic inflammation and cancer. Macrophages are constitutively equipped with specialized structures called podosomes dedicated to extracellular matrix (ECM) degradation. We recently reported that these structures play a critical role in trans-matrix mesenchymal migration mode, a protease-dependent mechanism. Podosome molecular components and their ECM-degrading activity have been extensively studied in two dimensions (2D), but yet very little is known about their fate in three-dimensional (3D) environments. Therefore, localization of podosome markers and proteolytic activity were carefully examined in human macrophages performing mesenchymal migration. Using our gelled collagen I 3D matrix model to obligate human macrophages to perform mesenchymal migration, classical podosome markers including talin, paxillin, vinculin, gelsolin, cortactin were found to accumulate at the tip of F-actin-rich cell protrusions together with β1 integrin and CD44 but not β2 integrin. Macrophage proteolytic activity was observed at podosome-like protrusion sites using confocal fluorescence microscopy and electron microscopy. The formation of migration tunnels by macrophages inside the matrix was accomplished by degradation, engulfment and mechanic compaction of the matrix. In addition, videomicroscopy revealed that 3D F-actin-rich protrusions of migrating macrophages were as dynamic as their 2D counterparts. Overall, the specifications of 3D podosomes resembled those of 2D podosome rosettes rather than those of individual podosomes. This observation was further supported by the aspect of 3D podosomes in fibroblasts expressing Hck, a master regulator of podosome rosettes in macrophages. In conclusion, human macrophage podosomes go 3D and take the shape of spherical podosome rosettes when the cells perform mesenchymal migration. This work
3D Printed Bionic Nanodevices.
Kong, Yong Lin; Gupta, Maneesh K; Johnson, Blake N; McAlpine, Michael C
2016-06-01
The ability to three-dimensionally interweave biological and functional materials could enable the creation of bionic devices possessing unique and compelling geometries, properties, and functionalities. Indeed, interfacing high performance active devices with biology could impact a variety of fields, including regenerative bioelectronic medicines, smart prosthetics, medical robotics, and human-machine interfaces. Biology, from the molecular scale of DNA and proteins, to the macroscopic scale of tissues and organs, is three-dimensional, often soft and stretchable, and temperature sensitive. This renders most biological platforms incompatible with the fabrication and materials processing methods that have been developed and optimized for functional electronics, which are typically planar, rigid and brittle. A number of strategies have been developed to overcome these dichotomies. One particularly novel approach is the use of extrusion-based multi-material 3D printing, which is an additive manufacturing technology that offers a freeform fabrication strategy. This approach addresses the dichotomies presented above by (1) using 3D printing and imaging for customized, hierarchical, and interwoven device architectures; (2) employing nanotechnology as an enabling route for introducing high performance materials, with the potential for exhibiting properties not found in the bulk; and (3) 3D printing a range of soft and nanoscale materials to enable the integration of a diverse palette of high quality functional nanomaterials with biology. Further, 3D printing is a multi-scale platform, allowing for the incorporation of functional nanoscale inks, the printing of microscale features, and ultimately the creation of macroscale devices. This blending of 3D printing, novel nanomaterial properties, and 'living' platforms may enable next-generation bionic systems. In this review, we highlight this synergistic integration of the unique properties of nanomaterials with the
NASA Technical Reports Server (NTRS)
1997-01-01
Portions of the lander's deflated airbags and a petal are at the lower area of this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. The metallic object at lower right is part of the lander's low-gain antenna. This image is part of a 3D 'monster
Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right
3D Computations and Experiments
Couch, R; Faux, D; Goto, D; Nikkel, D
2004-04-05
This project consists of two activities. Task A, Simulations and Measurements, combines all the material model development and associated numerical work with the materials-oriented experimental activities. The goal of this effort is to provide an improved understanding of dynamic material properties and to provide accurate numerical representations of those properties for use in analysis codes. Task B, ALE3D Development, involves general development activities in the ALE3D code with the focus of improving simulation capabilities for problems of mutual interest to DoD and DOE. Emphasis is on problems involving multi-phase flow, blast loading of structures and system safety/vulnerability studies.
ERIC Educational Resources Information Center
Mayshark, Robin K.
