Science.gov

Sample records for 3d velocity mapping

  1. Azimuthally Anisotropic 3D Velocity Continuation

    DOE PAGES

    Burnett, William; Fomel, Sergey

    2011-01-01

    We extend time-domain velocity continuation to the zero-offset 3D azimuthally anisotropic case. Velocity continuation describes how a seismic image changes given a change in migration velocity. This description turns out to be of a wave propagation process, in which images change along a velocity axis. In the anisotropic case, the velocity model is multiparameter. Therefore, anisotropic image propagation is multidimensional. We use a three-parameter slowness model, which is related to azimuthal variations in velocity, as well as their principal directions. This information is useful for fracture and reservoir characterization from seismic data. We provide synthetic diffraction imaging examples to illustratemore » the concept and potential applications of azimuthal velocity continuation and to analyze the impulse response of the 3D velocity continuation operator.« less

  2. [3D emulation of epicardium dynamic mapping].

    PubMed

    Lu, Jun; Yang, Cui-Wei; Fang, Zu-Xiang

    2005-03-01

    In order to realize epicardium dynamic mapping of the whole atria, 3-D graphics are drawn with OpenGL. Some source codes are introduced in the paper to explain how to produce, read, and manipulate 3-D model data.

  3. Positional Awareness Map 3D (PAM3D)

    NASA Technical Reports Server (NTRS)

    Hoffman, Monica; Allen, Earl L.; Yount, John W.; Norcross, April Louise

    2012-01-01

    The Western Aeronautical Test Range of the National Aeronautics and Space Administration s Dryden Flight Research Center needed to address the aging software and hardware of its current situational awareness display application, the Global Real-Time Interactive Map (GRIM). GRIM was initially developed in the late 1980s and executes on older PC architectures using a Linux operating system that is no longer supported. Additionally, the software is difficult to maintain due to its complexity and loss of developer knowledge. It was decided that a replacement application must be developed or acquired in the near future. The replacement must provide the functionality of the original system, the ability to monitor test flight vehicles in real-time, and add improvements such as high resolution imagery and true 3-dimensional capability. This paper will discuss the process of determining the best approach to replace GRIM, and the functionality and capabilities of the first release of the Positional Awareness Map 3D.

  4. A 3D Geostatistical Mapping Tool

    SciTech Connect

    Weiss, W. W.; Stevenson, Graig; Patel, Ketan; Wang, Jun

    1999-02-09

    This software provides accurate 3D reservoir modeling tools and high quality 3D graphics for PC platforms enabling engineers and geologists to better comprehend reservoirs and consequently improve their decisions. The mapping algorithms are fractals, kriging, sequential guassian simulation, and three nearest neighbor methods.

  5. Investigation of surface wave amplitudes in 3-D velocity and 3-D Q models

    NASA Astrophysics Data System (ADS)

    Ruan, Y.; Zhou, Y.

    2010-12-01

    It has been long recognized that seismic amplitudes depend on both wave speed structures and anelasticity (Q) structures. However, the effects of lateral heterogeneities in wave speed and Q structures on seismic amplitudes has not been well understood. We investigate the effects of 3-D wave speed and 3-D anelasticity (Q) structures on surface-wave amplitudes based upon wave propagation simulations of twelve globally-distributed earthquakes and 801 stations in Earth models with and without lateral heterogeneities in wave speed and anelasticity using a Spectral Element Method (SEM). Our tomographic-like 3-D Q models are converted from a velocity model S20RTS using a set of reasonable mineralogical parameters, assuming lateral perturbations in both velocity and Q are due to temperature perturbations. Surface-wave amplitude variations of SEM seismograms are measured in the period range of 50--200 s using boxcar taper, cosine taper and Slepian multi-tapers. We calculate ray-theoretical predictions of surface-wave amplitude perturbations due to elastic focusing, attenuation, and anelastic focusing which respectively depend upon the second spatial derivative (''roughness'') of perturbations in phase velocity, 1/Q, and the roughness of perturbations in 1/Q. Both numerical experiments and theoretical calculations show that (1) for short-period (~ 50 s) surface waves, the effects of amplitude attenuation due to 3-D Q structures are comparable with elastic focusing effects due to 3-D wave speed structures; and (2) for long-period (> 100 s) surface waves, the effects of attenuation become much weaker than elastic focusing; and (3) elastic focusing effects are correlated with anelastic focusing at all periods due to the correlation between velocity and Q models; and (4) amplitude perturbations are depend on measurement techniques and therefore cannot be directly compared with ray-theoretical predictions because ray theory does not account for the effects of measurement

  6. 3D finite element simulations of high velocity projectile impact

    NASA Astrophysics Data System (ADS)

    Ožbolt, Joško; İrhan, Barış; Ruta, Daniela

    2015-09-01

    An explicit three-dimensional (3D) finite element (FE) code is developed for the simulation of high velocity impact and fragmentation events. The rate sensitive microplane material model, which accounts for large deformations and rate effects, is used as a constitutive law. In the code large deformation frictional contact is treated by forward incremental Lagrange multiplier method. To handle highly distorted and damaged elements the approach based on the element deletion is employed. The code is then used in 3D FE simulations of high velocity projectile impact. The results of the numerical simulations are evaluated and compared with experimental results. It is shown that it realistically predicts failure mode and exit velocities for different geometries of plain concrete slab. Moreover, the importance of some relevant parameters, such as contact friction, rate sensitivity, bulk viscosity and deletion criteria are addressed.

  7. Measuring the Stellar Halo Velocity Anisotropy With 3D Kinematics

    NASA Astrophysics Data System (ADS)

    Cunningham, Emily C.; Deason, Alis J.; Guhathakurta, Puragra; Rockosi, Constance M.; van der Marel, Roeland P.; Sohn, S. Tony

    2016-08-01

    We present the first measurement of the anisotropy parameter β using 3D kinematic information outside of the solar neighborhood. Our sample consists of 13 Milky Way halo stars with measured proper motions and radial velocities in the line of sight of M31. Proper motions were measured using deep, multi-epoch HST imaging, and radial velocities were measured from Keck II/DEIMOS spectra. We measure β = -0.3-0.9 +0.4, which is consistent with isotropy, and inconsistent with measurements in the solar neighborhood. We suggest that this may be the kinematic signature of a relatively early, massive accretion event, or perhaps several such events.

  8. 3-D Velocity Measurement of Natural Convection Using Image Processing

    NASA Astrophysics Data System (ADS)

    Shinoki, Masatoshi; Ozawa, Mamoru; Okada, Toshifumi; Kimura, Ichiro

    This paper describes quantitative three-dimensional measurement method for flow field of a rotating Rayleigh-Benard convection in a cylindrical cell heated below and cooled above. A correlation method for two-dimensional measurement was well advanced to a spatio-temporal correlation method. Erroneous vectors, often appeared in the correlation method, was successfully removed using Hopfield neural network. As a result, calculated 3-D velocity vector distribution well corresponded to the observed temperature distribution. Consequently, the simultaneous three-dimensional measurement system for temperature and flow field was developed.

  9. MAP3D: a media processor approach for high-end 3D graphics

    NASA Astrophysics Data System (ADS)

    Darsa, Lucia; Stadnicki, Steven; Basoglu, Chris

    1999-12-01

    Equator Technologies, Inc. has used a software-first approach to produce several programmable and advanced VLIW processor architectures that have the flexibility to run both traditional systems tasks and an array of media-rich applications. For example, Equator's MAP1000A is the world's fastest single-chip programmable signal and image processor targeted for digital consumer and office automation markets. The Equator MAP3D is a proposal for the architecture of the next generation of the Equator MAP family. The MAP3D is designed to achieve high-end 3D performance and a variety of customizable special effects by combining special graphics features with high performance floating-point and media processor architecture. As a programmable media processor, it offers the advantages of a completely configurable 3D pipeline--allowing developers to experiment with different algorithms and to tailor their pipeline to achieve the highest performance for a particular application. With the support of Equator's advanced C compiler and toolkit, MAP3D programs can be written in a high-level language. This allows the compiler to successfully find and exploit any parallelism in a programmer's code, thus decreasing the time to market of a given applications. The ability to run an operating system makes it possible to run concurrent applications in the MAP3D chip, such as video decoding while executing the 3D pipelines, so that integration of applications is easily achieved--using real-time decoded imagery for texturing 3D objects, for instance. This novel architecture enables an affordable, integrated solution for high performance 3D graphics.

  10. Joint Impact Proposal: A complete velocity resolved 3-D [CII] map of the M51 grand-design spiral galaxy: Unraveling the impact of spiral density waves on the evolution of the ISM and star formation.

    NASA Astrophysics Data System (ADS)

    Stutzki, Juergen

    2015-10-01

    We propose to obtain the first complete, velocity resolved [CII] 158um image of the M51 grand-design spiral galaxy with the upGREAT and FIFI-LS instruments on SOFIA. Spiral density waves play a fundamental role on the conversion of atomic to molecular gas, leading to gravitational contraction and thus to star formation. Understanding the impact of spiral density waves on the lifecycle of the interstellar medium and on star formation in galaxies is thus critical for our understanding of galaxy evolution. The [CII] line (in combination with the low-J CO lines and HI 21 cm) is an important tool to diagnose the physical state of the ISM. It can reveal the distribution of the gas that is making a transition between atomic and molecular phases, including the CO-dark H2 gas (hydrogen molecular but carbon ionized, and thus not traced by either HI or CO) in the spiral arms and interarm regions of M51. We will use the high spectral resolution of the upGREAT instrument to resolve spiral arms in velocity, allowing us to study the flow of gas through spiral arms and measure line widths and determine the dynamical state of prominent interarm clouds. The significantly more sensitive FIFI-LS will be used to detect extended faint [CII] emission in the interarm regions and outskirts of the galaxy, including the gas connection to the companion galaxy. The 3-D data cube of velocity-resolved [CII] in this nearby galaxy, combined with the wealth of ancillary data, can be used for a large set of investigations by the broader astronomical community. It will provide for the first time the link between the detailed physical processes in the star-forming ISM in the Milky Way and the average properties of distant external galaxies. This complete map will be also an excellent showcase of SOFIA's capabilities for years to come.

  11. Joint Impact Proposal: A complete velocity resolved 3-D [CII] map of the M51 grand-design spiral galaxy: Unraveling the impact of spiral density waves on the evolution of the ISM and star formation.

    NASA Astrophysics Data System (ADS)

    Pineda, Jorge

    2015-10-01

    We propose to obtain the first complete, velocity resolved [CII] 158um image of the M51 grand-design spiral galaxy with the upGREAT and FIFI-LS instruments on SOFIA. Spiral density waves play a fundamental role on the conversion of atomic to molecular gas, leading to gravitational contraction and thus to star formation. Understanding the impact of spiral density waves on the lifecycle of the interstellar medium and on star formation in galaxies is thus critical for our understanding of galaxy evolution. The [CII] line (in combination with the low-J CO lines and HI 21 cm) is an important tool to diagnose the physical state of the ISM. It can reveal the distribution of the gas that is making a transition between atomic and molecular phases, including the CO-dark H2 gas (hydrogen molecular but carbon ionized, and thus not traced by either HI or CO) in the spiral arms and interarm regions of M51. We will use the high spectral resolution of the upGREAT instrument to resolve spiral arms in velocity, allowing us to study the flow of gas through spiral arms and measure line widths and determine the dynamical state of prominent interarm clouds. The significantly more sensitive FIFI-LS will be used to detect extended faint [CII] emission in the interarm regions and outskirts of the galaxy, including the gas connection to the companion galaxy. The 3-D data cube of velocity--resolved [CII] in this nearby galaxy, combined with the wealth of ancillary data, can be used for a large set of investigations by the broader astronomical community. It will provide for the first time the link between the detailed physical processes in the star-forming ISM in the Milky Way and the average properties of distant external galaxies. This complete map will be also an excellent showcase of SOFIA's capabilities for years to come.

  12. From Surface Data to 3D Geologic Maps

    NASA Astrophysics Data System (ADS)

    Dhont, D.; Luxey, P.; Longuesserre, V.; Monod, B.; Guillaume, B.

    2008-12-01

    New trends in earth sciences are mostly related to technologies allowing graphical representations of the geology in 3D. However, the concept of 3D geologic map is commonly misused. For instance, displays of geologic maps draped onto DEM in rotating perspective views have been misleadingly called 3D geologic maps, but this still cannot provide any volumetric underground information as a true 3D geologic map should. Here, we present a way to produce mathematically and geometrically correct 3D geologic maps constituted by the volume and shape of all geologic features of a given area. The originality of the method is that it is based on the integration of surface data only consisting of (1) geologic maps, (2) satellite images, (3) DEM and (4) bedding dips and strikes. To generate 3D geologic maps, we used a 3D geologic modeler that combines and extrapolates the surface information into a coherent 3D data set. The significance of geometrically correct 3D geologic maps is demonstrated for various geologic settings and applications. 3D models are of primarily importance for educational purposes because they reveal features that standard 2D geologic maps by themselves could not show. The 3D visualization helps in the understanding of the geometrical relationship between the different geologic features and, in turn, for the quantification of the geology at the regional scale. Furthermore, given the logistical challenges associated with modern oil and mineral exploration in remote and rugged terrain, these volume-based models can provide geological and commercial insight prior to seismic evaluation.

  13. Interactive mapping on 3-D terrain models

    NASA Astrophysics Data System (ADS)

    Bernardin, T.; Cowgill, E.; Gold, R.; Hamann, B.; Kreylos, O.; Schmitt, A.

    2006-10-01

    We present an interactive, real-time mapping system for use with digital elevation models and remotely sensed multispectral imagery that aids geoscientists in the creation and interpretation of geologic/neotectonic maps at length scales of 10 m to 1000 km. Our system provides a terrain visualization of the surface of the Earth or other terrestrial planets by displaying a virtual terrain model generated from a digital elevation model overlain by a color texture generated from orthophotos or satellite imagery. We use a quadtree-based, multiresolution display method to render in real time high-resolution virtual terrain models that span large spatial regions. The system allows users to measure the orientations of geologic surfaces and record their observations by drawing lines directly on the virtual terrain model. In addition, interpretive surfaces can be generated from these drawings and displayed to facilitate understanding of the three-dimensional geometry of geologic surfaces. The main strength of our system is the combination of real-time rendering and interactive mapping performed directly on the virtual terrain model with the ability to navigate the scene while changing viewpoints arbitrarily during mapping. User studies and comparisons with commercially available mapping software show that our system improves mapping accuracy and efficiency and also yields observations that cannot be made with existing systems.

  14. Visualizing 3D velocity fields near contour surfaces

    SciTech Connect

    Max, N.; Crawfis, R.; Grant, C.

    1994-03-01

    Vector field rendering is difficult in 3D because the vector icons overlap and hide each other. We propose four different techniques for visualizing vector fields only near surfaces. The first uses motion blurred particles in a thickened region around the surface. The second uses a voxel grid to contain integral curves of the vector field. The third uses many antialiased lines through the surface, and the fourth uses hairs sprouting from the surface and then bending in the direction of the vector field. All the methods use the graphite pipeline, allowing real time rotation and interaction, and the first two methods can animate the texture to move in the flow determined by the velocity field.

  15. The USGS 3D Seismic Velocity Model for Northern California

    NASA Astrophysics Data System (ADS)

    Brocher, T. M.; Aagaard, B.; Simpson, R. W.; Jachens, R. C.

    2006-12-01

    We present a new regional 3D seismic velocity model for Northern California for use in strong motion simulations of the 1906 San Francisco and other earthquakes. The model includes compressional-wave velocity (Vp), shear-wave velocity (Vs), density, and intrinsic attenuation (Qp, Qs). These properties were assigned for each rock type in a 3D geologic model derived from surface outcrops, boreholes, gravity and magnetic data, and seismic reflection, refraction, and tomography studies. A detailed description of the model, USGS Bay Area Velocity Model 05.1.0, is available online [http://www.sf06simulation.org/geology/velocitymodel]. For ground motion simulations Vs and Qs are more important parameters than Vp and Qp because the strongest ground motions are generated chiefly by shear and surface wave arrivals. Because Vp data are more common than Vs data, however, we first developed Vp versus depth relations for each rock type and then converted these to Vs versus depth relations. For the most important rock types in Northern California we compiled measurements of Vp versus depth using borehole logs, laboratory measurements on hand samples, seismic refraction profiles, and tomography models. These rock types include Salinian and Sierran granitic rocks, metagraywackes and greenstones of the Franciscan Complex, Tertiary and Mesozoic sedimentary and volcanic rocks, and Quaternary and Holocene deposits (Brocher, USGS OFR 05-1317, 2005). Vp versus depth curves were converted to Vs versus depth curves using new empirical nonlinear relations between Vs and Vp (Brocher, BSSA, 2005). These relations, showing that Poisson's ratio is a nonlinear function of Vp, were similarly based on compilations of diverse Vs and Vp measurements on a large suite of rock types, mainly from California and the Pacific Northwest. The model is distributed in a discretized form with routines to query the model using C++, C, and Fortran 77 programming languages. The geologic model was discretized at

  16. Vel-IO 3D: A tool for 3D velocity model construction, optimization and time-depth conversion in 3D geological modeling workflow

    NASA Astrophysics Data System (ADS)

    Maesano, Francesco E.; D'Ambrogi, Chiara

    2017-02-01

    We present Vel-IO 3D, a tool for 3D velocity model creation and time-depth conversion, as part of a workflow for 3D model building. The workflow addresses the management of large subsurface dataset, mainly seismic lines and well logs, and the construction of a 3D velocity model able to describe the variation of the velocity parameters related to strong facies and thickness variability and to high structural complexity. Although it is applicable in many geological contexts (e.g. foreland basins, large intermountain basins), it is particularly suitable in wide flat regions, where subsurface structures have no surface expression. The Vel-IO 3D tool is composed by three scripts, written in Python 2.7.11, that automate i) the 3D instantaneous velocity model building, ii) the velocity model optimization, iii) the time-depth conversion. They determine a 3D geological model that is consistent with the primary geological constraints (e.g. depth of the markers on wells). The proposed workflow and the Vel-IO 3D tool have been tested, during the EU funded Project GeoMol, by the construction of the 3D geological model of a flat region, 5700 km2 in area, located in the central part of the Po Plain. The final 3D model showed the efficiency of the workflow and Vel-IO 3D tool in the management of large amount of data both in time and depth domain. A 4 layer-cake velocity model has been applied to a several thousand (5000-13,000 m) thick succession, with 15 horizons from Triassic up to Pleistocene, complicated by a Mesozoic extensional tectonics and by buried thrusts related to Southern Alps and Northern Apennines.

  17. Geological mapping goes 3-D in response to societal needs

    USGS Publications Warehouse

    Thorleifson, H.; Berg, R.C.; Russell, H.A.J.

    2010-01-01

    The transition to 3-D mapping has been made possible by technological advances in digital cartography, GIS, data storage, analysis, and visualization. Despite various challenges, technological advancements facilitated a gradual transition from 2-D maps to 2.5-D draped maps to 3-D geological mapping, supported by digital spatial and relational databases that can be interrogated horizontally or vertically and viewed interactively. Challenges associated with data collection, human resources, and information management are daunting due to their resource and training requirements. The exchange of strategies at the workshops has highlighted the use of basin analysis to develop a process-based predictive knowledge framework that facilitates data integration. Three-dimensional geological information meets a public demand that fills in the blanks left by conventional 2-D mapping. Two-dimensional mapping will, however, remain the standard method for extensive areas of complex geology, particularly where deformed igneous and metamorphic rocks defy attempts at 3-D depiction.

  18. Sodium 3D COncentration MApping (COMA 3D) using 23Na and proton MRI

    NASA Astrophysics Data System (ADS)

    Truong, Milton L.; Harrington, Michael G.; Schepkin, Victor D.; Chekmenev, Eduard Y.

    2014-10-01

    Functional changes of sodium 3D MRI signals were converted into millimolar concentration changes using an open-source fully automated MATLAB toolbox. These concentration changes are visualized via 3D sodium concentration maps, and they are overlaid over conventional 3D proton images to provide high-resolution co-registration for easy correlation of functional changes to anatomical regions. Nearly 5000/h concentration maps were generated on a personal computer (ca. 2012) using 21.1 T 3D sodium MRI brain images of live rats with spatial resolution of 0.8 × 0.8 × 0.8 mm3 and imaging matrices of 60 × 60 × 60. The produced concentration maps allowed for non-invasive quantitative measurement of in vivo sodium concentration in the normal rat brain as a functional response to migraine-like conditions. The presented work can also be applied to sodium-associated changes in migraine, cancer, and other metabolic abnormalities that can be sensed by molecular imaging. The MATLAB toolbox allows for automated image analysis of the 3D images acquired on the Bruker platform and can be extended to other imaging platforms. The resulting images are presented in a form of series of 2D slices in all three dimensions in native MATLAB and PDF formats. The following is provided: (a) MATLAB source code for image processing, (b) the detailed processing procedures, (c) description of the code and all sub-routines, (d) example data sets of initial and processed data. The toolbox can be downloaded at: http://www.vuiis.vanderbilt.edu/~truongm/COMA3D/.

  19. Sodium 3D COncentration MApping (COMA 3D) Using 23Na and Proton MRI

    PubMed Central

    Truong, Milton L.; Harrington, Michael G.; Schepkin, Victor D.; Chekmenev, Eduard Y.

    2014-01-01

    Functional changes of sodium 3D MRI signals were converted into millimolar concentration changes using an open-source fully automated MATLAB toolbox. These concentration changes are visualized via 3D sodium concentration maps, and they are overlaid over conventional 3D proton images to provide high-resolution co-registration for easy correlation of functional changes to anatomical regions. Nearly 5000/hour concentration maps were generated on a personal computer (ca. 2012) using 21.1 T 3D sodium MRI brain images of live rats with spatial resolution of 0.8×0.8×0.8 mm3 and imaging matrices of 60×60×60. The produced concentration maps allowed for non-invasive quantitative measurement of in vivo sodium concentration in the normal rat brain as a functional response to migraine-like conditions. The presented work can also be applied to sodium-associated changes in migraine, cancer, and other metabolic abnormalities that can be sensed by molecular imaging. The MATLAB toolbox allows for automated image analysis of the 3D images acquired on the Bruker platform and can be extended to other imaging platforms. The resulting images are presented in a form of series of 2D slices in all three dimensions in native MATLAB and PDF formats. The following is provided: (a) MATLAB source code for image processing, (b) the detailed processing procedures, (c) description of the code and all sub-routines, (d) example data sets of initial and processed data. The toolbox can be downloaded at: http://www.vuiis.vanderbilt.edu/~truongm/COMA3D/ PMID:25261742

  20. Uncertainty assessment of 3D instantaneous velocity model from stack velocities

    NASA Astrophysics Data System (ADS)

    Emanuele Maesano, Francesco; D'Ambrogi, Chiara

    2015-04-01

    3D modelling is a powerful tool that is experiencing increasing applications in data analysis and dissemination. At the same time the need of quantitative uncertainty evaluation is strongly requested in many aspects of the geological sciences and by the stakeholders. In many cases the starting point for 3D model building is the interpretation of seismic profiles that provide indirect information about the geology of the subsurface in the domain of time. The most problematic step in the 3D modelling construction is the conversion of the horizons and faults interpreted in time domain to the depth domain. In this step the dominant variable that could lead to significantly different results is the velocity. The knowledge of the subsurface velocities is related mainly to punctual data (sonic logs) that are often sparsely distributed in the areas covered by the seismic interpretation. The extrapolation of velocity information to wide extended horizons is thus a critical step to obtain a 3D model in depth that can be used for predictive purpose. In the EU-funded GeoMol Project, the availability of a dense network of seismic lines (confidentially provided by ENI S.p.A.) in the Central Po Plain, is paired with the presence of 136 well logs, but few of them have sonic logs and in some portion of the area the wells are very widely spaced. The depth conversion of the 3D model in time domain has been performed testing different strategies for the use and the interpolation of velocity data. The final model has been obtained using a 4 layer cake 3D instantaneous velocity model that considers both the initial velocity (v0) in every reference horizon and the gradient of velocity variation with depth (k). Using this method it is possible to consider the geological constraint given by the geometries of the horizons and the geo-statistical approach to the interpolation of velocities and gradient. Here we present an experiment based on the use of set of pseudo-wells obtained from the

  1. Analysis of the 3D Structure and Velocity of a CME on 2 January 2008

    NASA Astrophysics Data System (ADS)

    López, F. M.; Cremades, H.

    We perform an analysis of the 3D structure and velocity of a CME (coronal mass ejection) ejected on 2 January 2008. The event was imaged by both STEREO A and B spacecraft (mutual separation of ˜44°), providing polarized images of the event from two different points of view. To obtain information on the 3D structure of the CME from polarized images, a polarization technique (Moran & Davila, Science 305, 66, 2003) is applied. Aided by this method, we have constructed topographical maps which show the height of the various event features from the plane of the sky (i.e. toward or away from the observer) and have dinamically analyzed and compared the real and projected on the plane of the sky velocities.

  2. MSV3d: database of human MisSense Variants mapped to 3D protein structure.

    PubMed

    Luu, Tien-Dao; Rusu, Alin-Mihai; Walter, Vincent; Ripp, Raymond; Moulinier, Luc; Muller, Jean; Toursel, Thierry; Thompson, Julie D; Poch, Olivier; Nguyen, Hoan

    2012-01-01

    The elucidation of the complex relationships linking genotypic and phenotypic variations to protein structure is a major challenge in the post-genomic era. We present MSV3d (Database of human MisSense Variants mapped to 3D protein structure), a new database that contains detailed annotation of missense variants of all human proteins (20 199 proteins). The multi-level characterization includes details of the physico-chemical changes induced by amino acid modification, as well as information related to the conservation of the mutated residue and its position relative to functional features in the available or predicted 3D model. Major releases of the database are automatically generated and updated regularly in line with the dbSNP (database of Single Nucleotide Polymorphism) and SwissVar releases, by exploiting the extensive Décrypthon computational grid resources. The database (http://decrypthon.igbmc.fr/msv3d) is easily accessible through a simple web interface coupled to a powerful query engine and a standard web service. The content is completely or partially downloadable in XML or flat file formats. Database URL: http://decrypthon.igbmc.fr/msv3d.

  3. UCVM: Open Source Software for Understanding and Delivering 3D Velocity Models

    NASA Astrophysics Data System (ADS)

    Gill, D.; Small, P.; Maechling, P. J.; Jordan, T. H.; Shaw, J. H.; Plesch, A.; Chen, P.; Lee, E. J.; Taborda, R.; Olsen, K. B.; Callaghan, S.

    2014-12-01

    Physics-based ground motion simulations can calculate the propagation of earthquake waves through 3D velocity models of the Earth. The Southern California Earthquake Center (SCEC) has developed the Unified Community Velocity Model (UCVM) framework to help researchers build structured or unstructured velocity meshes from 3D velocity models for use in wave propagation simulations. The UCVM software framework makes it easy to extract P and S wave propagation speeds and other material properties from 3D velocity models by providing a common interface through which researchers can query earth models for a given location and depth. Currently, the platform supports multiple California models, including SCEC CVM-S4 and CVM-H 11.9.1, and has been designed to support models from any region on earth. UCVM is currently being use to generate velocity meshes for many SCEC wave propagation codes, including AWP-ODC-SGT and Hercules. In this presentation, we describe improvements to the UCVM software. The current version, UCVM 14.3.0, released in March of 2014, supports the newest Southern California velocity model, CVM-S4.26, which was derived from 26 full-3D tomographic iterations using CVM-S4 as the starting model (Lee et al., this meeting), and the Broadband 1D velocity model used in the CyberShake 14.2 study. We have ported UCVM to multiple Linux distributions and OS X. Also included in this release is the ability to add small-scale stochastic heterogeneities to extract Cartesian meshes for use in high-frequency ground motion simulations. This tool was built using the C language open-source FFT library, FFTW. The stochastic parameters (Hurst exponent, correlation length, and the horizontal/vertical aspect ratio) can be customized by the user. UCVM v14.3.0 also provides visualization scripts for constructing cross-sections, horizontal slices, basin depths, and Vs30 maps. The interface allows researchers to visually review velocity models . Also, UCVM v14.3.0 can extract

  4. Automatic Texture Mapping of Architectural and Archaeological 3d Models

    NASA Astrophysics Data System (ADS)

    Kersten, T. P.; Stallmann, D.

    2012-07-01

    Today, detailed, complete and exact 3D models with photo-realistic textures are increasingly demanded for numerous applications in architecture and archaeology. Manual texture mapping of 3D models by digital photographs with software packages, such as Maxon Cinema 4D, Autodesk 3Ds Max or Maya, still requires a complex and time-consuming workflow. So, procedures for automatic texture mapping of 3D models are in demand. In this paper two automatic procedures are presented. The first procedure generates 3D surface models with textures by web services, while the second procedure textures already existing 3D models with the software tmapper. The program tmapper is based on the Multi Layer 3D image (ML3DImage) algorithm and developed in the programming language C++. The studies showing that the visibility analysis using the ML3DImage algorithm is not sufficient to obtain acceptable results of automatic texture mapping. To overcome the visibility problem the Point Cloud Painter algorithm in combination with the Z-buffer-procedure will be applied in the future.

  5. UCVM: An Open Source Software Package for Querying and Visualizing 3D Velocity Models

    NASA Astrophysics Data System (ADS)

    Gill, D.; Small, P.; Maechling, P. J.; Jordan, T. H.; Shaw, J. H.; Plesch, A.; Chen, P.; Lee, E. J.; Taborda, R.; Olsen, K. B.; Callaghan, S.

    2015-12-01

    Three-dimensional (3D) seismic velocity models provide foundational data for ground motion simulations that calculate the propagation of earthquake waves through the Earth. The Southern California Earthquake Center (SCEC) has developed the Unified Community Velocity Model (UCVM) package for both Linux and OS X. This unique framework provides a cohesive way for querying and visualizing 3D models. UCVM v14.3.0, supports many Southern California velocity models including CVM-S4, CVM-H 11.9.1, and CVM-S4.26. The last model was derived from 26 full-3D tomographic iterations on CVM-S4. Recently, UCVM has been used to deliver a prototype of a new 3D model of central California (CCA) also based on full-3D tomographic inversions. UCVM was used to provide initial plots of this model and will be used to deliver CCA to users when the model is publicly released. Visualizing models is also possible with UCVM. Integrated within the platform are plotting utilities that can generate 2D cross-sections, horizontal slices, and basin depth maps. UCVM can also export models in NetCDF format for easy import into IDV and ParaView. UCVM has also been prototyped to export models that are compatible with IRIS' new Earth Model Collaboration (EMC) visualization utility. This capability allows for user-specified horizontal slices and cross-sections to be plotted in the same 3D Earth space. UCVM was designed to help a wide variety of researchers. It is currently being use to generate velocity meshes for many SCEC wave propagation codes, including AWP-ODC-SGT and Hercules. It is also used to provide the initial input to SCEC's CyberShake platform. For those interested in specific data points, the software framework makes it easy to extract P and S wave propagation speeds and other material properties from 3D velocity models by providing a common interface through which researchers can query earth models for a given location and depth. Also included in the last release was the ability to add small

  6. A 3D digital map of rat brain.

    PubMed

    Toga, A W; Santori, E M; Hazani, R; Ambach, K

    1995-01-01

    A three dimensional (3D) computerized map of rat brain anatomy created with digital imaging techniques is described. Six male Sprague-Dawley rats, weighing 270-320 g, were used in the generation of this atlas. Their heads were frozen, and closely spaced cryosectional images were digitally captured. Each serial data set was organized into a digital volume, reoriented into a flat skull position, and brought into register with each other. A volume representative of the group following registration was chosen based on its anatomic correspondence with the other specimens as measured by image correlation coefficients and landmark matching. Mean positions of lambda, bregma, and the interaural plane of the group within the common coordinate system were used to transform the representative volume into a 3D map of rat neuroanatomy. images reconstructed from this 3D map are available to the public via Internet with an anonymous file transfer protocol (FTP) and World Wide Web. A complete description of the digital map is provided in a comprehensive set of sagittal planes (up to 0.031 mm spacing) containing stereotaxic reference grids. Sets of coronal and horizontal planes, resampled at the same increment, also are included. Specific anatomic features are identified in a second collection of images. Stylized anatomic boundaries and structural labels were incorporated into selected orthogonal planes. Electronic sharing and interactive use are benefits afforded by a digital format, but the foremost advantage of this 3D map is its whole brain integrated representation of rat in situ neuroanatomy.

  7. The 3D velocity structure beneath Iceland: Identifying melt pathways

    NASA Astrophysics Data System (ADS)

    Allen, R.

    2003-04-01

    The integration of various seismic datasets, recorded by the broadband HOTSPOT network deployed across Iceland, provides one of the highest resolution studies of the crust and mantle structure associated with a plume-ridge system. The mantle P- and S-velocity models (ICEMAN), derived from teleseismic body-wave and surface wave analysis, show a vertical, cylindrical low velocity anomaly ˜200 km in diameter extending from ˜400 km, the maximum depth of resolution, up to ˜200 km above which low velocity material is present beneath all of Iceland. The maximum P- and S-velocity anomalies of -2% and -4% respectively are found beneath the northwestern edge of Vatnajokull. The crustal S-velocity model (ICECRTb) is constrained by local surface waves, refraction experiments and receiver functions, and shows significant variation in crustal thickness. The thinnest, ˜15 km, crust is found around coastal regions, the thickest crust is beneath northwestern Vatnajokull where it reaches a thickness of 45 km. Within this thick crustal root is a vertical low velocity anomaly connecting the core of the mantle anomaly to horizontal low velocity regions that extend along the western and eastern volcanic zones but not the northern volcanic zone. These crustal low velocity zones are interpreted as regions through which melt is fed from the mantle to shallow magma chambers beneath the rift zones, where crustal formation occurs. The pipework between the core of the mantle anomaly and the southern rift zones is responsible for ˜30 km thick crust. Its absence to the north results in relatively thin, ˜20 km thick, crust.

  8. 3D Regression Heat Map Analysis of Population Study Data.

    PubMed

    Klemm, Paul; Lawonn, Kai; Glaßer, Sylvia; Niemann, Uli; Hegenscheid, Katrin; Völzke, Henry; Preim, Bernhard

    2016-01-01

    Epidemiological studies comprise heterogeneous data about a subject group to define disease-specific risk factors. These data contain information (features) about a subject's lifestyle, medical status as well as medical image data. Statistical regression analysis is used to evaluate these features and to identify feature combinations indicating a disease (the target feature). We propose an analysis approach of epidemiological data sets by incorporating all features in an exhaustive regression-based analysis. This approach combines all independent features w.r.t. a target feature. It provides a visualization that reveals insights into the data by highlighting relationships. The 3D Regression Heat Map, a novel 3D visual encoding, acts as an overview of the whole data set. It shows all combinations of two to three independent features with a specific target disease. Slicing through the 3D Regression Heat Map allows for the detailed analysis of the underlying relationships. Expert knowledge about disease-specific hypotheses can be included into the analysis by adjusting the regression model formulas. Furthermore, the influences of features can be assessed using a difference view comparing different calculation results. We applied our 3D Regression Heat Map method to a hepatic steatosis data set to reproduce results from a data mining-driven analysis. A qualitative analysis was conducted on a breast density data set. We were able to derive new hypotheses about relations between breast density and breast lesions with breast cancer. With the 3D Regression Heat Map, we present a visual overview of epidemiological data that allows for the first time an interactive regression-based analysis of large feature sets with respect to a disease.

  9. 3-D MAPPING TECHNOLOGIES FOR HIGH LEVEL WASTE TANKS

    SciTech Connect

    Marzolf, A.; Folsom, M.

    2010-08-31

    This research investigated four techniques that could be applicable for mapping of solids remaining in radioactive waste tanks at the Savannah River Site: stereo vision, LIDAR, flash LIDAR, and Structure from Motion (SfM). Stereo vision is the least appropriate technique for the solids mapping application. Although the equipment cost is low and repackaging would be fairly simple, the algorithms to create a 3D image from stereo vision would require significant further development and may not even be applicable since stereo vision works by finding disparity in feature point locations from the images taken by the cameras. When minimal variation in visual texture exists for an area of interest, it becomes difficult for the software to detect correspondences for that object. SfM appears to be appropriate for solids mapping in waste tanks. However, equipment development would be required for positioning and movement of the camera in the tank space to enable capturing a sequence of images of the scene. Since SfM requires the identification of distinctive features and associates those features to their corresponding instantiations in the other image frames, mockup testing would be required to determine the applicability of SfM technology for mapping of waste in tanks. There may be too few features to track between image frame sequences to employ the SfM technology since uniform appearance may exist when viewing the remaining solids in the interior of the waste tanks. Although scanning LIDAR appears to be an adequate solution, the expense of the equipment ($80,000-$120,000) and the need for further development to allow tank deployment may prohibit utilizing this technology. The development would include repackaging of equipment to permit deployment through the 4-inch access ports and to keep the equipment relatively uncontaminated to allow use in additional tanks. 3D flash LIDAR has a number of advantages over stereo vision, scanning LIDAR, and SfM, including full frame

  10. Direct ambient noise tomography for 3-D near surface shear velocity structure: methodology and applications

    NASA Astrophysics Data System (ADS)

    Yao, H.; Fang, H.; Li, C.; Liu, Y.; Zhang, H.; van der Hilst, R. D.; Huang, Y. C.

    2014-12-01

    Ambient noise tomography has provided essential constraints on crustal and uppermost mantle shear velocity structure in global seismology. Recent studies demonstrate that high frequency (e.g., ~ 1 Hz) surface waves between receivers at short distances can be successfully retrieved from ambient noise cross-correlation and then be used for imaging near surface or shallow crustal shear velocity structures. This approach provides important information for strong ground motion prediction in seismically active area and overburden structure characterization in oil and gas fields. Here we propose a new tomographic method to invert all surface wave dispersion data for 3-D variations of shear wavespeed without the intermediate step of phase or group velocity maps.The method uses frequency-dependent propagation paths and a wavelet-based sparsity-constrained tomographic inversion. A fast marching method is used to compute, at each period, surface wave traveltimes and ray paths between sources and receivers. This avoids the assumption of great-circle propagation that is used in most surface wave tomographic studies, but which is not appropriate in complex media. The wavelet coefficients of the velocity model are estimated with an iteratively reweighted least squares (IRLS) algorithm, and upon iterations the surface wave ray paths and the data sensitivity matrix are updated from the newly obtained velocity model. We apply this new method to determine the 3-D near surface wavespeed variations in the Taipei basin of Taiwan, Hefei urban area and a shale and gas production field in China using the high-frequency interstation Rayleigh wave dispersion data extracted from ambient noisecross-correlation. The results reveal strong effects of off-great-circle propagation of high-frequency surface waves in these regions with above 30% shear wavespeed variations. The proposed approach is more efficient and robust than the traditional two-step surface wave tomography for imaging complex

  11. Lidar on small UAV for 3D mapping

    NASA Astrophysics Data System (ADS)

    Tulldahl, H. Michael; Larsson, Hâkan

    2014-10-01

    Small UAV:s (Unmanned Aerial Vehicles) are currently in an explosive technical development phase. The performance of UAV-system components such as inertial navigation sensors, propulsion, control processors and algorithms are gradually improving. Simultaneously, lidar technologies are continuously developing in terms of reliability, accuracy, as well as speed of data collection, storage and processing. The lidar development towards miniature systems with high data rates has, together with recent UAV development, a great potential for new three dimensional (3D) mapping capabilities. Compared to lidar mapping from manned full-size aircraft a small unmanned aircraft can be cost efficient over small areas and more flexible for deployment. An advantage with high resolution lidar compared to 3D mapping from passive (multi angle) photogrammetry is the ability to penetrate through vegetation and detect partially obscured targets. Another advantage is the ability to obtain 3D data over the whole survey area, without the limited performance of passive photogrammetry in low contrast areas. The purpose of our work is to demonstrate 3D lidar mapping capability from a small multirotor UAV. We present the first experimental results and the mechanical and electrical integration of the Velodyne HDL-32E lidar on a six-rotor aircraft with a total weight of 7 kg. The rotating lidar is mounted at an angle of 20 degrees from the horizontal plane giving a vertical field-of-view of 10-50 degrees below the horizon in the aircraft forward directions. For absolute positioning of the 3D data, accurate positioning and orientation of the lidar sensor is of high importance. We evaluate the lidar data position accuracy both based on inertial navigation system (INS) data, and on INS data combined with lidar data. The INS sensors consist of accelerometers, gyroscopes, GPS, magnetometers, and a pressure sensor for altimetry. The lidar range resolution and accuracy is documented as well as the

  12. Sensing and 3D Mapping of Soil Compaction

    PubMed Central

    Tekin, Yücel; Kul, Basri; Okursoy, Rasim

    2008-01-01

    Soil compaction is an important physical limiting factor for the root growth and plant emergence and is one of the major causes for reduced crop yield worldwide. The objective of this study was to generate 2D/3D soil compaction maps for different depth layers of the soil. To do so, a soil penetrometer was designed, which was mounted on the three-point hitch of an agricultural tractor, consisting of a mechanical system, data acquisition system (DAS), and 2D/3D imaging and analysis software. The system was successfully tested in field conditions, measuring soil penetration resistances as a function of depth from 0 to 40 cm at 1 cm intervals. The software allows user to either tabulate the measured quantities or generate maps as soon as data collection has been terminated. The system may also incorporate GPS data to create geo-referenced soil maps. The software enables the user to graph penetration resistances at a specified coordinate. Alternately, soil compaction maps could be generated using data collected from multiple coordinates. The data could be automatically stratified to determine soil compaction distribution at different layers of 5, 10,.…, 40 cm depths. It was concluded that the system tested in this study could be used to assess the soil compaction at topsoil and the randomly distributed hardpan formations just below the common tillage depths, enabling visualization of spatial variability through the imaging software. PMID:27879888

  13. 3D map of the human corneal endothelial cell

    PubMed Central

    He, Zhiguo; Forest, Fabien; Gain, Philippe; Rageade, Damien; Bernard, Aurélien; Acquart, Sophie; Peoc’h, Michel; Defoe, Dennis M.; Thuret, Gilles

    2016-01-01

    Corneal endothelial cells (CECs) are terminally differentiated cells, specialized in regulating corneal hydration and transparency. They are highly polarized flat cells that separate the cornea from the aqueous humor. Their apical surface, in contact with aqueous humor is hexagonal, whereas their basal surface is irregular. We characterized the structure of human CECs in 3D using confocal microscopy of immunostained whole corneas in which cells and their interrelationships remain intact. Hexagonality of the apical surface was maintained by the interaction between tight junctions and a submembraneous network of actomyosin, braced like a drum. Lateral membranes, which support enzymatic pumps, presented complex expansions resembling interdigitated foot processes at the basal surface. Using computer-aided design and drafting software, we obtained a first simplified 3D model of CECs. By comparing their expression with those in epithelial, stromal and trabecular corneal cells, we selected 9 structural or functional proteins for which 3D patterns were specific to CECs. This first 3D map aids our understanding of the morphologic and functional specificity of CECs and could be used as a reference for characterizing future cell therapy products destined to treat endothelial dysfunctions. PMID:27381832

  14. Measurements of 3D slip velocities and plasma column lengths of a gliding arc discharge

    SciTech Connect

    Zhu, Jiajian; Gao, Jinlong; Ehn, Andreas; Aldén, Marcus; Li, Zhongshan E-mail: alpers@ma.tum.de; Moseev, Dmitry; Kusano, Yukihiro; Salewski, Mirko; Alpers, Andreas E-mail: alpers@ma.tum.de; Gritzmann, Peter; Schwenk, Martin

    2015-01-26

    A non-thermal gliding arc discharge was generated at atmospheric pressure in an air flow. The dynamics of the plasma column and tracer particles were recorded using two synchronized high-speed cameras. Whereas the data analysis for such systems has previously been performed in 2D (analyzing the single camera image), we provide here a 3D data analysis that includes 3D reconstructions of the plasma column and 3D particle tracking velocimetry based on discrete tomography methods. The 3D analysis, in particular, the determination of the 3D slip velocity between the plasma column and the gas flow, gives more realistic insight into the convection cooling process. Additionally, with the determination of the 3D slip velocity and the 3D length of the plasma column, we give more accurate estimates for the drag force, the electric field strength, the power per unit length, and the radius of the conducting zone of the plasma column.

  15. Geomorphological maps and 3d models in cave research

    NASA Astrophysics Data System (ADS)

    Ballesteros, Daniel; Jiménez-Sánchez, Montserrat; José Domínguez-Cuesta, María

    2013-04-01

    Cave geomorphological processes and features can be studied by geomorphological maps although topographic maps, aerial photos and GPS are not available. Methods in cave geomorphological mapping are conditioned by cave environment configuration, the need of using speleological techniques, and limitations arising from the projection of the 3D data from the cave to a 2D plan. Some of our previous works in the Cantabrian Mountains and Cantabrian Coast (NW Spain) established the approach of the design of cave geomorphological maps and its legend. Today we are improving the display of cave process combining geomorphological maps and 3d models based on the experience obtained from the research of one cave from the Cantabrian Coast and four caves in the Picos de Europa National Park (funded by GEOCAVE project, Spanish National Parks Agency). The five caves are developed in Carboniferous limestone affected by faults and thrusts. The method of work includes: 1) the elaboration of the cave survey at 1:50 to 1:500 scale; 2) the check of the cave survey of three caves by closed loops; 3) the mapping of cave features based on the performed survey; 4) the 3d modeling of the caves approximating each survey shoot by an octagonal prism; and 5) the implementation and management of the survey and geomorphological map in a Geographic Information System. Based on the survey, the cavities are small caves to deep alpine shafts with 281 to 4,438 m length and up to 738 m deep. The precision of the cave maps only could be estimated in two caves at a cavity scale, displaying both of them a 2.49 % error. The prisms of the 3d model was classified into four groups according to the morphology of the cave passage: 1) canyons, 2) phreatic and epiphreatic tubes, 3) soutirage conduits, 4) mixed forms composed by phreatic and epiphreatic tubes modified by fluvial incision, 5) pitches and 6) irregular passages enlarged strongly by gravity process. According to our previous works geomorphological

  16. 3D Gel Map of Arabidopsis Complex I

    PubMed Central

    Peters, Katrin; Belt, Katharina; Braun, Hans-Peter

    2013-01-01

    Complex I has a unique structure in plants and includes extra subunits. Here, we present a novel study to define its protein constituents. Mitochondria were isolated from Arabidopsis thaliana cell cultures, leaves, and roots. Subunits of complex I were resolved by 3D blue-native (BN)/SDS/SDS-PAGE and identified by mass spectrometry. Overall, 55 distinct proteins were found, seven of which occur in pairs of isoforms. We present evidence that Arabidopsis complex I consists of 49 distinct types of subunits, 40 of which represent homologs of bovine complex I. The nine other subunits represent special proteins absent in the animal linage of eukaryotes, most prominently a group of subunits related to bacterial gamma-type carbonic anhydrases. A GelMap http://www.gelmap.de/arabidopsis-3d-complex-i/ is presented for promoting future complex I research in Arabidopsis thaliana. PMID:23761796

  17. The 3D Space and Spin Velocities of a Gamma-ray Pulsar

    NASA Astrophysics Data System (ADS)

    Romani, Roger W.

    2016-04-01

    PSR J2030+4415 is a LAT-discovered 0.5My-old gamma-ray pulsar with an X-ray synchrotron trail and a rare Halpha bowshock. We have obtained GMOS IFU spectroscopic imaging of this shell, and show a sweep through the remarkable Halpha structure, comparing with the high energy emission. These data provide a unique 3D map of the momentum distribution of the relativistic pulsar wind. This shows that the pulsar is moving nearly in the plane of the sky and that the pulsar wind has a polar component misaligned with the space velocity. The spin axis is shown to be inclined some 95degrees to the Earth line of sight, explaining why this is a radio-quiet, gamma-only pulsar. Intriguingly, the shell also shows multiple bubbles that suggest that the pulsar wind power has varied substantially over the past 500 years.

  18. Sodium Velocity Maps on Mercury

    NASA Technical Reports Server (NTRS)

    Potter, A. E.; Killen, R. M.

    2011-01-01

    The objective of the current work was to measure two-dimensional maps of sodium velocities on the Mercury surface and examine the maps for evidence of sources or sinks of sodium on the surface. The McMath-Pierce Solar Telescope and the Stellar Spectrograph were used to measure Mercury spectra that were sampled at 7 milliAngstrom intervals. Observations were made each day during the period October 5-9, 2010. The dawn terminator was in view during that time. The velocity shift of the centroid of the Mercury emission line was measured relative to the solar sodium Fraunhofer line corrected for radial velocity of the Earth. The difference between the observed and calculated velocity shift was taken to be the velocity vector of the sodium relative to Earth. For each position of the spectrograph slit, a line of velocities across the planet was measured. Then, the spectrograph slit was stepped over the surface of Mercury at 1 arc second intervals. The position of Mercury was stabilized by an adaptive optics system. The collection of lines were assembled into an images of surface reflection, sodium emission intensities, and Earthward velocities over the surface of Mercury. The velocity map shows patches of higher velocity in the southern hemisphere, suggesting the existence of sodium sources there. The peak earthward velocity occurs in the equatorial region, and extends to the terminator. Since this was a dawn terminator, this might be an indication of dawn evaporation of sodium. Leblanc et al. (2008) have published a velocity map that is similar.

  19. An industrial light-field camera applied for 3D velocity measurements in a slot jet

    NASA Astrophysics Data System (ADS)

    Seredkin, A. V.; Shestakov, M. V.; Tokarev, M. P.

    2016-10-01

    Modern light-field cameras have found their application in different areas like photography, surveillance and quality control in industry. A number of studies have been reported relatively low spatial resolution of 3D profiles of registered objects along the optical axis of the camera. This article describes a method for 3D velocity measurements in fluid flows using an industrial light-field camera and an alternative reconstruction algorithm based on a statistical approach. This method is more accurate than triangulation when applied for tracking small registered objects like tracer particles in images. The technique was used to measure 3D velocity fields in a turbulent slot jet.

  20. Effects of 3D random correlated velocity perturbations on predicted ground motions

    USGS Publications Warehouse

    Hartzell, S.; Harmsen, S.; Frankel, A.

    2010-01-01

    Three-dimensional, finite-difference simulations of a realistic finite-fault rupture on the southern Hayward fault are used to evaluate the effects of random, correlated velocity perturbations on predicted ground motions. Velocity perturbations are added to a three-dimensional (3D) regional seismic velocity model of the San Francisco Bay Area using a 3D von Karman random medium. Velocity correlation lengths of 5 and 10 km and standard deviations in the velocity of 5% and 10% are considered. The results show that significant deviations in predicted ground velocities are seen in the calculated frequency range (≤1 Hz) for standard deviations in velocity of 5% to 10%. These results have implications for the practical limits on the accuracy of scenario ground-motion calculations and on retrieval of source parameters using higher-frequency, strong-motion data.

  1. Velocity and Density Models Incorporating the Cascadia Subduction Zone for 3D Earthquake Ground Motion Simulations

    USGS Publications Warehouse

    Stephenson, William J.