1991-01-01
Students explore three-dimensional properties by creating red and green wall decorations related to Christmas. Students examine why images seem to vibrate when red and green pieces are small and close together. Instructions to conduct the activity and construct 3-D glasses are given. (MDH)
3D Printing: Exploring Capabilities
ERIC Educational Resources Information Center
Samuels, Kyle; Flowers, Jim
2015-01-01
As 3D printers become more affordable, schools are using them in increasing numbers. They fit well with the emphasis on product design in technology and engineering education, allowing students to create high-fidelity physical models to see and test different iterations in their product designs. They may also help students to "think in three…
Russ, Trina; Koch, Mark; Koudelka, Melissa; Peters, Ralph; Little, Charles; Boehnen, Chris; Peters, Tanya
2007-07-20
This software distribution contains MATLAB and C++ code to enable identity verification using 3D images that may or may not contain a texture component. The code is organized to support system performance testing and system capability demonstration through the proper configuration of the available user interface. Using specific algorithm parameters the face recognition system has been demonstrated to achieve a 96.6% verification rate (Pd) at 0.001 false alarm rate. The system computes robust facial features of a 3D normalized face using Principal Component Analysis (PCA) and Fisher Linear Discriminant Analysis (FLDA). A 3D normalized face is obtained by alighning each face, represented by a set of XYZ coordinated, to a scaled reference face using the Iterative Closest Point (ICP) algorithm. The scaled reference face is then deformed to the input face using an iterative framework with parameters that control the deformed surface regulation an rate of deformation. A variety of options are available to control the information that is encoded by the PCA. Such options include the XYZ coordinates, the difference of each XYZ coordinates from the reference, the Z coordinate, the intensity/texture values, etc. In addition to PCA/FLDA feature projection this software supports feature matching to obtain similarity matrices for performance analysis. In addition, this software supports visualization of the STL, MRD, 2D normalized, and PCA synthetic representations in a 3D environment.
ERIC Educational Resources Information Center
Manos, Harry
2016-01-01
Visual aids are important to student learning, and they help make the teacher's job easier. Keeping with the "TPT" theme of "The Art, Craft, and Science of Physics Teaching," the purpose of this article is to show how teachers, lacking equipment and funds, can construct a durable 3-D model reference frame and a model gravity…
Radiation-MHD Simulations of Plasma-Jet-Driven Magneto-Inertial Fusion Gain Using USim
NASA Astrophysics Data System (ADS)
Stoltz, Peter; Beckwith, Kristian; Kundrapu, Mahdusudhan; Hsu, Scott; Langendorf, Samuel
2016-10-01
One goal of the modeling effort for the PLX- α project is to identify plasma-jet-driven magneto-inertial fusion (PJMIF) configurations with potential net fusion-energy gain. We use USim, which is a tool for modeling high-energy-density plasmas using multi-fluid models coupled to electromagnetics using fully-implicit iterative solvers, combined with finite volume discretizations on unstructured meshes. We include physical viscosity and advanced-EOS modeling capability, and are investigating the effects of different radiation (including flux-limited diffusion) and alpha-transport models. We compare 2D and 1D gain calculations for various liner geometries, parameters, and plasma species, and consider the effects of liner non-uniformities on fusion-gain degradation. Supported by the ARPA-E ALPHA Program.
Forensic 3D scene reconstruction
NASA Astrophysics Data System (ADS)
Little, Charles Q.; Small, Daniel E.; Peters, Ralph R.; Rigdon, J. B.
2000-05-01
Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a fieldable prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.
NASA Technical Reports Server (NTRS)
Pizarro, Yaritzmar Rosario; Schuler, Jason M.; Lippitt, Thomas C.
2013-01-01
Dexterous robotic hands are changing the way robots and humans interact and use common tools. Unfortunately, the complexity of the joints and actuations drive up the manufacturing cost. Some cutting edge and commercially available rapid prototyping machines now have the ability to print multiple materials and even combine these materials in the same job. A 3D model of a robotic hand was designed using Creo Parametric 2.0. Combining "hard" and "soft" materials, the model was printed on the Object Connex350 3D printer with the purpose of resembling as much as possible the human appearance and mobility of a real hand while needing no assembly. After printing the prototype, strings where installed as actuators to test mobility. Based on printing materials, the manufacturing cost of the hand was $167, significantly lower than other robotic hands without the actuators since they have more complex assembly processes.
van Geer, Erik; Molenbroek, Johan; Schreven, Sander; deVoogd-Claessen, Lenneke; Toussaint, Huib
2012-01-01
In competitive swimming, suits have become more important. These suits influence friction, pressure and wave drag. Friction drag is related to the surface properties whereas both pressure and wave drag are greatly influenced by body shape. To find a relationship between the body shape and the drag, the anthropometry of several world class female swimmers wearing different suits was accurately defined using a 3D scanner and traditional measuring methods. The 3D scans delivered more detailed information about the body shape. On the same day the swimmers did performance tests in the water with the tested suits. Afterwards the result of the performance tests and the differences found in body shape was analyzed to determine the deformation caused by a swimsuit and its effect on the swimming performance. Although the amount of data is limited because of the few test subjects, there is an indication that the deformation of the body influences the swimming performance.