    2007-01-01

    INTRODUCTION In support of earthquake hazards and ground motion studies in the Pacific Northwest, three-dimensional P- and S-wave velocity (3D Vp and Vs) and density (3D rho) models incorporating the Cascadia subduction zone have been developed for the region encompassed from about 40.2?N to 50?N latitude, and from about -122?W to -129?W longitude. The model volume includes elevations from 0 km to 60 km (elevation is opposite of depth in model coordinates). Stephenson and Frankel (2003) presented preliminary ground motion simulations valid up to 0.1 Hz using an earlier version of these models. The version of the model volume described here includes more structural and geophysical detail, particularly in the Puget Lowland as required for scenario earthquake simulations in the development of the Seattle Urban Hazards Maps (Frankel and others, 2007). Olsen and others (in press) used the model volume discussed here to perform a Cascadia simulation up to 0.5 Hz using a Sumatra-Andaman Islands rupture history. As research from the EarthScope Program (http://www.earthscope.org) is published, a wealth of important detail can be added to these model volumes, particularly to depths of the upper-mantle. However, at the time of development for this model version, no EarthScope-specific results were incorporated. This report is intended to be a reference for colleagues and associates who have used or are planning to use this preliminary model in their research. To this end, it is intended that these models will be considered a beginning template for a community velocity model of the Cascadia region as more data and results become available.

  2. 3-D seismic velocity and attenuation structures in the geothermal field

    SciTech Connect

    Nugraha, Andri Dian; Syahputra, Ahmad; Fatkhan,; Sule, Rachmat

    2013-09-09

    We conducted delay time tomography to determine 3-D seismic velocity structures (Vp, Vs, and Vp/Vs ratio) using micro-seismic events in the geothermal field. The P-and S-wave arrival times of these micro-seismic events have been used as input for the tomographic inversion. Our preliminary seismic velocity results show that the subsurface condition of geothermal field can be fairly delineated the characteristic of reservoir. We then extended our understanding of the subsurface physical properties through determining of attenuation structures (Qp, Qs, and Qs/Qp ratio) using micro-seismic waveform. We combined seismic velocities and attenuation structures to get much better interpretation of the reservoir characteristic. Our preliminary attanuation structures results show reservoir characterization can be more clearly by using the 3-D attenuation model of Qp, Qs, and Qs/Qp ratio combined with 3-D seismic velocity model of Vp, Vs, and Vp/Vs ratio.

  3. A genetic algorithm particle pairing technique for 3D velocity field extraction in holographic particle image velocimetry

    NASA Astrophysics Data System (ADS)

    Sheng, J.; Meng, H.

    This research explores a novel technique, using Genetic Algorithm Particle Pairing (GAPP) to extract three-dimensional (3D) velocity fields of complex flows. It is motivated by Holographic Particle Image Velocimetry (HPIV), in which intrinsic speckle noise hinders the achievement of high particle density required for conventional correlation methods in extracting 3D velocity fields, especially in regions with large velocity gradients. The GA particle pairing method maps particles recorded at the first exposure to those at the second exposure in a 3D space, providing one velocity vector for each particle pair instead of seeking statistical averaging. Hence, particle pairing can work with sparse seeding and complex 3D velocity fields. When dealing with a large number of particles from two instants, however, the accuracy of pairing results and processing speed become major concerns. Using GA's capability to search a large solution space parallelly, our algorithm can efficiently find the best mapping scenarios among a large number of possible particle pairing schemes. During GA iterations, different pairing schemes or solutions are evaluated based on fluid dynamics. Two types of evaluation functions are proposed, tested, and embedded into the GA procedures. Hence, our Genetic Algorithm Particle Pairing (GAPP) technique is characterized by robustness in velocity calculation, high spatial resolution, good parallelism in handling large data sets, and high processing speed on parallel architectures. It has been successfully tested on a simple HPIV measurement of a real trapped vortex flow as well as a series of numerical experiments. In this paper, we introduce the principle of GAPP, analyze its performance under different parameters, and evaluate its processing speed on different computer architectures.

  4. 3D velocity measurement by a single camera using Doppler phase-shifting holography

    NASA Astrophysics Data System (ADS)

    Ninomiya, Nao; Kubo, Yamato; Barada, Daisuke; Kiire, Tomohiro

    2016-10-01

    In order to understand the details of the flow field in micro- and nano-fluidic devices, it is necessary to measure the 3D velocities under a microscopy. Thus, there is a strong need for the development of a new measuring technique for 3D velocity by a single camera. One solution is the use of holography, but it is well known that the accuracy in the depth direction is very poor for the commonly used in-line holography. At present, the Doppler phase-shifting holography is used for the 3D measurement of an object. This method extracts the signal of a fixed frequency caused by the Doppler beat between the object light and the reference light. It can measure the 3D shape precisely. Here, the frequency of the Doppler beat is determined by the velocity difference between the object light and the reference light. This implies that the velocity of an object can be calculated by the Doppler frequency. In this study, a Japanese 5 yen coin was traversed at a constant speed and its holography has been observed by a high-speed camera. By extracting only the first order diffraction signal at the Doppler frequency, a precise measurement of the shape and the position of a 5 yen coin has been achieved. At the same time, the longitudinal velocity of a 5 yen coin can be measured by the Doppler frequency. Furthermore, the lateral velocities are obtained by particle image velocimetry (PIV) method. A 5 yen coin has been traversed at different angles and its shapes and the 3D velocities have been measured accurately. This method can be applied to the particle flows in the micro- or nano-devices, and the 3D velocities will be measured under microscopes.

  5. Georeferenced LiDAR 3D Vine Plantation Map Generation

    PubMed Central

    Llorens, Jordi; Gil, Emilio; Llop, Jordi; Queraltó, Meritxell

    2011-01-01

    The use of electronic devices for canopy characterization has recently been widely discussed. Among such devices, LiDAR sensors appear to be the most accurate and precise. Information obtained with LiDAR sensors during reading while driving a tractor along a crop row can be managed and transformed into canopy density maps by evaluating the frequency of LiDAR returns. This paper describes a proposed methodology to obtain a georeferenced canopy map by combining the information obtained with LiDAR with that generated using a GPS receiver installed on top of a tractor. Data regarding the velocity of LiDAR measurements and UTM coordinates of each measured point on the canopy were obtained by applying the proposed transformation process. The process allows overlap of the canopy density map generated with the image of the intended measured area using Google Earth®, providing accurate information about the canopy distribution and/or location of damage along the rows. This methodology was applied and tested on different vine varieties and crop stages in two important vine production areas in Spain. The results indicate that the georeferenced information obtained with LiDAR sensors appears to be an interesting tool with the potential to improve crop management processes. PMID:22163952

  6. Georeferenced LiDAR 3D vine plantation map generation.

    PubMed

    Llorens, Jordi; Gil, Emilio; Llop, Jordi; Queraltó, Meritxell

    2011-01-01

    The use of electronic devices for canopy characterization has recently been widely discussed. Among such devices, LiDAR sensors appear to be the most accurate and precise. Information obtained with LiDAR sensors during reading while driving a tractor along a crop row can be managed and transformed into canopy density maps by evaluating the frequency of LiDAR returns. This paper describes a proposed methodology to obtain a georeferenced canopy map by combining the information obtained with LiDAR with that generated using a GPS receiver installed on top of a tractor. Data regarding the velocity of LiDAR measurements and UTM coordinates of each measured point on the canopy were obtained by applying the proposed transformation process. The process allows overlap of the canopy density map generated with the image of the intended measured area using Google Earth(®), providing accurate information about the canopy distribution and/or location of damage along the rows. This methodology was applied and tested on different vine varieties and crop stages in two important vine production areas in Spain. The results indicate that the georeferenced information obtained with LiDAR sensors appears to be an interesting tool with the potential to improve crop management processes.

  7. 3D-Digital soil property mapping by geoadditive models

    NASA Astrophysics Data System (ADS)

    Papritz, Andreas

    2016-04-01

    In many digital soil mapping (DSM) applications, soil properties must be predicted not only for a single but for multiple soil depth intervals. In the GlobalSoilMap project, as an example, predictions are computed for the 0-5 cm, 5-15 cm, 15-30 cm, 30-60 cm, 60-100 cm, 100-200 cm depth intervals (Arrouays et al., 2014). Legacy soil data are often used for DSM. It is common for such datasets that soil properties were measured for soil horizons or for layers at varying soil depth and with non-constant thickness (support). This poses problems for DSM: One strategy is to harmonize the soil data to common depth prior to the analyses (e.g. Bishop et al., 1999) and conduct the statistical analyses for each depth interval independently. The disadvantage of this approach is that the predictions for different depths are computed independently from each other so that the predicted depth profiles may be unrealistic. Furthermore, the error induced by the harmonization to common depth is ignored in this approach (Orton et al. 2016). A better strategy is therefore to process all soil data jointly without prior harmonization by a 3D-analysis that takes soil depth and geographical position explicitly into account. Usually, the non-constant support of the data is then ignored, but Orton et al. (2016) presented recently a geostatistical approach that accounts for non-constant support of soil data and relies on restricted maximum likelihood estimation (REML) of a linear geostatistical model with a separable, heteroscedastic, zonal anisotropic auto-covariance function and area-to-point kriging (Kyriakidis, 2004.) Although this model is theoretically coherent and elegant, estimating its many parameters by REML and selecting covariates for the spatial mean function is a formidable task. A simpler approach might be to use geoadditive models (Kammann and Wand, 2003; Wand, 2003) for 3D-analyses of soil data. geoAM extend the scope of the linear model with spatially correlated errors to

  8. Disaster Prevention Coastal Map Production by MMS & C3D

    NASA Astrophysics Data System (ADS)

    Hatake, Shuhei; Kohori, Yuki; Watanabe, Yasushi

    2016-06-01

    In March 2011, Eastern Japan suffered serious damage of Tsunami caused by a massive earthquake. In 2012, Ministry of Land, Infrastructure and Transport published "Guideline of setting assumed areas of inundation by Tsunami" to establish the conditions of topography data used for simulation of Tsunami. In this guideline, the elevation data prepared by Geographical Survey Institute of Japan and 2m/5m/10m mesh data of NSDI are adopted for land area, while 500m mesh data of Hydrographic and Oceanographic Department of Japan Coast Guard and sea charts are adopted for water area. These data, however, do not have continuity between land area and water area. Therefore, in order to study the possibility of providing information for coastal disaster prevention, we have developed an efficient method to acquire continuous topography over land and water including tidal zone. Land area data are collected by Mobile Mapping System (MMS) and water area depth data are collected by interferometry echo sounder (C3D), and both data are simultaneously acquired on a same boat. Elaborate point cloud data of 1m or smaller are expected to be used for realistic simulation of Tsunami waves going upstream around shoreline. Tests were made in Tokyo Bay (in 2014) and Osaka Bay (in 2015). The purpose the test in Osaka Bay is to make coastal map for disaster prevention as a countermeasure for predicted Nankai massive earthquake. In addition to Tsunami simulation, the continuous data covering land and marine areas are expected to be used effectively for maintenance and repair of aged port and river facilities, maintenance and investigation of dykes, and ecosystem preservation.

  9. 3D mapping and simulation of Geneva Lake environmental data

    NASA Astrophysics Data System (ADS)

    Villard, Roch; Maignan, Michel; Kanevski, Mikhail; Rapin, Francois; Klein, Audrey

    2010-05-01

    The Geneva Lake is the biggest alpine and subalpine lake in central Europe. The depth of this lake is 309 meters and its total volume of water is 89 billions m3. It takes, on average, around twelve years so that waters of the lake are completely brewed. Furthermore the Geneva lake waters are rich in dissolved substances as carbonate, sulfate. The quantity of particles in suspension in the lake, which mainly arrived from the Rhône, is nowadays around height million of tones. The International Commission for the Leman Lake (CIPEL) works about the improvement of the quality of this lake since 1962. In the present study three dimensional environmental data (temperature, oxygen and nitrate) which cover the period from 1954 to 2008, for a total of 27'500 cases are investigated. We are interested to study the evolution of the temperature of the lake because there is an impact on the reproduction of fishes and also because the winter brewing of the water makes the re-oxygenation of deep-water. In order that biological balance is maintained in a lake, there must be enough oxygen in the water. Moreover, we work on nitrate distribution and evolution because contributions in fertilizers cause eutrophication of lake. The data are very numerous when we consider the time series, some of them with more than 300 occurrences, but there are between 2 and 15 data available for spatial cartography. The basic methodology used for the analysis, mapping and simulations of 3D patterns of environmental data is based on geostatistical predictions (family of kriging models) and conditional stochastic simulations. Spatial and temporal variability, 3D monitoring networks changing over time, make this study challenging. An important problem is also to make interpolation/simulations over a long period of time, like ten years. One way used to overcome this problem, consists in using a weighted average of ten variograms during this period. 3D mapping was carried out using environment data for

  10. 3D Color Digital Elevation Map of AFM Sample

    NASA Technical Reports Server (NTRS)

    2008-01-01

    This color image is a three dimensional (3D) view of a digital elevation map of a sample collected by NASA's Phoenix Mars Lander's Atomic Force Microscope (AFM).

    The image shows four round pits, only 5 microns in depth, that were micromachined into the silicon substrate, which is the background plane shown in red. This image has been processed to reflect the levelness of the substrate.

    A Martian particle only one micrometer, or one millionth of a meter, across is held in the upper left pit.

    The rounded particle shown at the highest magnification ever seen from another world is a particle of the dust that cloaks Mars. Such dust particles color the Martian sky pink, feed storms that regularly envelop the planet and produce Mars' distinctive red soil.

    The particle was part of a sample informally called 'Sorceress' delivered to the AFM on the 38th Martian day, or sol, of the mission (July 2, 2008). The AFM is part of Phoenix's microscopic station called MECA, or the Microscopy, Electrochemistry, and Conductivity Analyzer.

    The AFM was developed by a Swiss-led consortium, with Imperial College London producing the silicon substrate that holds sampled particles.

    The Phoenix Mission is led by the University of Arizona, Tucson, on behalf of NASA. Project management of the mission is by NASA's Jet Propulsion Laboratory, Pasadena, Calif. Spacecraft development is by Lockheed Martin Space Systems, Denver.

  11. 3D mapping of elastic modulus using shear wave optical micro-elastography

    NASA Astrophysics Data System (ADS)

    Zhu, Jiang; Qi, Li; Miao, Yusi; Ma, Teng; Dai, Cuixia; Qu, Yueqiao; He, Youmin; Gao, Yiwei; Zhou, Qifa; Chen, Zhongping

    2016-10-01

    Elastography provides a powerful tool for histopathological identification and clinical diagnosis based on information from tissue stiffness. Benefiting from high resolution, three-dimensional (3D), and noninvasive optical coherence tomography (OCT), optical micro-elastography has the ability to determine elastic properties with a resolution of ~10 μm in a 3D specimen. The shear wave velocity measurement can be used to quantify the elastic modulus. However, in current methods, shear waves are measured near the surface with an interference of surface waves. In this study, we developed acoustic radiation force (ARF) orthogonal excitation optical coherence elastography (ARFOE-OCE) to visualize shear waves in 3D. This method uses acoustic force perpendicular to the OCT beam to excite shear waves in internal specimens and uses Doppler variance method to visualize shear wave propagation in 3D. The measured propagation of shear waves agrees well with the simulation results obtained from finite element analysis (FEA). Orthogonal acoustic excitation allows this method to measure the shear modulus in a deeper specimen which extends the elasticity measurement range beyond the OCT imaging depth. The results show that the ARFOE-OCE system has the ability to noninvasively determine the 3D elastic map.

  12. 3D mapping of elastic modulus using shear wave optical micro-elastography

    PubMed Central

    Zhu, Jiang; Qi, Li; Miao, Yusi; Ma, Teng; Dai, Cuixia; Qu, Yueqiao; He, Youmin; Gao, Yiwei; Zhou, Qifa; Chen, Zhongping

    2016-01-01

    Elastography provides a powerful tool for histopathological identification and clinical diagnosis based on information from tissue stiffness. Benefiting from high resolution, three-dimensional (3D), and noninvasive optical coherence tomography (OCT), optical micro-elastography has the ability to determine elastic properties with a resolution of ~10 μm in a 3D specimen. The shear wave velocity measurement can be used to quantify the elastic modulus. However, in current methods, shear waves are measured near the surface with an interference of surface waves. In this study, we developed acoustic radiation force (ARF) orthogonal excitation optical coherence elastography (ARFOE-OCE) to visualize shear waves in 3D. This method uses acoustic force perpendicular to the OCT beam to excite shear waves in internal specimens and uses Doppler variance method to visualize shear wave propagation in 3D. The measured propagation of shear waves agrees well with the simulation results obtained from finite element analysis (FEA). Orthogonal acoustic excitation allows this method to measure the shear modulus in a deeper specimen which extends the elasticity measurement range beyond the OCT imaging depth. The results show that the ARFOE-OCE system has the ability to noninvasively determine the 3D elastic map. PMID:27762276

  13. Representation of 3-D surface orientation by velocity and disparity gradient cues in area MT.

    PubMed

    Sanada, Takahisa M; Nguyenkim, Jerry D; Deangelis, Gregory C

    2012-04-01

    Neural coding of the three-dimensional (3-D) orientation of planar surface patches may be an important intermediate step in constructing representations of complex 3-D surface structure. Spatial gradients of binocular disparity, image velocity, and texture provide potent cues to the 3-D orientation (tilt and slant) of planar surfaces. Previous studies have described neurons in both dorsal and ventral stream areas that are selective for surface tilt based on one or more of these gradient cues. However, relatively little is known about whether single neurons provide consistent information about surface orientation from multiple gradient cues. Moreover, it is unclear how neural responses to combinations of surface orientation cues are related to responses to the individual cues. We measured responses of middle temporal (MT) neurons to random dot stimuli that simulated planar surfaces at a variety of tilts and slants. Four cue conditions were tested: disparity, velocity, and texture gradients alone, as well as all three gradient cues combined. Many neurons showed robust tuning for surface tilt based on disparity and velocity gradients, with relatively little selectivity for texture gradients. Some neurons showed consistent tilt preferences for disparity and velocity cues, whereas others showed large discrepancies. Responses to the combined stimulus were generally well described as a weighted linear sum of responses to the individual cues, even when disparity and velocity preferences were discrepant. These findings suggest that area MT contains a rudimentary representation of 3-D surface orientation based on multiple cues, with single neurons implementing a simple cue integration rule.

  14. 3D P-Wave Velocity Structure of the Deep Galicia Rifted Margin

    NASA Astrophysics Data System (ADS)

    Bayrakci, Gaye; Minshull, Timothy; Davy, Richard; Sawyer, Dale; Klaeschen, Dirk; Papenberg, Cord; Reston, Timothy; Shillington, Donna; Ranero, Cesar

    2015-04-01

    The combined wide-angle reflection-refraction and multi-channel seismic (MCS) experiment, Galicia 3D, was carried out in 2013 at the Galicia rifted margin in the northeast Atlantic Ocean, west of Spain. The main geological features within the 64 by 20 km (1280 km²) 3D box investigated by the survey are the peridotite ridge (PR), the fault bounded, rotated basement blocks and the S reflector, which has been interpreted to be a low angle detachment fault. 44 short period four-component ocean bottom seismometers and 28 ocean bottom hydrophones were deployed in the 3D box. 3D MCS profiles sampling the whole box were acquired with two airgun arrays of 3300 cu.in. fired alternately every 37.5 m. We present the results from 3D first-arrival time tomography that constrains the P-wave velocity in the 3D box, for the entire depth sampled by reflection data. Results are validated by synthetic tests and by the comparison with Galicia 3D MCS lines. The main outcomes are as follows: 1- The 3.5 km/s iso-velocity contour mimics the top of the acoustic basement observed on MCS profiles. Block bounding faults are imaged as velocity contrasts and basement blocks exhibit 3D topographic variations. 2- On the southern profiles, the top of the PR rises up to 5.5 km depth whereas, 20 km northward, its basement expression (at 6.5 km depth) nearly disappears. 3- The 6.5 km/s iso-velocity contour matches the topography of the S reflector where the latter is visible on MCS profiles. Within a depth interval of 0.6 km (in average), velocities beneath the S reflector increase from 6.5 km/s to 7 km/s, which would correspond to a decrease in the degree of serpentinization from ~45 % to ~30 % if these velocity variations are caused solely by variations in hydration. At the intersections between the block bounding normal faults and the S reflector, this decrease happens over a larger depth interval (> 1 km), suggesting that faults act as conduit for the water flow in the upper mantle.

  15. 3D P-Wave Velocity Structure of the Deep Galicia Rifted Margin

    NASA Astrophysics Data System (ADS)

    Bayrakci, G.; Minshull, T. A.; Davy, R. G.; Sawyer, D. S.; Klaeschen, D.; Papenberg, C. A.; Reston, T. J.; Shillington, D. J.; Ranero, C. R.

    2014-12-01

    The combined wide-angle reflection-refraction and multi-channel seismic (MCS) experiment, Galicia 3D, was carried out in 2013 at the Galicia rifted margin in the northeast Atlantic Ocean, west of Spain. The main geological features within the 64 by 20 km (1280 km²) 3D box investigated by the survey are the peridotite ridge (PR), the fault bounded, rotated basement blocks and the S reflector, which has been interpreted to be a low angle detachment fault. 44 short period four-component ocean bottom seismometers and 28 ocean bottom hydrophones were deployed in the 3D box. 3D MCS profiles sampling the whole box were acquired with two airgun arrays of 3300 cu.in. fired alternately every 37.5 m. We present the results from 3D first-arrival time tomography that constrains the P-wave velocity in the 3D box, for the entire depth sampled by reflection data. Results are validated by synthetic tests and by the comparison with Galicia 3D MCS lines. The main outcomes are as follows: 1- The 3.5 km/s iso-velocity contour mimics the top of the acoustic basement observed on MCS profiles. Block bounding faults are imaged as velocity contrasts and basement blocks exhibit 3D topographic variations. 2- On the southern profiles, the top of the PR rises up to 5.5 km depth whereas, 20 km northward, its basement expression (at 6.5 km depth) nearly disappears. 3- The 6.5 km/s iso-velocity contour matches the topography of the S reflector where the latter is visible on MCS profiles. Within a depth interval of 0.6 km (in average), velocities beneath the S reflector increase from 6.5 km/s to 7 km/s, which would correspond to a decrease in the degree of serpentinization from ~45 % to ~30 % if these velocity variations are caused solely by variations in hydration. At the intersections between the block bounding normal faults and the S reflector, this decrease happens over a larger depth interval (> 1 km), suggesting that faults act as conduit for the water flow in the upper mantle.

  16. 3-D Mapping of the Galactic Nuclear Region

    NASA Astrophysics Data System (ADS)

    Wang, Q. Daniel

    The Galactic center of our Galaxy provides an excellent laboratory to study the star formation mode and history as well as the structure and dynamics of stars and gas under an extreme galactic nuclear environment. We propose a comprehensive data analysis program to investigate the 3-D properties of the region enclosed by the Central Molecular Zone of the Galaxy. We will capitalize on an extensive data set now available from Planck, Herschel, Spitzer, and Hubble Space Telescopes, as well as the Large Millimeter Telescope and other ground-based facilities. This data set provides sensitive high-resolution probes of the region over the millimeter to nearIR wavelength range. The data set, together with dedicated state-of-art analysis tools that we have been developing, will enable us to obtain (1) the first full-spacing millimeter dust emission image of the region at a resolution better than 10 arcseconds (FWHM), (2) the column density, temperature, and opacity spectral index distributions of dusty gas; (3) the mapping of dust extinction toward individual stars; (4) the line-of-sight locations of individual dense clouds, (5) the global spatial distribution and formation history of stars, and (6) the characterization of environment effects on stellar and gas dynamics in the region. The combined analysis of the dust emission and extinction will represent a major step forward in determining the properties of the dusty gas as well as its effect on the stellar light observations of the region. This body of work will likely have strong implications for our understanding the stellar and gas properties in other galactic nuclei and their role in regulating the evolution of galaxies as whole.

  17. Effect of postural changes on 3D joint angular velocity during starting block phase.

    PubMed

    Slawinski, Jean; Dumas, Raphaël; Cheze, Laurence; Ontanon, Guy; Miller, Christian; Mazure-Bonnefoy, Alice

    2013-01-01

    Few studies have focused on the effect of posture during sprint start. The aim of this study was to measure the effect of the modification of horizontal distance between the blocks during sprint start on three dimensional (3D) joint angular velocity. Nine trained sprinters started using three different starting positions (bunched, medium and elongated). They were equipped with 63 passive reflective markers, and an opto-electronic Motion Analysis system was used to collect the 3D marker trajectories. During the pushing phase on the blocks, norm of the joint angular velocity (NJAV), 3D Euler angular velocity (EAV) and pushing time on the blocks were calculated. The results demonstrated that the decrease of the block spacing induces an opposite effect on the angular velocity of joints of the lower and the upper limbs. The NJAV of the upper limbs is greater in the bunched start, whereas the NJAV of the lower limbs is smaller. The modifications of NJAV were due to a combination of the movement of the joints in the different degrees of freedom. The medium start seems to be the best compromise because it leads, in a short pushing time, to a combination of optimal joint velocities for upper and lower segments.

  18. Separate Perceptual and Neural Processing of Velocity- and Disparity-Based 3D Motion Signals.

    PubMed

    Joo, Sung Jun; Czuba, Thaddeus B; Cormack, Lawrence K; Huk, Alexander C

    2016-10-19

    Although the visual system uses both velocity- and disparity-based binocular information for computing 3D motion, it is unknown whether (and how) these two signals interact. We found that these two binocular signals are processed distinctly at the levels of both cortical activity in human MT and perception. In human MT, adaptation to both velocity-based and disparity-based 3D motions demonstrated direction-selective neuroimaging responses. However, when adaptation to one cue was probed using the other cue, there was no evidence of interaction between them (i.e., there was no "cross-cue" adaptation). Analogous psychophysical measurements yielded correspondingly weak cross-cue motion aftereffects (MAEs) in the face of very strong within-cue adaptation. In a direct test of perceptual independence, adapting to opposite 3D directions generated by different binocular cues resulted in simultaneous, superimposed, opposite-direction MAEs. These findings suggest that velocity- and disparity-based 3D motion signals may both flow through area MT but constitute distinct signals and pathways.

  19. The terminal velocity of volcanic particles with shape obtained from 3D X-ray microtomography

    NASA Astrophysics Data System (ADS)

    Dioguardi, Fabio; Mele, Daniela; Dellino, Pierfrancesco; Dürig, Tobias

    2017-01-01

    New experiments of falling volcanic particles were performed in order to define terminal velocity models applicable in a wide range of Reynolds number Re. Experiments were carried out with fluids of various viscosities and with particles that cover a wide range of size, density and shape. Particle shape, which strongly influences fluid drag, was measured in 3D by High-resolution X-ray microtomography, by which sphericity Φ3D and fractal dimension D3D were obtained. They are easier to measure and less operator dependent than the 2D shape parameters used in previous papers. Drag laws that make use of the new 3D parameters were obtained by fitting particle data to the experiments, and single-equation terminal velocity models were derived. They work well both at high and low Re (3 × 10- 2 < Re < 104), while earlier formulations made use of different equations at different ranges of Re. The new drag laws are well suited for the modelling of particle transportation both in the eruptive column, where coarse and fine particles are present, and also in the distal part of the umbrella region, where fine ash is involved in the large-scale domains of atmospheric circulation. A table of the typical values of Φ3D and D3D of particles from known plinian, subplinian and ash plume eruptions is presented. Graphs of terminal velocity as a function of grain size are finally proposed as tools to help volcanologists and atmosphere scientists to model particle transportation of explosive eruptions.

  20. 3-D Velocity Model of the Coachella Valley, Southern California Based on Explosive Shots from the Salton Seismic Imaging Project

    NASA Astrophysics Data System (ADS)

    Persaud, P.; Stock, J. M.; Fuis, G. S.; Hole, J. A.; Goldman, M.; Scheirer, D. S.

    2014-12-01

    We have analyzed explosive shot data from the 2011 Salton Seismic Imaging Project (SSIP) across a 2-D seismic array and 5 profiles in the Coachella Valley to produce a 3-D P-wave velocity model that will be used in calculations of strong ground shaking. Accurate maps of seismicity and active faults rely both on detailed geological field mapping and a suitable velocity model to accurately locate earthquakes. Adjoint tomography of an older version of the SCEC 3-D velocity model shows that crustal heterogeneities strongly influence seismic wave propagation from moderate earthquakes (Tape et al., 2010). These authors improve the crustal model and subsequently simulate the details of ground motion at periods of 2 s and longer for hundreds of ray paths. Even with improvements such as the above, the current SCEC velocity model for the Salton Trough does not provide a match of the timing or waveforms of the horizontal S-wave motions, which Wei et al. (2013) interpret as caused by inaccuracies in the shallow velocity structure. They effectively demonstrate that the inclusion of shallow basin structure improves the fit in both travel times and waveforms. Our velocity model benefits from the inclusion of known location and times of a subset of 126 shots detonated over a 3-week period during the SSIP. This results in an improved velocity model particularly in the shallow crust. In addition, one of the main challenges in developing 3-D velocity models is an uneven stations-source distribution. To better overcome this challenge, we also include the first arrival times of the SSIP shots at the more widely spaced Southern California Seismic Network (SCSN) in our inversion, since the layout of the SSIP is complementary to the SCSN. References: Tape, C., et al., 2010, Seismic tomography of the Southern California crust based on spectral-element and adjoint methods: Geophysical Journal International, v. 180, no. 1, p. 433-462. Wei, S., et al., 2013, Complementary slip distributions

  1. Modeling and validation of a 3D velocity structure for the Santa Clara Valley, California, for seismic-wave simulations

    USGS Publications Warehouse

    Hartzell, S.; Harmsen, S.; Williams, R.A.; Carver, D.; Frankel, A.; Choy, G.; Liu, P.-C.; Jachens, R.C.; Brocher, T.M.; Wentworth, C.M.

    2006-01-01

    A 3D seismic velocity and attenuation model is developed for Santa Clara Valley, California, and its surrounding uplands to predict ground motions from scenario earthquakes. The model is developed using a variety of geologic and geophysical data. Our starting point is a 3D geologic model developed primarily from geologic mapping and gravity and magnetic surveys. An initial velocity model is constructed by using seismic velocities from boreholes, reflection/refraction lines, and spatial autocorrelation microtremor surveys. This model is further refined and the seismic attenuation is estimated through waveform modeling of weak motions from small local events and strong-ground motion from the 1989 Loma Prieta earthquake. Waveforms are calculated to an upper frequency of 1 Hz using a parallelized finite-difference code that utilizes two regions with a factor of 3 difference in grid spacing to reduce memory requirements. Cenozoic basins trap and strongly amplify ground motions. This effect is particularly strong in the Evergreen Basin on the northeastern side of the Santa Clara Valley, where the steeply dipping Silver Creek fault forms the southwestern boundary of the basin. In comparison, the Cupertino Basin on the southwestern side of the valley has a more moderate response, which is attributed to a greater age and velocity of the Cenozoic fill. Surface waves play a major role in the ground motion of sedimentary basins, and they are seen to strongly develop along the western margins of the Santa Clara Valley for our simulation of the Loma Prieta earthquake.

  2. Sector mapping method for 3D detached retina visualization.

    PubMed

    Zhai, Yi-Ran; Zhao, Yong; Zhong, Jie; Li, Ke; Lu, Cui-Xin; Zhang, Bing

    2016-10-01

    A new sphere-mapping algorithm called sector mapping is introduced to map sector images to the sphere of an eyeball. The proposed sector-mapping algorithm is evaluated and compared with the plane-mapping algorithm adopted in previous work. A simulation that maps an image of concentric circles to the sphere of the eyeball and an analysis of the difference in distance between neighboring points in a plane and sector were used to compare the two mapping algorithms. A three-dimensional model of a whole retina with clear retinal detachment was generated using the Visualization Toolkit software. A comparison of the mapping results shows that the central part of the retina near the optic disc is stretched and its edges are compressed when the plane-mapping algorithm is used. A better mapping result is obtained by the sector-mapping algorithm than by the plane-mapping algorithm in both the simulation results and real clinical retinal detachment three-dimensional reconstruction.

  3. Stratified shear flow in an inclined duct: near-instantaneous 3D velocity and density measurements

    NASA Astrophysics Data System (ADS)

    Partridge, Jamie; Lefauve, Adrien; Dalziel, Stuart; Linden, Paul

    2016-11-01

    We present results from a new experimental setup to study the exchange flow in an inclined square duct between two reservoirs containing fluids of different densities. This system can exhibit stratified shear wave motions, and has a distinct parameter threshold above which turbulence is triggered and progressively fills a larger fraction of the duct. To probe these intrinsically 3D flows, we introduce a new setup in which a traversing laser sheet allows us to obtain near-instantaneous 3D velocity and density fields. Three components of velocity are measured on successive 2D planes using stereo particle image velocimetry (PIV) with density information obtained simultaneously using laser induced fluorescence (LIF). Supported by EPSRC Programme Grant EP/K034529/1 entitled "Mathematical Underpinnings of Stratified Turbulence".

  4. A 3D radiative transfer framework . VII. Arbitrary velocity fields in the Eulerian frame

    NASA Astrophysics Data System (ADS)

    Seelmann, A. M.; Hauschildt, P. H.; Baron, E.

    2010-11-01

    Aims: A solution of the radiative-transfer problem in 3D with arbitrary velocity fields in the Eulerian frame is presented. The method is implemented in our 3D radiative transfer framework and used in the PHOENIX/3D code. It is tested by comparison to our well-tested 1D co-moving frame radiative transfer code, where the treatment of a monotonic velocity field is implemented in the Lagrangian frame. The Eulerian formulation does not need much additional memory and is useable on state-of-the-art computers, even large-scale applications with 1000's of wavelength points are feasible. Methods: In the Eulerian formulation of the problem, the photon is seen by the atom at a Doppler-shifted wavelength depending on its propagation direction, which leads to a Doppler-shifted absorption and emission. This leads to a different source function and a different Λ^* operator in the radiative transfer equations compared to the static case. Results: The results of the Eulerian 3D spherical calculations are compared to our well-tested 1D Lagrangian spherical calculations, the agreement is, up to vmax = 1 × 103 km s-1 very good. Test calculation in other geometries are also shown.

  5. Locating earthquakes in west Texas oil fields using 3-D anisotropic velocity models

    SciTech Connect

    Hua, Fa; Doser, D.; Baker, M. . Dept. of Geological Sciences)

    1993-02-01

    Earthquakes within the War-Wink gas field, Ward County, Texas, that have been located with a 1-D velocity model occur near the edges and top of a naturally occurring overpressured zone. Because the War-Wink field is a structurally controlled anticline with significant velocity anisotropy associated with the overpressured zone and finely layered evaporites, the authors have attempted to re-locate earthquakes using a 3-D anisotropic velocity model. Preliminary results with this model give the unsatisfactory result that many earthquakes previously located at the top of the overpressured zone (3-3.5 km) moved into the evaporites (1-1.5 km) above the field. They believe that this result could be caused by: (1) aliasing the velocity model; or (2) problems in determining the correct location minima when several minima exist. They are currently attempting to determine which of these causes is more likely for the unsatisfactory result observed.

  6. UCVM: An Open Source Framework for 3D Velocity Model Research

    NASA Astrophysics Data System (ADS)

    Gill, D.; Maechling, P. J.; Jordan, T. H.; Plesch, A.; Taborda, R.; Callaghan, S.; Small, P.

    2013-12-01

    Three-dimensional (3D) seismic velocity models provide fundamental input data to ground motion simulations, in the form of structured or unstructured meshes or grids. Numerous models are available for California, as well as for other parts of the United States and Europe, but models do not share a common interface. Being able to interact with these models in a standardized way is critical in order to configure and run 3D ground motion simulations. The Unified Community Velocity Model (UCVM) software, developed by researchers at the Southern California Earthquake Center (SCEC), is an open source framework designed to provide a cohesive way to interact with seismic velocity models. We describe the several ways in which we have improved the UCVM software over the last year. We have simplified the UCVM installation process by automating the installation of various community codebases, improving the ease of use.. We discuss how UCVM software was used to build velocity meshes for high-frequency (4Hz) deterministic 3D wave propagation simulations, and how the UCVM framework interacts with other open source resources, such as NetCDF file formats for visualization. The UCVM software uses a layered software architecture that transparently converts geographic coordinates to the coordinate systems used by the underlying velocity models and supports inclusion of a configurable near-surface geotechnical layer, while interacting with the velocity model codes through their existing software interfaces. No changes to the velocity model codes are required. Our recent UCVM installation improvements bundle UCVM with a setup script, written in Python, which guides users through the process that installs the UCVM software along with all the user-selectable velocity models. Each velocity model is converted into a standardized (configure, make, make install) format that is easily downloaded and installed via the script. UCVM is often run in specialized high performance computing (HPC

  7. 3D P-wave Velocity Structure Beneath the Eastern Canadian Shield and Northern Appalachian Region

    NASA Astrophysics Data System (ADS)

    Villemaire, M.; Darbyshire, F. A.; Bastow, I. D.

    2010-12-01

    Previous seismic studies of the upper mantle of the Canadian Shield have indicated some low-velocity anomalies within the cratonic lithosphere in the Abitibi-Grenville region. The lack of seismograph station coverage to the east and south-east of the studied area prevented definition of the 3D geometry of these anomalies. Adding new stations from the province of Quebec and from the northeastern United States allows us to carry out new studies of the P-wave velocity structure of the upper mantle, in order to better understand the complexity of the region and the interaction of the lithosphere with possible thermal anomalies in the underlying mantle. We analysed teleseismic P wave arrivals from almost 200 earthquakes, recorded at 45 stations deployed across the provinces of Quebec and Ontario and across the northeastern US. The relative arrival times of teleseismic P waves across the array were measured using the cross-correlation method of VanDecar & Crosson (1990). The travel time data were then inverted to estimate the 3D P-wave velocity structure beneath the region, using the least-squares tomographic inversion code of VanDecar (1991). The model shows some interesting features. We see a diffuse low-velocity structure beneath New-England that extends to at least 500 km depth, and that may be related to the Appalachian Mountain belt. There is also a linear low-velocity structure, flanked by higher velocities, perpendicular to the Grenville Front, and along the Ottawa Valley. We interpret this feature as a mantle signature of the Great Meteor Hotspot track. We have looked for systematic differences between the mantle underlying the Archean Superior craton and the Proterozoic Grenville Province but did not find a significant difference in the upper mantle. We investigate the role of thermal and compositional effects to interpret the velocity models and to relate the patterns of the anomalies to past and present tectonic structures.

  8. Clutter in the GMTI range-velocity map.

    SciTech Connect

    Doerry, Armin Walter

    2009-04-01

    Ground Moving Target Indicator (GMTI) radar maps echo data to range and range-rate, which is a function of a moving target's velocity and its position within the antenna beam footprint. Even stationary clutter will exhibit an apparent motion spectrum and can interfere with moving vehicle detections. Consequently it is very important for a radar to understand how stationary clutter maps into radar measurements of range and velocity. This mapping depends on a wide variety of factors, including details of the radar motion, orientation, and the 3-D topography of the clutter.

  9. Ultrasonic 3-D Vector Flow Method for Quantitative In Vivo Peak Velocity and Flow Rate Estimation.

    PubMed

    Holbek, Simon; Ewertsen, Caroline; Bouzari, Hamed; Pihl, Michael Johannes; Hansen, Kristoffer Lindskov; Stuart, Matthias Bo; Thomsen, Carsten; Nielsen, Michael Bachmann; Jensen, Jorgen Arendt

    2017-03-01

    Current clinical ultrasound (US) systems are limited to show blood flow movement in either 1-D or 2-D. In this paper, a method for estimating 3-D vector velocities in a plane using the transverse oscillation method, a 32×32 element matrix array, and the experimental US scanner SARUS is presented. The aim of this paper is to estimate precise flow rates and peak velocities derived from 3-D vector flow estimates. The emission sequence provides 3-D vector flow estimates at up to 1.145 frames/s in a plane, and was used to estimate 3-D vector flow in a cross-sectional image plane. The method is validated in two phantom studies, where flow rates are measured in a flow-rig, providing a constant parabolic flow, and in a straight-vessel phantom ( ∅=8 mm) connected to a flow pump capable of generating time varying waveforms. Flow rates are estimated to be 82.1 ± 2.8 L/min in the flow-rig compared with the expected 79.8 L/min, and to 2.68 ± 0.04 mL/stroke in the pulsating environment compared with the expected 2.57 ± 0.08 mL/stroke. Flow rates estimated in the common carotid artery of a healthy volunteer are compared with magnetic resonance imaging (MRI) measured flow rates using a 1-D through-plane velocity sequence. Mean flow rates were 333 ± 31 mL/min for the presented method and 346 ± 2 mL/min for the MRI measurements.

  10. Refining the 3D seismic velocity and attenuation models for Katmai National Park, Alaska

    NASA Astrophysics Data System (ADS)

    Murphy, R. A.; Thurber, C. H.; Prejean, S. G.

    2009-12-01

    We invert data from approximately 4,000 local earthquakes occurring between September 2004 and August 2009 to determine the 3D P-wave velocity and P-wave attenuation structures in the Katmai volcanic region. Arrival information and waveforms for the study come from the Alaska Volcano Observatory’s permanent network of 20 seismometers in the area, which are predominantly single-component, short period instruments. The absolute and relative arrival times are used in a double-difference seismic tomography inversion to solve for an improved velocity model for the main volcanic centers. We use the resulting 3D velocity model to relocate all catalog earthquakes in Katmai between January 1996 and August 2009. Inversions for the quality factor Q are completed using a spectral decay approach to determine source parameters, t*, and site response with a nonlinear inversion. Using the final 3D velocity model to define the ray paths, t* values are then inverted to determine frequency-independent Q models. The final models developed through these inversions reveal a low velocity and low Q zone from the surface to ~7 km depth centered on the volcanic axis and extending ~25 km between Martin and Katmai volcanoes. The relocated hypocenters provide insight into the geometry of seismogenic structures in the area, revealing clustering of events into four distinct zones associated with Martin, Mageik, Trident, and Katmai. While the Martin, Mageik, and Katmai clusters are all at 3-4 km depth, the Trident cluster is slightly deeper at 4-6 km. Many new features are apparent within these clusters, including a strand of earthquakes trending NE-SW between the main Martin and Mageik clusters. Smaller linear features are also visible in the Katmai cluster along with a small migrating swarm which occurred NW of the Katmai caldera during mid-2006. Data from an array of 11 three-component broadband instruments currently deployed in the area between Mageik volcano and Katmai caldera will be

  11. Comparative velocity structure of active Hawaiian volcanoes from 3-D onshore-offshore seismic tomography

    USGS Publications Warehouse

    Park, J.; Morgan, J.K.; Zelt, C.A.; Okubo, P.G.; Peters, L.; Benesh, N.

    2007-01-01

    We present a 3-D P-wave velocity model of the combined subaerial and submarine portions of the southeastern part of the Island of Hawaii, based on first-arrival seismic tomography of marine airgun shots recorded by the onland seismic network. Our model shows that high-velocity materials (6.5-7.0??km/s) lie beneath Kilauea's summit, Koae fault zone, and the upper Southwest Rift Zone (SWRZ) and upper and middle East Rift Zone (ERZ), indicative of magma cumulates within the volcanic edifice. A separate high-velocity body of 6.5-6.9??km/s within Kilauea's lower ERZ and upper Puna Ridge suggests a distinct body of magma cumulates, possibly connected to the summit magma cumulates at depth. The two cumulate bodies within Kilauea's ERZ may have undergone separate ductile flow seaward, influencing the submarine morphology of Kilauea's south flank. Low velocities (5.0-6.3??km/s) seaward of Kilauea's Hilina fault zone, and along Mauna Loa's seaward facing Kao'iki fault zone, are attributed to thick piles of volcaniclastic sediments deposited on the submarine flanks. Loihi seamount shows high-velocity anomalies beneath the summit and along the rift zones, similar to the interpreted magma cumulates below Mauna Loa and Kilauea volcanoes, and a low-velocity anomaly beneath the oceanic crust, probably indicative of melt within the upper mantle. Around Kilauea's submarine flank, a high-velocity anomaly beneath the outer bench suggests the presence of an ancient seamount that may obstruct outward spreading of the flank. Mauna Loa's southeast flank is also marked by a large, anomalously high-velocity feature (7.0-7.4??km/s), interpreted to define an inactive, buried volcanic rift zone, which might provide a new explanation for the westward migration of Mauna Loa's current SWRZ and the growth of Kilauea's SWRZ. ?? 2007 Elsevier B.V. All rights reserved.

  12. Model-based correction of velocity measurements in navigated 3-D ultrasound imaging during neurosurgical interventions.

    PubMed

    Iversen, Daniel Hoyer; Lindseth, Frank; Unsgaard, Geirmund; Torp, Hans; Lovstakken, Lasse

    2013-09-01

    In neurosurgery, information of blood flow is important to identify and avoid damage to important vessels. Three-dimensional intraoperative ultrasound color-Doppler imaging has proven useful in this respect. However, due to Doppler angle-dependencies and the complexity of the vascular architecture, clinical valuable 3-D information of flow direction and velocity is currently not available. In this work, we aim to correct for angle-dependencies in 3-D flow images based on a geometric model of the neurovascular tree generated on-the-fly from free-hand 2-D imaging and an accurate position sensor system. The 3-D vessel model acts as a priori information of vessel orientation used to angle-correct the Doppler measurements, as well as provide an estimate of the average flow direction. Based on the flow direction we were also able to do aliasing correction to approximately double the measurable velocity range. In vitro experiments revealed a high accuracy and robustness for estimating the mean direction of flow. Accurate angle-correction of axial velocities were possible given a sufficient beam-to-flow angle for at least parts of a vessel segment . In vitro experiments showed an absolute relative bias of 9.5% for a challenging low-flow scenario. The method also showed promising results in vivo, improving the depiction of flow in the distal branches of intracranial aneurysms and the feeding arteries of an arteriovenous malformation. Careful inspection by an experienced surgeon confirmed the correct flow direction for all in vivo examples.

  13. New algorithms to map asymmetries of 3D surfaces.

    PubMed

    Combès, Benoît; Prima, Sylvain

    2008-01-01

    In this paper, we propose a set of new generic automated processing tools to characterise the local asymmetries of anatomical structures (represented by surfaces) at an individual level, and within/between populations. The building bricks of this toolbox are: (1) a new algorithm for robust, accurate, and fast estimation of the symmetry plane of grossly symmetrical surfaces, and (2) a new algorithm for the fast, dense, nonlinear matching of surfaces. This last algorithm is used both to compute dense individual asymmetry maps on surfaces, and to register these maps to a common template for population studies. We show these two algorithms to be mathematically well-grounded, and provide some validation experiments. Then we propose a pipeline for the statistical evaluation of local asymmetries within and between populations. Finally we present some results on real data.

  14. Simultaneous measurement of 3D zooplankton trajectories and surrounding fluid velocity field in complex flows.

    PubMed

    Adhikari, Deepak; Gemmell, Brad J; Hallberg, Michael P; Longmire, Ellen K; Buskey, Edward J

    2015-11-01

    We describe an automated, volumetric particle image velocimetry (PIV) and tracking method that measures time-resolved, 3D zooplankton trajectories and surrounding volumetric fluid velocity fields simultaneously and non-intrusively. The method is demonstrated for groups of copepods flowing past a wall-mounted cylinder. We show that copepods execute escape responses when subjected to a strain rate threshold upstream of a cylinder, but the same threshold range elicits no escape responses in the turbulent wake downstream. The method was also used to document the instantaneous slip velocity of zooplankton and the resulting differences in trajectory between zooplankton and non-inertial fluid particles in the unsteady wake flow, showing the method's capability to quantify drift for both passive and motile organisms in turbulent environments. Applications of the method extend to any group of organisms interacting with the surrounding fluid environment, where organism location, larger-scale eddies and smaller-scale fluid deformation rates can all be tracked and analyzed.

  15. A 3-D crustal velocity structure across the Variscides of southwest Ireland

    NASA Astrophysics Data System (ADS)

    Landes, M.; Readman, P. W.; O'Reilly, B. M.; Shannon, P. M.

    2003-04-01

    In the VARNET-96 experiment three seismic refraction profiles were acquired to examine the crustal structure in the south-west of Ireland. The shotpoint geometry allowed for both in-line and off-line fan shot recordings on the three profiles. Results of 3-D inversion modelling illustrate that there is pervasive lateral heterogeneity of the sedimentary and crustal velocity structure south of the Shannon Estuary. Palaeozoic strata at the south coast are about 5-6 km thick associated with the sedimentary infill of the Munster and South Munster Basins. To the north, shallow upper crust in the vicinity of the Killarney-Mallow Fault Zone is followed by a 3-4 km thick sedimentary succession in the Dingle-Shannon Basin. A zone of high-velocity upper crust (6.4-6.6 km/s) beneath the South Munster Basin correlates with a gravity high between the Kenmare-Killarney and the Leinster Granite gravity lows. Other high-velocity zones beneath Dingle Bay and the Kenmare River region may be associated with the deep traces of the Killarney-Mallow Fault Zone and the Cork-Kenmare Line. The 3-D velocity model was taken as a basis for the computation of PmP reflected arrivals from the crust-mantle boundary. The Moho depth varies from 28-29 km at the south coast to 32-33 km beneath the Dingle-Shannon Basin. Pervasive Variscan deformation appears to be confined to the sedimentary and upper crustal structure thus supporting a thin-skinned tectonic model for Variscan deformation. Deep-crustal variations only occur where they can be correlated with major tectonic features such as the Caledonian Iapetus Suture near the Shannon Estuary. The shallowing of the Moho towards the coast may result from Mesozoic crustal extension in the adjacent offshore sedimentary basins.

  16. GIA-Induced 3-D Crustal Velocities Predicted Using a New Generation of Viscoelastic Earth Models

    NASA Astrophysics Data System (ADS)

    Mitrovica, J. X.; Latychev, K.; Tamisiea, M. E.; Tromp, J.; Milne, G. A.

    2004-05-01

    In recent work we have described a new finite-volume, time-domain numerical scheme for predicting the response of a complex (Maxwell) viscoelastic Earth model to arbitrary surface mass loads. The method permits the incorporation of 3-D variations in mantle viscoelastic structure including, for example, heterogeneities in elastic plate strength and mantle viscosity. To address these complexities numerically, we have developed our code for a distributed (parallel) computer environment such as a Beowulf PC cluster. In this talk we apply the numerical formulation to compute a suite of predictions of present-day 3-D crustal deformation rates driven by the glacial isostatic adjustment process (GIA). These predictions are generated using an input global ice model and an ocean load computed using a solution to the governing `sea-level equation'. The latter is obtained in a numerical calculation that utilizes the same space-time discretization as in the main solver. Our goal is to assess the sensitivity of previous predictions of GIA-induced 3-D crustal rates based on spherically symmetric Earth models to the introduction of: (1) elastic plate thickness variations within oceanic regions and across the ocean-continent interface; and (2) variations in mantle viscosity inferred, indirectly, from a tomographic model of seismic velocity heterogeneity.

  17. Face recognition using 3D facial shape and color map information: comparison and combination

    NASA Astrophysics Data System (ADS)

    Godil, Afzal; Ressler, Sandy; Grother, Patrick

    2004-08-01

    In this paper, we investigate the use of 3D surface geometry for face recognition and compare it to one based on color map information. The 3D surface and color map data are from the CAESAR anthropometric database. We find that the recognition performance is not very different between 3D surface and color map information using a principal component analysis algorithm. We also discuss the different techniques for the combination of the 3D surface and color map information for multi-modal recognition by using different fusion approaches and show that there is significant improvement in results. The effectiveness of various techniques is compared and evaluated on a dataset with 200 subjects in two different positions.

  18. Identifying the third dimension in 2D fluoroscopy to create 3D cardiac maps.

    PubMed

    Sra, Jasbir; Krum, David; Choudhuri, Indrajit; Belanger, Barry; Palma, Mark; Brodnick, Donald; Rowe, Daniel B

    2016-12-22

    Three-dimensional cardiac mapping is important for optimal visualization of the heart during cardiac ablation for the treatment of certain arrhythmias. However, many hospitals and clinics worldwide cannot afford the high cost of the current mapping systems. We set out to determine if, using predefined algorithms, comparable 3D cardiac maps could be created by a new device that relies on data generated from single-plane fluoroscopy and patient recording and monitoring systems, without the need for costly equipment, infrastructure changes, or specialized catheters. The study included phantom and animal experiments to compare the prototype test device, Navik 3D, with the existing CARTO 3 System. The primary endpoint directly compared: (a) the 3D distance between the Navik 3D-simulated ablation location and the back-projected ground truth location of the pacing and mapping catheter electrode, and (b) the same distance for CARTO. The study's primary objective was considered met if the 95% confidence lower limit was greater than 0.75% for the Navik 3D-CARTO difference between the 2 distances, or less than or equal to 2 mm. Study results showed that the Navik 3D performance was equivalent to the CARTO system, and that accurate 3D cardiac maps can be created using data from equipment that already exists in all electrophysiology labs.

  19. Lithologic identification & mapping test based on 3D inversion of magnetic and gravity

    NASA Astrophysics Data System (ADS)

    Yan, Jiayong; Lv, Qingtian; Qi, Guang; Zhao, Jinhua; Zhang, Yongqian

    2016-04-01

    Though lithologic identification & mapping to achieve ore concentration district transparent within 5km depth is the main way to realize deep fine structures study, to explore deep mineral resources and to reveal metallogenic regularity of large-scale ore district . Owing to the wide covered area, high sampling density and mature three-dimensional inversion algorithm of gravity and magnetic data, so gravity and magnetic inversion become the most likely way to achieve three-dimensional lithologic mapping at the present stage. In this paper, we take Lu-zong(Lujiang county to Zongyang county in Anhui province ,east China) ore district as a case, we proposed lithologic mapping flow based 3D inversion of gravity magnetic and then carry out the lithologic mapping test. Lithologic identification & mapping flow is as follows: 1. Analysis relations between lithology and density and magnetic susceptibility by cross plot. 2.Extracting appropriate residual anomalies from high-precision Bourger gravity and aeromagnetic. 3.Use same mesh, do 3D magnetic and gravity inversion respectively under prior information constrained, and then invert susceptibility and density 3D model. 4. According setp1, construct logical topology operations between density 3D model and susceptibility. 5.Use the logical operations, identify lithogies cell by cell in 3D mesh, and then get 3D lithological model. According this flow, we obtained three-dimensional distribution of five main type lithologies in the Lu-Zong ore district within 5km depth. The result of lithologic mapping not only showed that the shallow characteristics and surface geological mapping are basically Coincide,more importantly ,it reveals the deeper lithologic changes.The lithlogical model make up the insufficient of surface geological mapping. The lithologic mapping test results in Lu-Zong ore concentration district showed that lithological mapping using 3D inversion of gravity and magnetic is a effective method to reveal the

  20. Imaging of 3-D seismic velocity structure of Southern Sumatra region using double difference tomographic method

    NASA Astrophysics Data System (ADS)

    Lestari, Titik; Nugraha, Andri Dian

    2015-04-01

    Southern Sumatra region has a high level of seismicity due to the influence of the subduction system, Sumatra fault, Mentawai fault and stretching zone activities. The seismic activities of Southern Sumatra region are recorded by Meteorological Climatological and Geophysical Agency (MCGA's) Seismograph network. In this study, we used earthquake data catalog compiled by MCGA for 3013 events from 10 seismic stations around Southern Sumatra region for time periods of April 2009 - April 2014 in order to invert for the 3-D seismic velocities structure (Vp, Vs, and Vp/Vs ratio). We applied double-difference seismic tomography method (tomoDD) to determine Vp, Vs and Vp/Vs ratio with hypocenter adjustment. For the inversion procedure, we started from the initial 1-D seismic velocity model of AK135 and constant Vp/Vs of 1.73. The synthetic travel time from source to receiver was calculated using ray pseudo-bending technique, while the main tomographic inversion was applied using LSQR method. The resolution model was evaluated using checkerboard test and Derivative Weigh Sum (DWS). Our preliminary results show low Vp and Vs anomalies region along Bukit Barisan which is may be associated with weak zone of Sumatran fault and migration of partial melted material. Low velocity anomalies at 30-50 km depth in the fore arc region may indicated the hydrous material circulation because the slab dehydration. We detected low seismic seismicity in the fore arc region that may be indicated as seismic gap. It is coincides contact zone of high and low velocity anomalies. And two large earthquakes (Jambi and Mentawai) also occurred at the contact of contrast velocity.

  1. Imaging of 3-D seismic velocity structure of Southern Sumatra region using double difference tomographic method

    SciTech Connect

    Lestari, Titik; Nugraha, Andri Dian

    2015-04-24

    Southern Sumatra region has a high level of seismicity due to the influence of the subduction system, Sumatra fault, Mentawai fault and stretching zone activities. The seismic activities of Southern Sumatra region are recorded by Meteorological Climatological and Geophysical Agency (MCGA’s) Seismograph network. In this study, we used earthquake data catalog compiled by MCGA for 3013 events from 10 seismic stations around Southern Sumatra region for time periods of April 2009 – April 2014 in order to invert for the 3-D seismic velocities structure (Vp, Vs, and Vp/Vs ratio). We applied double-difference seismic tomography method (tomoDD) to determine Vp, Vs and Vp/Vs ratio with hypocenter adjustment. For the inversion procedure, we started from the initial 1-D seismic velocity model of AK135 and constant Vp/Vs of 1.73. The synthetic travel time from source to receiver was calculated using ray pseudo-bending technique, while the main tomographic inversion was applied using LSQR method. The resolution model was evaluated using checkerboard test and Derivative Weigh Sum (DWS). Our preliminary results show low Vp and Vs anomalies region along Bukit Barisan which is may be associated with weak zone of Sumatran fault and migration of partial melted material. Low velocity anomalies at 30-50 km depth in the fore arc region may indicated the hydrous material circulation because the slab dehydration. We detected low seismic seismicity in the fore arc region that may be indicated as seismic gap. It is coincides contact zone of high and low velocity anomalies. And two large earthquakes (Jambi and Mentawai) also occurred at the contact of contrast velocity.

  2. Simultaneous inversion of 3D velocity structure, hypocenter locations, and reflector geometry in Cascadia

    NASA Astrophysics Data System (ADS)

    Preston, Leiph Alexander

    We develop and apply a non-linear inversion of direct and wide-angle reflection travel times for 3-D P-wave velocity structure, earthquake hypocenters, and reflector geometry under NW Washington focusing on the structure of the subducting Juan de Fuca plate. The first-arrival travel times are derived from both active-source experiments and from local earthquakes. The reflection arrivals were picked from data collected during the 1998 Wet SHIPS active-source experiment, which consisted of air-gun sources within the inland water-ways of NW Washington and SW British Columbia to land-based stations. Our inversion procedure reduces the well-known trade-off between reflector position and the velocities above it by the combination of simultaneous inversion and adequate crossing paths. We interpret the wide-angle reflector as the Moho of the subducting Juan de Fuca slab. The relocated intraslab earthquakes separate into two groups: those located up-dip of the 45km reflector depth contour generally lie below the reflector in material whose velocity exceeds 7.7km/s, placing them within the subducting mantle, while those down-dip of this contour occur within material whose velocities are 6.8--7.5km/s, placing them within subducted oceanic crust. We interpret these groups of earthquakes as resulting from serpentine dehydration in the subducted mantle and the basalt to eclogite transformation in the subducted crust. We have performed velocity checkerboard, slab velocity resolution, and parameter sensitivity tests to estimate our ability to resolve the relationship among the reflector, intraslab hypocenters, and slab velocity structure. These tests indicate we have the necessary resolvability and can distinguish the relative locations among the velocities, reflector, and intraslab hypocenters within the subducting slab to +/-2km. The occurrence of events within the subducted mantle geometrically allows for larger magnitude earthquakes than could occur if they were confined to

  3. Seismic Hazard Maps for Seattle, Washington, Incorporating 3D Sedimentary Basin Effects, Nonlinear Site Response, and Rupture Directivity

    USGS Publications Warehouse

    Frankel, Arthur D.; Stephenson, William J.; Carver, David L.; Williams, Robert A.; Odum, Jack K.; Rhea, Susan

    2007-01-01

    This report presents probabilistic seismic hazard maps for Seattle, Washington, based on over 500 3D simulations of ground motions from scenario earthquakes. These maps include 3D sedimentary basin effects and rupture directivity. Nonlinear site response for soft-soil sites of fill and alluvium was also applied in the maps. The report describes the methodology for incorporating source and site dependent amplification factors into a probabilistic seismic hazard calculation. 3D simulations were conducted for the various earthquake sources that can affect Seattle: Seattle fault zone, Cascadia subduction zone, South Whidbey Island fault, and background shallow and deep earthquakes. The maps presented in this document used essentially the same set of faults and distributed-earthquake sources as in the 2002 national seismic hazard maps. The 3D velocity model utilized in the simulations was validated by modeling the amplitudes and waveforms of observed seismograms from five earthquakes in the region, including the 2001 M6.8 Nisqually earthquake. The probabilistic seismic hazard maps presented here depict 1 Hz response spectral accelerations with 10%, 5%, and 2% probabilities of exceedance in 50 years. The maps are based on determinations of seismic hazard for 7236 sites with a spacing of 280 m. The maps show that the most hazardous locations for this frequency band (around 1 Hz) are soft-soil sites (fill and alluvium) within the Seattle basin and along the inferred trace of the frontal fault of the Seattle fault zone. The next highest hazard is typically found for soft-soil sites in the Duwamish Valley south of the Seattle basin. In general, stiff-soil sites in the Seattle basin exhibit higher hazard than stiff-soil sites outside the basin. Sites with shallow bedrock outside the Seattle basin have the lowest estimated hazard for this frequency band.

  4. 3D P and S Wave Velocity Structure and Tremor Locations in the Parkfield Region

    NASA Astrophysics Data System (ADS)

    Zeng, X.; Thurber, C. H.; Shelly, D. R.; Bennington, N. L.; Cochran, E. S.; Harrington, R. M.

    2014-12-01

    We have assembled a new dataset to refine the 3D seismic velocity model in the Parkfield region. The S arrivals from 184 earthquakes recorded by the Parkfield Experiment to Record MIcroseismicity and Tremor array (PERMIT) during 2010-2011 were picked by a new S wave picker, which is based on machine learning. 74 blasts have been assigned to four quarries, whose locations were identified with Google Earth. About 1000 P and S wave arrivals from these blasts at permanent seismic network were also incorporated. Low frequency earthquakes (LFEs) occurring within non-volcanic tremor (NVT) are valuable for improving the precision of NVT location and the seismic velocity model at greater depths. Based on previous work (Shelley and Hardebeck, 2010), waveforms of hundreds of LFEs in same family were stacked to improve signal qualify. In a previous study (McClement et al., 2013), stacked traces of more than 30 LFE families at the Parkfileld Array Seismic Observatory (PASO) have been picked. We expanded our work to include LFEs recorded by the PERMIT array. The time-frequency Phase Weight Stacking (tf-PWS) method was introduced to improve the stack quality, as direct stacking does not produce clear S-wave arrivals on the PERMIT stations. This technique uses the coherence of the instantaneous phase among the stacked signals to enhance the signal-to-noise ratio (SNR) of the stack. We found that it is extremely effective for picking LFE arrivals (Thurber et al., 2014). More than 500 P and about 1000 S arrivals from 58 LFE families were picked at the PERMIT and PASO arrays. Since the depths of LFEs are much deeper than earthquakes, we are able to extend model resolution to lower crustal depths. Both P and S wave velocity structure have been obtained with the tomoDD method. The result suggests that there is a low velocity zone (LVZ) in the lower crust and the location of the LVZ is consistent with the high conductivity zone beneath the southern segment of the Rinconada fault that

  5. Kinematic ground motion simulations on rough faults including effects of 3D stochastic velocity perturbations

    USGS Publications Warehouse

    Graves, Robert; Pitarka, Arben

    2016-01-01

    We describe a methodology for generating kinematic earthquake ruptures for use in 3D ground‐motion simulations over the 0–5 Hz frequency band. Our approach begins by specifying a spatially random slip distribution that has a roughly wavenumber‐squared fall‐off. Given a hypocenter, the rupture speed is specified to average about 75%–80% of the local shear wavespeed and the prescribed slip‐rate function has a Kostrov‐like shape with a fault‐averaged rise time that scales self‐similarly with the seismic moment. Both the rupture time and rise time include significant local perturbations across the fault surface specified by spatially random fields that are partially correlated with the underlying slip distribution. We represent velocity‐strengthening fault zones in the shallow (<5  km) and deep (>15  km) crust by decreasing rupture speed and increasing rise time in these regions. Additional refinements to this approach include the incorporation of geometric perturbations to the fault surface, 3D stochastic correlated perturbations to the P‐ and S‐wave velocity structure, and a damage zone surrounding the shallow fault surface characterized by a 30% reduction in seismic velocity. We demonstrate the approach using a suite of simulations for a hypothetical Mw 6.45 strike‐slip earthquake embedded in a generalized hard‐rock velocity structure. The simulation results are compared with the median predictions from the 2014 Next Generation Attenuation‐West2 Project ground‐motion prediction equations and show very good agreement over the frequency band 0.1–5 Hz for distances out to 25 km from the fault. Additionally, the newly added features act to reduce the coherency of the radiated higher frequency (f>1  Hz) ground motions, and homogenize radiation‐pattern effects in this same bandwidth, which move the simulations closer to the statistical characteristics of observed motions as illustrated by comparison with recordings from

  6. Using Adjoint Methods to Improve 3-D Velocity Models of Southern California

    NASA Astrophysics Data System (ADS)

    Liu, Q.; Tape, C.; Maggi, A.; Tromp, J.

    2006-12-01

    We use adjoint methods popular in climate and ocean dynamics to calculate Fréchet derivatives for tomographic inversions in southern California. The Fréchet derivative of an objective function χ(m), where m denotes the Earth model, may be written in the generic form δχ=int Km(x) δln m(x) d3x, where δln m=δ m/m denotes the relative model perturbation. For illustrative purposes, we construct the 3-D finite-frequency banana-doughnut kernel Km, corresponding to the misfit of a single traveltime measurement, by simultaneously computing the 'adjoint' wave field s† forward in time and reconstructing the regular wave field s backward in time. The adjoint wave field is produced by using the time-reversed velocity at the receiver as a fictitious source, while the regular wave field is reconstructed on the fly by propagating the last frame of the wave field saved by a previous forward simulation backward in time. The approach is based upon the spectral-element method, and only two simulations are needed to produce density, shear-wave, and compressional-wave sensitivity kernels. This method is applied to the SCEC southern California velocity model. Various density, shear-wave, and compressional-wave sensitivity kernels are presented for different phases in the seismograms. We also generate 'event' kernels for Pnl, S and surface waves, which are the Fréchet kernels of misfit functions that measure the P, S or surface wave traveltime residuals at all the receivers simultaneously for one particular event. Effectively, an event kernel is a sum of weighted Fréchet kernels, with weights determined by the associated traveltime anomalies. By the nature of the 3-D simulation, every event kernel is also computed based upon just two simulations, i.e., its construction costs the same amount of computation time as an individual banana-doughnut kernel. One can think of the sum of the event kernels for all available earthquakes, called the 'misfit' kernel, as a graphical

  7. The effect of volumetric (3D) tactile symbols within inclusive tactile maps.

    PubMed

    Gual, Jaume; Puyuelo, Marina; Lloveras, Joaquim

    2015-05-01

    Point, linear and areal elements, which are two-dimensional and of a graphic nature, are the morphological elements employed when designing tactile maps and symbols for visually impaired users. However, beyond the two-dimensional domain, there is a fourth group of elements - volumetric elements - which mapmakers do not take sufficiently into account when it comes to designing tactile maps and symbols. This study analyses the effect of including volumetric, or 3D, symbols within a tactile map. In order to do so, the researchers compared two tactile maps. One of them uses only two-dimensional elements and is produced using thermoforming, one of the most popular systems in this field, while the other includes volumetric symbols, thus highlighting the possibilities opened up by 3D printing, a new area of production. The results of the study show that including 3D symbols improves the efficiency and autonomous use of these products.

  8. Computational methods for constructing protein structure models from 3D electron microscopy maps.

    PubMed

    Esquivel-Rodríguez, Juan; Kihara, Daisuke

    2013-10-01

    Protein structure determination by cryo-electron microscopy (EM) has made significant progress in the past decades. Resolutions of EM maps have been improving as evidenced by recently reported structures that are solved at high resolutions close to 3Å. Computational methods play a key role in interpreting EM data. Among many computational procedures applied to an EM map to obtain protein structure information, in this article we focus on reviewing computational methods that model protein three-dimensional (3D) structures from a 3D EM density map that is constructed from two-dimensional (2D) maps. The computational methods we discuss range from de novo methods, which identify structural elements in an EM map, to structure fitting methods, where known high resolution structures are fit into a low-resolution EM map. A list of available computational tools is also provided.

  9. Identifying the third dimension in 2D fluoroscopy to create 3D cardiac maps

    PubMed Central

    Krum, David; Choudhuri, Indrajit; Belanger, Barry; Palma, Mark; Brodnick, Donald; Rowe, Daniel B.

    2016-01-01

    Three-dimensional cardiac mapping is important for optimal visualization of the heart during cardiac ablation for the treatment of certain arrhythmias. However, many hospitals and clinics worldwide cannot afford the high cost of the current mapping systems. We set out to determine if, using predefined algorithms, comparable 3D cardiac maps could be created by a new device that relies on data generated from single-plane fluoroscopy and patient recording and monitoring systems, without the need for costly equipment, infrastructure changes, or specialized catheters. The study included phantom and animal experiments to compare the prototype test device, Navik 3D, with the existing CARTO 3 System. The primary endpoint directly compared: (a) the 3D distance between the Navik 3D–simulated ablation location and the back-projected ground truth location of the pacing and mapping catheter electrode, and (b) the same distance for CARTO. The study’s primary objective was considered met if the 95% confidence lower limit was greater than 0.75% for the Navik 3D–CARTO difference between the 2 distances, or less than or equal to 2 mm. Study results showed that the Navik 3D performance was equivalent to the CARTO system, and that accurate 3D cardiac maps can be created using data from equipment that already exists in all electrophysiology labs. PMID:28018976

  10. 3-D shear wave radially and azimuthally anisotropic velocity model of the North American upper mantle

    NASA Astrophysics Data System (ADS)

    Yuan, Huaiyu; Romanowicz, Barbara; Fischer, Karen M.; Abt, David

    2011-03-01

    Using a combination of long period seismic waveforms and SKS splitting measurements, we have developed a 3-D upper-mantle model (SAWum_NA2) of North America that includes isotropic shear velocity, with a lateral resolution of ˜250 km, as well as radial and azimuthal anisotropy, with a lateral resolution of ˜500 km. Combining these results, we infer several key features of lithosphere and asthenosphere structure. A rapid change from thin (˜70-80 km) lithosphere in the western United States (WUS) to thick lithosphere (˜200 km) in the central, cratonic part of the continent closely follows the Rocky Mountain Front (RMF). Changes with depth of the fast axis direction of azimuthal anisotropy reveal the presence of two layers in the cratonic lithosphere, corresponding to the fast-to-slow discontinuity found in receiver functions. Below the lithosphere, azimuthal anisotropy manifests a maximum, stronger in the WUS than under the craton, and the fast axis of anisotropy aligns with the absolute plate motion, as described in the hotspot reference frame (HS3-NUVEL 1A). In the WUS, this zone is confined between 70 and 150 km, decreasing in strength with depth from the top, from the RMF to the San Andreas Fault system and the Juan de Fuca/Gorda ridges. This result suggests that shear associated with lithosphere-asthenosphere coupling dominates mantle deformation down to this depth in the western part of the continent. The depth extent of the zone of increased azimuthal anisotropy below the cratonic lithosphere is not well resolved in our study, although it is peaked around 270 km, a robust result. Radial anisotropy is such that, predominantly, ξ > 1, where ξ= (Vsh/Vsv)2, under the continent and its borders down to ˜200 km, with stronger ξ in the bordering oceanic regions. Across the continent and below 200 km, alternating zones of weaker and stronger radial anisotropy, with predominantly ξ < 1, correlate with zones of small lateral changes in the fast axis direction of

  11. An image encryption algorithm based on 3D cellular automata and chaotic maps

    NASA Astrophysics Data System (ADS)

    Del Rey, A. Martín; Sánchez, G. Rodríguez

    2015-05-01

    A novel encryption algorithm to cipher digital images is presented in this work. The digital image is rendering into a three-dimensional (3D) lattice and the protocol consists of two phases: the confusion phase where 24 chaotic Cat maps are applied and the diffusion phase where a 3D cellular automata is evolved. The encryption method is shown to be secure against the most important cryptanalytic attacks.

  12. Real-time volume rendering of 4D image using 3D texture mapping

    NASA Astrophysics Data System (ADS)

    Hwang, Jinwoo; Kim, June-Sic; Kim, Jae Seok; Kim, In Young; Kim, Sun Il

    2001-05-01

    Four dimensional image is 3D volume data that varies with time. It is used to express deforming or moving object in virtual surgery of 4D ultrasound. It is difficult to render 4D image by conventional ray-casting or shear-warp factorization methods because of their time-consuming rendering time or pre-processing stage whenever the volume data are changed. Even 3D texture mapping is used, repeated volume loading is also time-consuming in 4D image rendering. In this study, we propose a method to reduce data loading time using coherence between currently loaded volume and previously loaded volume in order to achieve real time rendering based on 3D texture mapping. Volume data are divided into small bricks and each brick being loaded is tested for similarity to one which was already loaded in memory. If the brick passed the test, it is defined as 3D texture by OpenGL functions. Later, the texture slices of the brick are mapped into polygons and blended by OpenGL blending functions. All bricks undergo this test. Continuously deforming fifty volumes are rendered in interactive time with SGI ONYX. Real-time volume rendering based on 3D texture mapping is currently available on PC.

  13. Velocity selection in coupled-map lattices

    NASA Astrophysics Data System (ADS)

    Parekh, Nita; Puri, Sanjay

    1993-02-01

    We investigate the phenomenon of velocity selection for traveling wave fronts in a class of coupled-map lattices, derived by discretizations of the Fisher equation [Ann. Eugenics 7, 355 (1937)]. We find that the velocity selection can be understood in terms of a discrete analog of the marginal-stability hypothesis. A perturbative approach also enables us to estimate the selected velocity accurately for small values of the discretization mesh sizes.

  14. The application of iterative closest point (ICP) registration to improve 3D terrain mapping estimates using the flash 3D ladar system

    NASA Astrophysics Data System (ADS)

    Woods, Jack; Armstrong, Ernest E.; Armbruster, Walter; Richmond, Richard

    2010-04-01

    The primary purpose of this research was to develop an effective means of creating a 3D terrain map image (point-cloud) in GPS denied regions from a sequence of co-bore sighted visible and 3D LIDAR images. Both the visible and 3D LADAR cameras were hard mounted to a vehicle. The vehicle was then driven around the streets of an abandoned village used as a training facility by the German Army and imagery was collected. The visible and 3D LADAR images were then fused and 3D registration performed using a variation of the Iterative Closest Point (ICP) algorithm. The ICP algorithm is widely used for various spatial and geometric alignment of 3D imagery producing a set of rotation and translation transformations between two 3D images. ICP rotation and translation information obtain from registering the fused visible and 3D LADAR imagery was then used to calculate the x-y plane, range and intensity (xyzi) coordinates of various structures (building, vehicles, trees etc.) along the driven path. The xyzi coordinates information was then combined to create a 3D terrain map (point-cloud). In this paper, we describe the development and application of 3D imaging techniques (most specifically the ICP algorithm) used to improve spatial, range and intensity estimates of imagery collected during urban terrain mapping using a co-bore sighted, commercially available digital video camera with focal plan of 640×480 pixels and a 3D FLASH LADAR. Various representations of the reconstructed point-clouds for the drive through data will also be presented.

  15. Poroelastic Wave Propagation With a 3D Velocity-Stress-Pressure Finite-Difference Algorithm

    NASA Astrophysics Data System (ADS)

    Aldridge, D. F.; Symons, N. P.; Bartel, L. C.

    2004-12-01

    Seismic wave propagation within a three-dimensional, heterogeneous, isotropic poroelastic medium is numerically simulated with an explicit, time-domain, finite-difference algorithm. A system of thirteen, coupled, first-order, partial differential equations is solved for the particle velocity vector components, the stress tensor components, and the pressure associated with solid and fluid constituents of the two-phase continuum. These thirteen dependent variables are stored on staggered temporal and spatial grids, analogous to the scheme utilized for solution of the conventional velocity-stress system of isotropic elastodynamics. Centered finite-difference operators possess 2nd-order accuracy in time and 4th-order accuracy in space. Seismological utility is enhanced by an optional stress-free boundary condition applied on a horizontal plane representing the earth's surface. Absorbing boundary conditions are imposed on the flanks of the 3D spatial grid via a simple wavefield amplitude taper approach. A massively parallel computational implementation, utilizing the spatial domain decomposition strategy, allows investigation of large-scale earth models and/or broadband wave propagation within reasonable execution times. Initial algorithm testing indicates that a point force density and/or moment density source activated within a poroelastic medium generates diverging fast and slow P waves (and possibly an S-wave)in accord with Biot theory. Solid and fluid particle velocities are in-phase for the fast P-wave, whereas they are out-of-phase for the slow P-wave. Conversions between all wave types occur during reflection and transmission at interfaces. Thus, although the slow P-wave is regarded as difficult to detect experimentally, its presence is strongly manifest within the complex of waves generated at a lithologic or fluid boundary. Very fine spatial and temporal gridding are required for high-fidelity representation of the slow P-wave, without inducing excessive

  16. 3D crustal seismic velocity model for the Gulf of Cadiz and adjacent areas (SW Iberia margin) based on seismic reflection and refraction profiles

    NASA Astrophysics Data System (ADS)

    Lozano, Lucía; Cantavella, Juan Vicente; Barco, Jaime; Carranza, Marta; Burforn, Elisa

    2016-04-01

    The Atlantic margin of the SW Iberian Peninsula and northern Morocco has been subject of study during the last 30 years. Many seismic reflection and refraction profiles have been carried out offshore, providing detailed information about the crustal structure of the main seafloor tectonic domains in the region, from the South Portuguese Zone and the Gulf of Cadiz to the Abyssal Plains and the Josephine Seamount. The interest to obtain a detailed and realistic velocity model for this area, integrating the available data from these studies, is clear, mainly to improve real-time earthquake hypocentral location and for tsunami and earthquake early warning. Since currently real-time seismic location tools allow the implementation of 3D velocity models, we aim to generate a full 3D crustal model. For this purpose we have reviewed more than 50 profiles obtained in different seismic surveys, from 1980 to 2008. Data from the most relevant and reliable 2D seismic velocity published profiles were retrieved. We first generated a Moho depth map of the studied area (latitude 32°N - 41°N and longitude 15°W - 5°W) by extracting Moho depths along each digitized profile with a 10 km spacing, and then interpolating this dataset using ordinary kriging method and generating the contour isodepth map. Then, a 3D crustal velocity model has been obtained. Selected vertical sections at different distances along each profile were considered to retrieve P-wave velocity values at each interface in order to reproduce the geometry and the velocity gradient within each layer. A double linear interpolation, both in distance and depth, with sampling rates of 10 km and 1 km respectively, was carried out to generate a (latitude, longitude, depth, velocity) matrix. This database of all the profiles was interpolated to obtain the P-wave velocity distribution map every kilometer of depth. The new 3D velocity model has been integrated in NonLinLoc location program to relocate several representative

  17. 3D P-wave velocity structure of the deep Galicia rifted margin: A first analysis of the Galicia 3D wide-angle seismic dataset

    NASA Astrophysics Data System (ADS)

    Bayrakci, Gaye; Minshull, Timothy A.; Davy, Richard G.; Karplus, Marianne S.; Kaeschen, Dirk; Papenberg, Cord; Krabbenhoeft, Anne; Sawyer, Dale; Reston, Timothy J.; Shillington, Donna J.; Ranero, César R.

    2014-05-01

    Galicia 3D, a reflection-refraction and long offset seismic experiment was carried out from May through September 2013, at the Galicia rifted margin (in the northeast Atlantic Ocean, west of Spain) as a collaboration between US, UK, German and Spanish groups. The 3D multichannel seismic acquisition conducted by R/V Marcus Langseth covered a 64 km by 20 km (1280 km2) zone where the main geological features are the Peridotite Ridge (PR), composed of serpentinized peridotite and thought be upper mantle exhumed to the seafloor during rifting, and the S reflector which has been interpreted to be a low angle detachment fault overlain by fault bounded, rotated, continental crustal blocks. In the 3D box, two airgun arrays of 3300 cu.in. were fired alternately (in flip-flop configuration) every 37.5 m. All shots are recorded by 44 short period four component ocean bottom seismometers (OBS) and 26 ocean bottom hydrophones (OBH) deployed and recovered by R/V Poseidon, as well as four 6 km hydrophone streamers with 12.5 m channel spacing towed by R/V Marcus Langseth. We present the preliminary results of the first arrival time tomography study which is carried out with a subset of the wide-angle dataset, in order to generate a 3D P-wave velocity volume for the entire depth sampled by the reflection data. After the relocation of OBSs and OBHs, an automatic first-arrival time picking approach is applied to a subset of the dataset, which comprises more than 5.5 million source-receiver pairs. Then, the first-arrival times are checked visually, in 3-dimensions. The a priori model used for the first-arrival time tomography is built up using information from previous seismic surveys carried out at the Galicia margin (e.g. ISE, 1997). The FAST algorithm of Zelt and Barton (1998) is used for the first-arrival time inversion. The 3D P-wave velocity volume can be used in interpreting the reflection dataset, as a starting point for migration, to quantify the thinning of the crustal layers

  18. Vulnerability mapping of groundwater contamination based on 3D lithostratigraphical models of porous aquifers.

    PubMed

    Ducci, Daniela; Sellerino, Mariangela

    2013-03-01

    The aim of this paper is to apply a methodology in order to reconstruct a lithostratigraphic 3D model of an aquifer so as to define some parameters involved in the evaluation of the aquifer vulnerability to contamination of porous aquifers. The DRASTIC, SINTACS and AVI methods have been applied to an alluvial coastal aquifer of southern Italy. The stratigraphic reconstruction has been obtained by interpolating stratigraphic data from more than one borehole per 2 km. The lithostratigraphic reconstruction of a 3D model has been applied and used for three-dimensional or two-dimensional representations. In the first two methods, the layers of the vadose zone and the aquifer media have been evaluated not only by the interpolation of the single boreholes and piezometers, but also by the 3D model, assigning the scores of the parameters of each layer of the 3D model. The comparison between the maps constructed from the weighted values in each borehole and the maps deriving from the attribution of the values of each layer of the 3D model, highlights that the second representation avoids or minimizes the "bullseye" effect linked to the presence of boreholes with higher or lower values. The study has demonstrated that it is possible to integrate a 3D lithostratigraphic model of an aquifer in the assessment of the parameters involved in the evaluation of the aquifer vulnerability to contamination by Point Count System methods.

  19. 3-D ultrafast Doppler imaging applied to the noninvasive mapping of blood vessels in vivo.

    PubMed

    Provost, Jean; Papadacci, Clement; Demene, Charlie; Gennisson, Jean-Luc; Tanter, Mickael; Pernot, Mathieu

    2015-08-01

    Ultrafast Doppler imaging was introduced as a technique to quantify blood flow in an entire 2-D field of view, expanding the field of application of ultrasound imaging to the highly sensitive anatomical and functional mapping of blood vessels. We have recently developed 3-D ultrafast ultrasound imaging, a technique that can produce thousands of ultrasound volumes per second, based on a 3-D plane and diverging wave emissions, and demonstrated its clinical feasibility in human subjects in vivo. In this study, we show that noninvasive 3-D ultrafast power Doppler, pulsed Doppler, and color Doppler imaging can be used to perform imaging of blood vessels in humans when using coherent compounding of 3-D tilted plane waves. A customized, programmable, 1024-channel ultrasound system was designed to perform 3-D ultrafast imaging. Using a 32 × 32, 3-MHz matrix phased array (Vermon, Tours, France), volumes were beamformed by coherently compounding successive tilted plane wave emissions. Doppler processing was then applied in a voxel-wise fashion. The proof of principle of 3-D ultrafast power Doppler imaging was first performed by imaging Tygon tubes of various diameters, and in vivo feasibility was demonstrated by imaging small vessels in the human thyroid. Simultaneous 3-D color and pulsed Doppler imaging using compounded emissions were also applied in the carotid artery and the jugular vein in one healthy volunteer.

  20. Velocity Measurement in Carotid Artery: Quantitative Comparison of Time-Resolved 3D Phase-Contrast MRI and Image-based Computational Fluid Dynamics

    PubMed Central

    Sarrami-Foroushani, Ali; Nasr Esfahany, Mohsen; Nasiraei Moghaddam, Abbas; Saligheh Rad, Hamidreza; Firouznia, Kavous; Shakiba, Madjid; Ghanaati, Hossein; Wilkinson, Iain David; Frangi, Alejandro Federico

    2015-01-01

    Background: Understanding hemodynamic environment in vessels is important for realizing the mechanisms leading to vascular pathologies. Objectives: Three-dimensional velocity vector field in carotid bifurcation is visualized using TR 3D phase-contrast magnetic resonance imaging (TR 3D PC MRI) and computational fluid dynamics (CFD). This study aimed to present a qualitative and quantitative comparison of the velocity vector field obtained by each technique. Subjects and Methods: MR imaging was performed on a 30-year old male normal subject. TR 3D PC MRI was performed on a 3 T scanner to measure velocity in carotid bifurcation. 3D anatomical model for CFD was created using images obtained from time-of-flight MR angiography. Velocity vector field in carotid bifurcation was predicted using CFD and PC MRI techniques. A statistical analysis was performed to assess the agreement between the two methods. Results: Although the main flow patterns were the same for the both techniques, CFD showed a greater resolution in mapping the secondary and circulating flows. Overall root mean square (RMS) errors for all the corresponding data points in PC MRI and CFD were 14.27% in peak systole and 12.91% in end diastole relative to maximum velocity measured at each cardiac phase. Bland-Altman plots showed a very good agreement between the two techniques. However, this study was not aimed to validate any of methods, instead, the consistency was assessed to accentuate the similarities and differences between Time-resolved PC MRI and CFD. Conclusion: Both techniques provided quantitatively consistent results of in vivo velocity vector fields in right internal carotid artery (RCA). PC MRI represented a good estimation of main flow patterns inside the vasculature, which seems to be acceptable for clinical use. However, limitations of each technique should be considered while interpreting results. PMID:26793288

  1. Design of 3D scanner for surface contour mapping by ultrasonic sensor

    NASA Astrophysics Data System (ADS)

    Munir, Muhammad Miftahul; Billah, Mohammad Aziz; Surachman, Arif; Budiman, Maman; Khairurrijal

    2015-04-01

    Surface mapping systems have attracted great attention due to their potential applications in many areas. In this paper, a simple 3D scanner based on ultrasonic sensor was designed for mapping a contour of object surface. The scanner using an SRF02 ultrasonic sensor, a microcontroller and radio frequency (RF) module to collect coordinates of object surface (point cloud), and sent data to computer. The point cloud collection process was performed by moving two ultrasonic sensors in y and x directions. Both sensors measure a distance from an object surface to a reference point of each sensor. The measurement results represent the point cloud of object surface and the data will be sent to computer via RF module. The point cloud then converted to 3D model using MATLAB. It was found that the object contours can be reconstructed very well by the developed 3D scanner system.

  2. 3D mapping of the dense interstellar gas around the Local Bubble

    NASA Astrophysics Data System (ADS)

    Lallement, R.; Welsh, B. Y.; Vergely, J. L.; Crifo, F.; Sfeir, D.

    2003-12-01

    We present intermediate results from a long-term program of mapping the neutral absorption characteristics of the local interstellar medium, motivated by the availability of accurate and consistent parallaxes from the Hipparcos satellite. Equivalent widths of the interstellar NaI D-line doublet at 5890 Å are presented for the lines-of-sight towards some 311 new target stars lying within ~ 350 pc of the Sun. Using these data, together with NaI absorption measurements towards a further ~ 240 nearby targets published in the literature (for many of them, in the directions of molecular clouds), and the ~ 450 lines-of-sight already presented by (Sfeir et al. \\cite{sfeir99}), we show 3D absorption maps of the local distribution of neutral gas towards 1005 sight-lines with Hipparcos distances as viewed from a variety of different galactic projections. The data are synthesized by means of two complementary methods, (i) by mapping of iso-equivalent width contours, and (ii) by density distribution calculation from the inversion of column-densities, a method devised by Vergely et al. (\\cite{vergely01}). Our present data confirms the view that the local cavity is deficient in cold and neutral interstellar gas. The closest dense and cold gas ``wall'', in the first quadrant, is at ~ 55-60 pc. There are a few isolated clouds at closer distance, if the detected absorption is not produced by circumstellar material. The maps reveal narrow or wide ``interstellar tunnels'' which connect the Local Bubble to surrounding cavities, as predicted by the model of Cox & Smith (1974). In particular, one of these tunnels, defined by stars at 300 to 600 pc from the Sun showing negligible sodium absorption, connects the well known CMa void (Gry et al. \\cite{gry85}), which is part of the Local Bubble, with the supershell GSH 238+00+09 (Heiles \\cite{heiles98}). High latitude lines-of-sight with the smallest absorption are found in two ``chimneys'', whose directions are perpendicular to the

  3. A hybrid experimental-numerical technique for determining 3D velocity fields from planar 2D PIV data

    NASA Astrophysics Data System (ADS)

    Eden, A.; Sigurdson, M.; Mezić, I.; Meinhart, C. D.

    2016-09-01

    Knowledge of 3D, three component velocity fields is central to the understanding and development of effective microfluidic devices for lab-on-chip mixing applications. In this paper we present a hybrid experimental-numerical method for the generation of 3D flow information from 2D particle image velocimetry (PIV) experimental data and finite element simulations of an alternating current electrothermal (ACET) micromixer. A numerical least-squares optimization algorithm is applied to a theory-based 3D multiphysics simulation in conjunction with 2D PIV data to generate an improved estimation of the steady state velocity field. This 3D velocity field can be used to assess mixing phenomena more accurately than would be possible through simulation alone. Our technique can also be used to estimate uncertain quantities in experimental situations by fitting the gathered field data to a simulated physical model. The optimization algorithm reduced the root-mean-squared difference between the experimental and simulated velocity fields in the target region by more than a factor of 4, resulting in an average error less than 12% of the average velocity magnitude.

  4. The Use of Uas for Rapid 3d Mapping in Geomatics Education

    NASA Astrophysics Data System (ADS)

    Teo, Tee-Ann; Tian-Yuan Shih, Peter; Yu, Sz-Cheng; Tsai, Fuan

    2016-06-01

    With the development of technology, UAS is an advance technology to support rapid mapping for disaster response. The aim of this study is to develop educational modules for UAS data processing in rapid 3D mapping. The designed modules for this study are focused on UAV data processing from available freeware or trial software for education purpose. The key modules include orientation modelling, 3D point clouds generation, image georeferencing and visualization. The orientation modelling modules adopts VisualSFM to determine the projection matrix for each image station. Besides, the approximate ground control points are measured from OpenStreetMap for absolute orientation. The second module uses SURE and the orientation files from previous module for 3D point clouds generation. Then, the ground point selection and digital terrain model generation can be archived by LAStools. The third module stitches individual rectified images into a mosaic image using Microsoft ICE (Image Composite Editor). The last module visualizes and measures the generated dense point clouds in CloudCompare. These comprehensive UAS processing modules allow the students to gain the skills to process and deliver UAS photogrammetric products in rapid 3D mapping. Moreover, they can also apply the photogrammetric products for analysis in practice.

  5. Quantification of velocity reduction after flow diverter placement in intracranial aneurysm: An ex vivo study with 3D printed replicas.

    PubMed

    Anderson, Jeff R; Klucznik, Richard; Diaz, Orlando; Zhang, Y Jonathan; Britz, Gavin W; Grossman, Robert G; Karmonik, Christof

    2015-01-01

    Phase contrast MRI (pcMRI) was used to measure flow before and after placement of a flow diverter (n = 3). Decreases from 18% to 31% in flow velocity were seen in the inflow jet of the aneurysms. Flow patterns were also compared. It was observed that the gross aneurysmal flow patterns were maintained after flow diverter placement despite decreased fluid velocities. All measurements were carried out in 3D printed aneurysm replicas.

  6. From digital mapping to GIS-based 3D visualization of geological maps: example from the Western Alps geological units

    NASA Astrophysics Data System (ADS)

    Balestro, Gianni; Cassulo, Roberto; Festa, Andrea; Fioraso, Gianfranco; Nicolò, Gabriele; Perotti, Luigi

    2015-04-01

    Collection of field geological data and sharing of geological maps are nowadays greatly enhanced by using digital tools and IT (Information Technology) applications. Portable hardware allows accurate GPS localization of data and homogeneous storing of information in field databases, whereas GIS (Geographic Information Systems) applications enable generalization of field data and realization of geological map databases. A further step in the digital processing of geological map information consists of building virtual visualization by means of GIS-based 3D viewers, that allow projection and draping of significant geological features over photo-realistic terrain models. Digital fieldwork activities carried out by the Authors in the Western Alps, together with building of geological map databases and related 3D visualizations, are an example of application of the above described digital technologies. Digital geological mapping was performed by means of a GIS mobile software loaded on a rugged handheld device, and lithological, structural and geomorphological features with their attributes were stored in different layers that form the field database. The latter was then generalized through usual map processing steps such as outcrops interpolation, characterization of geological boundaries and selection of meaningful punctual observations. This map databases was used for building virtual visualizations through a GIS-based 3D-viewer that loaded detailed DTM (resolution of 5 meters) and aerial images. 3D visualizations were focused on projection and draping of significant stratigraphic contacts (e.g. contacts that separate different Quaternary deposits) and tectonic contacts (i.e. exhumation-related contacts that dismembered original ophiolite sequences). In our experience digital geological mapping and related databases ensured homogeneous data storing and effective sharing of information, and allowed subsequent building of 3D GIS-based visualizations. The latters gave

  7. Protein contact maps: A binary depiction of protein 3D structures

    NASA Astrophysics Data System (ADS)

    Emerson, Isaac Arnold; Amala, Arumugam

    2017-01-01

    In recent years, there has been a considerable interest in examining the structure and dynamics of complex networks. Proteins in 3D space may also be considered as complex systems emerged through the interactions of their constituent amino acids. This representation provides a powerful framework to uncover the general organized principle of protein contact network. Here we reviewed protein contact map in terms of protein structure prediction and analyses. In addition, we had also discussed the various computational techniques for the prediction of protein contact maps and the tools to visualize contact maps.

  8. Low-Velocity Impact Response and Finite Element Analysis of Four-Step 3-D Braided Composites

    NASA Astrophysics Data System (ADS)

    Sun, Baozhong; Zhang, Yan; Gu, Bohong

    2013-08-01

    The low-velocity impact characters of 3-D braided carbon/epoxy composites were investigated from experimental and finite element simulation approaches. The quasi-static tests were carried out at a constant velocity of 2 mm/min on MTS 810.23 material tester system to obtain the indentation load-displacement curves and indentation damages. The low-velocity tests were conducted at the velocities from 1 m/s to 6 m/s (corresponding to the impact energy from 3.22 J to 116 J) on Instron Dynatup 9250 impact tester. The peak force, energy for peak force, time to peak force, and total energy absorption were obtained to determine the impact responses of 3-D braided composites. A unit cell model was established according to the microstructure of 3-D braided composites to derive the constitutive equation. Based on the model, a user-defined material subroutine (VUMAT) has been compiled by FORTRAN and connected with commercial finite element code ABAQUS/Explicit to calculate the impact damage. The unit cell model successfully predicted the impact response of 3-D braided composites. Furthermore, the stress wave propagation and failure mechanisms have been revealed from the finite element simulation results and ultimate damage morphologies of specimens.

  9. 3D Geological Mapping - uncovering the subsurface to increase environmental understanding

    NASA Astrophysics Data System (ADS)

    Kessler, H.; Mathers, S.; Peach, D.

    2012-12-01

    Geological understanding is required for many disciplines studying natural processes from hydrology to landscape evolution. The subsurface structure of rocks and soils and their properties occupies three-dimensional (3D) space and geological processes operate in time. Traditionally geologists have captured their spatial and temporal knowledge in 2 dimensional maps and cross-sections and through narrative, because paper maps and later two dimensional geographical information systems (GIS) were the only tools available to them. Another major constraint on using more explicit and numerical systems to express geological knowledge is the fact that a geologist only ever observes and measures a fraction of the system they study. Only on rare occasions does the geologist have access to enough real data to generate meaningful predictions of the subsurface without the input of conceptual understanding developed from and knowledge of the geological processes responsible for the deposition, emplacement and diagenesis of the rocks. This in turn has led to geology becoming an increasingly marginalised science as other disciplines have embraced the digital world and have increasingly turned to implicit numerical modelling to understand environmental processes and interactions. Recent developments in geoscience methodology and technology have gone some way to overcoming these barriers and geologists across the world are beginning to routinely capture their knowledge and combine it with all available subsurface data (of often highly varying spatial distribution and quality) to create regional and national geological three dimensional geological maps. This is re-defining the way geologists interact with other science disciplines, as their concepts and knowledge are now expressed in an explicit form that can be used downstream to design process models structure. For example, groundwater modellers can refine their understanding of groundwater flow in three dimensions or even directly

  10. 3D volume MR temperature mapping for HIFU heating trajectory comparisons

    NASA Astrophysics Data System (ADS)

    Todd, Nick; Vyas, Urvi; de Bever, Josh; Payne, Allison; Parker, Dennis L.

    2012-10-01

    Many areas of MR-guided thermal therapy research would benefit from temperature maps with high spatial and temporal resolution that cover a large 3-D volume. This paper describes an approach to achieve these goals that is suitable for research applications where retrospective reconstruction of the temperature maps is acceptable. The method acquires undersampled data from a modified 3-D segmented EPI sequence and creates images using a temporally constrained reconstruction algorithm. The 3-D images can be zero-filled to arbitrarily small voxel spacing in all directions and then converted into temperature maps using the standard proton resonance frequency (PRF) shift technique. During HIFU heating experiments, the proposed method was used to obtain temperature maps with 1.5×1.5×3.0 mm resolution, 288×162×78 mm field of view, and 1.7 second temporal resolution. The approach is validated to demonstrate that it can accurately capture the spatial characteristics and time dynamics of rapidly changing HIFU-induced temperature distributions. An example application is presented where the method is used to analyze and compare different HIFU volumetric heating trajectories.

  11. Mapping 3D fiber orientation in tissue using dual-angle optical polarization tractography

    PubMed Central

    Wang, Y.; Ravanfar, M.; Zhang, K.; Duan, D.; Yao, G.

    2016-01-01

    Optical polarization tractography (OPT) has recently been applied to map fiber organization in the heart, skeletal muscle, and arterial vessel wall with high resolution. The fiber orientation measured in OPT represents the 2D projected fiber angle in a plane that is perpendicular to the incident light. We report here a dual-angle extension of the OPT technology to measure the actual 3D fiber orientation in tissue. This method was first verified by imaging the murine extensor digitorum muscle placed at various known orientations in space. The accuracy of the method was further studied by analyzing the 3D fiber orientation of the mouse tibialis anterior muscle. Finally we showed that dual-angle OPT successfully revealed the unique 3D “arcade” fiber structure in the bovine articular cartilage. PMID:27867698

  12. Mapping 3D fiber orientation in tissue using dual-angle optical polarization tractography.

    PubMed

    Wang, Y; Ravanfar, M; Zhang, K; Duan, D; Yao, G

    2016-10-01

    Optical polarization tractography (OPT) has recently been applied to map fiber organization in the heart, skeletal muscle, and arterial vessel wall with high resolution. The fiber orientation measured in OPT represents the 2D projected fiber angle in a plane that is perpendicular to the incident light. We report here a dual-angle extension of the OPT technology to measure the actual 3D fiber orientation in tissue. This method was first verified by imaging the murine extensor digitorum muscle placed at various known orientations in space. The accuracy of the method was further studied by analyzing the 3D fiber orientation of the mouse tibialis anterior muscle. Finally we showed that dual-angle OPT successfully revealed the unique 3D "arcade" fiber structure in the bovine articular cartilage.

  13. 3D crustal velocity structure beneath the broadband seismic array in the Gyeongju area of Korea by receiver function analyses

    NASA Astrophysics Data System (ADS)

    Lee, Dong Hun; Lee, Jung Mo; Cho, Hyun-Moo; Kang, Tae-Seob

    2016-10-01

    A temporary seismic array was in operation between October 2010 and March 2013 in the Gyeongju area of Korea. Teleseismic records of the seismic array appropriate for receiver function analysis were collected, and selected seismograms were split into five groups based on epicenters-the Banda-Molucca, Sumatra, Iran, Aleutian, and Vanuatu groups. 1D velocity structures beneath each seismic station were estimated by inverting the stacked receiver functions for possible groups. The inversion was done by applying a genetic algorithm, whereas surface wave dispersion data were used as constraints to avoid non-uniqueness in the inversion. The composite velocity structure was constructed by averaging the velocity structures weighted by the number of receiver functions used in stacking. The uncertainty analysis for the velocity structures showed that the average of 95% confidence intervals was ± 0.1 km/s. The 3D velocity structure was modeled through interpolation of 1D composite velocity structures. Moho depths were determined in each composite velocity structure based on the AK135-F S-wave velocity model, and the depths were similar to the H-κ analysis results. The deepest Moho depth in the study area was found to be 31.9 km, and the shallowest, was 25.9 km. The Moho discontinuity dips in a southwestward direction beneath the area. A low velocity layer was also detected between 4 and 14 km depth. Adakitic intrusions and/or a high geothermal gradient appear to be the causes of this low velocity layer. The 3D velocity structure can be used to reliably assess seismic hazards in this area.