Forensic 3D Scene Reconstruction
LITTLE,CHARLES Q.; PETERS,RALPH R.; RIGDON,J. BRIAN; SMALL,DANIEL E.
1999-10-12
Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a feasible prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.
Belenkov, E. A. Ali-Pasha, V. A.
2011-01-15
The structure of clusters of some new carbon 3D-graphite phases have been calculated using the molecular-mechanics methods. It is established that 3D-graphite polytypes {alpha}{sub 1,1}, {alpha}{sub 1,3}, {alpha}{sub 1,5}, {alpha}{sub 2,1}, {alpha}{sub 2,3}, {alpha}{sub 3,1}, {beta}{sub 1,2}, {beta}{sub 1,4}, {beta}{sub 1,6}, {beta}{sub 2,1}, and {beta}{sub 3,2} consist of sp{sup 2}-hybridized atoms, have hexagonal unit cells, and differ in regards to the structure of layers and order of their alternation. A possible way to experimentally synthesize new carbon phases is proposed: the polymerization and carbonization of hydrocarbon molecules.
[Real time 3D echocardiography
NASA Technical Reports Server (NTRS)
Bauer, F.; Shiota, T.; Thomas, J. D.
2001-01-01
Three-dimensional representation of the heart is an old concern. Usually, 3D reconstruction of the cardiac mass is made by successive acquisition of 2D sections, the spatial localisation and orientation of which require complex guiding systems. More recently, the concept of volumetric acquisition has been introduced. A matricial emitter-receiver probe complex with parallel data processing provides instantaneous of a pyramidal 64 degrees x 64 degrees volume. The image is restituted in real time and is composed of 3 planes (planes B and C) which can be displaced in all spatial directions at any time during acquisition. The flexibility of this system of acquisition allows volume and mass measurement with greater accuracy and reproducibility, limiting inter-observer variability. Free navigation of the planes of investigation allows reconstruction for qualitative and quantitative analysis of valvular heart disease and other pathologies. Although real time 3D echocardiography is ready for clinical usage, some improvements are still necessary to improve its conviviality. Then real time 3D echocardiography could be the essential tool for understanding, diagnosis and management of patients.
GPU-Accelerated Denoising in 3D (GD3D)
2013-10-01
The raw computational power GPU Accelerators enables fast denoising of 3D MR images using bilateral filtering, anisotropic diffusion, and non-local means. This software addresses two facets of this promising application: what tuning is necessary to achieve optimal performance on a modern GPU? And what parameters yield the best denoising results in practice? To answer the first question, the software performs an autotuning step to empirically determine optimal memory blocking on the GPU. To answer the second, it performs a sweep of algorithm parameters to determine the combination that best reduces the mean squared error relative to a noiseless reference image.
NASA Astrophysics Data System (ADS)
Kent, G. M.; Harding, A. J.; Babcock, J. M.; Orcutt, J. A.; Bazin, S.; Singh, S.; Detrick, R. S.; Canales, J. P.; Carbotte, S. M.; Diebold, J.
2002-12-01
Multichannel seismic (MCS) images of crustal magma chambers are ideal targets for advanced visualization techniques. In the mid-ocean ridge environment, reflections originating at the melt-lens are well separated from other reflection boundaries, such as the seafloor, layer 2A and Moho, which enables the effective use of transparency filters. 3-D visualization of seismic reflectivity falls into two broad categories: volume and surface rendering. Volumetric-based visualization is an extremely powerful approach for the rapid exploration of very dense 3-D datasets. These 3-D datasets are divided into volume elements or voxels, which are individually color coded depending on the assigned datum value; the user can define an opacity filter to reject plotting certain voxels. This transparency allows the user to peer into the data volume, enabling an easy identification of patterns or relationships that might have geologic merit. Multiple image volumes can be co-registered to look at correlations between two different data types (e.g., amplitude variation with offsets studies), in a manner analogous to draping attributes onto a surface. In contrast, surface visualization of seismic reflectivity usually involves producing "fence" diagrams of 2-D seismic profiles that are complemented with seafloor topography, along with point class data, draped lines and vectors (e.g. fault scarps, earthquake locations and plate-motions). The overlying seafloor can be made partially transparent or see-through, enabling 3-D correlations between seafloor structure and seismic reflectivity. Exploration of 3-D datasets requires additional thought when constructing and manipulating these complex objects. As numbers of visual objects grow in a particular scene, there is a tendency to mask overlapping objects; this clutter can be managed through the effective use of total or partial transparency (i.e., alpha-channel). In this way, the co-variation between different datasets can be investigated