  14. Choroidal Thickness in Patients With Reticular Pseudodrusen Using 3D 1060-nm OCT Maps

    PubMed Central

    Haas, Paulina; Esmaeelpour, Marieh; Ansari-Shahrezaei, Siamak; Drexler, Wolfgang; Binder, Susanne

    2014-01-01

    Purpose. To map and analyze choroidal thickness (ChT) in AMD patients with reticular pseudodrusen (RPD) using three-dimensional (3D) 1060-nm optical coherence tomography (OCT). Methods. Fifty eyes from 25 patients with RPD were grouped according to the severity of AMD and the presence of RPD. All patients were imaged by high-speed (60,000 A-scans/s) 3D 1060-nm OCT over a 36 × 36° field of view. Choroidal thickness maps were automatically generated and compared with RPD areas visualized by fundus autofluorescence and infrared imaging. Retinal thickness maps, ChT maps, Haller's and Sattler's layer thickness were statistically analyzed between groups. Results. The mean ± SD (micrometers) subfoveal ChT was 201 ± 88 μm, 145 ± 48 μm, and 271 ± 130 μm for dry AMD with RPD, wet AMD with RPD, and eyes with wet AMD and no RPD, respectively. Choroidal thickness maps demonstrated the most significant choroidal thinning within eyes with wet AMD and RPD. Sattler's and Haller's layer thickness differed across the Early Treatment Diabetic Retinopathy Study grid when compared between eyes with and without RPD. Within eyes with RPD, ChT maps visualized that ChT was thicker below RDP areas than non-RPD areas. Conclusions. The 3D 1060-nm OCT choroidal maps over a large field of view offer noninvasive visualization for demonstrating local thickening correlation with RPD within each eye and overall thinning owing to AMD severity and RPD. This choroidal thinning was most striking in Sattler's layer, suggesting a choroidopathy of this vascular layer. PMID:24651554

  15. Comparison of interferometric and stereo-radargrammetric 3D metrics in mapping of forest resources

    NASA Astrophysics Data System (ADS)

    Karila, K.; Karjalainen, M.; Yu, X.; Vastaranta, M.; Holopainen, M.; Hyyppa, J.

    2015-04-01

    Accurate forest resources maps are needed in diverse applications ranging from the local forest management to the global climate change research. In particular, it is important to have tools to map changes in forest resources, which helps us to understand the significance of the forest biomass changes in the global carbon cycle. In the task of mapping changes in forest resources for wide areas, Earth Observing satellites could play the key role. In 2013, an EU/FP7-Space funded project "Advanced_SAR" was started with the main objective to develop novel forest resources mapping methods based on the fusion of satellite based 3D measurements and in-situ field measurements of forests. During the summer 2014, an extensive field surveying campaign was carried out in the Evo test site, Southern Finland. Forest inventory attributes of mean tree height, basal area, mean stem diameter, stem volume, and biomass, were determined for 91 test plots having the size of 32 by 32 meters (1024 m2). Simultaneously, a comprehensive set of satellite and airborne data was collected. Satellite data also included a set of TanDEM-X (TDX) and TerraSAR-X (TSX) X-band synthetic aperture radar (SAR) images, suitable for interferometric and stereo-radargrammetric processing to extract 3D elevation data representing the forest canopy. In the present study, we compared the accuracy of TDX InSAR and TSX stereo-radargrammetric derived 3D metrics in forest inventory attribute prediction. First, 3D data were extracted from TDX and TSX images. Then, 3D data were processed as elevations above the ground surface (forest canopy height values) using an accurate Digital Terrain Model (DTM) based on airborne laser scanning survey. Finally, 3D metrics were calculated from the canopy height values for each test plot and the 3D metrics were compared with the field reference data. The Random Forest method was used in the forest inventory attributes prediction. Based on the results InSAR showed slightly better

  16. Depth map coding using residual segmentation for 3D video system

    NASA Astrophysics Data System (ADS)

    Lee, Cheon; Ho, Yo-Sung

    2013-06-01

    Advanced 3D video systems employ multi-view video-plus-depth data to support the free-viewpoint navigation and comfortable 3D viewing; thus efficient depth map coding becomes an important issue. Unlike the color image, the depth map has a property that depth values of the inner part of an object are monotonic, but those of object boundaries change abruptly. Therefore, residual data generated by prediction errors around object boundaries consume many bits in depth map coding. Representing them with segment data can be better than the use of the conventional transformation around the boundary regions. In this paper, we propose an efficient depth map coding method using a residual segmentation instead of using transformation. The proposed residual segmentation divides residual data into two regions with a segment map and two mean values. If the encoder selects the proposed method in terms of rates, two quantized mean values and an index of the segment map are transmitted. Simulation results show significant gains of up to 10 dB compared to the state-of-the-art coders, such as JPEG2000 and H.264/AVC. [Figure not available: see fulltext.

  17. SU-F-BRF-08: Conformal Mapping-Based 3D Surface Matching and Registration

    SciTech Connect

    Song, Y; Zeng, W; Gu, X; Liu, C

    2014-06-15

    Purpose: Recently, non-rigid 3D surface matching and registration has been used extensively in engineering and medicine. However, matching 3D surfaces undergoing non-rigid deformation accurately is still a challenging mathematical problem. In this study, we present a novel algorithm to address this issue by introducing intrinsic symmetry to the registration Methods: Our computational algorithm for symmetric conformal mapping is divided into three major steps: 1) Finding the symmetric plane; 2) Finding feature points; and 3) Performing cross registration. The key strategy is to preserve the symmetry during the conformal mapping, such that the image on the parameter domain is symmetric and the area distortion factor on the parameter image is also symmetric. Several novel algorithms were developed using different conformal geometric tools. One was based on solving Riemann-Cauchy equation and the other one employed curvature flow Results: Our algorithm was implemented using generic C++ on Windows XP and used conjugate gradient search optimization for acceleration. The human face 3D surface images were acquired using a high speed 3D scanner based on the phase-shifting method. The scanning speed was 30 frames/sec. The image resolution for each frame was 640 × 480. For 3D human face surfaces with different expressions, postures, and boundaries, our algorithms were able to produce consistent result on the texture pattern on the overlapping region Conclusion: We proposed a novel algorithm to improve the robustness of conformal geometric methods by incorporating the symmetric information into the mapping process. To objectively evaluate its performance, we compared it with most existing techniques. Experimental results indicated that our method outperformed all the others in terms of robustness. The technique has a great potential in real-time patient monitoring and tracking in image-guided radiation therapy.

  18. Generation of 3-D surface maps in waste storage silos using a structured light source

    NASA Technical Reports Server (NTRS)

    Burks, B. L.; Rowe, J. C.; Dinkins, M. A.; Christensen, B.; Selleck, C.; Jacoboski, D.; Markus, R.

    1992-01-01

    Surface contours inside the large waste storage tanks typical of the Department of Energy (DOE) complex are, in general, highly irregular. In addition to pipes and other pieces of equipment in the tanks, the surfaces may have features such as mounds, fissures, crystalline structures, and mixed solid and liquid forms. Prior to remediation activities, it will be necessary to characterize the waste to determine the most effective remediation approaches. Surface contour data will be required both prior to and during remediation. The use is described of a structured light source to generate 3-D surface contour maps of the interior of waste storage silos at the Feed Materials Production Center at Fernald, OH. The landscape inside these large waste storage tanks bears a strong resemblance to some of the landscapes that might be encountered during lunar or planetary exploration. Hence, these terrestrial 3-D mapping techniques may be directly applicable to extraterrestrial exploration. In further development, it will be demonstrated that these 3-D data can be used for robotic task planning just as 3-D surface contour data of a satellite could be used to plan maintenance tasks for a space-based servicing robot.

  19. VizieR Online Data Catalog: 3D interstellar extinct. map within nearest kpc (Gontcharov, 2012)

    NASA Astrophysics Data System (ADS)

    Gontcharov, G. A.

    2016-07-01

    The product of the previously constructed 3D maps of stellar reddening (2010AstL...36..584G) and Rv variations (2012AstL...38...12G) has allowed us to produce a 3D interstellar extinction map within the nearest kiloparsec from the Sun with a spatial resolution of 100pc and an accuracy of 0.2m. This map is compared with the 2D reddening map by Schlegel et al. (1998ApJ...500..525S), the 3D extinction map at high latitudes by Jones et al. (2011AJ....142...44J), and the analytical 3D extinction models by Arenou et al. (1992A&A...258..104A) and Gontcharov (2009AstL...35..780G). In all cases, we have found good agreement and show that there are no systematic errors in the new map everywhere except the direction toward the Galactic center. We have found that the map by Schlegel et al. (1998ApJ...500..525S) reaches saturation near the Galactic equator at E(B-V)>0.8m, has a zero-point error and systematic errors gradually increasing with reddening, and among the analytical models those that take into account the extinction in the Gould Belt are more accurate. Our extinction map shows that it is determined by reddening variations at low latitudes and Rv variations at high ones. This naturally explains the contradictory data on the correlation or anticorrelation between reddening and Rv available in the literature. There is a correlation in a thin layer near the Galactic equator, because both reddening and Rv here increase toward the Galactic center. There is an anticorrelation outside this layer, because higher values of Rv correspond to lower reddening at high and middle latitudes. Systematic differences in sizes and other properties of the dust grains in different parts of the Galaxy manifest themselves in this way. The largest structures within the nearest kiloparsec, including the Local Bubble, the Gould Belt, the Great Tunnel, the Scorpius, Perseus, Orion, and other complexes, have manifested themselves in the constructed map. (1 data file).

  20. Web GIS in practice VII: stereoscopic 3-D solutions for online maps and virtual globes

    PubMed Central

    Boulos, Maged N Kamel; Robinson, Larry R

    2009-01-01

    Because our pupils are about 6.5 cm apart, each eye views a scene from a different angle and sends a unique image to the visual cortex, which then merges the images from both eyes into a single picture. The slight difference between the right and left images allows the brain to properly perceive the 'third dimension' or depth in a scene (stereopsis). However, when a person views a conventional 2-D (two-dimensional) image representation of a 3-D (three-dimensional) scene on a conventional computer screen, each eye receives essentially the same information. Depth in such cases can only be approximately inferred from visual clues in the image, such as perspective, as only one image is offered to both eyes. The goal of stereoscopic 3-D displays is to project a slightly different image into each eye to achieve a much truer and realistic perception of depth, of different scene planes, and of object relief. This paper presents a brief review of a number of stereoscopic 3-D hardware and software solutions for creating and displaying online maps and virtual globes (such as Google Earth) in "true 3D", with costs ranging from almost free to multi-thousand pounds sterling. A practical account is also given of the experience of the USGS BRD UMESC (United States Geological Survey's Biological Resources Division, Upper Midwest Environmental Sciences Center) in setting up a low-cost, full-colour stereoscopic 3-D system. PMID:19849837

  1. 3D Magnetic Induction Maps of Nanoscale Materials Revealed by Electron Holographic Tomography

    PubMed Central

    2015-01-01

    The investigation of three-dimensional (3D) ferromagnetic nanoscale materials constitutes one of the key research areas of the current magnetism roadmap and carries great potential to impact areas such as data storage, sensing, and biomagnetism. The properties of such nanostructures are closely connected with their 3D magnetic nanostructure, making their determination highly valuable. Up to now, quantitative 3D maps providing both the internal magnetic and electric configuration of the same specimen with high spatial resolution are missing. Here, we demonstrate the quantitative 3D reconstruction of the dominant axial component of the magnetic induction and electrostatic potential within a cobalt nanowire (NW) of 100 nm in diameter with spatial resolution below 10 nm by applying electron holographic tomography. The tomogram was obtained using a dedicated TEM sample holder for acquisition, in combination with advanced alignment and tomographic reconstruction routines. The powerful approach presented here is widely applicable to a broad range of 3D magnetic nanostructures and may trigger the progress of novel spintronic nonplanar nanodevices. PMID:27182110

  2. Web GIS in practice VII: stereoscopic 3-D solutions for online maps and virtual globes

    USGS Publications Warehouse

    Boulos, Maged N.K.; Robinson, Larry R.

    2009-01-01

    Because our pupils are about 6.5 cm apart, each eye views a scene from a different angle and sends a unique image to the visual cortex, which then merges the images from both eyes into a single picture. The slight difference between the right and left images allows the brain to properly perceive the 'third dimension' or depth in a scene (stereopsis). However, when a person views a conventional 2-D (two-dimensional) image representation of a 3-D (three-dimensional) scene on a conventional computer screen, each eye receives essentially the same information. Depth in such cases can only be approximately inferred from visual clues in the image, such as perspective, as only one image is offered to both eyes. The goal of stereoscopic 3-D displays is to project a slightly different image into each eye to achieve a much truer and realistic perception of depth, of different scene planes, and of object relief. This paper presents a brief review of a number of stereoscopic 3-D hardware and software solutions for creating and displaying online maps and virtual globes (such as Google Earth) in "true 3D", with costs ranging from almost free to multi-thousand pounds sterling. A practical account is also given of the experience of the USGS BRD UMESC (United States Geological Survey's Biological Resources Division, Upper Midwest Environmental Sciences Center) in setting up a low-cost, full-colour stereoscopic 3-D system.

  3. Web GIS in practice VII: stereoscopic 3-D solutions for online maps and virtual globes.

    PubMed

    Boulos, Maged N Kamel; Robinson, Larry R

    2009-10-22

    Because our pupils are about 6.5 cm apart, each eye views a scene from a different angle and sends a unique image to the visual cortex, which then merges the images from both eyes into a single picture. The slight difference between the right and left images allows the brain to properly perceive the 'third dimension' or depth in a scene (stereopsis). However, when a person views a conventional 2-D (two-dimensional) image representation of a 3-D (three-dimensional) scene on a conventional computer screen, each eye receives essentially the same information. Depth in such cases can only be approximately inferred from visual clues in the image, such as perspective, as only one image is offered to both eyes. The goal of stereoscopic 3-D displays is to project a slightly different image into each eye to achieve a much truer and realistic perception of depth, of different scene planes, and of object relief. This paper presents a brief review of a number of stereoscopic 3-D hardware and software solutions for creating and displaying online maps and virtual globes (such as Google Earth) in "true 3D", with costs ranging from almost free to multi-thousand pounds sterling. A practical account is also given of the experience of the USGS BRD UMESC (United States Geological Survey's Biological Resources Division, Upper Midwest Environmental Sciences Center) in setting up a low-cost, full-colour stereoscopic 3-D system.

  4. 3D Mapping of Glacially-Sculpted Bedrock in Central Park

    NASA Astrophysics Data System (ADS)

    Laderman, L.; Stark, C. P.; Creyts, T. T.

    2014-12-01

    The movement of glaciers and ice sheets through sliding over bedrock depends on the configuration of the subglacial hydrological system. Over time, the glacier erodes the bedrock, which in turn changes water drainage pathways, the overall interaction with the ice, and potentially sliding rates. Drainage can take many forms. At the largest scale, subglacial lakes tens of kilometers in length store water, but the individual pathways are often on the order of meters or smaller. Studies at such a fine scale are only possible by looking at deglaciated beds to infer water drainage. 3D mapping can resolve centimeter scale features and inform studies of the processes that created them. In this survey, Agisoft Photoscan's structure from motion algorithm is used to create a map of Umpire Rock in New York's Central Park from digital photographs. Over 3300 photographs are taken at a separation of roughly half a meter to cover the 1000 square meter survey area. The surface is imaged in separate sections and the resulting point clouds are each aligned with a central section using Photoscan's Align Chunks tool. This process allows additional areas to easily be added to the 3D map. The scale of the final model is accurate to 1mm across the survey area and 3D meshes with a surface resolution of up to 5mm can be created. The distribution of striation directions and sizes on surfaces across the outcrop gives the overall flow direction of the ice and, more locally, illustrates how ice deforms around bedrock features. In addition to striations, we identify cavities and subtle drainage features that are oblique to ice flow. This study demonstrates the relative ease of 3D mapping bedrock outcrops from digital photographs, and indicates the utility of applying this process to more recently deglaciated areas.

  5. Low Cost and Efficient 3d Indoor Mapping Using Multiple Consumer Rgb-D Cameras

    NASA Astrophysics Data System (ADS)

    Chen, C.; Yang, B. S.; Song, S.

    2016-06-01

    Driven by the miniaturization, lightweight of positioning and remote sensing sensors as well as the urgent needs for fusing indoor and outdoor maps for next generation navigation, 3D indoor mapping from mobile scanning is a hot research and application topic. The point clouds with auxiliary data such as colour, infrared images derived from 3D indoor mobile mapping suite can be used in a variety of novel applications, including indoor scene visualization, automated floorplan generation, gaming, reverse engineering, navigation, simulation and etc. State-of-the-art 3D indoor mapping systems equipped with multiple laser scanners product accurate point clouds of building interiors containing billions of points. However, these laser scanner based systems are mostly expensive and not portable. Low cost consumer RGB-D Cameras provides an alternative way to solve the core challenge of indoor mapping that is capturing detailed underlying geometry of the building interiors. Nevertheless, RGB-D Cameras have a very limited field of view resulting in low efficiency in the data collecting stage and incomplete dataset that missing major building structures (e.g. ceilings, walls). Endeavour to collect a complete scene without data blanks using single RGB-D Camera is not technic sound because of the large amount of human labour and position parameters need to be solved. To find an efficient and low cost way to solve the 3D indoor mapping, in this paper, we present an indoor mapping suite prototype that is built upon a novel calibration method which calibrates internal parameters and external parameters of multiple RGB-D Cameras. Three Kinect sensors are mounted on a rig with different view direction to form a large field of view. The calibration procedure is three folds: 1, the internal parameters of the colour and infrared camera inside each Kinect are calibrated using a chess board pattern, respectively; 2, the external parameters between the colour and infrared camera inside each

  6. Large-scale Inference Problems in Astronomy: Building a 3D Galactic Dust Map

    NASA Astrophysics Data System (ADS)

    Finkbeiner, Douglas

    2016-03-01

    The term ''Big Data'' has become trite, as modern technology has made data sets of terabytes or even petabytes easy to store. Such data sets provide a sandbox in which to develop new statistical inference techniques that can extract interesting results from increasingly rich (and large) databases. I will give an example from my work on mapping the interstellar dust of the Milky Way. 2D emission-based maps have been used for decades to estimate the reddening and emission from interstellar dust, with applications from CMB foregrounds to surveys of large-scale structure. For studies within the Milky Way, however, the third dimension is required. I will present our work on a 3D dust map based on Pan-STARRS1 and 2MASS over 3/4 of the sky (http://arxiv.org/abs/1507.01005), assess its usefulness relative to other dust maps, and discuss future work. Supported by the NSF.

  7. Digital mono- and 3D stereo-photogrammetry for geological and geomorphological mapping

    NASA Astrophysics Data System (ADS)

    Scapozza, Cristian; Schenker, Filippo Luca; Castelletti, Claudio; Bozzini, Claudio; Ambrosi, Christian

    2016-04-01

    The generalization of application of digital tools for managing, mapping and updating geological data have become widely accepted in the last decennia. Despite the increasing quality and availability of digital topographical maps, orthorectified aerial photographs (orthophotos) and high resolution (5 up to 0.5 m) Digital Elevation Models (DEMs), a correct recognition of the kind, the nature and the boundaries of geological formations and geomophological landforms, unconsolidated sedimentary deposits or slope instabilities is often very difficult on conventional two-dimensional (2D) products, in particular in steep zones (rock walls and talus slopes), under the forest cover, for a very complex topography and in deeply urbanised zones. In many cases, photo-interpretative maps drawn only by 2D data sets must be improved by field verifications or, at least, by field oblique photographs. This is logical, because our natural perception of the real world is three-dimensional (3D), which is partially disabled by the application of 2D visualization techniques. Here we present some examples of application of digital mapping based on a 3D visualization (for aerial and satellite images photo-interpretation) or on a terrestrial perception by digital mono-photogrammetry (for oblique photographs). The 3D digital mapping was performed thanks to an extension of the software ESRI® ArcGIS™ called ArcGDS™. This methodology was also applied on historical aerial photographs (normally analysed by optical stereo-photogrammetry), which were digitized by scanning and then oriented and aero-triangulated thanks to the ArcGDS™ software, allowing the 3D visualisation and the mapping in a GIS environment (Ambrosi and Scapozza, 2015). The mono-photogrammetry (or monoplotting) is the technique of photogrammetrical georeferentiation of single oblique unrectified photographs, which are related to a DEM. In other words, the monoplotting allows relating each pixel of the photograph to the

  8. Developing a 3D constrained variational analysis method to obtain accurate gridded atmospheric vertical velocity and horizontal advections

    NASA Astrophysics Data System (ADS)

    Tang, S.; Zhang, M.

    2013-12-01

    Based on the constrained variational analysis (CVA) algorithm developed by Zhang and Lin (1997), a 3-dimensional (3D) version of CVA is developed. The new algorithm used gridded surface and TOA observations as constraints to adjust atmospheric state variables in each grid point to satisfy column-integrated mass, moisture and static energy conservation. From the process of adjustment a set of high-quality 3D large-scale forcing data (vertical velocity and horizontal advections) can be derived to drive Single-Column models (SCM), Cloud-Resolving Models (CRM) and Large-Eddy Simulations (LES) to evaluate and improve parameterizations. Since the 3D CVA can adjust gridded state variables from any data source with observed precipitation, radiation and surface fluxes, it also gives a potential possibility to use this algorithm in data assimilation system to assimilate precipitation and radiation data.

  9. Segment-interaction in sprint start: Analysis of 3D angular velocity and kinetic energy in elite sprinters.

    PubMed

    Slawinski, J; Bonnefoy, A; Ontanon, G; Leveque, J M; Miller, C; Riquet, A; Chèze, L; Dumas, R

    2010-05-28

    The aim of the present study was to measure during a sprint start the joint angular velocity and the kinetic energy of the different segments in elite sprinters. This was performed using a 3D kinematic analysis of the whole body. Eight elite sprinters (10.30+/-0.14s 100 m time), equipped with 63 passive reflective markers, realised four maximal 10 m sprints start on an indoor track. An opto-electronic Motion Analysis system consisting of 12 digital cameras (250 Hz) was used to collect the 3D marker trajectories. During the pushing phase on the blocks, the 3D angular velocity vector and its norm were calculated for each joint. The kinetic energy of 16 segments of the lower and upper limbs and of the total body was calculated. The 3D kinematic analysis of the whole body demonstrated that joints such as shoulders, thoracic or hips did not reach their maximal angular velocity with a movement of flexion-extension, but with a combination of flexion-extension, abduction-adduction and internal-external rotation. The maximal kinetic energy of the total body was reached before clearing block (respectively, 537+/-59.3 J vs. 514.9+/-66.0 J; p< or =0.01). These results suggested that a better synchronization between the upper and lower limbs could increase the efficiency of pushing phase on the blocks. Besides, to understand low interindividual variances in the sprint start performance in elite athletes, a 3D complete body kinematic analysis shall be used.

  10. Vertical profiles of the 3-D wind velocity retrieved from multiple wind lidars performing triple range-height-indicator scans

    DOE PAGES

    Debnath, Mithu; Iungo, G. Valerio; Ashton, Ryan; ...

    2017-02-06

    Vertical profiles of 3-D wind velocity are retrieved from triple range-height-indicator (RHI) scans performed with multiple simultaneous scanning Doppler wind lidars. This test is part of the eXperimental Planetary boundary layer Instrumentation Assessment (XPIA) campaign carried out at the Boulder Atmospheric Observatory. The three wind velocity components are retrieved and then compared with the data acquired through various profiling wind lidars and high-frequency wind data obtained from sonic anemometers installed on a 300 m meteorological tower. The results show that the magnitude of the horizontal wind velocity and the wind direction obtained from the triple RHI scans are generally retrieved with goodmore » accuracy. However, poor accuracy is obtained for the evaluation of the vertical velocity, which is mainly due to its typically smaller magnitude and to the error propagation connected with the data retrieval procedure and accuracy in the experimental setup.« less

  11. Vertical profiles of the 3-D wind velocity retrieved from multiple wind lidars performing triple range-height-indicator scans

    SciTech Connect

    Debnath, Mithu; Iungo, G. Valerio; Ashton, Ryan; Brewer, W. Alan; Choukulkar, Aditya; Delgado, Ruben; Lundquist, Julie K.; Shaw, William J.; Wilczak, James M.; Wolfe, Daniel

    2017-01-01

    Vertical profiles of 3-D wind velocity are retrieved from triple range-height-indicator (RHI) scans performed with multiple simultaneous scanning Doppler wind lidars. This test is part of the eXperimental Planetary boundary layer Instrumentation Assessment (XPIA) campaign carried out at the Boulder Atmospheric Observatory. The three wind velocity components are retrieved and then compared with the data acquired through various profiling wind lidars and high-frequency wind data obtained from sonic anemometers installed on a 300 m meteorological tower. The results show that the magnitude of the horizontal wind velocity and the wind direction obtained from the triple RHI scans are generally retrieved with good accuracy. However, poor accuracy is obtained for the evaluation of the vertical velocity, which is mainly due to its typically smaller magnitude and to the error propagation connected with the data retrieval procedure and accuracy in the experimental setup.

  12. Vertical profiles of the 3-D wind velocity retrieved from multiple wind lidars performing triple range-height-indicator scans

    NASA Astrophysics Data System (ADS)

    Debnath, Mithu; Valerio Iungo, G.; Ashton, Ryan; Brewer, W. Alan; Choukulkar, Aditya; Delgado, Ruben; Lundquist, Julie K.; Shaw, William J.; Wilczak, James M.; Wolfe, Daniel

    2017-02-01

    Vertical profiles of 3-D wind velocity are retrieved from triple range-height-indicator (RHI) scans performed with multiple simultaneous scanning Doppler wind lidars. This test is part of the eXperimental Planetary boundary layer Instrumentation Assessment (XPIA) campaign carried out at the Boulder Atmospheric Observatory. The three wind velocity components are retrieved and then compared with the data acquired through various profiling wind lidars and high-frequency wind data obtained from sonic anemometers installed on a 300 m meteorological tower. The results show that the magnitude of the horizontal wind velocity and the wind direction obtained from the triple RHI scans are generally retrieved with good accuracy. However, poor accuracy is obtained for the evaluation of the vertical velocity, which is mainly due to its typically smaller magnitude and to the error propagation connected with the data retrieval procedure and accuracy in the experimental setup.

  13. On the critical one-component velocity regularity criteria to 3-D incompressible MHD system

    NASA Astrophysics Data System (ADS)

    Liu, Yanlin

    2016-05-01

    Let (u , b) be a smooth enough solution of 3-D incompressible MHD system. We prove that if (u , b) blows up at a finite time T*, then for any p ∈ ] 4 , ∞ [, there holds ∫0T* (‖u3(t‧) ‖ H ˙ 1/2 +2/p p + ‖b(t‧) ‖ H ˙ 1/2 +2/p p) dt‧ = ∞. We remark that all these quantities are in the critical regularity of the MHD system.

  14. Processing of noised residual stress phase maps by using a 3D phase unwrapping algorithm

    NASA Astrophysics Data System (ADS)

    Viotti, Matias R.; Fantin, Analucia V.; Albertazzi, Armando; Willemann, Daniel P.

    2013-07-01

    The measurement of residual stress by using digital speckle pattern interferometry (DSPI) combined with the hole drilling technique is a valuable and fast tool for integrity evaluation of civil structures and mechanical parts. However, in some cases, measured phase maps are badly corrupted by noise which makes phase unwrapping a difficult and unsuccessful task. By following recommendations given by the ASTM E837 standard, 20 consecutive hole steps should be performed for the measurement of non-uniform stresses. As a consequence, 20 difference phase maps along the hole depth will be available for the DSPI technique. An adaptive phase unwrapping algorithm could be used in order to unwrap images following paths localized along well modulated pixels and performing two dimensional phase unwrapping (following paths inside a difference phase map corresponding to a hole step) or 3D phase unwrapping (similar to a temporal phase unwrapping following paths located at well-modulated pixels in a previous or a subsequent hole image). Non-corrupted and corrupted hole-drilling tests were processed with a traditional phase unwrapping algorithm as well as with the proposed 3D approach. Comparisons between unwrapped phase maps and simulated ones have shown that the proposed method gave results with best accordance than 2D results.

  15. 3D Velocity and Density Model of the Los Angeles Basin and Spectral Element Method Earthquake Simulations

    NASA Astrophysics Data System (ADS)

    Suess, P.; Shaw, J. H.; Komatitsch, D.; Tromp, J.

    2001-12-01

    We present a 3D velocity model and a 3D density model of the LA basin. The LA basin velocity model was constructed using sonic log and stacking velocity information, provided by oil industry sources and not previously incorporated into southern California velocity models. The density model is based upon a new database of approximately 300 oil industry density logs from across the Los Angeles basin. These logs use gamma ray emissions to determine formation density at samples of about one meter. We have developed an empirical relation between sonic velocity and density by comparing data from approximately 30 wells in which we have both sonic and density logs. For the remaining wells, we have derived relationships between depth and density, and characterized this relationship for the three main stratigraphic sub-divisions of the SCEC Phase 2 model (Quaternary to base Pico Fm., top Repetto Fm. to top Mohnian, and top Mohnian to basement). The density-depth and density-velocity relations will provide independent rules that can be employed to define density and velocity structure in areas where data does not exist, or in other areas with similar lithology to the Los Angeles basin. We use a spectral element method (SEM) for simulation of seismic wave propagation which is currently being implemented on a 156-node Pentium PC cluster at Cal Tech. Preliminary work shows that SEM results using a 1D velocity model for southern California compare very well to discrete-wavenumber results. Both the density structure and velocity structure must be defined in a 3D model for its use in simulations of seismic wave propagation with a spectral element method, to predict the distribution of hazardous ground shaking during large events. Previous work has typically used density values which were predicted by the sonic velocity values; use of our measured density values should provide more accurate ground shaking predictions, and comparison to previous results will provide a useful

  16. From the Alpine region to the Central Apennines (Italy): 3d upper lithospheric P-velocity model with controlled source seismology data

    NASA Astrophysics Data System (ADS)

    di Stefano, R.; Tondi, R.; de Luca, L.; Lippitsch, R.; Sandoval, S.; Kissling, E.

    2003-04-01

    The complex lithosphere structure of the Italian region leads to difficulties in uniquely interpreting the results obtained with geophysical investigation methods. Relating to P waves velocity models, the geometry of the moho is the main first order structure influencing the interpretation of controlled source seismology (CSS) profile data and results from local earthquake tomography (LET). Moreover, the crustal structures complexities, though poorly resolved by teleseismic tomography, strongly distort teleseismic wave fronts and thus influence teleseismic traveltimes. In 1996 a method was developed by F. Waldhauser to determine the 3D topography and lateral continuity of seismic interfaces using 2D-derived controlled-source seismic reflector data. This method has been successfully applied to retrieve the moho geometry in the complex Alpine region with the aim to obtain the simplest possible 3D structure consistent with all reflector data and error estimates. For the Alpine region a 3D crustal P-wave velocity model has been thus developed from comparative use of published information from active and passive sources surveys. Here we present the extension of this map to the Italian peninsula to include Northern and Central Apennines. Information from the CROP project and from other CSS experiments performed in the past 40 years, both on land and offshore, has been included to cover the whole area. The first order features of Adriatic and Tyrrhenian moho have been recovered and a Vp crustal velocity model has been produced. For the Northern Apennines we compare the newly derived crustal model with the 3D structure of the crust obtained by the inversion of P-wave first arrivals picked on the CSS data, and of gravity data collected on land and off-shore (see Tondi et al., session SM3).

  17. Validation of 3D Seismic Velocity Models Using the Spectral Element Method

    NASA Astrophysics Data System (ADS)

    Maceira, M.; Larmat, C. S.; Porritt, R. W.; Higdon, D.; Allen, R. M.

    2012-12-01

    For over a decade now, many research institutions have been focusing on addressing the Earth's 3D heterogeneities and complexities by improving tomographic methods. Utilizing dense array datasets, these efforts have led to unprecedented 3D seismic images, but little is done in terms of model validation or to provide any absolute assessment of model uncertainty. Furthermore, the question of "How good is a 3D geophysical model at representing the Earth's true physics? " remains largely not addressed in a time when 3D Earth models are used for societal and energy security. In the last few years, new horizons have opened up in earth structure imaging, with the advent of new numerical and mathematical methods in computational seismology and statistical sciences. We use these methods to tackle the question of model validation taking advantage of unique and extensive High Performance Computing resources available at Los Alamos National Laboratory. We present results from a study focused on validating 3D models for the Western USA generated using both ray-theoretical and finite-frequency approximations. In this manner we do not validate just the model but also the imaging technique. For this test case, we utilize the Dynamic North America (DNA) model family of UC Berkeley, as they are readily available in both formulations. We evaluate model performances by comparing observed and synthetic seismograms generated using the Spectral Element Method. Results show that both, finite-frequency and ray-theoretical DNA09 models, predict the observations well. Waveform cross-correlation coefficients show a difference in performance between models obtained with the finite-frequency or ray-theory limited to smallest periods (<15s), with no perceptible difference at longer periods (50-200s). At those shortest periods, and based on statistical analyses on S-wave phase delay measurements, finite-frequency shows an improvement over ray theory. We are also investigating the breakdown of ray

  18. 3D mapping of somatotopic reorganization with small animal functional MRI

    PubMed Central

    Yu, Xin; Wang, Shumin; Chen, Der-Yow; Dodd, Stephen; Goloshevsky, Artem; Koretsky, Alan P.

    2009-01-01

    There are few in vivo noninvasive methods to study neuroplasticity in animal brains. Functional MRI (fMRI) has been developed for animal brain mapping, but few fMRI studies have analyzed functional alteration due to plasticity in animal models. One major limitation is that fMRI maps are characterized by statistical parametric mapping making the apparent boundary dependent on the statistical threshold used. Here, we developed a method to characterize the location of center-of-mass in fMRI maps that is shown not to be sensitive to statistical threshold. Utilizing centers-of-mass as anchor points to fit the spatial distribution of the BOLD response enabled quantitative group analysis of altered boundaries of functional somatosensory maps. This approach was used to study cortical reorganization in the rat primary somatosensory cortex (S1) after sensory deprivation to the barrel cortex by follicle ablation (F.A.). FMRI demonstrated an enlarged nose S1 representation in the 3D somatotopic functional maps. This result clearly demonstrates that fMRI enables the spatial mapping of functional changes that can characterize multiple regions of S1 cortex and still be sensitive to changes due to plasticity. PMID:19770051

  19. Enhanced Rgb-D Mapping Method for Detailed 3d Modeling of Large Indoor Environments

    NASA Astrophysics Data System (ADS)

    Tang, Shengjun; Zhu, Qing; Chen, Wu; Darwish, Walid; Wu, Bo; Hu, Han; Chen, Min

    2016-06-01

    RGB-D sensors are novel sensing systems that capture RGB images along with pixel-wise depth information. Although they are widely used in various applications, RGB-D sensors have significant drawbacks with respect to 3D dense mapping of indoor environments. First, they only allow a measurement range with a limited distance (e.g., within 3 m) and a limited field of view. Second, the error of the depth measurement increases with increasing distance to the sensor. In this paper, we propose an enhanced RGB-D mapping method for detailed 3D modeling of large indoor environments by combining RGB image-based modeling and depth-based modeling. The scale ambiguity problem during the pose estimation with RGB image sequences can be resolved by integrating the information from the depth and visual information provided by the proposed system. A robust rigid-transformation recovery method is developed to register the RGB image-based and depth-based 3D models together. The proposed method is examined with two datasets collected in indoor environments for which the experimental results demonstrate the feasibility and robustness of the proposed method

  20. Development of Mobile Mapping System for 3D Road Asset Inventory

    PubMed Central

    Sairam, Nivedita; Nagarajan, Sudhagar; Ornitz, Scott

    2016-01-01

    Asset Management is an important component of an infrastructure project. A significant cost is involved in maintaining and updating the asset information. Data collection is the most time-consuming task in the development of an asset management system. In order to reduce the time and cost involved in data collection, this paper proposes a low cost Mobile Mapping System using an equipped laser scanner and cameras. First, the feasibility of low cost sensors for 3D asset inventory is discussed by deriving appropriate sensor models. Then, through calibration procedures, respective alignments of the laser scanner, cameras, Inertial Measurement Unit and GPS (Global Positioning System) antenna are determined. The efficiency of this Mobile Mapping System is experimented by mounting it on a truck and golf cart. By using derived sensor models, geo-referenced images and 3D point clouds are derived. After validating the quality of the derived data, the paper provides a framework to extract road assets both automatically and manually using techniques implementing RANSAC plane fitting and edge extraction algorithms. Then the scope of such extraction techniques along with a sample GIS (Geographic Information System) database structure for unified 3D asset inventory are discussed. PMID:26985897

  1. Development of Mobile Mapping System for 3D Road Asset Inventory.

    PubMed

    Sairam, Nivedita; Nagarajan, Sudhagar; Ornitz, Scott

    2016-03-12

    Asset Management is an important component of an infrastructure project. A significant cost is involved in maintaining and updating the asset information. Data collection is the most time-consuming task in the development of an asset management system. In order to reduce the time and cost involved in data collection, this paper proposes a low cost Mobile Mapping System using an equipped laser scanner and cameras. First, the feasibility of low cost sensors for 3D asset inventory is discussed by deriving appropriate sensor models. Then, through calibration procedures, respective alignments of the laser scanner, cameras, Inertial Measurement Unit and GPS (Global Positioning System) antenna are determined. The efficiency of this Mobile Mapping System is experimented by mounting it on a truck and golf cart. By using derived sensor models, geo-referenced images and 3D point clouds are derived. After validating the quality of the derived data, the paper provides a framework to extract road assets both automatically and manually using techniques implementing RANSAC plane fitting and edge extraction algorithms. Then the scope of such extraction techniques along with a sample GIS (Geographic Information System) database structure for unified 3D asset inventory are discussed.

  2. Representation and coding of large-scale 3D dynamic maps

    NASA Astrophysics Data System (ADS)

    Cohen, Robert A.; Tian, Dong; Krivokuća, Maja; Sugimoto, Kazuo; Vetro, Anthony; Wakimoto, Koji; Sekiguchi, Shunichi

    2016-09-01

    combined with depth and color measurements of the surrounding environment. Localization could be achieved with GPS, inertial measurement units (IMU), cameras, or combinations of these and other devices, while the depth measurements could be achieved with time-of-flight, radar or laser scanning systems. The resulting 3D maps, which are composed of 3D point clouds with various attributes, could be used for a variety of applications, including finding your way around indoor spaces, navigating vehicles around a city, space planning, topographical surveying or public surveying of infrastructure and roads, augmented reality, immersive online experiences, and much more. This paper discusses application requirements related to the representation and coding of large-scale 3D dynamic maps. In particular, we address requirements related to different types of acquisition environments, scalability in terms of progressive transmission and efficiently rendering different levels of details, as well as key attributes to be included in the representation. Additionally, an overview of recently developed coding techniques is presented, including an assessment of current performance. Finally, technical challenges and needs for future standardization are discussed.

  3. Multislice diffusion mapping for 3-D evolution of cerebral ischemia in a rat stroke model.

    PubMed

    Reith, W; Hasegawa, Y; Latour, L L; Dardzinski, B J; Sotak, C H; Fisher, M

    1995-01-01

    Diffusion-weighted magnetic resonance imaging (DWI) can quantitatively demonstrate cerebral ischemia within minutes after the onset of ischemia. The use of a DWI echo-planar multislice technique in this study and the mapping of the apparent diffusion coefficient (ADC) of water, a reliable indicator of ischemic regions, allow for the detection of the three-dimensional (3-D) evolution of ischemia in a rat stroke model. We evaluated 13 time points from 5 to 180 minutes after occlusion of the middle cerebral artery (MCA) and monitored the 3-D spread of ischemia. Within 5 minutes after the onset of ischemia, regions with reduced ADC values occurred. The core of the lesion, with the lowest absolute ADC values, first appeared in the lateral caudoputamen and frontoparietal cortex, then spread to adjacent areas. The volume of ischemic tissue was 224 +/- 48.5 mm3 (mean +/- SEM) after 180 minutes, ranging from 92 to 320 mm3, and this correlated well with the corrected infarct volume at postmortem (194 +/- 23.1 mm3, r = 0.72, p < 0.05). This experiment demonstrated that 3-D multislice diffusion mapping can detect ischemic regions noninvasively 5 minutes after MCA occlusion and follow the development of ischemia. The distribution of changes in absolute ADC values within the ischemic region can be followed over time, giving important information about the evolution of focal ischemia.

  4. Texture mapping 3D models of indoor environments with noisy camera poses

    NASA Astrophysics Data System (ADS)

    Cheng, Peter; Anderson, Michael; He, Stewart; Zakhor, Avideh

    2013-03-01

    Automated 3D modeling of building interiors is used in applications such as virtual reality and environment mapping. Texturing these models allows for photo-realistic visualizations of the data collected by such modeling systems. While data acquisition times for mobile mapping systems are considerably shorter than for static ones, their recovered camera poses often suffer from inaccuracies, resulting in visible discontinuities when successive images are projected onto a surface for texturing. We present a method for texture mapping models of indoor environments that starts by selecting images whose camera poses are well-aligned in two dimensions. We then align images to geometry as well as to each other, producing visually consistent textures even in the presence of inaccurate surface geometry and noisy camera poses. Images are then composited into a final texture mosaic and projected onto surface geometry for visualization. The effectiveness of the proposed method is demonstrated on a number of different indoor environments.

  5. Virtual 3D tumor marking-exact intraoperative coordinate mapping improve post-operative radiotherapy

    PubMed Central

    2011-01-01

    The quality of the interdisciplinary interface in oncological treatment between surgery, pathology and radiotherapy is mainly dependent on reliable anatomical three-dimensional (3D) allocation of specimen and their context sensitive interpretation which defines further treatment protocols. Computer-assisted preoperative planning (CAPP) allows for outlining macroscopical tumor size and margins. A new technique facilitates the 3D virtual marking and mapping of frozen sections and resection margins or important surgical intraoperative information. These data could be stored in DICOM format (Digital Imaging and Communication in Medicine) in terms of augmented reality and transferred to communicate patient's specific tumor information (invasion to vessels and nerves, non-resectable tumor) to oncologists, radiotherapists and pathologists. PMID:22087558

  6. A 3-D shear velocity model of the southern North American and Caribbean plates from ambient noise and earthquake tomography

    NASA Astrophysics Data System (ADS)

    Gaite, B.; Villaseñor, A.; Iglesias, A.; Herraiz, M.; Jiménez-Munt, I.

    2015-02-01

    We use group velocities from earthquake tomography together with group and phase velocities from ambient noise tomography (ANT) of Rayleigh waves to invert for the 3-D shear-wave velocity structure (5-70 km) of the Caribbean (CAR) and southern North American (NAM) plates. The lithospheric model proposed offers a complete image of the crust and uppermost-mantle with imprints of the tectonic evolution. One of the most striking features inferred is the main role of the Ouachita-Marathon-Sonora orogeny front on the crustal seismic structure of the NAM plate. A new imaged feature is the low crustal velocities along the USA-Mexico border. The model also shows a break of the east-west mantle velocity dichotomy of the NAM and CAR plates beneath the Isthmus of the Tehuantepec and the Yucatan Block. High upper-mantle velocities along the Mesoamerican Subduction Zone coincide with inactive volcanic areas while the lowest velocities correspond to active volcanic arcs and thin lithospheric mantle regions.

  7. Estimating 3D positions and velocities of projectiles from monocular views.

    PubMed

    Ribnick, Evan; Atev, Stefan; Papanikolopoulos, Nikolaos P

    2009-05-01

    In this paper, we consider the problem of localizing a projectile in 3D based on its apparent motion in a stationary monocular view. A thorough theoretical analysis is developed, from which we establish the minimum conditions for the existence of a unique solution. The theoretical results obtained have important implications for applications involving projectile motion. A robust, nonlinear optimization-based formulation is proposed, and the use of a local optimization method is justified by detailed examination of the local convexity structure of the cost function. The potential of this approach is validated by experimental results.

  8. 3D mapping of neuronal migration in the embryonic mouse brain with magnetic resonance microimaging.

    PubMed

    Deans, Abby E; Wadghiri, Youssef Zaim; Aristizábal, Orlando; Turnbull, Daniel H

    2015-07-01

    A prominent feature of the developing mammalian brain is the widespread migration of neural progenitor (NP) cells during embryogenesis. A striking example is provided by NP cells born in the ventral forebrain of mid-gestation stage mice, which subsequently migrate long distances to their final positions in the cortex and olfactory bulb. Previous studies have used two-dimensional histological methods, making it difficult to analyze three-dimensional (3D) migration patterns. Unlike histology, magnetic resonance microimaging (micro-MRI) is a non-destructive, quantitative and inherently 3D imaging method for analyzing mouse embryos. To allow mapping of migrating NP cells with micro-MRI, cells were labeled in situ in the medial (MGE) and lateral (LGE) ganglionic eminences, using targeted in utero ultrasound-guided injection of micron-sized particles of iron-oxide (MPIO). Ex vivo micro-MRI and histology were then performed 5-6days after injection, demonstrating that the MPIO had magnetically labeled the migrating NP populations, which enabled 3D visualization and automated segmentation of the labeled cells. This approach was used to analyze the distinct patterns of migration from the MGE and LGE, and to construct rostral-caudal migration maps from each progenitor region. Furthermore, abnormal migratory phenotypes were observed in Nkx2.1(-/-) embryos, most notably a significant increase in cortical neurons derived from the Nkx2.1(-/-) LGE. Taken together, these results demonstrate that MPIO labeling and micro-MRI provide an efficient and powerful approach for analyzing 3D cell migration patterns in the normal and mutant mouse embryonic brain.

  9. Characterizing 3-D flow velocity in evolving pore networks driven by CaCO3 precipitation and dissolution

    NASA Astrophysics Data System (ADS)

    Chojnicki, K. N.; Yoon, H.; Martinez, M. J.

    2015-12-01

    Understanding reactive flow in geomaterials is important for optimizing geologic carbon storage practices, such as using pore space efficiently. Flow paths can be complex in large degrees of geologic heterogeneities across scales. In addition, local heterogeneity can evolve as reactive transport processes alter the pore-scale morphology. For example, dissolved carbon dioxide may react with minerals in fractured rocks, confined aquifers, or faults, resulting in heterogeneous cementation (and/or dissolution) and evolving flow conditions. Both path and flow complexities are important and poorly characterized, making it difficult to determine their evolution with traditional 2-D transport models. Here we characterize the development of 3-D pore-scale flow with an evolving pore configuration due to calcium carbonate (CaCO3) precipitation and dissolution. A simple pattern of a microfluidic pore network is used initially and pore structures will become more complex due to precipitation and dissolution processes. At several stages of precipitation and dissolution, we directly visualize 3-D velocity vectors using micro particle image velocimetry and a laser scanning confocal microscope. Measured 3-D velocity vectors are then compared to 3-D simulated flow fields which will be used to simulate reactive transport. Our findings will highlight the importance of the 3-D flow dynamics and its impact on estimating reactive surface area over time. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000. This material is based upon work supported as part of the Center for Frontiers of Subsurface Energy Security, an Energy Frontier Research Center funded by the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences under Award Number DE-SC0001114.

  10. Mapping cardiac fiber orientations from high-resolution DTI to high-frequency 3D ultrasound

    NASA Astrophysics Data System (ADS)

    Qin, Xulei; Wang, Silun; Shen, Ming; Zhang, Xiaodong; Wagner, Mary B.; Fei, Baowei

    2014-03-01

    The orientation of cardiac fibers affects the anatomical, mechanical, and electrophysiological properties of the heart. Although echocardiography is the most common imaging modality in clinical cardiac examination, it can only provide the cardiac geometry or motion information without cardiac fiber orientations. If the patient's cardiac fiber orientations can be mapped to his/her echocardiography images in clinical examinations, it may provide quantitative measures for diagnosis, personalized modeling, and image-guided cardiac therapies. Therefore, this project addresses the feasibility of mapping personalized cardiac fiber orientations to three-dimensional (3D) ultrasound image volumes. First, the geometry of the heart extracted from the MRI is translated to 3D ultrasound by rigid and deformable registration. Deformation fields between both geometries from MRI and ultrasound are obtained after registration. Three different deformable registration methods were utilized for the MRI-ultrasound registration. Finally, the cardiac fiber orientations imaged by DTI are mapped to ultrasound volumes based on the extracted deformation fields. Moreover, this study also demonstrated the ability to simulate electricity activations during the cardiac resynchronization therapy (CRT) process. The proposed method has been validated in two rat hearts and three canine hearts. After MRI/ultrasound image registration, the Dice similarity scores were more than 90% and the corresponding target errors were less than 0.25 mm. This proposed approach can provide cardiac fiber orientations to ultrasound images and can have a variety of potential applications in cardiac imaging.

  11. Crustal and upper mantle 3D shear wave velocity structure of the High Lava Plains, Oregon, determined from ambient noise tomography

    NASA Astrophysics Data System (ADS)

    Hanson-Hedgecock, S.; Wagner, L.; Fouch, M. J.; James, D. E.

    2011-12-01

    We present the results of inversions for 3D shear velocity structure of the crust and uppermost mantle beneath the High Lava Plains, Oregon using data from ~300 broadband stations of the High Lava Plains seismic experiment and the EarthScope/USArray Transportable Array (TA). The High Lava Plains (HLP) is a WNW progressive silicic volcanism, initiated ~14.5 Ma near the Owyhee Plateau and is currently active at the Newberry caldera. The Yellowstone Snake River Plain (YSRP) volcanic track is temporally contemporaneous with the HLP, but trends to the northeast, parallel to North American plate motion. The cause of volcanism along the HLP is debated and has been variously attributed to Basin and Range extension, back-arc extension, rollback of the subducting Juan de Fuca plate, and an intra-continental hotspot/plume source. Additionally the relationship between the HLP, YSRP, and Columbia River Basalts (CRB), the three major post-17Ma intracontinental volcanic provinces of the Pacific Northwest, is not well understood. The 3D shear velocity structure of the crust and uppermost mantle to ~65km depth is determined from fundamental mode Rayleigh wave ambient noise phase velocity maps at periods up to 40s. The use of ambient noise tomography with the dense station spacing of the combined High Lava Plains seismic experiment and the EarthScope/USArray Transportable Array (TA) datasets allows the shallow structure of the High Lava Plains to be imaged in finer detail than previous ANT studies that focused on the entire western United States. In the crust, low velocities in central Oregon are observed in association with the Brothers Fault Zone, Jordan and Diamond Craters and Steens Mountain regions in addition to the strong low velocity zone associated with the Cascades to the west. To the east of the HLP, low velocities are observed to about 10km depth in the western SRP. In the eastern SRP we observe a shallow veneer of low velocities underlain by a ~10km thick high velocity

  12. On the Quality of Velocity Interpolation Schemes for Marker-In-Cell Methods on 3-D Staggered Grids

    NASA Astrophysics Data System (ADS)

    Kaus, B.; Pusok, A. E.; Popov, A.

    2015-12-01

    The marker-in-cell method is generally considered to be a flexible and robust method to model advection of heterogenous non-diffusive properties (i.e. rock type or composition) in geodynamic problems or incompressible Stokes problems. In this method, Lagrangian points carrying compositional information are advected with the ambient velocity field on an immobile, Eulerian grid. However, velocity interpolation from grid points to marker locations is often performed without preserving the zero divergence of the velocity field at the interpolated locations (i.e. non-conservative). Such interpolation schemes can induce non-physical clustering of markers when strong velocity gradients are present (Jenny et al., 2001) and this may, eventually, result in empty grid cells, a serious numerical violation of the marker-in-cell method. Solutions to this problem include: using larger mesh resolutions and/or marker densities, or repeatedly controlling the marker distribution (i.e. inject/delete), but which does not have an established physical background. To remedy this at low computational costs, Jenny et al. (2001) and Meyer and Jenny (2004) proposed a simple, conservative velocity interpolation (CVI) scheme for 2-D staggered grid, while Wang et al. (2015) extended the formulation to 3-D finite element methods. Here, we follow up with these studies and report on the quality of velocity interpolation methods for 2-D and 3-D staggered grids. We adapt the formulations from both Jenny et al. (2001) and Wang et al. (2015) for use on 3-D staggered grids, where the velocity components have different node locations as compared to finite element, where they share the same node location. We test the different interpolation schemes (CVI and non-CVI) in combination with different advection schemes (Euler, RK2 and RK4) and with/out marker control on Stokes problems with strong velocity gradients, which are discretized using a finite difference method. We show that a conservative formulation

  13. Mapping 3-D functional capillary geometry in rat skeletal muscle in vivo

    PubMed Central

    Milkovich, Stephanie; Goldman, Daniel; Ellis, Christopher G.

    2012-01-01

    We have developed a novel mapping software package to reconstruct microvascular networks in three dimensions (3-D) from in vivo video images for use in blood flow and O2 transport modeling. An intravital optical imaging system was used to collect video sequences of blood flow in microvessels at different depths in the tissue. Functional images of vessels were produced from the video sequences and were processed using automated edge tracking software to yield location and geometry data for construction of the 3-D network. The same video sequences were analyzed for hemodynamic and O2 saturation data from individual capillaries in the network. Simple user-driven commands allowed the connection of vessel segments at bifurcations, and semiautomated registration enabled the tracking of vessels across multiple focal planes and fields of view. The reconstructed networks can be rotated and manipulated in 3-D to verify vessel connections and continuity. Hemodynamic and O2 saturation measurements made in vivo can be indexed to corresponding vessels and visualized using colorized maps of the vascular geometry. Vessels in each reconstruction are saved as text-based files that can be easily imported into flow or O2 transport models with complete geometry, hemodynamic, and O2 transport conditions. The results of digital morphometric analysis of seven microvascular networks showed mean capillary diameters and overall capillary density consistent with previous findings using histology and corrosion cast techniques. The described mapping software is a valuable tool for the quantification of in vivo microvascular geometry, hemodynamics, and oxygenation, thus providing rich data sets for experiment-based computational models. PMID:22140042

  14. Dose distribution and mapping with 3D imaging presentation in intraoral and panoramic examinations

    NASA Astrophysics Data System (ADS)

    Chen, Hsiu-Ling; Huang, Yung-Hui; Wu, Tung-Hsin; Wang, Shih-Yuan; Lee, Jason J. S.

    2011-10-01

    In current medical imaging applications, high quality images not only provide more diagnostic value for anatomic delineation but also offer functional information for treatment direction. However, this approach would potentially subscribe higher radiation dose in dental radiographies, which has been putatively associated with low-birth-weight during pregnancy, which affects the hypothalamus-pituitary-thyroid axis or thereby directly affects the reproductive organs. The aim of this study was to apply the high resolution 3-D image mapping technique to evaluate radiation doses from the following aspects: (1) verifying operating parameters of dental X-ray units, (2) measuring the leakage radiations and (3) mapping dose with 3-D radiographic imaging to evaluate dose distribution in head and neck regions. From the study results, we found that (1) leakage radiation from X-ray units was about 21.31±15.24 mR/h (<100 mR/h), (2) error of actual tube voltage for 60 kVp setting was from 0.2% to 6.5%, with an average of 2.5% (<7%) and (3) the error of exposure time for a 0.5-1.5 s setting was within 0.7-8.5%, with an average of 7.3% (<10%) error as well. Our 3-D dose mapping demonstrated that dose values were relatively lower in soft tissues and higher in bone surfaces compared with other investigations. Multiple causes could contribute to these variations, including irradiation geometry, image equipment and type of technique applied, etc. From the results, we also observed that larger accumulated doses were presented in certain critical organs, such as salivary gland, thyroid gland and bone marrow. Potential biological affects associated with these findings warrant further investigation.

  15. 3D mapping of lithium in battery electrodes using neutron activation

    NASA Astrophysics Data System (ADS)

    He, Yuping; Downing, R. Gregory; Wang, Howard

    2015-08-01

    The neutron depth profiling technique based on the neutron activation reaction, 6Li (n, α) 3H, was applied with two dimensional (2D) pinhole aperture scans to spatially map lithium in 3D. The technique was used to study model LiFePO4 electrodes of rechargeable batteries for spatial heterogeneities of lithium in two cathode films that had undergone different electrochemical cycling histories. The method is useful for better understanding the functioning and failure of batteries using lithium as the active element.

  16. Anisotropic 3-D Crustal Velocity Structure of Idaho/ Oregon from a Joint Inversion of Group and Phase Velocities of Love and Rayleigh Waves from Ambient Seismic Noise: Results from the IDOR Project

    NASA Astrophysics Data System (ADS)

    Bremner, P. M.; Panning, M. P.; Russo, R.; Mocanu, V. I.; Stanciu, A. C.; Torpey, M. E.; Hongsresawat, S.; VanDecar, J. C.

    2015-12-01

    We present new 3-D radially anisotropic and isotropic crustal velocity models beneath central Idaho and eastern Oregon. We produced the velocity models from Love and horizontal component Rayleigh wave group and phase velocity measurements on the IDaho/ORegon (IDOR) Passive seismic network, 86 broadband seismic stations, dataset using ambient noise tomography and the methods of Gallego et. al (2010) and Lin et. al (2008). We calculated inter-station group/phase velocities in narrow frequency bands from travel-time measurements of the rotated stacked horizontal component cross-correlations (bandpass filtered between 2 and 30 seconds), which we used to invert for velocity structure beneath the network. We derived group and phase velocity maps for each frequency band using the damped least-squares inversion method of Tarantola (2005), and then jointly inverted for velocity with depth. Moho depths are prescribed in the joint inversions based on receiver functions, also from the IDOR seismic data, and provides a starting crustal velocity model. Goals of our work include refining models of crustal structure in the accreted Blue Mountain terranes in the western study area; determining the depth extent of the Salmon River Suture/West Idaho Shear Zone (WISZ), which crosses north-south through the middle of the network; determining the architecture of the Idaho batholith, an extensive largely crustal-derived pluton; and examining the nature of the autochthonous (?) North American crust and lithosphere beneath and east of the batholith.

  17. Investigating particle phase velocity in a 3D spouted bed by a novel fiber high speed photography method

    NASA Astrophysics Data System (ADS)

    Qian, Long; Lu, Yong; Zhong, Wenqi; Chen, Xi; Ren, Bing; Jin, Baosheng

    2013-07-01

    A novel fiber high speed photography method has been developed to measure particle phase velocity in a dense gas-solid flow. The measurement system mainly includes a fiber-optic endoscope, a high speed video camera, a metal halide light source and a powerful computer with large memory. The endoscope which could be inserted into the reactors is used to form motion images of particles within the measurement window illuminated by the metal halide lamp. These images are captured by the high speed video camera and processed through a series of digital image processing algorithms, such as calibration, denoising, enhancement and binarization in order to improve the image quality. Then particles' instantaneous velocity is figured out by tracking each particle in consecutive frames. Particle phase velocity is statistically calculated according to the probability of particle velocity in each frame within a time period. This system has been applied to the investigation of particles fluidization characteristics in a 3D spouted bed. The experimental results indicate that the particle fluidization feature in the region investigated could be roughly classified into three sections by particle phase vertical velocity and the boundary between the first section and the second is the surface where particle phase velocity tends to be 0, which is in good agreement with the results published in other literature.

  18. Analysis of non linear partially standing waves from 3D velocity measurements

    NASA Astrophysics Data System (ADS)

    Drevard, D.; Rey, V.; Svendsen, Ib; Fraunie, P.

    2003-04-01

    Surface gravity waves in the ocean exhibit an energy spectrum distributed in both frequency and direction of propagation. Wave data collection is of great importance in coastal zones for engineering and scientific studies. In particular, partially standing waves measurements near coastal structures and steep or barred beaches may be a requirement, for instance for morphodynamic studies. The aim of the present study is the analysis of partially standing surface waves icluding non-linear effects. According to 1st order Stokes theory, synchronous measurements of horizontal and vertical velocity components allow calculation of rate of standing waves (Drevard et al, 2003). In the present study, it is demonstrated that for deep water conditions, partially standing 2nd order Stokes waves induced velocity field is still represented by the 1st order solution for the velocity potential contrary to the surface elevation which exhibits harmonic components. For intermediate water depth, harmonic components appear not only in the surface elevation but also in the velocity fields, but their weight remains much smaller, because of the vertical decreasing wave induced motion. For irregular waves, the influence of the spectrum width on the non-linear effects in the analysis is discussed. Keywords: Wave measurements ; reflection ; non-linear effects Acknowledgements: This work was initiated during the stay of Prof. Ib Svendsen, as invited Professor, at LSEET in autumn 2002. This study is carried out in the framework of the Scientific French National Programmes PNEC ART7 and PATOM. Their financial supports are acknowledged References: Drevard, D., Meuret, A., Rey, V. Piazzola, J. And Dolle, A.. (2002). "Partially reflected waves measurements using Acoustic Doppler Velocimeter (ADV)", Submitted to ISOPE 03, Honolulu, Hawaii, May 2003.

  19. Validated 3D Velocity Models in Asia from Joint Regional Body- and Surface-Wave Tomography

    DTIC Science & Technology

    2009-02-17

    90, 150 and 210 km. Some features of note in the new model include: • Crustal thickening beneath the major orogenic zones in the region...the low velocity area with respect to the background model beneath central Iran, which may have implications for the active subduction processes...occurring beneath the Eurasian continental collision zone . The slice on the right at 85°E cuts across the Himalayan Front, from northeastern India into

  20. Efficient dense blur map estimation for automatic 2D-to-3D conversion

    NASA Astrophysics Data System (ADS)

    Vosters, L. P. J.; de Haan, G.

    2012-03-01

    Focus is an important depth cue for 2D-to-3D conversion of low depth-of-field images and video. However, focus can be only reliably estimated on edges. Therefore, Bea et al. [1] first proposed an optimization based approach to propagate focus to non-edge image portions, for single image focus editing. While their approach produces accurate dense blur maps, the computational complexity and memory requirements for solving the resulting sparse linear system with standard multigrid or (multilevel) preconditioning techniques, are infeasible within the stringent requirements of the consumer electronics and broadcast industry. In this paper we propose fast, efficient, low latency, line scanning based focus propagation, which mitigates the need for complex multigrid or (multilevel) preconditioning techniques. In addition we propose facial blur compensation to compensate for false shading edges that cause incorrect blur estimates in people's faces. In general shading leads to incorrect focus estimates, which may lead to unnatural 3D and visual discomfort. Since visual attention mostly tends to faces, our solution solves the most distracting errors. A subjective assessment by paired comparison on a set of challenging low-depth-of-field images shows that the proposed approach achieves equal 3D image quality as optimization based approaches, and that facial blur compensation results in a significant improvement.

  1. Pore detection in Computed Tomography (CT) soil 3D images using singularity map analysis

    NASA Astrophysics Data System (ADS)

    Sotoca, Juan J. Martin; Tarquis, Ana M.; Saa Requejo, Antonio; Grau, Juan B.

    2016-04-01

    X-ray Computed Tomography (CT) images have significantly helped the study of the internal soil structure. This technique has two main advantages: 1) it is a non-invasive technique, i.e., it doesńt modify the internal soil structure, and 2) it provides a good resolution. The major disadvantage is that these images are sometimes low-contrast in the solid/pore interface. One of the main problems in analyzing soil structure through CT images is to segment them in solid/pore space. To do so, we have different segmentation techniques at our disposal that are mainly based on thresholding methods in which global or local thresholds are calculated to separate pore space from solid space. The aim of this presentation is to develop the fractal approach to soil structure using "singularity maps" and the "Concentration-Area (CA) method". We will establish an analogy between mineralization processes in ore deposits and morphogenesis processes in soils. Resulting from this analogy a new 3D segmentation method is proposed, the "3D Singularity-CA" method. A comparison with traditional 3D segmentation methods will be performed to show the main differences among them.

  2. A Novel 2D-to-3D Video Conversion Method Using Time-Coherent Depth Maps

    PubMed Central

    Yin, Shouyi; Dong, Hao; Jiang, Guangli; Liu, Leibo; Wei, Shaojun

    2015-01-01

    In this paper, we propose a novel 2D-to-3D video conversion method for 3D entertainment applications. 3D entertainment is getting more and more popular and can be found in many contexts, such as TV and home gaming equipment. 3D image sensors are a new method to produce stereoscopic video content conveniently and at a low cost, and can thus meet the urgent demand for 3D videos in the 3D entertaiment market. Generally, 2D image sensor and 2D-to-3D conversion chip can compose a 3D image sensor. Our study presents a novel 2D-to-3D video conversion algorithm which can be adopted in a 3D image sensor. In our algorithm, a depth map is generated by combining global depth gradient and local depth refinement for each frame of 2D video input. Global depth gradient is computed according to image type while local depth refinement is related to color information. As input 2D video content consists of a number of video shots, the proposed algorithm reuses the global depth gradient of frames within the same video shot to generate time-coherent depth maps. The experimental results prove that this novel method can adapt to different image types, reduce computational complexity and improve the temporal smoothness of generated 3D video. PMID:26131674

  3. Identifying secondary structures in proteins using NMR chemical shift 3D correlation maps

    NASA Astrophysics Data System (ADS)

    Kumari, Amrita; Dorai, Kavita

    2013-06-01

    NMR chemical shifts are accurate indicators of molecular environment and have been extensively used as aids in protein structure determination. This work focuses on creating empirical 3D correlation maps of backbone chemical shift nuclei for use as identifiers of secondary structure elements in proteins. A correlated database of backbone nuclei chemical shifts was constructed from experimental structural data gathered from entries in the Protein Data Bank (PDB) as well as isotropic chemical shift values from the RefDB database. Rigorous statistical analysis of the maps led to the conclusion that specific correlations between triplets of backbone chemical shifts are best able to differentiate between different secondary structures such as α-helices, β-strands and turns. The method is compared with similar techniques that use NMR chemical shift information as aids in biomolecular structure determination and performs well in tests done on experimental data determined for different types of proteins, including large multi-domain proteins and membrane proteins.

  4. Structured light 3D depth map enhancement and gesture recognition using image content adaptive filtering

    NASA Astrophysics Data System (ADS)

    Ramachandra, Vikas; Nash, James; Atanassov, Kalin; Goma, Sergio

    2013-03-01

    A structured-light system for depth estimation is a type of 3D active sensor that consists of a structured-light projector that projects an illumination pattern on the scene (e.g. mask with vertical stripes) and a camera which captures the illuminated scene. Based on the received patterns, depths of different regions in the scene can be inferred. In this paper, we use side information in the form of image structure to enhance the depth map. This side information is obtained from the received light pattern image reflected by the scene itself. The processing steps run real time. This post-processing stage in the form of depth map enhancement can be used for better hand gesture recognition, as is illustrated in this paper.

  5. Mapping 3D Large-Scale Structure at z ˜2 with Lyman-α Forest Tomographic Mapping

    NASA Astrophysics Data System (ADS)

    Lee, Khee-Gan; Hennawi, J. F.; White, M.; Croft, R. A.; Prochaska, J. X.; Schlegel, D. J.; Suzuki, N.; Kneib, J.; Bailey, S. J.; Spergel, D. N.; Rix, H.; Strauss, M. A.

    2014-01-01

    The Lyman-α (Lyα) forest absorption at z>2 traces the underlying dark-matter distribution, and with a sufficient density of background sightlines can be used to create 3D tomographic maps of large-scale structure. Since the useful Lyα forest in each sightline spans ˜400-500 h-1Mpc, Lyα forest tomography can efficiently map out large-scale structure at z˜2. The Cosmic Lyman-Alpha Program for the Tomographic Reconstruction of Absorption Probes (CLAPTRAP) will be the first survey to attempt this technique. We aim to obtain spectra for a background grid of faint quasars and bright LBGs at 23D map with similar 3 h-1Mpc resolution to be reconstructed from the data. In a recent paper, we have found that spectra with S/N ˜ 4 per Å are sufficient to make excellent-quality tomographic maps that clearly trace the underlying dark-matter distribution at overdensities of order unity. This requires integrations of several hours on moderate-resolution spectrographs mounted on existing 8-10m telescopes, such as LRIS on the Keck-I telescope and VIMOS on the Very Large Telescopes. We aim to observe ˜1500-2000 background sources over 1 sq deg of the COSMOS field with Lyα forest coverage over 2.0map out a total comoving volume of ˜106h-3Mpc3, equivalent to the zCOSMOS and DEEP2 galaxy redshift maps out to z˜1. The total time requirement is 16 nights on either VLT-VIMOS or Keck-LRIS. The resulting tomographic maps will be the first 3D maps of large-scale structure at z>1. In conjunction with the rich multi-wavelength data from the COSMOS survey, these maps will facilitate the study of galaxies in the context of the large-scale environment, reveal the topology of large-scale structure at high-redshifts, and allow the direct detection of galaxy protoclusters at the intersections of the cosmic web. The

  6. Inlining 3d Reconstruction, Multi-Source Texture Mapping and Semantic Analysis Using Oblique Aerial Imagery

    NASA Astrophysics Data System (ADS)

    Frommholz, D.; Linkiewicz, M.; Poznanska, A. M.

    2016-06-01

    This paper proposes an in-line method for the simplified reconstruction of city buildings from nadir and oblique aerial images that at the same time are being used for multi-source texture mapping with minimal resampling. Further, the resulting unrectified texture atlases are analyzed for façade elements like windows to be reintegrated into the original 3D models. Tests on real-world data of Heligoland/ Germany comprising more than 800 buildings exposed a median positional deviation of 0.31 m at the façades compared to the cadastral map, a correctness of 67% for the detected windows and good visual quality when being rendered with GPU-based perspective correction. As part of the process building reconstruction takes the oriented input images and transforms them into dense point clouds by semi-global matching (SGM). The point sets undergo local RANSAC-based regression and topology analysis to detect adjacent planar surfaces and determine their semantics. Based on this information the roof, wall and ground surfaces found get intersected and limited in their extension to form a closed 3D building hull. For texture mapping the hull polygons are projected into each possible input bitmap to find suitable color sources regarding the coverage and resolution. Occlusions are detected by ray-casting a full-scale digital surface model (DSM) of the scene and stored in pixel-precise visibility maps. These maps are used to derive overlap statistics and radiometric adjustment coefficients to be applied when the visible image parts for each building polygon are being copied into a compact texture atlas without resampling whenever possible. The atlas bitmap is passed to a commercial object-based image analysis (OBIA) tool running a custom rule set to identify windows on the contained façade patches. Following multi-resolution segmentation and classification based on brightness and contrast differences potential window objects are evaluated against geometric constraints and

  7. Intra-retinal layer segmentation of 3D optical coherence tomography using coarse grained diffusion map.

    PubMed

    Kafieh, Raheleh; Rabbani, Hossein; Abramoff, Michael D; Sonka, Milan

    2013-12-01

    Optical coherence tomography (OCT) is a powerful and noninvasive method for retinal imaging. In this paper, we introduce a fast segmentation method based on a new variant of spectral graph theory named diffusion maps. The research is performed on spectral domain (SD) OCT images depicting macular and optic nerve head appearance. The presented approach does not require edge-based image information in localizing most of boundaries and relies on regional image texture. Consequently, the proposed method demonstrates robustness in situations of low image contrast or poor layer-to-layer image gradients. Diffusion mapping applied to 2D and 3D OCT datasets is composed of two steps, one for partitioning the data into important and less important sections, and another one for localization of internal layers. In the first step, the pixels/voxels are grouped in rectangular/cubic sets to form a graph node. The weights of the graph are calculated based on geometric distances between pixels/voxels and differences of their mean intensity. The first diffusion map clusters the data into three parts, the second of which is the area of interest. The other two sections are eliminated from the remaining calculations. In the second step, the remaining area is subjected to another diffusion map assessment and the internal layers are localized based on their textural similarities. The proposed method was tested on 23 datasets from two patient groups (glaucoma and normals). The mean unsigned border positioning errors (mean ± SD) was 8.52 ± 3.13 and 7.56 ± 2.95 μm for the 2D and 3D methods, respectively.

  8. Mass Movement Susceptibility in the Western San Juan Mountains, Colorado: A Preliminary 3-D Mapping Approach

    NASA Astrophysics Data System (ADS)

    Kelkar, K. A.; Giardino, J. R.

    2015-12-01

    Mass movement is a major activity that impacts lives of humans and their infrastructure. Human activity in steep, mountainous regions is especially at risk to this potential hazard. Thus, the identification and quantification of risk by mapping and determining mass movement susceptibility are fundamental in protecting lives, resources and ensuring proper land use regulation and planning. Specific mass-movement processes including debris flows, rock falls, snow avalanches and landslides continuously modify the landscape of the San Juan Mountains. Historically, large-magnitude slope failures have repeatedly occurred in the region. Common triggers include intense, long-duration precipitation, freeze-thaw processes, human activity and various volcanic lithologies overlying weaker sedimentary formations. Predicting mass movement is challenging because of its episodic and spatially, discontinuous occurrence. Landslides in mountain terrain are characterized as widespread, highly mobile and have a long duration of activity. We developed a 3-D model for landslide susceptibility using Geographic Information Systems Technology (GIST). The study area encompasses eight USGS quadrangles: Ridgway, Dallas, Mount Sneffels, Ouray, Telluride, Ironton, Ophir and Silverton. Fieldwork consisted of field reconnaissance mapping at 1:5,000 focusing on surficial geomorphology. Field mapping was used to identify potential locations, which then received additional onsite investigation and photographic documentation of features indicative of slope failure. A GIS module was created using seven terrain spatial databases: geology, surficial geomorphology (digitized), slope aspect, slope angle, vegetation, soils and distance to infrastructure to map risk. The GIS database will help determine risk zonation for the study area. Correlations between terrain parameters leading to slope failure were determined through the GIS module. This 3-D model will provide a spatial perspective of the landscape to

  9. Lapse-time-dependent coda-wave depth sensitivity to local velocity perturbations in 3-D heterogeneous elastic media

    NASA Astrophysics Data System (ADS)

    Obermann, Anne; Planès, Thomas; Hadziioannou, Céline; Campillo, Michel

    2016-10-01

    In the context of seismic monitoring, recent studies made successful use of seismic coda waves to locate medium changes on the horizontal plane. Locating the depth of the changes, however, remains a challenge. In this paper, we use 3-D wavefield simulations to address two problems: first, we evaluate the contribution of surface- and body-wave sensitivity to a change at depth. We introduce a thin layer with a perturbed velocity at different depths and measure the apparent relative velocity changes due to this layer at different times in the coda and for different degrees of heterogeneity of the model. We show that the depth sensitivity can be modelled as a linear combination of body- and surface-wave sensitivity. The lapse-time-dependent sensitivity ratio of body waves and surface waves can be used to build 3-D sensitivity kernels for imaging purposes. Second, we compare the lapse-time behaviour in the presence of a perturbation in horizontal and vertical slabs to address, for instance, the origin of the velocity changes detected after large earthquakes.

  10. Evaluation Model for Pavement Surface Distress on 3d Point Clouds from Mobile Mapping System

    NASA Astrophysics Data System (ADS)

    Aoki, K.; Yamamoto, K.; Shimamura, H.

    2012-07-01

    This paper proposes a methodology to evaluate the pavement surface distress for maintenance planning of road pavement using 3D point clouds from Mobile Mapping System (MMS). The issue on maintenance planning of road pavement requires scheduled rehabilitation activities for damaged pavement sections to keep high level of services. The importance of this performance-based infrastructure asset management on actual inspection data is globally recognized. Inspection methodology of road pavement surface, a semi-automatic measurement system utilizing inspection vehicles for measuring surface deterioration indexes, such as cracking, rutting and IRI, have already been introduced and capable of continuously archiving the pavement performance data. However, any scheduled inspection using automatic measurement vehicle needs much cost according to the instruments' specification or inspection interval. Therefore, implementation of road maintenance work, especially for the local government, is difficult considering costeffectiveness. Based on this background, in this research, the methodologies for a simplified evaluation for pavement surface and assessment of damaged pavement section are proposed using 3D point clouds data to build urban 3D modelling. The simplified evaluation results of road surface were able to provide useful information for road administrator to find out the pavement section for a detailed examination and for an immediate repair work. In particular, the regularity of enumeration of 3D point clouds was evaluated using Chow-test and F-test model by extracting the section where the structural change of a coordinate value was remarkably achieved. Finally, the validity of the current methodology was investigated by conducting a case study dealing with the actual inspection data of the local roads.

  11. A 3D endoscopy reconstruction as a saliency map for analysis of polyp shapes

    NASA Astrophysics Data System (ADS)

    Ruano, Josue; Martínez, Fabio; Gómez, Martín.; Romero, Eduardo

    2015-01-01

    A first diagnosis of colorectal cancer is performed by examination of polyp shape and appearance during an endoscopy routine procedure. However, the video-endoscopy is highly noisy because exacerbated physiological conditions like increased motility or secretion may limit the visual analysis of lesions. In this work a 3D reconstruction of the digestive tract is proposed, facilitating the polyp shape evaluation by highlighting its surface geometry and allowing an analysis from different perspectives. The method starts by a spatio-temporal map, constructed to group the different regions of the tract by their similar dynamic patterns during the sequence. Then, such map was convolved with a second derivative of a Gaussian kernel that emulates the camera distortion and allows to highlight the polyp surface. The position initialization in each frame of the kernel was computed from expert manual delineation and propagated along the sequence based on. Results show reliable reconstructions, with a salient 3D polyp structure that can then be better observed.

  12. Multi-layer 3D imaging using a few viewpoint images and depth map

    NASA Astrophysics Data System (ADS)

    Suginohara, Hidetsugu; Sakamoto, Hirotaka; Yamanaka, Satoshi; Suyama, Shiro; Yamamoto, Hirotsugu

    2015-03-01

    In this paper, we propose a new method that makes multi-layer images from a few viewpoint images to display a 3D image by the autostereoscopic display that has multiple display screens in the depth direction. We iterate simple "Shift and Subtraction" processes to make each layer image alternately. The image made in accordance with depth map like a volume slicing by gradations is used as the initial solution of iteration process. Through the experiments using the prototype stacked two LCDs, we confirmed that it was enough to make multi-layer images from three viewpoint images to display a 3D image. Limiting the number of viewpoint images, the viewing area that allows stereoscopic view becomes narrow. To broaden the viewing area, we track the head motion of the viewer and update screen images in real time so that the viewer can maintain correct stereoscopic view within +/- 20 degrees area. In addition, we render pseudo multiple viewpoint images using depth map, then we can generate motion parallax at the same time.

  13. Mapping gray-scale image to 3D surface scanning data by ray tracing

    NASA Astrophysics Data System (ADS)

    Li, Peng; Jones, Peter R. M.

    1997-03-01

    The extraction and location of feature points from range imaging is an important but difficult task in machine vision based measurement systems. There exist some feature points which are not able to be detected from pure geometric characteristics, particularly in those measurement tasks related to the human body. The Loughborough Anthropometric Shadow Scanner (LASS) is a whole body surface scanner based on structured light technique. Certain applications of LASS require accurate location of anthropometric landmarks from the scanned data. This is sometimes impossible from existing raw data because some landmarks do not appear in the scanned data. Identification of these landmarks has to resort to surface texture of the scanned object. Modifications to LASS were made to allow gray-scale images to be captured before or after the object was scanned. Two-dimensional gray-scale image must be mapped to the scanned data to acquire the 3D coordinates of a landmark. The method to map 2D images to the scanned data is based on the colinearity conditions and ray-tracing method. If the camera center and image coordinates are known, the corresponding object point must lie on a ray starting from the camera center and connecting to the image coordinate. By intersecting the ray with the scanned surface of the object, the 3D coordinates of a point can be solved. Experimentation has demonstrated the feasibility of the method.

  14. Study on 3-D velocity structure of crust and upper mantle in Sichuan-yunnan region, China

    USGS Publications Warehouse

    Wang, C.; Mooney, W.D.; Wang, X.; Wu, J.; Lou, H.; Wang, F.

    2002-01-01

    Based on the first arrival P and S data of 4 625 regional earthquakes recorded at 174 stations dispersed in the Yunnan and Sichuan Provinces, the 3-D velocity structure of crust and upper mantle in the region is determined, incorporating with previous deep geophysical data. In the upper crust, a positive anomaly velocity zone exists in the Sichuan basin, whereas a negative anomaly velocity zone exists in the western Sichuan plateau. The boundary between the positive and negative anomaly zones is the Longmenshan fault zone. The images of lower crust and upper mantle in the Longmenshan fault, Xianshuihe fault, Honghe fault and others appear the characteristic of tectonic boundary, indicating that the faults litely penetrate the Moho discontinuity. The negative velocity anomalies at the depth of 50 km in the Tengchong volcanic area and the Panxi tectonic zone appear to be associated with the temperature and composition variations in the upper mantle. The overall features of the crustal and the upper mantle structures in the Sichuan-Yunnan region are the lower average velocity in both crust and uppermost mantle, the large crustal thickness variations, and the existence of high conductivity layer in the crust or/and upper mantle, and higher geothermal value. All these features are closely related to the collision between the Indian and the Asian plates. The crustal velocity in the Sichuan-Yunnan rhombic block generally shows normal.value or positive anomaly, while the negative anomaly exists in the area along the large strike-slip faults as the block boundary. It is conducive to the crustal block side-pressing out along the faults. In the major seismic zones, the seismicity is relative to the negative anomaly velocity. Most strong earthquakes occurred in the upper-mid crust with positive anomaly or normal velocity, where the negative anomaly zone generally exists below.

  15. New 3D seismicity maps using chromo-stereoscopy with two alternative freewares

    NASA Astrophysics Data System (ADS)

    Okamoto, Y.

    2011-12-01

    Seismicity maps play a key role in an introduction of geosciences studies or outreach programs. Various techniques are used in order to show earthquakes in a three dimensional field. To use "chromo-stereoscopy" is our simple and easier-making solution. The Chroma Depth 3D Glasses are employed for this purpose. The glasses consist of two transparent blazed grating films covered with a paper holder and cost a little (1 US$). Looking through these glasses, the colored chart turns into three dimensional perspective due to the mechanism that the color codes make a depth dimension with dispersion. We use two complementary freewares to make maps, the GMT (Generic Mapping Tools, Wessel and Smith.1988) and the POV-Ray (Persistence of Vision Pty. Ltd. 2004). The two softwares have their own advantages; the GMT is specialized for map making with simple scripts, while the POV-Ray produces realistic 3D rendering images with more complicated scripts. The earthquakes are plotted with the rainbow color codes depending on their depths in a black background as printed or PC images. Therefore, the red colored shallow earthquakes are float in front and blue colored ones sink deeper. This effect is so amazing that the students who first wear these glasses are strongly moved and fascinated with this simple mechanism. The data used here are from JMA seismicity catalogue and USGS (ANSS) catalogue. The POV-Ray version needs coastline data, so we got them from the Coastline Extractor (NGDC) web site. Also, the POR-Ray has no function to draw lines in three dimensions, so we had to make some trials for showing them in relief. The main target of our map is "the Wadati-Beniof zone", in which the sub-ducting oceanic plate surface is fringed by deeper earthquakes colored yellow, green to blue. The active volcanic regions such as the Hawaii islands or the active fault regions such as the San Andreas Fault are also effective targets of our method. However, since their shallow complicated seismic

  16. Seismic moment tensor inversion using 3D velocity model and its application to the 2013 Lushan earthquake sequence

    NASA Astrophysics Data System (ADS)

    Zhu, Lupei; Zhou, Xiaofeng

    2016-10-01

    Source inversion of small-magnitude events such as aftershocks or mine collapses requires use of relatively high frequency seismic waveforms which are strongly affected by small-scale heterogeneities in the crust. In this study, we developed a new inversion method called gCAP3D for determining general moment tensor of a seismic source using Green's functions of 3D models. It inherits the advantageous features of the "Cut-and-Paste" (CAP) method to break a full seismogram into the Pnl and surface-wave segments and to allow time shift between observed and predicted waveforms. It uses grid search for 5 source parameters (relative strengths of the isotropic and compensated-linear-vector-dipole components and the strike, dip, and rake of the double-couple component) that minimize the waveform misfit. The scalar moment is estimated using the ratio of L2 norms of the data and synthetics. Focal depth can also be determined by repeating the inversion at different depths. We applied gCAP3D to the 2013 Ms 7.0 Lushan earthquake and its aftershocks using a 3D crustal-upper mantle velocity model derived from ambient noise tomography in the region. We first relocated the events using the double-difference method. We then used the finite-differences method and reciprocity principle to calculate Green's functions of the 3D model for 20 permanent broadband seismic stations within 200 km from the source region. We obtained moment tensors of the mainshock and 74 aftershocks ranging from Mw 5.2 to 3.4. The results show that the Lushan earthquake is a reverse faulting at a depth of 13-15 km on a plane dipping 40-47° to N46° W. Most of the aftershocks occurred off the main rupture plane and have similar focal mechanisms to the mainshock's, except in the proximity of the mainshock where the aftershocks' focal mechanisms display some variations.

  17. Re-Dimensional Thinking in Earth Science: From 3-D Virtual Reality Panoramas to 2-D Contour Maps

    ERIC Educational Resources Information Center

    Park, John; Carter, Glenda; Butler, Susan; Slykhuis, David; Reid-Griffin, Angelia

    2008-01-01

    This study examines the relationship of gender and spatial perception on student interactivity with contour maps and non-immersive virtual reality. Eighteen eighth-grade students elected to participate in a six-week activity-based course called "3-D GeoMapping." The course included nine days of activities related to topographic mapping.…

  18. Stardust Under a Microscope - 3D maps of Wild 2/81P Cometary Samples in Aerogel

    NASA Astrophysics Data System (ADS)

    White, Amanda J.; Ebel, Denton

    2016-01-01

    The NASA Stardust mission to comet Wild 2 returned to Earth in 2006 with cometary and interstellar material captured in aerogel. Cometary particles impacted an aerogel collector at a relative velocity of 6.1 km/s, creating three-dimensional (3D) impact tracks of melted and crushed aerogel, void space, and fragmented cometary material. Each track represents the history of a unique hypervelocity capture event. The nature of each impact, including the original state of the impactor, is recorded in track morphology and material distribution. Using a combination of 3D morphological data, chemical data, and microphysical models, it is possible to reconstruct track formation events and a model of the original impactor.The focus of this work is to fully characterize whole tracks both morphologically and chemically using solely non-destructive methods. To achieve this, we combine high-resolution laser scanning confocal microscope (LSCM) 3D imaging with synchrotron X-ray fluorescence (SXRF) chemical mapping. We are also beginning to incorporate Raman spectroscopy to perform mineral phase analysis of fine track wall material. Using a Zeiss LSM 710 LSCM located in the American Museum of Natural History, we have imaged the morphology of over a dozen, whole Stardust tracks at high resolution (<80 nm/pixel in XY). We obtain the distribution of fine material along the track walls both quickly and without disturbing the sample. Complementary chemical data is acquired using the GSECARS X-ray microbe on beamline 13-IDE at the Advance Photon Source (APS) of Argonne National Laboratory. X-ray fluorescence maps of each track were collected with 100ms/pixel dwell time at a resolution of 1 or 2 micron/pixel. Many tracks were tilted and mapped a second time for stereo measurements.A thorough understanding of how cometary material and aerogel is distributed along tracks is required to understand the events which occurred after impact and to back-calculate properties of the original impactor

  19. On the location of microseismic sources in instable rock slope areas: heterogeneous vs. homogenous 3D velocity models

    NASA Astrophysics Data System (ADS)

    Coviello, Velio; Manconi, Andrea; Occhiena, Cristina; Arattano, Massimo; Scavia, Claudio

    2013-04-01

    Rock-falls are one of the most common and hazardous phenomena occurring in mountainous areas. The formation of cracks in rocks is often accompanied by a sudden release of energy, which propagates in form of elastic waves and can be detected by a suitable transducer array. Therefore, geophones are among the most effective monitoring devices to investigate eventual precursors of rock-fall phenomena. However, the identification of an efficient procedure to forecast rock-fall occurrence in space and time is still an open challenge. In this study, we aim at developing an efficient procedure to locate microseismic sources relevant to cracking mechanisms, and thus gather indications on eventual precursors of rock-fall phenomena. Common seismic location tools usually implement homogeneous or multilayered velocity models but, in case of high slope gradients and heavily fractured rock masses, these simplifications may lead to errors on the correct estimation of the source location. Thus, we analyzed how the consideration of 3D material properties on the propagation medium may influence the location. In the framework of the Alcotra 2007-2013 Project MASSA (Medium And Small Size rock-fall hazard Assessment), a monitoring system composed by 8 triaxial geophones was installed in 2010 at the J.A. Carrel hut (3829 m a.s.l., Matterhorn, NW Italian Alps) and during the first year of operation the network recorded more than 600 natural events that exceeded a fixed threshold [1]. Despite the harsh environmental conditions of the study area, eighteen points distributed as uniformly as possible in space were selected for hammering. The artificial source dataset of known coordinates was used to constrain a 3D heterogeneous velocity model through a Simultaneous Iterative Reconstructive Technique. In order to mitigate the intrinsic uncertainties of the inversion procedure, bootstrapping was performed to extend the dataset and a statistical analysis was issued to improve the model

  20. SU-F-BRB-05: Collision Avoidance Mapping Using Consumer 3D Camera

    SciTech Connect

    Cardan, R; Popple, R

    2015-06-15

    Purpose: To develop a fast and economical method of scanning a patient’s full body contour for use in collision avoidance mapping without the use of ionizing radiation. Methods: Two consumer level 3D cameras used in electronic gaming were placed in a CT simulator room to scan a phantom patient set up in a high collision probability position. A registration pattern and computer vision algorithms were used to transform the scan into the appropriate coordinate systems. The cameras were then used to scan the surface of a gantry in the treatment vault. Each scan was converted into a polygon mesh for collision testing in a general purpose polygon interference algorithm. All clinically relevant transforms were applied to the gantry and patient support to create a map of all possible collisions. The map was then tested for accuracy by physically testing the collisions with the phantom in the vault. Results: The scanning fidelity of both the gantry and patient was sufficient to produce a collision prediction accuracy of 97.1% with 64620 geometry states tested in 11.5 s. The total scanning time including computation, transformation, and generation was 22.3 seconds. Conclusion: Our results demonstrate an economical system to generate collision avoidance maps. Future work includes testing the speed of the framework in real-time collision avoidance scenarios. Research partially supported by a grant from Varian Medical Systems.

  1. Indoor Localization Algorithms for an Ambulatory Human Operated 3D Mobile Mapping System

    SciTech Connect

    Corso, N; Zakhor, A

    2013-12-03

    Indoor localization and mapping is an important problem with many applications such as emergency response, architectural modeling, and historical preservation. In this paper, we develop an automatic, off-line pipeline for metrically accurate, GPS-denied, indoor 3D mobile mapping using a human-mounted backpack system consisting of a variety of sensors. There are three novel contributions in our proposed mapping approach. First, we present an algorithm which automatically detects loop closure constraints from an occupancy grid map. In doing so, we ensure that constraints are detected only in locations that are well conditioned for scan matching. Secondly, we address the problem of scan matching with poor initial condition by presenting an outlier-resistant, genetic scan matching algorithm that accurately matches scans despite a poor initial condition. Third, we present two metrics based on the amount and complexity of overlapping geometry in order to vet the estimated loop closure constraints. By doing so, we automatically prevent erroneous loop closures from degrading the accuracy of the reconstructed trajectory. The proposed algorithms are experimentally verified using both controlled and real-world data. The end-to-end system performance is evaluated using 100 surveyed control points in an office environment and obtains a mean accuracy of 10 cm. Experimental results are also shown on three additional datasets from real world environments including a 1500 meter trajectory in a warehouse sized retail shopping center.

  2. Present-Day 3D Velocity Field of Eastern North America Based on Continuous GPS Observations

    NASA Astrophysics Data System (ADS)

    Goudarzi, Mohammad Ali; Cocard, Marc; Santerre, Rock

    2016-07-01

    The Saint Lawrence River valley in eastern Canada was studied using observations of continuously operating GPS (CGPS) stations. The area is one of the most seismically active regions in eastern North America characterized by many earthquakes, which is also subject to an ongoing glacial isostatic adjustment. We present the current three-dimensional velocity field of eastern North America obtained from more than 14 years (9 years on average) of data at 112 CGPS stations. Bernese GNSS and GITSA software were used for CGPS data processing and position time series analysis, respectively. The results show the counterclockwise rotation of the North American plate in the No-Net-Rotation model with the average of 16.8 ± 0.7 mm/year constrained to ITRF 2008. We also present an ongoing uplift model for the study region based on the present-day CGPS observations. The model shows uplift all over eastern Canada with the maximum rate of 13.7 ± 1.2 mm/year and subsidence to the south mainly over northern USA with a typical rate of -1 to -2 mm/year and the minimum value of -2.7 ± 1.4 mm/year. We compared our model with the rate of radial displacements from the ICE-5G model. Both models agree within 0.02 mm/year at the best stations; however, our model shows a systematic spatial tilt compared to ICE-5G. The misfits between two models amount to the maximum relative subsidence of -6.1 ± 1.1 mm/year to the east and maximum relative uplift of 5.9 ± 2.7 mm/year to the west. The intraplate horizontal velocities are radially outward from the centers of maximum uplift and are inward to the centers of maximum subsidence with the typical velocity of 1-1.6 ± 0.4 mm/year that is in agreement with the ICE-5G model to the first order.

  3. A Robust Method to Detect Zero Velocity for Improved 3D Personal Navigation Using Inertial Sensors

    PubMed Central

    Xu, Zhengyi; Wei, Jianming; Zhang, Bo; Yang, Weijun

    2015-01-01

    This paper proposes a robust zero velocity (ZV) detector algorithm to accurately calculate stationary periods in a gait cycle. The proposed algorithm adopts an effective gait cycle segmentation method and introduces a Bayesian network (BN) model based on the measurements of inertial sensors and kinesiology knowledge to infer the ZV period. During the detected ZV period, an Extended Kalman Filter (EKF) is used to estimate the error states and calibrate the position error. The experiments reveal that the removal rate of ZV false detections by the proposed method increases 80% compared with traditional method at high walking speed. Furthermore, based on the detected ZV, the Personal Inertial Navigation System (PINS) algorithm aided by EKF performs better, especially in the altitude aspect. PMID:25831086

  4. 3D viscosity maps for Greenland and effect on GRACE mass balance estimates

    NASA Astrophysics Data System (ADS)

    van der Wal, Wouter; Xu, Zheng

    2016-04-01

    The GRACE satellite mission measures mass loss of the Greenland ice sheet. To correct for glacial isostatic adjustment numerical models are used. Although generally found to be a small signal, the full range of possible GIA models has not been explored yet. In particular, low viscosities due to a wet mantle and high temperatures due to the nearby Iceland hotspot could have a significant effect on GIA gravity rates. The goal of this study is to present a range of possible viscosity maps, and investigate the effect on GRACE mass balance estimates. Viscosity is derived using flow laws for olivine. Mantle temperature is computed from global seismology models, based on temperature derivatives for different mantle compositions. An indication for grain sizes is obtained by xenolith findings at a few locations. We also investigate the weakening effect of the presence of melt. To calculate gravity rates, we use a finite-element GIA model with the 3D viscosity maps and the ICE-5G loading history. GRACE mass balances for mascons in Greenland are derived with a least-squares inversion, using separate constraints for the inland and coastal areas in Greenland. Biases in the least-squares inversion are corrected using scale factors estimated from a simulation based on a surface mass balance model (Xu et al., submitted to The Cryosphere). Model results show enhanced gravity rates in the west and south of Greenland with 3D viscosity maps, compared to GIA models with 1D viscosity. The effect on regional mass balance is up to 5 Gt/year. Regional low viscosity can make present-day gravity rates sensitivity to ice thickness changes in the last decades. Therefore, an improved ice loading history for these time scales is needed.

  5. 2D/3D registration for X-ray guided bronchoscopy using distance map classification.

    PubMed

    Xu, Di; Xu, Sheng; Herzka, Daniel A; Yung, Rex C; Bergtholdt, Martin; Gutierrez, Luis F; McVeigh, Elliot R

    2010-01-01

    In X-ray guided bronchoscopy of peripheral pulmonary lesions, airways and nodules are hardly visible in X-ray images. Transbronchial biopsy of peripheral lesions is often carried out blindly, resulting in degraded diagnostic yield. One solution of this problem is to superimpose the lesions and airways segmented from preoperative 3D CT images onto 2D X-ray images. A feature-based 2D/3D registration method is proposed for the image fusion between the datasets of the two imaging modalities. Two stereo X-ray images are used in the algorithm to improve the accuracy and robustness of the registration. The algorithm extracts the edge features of the bony structures from both CT and X-ray images. The edge points from the X-ray images are categorized into eight groups based on the orientation information of their image gradients. An orientation dependent Euclidean distance map is generated for each group of X-ray feature points. The distance map is then applied to the edge points of the projected CT images whose gradient orientations are compatible with the distance map. The CT and X-ray images are registered by matching the boundaries of the projected CT segmentations to the closest edges of the X-ray images after the orientation constraint is satisfied. Phantom and clinical studies were carried out to validate the algorithm's performance, showing a registration accuracy of 4.19(± 0.5) mm with 48.39(± 9.6) seconds registration time. The algorithm was also evaluated on clinical data, showing promising registration accuracy and robustness.

  6. Resolving the 3D velocity field inside a Roughness Sublayer in a turbulent channel flow using HPIV

    NASA Astrophysics Data System (ADS)

    Talapatra, Siddharth; Katz, Joseph

    2010-11-01

    Microscopic holographic PIV is used to measure the 3D velocity field within the roughness sublayer of a turbulent channel flow at Reτ of 3400. Recording holograms through a rough surface is facilitated by matching the optical refractive index of the rough wall with that of the working fluid, a concentrated solution of NaI in water. The pyramidal roughness height is k=0.45mm, the sample volume size is 3.2x1.8x1.8mm^3, the long dimension being in the streamwise direction, and the wall-normal range is -0.333D grid to obtain vectors with a spacing of 60μm or 8.5 wall units. The data show that at y/k<0.5, there is a preferred channeling of the flow along paths that circumvent the pyramid crest lines. Planar vorticity distribution from different perspectives as well as 3D isosurfaces show that the near wall region is flooded by quasi-streamwise vortices that are aligned at shallow angles and have a typical streamwise extent of 1-2k.

  7. Near-wall 3D velocity measurements above biomimetic shark skin denticles using Digital In-line Holographic Microscopy

    NASA Astrophysics Data System (ADS)

    Toloui, Mostafa; Brajkovic, David; Hong, Jiarong

    2014-11-01

    Digital In-line Holography is employed to image 3D flow structures in the vicinity of a transparent rough surface consisting of closely packed biomimetic shark skin denticles as roughness elements. The 3D printed surface replicates the morphological features of real shark skin, and the denticles have a geometrical scale of 2 mm, i.e. 10 times of the real ones. In order to minimize optical aberrations near the fluid-roughness interface and enable flow measurements around denticles, the optical refractive index of the fluid medium is maintained the same as that of the denticle model in an index-matched flow facility using NaI solution as the working fluid. The experiment is conducted in a 1.2 m long test section with 50 mm × 50 mm cross section. The sampling volume is located in the downstream region of a shark skin replica of 12'' stretch where the turbulent flow is fully-developed and the transitional effect from smooth to the rough surface becomes negligible. Several instantaneous realizations of the 3D velocity field are obtained and are used to illustrate turbulent coherent structures induced by shark-skin denticles. This information will provide insights on the hydrodynamic function of shark's unique surface ornamentation.

  8. B1-insensitive T2 mapping of healthy thigh muscles using a T2-prepared 3D TSE sequence

    PubMed Central

    Klupp, Elisabeth; Weidlich, Dominik; Schlaeger, Sarah; Baum, Thomas; Cervantes, Barbara; Deschauer, Marcus; Kooijman, Hendrik; Rummeny, Ernst J.; Zimmer, Claus; Kirschke, Jan S.; Karampinos, Dimitrios C.

    2017-01-01

    Purpose To propose a T2-prepared 3D turbo spin echo (T2prep 3D TSE) sequence for B1-insensitive skeletal muscle T2 mapping and compare its performance with 2D and 3D multi-echo spin echo (MESE) for T2 mapping in thigh muscles of healthy subjects. Methods The performance of 2D MESE, 3D MESE and the proposed T2prep 3D TSE in the presence of transmit B1 and B0 inhomogeneities was first simulated. The thigh muscles of ten young and healthy subjects were then scanned on a 3 T system and T2 mapping was performed using the three sequences. Transmit B1-maps and proton density fat fraction (PDFF) maps were also acquired. The subjects were scanned three times to assess reproducibility. T2 values were compared among sequences and their sensitivity to B1 inhomogeneities was compared to simulation results. Correlations were also determined between T2 values, PDFF and B1. Results The left rectus femoris muscle showed the largest B1 deviations from the nominal value (from 54.2% to 92.9%). Significant negative correlations between T2 values and B1 values were found in the left rectus femoris muscle for 3D MESE (r = -0.72, p<0.001) and 2D MESE (r = -0.71, p<0.001), but not for T2prep 3D TSE (r = -0.32, p = 0.09). Reproducibility of T2 expressed by root mean square coefficients of variation (RMSCVs) were equal to 3.5% in T2prep 3D TSE, 2.6% in 3D MESE and 2.4% in 2D MESE. Significant differences between T2 values of 3D sequences (T2prep 3D TSE and 3D MESE) and 2D MESE were found in all muscles with the highest values for 2D MESE (p<0.05). No significant correlations were found between PDFF and T2 values. Conclusion A strong influence of an inhomogeneous B1 field on the T2 values of 3D MESE and 2D MESE was shown, whereas the proposed T2prep 3D TSE gives B1-insensitive and reproducible thigh muscle T2 mapping. PMID:28196133

  9. Non-destructive mapping of grain orientations in 3D by laboratory X-ray microscopy

    PubMed Central

    McDonald, S. A.; Reischig, P.; Holzner, C.; Lauridsen, E. M.; Withers, P. J.; Merkle, A. P.; Feser, M.

    2015-01-01

    The ability to characterise crystallographic microstructure, non-destructively and in three-dimensions, is a powerful tool for understanding many aspects related to damage and deformation mechanisms in polycrystalline materials. To this end, the technique of X-ray diffraction contrast tomography (DCT) using monochromatic synchrotron and polychromatic laboratory X-ray sources has been shown to be capable of mapping crystal grains and their orientations non-destructively in 3D. Here we describe a novel laboratory-based X-ray DCT modality (LabDCT), enabling the wider accessibility of the DCT technique for routine use and in-depth studies of, for example, temporal changes in crystallographic grain structure non-destructively over time through ‘4D’ in situ time-lapse studies. The capability of the technique is demonstrated by studying a titanium alloy (Ti-β21S) sample. In the current implementation the smallest grains that can be reliably detected are around 40 μm. The individual grain locations and orientations are reconstructed using the LabDCT method and the results are validated against independent measurements from phase contrast tomography and electron backscatter diffraction respectively. Application of the technique promises to provide important insights related to the roles of recrystallization and grain growth on materials properties as well as supporting 3D polycrystalline modelling of materials performance. PMID:26494523

  10. Mapping Nearby Terrain in 3D by Use of a Grid of Laser Spots

    NASA Technical Reports Server (NTRS)

    Padgett, Curtis; Liebe, Carl; Chang, Johnny; Brown, Kenneth

    2007-01-01

    A proposed optoelectronic system, to be mounted aboard an exploratory robotic vehicle, would be used to generate a three-dimensional (3D) map of nearby terrain and obstacles for purposes of navigating the vehicle across the terrain and avoiding the obstacles. The difference between this system and the other systems would lie in the details of implementation. In this system, the illumination would be provided by a laser. The beam from the laser would pass through a two-dimensional diffraction grating, which would divide the beam into multiple beams propagating in different, fixed, known directions. These beams would form a grid of bright spots on the nearby terrain and obstacles. The centroid of each bright spot in the image would be computed. For each such spot, the combination of (1) the centroid, (2) the known direction of the light beam that produced the spot, and (3) the known baseline would constitute sufficient information for calculating the 3D position of the spot.

  11. GPR data processing for 3D fracture mapping in a marble quarry (Thassos, Greece)

    NASA Astrophysics Data System (ADS)

    Grandjean, G.; Gourry, J. C.

    1996-11-01

    Ground Penetrating Radar (GPR) has been successfully applied to detect and map fractures in marble quarries. The aim was to distinguish quickly intact marketable marble areas from fractured ones in order to improve quarry management. The GPR profiling method was chosen because it is non destructive and quickly provides a detailed image of the subsurface. It was performed in domains corresponding to future working areas in real quarry-exploitation conditions. Field surveying and data processing were adapted to the local characteristics of the fractures: E-W orientation, sub-vertical dip, and karst features. After the GPR profiles had been processed, using methods adapted from seismics (amplitude compensation, filtering and Fourier migration), the interpreted fractures from a 12 × 24 × 15 m zone were incorporated into a 3D model. Due to the low electrical conductivity of the marble, GPR provides penetration depths of about 8 and 15 m, and resolutions of about 1 and 5 cm for frequencies of 900 and 300 MHz respectively. The detection power thus seems to be sufficient to recommend use of this method. As requested by the quarriers, the 3D representation can be used directly by themselves to locate high- or low-quality marble areas. Comparison between the observed surface fractures and the fractures detected using GPR showed reasonable correlation.

  12. 3D mechanical modeling of the GPS velocity field along the North Anatolian fault

    NASA Astrophysics Data System (ADS)

    Provost, Ann-Sophie; Chéry, Jean; Hassani, Riad

    2003-04-01

    The North Anatolian fault (NAF) extends over 1500 km in a complex tectonic setting. In this region of the eastern Mediterranean, collision of the Arabian, African and Eurasian plates resulted in creation of mountain ranges (i.e. Zagros, Caucasus) and the westward extrusion of the Anatolian block. In this study we investigate the effects of crustal rheology on the long-term displacement rate along the NAF. Heat flow and geodetic data are used to constrain our mechanical model, built with the three-dimensional finite element code ADELI. The fault motion occurs on a material discontinuity of the model which is controlled by a Coulomb-type friction. The rheology of the lithosphere is composed of a frictional upper crust and a viscoelastic lower crust. The lithosphere is supported by a hydrostatic pressure at its base (representing the asthenospheric mantle). We model the long-term deformation of the surroundings of the NAF by adjusting the effective fault friction and also the geometry of the surface fault trace. To do so, we used a frictional range of 0.0-0.2 for the fault, and a viscosity varying between 10 19 and 10 21 Pa s. One of the most striking results of our rheological tests is that the upper part of the fault is locked if the friction exceeds 0.2. By comparing our results with geodetic measurements [McClusky et al., J. Geophys. Res. B 105 (2000) 5695-5719] and tectonic observations, we have defined a realistic model in which the displacement rate on the NAF reaches ˜17 mm/yr for a viscosity of 10 19 Pa s and a fault friction of 0.05. This strongly suggests that the NAF is a weak fault like the San Andreas fault in California. Adding topography with its corresponding crustal root does not induce gravity flow of Anatolia. Rather, it has the counter-intuitive effect of decreasing the westward Anatolian escape. We find a poor agreement between our calculated velocity field and what is observed with GPS in the Marmara and the Aegean regions. We suspect that the

  13. 3D Anisotropic Velocity Tomography of a Water Saturated Rock under True-Triaxial Stress in the Laboratory

    NASA Astrophysics Data System (ADS)

    Ghofrani Tabari, M.; Goodfellow, S. D.; Nasseri, M. B.; Young, R.

    2013-12-01

    A cubic specimen of water saturated Fontainebleau Sandstone is tested in the laboratory under true-triaxial loading where three different principal stresses are applied under drained conditions. Due to the loading arrangement, closure and opening of the pre-existing cracks in the rock, as well as creation and growth of the aligned cracks cause elliptical anisotropy and distributed heterogeneities. A Geophysical Imaging Cell equipped with an Acoustic Emission monitoring system is employed to image velocity structure of the sample during the experiment through repeated transducer to transducer non-destructive ultrasonic surveys. Apparent P-wave velocities along the rock body are calculated in different directions and shown in stereonet plots which demonstrate an overall anisotropy of the sample. The apparent velocities in the main three orthogonal cubic directions are used as raw data for building a mean spatial distribution model of anisotropy ratios. This approach is based on the concept of semi-principal axes in an elliptical anisotropic model and appointing two ratios between the three orthogonal velocities in each of the cubic grid cells. The spatial distribution model of anisotropy ratios are used to calculate the anisotropic ray-path segment matrix elements (Gij). These contain segment lengths of the ith ray in the jth cell in three dimensions where, length of each ray in each cell is computed for one principal direction based on the dip and strike of the ray and these lengths differ from the ones in an isotropic G Matrix. 3D strain of the squeezed rock and the consequent geometrical deformation is also included in the ray-path segment matrix. A Singular Value Decomposition (SVD) method is used for inversion from the data space of apparent velocities to the model space of P-wave propagation velocities in the three principal directions. Finally, spatial variation and temporal evolution of induced damages in the rock, representing uniformly distributed or

  14. 3D mapping of nanoscale electric potentials in semiconductor structures using electron-holographic tomography

    NASA Astrophysics Data System (ADS)

    Wolf, Daniel; Lubk, Axel; Prete, Paola; Lovergine, Nico; Lichte, Hannes

    2016-09-01

    Off-axis electron holography (EH) is a powerful method for mapping projected electric potentials, such as built-in potentials in semiconductor devices, in two dimensions (2D) at nanometer resolution. However, not well-defined thickness profiles, surface effects, and composition changes of the sample under investigation complicate the interpretation of the projected potentials. Here, we demonstrate how these problems can be overcome by combining EH with tomographic techniques, that is, electron holographic tomography (EHT), reconstructing electric potentials in 3D. We present EHT reconstructions of an n-type MOSFET including its dopant-related built-in potentials inside the device, as well as of a GaAs/AlGaAs core-multishell nanowire containing a 5 nm thick quantum well tube.

  15. 3D-Mapping of Dolomitized Structures in Lower Cambrian Phosphorites

    NASA Astrophysics Data System (ADS)

    Hippler, Dorothee; Stammeier, Jessica A.; Brunner, Roland; Rosc, Jördis; Franz, Gerhard; Dietzel, Martin

    2016-04-01

    Dolomitization is a widespread phenomenon in ancient sedimentary rocks, particularly close to the Precambrian-Cambrian boundary. Dolomite can form in synsedimentary or hydrothermal environments, preferentially via the replacement of solid carbonate precursor phases. Synsedimentary dolomite formation is often associated with microbial activity, such as bacterial sulfate reduction or methanogenesis. In this study, we investigate dolomitic phosphorites from the Lowermost Cambrian Tal Group, Mussoori Syncline, Lesser Himalaya, India, using micro-CT 3D-mapping, in order to unravel the complex diagenetic history of the rocks. The selected sample shows alternating layering of phosphatic mudstones and sparitic dolostone, in which brecciated layers of phosphorite or phosphatic mudstones are immersed in a dolomite-rich matrix. Lamination occurs on a sub-millimetre scale, with lamination sometimes wavy to crinkly. This fabric is interpreted as former microbial mats, providing the environment for early diagenetic phosphatization. Preliminary electron backscatter imaging with scanning microscopy revealed that dolomite crystals often occur in spherical to ellipsoidal structures, typically with a high porosity. This dolomite is associated with botryoidal apatite, organic matter and small amounts of calcite. Micro-CT 3D-mappings reveal that dolomite structures are cigar-shaped, elongated and up to 600 μm long. They are further arranged in a Mikado-like oriented framework spanning a layer thickness of a few millimetres. Analyses of ambient pore space, with similar elongated outlines and filled with organic matter, suggest a potential coherence of ambient pore space and shape of the dolomite structures. Allowing for other associated mineral phases, such as pyrite and silicates, and their spatial distribution, the present approach can be used to unravel distinct diagenetic reaction pathways, and might thus constrain the proxy potential of these Lower Cambrian dolomitic phosphorites

  16. True-3D accentuating of grids and streets in urban topographic maps enhances human object location memory.

    PubMed

    Edler, Dennis; Bestgen, Anne-Kathrin; Kuchinke, Lars; Dickmann, Frank

    2015-01-01

    Cognitive representations of learned map information are subject to systematic distortion errors. Map elements that divide a map surface into regions, such as content-related linear symbols (e.g. streets, rivers, railway systems) or additional artificial layers (coordinate grids), provide an orientation pattern that can help users to reduce distortions in their mental representations. In recent years, the television industry has started to establish True-3D (autostereoscopic) displays as mass media. These modern displays make it possible to watch dynamic and static images including depth illusions without additional devices, such as 3D glasses. In these images, visual details can be distributed over different positions along the depth axis. Some empirical studies of vision research provided first evidence that 3D stereoscopic content attracts higher attention and is processed faster. So far, the impact of True-3D accentuating has not yet been explored concerning spatial memory tasks and cartography. This paper reports the results of two empirical studies that focus on investigations whether True-3D accentuating of artificial, regular overlaying line features (i.e. grids) and content-related, irregular line features (i.e. highways and main streets) in official urban topographic maps (scale 1/10,000) further improves human object location memory performance. The memory performance is measured as both the percentage of correctly recalled object locations (hit rate) and the mean distances of correctly recalled objects (spatial accuracy). It is shown that the True-3D accentuating of grids (depth offset: 5 cm) significantly enhances the spatial accuracy of recalled map object locations, whereas the True-3D emphasis of streets significantly improves the hit rate of recalled map object locations. These results show the potential of True-3D displays for an improvement of the cognitive representation of learned cartographic information.

  17. True-3D Accentuating of Grids and Streets in Urban Topographic Maps Enhances Human Object Location Memory

    PubMed Central

    Edler, Dennis; Bestgen, Anne-Kathrin; Kuchinke, Lars; Dickmann, Frank

    2015-01-01

    Cognitive representations of learned map information are subject to systematic distortion errors. Map elements that divide a map surface into regions, such as content-related linear symbols (e.g. streets, rivers, railway systems) or additional artificial layers (coordinate grids), provide an orientation pattern that can help users to reduce distortions in their mental representations. In recent years, the television industry has started to establish True-3D (autostereoscopic) displays as mass media. These modern displays make it possible to watch dynamic and static images including depth illusions without additional devices, such as 3D glasses. In these images, visual details can be distributed over different positions along the depth axis. Some empirical studies of vision research provided first evidence that 3D stereoscopic content attracts higher attention and is processed faster. So far, the impact of True-3D accentuating has not yet been explored concerning spatial memory tasks and cartography. This paper reports the results of two empirical studies that focus on investigations whether True-3D accentuating of artificial, regular overlaying line features (i.e. grids) and content-related, irregular line features (i.e. highways and main streets) in official urban topographic maps (scale 1/10,000) further improves human object location memory performance. The memory performance is measured as both the percentage of correctly recalled object locations (hit rate) and the mean distances of correctly recalled objects (spatial accuracy). It is shown that the True-3D accentuating of grids (depth offset: 5 cm) significantly enhances the spatial accuracy of recalled map object locations, whereas the True-3D emphasis of streets significantly improves the hit rate of recalled map object locations. These results show the potential of True-3D displays for an improvement of the cognitive representation of learned cartographic information. PMID:25679208

  18. A New Ionosphere Tomography Algorithm with Two-Grids Virtual Observations Constraints and 3D Velocity Profile

    NASA Astrophysics Data System (ADS)

    Kong, Jian; Yao, Yibin; Shum, Che-Kwan

    2014-05-01

    Due to the sparsity of world's GNSS stations and limitations of projection angles, GNSS-based ionosphere tomography is a typical ill-posed problem. There are two main ways to solve this problem. Firstly the joint inversion method combining multi-source data is one of the effective ways. Secondly using a priori or reference ionosphere models, e.g., IRI or GIM models, as the constraints to improve the state of normal equation is another effective approach. The traditional way for adding constraints with virtual observations can only solve the problem of sparse stations but the virtual observations still lack horizontal grid constraints therefore unable to fundamentally improve the near-singularity characteristic of the normal equation. In this paper, we impose a priori constraints by increasing the virtual observations in n-dimensional space, which can greatly reduce the condition number of the normal equation. Then after the inversion region is gridded, we can form a stable structure among the grids with loose constraints. We then further consider that the ionosphere indeed changes within certain temporal scale, e.g., two hours. In order to establish a more sophisticated and realistic ionosphere model and obtain the real time ionosphere electron density velocity (IEDV) information, we introduce the grid electron density velocity parameters, which can be estimated with electron density parameters simultaneously. The velocity parameters not only can enhance the temporal resolution of the ionosphere model thereby reflecting more elaborate structure (short-term disturbances) under ionosphere disturbances status, but also provide a new way for the real-time detection and prediction of ionosphere 3D changes. We applied the new algorithm to the GNSS data collected in Europe for tomography inversion for ionosphere electron density and velocity at 2-hour resolutions, which are consistent throughout the whole day variation. We then validate the resulting tomography model

  19. Velocity Gradient Maps Directly Measured by PLF

    NASA Astrophysics Data System (ADS)

    Quintella, Cristina M.; Gonçalves, Cristiane C.; Lima, Angelo Mv; Pepe, Iuri M.

    2000-11-01

    Flows are macroscopically classified as laminar or turbulent due to their velocity distributions, nevertheless most chemical and biological phenomena are yield or enhanced by intermolecular orientation and microscopic turbulence. Here was studied a 100micra liquid sheet produced by a slit nozzle, both flowing freely into air and over a borosilicate surface (roughness bellow 5nm), ranging from 17 to 36Re (143 to 297cm/s, similar to muscles and brain blood flow). Mono ethylene glycol was used either pure, or with sodium alkyl benzene sulfated (ABS) surfactant (24.5mol/L, submicellar), or with poly(ethylene oxide) (PEO) (1409ppm, 4millions aw). Velocity gradients were directly measured by 514nm polarized laser induced fluorescence (PLF) with R6G as probe. Intermolecular alignment (IA) maps were obtained all over the flow (about 1,950 points, 0.02mm2 precision). The free jet average IA has increased 57% when flowing over borosilicate. With ABS, the IA increased, suggesting wall drag reduction. With PEO the IA decreases due to solvent intermolecular forces attenuation, generating wider turbulent areas. PLF proved to be an excellent method to evaluate IA within liquid thin flows. Chosen solute additions permits IA control over wide regions.

  20. The 3-D strain patterns in Turkey using geodetic velocity fields from the RTK-CORS (TR) network

    NASA Astrophysics Data System (ADS)

    Kutoglu, Hakan Senol; Toker, Mustafa; Mekik, Cetin

    2016-03-01

    This study presents our use of GPS data to obtain and quantify the full continuous strain tensor using a 3-D velocity field in Turkey. In this study, GPS velocities improve the estimation of short-term strain tensor fields for determining the seismic hazard of Turkey. The tensorial analysis presents different aspects of deformation, such as the normal and shear strains, including their directions, the compressional and extensional strains. This analysis is appropriate for the characterizing the state of the current seismic deformation. GPS velocity data from continuous measurements (2009-2012) to estimate deformations were processed using the GAMIT/GLOBK software. Using high-rate GPS data from permanent 146 GNSS stations (RTK-CORS-TR network), the strain distribution was determined and interpolated using a biharmonic spline technique. We show the strain field patterns within axial and plane form at several critical locations, and discuss these results within the context of the seismic and tectonic deformation of Turkey. We conclude that the knowledge of the crustal strain patterns provides important information on the location of the main faults and strain accumulation for the hazard assessment. The results show an agreement between the seismic and tectonic strains confirming that there are active crustal deformations in Turkey.

  1. 3D tomographic reconstruction of the internal velocity field of an immiscible drop in a shear flow

    NASA Astrophysics Data System (ADS)

    Kerdraon, Paul; Dalziel, Stuart B.; Goldstein, Raymond E.; Landel, Julien R.; Peaudecerf, Francois J.

    2015-11-01

    We study experimentally the internal flow of a drop attached to a flat substrate and immersed in an immiscible shear flow. Transport inside the drop can play a crucial role in cleaning applications. Internal advection can enhance the mass transfer across the drop surface, thus increasing the cleaning rate. We used microlitre water-glycerol drops on a hydrophobic substrate. The drops were spherical and did not deform significantly under the shear flow. An oil phase of relative viscosity 0.01 to 1 was flowed over the drop. Typical Reynolds numbers inside the drops were of the order of 0.1 to 10. Using confocal microscopy, we performed 3D tomographic reconstruction of the flow field in the drop. The in-plane velocity field was measured using micro-PIV, and the third velocity component was computed from incompressibility. To our knowledge, this study gives the first experimental measurement of the three-dimensional internal velocity field of a drop in a shear flow. Numerical simulations and theoretical models published in the past 30 years predict a toroidal internal recirculation flow, for which the entire surface flows streamwise. However, our measurements reveal a qualitatively different picture with a two-lobed recirculation, featuring two stagnation points at the surface and a reverse surface flow closer to the substrate. This finding appears to be independent of Reynolds number and viscosity ratio in the ranges studied; we conjecture that the observed flow is due to the effect of surfactants at the drop surface.

  2. Enabling 3D-Liver Perfusion Mapping from MR-DCE Imaging Using Distributed Computing.

    PubMed

    Leporq, Benjamin; Camarasu-Pop, Sorina; Davila-Serrano, Eduardo E; Pilleul, Frank; Beuf, Olivier

    2013-01-01

    An MR acquisition protocol and a processing method using distributed computing on the European Grid Infrastructure (EGI) to allow 3D liver perfusion parametric mapping after Magnetic Resonance Dynamic Contrast Enhanced (MR-DCE) imaging are presented. Seven patients (one healthy control and six with chronic liver diseases) were prospectively enrolled after liver biopsy. MR-dynamic acquisition was continuously performed in free-breathing during two minutes after simultaneous intravascular contrast agent (MS-325 blood pool agent) injection. Hepatic capillary system was modeled by a 3-parameters one-compartment pharmacokinetic model. The processing step was parallelized and executed on the EGI. It was modeled and implemented as a grid workflow using the Gwendia language and the MOTEUR workflow engine. Results showed good reproducibility in repeated processing on the grid. The results obtained from the grid were well correlated with ROI-based reference method ran locally on a personal computer. The speed-up range was 71 to 242 with an average value of 126. In conclusion, distributed computing applied to perfusion mapping brings significant speed-up to quantification step to be used for further clinical studies in a research context. Accuracy would be improved with higher image SNR accessible on the latest 3T MR systems available today.

  3. Low velocity crustal flow and crust-mantle coupling mechanism in Yunnan, SE Tibet, revealed by 3D S-wave velocity and azimuthal anisotropy

    NASA Astrophysics Data System (ADS)

    Chen, Haopeng; Zhu, Liangbao; Su, Youjin

    2016-08-01

    We used teleseismic data recorded by a permanent seismic network in Yunnan, SE Tibet, and measured the interstation Rayleigh wave phase velocity between 10 and 60 s. A two-step inversion scheme was used to invert for the 3D S-wave velocity and azimuthal anisotropy structure of 10-110 km. The results show that there are two low velocity channels between depths of 20-30 km in Yunnan and that the fast axes are sub-parallel to the strikes of the low velocity channels, which supports the crustal flow model. The azimuthal anisotropy pattern is quite complicated and reveals a complex crust-mantle coupling mechanism in Yunnan. The N-S trending Lüzhijiang Fault separates the Dianzhong Block into two parts. In the western Dianzhong Block, the fast axis of the S-wave changes with depth, which indicates that the crust and the lithospheric mantle are decoupled. In the eastern Dianzhong Block and the western Yangtze Craton, the crust and the lithospheric mantle may be decoupled because of crustal flow, despite a coherent S-wave fast axis at depths of 10-110 km. In addition, the difference between the S-wave fast axis in the lithosphere and the SKS splitting measurement suggests that the lithosphere and the upper mantle are decoupled there. In the Baoshan Block, the stratified anisotropic pattern suggests that the crust and the upper mantle are decoupled.

  4. A compact single-camera system for high-speed, simultaneous 3-D velocity and temperature measurements.

    SciTech Connect

    Lu, Louise; Sick, Volker; Frank, Jonathan H.

    2013-09-01

    The University of Michigan and Sandia National Laboratories collaborated on the initial development of a compact single-camera approach for simultaneously measuring 3-D gasphase velocity and temperature fields at high frame rates. A compact diagnostic tool is desired to enable investigations of flows with limited optical access, such as near-wall flows in an internal combustion engine. These in-cylinder flows play a crucial role in improving engine performance. Thermographic phosphors were proposed as flow and temperature tracers to extend the capabilities of a novel, compact 3D velocimetry diagnostic to include high-speed thermometry. Ratiometric measurements were performed using two spectral bands of laser-induced phosphorescence emission from BaMg2Al10O17:Eu (BAM) phosphors in a heated air flow to determine the optimal optical configuration for accurate temperature measurements. The originally planned multi-year research project ended prematurely after the first year due to the Sandia-sponsored student leaving the research group at the University of Michigan.

  5. First 3D thermal mapping of an active volcano using an advanced photogrammetric method

    NASA Astrophysics Data System (ADS)

    Antoine, Raphael; Baratoux, David; Lacogne, Julien; Lopez, Teodolina; Fauchard, Cyrille; Bretar, Frédéric; Arab-Sedze, Mélanie; Staudacher, Thomas; Jacquemoud, Stéphane; Pierrot-Deseilligny, Marc

    2014-05-01

    Thermal infrared data obtained in the [7-14 microns] spectral range are usually used in many Earth Science disciplines. These studies are exclusively based on the analysis of 2D information. In this case, a quantitative analysis of the surface energy budget remains limited, as it may be difficult to estimate the radiative contribution of the topography, the thermal influence of winds on the surface or potential imprints of subsurface flows on the soil without any precise DEM. The draping of a thermal image on a recent DEM is a common method to obtain a 3D thermal map of a surface. However, this method has many disadvantages i) errors can be significant in the orientation process of the thermal images, due to the lack of tie points between the images and the DEM; ii) the use of a recent DEM implies the use of another remote sensing technique to quantify the topography; iii) finally, the characterization of the evolution of a surface requires the simultaneous acquisition of thermal data and topographic information, which may be expensive in most cases. The stereophotogrammetry method allows to reconstitute the relief of an object from photos taken from different positions. Recently, substantial progress have been realized in the generation of high spatial resolution topographic surfaces using stereophotogrammetry. However, the presence of shadows, homogeneous textures and/or weak contrasts in the visible spectrum (e.g., flowing lavas, uniform lithologies) may prevent from the use of such method, because of the difficulties to find tie points on each image. Such situations are more favorable in the thermal infrared spectrum, as any variation in the thermal properties or geometric orientation of the surfaces may induce temperature contrasts that are detectable with a thermal camera. This system, usually functioning with a array sensor (Focal Plane Array) and an optical device, have geometric characteristics that are similar to digital cameras. Thus, it may be possible

  6. Developed Design for Humeral Head Replacement Using 3D Surface Mapping

    NASA Astrophysics Data System (ADS)

    Salah, H. R.

    2014-12-01

    Assessment of dimensional and geometrical data on the humeral head replacement (HHR) objects is essential for solving the relevant designing problems in the physics of reverse engineering (RE). In this work, 2D-assessment for human humerus was performed using the computed tomography (CT) technique within the RE plan, after which the 2D images of humeral objects were converted into 3D images. The conversion was successful and indicated a clear difference in the 2D and 3D estimates of sizes and geometry of the humerus. The authors have analyzed and confirmed experimentally the statistical information on the relevant anatomical objects. The results of finite-element simulation of the compressive stresses affecting the geometry of 3D surface mapping were analyzed using SolidWorks software. For developing the biomechanical design of an HHR object suitable biomaterials were selected, and different metal-based biomaterials are discussed as applied at various loads. New methodology is presented for the size estimation of humeral head - both anatomical and artificial - in 3D-shape. A detailed interpretation is given for the results of CT D-measurements. Izmēru un ģeometrisko datu novērtējums, kas attiecas uz pleca kaula galviņas nomaiņas (PKGN) objektiem, nepieciešams, lai risinātu virkni reversīvās inženierijas (RI) problēmu. Šajā darbā cilvēka pleca kaula galviņas divdimensiju novērtējums tika veikts ar datortomogrāfijas palīdzību (RI) ietvaros, un pēc tam objekta divdimensiju attēlojums tika pārveidots trīsdimensiju. Pārveidojums bija sekmīgs, parādot pleca kaula galviņas izmēru un ģeometrijas atšķirības starp 2D un 3D novērtējumiem. Autori izanalizēja un eksperimentāli apstiprināja statistisko informāciju pēc dotā veida anatomiskiem objektiem. Saspiešanas sasprindzinājumi, kuri ietekmē trīsdimensiju virsmas attēlojuma ģeometriju, tika analizēti ar gala-elementu simulācijas metodi, lietojot programmu Solid

  7. Calculation of the nuclear material inventory in a sealed vault by 3D radiation mapping

    SciTech Connect

    Adsley, Ian; Klepikov, Alexander; Tur, Yevgeniy; Wells, David

    2013-07-01

    The paper relates to the determination of the amount of nuclear material contained in a closed, concrete lined vault at the Aktau fast breeder reactor in Kazakhstan. This material had been disposed into the vault after examination in an experimental hot cell directly above the vault. In order to comply with IAEA Safeguards requirements it was necessary to determine the total quantities of nuclear materials - enriched uranium and plutonium - that were held with Kazakhstan. Although it was possible to determine the inventory of all of the accessible nuclear material - the quantity remaining in the vault was unknown. As part of the Global Threat Reduction Programme the UK Government funded a project to determine the inventory of these nuclear materials in this vault. This involved drilling three penetrations through the concrete lined roof of the vault; this enabled the placement of lights and a camera into the vault through two penetrations; while the third penetration enabled a lightweight manipulator arm to be introduced into the vault. This was used to provide a detailed 3D mapping of the dose rate within the vault and it also enabled the collection of samples for radionuclide analysis. The deconvolution of the 3D dose rate profile within the vault enabled the determination of the gamma emitting source distribution on the floor and walls of the vault. The samples were analysed to determine the fingerprint of those radionuclides producing the gamma dose - namely {sup 137}Cs and {sup 60}Co - to the nuclear materials. The combination of the dose rate source terms on the surfaces of the vault and the fingerprint then enabled the quantities of nuclear materials to be determined. The project was a major success and enabled the Kazakhstan Government to comply with IAEA Safeguards requirements. It also enabled the UK DECC Ministry to develop a technology of national (and international) use. Finally the technology was well received by IAEA Safeguards as an acceptable

  8. 3D mapping of airway wall thickening in asthma with MSCT: a level set approach

    NASA Astrophysics Data System (ADS)

    Fetita, Catalin; Brillet, Pierre-Yves; Hartley, Ruth; Grenier, Philippe A.; Brightling, Christopher

    2014-03-01

    Assessing the airway wall thickness in multi slice computed tomography (MSCT) as image marker for airway disease phenotyping such asthma and COPD is a current trend and challenge for the scientific community working in lung imaging. This paper addresses the same problem from a different point of view: considering the expected wall thickness-to-lumen-radius ratio for a normal subject as known and constant throughout the whole airway tree, the aim is to build up a 3D map of airway wall regions of larger thickness and to define an overall score able to highlight a pathological status. In this respect, the local dimension (caliber) of the previously segmented airway lumen is obtained on each point by exploiting the granulometry morphological operator. A level set function is defined based on this caliber information and on the expected wall thickness ratio, which allows obtaining a good estimate of the airway wall throughout all segmented lumen generations. Next, the vascular (or mediastinal dense tissue) contact regions are automatically detected and excluded from analysis. For the remaining airway wall border points, the real wall thickness is estimated based on the tissue density analysis in the airway radial direction; thick wall points are highlighted on a 3D representation of the airways and several quantification scores are defined. The proposed approach is fully automatic and was evaluated (proof of concept) on a patient selection coming from different databases including mild, severe asthmatics and normal cases. This preliminary evaluation confirms the discriminative power of the proposed approach regarding different phenotypes and is currently extending to larger cohorts.

  9. Solar Wind Heating as Revealed from the Variation of 3D Ion Velocity Distributions across the Magnetic Reconnection Exhaust Region

    NASA Astrophysics Data System (ADS)

    He, J.

    2015-12-01

    Magnetic reconnection within current sheet has been regarded as one of the crucial dissipation and heating processes of coherent structures in the solar wind turbulence. Counter-streaming of ions is an important phenomenon in the reconnection exhaust region ranged from the ion diffusion region to the extended outflow region. It has been suggested by theoretical and numerical models that the ions are going to be picked up by the ejecting magnetic field and show larger T_perpendicular than T_parallel, if the guide field is strong enough (in other word, the shear angle is relatively low). The pick-up behavior seems to favor the heating of heavy ions with high mass-to-charge ratio, since the high M/Q ions have larger gyro-period/transit-time and tend to be non-adiabatic more easily. The above statements from theoretical models have not been thoroughly testified in the solar wind observations, though the changes in total temperature and 1D reduced velocity distribution function had been studied. Until now, it remains unclear about the difference of full 3D velocity distribution for the proton and helium ions between the upstream and the exhaust regions. Here, we will analyze the plasma measurement data from WIND/3DP to explore and compare the parallel and perpendicular heating effect of different species of ions. As a preliminary result, the proton is found to show bi-directional streams in its velocity distribution in some reconnection exhaust regions. The thermalization of the counter-streaming protons will be presented. The relation between proton T_parallel/T_perpendicular and guide field strength (or shear angle) will be studied. The velocity distributions of helium ions will be illustrated, which shows the difference of heating effect between different M/Q ratios.

  10. Hot deformation characterization of duplex low-density steel through 3D processing map development

    SciTech Connect

    Mohamadizadeh, A.; Zarei-Hanzaki, A.; Abedi, H.R.; Mehtonen, S.; Porter, D.

    2015-09-15

    The high temperature deformation behavior of duplex low-density Fe–18Mn–8Al–0.8C steel was investigated at temperatures in the range of 600–1000 °C. The primary constitutive analysis indicated that the Zener–Hollomon parameter, which represents the coupled effects of temperature and strain rate, significantly varies with the amount of deformation. Accordingly, the 3D processing maps were developed considering the effect of strain and were used to determine the safe and unsafe deformation conditions in association with the microstructural evolution. The deformation at efficiency domain I (900–1100 °C\\10{sup −} {sup 2}–10{sup −} {sup 3} s{sup −} {sup 1}) was found to be safe at different strains due to the occurrence of dynamic recrystallization in austenite. The safe efficiency domain II (700–900 °C\\1–10{sup −} {sup 1} s{sup −} {sup 1}), which appeared at logarithmic strain of 0.4, was characterized by deformation induced ferrite formation. Scanning electron microscopy revealed that the microband formation and crack initiation at ferrite\\austenite interphases were the main causes of deformation instability at 600–800 °C\\10{sup −} {sup 2}–10{sup −} {sup 3} s{sup −} {sup 1}. The degree of instability was found to decrease by increasing the strain due to the uniformity of microbanded structure obtained at higher strains. The shear band formation at 900–1100 °C\\1–10{sup −} {sup 1} s{sup −} {sup 1} was verified by electron backscattered diffraction. The local dynamic recrystallization of austenite and the deformation induced ferrite formation were observed within shear-banded regions as the results of flow localization. - Graphical abstract: Display Omitted - Highlights: • The 3D processing map is developed for duplex low-density Fe–Mn–Al–C steel. • The efficiency domains shrink, expand or appear with increasing strain. • The occurrence of DRX and DIFF increases the power efficiency. • Crack initiation

  11. Seismicity patterns along the Ecuadorian subduction zone: new constraints from earthquake location in a 3-D a priori velocity model

    NASA Astrophysics Data System (ADS)

    Font, Yvonne; Segovia, Monica; Vaca, Sandro; Theunissen, Thomas

    2013-04-01

    To improve earthquake location, we create a 3-D a priori P-wave velocity model (3-DVM) that approximates the large velocity variations of the Ecuadorian subduction system. The 3-DVM is constructed from the integration of geophysical and geological data that depend on the structural geometry and velocity properties of the crust and the upper mantle. In addition, specific station selection is carried out to compensate for the high station density on the Andean Chain. 3-D synthetic experiments are then designed to evaluate the network capacity to recover the event position using only P arrivals and the MAXI technique. Three synthetic earthquake location experiments are proposed: (1) noise-free and (2) noisy arrivals used in the 3-DVM, and (3) noise-free arrivals used in a 1-DVM. Synthetic results indicate that, under the best conditions (exact arrival data set and 3-DVM), the spatiotemporal configuration of the Ecuadorian network can accurately locate 70 per cent of events in the frontal part of the subduction zone (average azimuthal gap is 289° ± 44°). Noisy P arrivals (up to ± 0.3 s) can accurately located 50 per cent of earthquakes. Processing earthquake location within a 1-DVM almost never allows accurate hypocentre position for offshore earthquakes (15 per cent), which highlights the role of using a 3-DVM in subduction zone. For the application to real data, the seismicity distribution from the 3-D-MAXI catalogue is also compared to the determinations obtained in a 1-D-layered VM. In addition to good-quality location uncertainties, the clustering and the depth distribution confirm the 3-D-MAXI catalogue reliability. The pattern of the seismicity distribution (a 13 yr record during the inter-seismic period of the seismic cycle) is compared to the pattern of rupture zone and asperity of the Mw = 7.9 1942 and the Mw = 7.7 1958 events (the Mw = 8.8 1906 asperity patch is not defined). We observe that the nucleation of 1942, 1958 and 1906 events coincides with

  12. 3-D P- and S-wave velocity structure and low-frequency earthquake locations in the Parkfield, California region

    NASA Astrophysics Data System (ADS)

    Zeng, Xiangfang; Thurber, Clifford H.; Shelly, David R.; Harrington, Rebecca M.; Cochran, Elizabeth S.; Bennington, Ninfa L.; Peterson, Dana; Guo, Bin; McClement, Kara

    2016-09-01

    To refine the 3-D seismic velocity model in the greater Parkfield, California region, a new data set including regular earthquakes, shots, quarry blasts and low-frequency earthquakes (LFEs) was assembled. Hundreds of traces of each LFE family at two temporary arrays were stacked with time-frequency domain phase weighted stacking method to improve signal-to-noise ratio. We extend our model resolution to lower crustal depth with LFE data. Our result images not only previously identified features but also low velocity zones (LVZs) in the area around the LFEs and the lower crust beneath the southern Rinconada Fault. The former LVZ is consistent with high fluid pressure that can account for several aspects of LFE behaviour. The latter LVZ is consistent with a high conductivity zone in magnetotelluric studies. A new Vs model was developed with S picks that were obtained with a new autopicker. At shallow depth, the low Vs areas underlie the strongest shaking areas in the 2004 Parkfield earthquake. We relocate LFE families and analyse the location uncertainties with the NonLinLoc and tomoDD codes. The two methods yield similar results.

  13. 3-D P- and S-wave velocity structure and low-frequency earthquake locations in the Parkfield, California region

    USGS Publications Warehouse

    Zeng, Xiangfang; Thurber, Clifford H.; Shelly, David R.; Harrington, Rebecca M.; Cochran, Elizabeth S.; Bennington, Ninfa L.; Peterson, Dana; Guo, Bin; McClement, Kara

    2016-01-01

    To refine the 3-D seismic velocity model in the greater Parkfield, California region, a new data set including regular earthquakes, shots, quarry blasts and low-frequency earthquakes (LFEs) was assembled. Hundreds of traces of each LFE family at two temporary arrays were stacked with time–frequency domain phase weighted stacking method to improve signal-to-noise ratio. We extend our model resolution to lower crustal depth with LFE data. Our result images not only previously identified features but also low velocity zones (LVZs) in the area around the LFEs and the lower crust beneath the southern Rinconada Fault. The former LVZ is consistent with high fluid pressure that can account for several aspects of LFE behaviour. The latter LVZ is consistent with a high conductivity zone in magnetotelluric studies. A new Vs model was developed with S picks that were obtained with a new autopicker. At shallow depth, the low Vs areas underlie the strongest shaking areas in the 2004 Parkfield earthquake. We relocate LFE families and analyse the location uncertainties with the NonLinLoc and tomoDD codes. The two methods yield similar results.

  14. Hypocenter relocation using a fast grid search method and a 3-D seismic velocity model for the Sumatra region

    SciTech Connect

    Nugroho, Hendro; Widiyantoro, Sri; Nugraha, Andri Dian

    2013-09-09

    Determination of earthquake hypocenter in Indonesia conducted by the Meteorological, Climatological, and Geophysical Agency (MCGA) has still used a 1-D seismic velocity model. In this research, we have applied a Fast Grid Search (FGM) method and a 3-D velocity model resulting from tomographic imaging to relocate earthquakes in the Sumatran region. The data were taken from the MCGA data catalog from 2009 to 2011 comprising of subduction zone and on land fault earthquakes with magnitude greater than 4 Mw. Our preliminary results show some significant changes in the depths of the relocated earthquakes which are in general deeper than the depths of hypocenters from the MCGA data catalog. The residual times resulting from the relocation process are smaller than those prior to the relocation. Encouraged by these results, we will continue to conduct hypocenter relocation for all events from the MCGA data catalog periodically in order to produce a new data catalog with good quality. We hope that the new data catalog will be useful for further studies.

  15. New non-Doppler remote sensing technique for 3D wind field mapping

    NASA Astrophysics Data System (ADS)

    Belen'kii, Mikhail S.; Gimmestad, Gary G.; Gurvich, Alexander V.

    1994-06-01

    A new approach to the statistical analysis of fluctuating, photon-limited signals that permits us to accumulate and process the lidar returns without averaging of the reflected energy fluctuations is developed. This approach requires recording the photocounts for each pulse in a series of pulses and then determining photocount statistics. Based on the semiclassical theory of photodetection and Mandel's formula, a relationship has been obtained between the time-space cross correlation function and the cross spectrum of the lidar returns and corresponding photocount statistics. It is shown that the relative uncertainties of measuring the cross correlation or the cross spectrum of the lidar returns is determined by the general number of photocounts, but not by their mean value. A fast-scanning lidar system, which is based on a new photocounting analysis approach, is described for 3D wind field mapping in the atmosphere at altitudes up to 5 km. A program for the experimental verification of the new approach is presented.

  16. Inferring functional constraints and divergence in protein families using 3D mapping of phylogenetic information

    PubMed Central

    Blouin, Christian; Boucher, Yan; Roger, Andrew J.

    2003-01-01

    Comparative sequence analysis has been used to study specific questions about the structure and function of proteins for many years. Here we propose a knowledge-based framework in which the maximum likelihood rate of evolution is used to quantify the level of constraint on the identity of a site. We demonstrate that site-rate mapping on 3D structures using datasets of rhodopsin-like G-protein receptors and α- and β-tubulins provides an excellent tool for pinpointing the functional features shared between orthologous and paralogous proteins. In addition, functional divergence within protein families can be inferred by examining the differences in the site rates, the differences in the chemical properties of the side chains or amino acid usage between aligned sites. Two novel analytical methods are introduced to characterize rate- independent functional divergence. These are tested using a dataset of two classes of HMG-CoA reductases for which only one class can perform both the forward and reverse reaction. We show that functionally divergent sites occur in a cluster of sites interacting with the catalytic residues and that this information should facilitate the design of experimental strategies to directly test functional properties of residues. PMID:12527789

  17. Inferring functional constraints and divergence in protein families using 3D mapping of phylogenetic information.

    PubMed

    Blouin, Christian; Boucher, Yan; Roger, Andrew J

    2003-01-15

    Comparative sequence analysis has been used to study specific questions about the structure and function of proteins for many years. Here we propose a knowledge-based framework in which the maximum likelihood rate of evolution is used to quantify the level of constraint on the identity of a site. We demonstrate that site-rate mapping on 3D structures using datasets of rhodopsin-like G-protein receptors and alpha- and beta-tubulins provides an excellent tool for pinpointing the functional features shared between orthologous and paralogous proteins. In addition, functional divergence within protein families can be inferred by examining the differences in the site rates, the differences in the chemical properties of the side chains or amino acid usage between aligned sites. Two novel analytical methods are introduced to characterize rate- independent functional divergence. These are tested using a dataset of two classes of HMG-CoA reductases for which only one class can perform both the forward and reverse reaction. We show that functionally divergent sites occur in a cluster of sites interacting with the catalytic residues and that this information should facilitate the design of experimental strategies to directly test functional properties of residues.

  18. 3-D modeling useful tool for planning. [mapping groundwater and soil pollution and subsurface features

    SciTech Connect

    Calmbacher, C.W. )

    1992-12-01

    Visualizing and delineating subsurface geological features, groundwater contaminant plumes, soil contamination, geological faults, shears and other features can prove invaluable to environmental consultants, engineers, geologists and hydrogeologists. Three-dimensional modeling is useful for a variety of applications from planning remediation to site planning design. The problem often is figuring out how to convert drilling logs, map lists or contaminant levels from soil and groundwater into a 3-D model. Three-dimensional subsurface modeling is not a new requirement, but a flexible, easily applied method of developing such models has not always been readily available. LYNX Geosystems Inc. has developed the Geoscience Modeling System (GMS) in answer to the needs of those regularly having to do three-dimensional geostatistical modeling. The GMS program has been designed to allow analysis, interpretation and visualization of complex geological features and soil and groundwater contamination. This is a powerful program driven by a 30 volume modeling technology engine. Data can be entered, stored, manipulated and analyzed in ways that will present very few limitations to the user. The program has selections for Geoscience Data Management, Geoscience Data Analysis, Geological Modeling (interpretation and analysis), Geostatistical Modeling and an optional engineering component.

  19. Euro-Maps 3D- A Transnational, High-Resolution Digital Surface Model For Europe

    NASA Astrophysics Data System (ADS)

    Uttenthaler, A.; Barner, F.; Hass, T.; Makiola, J.; d'Angelo, P.; Reinartz, P.; Carl, S.; Steiner, K.

    2013-12-01

    Euro-Maps 3D is a homogeneous 5 m spaced digital surface model (DSM) semi-automatically derived by Euromap from 2.5 m in-flight stereo data provided by the Indian IRS-P5 Cartosat-1 satellite. This new and innovative product has been developed in close co- operation with the Remote Sensing Technology Institute (IMF) of the German Aerospace Center (DLR) and is being jointly exploited. The very detailed and accurate representation of the surface is achieved by using a sophisticated and well adapted algorithm implemented on the basis of the Semi-Global Matching approach. In addition, the final product includes detailed flanking information consisting of several pixel-based quality and traceability layers also including an ortho layer. The product is believed to provide maximum accuracy and transparency. The DSM product meets and exceeds HRE80 qualification standards. The DSM product will be made available transnational in a homogeneous quality for most parts of Europe, North Africa and Turkey by Euromap step-by-step. Other areas around the world are processed on demand.

  20. 3-D pain drawings and seating pressure maps: relationships and challenges.

    PubMed

    Spyridonis, Fotios; Ghinea, Gheorghita

    2011-05-01

    Mobility impaired people constitute a significant portion of the adult population, which often experience back pain at some point during their lifetime. Such pain is usually characterized by severe implications reflected on both their personal lives, as well as on a country's health and economic systems. The traditional 2-D representations of the human body often used can be limited in their ability to efficiently visualize such pain for diagnosis purposes. Yet, patients have been shown to prefer such drawings. However, considering that pain is a feeling or emotion that is subjective in nature, the pain drawings could be consequently regarded as a subjective means of communicating such pain. As a result, the study described in this paper proposes an alternative, which encompasses a 3-D pain visualization solution, developed in a previous work of ours. This alternative is complemented with the upcoming technique of pressure mapping for more objectivity in the pain data collection. The results of this study have shown that the proposed approach is a promising solution for the purpose intended, and it could generally prove to be a significant complementary method in the area of medical practice for the mobility impaired community.

  1. Zemmouri earthquake rupture zone (Mw 6.8, Algeria): Aftershocks sequence relocation and 3D velocity model

    NASA Astrophysics Data System (ADS)

    Ayadi, A.; Dorbath, C.; Ousadou, F.; Maouche, S.; Chikh, M.; Bounif, M. A.; Meghraoui, M.

    2008-09-01

    We analyze the aftershocks sequence of the Zemmouri thrust faulting earthquake (21 May 2003, Mw 6.8) located east of Algiers in the Tell Atlas. The seismic sequence located during ˜2 months following the mainshock is made of more than 1500 earthquakes and extends NE-SW along a ˜60-km fault rupture zone crossing the coastline. The earthquake relocation was performed using handpicked P and S phases located with the tomoDD in a detailed 3D velocity structure of the epicentral area. Contrasts between velocity patches seem to correlate with contacts between granitic-volcanic basement rocks and the sedimentary formation of the eastern Mitidja basin. The aftershock sequence exhibits at least three seismic clouds and a well-defined SE-dipping main fault geometry that reflects the complex rupture. The distribution of seismic events presents a clear contrast between a dense SW zone and a NE zone with scattered aftershocks. We observe that the mainshock locates between the SW and NE seismic zones; it also lies at the NNS-SSE contact that separates a basement block to the east and sedimentary formations to the west. The aftershock distribution also suggests fault bifurcation at the SW end of the fault rupture, with a 20-km-long ˜N 100° trending seismic cluster, with a vertical fault geometry parallel to the coastline juxtaposed. Another aftershock cloud may correspond to 75° SE dipping fault. The fault geometry and related SW branches may illustrate the interference between pre-existing fault structures and the SW rupture propagation. The rupture zone, related kinematics, and velocity contrasts obtained from the aftershocks distribution are in agreement with the coastal uplift and reflect the characteristics of an active zone controlled by convergent movements at a plate boundary.

  2. Constructing a 3D Crustal Model Across the Entire Contiguous US Using Broadband Rayleigh Wave Phase Velocity and Ellipticity Measurements

    NASA Astrophysics Data System (ADS)

    Lin, F. C.; Schmandt, B.

    2015-12-01

    Imaging the crust and lithosphere structure beneath North America is one of the primary targets for the NSF-funded EarthScope project. In this study, we apply the recently developed ambient noise and surface wave tomography methods to construct a detailed 3D crustal model across the entire contiguous US using USArray data between January 2007 and May 2015. By using both Rayleigh wave phase velocity and ellipticity measurements between 8 and 100 sec period, the shear velocity structure can be well resolved within the five crustal layers we modeled: three upper crust, one middle crust, and one lower crust. Clear correlations are observed between the resolved velocity anomalies and known geological features at all depths. In the uppermost crust, slow Vs anomalies are observed within major sedimentary environments such as the Williston Basin, Denver Basin, and Mississippi embayment, and fast Vs anomalies are observed in environments with deeply exhumed bedrock outcrops at the surface including the Laurentian Highlands, Ouachita-Ozark Interior Highlands, and Appalachian Highlands. In the deeper upper crust, slow anomalies are observed in deep sedimentary basins such as the Green River Basin, Appalachian Basin, Southern Oklahoma Aulacogen, and areas surrounding the Gulf of Mexico. Fast anomalies, on the other hand, are observed in the Colorado Plateau, within the Great Plains between the Front Ranges and Midcontinental Rift, and east of the Appalachian Mountains. At this depth, the Midcontinental Rift and Grenville Front clearly correlate well with various velocity structure boundaries. In the middle crust, slow anomalies are mostly observed in the tectonically active areas in the western US, but relatively slow anomalies are also observed southeast of the Precambrian Rift Margins. At this depth, fast anomalies are observed beneath various deep sedimentary basins such as the Southern Oklahoma Aulacogen, Appalachian Basin, and Central Valley. In the lower crust, a clear

  3. Enhanced RGB-D Mapping Method for Detailed 3D Indoor and Outdoor Modeling

    PubMed Central

    Tang, Shengjun; Zhu, Qing; Chen, Wu; Darwish, Walid; Wu, Bo; Hu, Han; Chen, Min

    2016-01-01

    RGB-D sensors (sensors with RGB camera and Depth camera) are novel sensing systems that capture RGB images along with pixel-wise depth information. Although they are widely used in various applications, RGB-D sensors have significant drawbacks including limited measurement ranges (e.g., within 3 m) and errors in depth measurement increase with distance from the sensor with respect to 3D dense mapping. In this paper, we present a novel approach to geometrically integrate the depth scene and RGB scene to enlarge the measurement distance of RGB-D sensors and enrich the details of model generated from depth images. First, precise calibration for RGB-D Sensors is introduced. In addition to the calibration of internal and external parameters for both, IR camera and RGB camera, the relative pose between RGB camera and IR camera is also calibrated. Second, to ensure poses accuracy of RGB images, a refined false features matches rejection method is introduced by combining the depth information and initial camera poses between frames of the RGB-D sensor. Then, a global optimization model is used to improve the accuracy of the camera pose, decreasing the inconsistencies between the depth frames in advance. In order to eliminate the geometric inconsistencies between RGB scene and depth scene, the scale ambiguity problem encountered during the pose estimation with RGB image sequences can be resolved by integrating the depth and visual information and a robust rigid-transformation recovery method is developed to register RGB scene to depth scene. The benefit of the proposed joint optimization method is firstly evaluated with the publicly available benchmark datasets collected with Kinect. Then, the proposed method is examined by tests with two sets of datasets collected in both outside and inside environments. The experimental results demonstrate the feasibility and robustness of the proposed method. PMID:27690028

  4. Enhanced RGB-D Mapping Method for Detailed 3D Indoor and Outdoor Modeling.

    PubMed

    Tang, Shengjun; Zhu, Qing; Chen, Wu; Darwish, Walid; Wu, Bo; Hu, Han; Chen, Min

    2016-09-27

    RGB-D sensors (sensors with RGB camera and Depth camera) are novel sensing systems that capture RGB images along with pixel-wise depth information. Although they are widely used in various applications, RGB-D sensors have significant drawbacks including limited measurement ranges (e.g., within 3 m) and errors in depth measurement increase with distance from the sensor with respect to 3D dense mapping. In this paper, we present a novel approach to geometrically integrate the depth scene and RGB scene to enlarge the measurement distance of RGB-D sensors and enrich the details of model generated from depth images. First, precise calibration for RGB-D Sensors is introduced. In addition to the calibration of internal and external parameters for both, IR camera and RGB camera, the relative pose between RGB camera and IR camera is also calibrated. Second, to ensure poses accuracy of RGB images, a refined false features matches rejection method is introduced by combining the depth information and initial camera poses between frames of the RGB-D sensor. Then, a global optimization model is used to improve the accuracy of the camera pose, decreasing the inconsistencies between the depth frames in advance. In order to eliminate the geometric inconsistencies between RGB scene and depth scene, the scale ambiguity problem encountered during the pose estimation with RGB image sequences can be resolved by integrating the depth and visual information and a robust rigid-transformation recovery method is developed to register RGB scene to depth scene. The benefit of the proposed joint optimization method is firstly evaluated with the publicly available benchmark datasets collected with Kinect. Then, the proposed method is examined by tests with two sets of datasets collected in both outside and inside environments. The experimental results demonstrate the feasibility and robustness of the proposed method.

  5. 3D leaf water content mapping using terrestrial laser scanner backscatter intensity with radiometric correction

    NASA Astrophysics Data System (ADS)

    Zhu, Xi; Wang, Tiejun; Darvishzadeh, Roshanak; Skidmore, Andrew K.; Niemann, K. Olaf

    2015-12-01

    Leaf water content (LWC) plays an important role in agriculture and forestry management. It can be used to assess drought conditions and wildfire susceptibility. Terrestrial laser scanner (TLS) data have been widely used in forested environments for retrieving geometrically-based biophysical parameters. Recent studies have also shown the potential of using radiometric information (backscatter intensity) for estimating LWC. However, the usefulness of backscatter intensity data has been limited by leaf surface characteristics, and incidence angle effects. To explore the idea of using LiDAR intensity data to assess LWC we normalized (for both angular effects and leaf surface properties) shortwave infrared TLS data (1550 nm). A reflectance model describing both diffuse and specular reflectance was applied to remove strong specular backscatter intensity at a perpendicular angle. Leaves with different surface properties were collected from eight broadleaf plant species for modeling the relationship between LWC and backscatter intensity. Reference reflectors (Spectralon from Labsphere, Inc.) were used to build a look-up table to compensate for incidence angle effects. Results showed that before removing the specular influences, there was no significant correlation (R2 = 0.01, P > 0.05) between the backscatter intensity at a perpendicular angle and LWC. After the removal of the specular influences, a significant correlation emerged (R2 = 0.74, P < 0.05). The agreement between measured and TLS-derived LWC demonstrated a significant reduction of RMSE (root mean square error, from 0.008 to 0.003 g/cm2) after correcting for the incidence angle effect. We show that it is possible to use TLS to estimate LWC for selected broadleaved plants with an R2 of 0.76 (significance level α = 0.05) at leaf level. Further investigations of leaf surface and internal structure will likely result in improvements of 3D LWC mapping for studying physiology and ecology in vegetation.

  6. 3-D or median map? Earthquake scenario ground-motion maps from physics-based models versus maps from ground-motion prediction equations

    NASA Astrophysics Data System (ADS)

    Porter, K.

    2015-12-01

    There are two common ways to create a ground-motion map for a hypothetical earthquake: using ground motion prediction equations (by far the more common of the two) and using 3-D physics-based modeling. The former is very familiar to engineers, the latter much less so, and the difference can present a problem because engineers tend to trust the familiar and distrust novelty. Maps for essentially the same hypothetical earthquake using the two different methods can look very different, while appearing to present the same information. Using one or the other can lead an engineer or disaster planner to very different estimates of damage and risk. The reasons have to do with depiction of variability, spatial correlation of shaking, the skewed distribution of real-world shaking, and the upward-curving relationship between shaking and damage. The scientists who develop the two kinds of map tend to specialize in one or the other and seem to defend their turf, which can aggravate the problem of clearly communicating with engineers.The USGS Science Application for Risk Reduction's (SAFRR) HayWired scenario has addressed the challenge of explaining to engineers the differences between the two maps, and why, in a disaster planning scenario, one might want to use the less-familiar 3-D map.

  7. Note: A simple method to suppress the artificial noise for velocity map imaging spectroscopy

    SciTech Connect

    Qin, Zhengbo E-mail: zctang@dicp.ac.cn; Li, Chunsheng; Qu, Zehua; Tang, Zichao E-mail: zctang@dicp.ac.cn

    2015-04-15

    A simple method has been proposed to suppress artificial noise from the counts with respect to the central line (or point) for the reconstructed 3D images with cylindrical symmetry in the velocity-map imaging spectroscopy. A raw 2D projection around the z-axis (usually referred to as central line) for photodetachment, photoionization, or photodissociation experiments is pre-processed via angular tailored method to avoid the signal counts distributed near the central line (or point). Two types of photoelectron velocity-map imaging (O{sup −} and Au{sup −} ⋅ NH{sub 3}) are demonstrated to give rise to the 3D images with significantly reduced central line noise after pre-processing operation. The major advantages of the pre-operation are the ability of suppression of central-line noise to resolve weak structures or vibrational excitation in atoms or molecules near photon threshold.

  8. Note: A simple method to suppress the artificial noise for velocity map imaging spectroscopy.

    PubMed

    Qin, Zhengbo; Li, Chunsheng; Qu, Zehua; Tang, Zichao

    2015-04-01

    A simple method has been proposed to suppress artificial noise from the counts with respect to the central line (or point) for the reconstructed 3D images with cylindrical symmetry in the velocity-map imaging spectroscopy. A raw 2D projection around the z-axis (usually referred to as central line) for photodetachment, photoionization, or photodissociation experiments is pre-processed via angular tailored method to avoid the signal counts distributed near the central line (or point). Two types of photoelectron velocity-map imaging (O(-) and Au(-)⋅NH3) are demonstrated to give rise to the 3D images with significantly reduced central line noise after pre-processing operation. The major advantages of the pre-operation are the ability of suppression of central-line noise to resolve weak structures or vibrational excitation in atoms or molecules near photon threshold.

  9. Can we trace the eastern Gondwanan margin in Australia? New perspectives from transdimensional inversion of ambient noise for 3D shear velocity structure

    NASA Astrophysics Data System (ADS)

    Pilia, S.; Rawlinson, N.; Direen, N. G.

    2013-12-01

    Although the notion of Rodinia is quite well accepted in the geoscience community, the location and nature of the eastern continental margin of the Gondwana fragment in Australia is still vague and remains one of the most hotly debated topics in Australian geology. Moreover, most post-Rodinian reconstructions models choose not to tackle the ';Tasmanian challenge', and focus only on the tectonic evolution of mainland southeast Australia, thereby conveniently ignoring the wider tectonic implications of Tasmania's complex geological history. One of the chief limitations of the tectonic reconstructions in this region is a lack of information on Paleozoic (possibly Proterozoic) basement structures. Vast Mesozoic-Cainozoic sedimentary and volcanic cover sequences obscure older outcrops and limit the power of direct observational techniques. In response to these challenges, our effort is focused on ambient seismic noise for imaging 3D crustal shear velocity structure using surface waves, which is capable of illuminating basement structure beneath younger cover. The data used in this study is sourced from the WOMBAT transportable seismic array, which is compounded by around 650 stations spanning the majority of southeastern Australia, including Tasmania and several islands in Bass Strait. To produce the highest quality Green's functions, careful processing of the data has been performed, after which group velocity dispersion measurements have been carried out using a frequency-time analysis method on the symmetric component of the empirical Green's functions (EGFs). Group dispersion measurements from the EGFs have been inverted using a novel hierarchical, transdimensional, Bayesian algorithm to obtain Rayleigh-wave group velocity maps at different periods from 2 to 30 s. The new approach has several advantages in that the number and distribution of model parameters are implicitly controlled by the data, in which the noise is treated as unknown in the inversion. This

  10. Depth maps from seismic velocities help Wilcox exploration

    SciTech Connect

    Guzman, C.E.; Ramaswamy, M.; Wright, B.K.; Lawler, K.P.

    1996-10-28

    Depth maps generated from a combination of time maps and maximum coherency seismic (MCS) velocities have proven useful in the Tertiary Wilcox play in Louisiana and Texas. Applied aggressively in conjunction with new processing techniques, depth maps generated in this fashion can identify prospects not visible on time maps. Since depth conversion depends on velocities, the method relies on precision velocity measurements derived from an event-oriented algorithm. The velocities are carefully analyzed for misties and then contoured within geologic boundaries. Well information, if any, is also incorporated into the velocity map, and then the time map is converted to a depth map. Two case studies presented here calibrate the method. Other examples show how the technique helped locate a drill-site and predict geologic horizon depth and how it identified a structure not visible on time maps. The paper discusses Wilcox characteristics, the depth-conversion method, constant-velocity calibration, varying-velocity calibration, two applications, and coarse lithology prediction.

  11. Label-free characterization of white blood cells by measuring 3D refractive index maps

    PubMed Central

    Yoon, Jonghee; Kim, Kyoohyun; Park, HyunJoo; Choi, Chulhee; Jang, Seongsoo; Park, YongKeun

    2015-01-01

    The characterization of white blood cells (WBCs) is crucial for blood analyses and disease diagnoses. However, current standard techniques rely on cell labeling, a process which imposes significant limitations. Here we present three-dimensional (3D) optical measurements and the label-free characterization of mouse WBCs using optical diffraction tomography. 3D refractive index (RI) tomograms of individual WBCs are constructed from multiple two-dimensional quantitative phase images of samples illuminated at various angles of incidence. Measurements of the 3D RI tomogram of WBCs enable the separation of heterogeneous populations of WBCs using quantitative morphological and biochemical information. Time-lapse tomographic measurements also provide the 3D trajectory of micrometer-sized beads ingested by WBCs. These results demonstrate that optical diffraction tomography can be a useful and versatile tool for the study of WBCs. PMID:26504637

  12. a Review of Cooling Road Maps for 3d Chip Packages

    NASA Astrophysics Data System (ADS)

    Agonafer, Dereje

    The microelectronics industry has thrived through dimensional scaling and corresponding reduction in cost and increase in performance. It has been reported that the average selling price of a transistor has reduced from a few dollars in the early 50's to a billionth of a dollar in the early 2000. It has, however, become more difficult to sustain reduction in cost by scaling. Also, while new technology nodes results in reduced gate delay, it also effects an increase in the interconnect delay. One approach to delaying new technology node and improving performance is through reduction in interconnect delay through packaging. In particular, 3-D Through-Silicon-Via (3D TSV) technology is emerging as a powerful technology to reduce package footprint, decrease interconnection power, higher frequencies, and provide efficient integration of heterogeneous devices. TSVs provide high speed signal propagation due to reduced interconnect lengths as compared to wirebonding and SOC (system-on-chip). However, with many advantages of 3D ICs over conventional 2D counterpart, there are some inherent thermal-mechanical-electrical challenges that need to be addressed before 3D ICs could become mainstream. This chapter talks about a few of the 3D TSV IC challenges from the thermal, mechanical and the performance standpoint of view. It also discusses a novel technique for high powered 3D IC cooling to sub-ambient temperatures using thermo-electric cooler (TEC).

  13. 3D Euler equations and ideal MHD mapped to regular systems: Probing the finite-time blowup hypothesis

    NASA Astrophysics Data System (ADS)

    Bustamante, Miguel D.

    2011-06-01

    We prove by an explicit construction that solutions to incompressible 3D Euler equations defined in the periodic cube Ω=[0 can be mapped bijectively to a new system of equations whose solutions are globally regular. We establish that the usual Beale-Kato-Majda criterion for finite-time singularity (or blowup) of a solution to the 3D Euler system is equivalent to a condition on the corresponding regular solution of the new system. In the hypothetical case of Euler finite-time singularity, we provide an explicit formula for the blowup time in terms of the regular solution of the new system. The new system is amenable to being integrated numerically using similar methods as in Euler equations. We propose a method to simulate numerically the new regular system and describe how to use this to draw robust and reliable conclusions on the finite-time singularity problem of Euler equations, based on the conservation of quantities directly related to energy and circulation. The method of mapping to a regular system can be extended to any fluid equation that admits a Beale-Kato-Majda type of theorem, e.g. 3D Navier-Stokes, 2D and 3D magnetohydrodynamics, and 1D inviscid Burgers. We discuss briefly the case of 2D ideal magnetohydrodynamics. In order to illustrate the usefulness of the mapping, we provide a thorough comparison of the analytical solution versus the numerical solution in the case of 1D inviscid Burgers equation.

  14. Advances in animal ecology from 3D ecosystem mapping with LiDAR

    NASA Astrophysics Data System (ADS)

    Davies, A.; Asner, G. P.

    2015-12-01

    The advent and recent advances of Light Detection and Ranging (LiDAR) have enabled accurate measurement of 3D ecosystem structure. Although the use of LiDAR data is widespread in vegetation science, it has only recently (< 14 years) been applied to animal ecology. Despite such recent application, LiDAR has enabled new insights in the field and revealed the fundamental importance of 3D ecosystem structure for animals. We reviewed the studies to date that have used LiDAR in animal ecology, synthesising the insights gained. Structural heterogeneity is most conducive to increased animal richness and abundance, and increased complexity of vertical vegetation structure is more positively influential than traditionally measured canopy cover, which produces mixed results. However, different taxonomic groups interact with a variety of 3D canopy traits and some groups with 3D topography. LiDAR technology can be applied to animal ecology studies in a wide variety of environments to answer an impressive array of questions. Drawing on case studies from vastly different groups, termites and lions, we further demonstrate the applicability of LiDAR and highlight new understanding, ranging from habitat preference to predator-prey interactions, that would not have been possible from studies restricted to field based methods. We conclude with discussion of how future studies will benefit by using LiDAR to consider 3D habitat effects in a wider variety of ecosystems and with more taxa to develop a better understanding of animal dynamics.

  15. True-3D Strain Mapping for Assessment of Material Deformation by Synchrotron X-Ray Microtomography

    SciTech Connect

    Ahn, J.J.; Toda, H.; Niinomi, M.; Kobayashi, T.; Akahori, T.; Uesugi, K.

    2005-04-09

    Downsizing of products with complex shapes has been accelerated thanks to the rapid development of electrodevice manufacturing technology. Micro electromechanical systems (MEMS) are one of such typical examples. 3D strain measurement of such miniature products is needed to ensure their reliability. In the present study, as preliminary trial for it 3D tensile deformation behavior of a pure aluminum wire is examined using the synchrotron X-ray microtomography technique at Spring-8, Japan. Multipurpose in-situ tester is used to investigate real-time tensile deformation behavior of the Al wire. Tensile tests are carried out under strokes of 0, 0.005, 0.01 and 0.015mm. It measures 3D local deformation of a region of interest by tracking a relative movement of a pair of particles at each point. Local deformation behavior of the Al wire is identified to be different from macroscopic deformation behavior. It may be closely associated with underlying microstructure.

  16. Edge-based intramode selection for depth-map coding in 3D-HEVC.

    PubMed

    Park, Chun-Su

    2015-01-01

    The 3D video extension of High Efficiency Video Coding (3D-HEVC) is the state-of-the-art video coding standard for the compression of the multiview video plus depth format. In the 3D-HEVC design, new depth-modeling modes (DMMs) are utilized together with the existing intraprediction modes for depth intracoding. The DMMs can provide more accurate prediction signals and thereby achieve better compression efficiency. However, testing the DMMs in the intramode decision process causes a drastic increase in the computational complexity. In this paper, we propose a fast mode decision algorithm for depth intracoding. The proposed algorithm first performs a simple edge classification in the Hadamard transform domain. Then, based on the edge classification results, the proposed algorithm selectively omits unnecessary DMMs in the mode decision process. Experimental results demonstrate that the proposed algorithm speeds up the mode decision process by up to 37.65% with negligible loss of coding efficiency.

  17. GIS prospectivity mapping and 3D modeling validation for potential uranium deposit targets in Shangnan district, China

    NASA Astrophysics Data System (ADS)

    Xie, Jiayu; Wang, Gongwen; Sha, Yazhou; Liu, Jiajun; Wen, Botao; Nie, Ming; Zhang, Shuai

    2017-04-01

    Integrating multi-source geoscience information (such as geology, geophysics, geochemistry, and remote sensing) using GIS mapping is one of the key topics and frontiers in quantitative geosciences for mineral exploration. GIS prospective mapping and three-dimensional (3D) modeling can be used not only to extract exploration criteria and delineate metallogenetic targets but also to provide important information for the quantitative assessment of mineral resources. This paper uses the Shangnan district of Shaanxi province (China) as a case study area. GIS mapping and potential granite-hydrothermal uranium targeting were conducted in the study area combining weights of evidence (WofE) and concentration-area (C-A) fractal methods with multi-source geoscience information. 3D deposit-scale modeling using GOCAD software was performed to validate the shapes and features of the potential targets at the subsurface. The research results show that: (1) the known deposits have potential zones at depth, and the 3D geological models can delineate surface or subsurface ore-forming features, which can be used to analyze the uncertainty of the shape and feature of prospectivity mapping at the subsurface; (2) single geochemistry anomalies or remote sensing anomalies at the surface require combining the depth exploration criteria of geophysics to identify potential targets; and (3) the single or sparse exploration criteria zone with few mineralization spots at the surface has high uncertainty in terms of the exploration target.

  18. A mapping of an ensemble of mitochondrial sequences for various organisms into 3D space based on the word composition.

    PubMed

    Aita, Takuyo; Nishigaki, Koichi

    2012-11-01

    To visualize a bird's-eye view of an ensemble of mitochondrial genome sequences for various species, we recently developed a novel method of mapping a biological sequence ensemble into Three-Dimensional (3D) vector space. First, we represented a biological sequence of a species s by a word-composition vector x(s), where its length [absolute value]x(s)[absolute value] represents the sequence length, and its unit vector x(s)/[absolute value]x(s)[absolute value] represents the relative composition of the K-tuple words through the sequence and the size of the dimension, N=4(K), is the number of all possible words with the length of K. Second, we mapped the vector x(s) to the 3D position vector y(s), based on the two following simple principles: (1) [absolute value]y(s)[absolute value]=[absolute value]x(s)[absolute value] and (2) the angle between y(s) and y(t) maximally correlates with the angle between x(s) and x(t). The mitochondrial genome sequences for 311 species, including 177 Animalia, 85 Fungi and 49 Green plants, were mapped into 3D space by using K=7. The mapping was successful because the angles between vectors before and after the mapping highly correlated with each other (correlation coefficients were 0.92-0.97). Interestingly, the Animalia kingdom is distributed along a single arc belt (just like the Milky Way on a Celestial Globe), and the Fungi and Green plant kingdoms are distributed in a similar arc belt. These two arc belts intersect at their respective middle regions and form a cross structure just like a jet aircraft fuselage and its wings. This new mapping method will allow researchers to intuitively interpret the visual information presented in the maps in a highly effective manner.

  19. Joint 2D and 3D phase processing for quantitative susceptibility mapping: application to 2D echo-planar imaging.

    PubMed

    Wei, Hongjiang; Zhang, Yuyao; Gibbs, Eric; Chen, Nan-Kuei; Wang, Nian; Liu, Chunlei

    2017-04-01

    Quantitative susceptibility mapping (QSM) measures tissue magnetic susceptibility and typically relies on time-consuming three-dimensional (3D) gradient-echo (GRE) MRI. Recent studies have shown that two-dimensional (2D) multi-slice gradient-echo echo-planar imaging (GRE-EPI), which is commonly used in functional MRI (fMRI) and other dynamic imaging techniques, can also be used to produce data suitable for QSM with much shorter scan times. However, the production of high-quality QSM maps is difficult because data obtained by 2D multi-slice scans often have phase inconsistencies across adjacent slices and strong susceptibility field gradients near air-tissue interfaces. To address these challenges in 2D EPI-based QSM studies, we present a new data processing procedure that integrates 2D and 3D phase processing. First, 2D Laplacian-based phase unwrapping and 2D background phase removal are performed to reduce phase inconsistencies between slices and remove in-plane harmonic components of the background phase. This is followed by 3D background phase removal for the through-plane harmonic components. The proposed phase processing was evaluated with 2D EPI data obtained from healthy volunteers, and compared against conventional 3D phase processing using the same 2D EPI datasets. Our QSM results were also compared with QSM values from time-consuming 3D GRE data, which were taken as ground truth. The experimental results show that this new 2D EPI-based QSM technique can produce quantitative susceptibility measures that are comparable with those of 3D GRE-based QSM across different brain regions (e.g. subcortical iron-rich gray matter, cortical gray and white matter). This new 2D EPI QSM reconstruction method is implemented within STI Suite, which is a comprehensive shareware for susceptibility imaging and quantification. Copyright © 2016 John Wiley & Sons, Ltd.

  20. Fluorescent stereo microscopy for 3D surface profilometry and deformation mapping.

    PubMed

    Hu, Zhenxing; Luo, Huiyang; Du, Yingjie; Lu, Hongbing

    2013-05-20

    Recently, mechanobiology has received increased attention. For investigation of biofilm and cellular tissue, measurements of the surface topography and deformation in real-time are a pre-requisite for understanding the growth mechanisms. In this paper, a novel three-dimensional (3D) fluorescent microscopic method for surface profilometry and deformation measurements is developed. In this technique a pair of cameras are connected to a binocular fluorescent microscope to acquire micrographs from two different viewing angles of a sample surface doped or sprayed with fluorescent microparticles. Digital image correlation technique is used to search for matching points in the pairing fluorescence micrographs. After calibration of the system, the 3D surface topography is reconstructed from the pair of planar images. When the deformed surface topography is compared with undeformed topography using fluorescent microparticles for movement tracking of individual material points, the full field deformation of the surface is determined. The technique is demonstrated on topography measurement of a biofilm, and also on surface deformation measurement of the biofilm during growth. The use of 3D imaging of the fluorescent microparticles eliminates the formation of bright parts in an image caused by specular reflections. The technique is appropriate for non-contact, full-field and real-time 3D surface profilometry and deformation measurements of materials and structures at the microscale.

  1. 2D map projections for visualization and quantitative analysis of 3D fluorescence micrographs

    PubMed Central

    Sendra, G. Hernán; Hoerth, Christian H.; Wunder, Christian; Lorenz, Holger

    2015-01-01

    We introduce Map3-2D, a freely available software to accurately project up to five-dimensional (5D) fluorescence microscopy image data onto full-content 2D maps. Similar to the Earth’s projection onto cartographic maps, Map3-2D unfolds surface information from a stack of images onto a single, structurally connected map. We demonstrate its applicability for visualization and quantitative analyses of spherical and uneven surfaces in fixed and dynamic live samples by using mammalian and yeast cells, and giant unilamellar vesicles. Map3-2D software is available at http://www.zmbh.uni-heidelberg.de//Central_Services/Imaging_Facility/Map3-2D.html. PMID:26208256

  2. Mapping the North Sea base-Quaternary: using 3D seismic to fill a gap in the geological record

    NASA Astrophysics Data System (ADS)

    Lamb, Rachel; Huuse, Mads; Stewart, Margaret; Brocklehurst, Simon H.

    2014-05-01

    The identification and mapping of the base-Quaternary boundary in the central parts of the North Sea is problematic due to the change from an unconformable transition between Pliocene and Pleistocene deltaic deposits in the southern North Sea to a conformable one further north (Sejrup et al 1991; Gatliff et al 1994). The best estimates of the transition use seismic reflection data to identify a 'crenulated reflector' (Buckley 2012), or rely on correlating sparse biostratigraphy (Cameron et al 1987). Recent integration of biostratigraphy, pollen analysis, paleomagnetism and amino acid analysis in the Dutch and Danish sectors (Rasmussen et al 2005; Kuhlmann et al 2006) allows greater confidence in the correlation to a regional 3D seismic dataset and show that the base-Quaternary can be mapped across the entire basin. The base-Quaternary has been mapped using the PGS MegaSurvey dataset from wells in the Danish Sector along the initially unconformable horizon and down the delta front into the more conformable basin giving a high degree of confidence in the horizon pick. The mapped horizon is presented here alongside the difference between this new interpretation and the previously interpreted base-Quaternary (Buckley 2012). The revised base-Quaternary surface reaches a depth of 1248 ms TWT or approximately 1120 m (assuming average velocity of 1800 m/s) showing an elongate basin shape that follows the underlying structure of the Central Graben. The difference between the revised base-Quaternary and the traditional base-Quaternary reaches a maximum of over 600 ms TWT or approximately 540 m in the south-west with over 300 ms TWT or approximately 270 m at the Josephine well (56° 36.11'N, 2° 27.09'E) in the centre of the basin. Mapping this new base-Quaternary allows for the interpretation of the paleo-envionrment during the earliest Quaternary. Seismic attribute analysis indicates a deep water basin with sediment deposition from multiple deltas and redistribution by deep

  3. Mapping molecular orientational distributions for biological sample in 3D (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    HE, Wei; Ferrand, Patrick; Richter, Benjamin; Bastmeyer, Martin; Brasselet, Sophie

    2016-04-01

    Measuring molecular orientation properties is very appealing for scientists in molecular and cell biology, as well as biomedical research. Orientational organization at the molecular scale is indeed an important brick to cells and tissues morphology, mechanics, functions and pathologies. Recent work has shown that polarized fluorescence imaging, based on excitation polarization tuning in the sample plane, is able to probe molecular orientational order in biological samples; however this applies only to information in 2D, projected in the sample plane. To surpass this limitation, we extended this approach to excitation polarization tuning in 3D. The principle is based on the decomposition of any arbitrary 3D linear excitation in a polarization along the longitudinal z-axis, and a polarization in the transverse xy-sample plane. We designed an interferometer with one arm generating radial polarization light (thus producing longitudinal polarization under high numerical aperture focusing), the other arm controlling a linear polarization in the transverse plane. The amplitude ratio between the two arms can vary so as to get any linear polarized excitation in 3D at the focus of a high NA objective. This technique has been characterized by polarimetry imaging at the back focal plane of the focusing objective, and modeled theoretically. 3D polarized fluorescence microscopy is demonstrated on actin stress fibers in non-flat cells suspended on synthetic polymer structures forming supporting pillars, for which heterogeneous actin orientational order could be identified. This technique shows a great potential in structural investigations in 3D biological systems, such as cell spheroids and tissues.

  4. Advances in 3D soil mapping and water content estimation using multi-channel ground-penetrating radar

    NASA Astrophysics Data System (ADS)

    Moysey, S. M.

    2011-12-01

    Multi-channel ground-penetrating radar systems have recently become widely available, thereby opening new possibilities for shallow imaging of the subsurface. One advantage of these systems is that they can significantly reduce survey times by simultaneously collecting multiple lines of GPR reflection data. As a result, it is becoming more practical to complete 3D surveys - particularly in situations where the subsurface undergoes rapid changes, e.g., when monitoring infiltration and redistribution of water in soils. While 3D and 4D surveys can provide a degree of clarity that significantly improves interpretation of the subsurface, an even more powerful feature of the new multi-channel systems for hydrologists is their ability to collect data using multiple antenna offsets. Central mid-point (CMP) surveys have been widely used to estimate radar wave velocities, which can be related to water contents, by sequentially increasing the distance, i.e., offset, between the source and receiver antennas. This process is highly labor intensive using single-channel systems and therefore such surveys are often only performed at a few locations at any given site. In contrast, with multi-channel GPR systems it is possible to physically arrange an array of antennas at different offsets, such that a CMP-style survey is performed at every point along a radar transect. It is then possible to process this data to obtain detailed maps of wave velocity with a horizontal resolution on the order of centimeters. In this talk I review concepts underlying multi-channel GPR imaging with an emphasis on multi-offset profiling for water content estimation. Numerical simulations are used to provide examples that illustrate situations where multi-offset GPR profiling is likely to be successful, with an emphasis on considering how issues like noise, soil heterogeneity, vertical variations in water content and weak reflection returns affect algorithms for automated analysis of the data. Overall

  5. Measuring distances and reddenings for a billion stars: Toward a 3D dust map from Pan-STARRS 1

    SciTech Connect

    Green, Gregory Maurice; Finkbeiner, Douglas P.; Schlafly, Edward F.; Rix, Hans-Walter; Jurić, Mario; Burgett, Will; Chambers, Kenneth C.; Flewelling, Heather; Kudritzki, Rolf Peter; Magnier, Eugene; Tonry, John; Wainscoat, Richard; Waters, Christopher; Draper, Peter W.; Metcalfe, Nigel; Martin, Nicolas

    2014-03-10

    We present a method to infer reddenings and distances to stars based only on their broad-band photometry, and show how this method can be used to produce a three-dimensional (3D) dust map of the Galaxy. Our method samples from the full probability density function of distance, reddening, and stellar type for individual stars, as well as the full uncertainty in reddening as a function of distance in the 3D dust map. We incorporate prior knowledge of the distribution of stars in the Galaxy and the detection limits of the survey. For stars in the Pan-STARRS 1 (PS1) 3π survey, we demonstrate that our reddening estimates are unbiased and accurate to ∼0.13 mag in E(B – V) for the typical star. Based on comparisons with mock catalogs, we expect distances for main-sequence stars to be constrained to within ∼20%-60%, although this range can vary, depending on the reddening of the star, the precise stellar type, and its position on the sky. A later paper will present a 3D map of dust over the three quarters of the sky surveyed by PS1. Both the individual stellar inferences and the 3D dust map will enable a wealth of Galactic science in the plane. The method we present is not limited to the passbands of the PS1 survey but may be extended to incorporate photometry from other surveys, such as the Two Micron All Sky Survey, the Sloan Digital Sky Survey (where available), and in the future, LSST and Gaia.

  6. An Efficient Algorithm for Mapping Imaging Data to 3D Unstructured Grids in Computational Biomechanics

    SciTech Connect

    Einstein, Daniel R.; Kuprat, Andrew P.; Jiao, Xiangmin; Carson, James P.; Einstein, David M.; Corley, Richard A.; Jacob, Rick E.

    2013-01-01

    Geometries for organ scale and multiscale simulations of organ function are now routinely derived from imaging data. However, medical images may also contain spatially heterogeneous information other than geometry that are relevant to such simulations either as initial conditions or in the form of model parameters. In this manuscript, we present an algorithm for the efficient and robust mapping of such data to imaging based unstructured polyhedral grids in parallel. We then illustrate the application of our mapping algorithm to three different mapping problems: 1) the mapping of MRI diffusion tensor data to an unstuctured ventricular grid; 2) the mapping of serial cyro-section histology data to an unstructured mouse brain grid; and 3) the mapping of CT-derived volumetric strain data to an unstructured multiscale lung grid. Execution times and parallel performance are reported for each case.

  7. Air Velocity Mapping of Environmental Test Chambers

    DTIC Science & Technology

    1989-07-01

    variable that must be measured for the evaluations of the air diffusion performance index (ADPI), or the thermal comfort indices such as predicted mean...altered. The impact of asymmetrical airflow patterns undoubtedly affect human thermal comfort votes. The standardized 6 technique described in this...report could be easily employed prior to or along with specific studies requiring precise air velocity data, and coupled with human thermal comfort surveys

  8. Radial Velocity Eclipse Mapping of Exoplanets

    NASA Astrophysics Data System (ADS)

    Nikolov, Nikolay; Sainsbury-Martinez, Felix

    2015-07-01

    Planetary rotation rates and obliquities provide information regarding the history of planet formation, but have not yet been measured for evolved extrasolar planets. Here we investigate the theoretical and observational perspective of the Rossiter-McLaughlin effect during secondary eclipse (RMse) ingress and egress for transiting exoplanets. Near secondary eclipse, when the planet passes behind the parent star, the star sequentially obscures light from the approaching and receding parts of the rotating planetary surface. The temporal block of light emerging from the approaching (blueshifted) or receding (redshifted) parts of the planet causes a temporal distortion in the planet’s spectral line profiles resulting in an anomaly in the planet’s radial velocity curve. We demonstrate that the shape and the ratio of the ingress-to-egress radial velocity amplitudes depends on the planetary rotational rate, axial tilt, and impact factor (i.e., sky-projected planet spin-orbital alignment). In addition, line asymmetries originating from different layers in the atmosphere of the planet could provide information regarding zonal atmospheric winds and constraints on the hot spot shape for giant irradiated exoplanets. The effect is expected to be most-pronounced at near-infrared wavelengths, where the planet-to-star contrasts are large. We create synthetic near-infrared, high-dispersion spectroscopic data and demonstrate how the sky-projected spin axis orientation and equatorial velocity of the planet can be estimated. We conclude that the RMse effect could be a powerful method to measure exoplanet spins.

  9. RADIAL VELOCITY ECLIPSE MAPPING OF EXOPLANETS

    SciTech Connect

    Nikolov, Nikolay; Sainsbury-Martinez, Felix

    2015-07-20

    Planetary rotation rates and obliquities provide information regarding the history of planet formation, but have not yet been measured for evolved extrasolar planets. Here we investigate the theoretical and observational perspective of the Rossiter–McLaughlin effect during secondary eclipse (RMse) ingress and egress for transiting exoplanets. Near secondary eclipse, when the planet passes behind the parent star, the star sequentially obscures light from the approaching and receding parts of the rotating planetary surface. The temporal block of light emerging from the approaching (blueshifted) or receding (redshifted) parts of the planet causes a temporal distortion in the planet’s spectral line profiles resulting in an anomaly in the planet’s radial velocity curve. We demonstrate that the shape and the ratio of the ingress-to-egress radial velocity amplitudes depends on the planetary rotational rate, axial tilt, and impact factor (i.e., sky-projected planet spin–orbital alignment). In addition, line asymmetries originating from different layers in the atmosphere of the planet could provide information regarding zonal atmospheric winds and constraints on the hot spot shape for giant irradiated exoplanets. The effect is expected to be most-pronounced at near-infrared wavelengths, where the planet-to-star contrasts are large. We create synthetic near-infrared, high-dispersion spectroscopic data and demonstrate how the sky-projected spin axis orientation and equatorial velocity of the planet can be estimated. We conclude that the RMse effect could be a powerful method to measure exoplanet spins.

  10. Improving GOOGLE'S Cartographer 3d Mapping by Continuous-Time Slam

    NASA Astrophysics Data System (ADS)

    Nüchter, A.; Bleier, M.; Schauer, J.; Janotta, P.

    2017-02-01

    This paper shows how to use the result of Google's SLAM solution, called Cartographer, to bootstrap our continuous-time SLAM algorithm. The presented approach optimizes the consistency of the global point cloud, and thus improves on Google's results. We use the algorithms and data from Google as input for our continuous-time SLAM software. We also successfully applied our software to a similar backpack system which delivers consistent 3D point clouds even in absence of an IMU.

  11. 5D Modelling: An Efficient Approach for Creating Spatiotemporal Predictive 3D Maps of Large-Scale Cultural Resources

    NASA Astrophysics Data System (ADS)

    Doulamis, A.; Doulamis, N.; Ioannidis, C.; Chrysouli, C.; Grammalidis, N.; Dimitropoulos, K.; Potsiou, C.; Stathopoulou, E.-K.; Ioannides, M.

    2015-08-01

    Outdoor large-scale cultural sites are mostly sensitive to environmental, natural and human made factors, implying an imminent need for a spatio-temporal assessment to identify regions of potential cultural interest (material degradation, structuring, conservation). On the other hand, in Cultural Heritage research quite different actors are involved (archaeologists, curators, conservators, simple users) each of diverse needs. All these statements advocate that a 5D modelling (3D geometry plus time plus levels of details) is ideally required for preservation and assessment of outdoor large scale cultural sites, which is currently implemented as a simple aggregation of 3D digital models at different time and levels of details. The main bottleneck of such an approach is its complexity, making 5D modelling impossible to be validated in real life conditions. In this paper, a cost effective and affordable framework for 5D modelling is proposed based on a spatial-temporal dependent aggregation of 3D digital models, by incorporating a predictive assessment procedure to indicate which regions (surfaces) of an object should be reconstructed at higher levels of details at next time instances and which at lower ones. In this way, dynamic change history maps are created, indicating spatial probabilities of regions needed further 3D modelling at forthcoming instances. Using these maps, predictive assessment can be made, that is, to localize surfaces within the objects where a high accuracy reconstruction process needs to be activated at the forthcoming time instances. The proposed 5D Digital Cultural Heritage Model (5D-DCHM) is implemented using open interoperable standards based on the CityGML framework, which also allows the description of additional semantic metadata information. Visualization aspects are also supported to allow easy manipulation, interaction and representation of the 5D-DCHM geometry and the respective semantic information. The open source 3DCity

  12. Comparative analysis of 3D expression patterns of transcription factor genes and digit fate maps in the developing chick wing.

    PubMed

    Fisher, Malcolm; Downie, Helen; Welten, Monique C M; Delgado, Irene; Bain, Andrew; Planzer, Thorsten; Sherman, Adrian; Sang, Helen; Tickle, Cheryll

    2011-04-22

    Hoxd13, Tbx2, Tbx3, Sall1 and Sall3 genes are candidates for encoding antero-posterior positional values in the developing chick wing and specifying digit identity. In order to build up a detailed profile of gene expression patterns in cell lineages that give rise to each of the digits over time, we compared 3 dimensional (3D) expression patterns of these genes during wing development and related them to digit fate maps. 3D gene expression data at stages 21, 24 and 27 spanning early bud to digital plate formation, captured from in situ hybridisation whole mounts using Optical Projection Tomography (OPT) were mapped to reference wing bud models. Grafts of wing bud tissue from GFP chicken embryos were used to fate map regions of the wing bud giving rise to each digit; 3D images of the grafts were captured using OPT and mapped on to the same models. Computational analysis of the combined computerised data revealed that Tbx2 and Tbx3 are expressed in digit 3 and 4 progenitors at all stages, consistent with encoding stable antero-posterior positional values established in the early bud; Hoxd13 and Sall1 expression is more dynamic, being associated with posterior digit 3 and 4 progenitors in the early bud but later becoming associated with anterior digit 2 progenitors in the digital plate. Sox9 expression in digit condensations lies within domains of digit progenitors defined by fate mapping; digit 3 condensations express Hoxd13 and Sall1, digit 4 condensations Hoxd13, Tbx3 and to a lesser extent Tbx2. Sall3 is only transiently expressed in digit 3 progenitors at stage 24 together with Sall1 and Hoxd13; then becomes excluded from the digital plate. These dynamic patterns of expression suggest that these genes may play different roles in digit identity either together or in combination at different stages including the digit condensation stage.

  13. Lessons in modern digital field geology: Open source software, 3D techniques, and the new world of digital mapping

    NASA Astrophysics Data System (ADS)

    Pavlis, Terry; Hurtado, Jose; Langford, Richard; Serpa, Laura

    2014-05-01

    Although many geologists refuse to admit it, it is time to put paper-based geologic mapping into the historical archives and move to the full potential of digital mapping techniques. For our group, flat map digital geologic mapping is now a routine operation in both research and instruction. Several software options are available, and basic proficiency with the software can be learned in a few hours of instruction and practice. The first practical field GIS software, ArcPad, remains a viable, stable option on Windows-based systems. However, the vendor seems to be moving away from ArcPad in favor of mobile software solutions that are difficult to implement without GIS specialists. Thus, we have pursued a second software option based on the open source program QGIS. Our QGIS system uses the same shapefile-centric data structure as our ArcPad system, including similar pop-up data entry forms and generic graphics for easy data management in the field. The advantage of QGIS is that the same software runs on virtually all common platforms except iOS, although the Android version remains unstable as of this writing. A third software option we are experimenting with for flat map-based field work is Fieldmove, a derivative of the 3D-capable program Move developed by Midland Valley. Our initial experiments with Fieldmove are positive, particularly with the new, inexpensive (<300Euros) Windows tablets. However, the lack of flexibility in data structure makes for cumbersome workflows when trying to interface our existing shapefile-centric data structures to Move. Nonetheless, in spring 2014 we will experiment with full-3D immersion in the field using the full Move software package in combination with ground based LiDAR and photogrammetry. One new workflow suggested by our initial experiments is that field geologists should consider using photogrammetry software to capture 3D visualizations of key outcrops. This process is now straightforward in several software packages, and

  14. Electromechanical wave imaging (EWI) validation in all four cardiac chambers with 3D electroanatomic mapping in canines in vivo

    NASA Astrophysics Data System (ADS)

    Costet, Alexandre; Wan, Elaine; Bunting, Ethan; Grondin, Julien; Garan, Hasan; Konofagou, Elisa

    2016-11-01

    Characterization and mapping of arrhythmias is currently performed through invasive insertion and manipulation of cardiac catheters. Electromechanical wave imaging (EWI) is a non-invasive ultrasound-based imaging technique, which tracks the electromechanical activation that immediately follows electrical activation. Electrical and electromechanical activations were previously found to be linearly correlated in the left ventricle, but the relationship has not yet been investigated in the three other chambers of the heart. The objective of this study was to investigate the relationship between electrical and electromechanical activations and validate EWI in all four chambers of the heart with conventional 3D electroanatomical mapping. Six (n  =  6) normal adult canines were used in this study. The electrical activation sequence was mapped in all four chambers of the heart, both endocardially and epicardially using the St Jude’s EnSite 3D mapping system (St. Jude Medical, Secaucus, NJ). EWI acquisitions were performed in all four chambers during normal sinus rhythm, and during pacing in the left ventricle. Isochrones of the electromechanical activation were generated from standard echocardiographic imaging views. Electrical and electromechanical activation maps were co-registered and compared, and electrical and electromechanical activation times were plotted against each other and linear regression was performed for each pair of activation maps. Electromechanical and electrical activations were found to be directly correlated with slopes of the correlation ranging from 0.77 to 1.83, electromechanical delays between 9 and 58 ms and R 2 values from 0.71 to 0.92. The linear correlation between electrical and electromechanical activations and the agreement between the activation maps indicate that the electromechanical activation follows the pattern of propagation of the electrical activation. This suggests that EWI may be used as a novel non-invasive method

  15. Visualization and mapping of neurosurgical functional brain data onto a 3-D MR-based model of the brain surface.

    PubMed

    Modayur, B R; Prothero, J; Rosse, C; Jakobovits, R; Brinkley, J F

    1996-01-01

    The Human Brain Project was initiated with the goal of developing methods for managing and sharing information about the brain. As a prototype Human Brain Project application we are developing a system for organizing, visualizing, integrating and sharing information about human language function. The goal of the brain mapping component of our work, described in this article, is to generate the 3D location and extent of cortical language sites with respect to a uniform, 3D patient coordinate system. The language sites of individual patients can then be combined with or related to other patient data in terms of a Talairach, surface-based, or other deformable coordinate systems. Language site mapping is done by visually comparing an intraoperative photograph with the rendered image (from MRI data). The techniques outlined in this article have been utilized to map cortical language sites of six patients. Preliminary results point to the adequacy of our volume visualizations for language mapping. The strength of the visualization scheme lies in the combination of interactive segmentation with volume and surface visualization. We are now in the process of acquiring more patient data to further validate the usefulness of our method.

  16. A simple, fast, and repeatable survey method for underwater visual 3D benthic mapping and monitoring.

    PubMed

    Pizarro, Oscar; Friedman, Ariell; Bryson, Mitch; Williams, Stefan B; Madin, Joshua

    2017-03-01

    Visual 3D reconstruction techniques provide rich ecological and habitat structural information from underwater imagery. However, an unaided swimmer or diver struggles to navigate precisely over larger extents with consistent image overlap needed for visual reconstruction. While underwater robots have demonstrated systematic coverage of areas much larger than the footprint of a single image, access to suitable robotic systems is limited and requires specialized operators. Furthermore, robots are poor at navigating hydrodynamic habitats such as shallow coral reefs. We present a simple approach that constrains the motion of a swimmer using a line unwinding from a fixed central drum. The resulting motion is the involute of a circle, a spiral-like path with constant spacing between revolutions. We test this survey method at a broad range of habitats and hydrodynamic conditions encircling Lizard Island in the Great Barrier Reef, Australia. The approach generates fast, structured, repeatable, and large-extent surveys (~110 m(2) in 15 min) that can be performed with two people and are superior to the commonly used "mow the lawn" method. The amount of image overlap is a design parameter, allowing for surveys that can then be reliably used in an automated processing pipeline to generate 3D reconstructions, orthographically projected mosaics, and structural complexity indices. The individual images or full mosaics can also be labeled for benthic diversity and cover estimates. The survey method we present can serve as a standard approach to repeatedly collecting underwater imagery for high-resolution 2D mosaics and 3D reconstructions covering spatial extents much larger than a single image footprint without requiring sophisticated robotic systems or lengthy deployment of visual guides. As such, it opens up cost-effective novel observations to inform studies relating habitat structure to ecological processes and biodiversity at scales and spatial resolutions not readily

  17. Improved 3D Look-Locker Acquisition Scheme and Angle Map Filtering Procedure for T1 Estimation

    PubMed Central

    Hui, CheukKai; Esparza-Coss, Emilio; Narayana, Ponnada A

    2013-01-01

    The 3D Look-Locker (LL) acquisition is a widely used fast and efficient T1 mapping method. However, the multi-shot approach of 3D LL acquisition can introduce reconstruction artifacts that result in intensity distortions. Traditional 3D LL acquisition generally utilizes centric encoding scheme that is limited to a single phase encoding direction in the k-space. To optimize the k-space segmentation, an elliptical scheme with two phase encoding directions is implemented for the LL acquisition. This elliptical segmentation can reduce the intensity errors in the reconstructed images and improve the final T1 estimation. One of the major sources of error in LL based T1 estimation is lack of accurate knowledge of the actual flip angle. Multi-parameter curve fitting procedure can account for some of the variability in the flip angle. However, curve fitting can also introduce errors in the estimated flip angle that can result in incorrect T1 values. A filtering procedure based on goodness of fit (GOF) is proposed to reduce the effect of false flip angle estimates. Filtering based on the GOF weighting can remove likely incorrect angles that result in bad curve fit. Simulation, phantom, and in-vivo studies have demonstrated that these techniques can improve the accuracy of 3D LL T1 estimation. PMID:23784967

  18. Interpretation and mapping of geological features using mobile devices for 3D outcrop modelling

    NASA Astrophysics Data System (ADS)

    Buckley, Simon J.; Kehl, Christian; Mullins, James R.; Howell, John A.

    2016-04-01

    Advances in 3D digital geometric characterisation have resulted in widespread adoption in recent years, with photorealistic models utilised for interpretation, quantitative and qualitative analysis, as well as education, in an increasingly diverse range of geoscience applications. Topographic models created using lidar and photogrammetry, optionally combined with imagery from sensors such as hyperspectral and thermal cameras, are now becoming commonplace in geoscientific research. Mobile devices (tablets and smartphones) are maturing rapidly to become powerful field computers capable of displaying and interpreting 3D models directly in the field. With increasingly high-quality digital image capture, combined with on-board sensor pose estimation, mobile devices are, in addition, a source of primary data, which can be employed to enhance existing geological models. Adding supplementary image textures and 2D annotations to photorealistic models is therefore a desirable next step to complement conventional field geoscience. This contribution reports on research into field-based interpretation and conceptual sketching on images and photorealistic models on mobile devices, motivated by the desire to utilise digital outcrop models to generate high quality training images (TIs) for multipoint statistics (MPS) property modelling. Representative training images define sedimentological concepts and spatial relationships between elements in the system, which are subsequently modelled using artificial learning to populate geocellular models. Photorealistic outcrop models are underused sources of quantitative and qualitative information for generating TIs, explored further in this research by linking field and office workflows through the mobile device. Existing textured models are loaded to the mobile device, allowing rendering in a 3D environment. Because interpretation in 2D is more familiar and comfortable for users, the developed application allows new images to be captured

  19. GPU-based rapid reconstruction of cellular 3D refractive index maps from tomographic phase microscopy (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Dardikman, Gili; Shaked, Natan T.

    2016-03-01

    We present highly parallel and efficient algorithms for real-time reconstruction of the quantitative three-dimensional (3-D) refractive-index maps of biological cells without labeling, as obtained from the interferometric projections acquired by tomographic phase microscopy (TPM). The new algorithms are implemented on the graphic processing unit (GPU) of the computer using CUDA programming environment. The reconstruction process includes two main parts. First, we used parallel complex wave-front reconstruction of the TPM-based interferometric projections acquired at various angles. The complex wave front reconstructions are done on the GPU in parallel, while minimizing the calculation time of the Fourier transforms and phase unwrapping needed. Next, we implemented on the GPU in parallel the 3-D refractive index map retrieval using the TPM filtered-back projection algorithm. The incorporation of algorithms that are inherently parallel with a programming environment such as Nvidia's CUDA makes it possible to obtain real-time processing rate, and enables high-throughput platform for label-free, 3-D cell visualization and diagnosis.

  20. In vivo MEMRI characterization of brain metastases using a 3D Look-Locker T1-mapping sequence

    PubMed Central

    Castets, Charles R.; Koonjoo, Néha; Hertanu, Andreea; Voisin, Pierre; Franconi, Jean-Michel; Miraux, Sylvain; Ribot, Emeline J.

    2016-01-01

    Although MEMRI (Manganese Enhanced MRI) informations were obtained on primary tumors in small animals, MEMRI data on metastases are lacking. Thus, our goal was to determine if 3D Look-Locker T1 mapping was an efficient method to evaluate Mn ions transport in brain metastases in vivo. The high spatial resolution in 3D (156 × 156 × 218 μm) of the sequence enabled to detect metastases of 0.3 mm3. In parallel, the T1 quantitation enabled to distinguish three populations of MDA-MB-231 derived brain metastases after MnCl2 intravenous injection: one with a healthy blood-tumor barrier that did not internalize Mn2+ ions, and two others, which T1 shortened drastically by 54.2% or 24%. Subsequent scans of the mice, enabled by the fast acquisition (23 min), demonstrated that these T1 reached back their pre-injection values in 24 h. Contrarily to metastases, the T1 of U87-MG glioma remained 26.2% shorter for one week. In vitro results supported the involvement of the Transient Receptor Potential channels and the Calcium-Sensing Receptor in the uptake and efflux of Mn2+ ions, respectively. This study highlights the ability of the 3D Look-Locker T1 mapping sequence to study heterogeneities (i) amongst brain metastases and (ii) between metastases and glioma regarding Mn transport. PMID:27995976

  1. 3D-Pharmacophore mapping of thymidine-based inhibitors of TMPK as potential antituberculosis agents

    NASA Astrophysics Data System (ADS)

    Andrade, Carolina Horta; Pasqualoto, Kerly F. M.; Ferreira, Elizabeth I.; Hopfinger, Anton J.

    2010-02-01

    Tuberculosis (TB) is the primary cause of mortality among infectious diseases. Mycobacterium tuberculosis monophosphate kinase (TMPKmt) is essential to DNA replication. Thus, this enzyme represents a promising target for developing new drugs against TB. In the present study, the receptor-independent, RI, 4D-QSAR method has been used to develop QSAR models and corresponding 3D-pharmacophores for a set of 81 thymidine analogues, and two corresponding subsets, reported as inhibitors of TMPKmt . The resulting optimized models are not only statistically significant with r 2 ranging from 0.83 to 0.92 and q 2 from 0.78 to 0.88, but also are robustly predictive based on test set predictions. The most and the least potent inhibitors in their respective postulated active conformations, derived from each of the models, were docked in the active site of the TMPKmt crystal structure. There is a solid consistency between the 3D-pharmacophore sites defined by the QSAR models and interactions with binding site residues. Moreover, the QSAR models provide insights regarding a probable mechanism of action of the analogues.

  2. CheS-Mapper - Chemical Space Mapping and Visualization in 3D

    PubMed Central

    2012-01-01

    Analyzing chemical datasets is a challenging task for scientific researchers in the field of chemoinformatics. It is important, yet difficult to understand the relationship between the structure of chemical compounds, their physico-chemical properties, and biological or toxic effects. To that respect, visualization tools can help to better comprehend the underlying correlations. Our recently developed 3D molecular viewer CheS-Mapper (Chemical Space Mapper) divides large datasets into clusters of similar compounds and consequently arranges them in 3D space, such that their spatial proximity reflects their similarity. The user can indirectly determine similarity, by selecting which features to employ in the process. The tool can use and calculate different kind of features, like structural fragments as well as quantitative chemical descriptors. These features can be highlighted within CheS-Mapper, which aids the chemist to better understand patterns and regularities and relate the observations to established scientific knowledge. As a final function, the tool can also be used to select and export specific subsets of a given dataset for further analysis. PMID:22424447

  3. In-situ biofouling assessment in spacer filled channels using optical coherence tomography (OCT): 3D biofilm thickness mapping.

    PubMed

    Fortunato, Luca; Leiknes, TorOve

    2017-04-01

    Membrane systems for water purification can be seriously hampered by biofouling. The use of optical coherence tomography (OCT) to investigate biofilms in membrane systems has recently increased due to the ability to do the characterization in-situ and non-destructively. The OCT biofilm thickness map is presented for the first time as a tool to assess biofilm spatial distribution on a surface. The map allows the visualization and evaluation of the biofilm formation and growth in membrane filtration systems through the use of a false color scale. The biofilm development was monitored with OCT to evaluate the suitability of the proposed approach. A 3D time series analysis of biofilm development in a spacer filled channel representative of a spiral-wound membrane element was performed. The biofilm thickness map enables the time-resolved and spatial-resolved evaluation and visualization of the biofilm deposition pattern in-situ non-destructively.

  4. Mapping of the C3d receptor (CR2)-binding site and a neoantigenic site in the C3d domain of the third component of complement.

    PubMed Central

    Lambris, J D; Ganu, V S; Hirani, S; Müller-Eberhard, H J

    1985-01-01

    The C3d domain of C3 contains the site that binds to the C3d receptor (CR2) which is expressed on B lymphocytes. It also contains a neoantigenic determinant that is recognized by monoclonal antibody (mAb) 130 and is expressed when C3b is cleaved to iC3b and subsequently to C3dg or C3d. mAb 130 inhibits the binding of C3d to CR2. In this study, the locations of the CR2-binding site and of the neoantigen recognized by mAb 130 within the C3d domain were investigated. Treatment of human C3d with CNBr generated two major fragments with Mrs of 12,500 and 8600. Binding studies showed that only the Mr 8600 fragment was capable of binding to both CR2 and mAb 130. Amino-terminal sequence analysis of the Mr 8600 fragment and comparison with the amino acid sequence derived from human C3 cDNA [de Bruijn, M. H. L. & Fey, G. H. (1985) Proc. Natl. Acad. Sci. USA 82, 708-712] placed it between residues 1199 and 1274 of the C3 sequence. Several peptides were synthesized according to the derived C3 sequence of amino acid residues 1209-1236. Based on their differential binding to CR2 and mAb 130, we localized the CR2-binding site and mAb 130 neoantigenic site, respectively, to residues 1227-1232 and 1217-1232 of the C3 sequence. PMID:2408276

  5. Mapping snow avalanche risk using GIS technique and 3D modeling in Ceahlau Mountain

    NASA Astrophysics Data System (ADS)

    Covasnianu, A.; Grigoras, I. R.; State, L. E.; Balin, D.; Hogas, S.; Balin, I.

    2009-04-01

    This study consisted in a precise mapping project (GPS field campaign and on-screen digitization of the topographic maps at 1:5.000 scale) of the Ceahlau mountain area in Romanian Carpathians in order to address the snow avalanche risk management, surveying and monitoring. Thus we considered the slope, aspect, altitude, landforms and roughness derived from a high resolute numerical terrain model (31 km2 at 1: 5.000 scale resulted in a spatial resolution of 3 m by the help of Topo to Raster tool). These parameters were classified according to a model applied into Tatra Mountains and used over Ceahlau Massive. The results were adapted and interpreted considering to the European Avalanche Hazard Scale. This work was made in the context of the elaboration of Risk Map and is directly concerning both the security of tourism activities but also the management of the Natural Park Ceahlau. The extension of this method to similar mountain areas is ongoing.

  6. Evaluating the Potential of Rtk-Uav for Automatic Point Cloud Generation in 3d Rapid Mapping

    NASA Astrophysics Data System (ADS)

    Fazeli, H.; Samadzadegan, F.; Dadrasjavan, F.

    2016-06-01

    During disaster and emergency situations, 3D geospatial data can provide essential information for decision support systems. The utilization of geospatial data using digital surface models as a basic reference is mandatory to provide accurate quick emergency response in so called rapid mapping activities. The recipe between accuracy requirements and time restriction is considered critical in this situations. UAVs as alternative platforms for 3D point cloud acquisition offer potentials because of their flexibility and practicability combined with low cost implementations. Moreover, the high resolution data collected from UAV platforms have the capabilities to provide a quick overview of the disaster area. The target of this paper is to experiment and to evaluate a low-cost system for generation of point clouds using imagery collected from a low altitude small autonomous UAV equipped with customized single frequency RTK module. The customized multi-rotor platform is used in this study. Moreover, electronic hardware is used to simplify user interaction with the UAV as RTK-GPS/Camera synchronization, and beside the synchronization, lever arm calibration is done. The platform is equipped with a Sony NEX-5N, 16.1-megapixel camera as imaging sensor. The lens attached to camera is ZEISS optics, prime lens with F1.8 maximum aperture and 24 mm focal length to deliver outstanding images. All necessary calibrations are performed and flight is implemented over the area of interest at flight height of 120 m above the ground level resulted in 2.38 cm GSD. Earlier to image acquisition, 12 signalized GCPs and 20 check points were distributed in the study area and measured with dualfrequency GPS via RTK technique with horizontal accuracy of σ = 1.5 cm and vertical accuracy of σ = 2.3 cm. results of direct georeferencing are compared to these points and experimental results show that decimeter accuracy level for 3D points cloud with proposed system is achievable, that is suitable

  7. VizieR Online Data Catalog: 3D extinction map of northern Galactic plane (Sale+, 2014)

    NASA Astrophysics Data System (ADS)

    Sale, S. E.; Drew, J. E.; Barentsen, G.; Farnhill, H. J.; Raddi, R.; Barlow, M. J.; Eisloffel, J.; Vink, J. S.; Rodriguez-Gil, P.; Wright, N. J.

    2014-06-01

    We present a three dimensional map of extinction in the Northern Galactic Plane derived using photometry from the IPHAS survey. We construct the map using a method based on a hierarchical Bayesian model as previously described by Sale (2012MNRAS.427.2119S). In addition to mean extinction, we also measure differential extinction, which arises from the fractal nature of the ISM. The method applied also furnishes us with photometric estimates of the distance, extinction, effective temperature, surface gravity, and mass for ~38 million stars. Further details about the data as well as additional formats and data products are available via http://www.iphas.org/extinction. (2 data files).

  8. A 3D dust map from Pan-STARRS 1 photometry

    NASA Astrophysics Data System (ADS)

    Green, Gregory M.

    We have constructed a three-dimensional map of dust in the Milky Way, tracing reddening on ˜ 7' scales out to a distance of several kiloparsecs. We trace reddening using stars embedded in the dust, by simultaneously inferring stellar distance, stellar type, and the reddening along the line of sight. We use 5-band grizy Pan-STARRS 1 photometry of 800 million stars, augmented by 3-band 2MASS JHKs photometry when available. The full map is available at http://argonaut.skymaps.info. An online version of this talk is available at http://http://greg.ory.gr/present/ewass2015.

  9. EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy

    DOE PAGES

    Barad, Benjamin A.; Echols, Nathaniel; Wang, Ray Yu-Ruei; ...

    2015-08-17

    Advances in high-resolution cryo-electron microscopy (cryo-EM) require the development of validation metrics to independently assess map quality and model geometry. We report that EMRinger is a tool that assesses the precise fitting of an atomic model into the map during refinement and shows how radiation damage alters scattering from negatively charged amino acids. EMRinger (https://github.com/fraser-lab/EMRinger) will be useful for monitoring progress in resolving and modeling high-resolution features in cryo-EM.

  10. Mapping of the spontaneous deletion in the Ap3d1 gene of mocha mice: fast and reliable genotyping

    PubMed Central

    Drasbek, Kim Ryun; Holm, Mai Marie; Delenclos, Marion; Jensen, Kimmo

    2008-01-01

    Background The mocha mouse carries a spontaneous deletion in the Ap3d1 gene, encoding the delta 1 subunit of the adaptor related protein complex 3, (Ap3d1), and subsequently lack the expression of functional AP-3. This leads to a deficiency in vesicle transport and storage, which affects neurotransmitter vesicle turnover and release in the central nervous system. Since the genomic sequence of the Ap3d1 gene of mocha mouse is not known, precise mapping of the deletion as well as reliable genotyping protocols are lacking. Findings We sequenced the Ap3d1 gene (HGNC GeneID: 8943) around the deletion site in the mocha mouse and revealed a 10639 bp deletion covering exon 2 to 6. Subsequently, new PCR primers were designed yielding a reliable genotyping protocol of both newborn and adult tissue. To examine the genotypes further, hippocampal neurons were cultured from mocha and control mice. Patch-clamp recordings showed that mocha neurons had a higher input resistance, and that autaptic EPSC in mocha cultures depressed faster and stronger as compared with control cultures. Conclusion Our study reports the sequence of the deleted part of the Ap3d1 gene in mocha mice, as well as a reliable PCR-based genotyping protocol. We cultured hippocampal neurons from control and mocha mice, and found a difference in input resistance of the neurons, and in the synaptic short-term plasticity of glutamatergic autapses showing a larger synaptic depression than controls. The described procedures may be useful for the future utilization of the mocha mouse as a model of defective vesicle biogenesis. Importantly, as genotyping by eye color is complicated in newborn mice, the designed protocol is so fast and reliable that newborn mice could rapidly be genotyped and hippocampal neurons dissociated and cultured, which is normally best done at P0-P2. PMID:19032734

  11. Large Deformation Diffeomorphic Metric Mapping Registration of Reconstructed 3D Histological Section Images and in vivo MR Images

    PubMed Central

    Ceritoglu, Can; Wang, Lei; Selemon, Lynn D.; Csernansky, John G.; Miller, Michael I.; Ratnanather, J. Tilak

    2009-01-01

    Our current understanding of neuroanatomical abnormalities in neuropsychiatric diseases is based largely on magnetic resonance imaging (MRI) and post mortem histological analyses of the brain. Further advances in elucidating altered brain structure in these human conditions might emerge from combining MRI and histological methods. We propose a multistage method for registering 3D volumes reconstructed from histological sections to corresponding in vivo MRI volumes from the same subjects: (1) manual segmentation of white matter (WM), gray matter (GM) and cerebrospinal fluid (CSF) compartments in histological sections, (2) alignment of consecutive histological sections using 2D rigid transformation to construct a 3D histological image volume from the aligned sections, (3) registration of reconstructed 3D histological volumes to the corresponding 3D MRI volumes using 3D affine transformation, (4) intensity normalization of images via histogram matching, and (5) registration of the volumes via intensity based large deformation diffeomorphic metric (LDDMM) image matching algorithm. Here we demonstrate the utility of our method in the transfer of cytoarchitectonic information from histological sections to identify regions of interest in MRI scans of nine adult macaque brains for morphometric analyses. LDDMM improved the accuracy of the registration via decreased distances between GM/CSF surfaces after LDDMM (0.39 ± 0.13 mm) compared to distances after affine registration (0.76 ± 0.41 mm). Similarly, WM/GM distances decreased to 0.28 ± 0.16 mm after LDDMM compared to 0.54 ± 0.39 mm after affine registration. The multistage registration method may find broad application for mapping histologically based information, for example, receptor distributions, gene expression, onto MRI volumes. PMID:20577633

  12. Symmetry-plane model of 3D Euler flows: Mapping to regular systems and numerical solutions of blowup

    NASA Astrophysics Data System (ADS)

    Mulungye, Rachel M.; Lucas, Dan; Bustamante, Miguel D.

    2014-11-01

    We introduce a family of 2D models describing the dynamics on the so-called symmetry plane of the full 3D Euler fluid equations. These models depend on a free real parameter and can be solved analytically. For selected representative values of the free parameter, we apply the method introduced in [M.D. Bustamante, Physica D: Nonlinear Phenom. 240, 1092 (2011)] to map the fluid equations bijectively to globally regular systems. By comparing the analytical solutions with the results of numerical simulations, we establish that the numerical simulations of the mapped regular systems are far more accurate than the numerical simulations of the original systems, at the same spatial resolution and CPU time. In particular, the numerical integrations of the mapped regular systems produce robust estimates for the growth exponent and singularity time of the main blowup quantity (vorticity stretching rate), converging well to the analytically-predicted values even beyond the time at which the flow becomes under-resolved (i.e. the reliability time). In contrast, direct numerical integrations of the original systems develop unstable oscillations near the reliability time. We discuss the reasons for this improvement in accuracy, and explain how to extend the analysis to the full 3D case. Supported under the programme for Research in Third Level Institutions (PRTLI) Cycle 5 and co-funded by the European Regional Development Fund.

  13. Hard Copy to Digital Transfer: 3D Models that Match 2D Maps

    ERIC Educational Resources Information Center

    Kellie, Andrew C.

    2011-01-01

    This research describes technical drawing techniques applied in a project involving digitizing of existing hard copy subsurface mapping for the preparation of three dimensional graphic and mathematical models. The intent of this research was to identify work flows that would support the project, ensure the accuracy of the digital data obtained,…

  14. Learning Benefits of Using 2D versus 3D Maps: Evidence from a Randomized Controlled Experiment

    ERIC Educational Resources Information Center

    Niedomysl, Thomas; Ellder, Erik; Larsson, Anders; Thelin, Mikael; Jansund, Bodil

    2013-01-01

    The traditional important role of maps used for educational purposes has gained further potential with recent advances in GIS technology. But beyond specific courses in cartography this potential seems little realized in geography teaching. This article investigates the extent to which any learning benefits may be derived from the use of such…

  15. GPR Detection and 3D Mapping of Lateral Macropores II. Riparian Application

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The morphology and prevalence of 1-10 cm diameter macropores in forested riparian wetland buffers is largely unknown despite their importance as a source of preferential nutrient delivery to stream channels. Here, we validated in situ procedures for detecting and mapping the three-dimensional struct...

  16. Error Estimation And Accurate Mapping Based ALE Formulation For 3D Simulation Of Friction Stir Welding

    NASA Astrophysics Data System (ADS)

    Guerdoux, Simon; Fourment, Lionel

    2007-05-01

    An Arbitrary Lagrangian Eulerian (ALE) formulation is developed to simulate the different stages of the Friction Stir Welding (FSW) process with the FORGE3® F.E. software. A splitting method is utilized: a) the material velocity/pressure and temperature fields are calculated, b) the mesh velocity is derived from the domain boundary evolution and an adaptive refinement criterion provided by error estimation, c) P1 and P0 variables are remapped. Different velocity computation and remap techniques have been investigated, providing significant improvement with respect to more standard approaches. The proposed ALE formulation is applied to FSW simulation. Steady state welding, but also transient phases are simulated, showing good robustness and accuracy of the developed formulation. Friction parameters are identified for an Eulerian steady state simulation by comparison with experimental results. Void formation can be simulated. Simulations of the transient plunge and welding phases help to better understand the deposition process that occurs at the trailing edge of the probe. Flexibility and robustness of the model finally allows investigating the influence of new tooling designs on the deposition process.

  17. Assessment of earthquake locations in 3-D deterministic velocity models: A case study from the Altotiberina Near Fault Observatory (Italy)

    NASA Astrophysics Data System (ADS)

    Latorre, D.; Mirabella, F.; Chiaraluce, L.; Trippetta, F.; Lomax, A.

    2016-11-01

    The accuracy of earthquake locations and their correspondence with subsurface geology depends strongly on the accuracy of the available seismic velocity model. Most modern methods to construct a velocity model for earthquake location are based on the inversion of passive source seismological data. Another approach is the integration of high-resolution geological and geophysical data to construct deterministic velocity models in which earthquake locations can be directly correlated to the geological structures. Such models have to be kinematically consistent with independent seismological data in order to provide precise hypocenter solutions. We present the Altotiberina (AT) seismic model, a three-dimensional velocity model for the Upper Tiber Valley region (Northern Apennines, Italy), constructed by combining 300 km of seismic reflection profiles, six deep boreholes (down to 5 km depth), detailed data from geological surveys and direct measurements of P and S wave velocities performed in situ and in laboratory. We assess the robustness of the AT seismic model by locating 11,713 earthquakes with a nonlinear, global-search inversion method and comparing the probabilistic hypocenter solutions to those calculated in three previously published velocity models, constructed by inverting passive seismological data only. Our results demonstrate that the AT seismic model is able to provide higher-quality hypocenter locations than the previous velocity models. Earthquake locations are consistent with the subsurface geological structures and show a high degree of spatial correlation with specific lithostratigraphic units, suggesting a lithological control on the seismic activity evolution.

  18. Mapping tropical biodiversity using spectroscopic imagery : characterization of structural and chemical diversity with 3-D radiative transfer modeling

    NASA Astrophysics Data System (ADS)

    Feret, J. B.; Gastellu-Etchegorry, J. P.; Lefèvre-Fonollosa, M. J.; Proisy, C.; Asner, G. P.

    2014-12-01

    The accelerating loss of biodiversity is a major environmental trend. Tropical ecosystems are particularly threatened due to climate change, invasive species, farming and natural resources exploitation. Recent advances in remote sensing of biodiversity confirmed the potential of high spatial resolution spectroscopic imagery for species identification and biodiversity mapping. Such information bridges the scale-gap between small-scale, highly detailed field studies and large-scale, low-resolution satellite observations. In order to produce fine-scale resolution maps of canopy alpha-diversity and beta-diversity of the Peruvian Amazonian forest, we designed, applied and validated a method based on spectral variation hypothesis to CAO AToMS (Carnegie Airborne Observatory Airborne Taxonomic Mapping System) images, acquired from 2011 to 2013. There is a need to understand on a quantitative basis the physical processes leading to this spectral variability. This spectral variability mainly depends on canopy chemistry, structure, and sensor's characteristics. 3D radiative transfer modeling provides a powerful framework for the study of the relative influence of each of these factors in dense and complex canopies. We simulated series of spectroscopic images with the 3D radiative model DART, with variability gradients in terms of leaf chemistry, individual tree structure, spatial and spectral resolution, and applied methods for biodiversity mapping. This sensitivity study allowed us to determine the relative influence of these factors on the radiometric signal acquired by different types of sensors. Such study is particularly important to define the domain of validity of our approach, to refine requirements for the instrumental specifications, and to help preparing hyperspectral spatial missions to be launched at the horizon 2015-2025 (EnMAP, PRISMA, HISUI, SHALOM, HYSPIRI, HYPXIM). Simulations in preparation include topographic variations in order to estimate the robustness

  19. Comprehensive 4D velocity mapping of the heart and great vessels by cardiovascular magnetic resonance

    PubMed Central

    2011-01-01

    Background Phase contrast cardiovascular magnetic resonance (CMR) is able to measure all three directional components of the velocities of blood flow relative to the three spatial dimensions and the time course of the heart cycle. In this article, methods used for the acquisition, visualization, and quantification of such datasets are reviewed and illustrated. Methods Currently, the acquisition of 3D cine (4D) phase contrast velocity data, synchronized relative to both cardiac and respiratory movements takes about ten minutes or more, even when using parallel imaging and optimized pulse sequence design. The large resulting datasets need appropriate post processing for the visualization of multidirectional flow, for example as vector fields, pathlines or streamlines, or for retrospective volumetric quantification. Applications Multidirectional velocity acquisitions have provided 3D visualization of large scale flow features of the healthy heart and great vessels, and have shown altered patterns of flow in abnormal chambers and vessels. Clinically relevant examples include retrograde streams in atheromatous descending aortas as potential thrombo-embolic pathways in patients with cryptogenic stroke and marked variations of flow visualized in common aortic pathologies. Compared to standard clinical tools, 4D velocity mapping offers the potential for retrospective quantification of flow and other hemodynamic parameters. Conclusions Multidirectional, 3D cine velocity acquisitions are contributing to the understanding of normal and pathologically altered blood flow features. Although more rapid and user-friendly strategies for acquisition and analysis may be needed before 4D velocity acquisitions come to be adopted in routine clinical CMR, their capacity to measure multidirectional flows throughout a study volume has contributed novel insights into cardiovascular fluid dynamics in health and disease. PMID:21235751

  20. Real-time Process Monitoring and Temperature Mapping of the 3D Polymer Printing Process

    SciTech Connect

    Dinwiddie, Ralph Barton; Love, Lonnie J; Rowe, John C

    2013-01-01

    An extended range IR camera was used to make temperature measurements of samples as they are being manufactured. The objective is to quantify the temperature variation inside the system as parts are being fabricated, as well as quantify the temperature of a part during fabrication. The IR camera was used to map the temperature within the build volume of the oven and surface temperature measurement of a part as it was being manufactured. The development of the temperature map of the oven provides insight into the global temperature variation within the oven that may lead to understanding variations in the properties of parts as a function of location. The observation of the temperature variation of a part that fails during construction provides insight into how the deposition process itself impacts temperature distribution within a single part leading to failure.

  1. Dynamic 3-D chemical agent cloud mapping using a sensor constellation deployed on mobile platforms

    NASA Astrophysics Data System (ADS)

    Cosofret, Bogdan R.; Konno, Daisei; Rossi, David; Marinelli, William J.; Seem, Pete

    2014-05-01

    The need for standoff detection technology to provide early Chem-Bio (CB) threat warning is well documented. Much of the information obtained by a single passive sensor is limited to bearing and angular extent of the threat cloud. In order to obtain absolute geo-location, range to threat, 3-D extent and detailed composition of the chemical threat, fusion of information from multiple passive sensors is needed. A capability that provides on-the-move chemical cloud characterization is key to the development of real-time Battlespace Awareness. We have developed, implemented and tested algorithms and hardware to perform the fusion of information obtained from two mobile LWIR passive hyperspectral sensors. The implementation of the capability is driven by current Nuclear, Biological and Chemical Reconnaissance Vehicle operational tactics and represents a mission focused alternative of the already demonstrated 5-sensor static Range Test Validation System (RTVS).1 The new capability consists of hardware for sensor pointing and attitude information which is made available for streaming and aggregation as part of the data fusion process for threat characterization. Cloud information is generated using 2-sensor data ingested into a suite of triangulation and tomographic reconstruction algorithms. The approaches are amenable to using a limited number of viewing projections and unfavorable sensor geometries resulting from mobile operation. In this paper we describe the system architecture and present an analysis of results obtained during the initial testing of the system at Dugway Proving Ground during BioWeek 2013.

  2. Whole-brain 3D mapping of human neural transplant innervation

    PubMed Central

    Doerr, Jonas; Schwarz, Martin Karl; Wiedermann, Dirk; Leinhaas, Anke; Jakobs, Alina; Schloen, Florian; Schwarz, Inna; Diedenhofen, Michael; Braun, Nils Christian; Koch, Philipp; Peterson, Daniel A.; Kubitscheck, Ulrich; Hoehn, Mathias; Brüstle, Oliver

    2017-01-01

    While transplantation represents a key tool for assessing in vivo functionality of neural stem cells and their suitability for neural repair, little is known about the integration of grafted neurons into the host brain circuitry. Rabies virus-based retrograde tracing has developed into a powerful approach for visualizing synaptically connected neurons. Here, we combine this technique with light sheet fluorescence microscopy (LSFM) to visualize transplanted cells and connected host neurons in whole-mouse brain preparations. Combined with co-registration of high-precision three-dimensional magnetic resonance imaging (3D MRI) reference data sets, this approach enables precise anatomical allocation of the host input neurons. Our data show that the same neural donor cell population grafted into different brain regions receives highly orthotopic input. These findings indicate that transplant connectivity is largely dictated by the circuitry of the target region and depict rabies-based transsynaptic tracing and LSFM as efficient tools for comprehensive assessment of host–donor cell innervation. PMID:28102196

  3. Maps of clouds modeled with the IPSL Titan 3D-GCM

    NASA Astrophysics Data System (ADS)

    Burgalat, J.; Rannou, P.; Lebonnois, S.

    2011-10-01

    A new climate model for Titan's atmosphere has been developed at the IPSL. This model uses the current version of the LMDZ General Circulation Model (GCM) dynamical core with the physics part of the 2D Titan's IPSL-GCM. First simulations made at the LMD (Laboratoire de Météorologie Dynamique) used a version of the model with coupled haze microphysics only. We update the model with the implementation of the clouds microphysics scheme inherited frome the previous 2D version. The model is now fully coupled with clouds processes and is a full 3D extension of the Titan IPSL-GCM ([2], [3]). Currently the model is not optimized and is demanding in term of computational time (approximatively 17 days of execution for one Titan's year simulation) and the model can not be used with its full capacities. Therefore all the microphysics is still computed as zonal averages. Nevertheless, new simulations performed including clouds, shows some encouraging results. The lack of asymmetry of the clouds coverage in the results of the 2D simulations. seems to vanish using the new model which tends to show that dissipation process in the 2D model was too strong. With this new model, we intented to get a better tool to understand Titan's climate and to interpret the large amount of data collected by the probes.

  4. Maps of clouds modeled with the IPSL Titan 3D-GCM

    NASA Astrophysics Data System (ADS)

    Burgalat, J.; Rannou, P.; Lebonnois, S.

    2012-09-01

    A new climate model for Titan's atmosphere has been developed at the IPSL. This model uses the current version of the LMDZ General Circulation Model (GCM) dynamical core with the physics part of the 2D Titan's IPSL-GCM. First simulations made at the LMD (Laboratoire de Météorologie Dynamique) used a version of the model with coupled haze microphysics only. We update the model with the implementation of the clouds microphysics scheme inherited from the previous 2D version. The model is now fully coupled with clouds processes and is a full 3D extension of the Titan IPSL-GCM ([2], [3]). Currently the model is not optimized and is demanding in term of computational time (approximatively 17 days of execution for one Titan's year simulation) and the model can not be used with its full capacities. Therefore all the microphysics is still computed as zonal averages. Nevertheless, new simulations performed including clouds, shows some encouraging results. The lack of asymmetry of the clouds coverage in the results of the 2D simulations seems to vanish using the new model which tends to show that dissipation process in the 2D model was too strong. With this new model, we intented to get a better tool to understand Titan's climate and to interpret the large amount of data collected by the probes.

  5. Geo-Referenced Mapping Using AN Airborne 3d Time-Of Camera

    NASA Astrophysics Data System (ADS)

    Kohoutek, T. K.; Nitsche, M.; Eisenbeiss, H.

    2011-09-01

    This paper presents the first experience of a close range bird's eye view photogrammetry with range imaging (RIM) sensors for the real time generation of high resolution geo-referenced 3D surface models. The aim of this study was to develop a mobile, versatile and less costly outdoor survey methodology to measure natural surfaces compared to the terrestrial laser scanning (TLS). Two commercial RIM cameras (SR4000 by MESA Imaging AG and a CamCube 2.0 by PMDTechnologies GmbH) were mounted on a lightweight crane and on an unmanned aerial vehicle (UAV). The field experiments revealed various challenges in real time deployment of the two state-of-the-art RIM systems, e.g. processing of the large data volume. Acquisition strategy and data processing and first measurements are presented. The precision of the measured distances is less than 1 cm for good conditions. However, the measurement precision degraded under the test conditions due to direct sunlight, strong illumination contrasts and helicopter vibrations.

  6. Whole-brain 3D mapping of human neural transplant innervation.

    PubMed

    Doerr, Jonas; Schwarz, Martin Karl; Wiedermann, Dirk; Leinhaas, Anke; Jakobs, Alina; Schloen, Florian; Schwarz, Inna; Diedenhofen, Michael; Braun, Nils Christian; Koch, Philipp; Peterson, Daniel A; Kubitscheck, Ulrich; Hoehn, Mathias; Brüstle, Oliver

    2017-01-19

    While transplantation represents a key tool for assessing in vivo functionality of neural stem cells and their suitability for neural repair, little is known about the integration of grafted neurons into the host brain circuitry. Rabies virus-based retrograde tracing has developed into a powerful approach for visualizing synaptically connected neurons. Here, we combine this technique with light sheet fluorescence microscopy (LSFM) to visualize transplanted cells and connected host neurons in whole-mouse brain preparations. Combined with co-registration of high-precision three-dimensional magnetic resonance imaging (3D MRI) reference data sets, this approach enables precise anatomical allocation of the host input neurons. Our data show that the same neural donor cell population grafted into different brain regions receives highly orthotopic input. These findings indicate that transplant connectivity is largely dictated by the circuitry of the target region and depict rabies-based transsynaptic tracing and LSFM as efficient tools for comprehensive assessment of host-donor cell innervation.

  7. Development of a numerical procedure to map a general 3-d body onto a near-circle

    NASA Technical Reports Server (NTRS)

    Hommel, M. J.

    1986-01-01

    Conformal mapping is a classical technique utilized for solving problems in aerodynamics and hydrodynamics. Conformal mapping is utilized in the construction of grids around airfoils, engine inlets and other aircraft configurations. These shapes are transformed onto a near-circle image for which the equations of fluid motion are discretized on the mapped plane and solved numerically by utilizing the appropriate techniques. In comparison to other grid-generation techniques such as algerbraic or differential type, conformal mapping offers an analytical and accurate form even if the grid deformation is large. One of the most appealing features is that the grid can be constrained to remain orthogonal to the body after the transformation. Hence, the grid is suitable for analyzing the supersonic flow past a blunt object. The associated shock as a coordinate surface adjusts its position in the course of computation until convergence is reached. The present work applied conformal mapping to 3-D bodies with no axis of symmetry such as the Aerobraking Flight Experiment (AFE) vehicle, transforming the AFE shape onto a near-circle image. A numerical procedure and code are used to generate grids around the AFE body.

  8. Techniques for Revealing 3d Hidden Archeological Features: Morphological Residual Models as Virtual-Polynomial Texture Maps

    NASA Astrophysics Data System (ADS)

    Pires, H.; Martínez Rubio, J.; Elorza Arana, A.

    2015-02-01

    The recent developments in 3D scanning technologies are not been accompanied by visualization interfaces. We are still using the same types of visual codes as when maps and drawings were made by hand. The available information in 3D scanning data sets is not being fully exploited by current visualization techniques. In this paper we present recent developments regarding the use of 3D scanning data sets for revealing invisible information from archaeological sites. These sites are affected by a common problem, decay processes, such as erosion, that never ceases its action and endangers the persistence of last vestiges of some peoples and cultures. Rock art engravings, or epigraphical inscriptions, are among the most affected by these processes because they are, due to their one nature, carved at the surface of rocks often exposed to climatic agents. The study and interpretation of these motifs and texts is strongly conditioned by the degree of conservation of the imprints left by our ancestors. Every single detail in the remaining carvings can make a huge difference in the conclusions taken by specialists. We have selected two case-studies severely affected by erosion to present the results of the on-going work dedicated to explore in new ways the information contained in 3D scanning data sets. A new method for depicting subtle morphological features in the surface of objects or sites has been developed. It allows to contrast human patterns still present at the surface but invisible to naked eye or by any other archaeological inspection technique. It was called Morphological Residual Model (MRM) because of its ability to contrast the shallowest morphological details, to which we refer as residuals, contained in the wider forms of the backdrop. Afterwards, we have simulated the process of building Polynomial Texture Maps - a widespread technique that as been contributing to archaeological studies for some years - in a 3D virtual environment using the results of MRM

  9. Earthquake relocation using a 3D a-priori geological velocity model from the western Alps to Corsica: Implication for seismic hazard

    NASA Astrophysics Data System (ADS)

    Béthoux, Nicole; Theunissen, Thomas; Beslier, Marie-Odile; Font, Yvonne; Thouvenot, François; Dessa, Jean-Xavier; Simon, Soazig; Courrioux, Gabriel; Guillen, Antonio

    2016-02-01

    The region between the inner zones of the Alps and Corsica juxtaposes an overthickened crust to an oceanic domain, which makes difficult to ascertain the focal depth of seismic events using routine location codes and average 1D velocity models. The aim of this article is to show that, even with a rather lose monitoring network, accurate routine locations can be achieved by using realistic 3D modelling and advanced location techniques. Previous earthquake tomography studies cover the whole region with spatial resolutions of several tens of kilometres on land, but they fail to resolve the marine domain due to the absence of station coverage and sparse seismicity. To overcome these limitations, we first construct a 3D a-priori P and S velocity model integrating known geophysical and geological information. Significant progress has been achieved in the 3D numerical modelling of complex geological structures by the development of dedicated softwares (e.g. 3D GeoModeller), capable at once of elaborating a 3D structural model from geological and geophysical constraints and, possibly, of refining it by inversion processes (Calcagno et al., 2008). Then, we build an arrival-time catalogue of 1500 events recorded from 2000 to 2011. Hypocentres are then located in this model using a numerical code based on the maximum intersection method (Font et al., 2004), updated by Theunissen et al. (2012), as well as another 3D location technique, the NonLinLoc software (Lomax and Curtis, 2001). The reduction of arrival-time residuals and uncertainties (dh, dz) with respect to classical 1D locations demonstrates the improved accuracy allowed by our approach and confirms the coherence of the 3D geological model built and used in this study. Our results are also compared with previous works that benefitted from the installation of dense temporary networks surrounding the studied epicentre area. The resulting 3D location catalogue allows us to improve the regional seismic hazard assessment

  10. 3D modelling of soil texture: mapping and incertitude estimation in centre-France

    NASA Astrophysics Data System (ADS)

    Ciampalini, Rossano; Martin, Manuel P.; Saby, Nicolas P. A.; Richer de Forges, Anne C.; Nehlig, Pierre; Martelet, Guillaume; Arrouays, Dominique

    2014-05-01

    Soil texture is an important component of all soil physical-chemical processes. The spatial variability of soil texture plays a crucial role in the evaluation and modelling of all distributed processes. The object of this study is to determine the spatial variation of soil granulometric fractions (i.e., clay, silt, sand) in the region "Centre" of France in relation to the main controlling factors, and to create extended maps of these properties following GlobalSoilMap specifications. For this purpose we used 2487 soil profiles of the French soil database (IGCS - Inventory Management and Soil Conservation) and continuum depth values of the properties within the soil profiles have been calculated with a quadratic splines methodology optimising the spline parameters in each soil profile. We used environmental covariates to predict soil properties within the region at depth intervals 0-5, 5-15, 15-30, 30-60, 60-100, and 100-200 cm. Concerning environmental covariates, we used SRTM and ASTER DEM with 90m and 30m resolution, respectively, to generate terrain parameters and topographic indexes. Other covariates we used are Gamma Ray maps, Corine land cover, available geological and soil maps of the region at scales 1M, 250k and 50k. Soil texture is modeled with the application of the compositional data analysis theory namely, alr-transform (Aitchison, 1986) which considers in statistical calculation the complementary dependence between the different granulometric classes (i.e. 100% constraint). The prediction models of the alr-transformed variables have been developed with the use of boosting regression trees (BRT), then, using a LMM - Linear Mixed Model - that separates a fixed effect from a random effect related to the continuous spatially correlated variation of the property. In this case, the LMM is applied to the two co-regionalized properties (clay and sand alr-transforms). Model uncertainty mapping represents a practical way to describe efficiency and limits of

  11. Crustal high-velocity anomaly at the East European Craton margin in SE Poland (TESZ) modelled by 3-D seismic tomography of refracted and reflected arrivals

    NASA Astrophysics Data System (ADS)

    Środa, Piotr; Dec, Monika

    2016-04-01

    The area of Trans-European Suture Zone in SE Poland represents a contact of major tectonic units of different consolidation age - from the Precambrian East European Craton, through Palaeozoic West European Platform to Cenozoic Carpathian orogen. The region was built by several phases of crustal accretion, which resulted in a complex collage of tectonic blocks. In 2000, this region was studied by several seismic wide-angle profiles of CELEBRATION 2000 experiment, providing a dense coverage of seismic data in SE Poland and allowing for detailed investigations of the crustal structure and properties in this area. Beneath the marginal part of the EEC, the 2-D modelling of in-line data form several CELEBRATION profiles revealed a prominent high P-wave velocity anomaly in the upper crust, with Vp of 6.7-7.1 km/s, starting at 10-16 km depth (e.g., Środa et al., 2006). Anomalously high velocities are observed in the area located approximately beneath Lublin trough, to the NE of Teisseyre-Tornquist Zone. Based on 3-D tomography of first arrivals of in- and off-line CELEBRATION 2000 recordings (Malinowski et al., 2008), elevated velocities are also reported in the same area and seem to continue to the SW, off the craton margin. Gravimetric modelling also revealed anomalously high density in the same region at similar depths. High seismic velocities and densities are interpreted as indicative for a pronounced mafic intrusion, possibly related to extensional processes at the EEC margin. Previous 3-D models of the high-velocity intrusion were based on first arrivals (crustal refractions) only. In this study, also off-line reflections (not modelled up to now) are used, in order to enlarge the data set and to better constrain the geometry and properties of the velocity anomaly. A code for 3-D joint tomographic inversion of refracted and reflected arrivals, with model parametrization allowing for velocity discontinuities was used (Rawlinson, 2007). With this approach, besides the

  12. Fusion of terrestrial LiDAR and tomographic mapping data for 3D karst landform investigation

    NASA Astrophysics Data System (ADS)

    Höfle, B.; Forbriger, M.; Siart, C.; Nowaczinski, E.

    2012-04-01

    Highly detailed topographic information has gained in importance for studying Earth surface landforms and processes. LiDAR has evolved into the state-of-the-art technology for 3D data acquisition on various scales. This multi-sensor system can be operated on several platforms such as airborne LS (ALS), mobile LS (MLS) from moving vehicles or stationary on ground (terrestrial LS, TLS). In karst research the integral investigation of surface and subsurface components of solution depressions (e.g. sediment-filled dolines) is required to gather and quantify the linked geomorphic processes such as sediment flux and limestone dissolution. To acquire the depth of the different subsurface layers, a combination of seismic refraction tomography (SRT) and electrical resistivity tomography (ERT) is increasingly applied. This multi-method approach allows modeling the extension of different subsurface media (i.e. colluvial fill, epikarst zone and underlying basal bedrock). Subsequent fusion of the complementary techniques - LiDAR surface and tomographic subsurface data - first-time enables 3D prospection and visualization as well as quantification of geomorphometric parameters (e.g. depth, volume, slope and aspect). This study introduces a novel GIS-based method for semi-automated fusion of TLS and geophysical data. The study area is located in the Dikti Mountains of East Crete and covers two adjacent dolines. The TLS data was acquired with a Riegl VZ-400 scanner from 12 scan positions located mainly at the doline divide. The scan positions were co-registered using the iterative closest point (ICP) algorithm of RiSCAN PRO. For the digital elevation rasters a resolution of 0.5 m was defined. The digital surface model (DSM) of the study was derived by moving plane interpolation of all laser points (including objects) using the OPALS software. The digital terrain model (DTM) was generated by iteratively "eroding" objects in the DSM by minimum filter, which additionally accounts for

  13. Development of kinematic 3D laser scanning system for indoor mapping and as-built BIM using constrained SLAM.

    PubMed

    Jung, Jaehoon; Yoon, Sanghyun; Ju, Sungha; Heo, Joon

    2015-10-16

    The growing interest and use of indoor mapping is driving a demand for improved data-acquisition facility, efficiency and productivity in the era of the Building Information Model (BIM). The conventional static laser scanning method suffers from some limitations on its operability in complex indoor environments, due to the presence of occlusions. Full scanning of indoor spaces without loss of information requires that surveyors change the scanner position many times, which incurs extra work for registration of each scanned point cloud. Alternatively, a kinematic 3D laser scanning system, proposed herein, uses line-feature-based Simultaneous Localization and Mapping (SLAM) technique for continuous mapping. Moreover, to reduce the uncertainty of line-feature extraction, we incorporated constrained adjustment based on an assumption made with respect to typical indoor environments: that the main structures are formed of parallel or orthogonal line features. The superiority of the proposed constrained adjustment is its reduction for uncertainties of the adjusted lines, leading to successful data association process. In the present study, kinematic scanning with and without constrained adjustment were comparatively evaluated in two test sites, and the results confirmed the effectiveness of the proposed system. The accuracy of the 3D mapping result was additionally evaluated by comparison with the reference points acquired by a total station: the Euclidean average distance error was 0.034 m for the seminar room and 0.043 m for the corridor, which satisfied the error tolerance for point cloud acquisition (0.051 m) according to the guidelines of the General Services Administration for BIM accuracy.

  14. Development of Kinematic 3D Laser Scanning System for Indoor Mapping and As-Built BIM Using Constrained SLAM

    PubMed Central

    Jung, Jaehoon; Yoon, Sanghyun; Ju, Sungha; Heo, Joon

    2015-01-01

    The growing interest and use of indoor mapping is driving a demand for improved data-acquisition facility, efficiency and productivity in the era of the Building Information Model (BIM). The conventional static laser scanning method suffers from some limitations on its operability in complex indoor environments, due to the presence of occlusions. Full scanning of indoor spaces without loss of information requires that surveyors change the scanner position many times, which incurs extra work for registration of each scanned point cloud. Alternatively, a kinematic 3D laser scanning system, proposed herein, uses line-feature-based Simultaneous Localization and Mapping (SLAM) technique for continuous mapping. Moreover, to reduce the uncertainty of line-feature extraction, we incorporated constrained adjustment based on an assumption made with respect to typical indoor environments: that the main structures are formed of parallel or orthogonal line features. The superiority of the proposed constrained adjustment is its reduction for uncertainties of the adjusted lines, leading to successful data association process. In the present study, kinematic scanning with and without constrained adjustment were comparatively evaluated in two test sites, and the results confirmed the effectiveness of the proposed system. The accuracy of the 3D mapping result was additionally evaluated by comparison with the reference points acquired by a total station: the Euclidean average distance error was 0.034 m for the seminar room and 0.043 m for the corridor, which satisfied the error tolerance for point cloud acquisition (0.051 m) according to the guidelines of the General Services Administration for BIM accuracy. PMID:26501292

  15. A 3-D shear velocity model of the southern North America and the Caribbean plates from ambient noise and earthquake tomography

    NASA Astrophysics Data System (ADS)

    Gaite, B.; Villaseñor, A.; Iglesias, A.; Herraiz, M.; Jiménez-Munt, I.

    2014-10-01

    We use group velocities from earthquake tomography together with group and phase velocities from ambient noise tomography (ANT) of Rayleigh-waves to invert for the 3-D shear-wave velocity structure (5-70 km) of the Caribbean (CAR) and southern North American (NAM) plates. The lithospheric model proposed offers a complete image of the crust and uppermost-mantle with imprints of the tectonic evolution. One of the most striking features inferred is the main role of the Ouachita-Marathon-Sonora orogeny front on the crustal seismic structure of NAM plate. A new imaged feature is the low crustal velocities along USA-Mexico border. The model also shows a break of the E-W mantle velocity dichotomy of the NAM and CAR plates beneath the Isthmus of Tehuantepec and Yucatan Block. High upper-mantle velocities along the Mesoamerican Subduction Zone coincide with inactive volcanic areas while the lowest velocities correspond to active volcanic arcs and thin lithospheric mantle regions.

  16. Energy Dispersive X-ray Tomography for 3D Elemental Mapping of Individual Nanoparticles

    PubMed Central

    Slater, Thomas J. A.; Lewis, Edward A.; Haigh, Sarah J.

    2016-01-01

    Energy dispersive X-ray spectroscopy within the scanning transmission electron microscope (STEM) provides accurate elemental analysis with high spatial resolution, and is even capable of providing atomically resolved elemental maps. In this technique, a highly focused electron beam is incident upon a thin sample and the energy of emitted X-rays is measured in order to determine the atomic species of material within the beam path. This elementally sensitive spectroscopy technique can be extended to three dimensional tomographic imaging by acquiring multiple spectrum images with the sample tilted along an axis perpendicular to the electron beam direction. Elemental distributions within single nanoparticles are often important for determining their optical, catalytic and magnetic properties. Techniques such as X-ray tomography and slice and view energy dispersive X-ray mapping in the scanning electron microscope provide elementally sensitive three dimensional imaging but are typically limited to spatial resolutions of > 20 nm. Atom probe tomography provides near atomic resolution but preparing nanoparticle samples for atom probe analysis is often challenging. Thus, elementally sensitive techniques applied within the scanning transmission electron microscope are uniquely placed to study elemental distributions within nanoparticles of dimensions 10-100 nm. Here, energy dispersive X-ray (EDX) spectroscopy within the STEM is applied to investigate the distribution of elements in single AgAu nanoparticles. The surface segregation of both Ag and Au, at different nanoparticle compositions, has been observed. PMID:27403838

  17. Scatterer size and concentration estimation technique based on a 3D acoustic impedance map from histologic sections

    NASA Astrophysics Data System (ADS)

    Mamou, Jonathan; Oelze, Michael L.; O'Brien, William D.; Zachary, James F.

    2004-05-01

    Accurate estimates of scatterer parameters (size and acoustic concentration) are beneficial adjuncts to characterize disease from ultrasonic backscatterer measurements. An estimation technique was developed to obtain parameter estimates from the Fourier transform of the spatial autocorrelation function (SAF). A 3D impedance map (3DZM) is used to obtain the SAF of tissue. 3DZMs are obtained by aligning digitized light microscope images from histologic preparations of tissue. Estimates were obtained for simulated 3DZMs containing spherical scatterers randomly located: relative errors were less than 3%. Estimates were also obtained from a rat fibroadenoma and a 4T1 mouse mammary tumor (MMT). Tissues were fixed (10% neutral-buffered formalin), embedded in paraffin, serially sectioned and stained with H&E. 3DZM results were compared to estimates obtained independently against ultrasonic backscatter measurements. For the fibroadenoma and MMT, average scatterer diameters were 91 and 31.5 μm, respectively. Ultrasonic measurements yielded average scatterer diameters of 105 and 30 μm, respectively. The 3DZM estimation scheme showed results similar to those obtained by the independent ultrasonic measurements. The 3D impedance maps show promise as a powerful tool to characterize ultrasonic scattering sites of tissue. [Work supported by the University of Illinois Research Board.

  18. 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture.

    PubMed

    Topp, Christopher N; Iyer-Pascuzzi, Anjali S; Anderson, Jill T; Lee, Cheng-Ruei; Zurek, Paul R; Symonova, Olga; Zheng, Ying; Bucksch, Alexander; Mileyko, Yuriy; Galkovskyi, Taras; Moore, Brad T; Harer, John; Edelsbrunner, Herbert; Mitchell-Olds, Thomas; Weitz, Joshua S; Benfey, Philip N

    2013-04-30

    Identification of genes that control root system architecture in crop plants requires innovations that enable high-throughput and accurate measurements of root system architecture through time. We demonstrate the ability of a semiautomated 3D in vivo imaging and digital phenotyping pipeline to interrogate the quantitative genetic basis of root system growth in a rice biparental mapping population, Bala × Azucena. We phenotyped >1,400 3D root models and >57,000 2D images for a suite of 25 traits that quantified the distribution, shape, extent of exploration, and the intrinsic size of root networks at days 12, 14, and 16 of growth in a gellan gum medium. From these data we identified 89 quantitative trait loci, some of which correspond to those found previously in soil-grown plants, and provide evidence for genetic tradeoffs in root growth allocations, such as between the extent and thoroughness of exploration. We also developed a multivariate method for generating and mapping central root architecture phenotypes and used it to identify five major quantitative trait loci (r(2) = 24-37%), two of which were not identified by our univariate analysis. Our imaging and analytical platform provides a means to identify genes with high potential for improving root traits and agronomic qualities of crops.

  19. Towards a high performance vertex detector based on 3D integration of deep N-well MAPS

    NASA Astrophysics Data System (ADS)

    Re, V.

    2010-06-01

    The development of deep N-Well (DNW) CMOS active pixel sensors was driven by the ambitious goal of designing a monolithic device with similar functionalities as in hybrid pixel readout chips, such as pixel-level sparsification and time stamping. The implementation of the DNW MAPS concept in a 3D vertical integration process naturally leads the designer towards putting more intelligence in the chip and in the pixels themselves, achieving novel device structures based on the interconnection of two or more layers fabricated in the same technology. These devices are read out with a data-push scheme that makes it possible to use pixel data for the generation of a flexible level 1 track trigger, based on associative memories, with short latency and high efficiency. This paper gives an update of the present status of DNW MAPS design in both 2D and 3D versions, and presents a discussion of the architectures that are being devised for the Layer 0 of the SuperB Silicon Vertex Tracker.

  20. Constraints on the 3D shape of the ultra low shear velocity zone at the base of the mantle beneath the central Pacific

    NASA Astrophysics Data System (ADS)

    To, A.; Capdeville, Y.

    2011-12-01

    Prominent postcursors to S/Sdiff waves with delays as large as 26 s are observed in Northern America for Papua New Guinea events (To et al., 2011). The emergence of the postcursor is explained by placing a laterally localized ultra low shear velocity zone (ULSVZ, dVs/Vs<-25%) on the CMB, which is fully or partially covered by a broad and weak anomaly region (dVs/Vs~-5%). The ULSVZ is located approximately 900 km southwest of the projection of the Hawaiian hotspot onto the CMB. In the previous study, we limited our focus to an azimuthal range around 60 degrees from the source in Papua New Guinea, where the records show a relatively small azimuthal variation, suggesting a relatively small 3D effect there. The modelling was limited to 2D structure along the great circle plane, partly because of the sparse station distribution in Midwestern US at the time. In this study, we investigated data from USArray and further constrained the 3D shape of the ULSVZ. The postcursors to S/Sdiff waves are observed at 240 USArray stations for an event, which occurred near Papua New Guinea in 2010. The records from the large number of stations enabled us to conduct array analysis. First, we mapped the variation of incident azimuth and slowness of the secondary arrivals to the stations. In southern stations, which are located along the azimuth of approximately 60 degrees from the source, the postcursors arrive from the direction of the source. On the other hand, in northern stations, which are located at the azimuth of approximately 52 degrees from the source, the postcursors arrive from the azimuth of 5 to 10 degrees to the south with respect to the direction toward the source. Second, we compared the observed amplitude of the main S/Sdiff phase with synthetic waveforms created by Direct solution method (Kawai et al., 2006). The comparison shows that the amplitude of the main phase become very small at stations which are located approximately at the distance of 100 degrees and the

  1. 3-D shear wave velocity model of Mexico and South US: bridging seismic networks with ambient noise cross-correlations (C1) and correlation of coda of correlations (C3)

    NASA Astrophysics Data System (ADS)

    Spica, Zack; Perton, Mathieu; Calò, Marco; Legrand, Denis; Córdoba-Montiel, Francisco; Iglesias, Arturo

    2016-09-01

    This work presents an innovative strategy to enhance the resolution of surface wave tomography obtained from ambient noise cross-correlation (C1) by bridging asynchronous seismic networks through the correlation of coda of correlations (C3). Rayleigh wave group dispersion curves show consistent results between synchronous and asynchronous stations. Rayleigh wave group traveltimes are inverted to construct velocity-period maps with unprecedented resolution for a region covering Mexico and the southern United States. The resulting period maps are then used to regionalize dispersion curves in order to obtain local 1-D shear velocity models (VS) of the crust and uppermost mantle in every cell of a grid of 0.4°. The 1-D structures are obtained by iteratively adding layers until reaching a given misfit, and a global tomography model is considered as an input for depths below 150 km. Finally, a high-resolution 3-D VS model is obtained from these inversions. The major structures observed in the 3-D model are in agreement with the tectonic-geodynamic features and with previous regional and local studies. It also offers new insights to understand the present and past tectonic evolution of the region.

  2. 3D Vegetation Mapping Using UAVSAR, LVIS, and LIDAR Data Acquisition Methods

    NASA Technical Reports Server (NTRS)

    Calderon, Denice

    2011-01-01

    The overarching objective of this ongoing project is to assess the role of vegetation within climate change. Forests capture carbon, a green house gas, from the atmosphere. Thus, any change, whether, natural (e.g. growth, fire, death) or due to anthropogenic activity (e.g. logging, burning, urbanization) may have a significant impact on the Earth's carbon cycle. Through the use of Uninhabited Aerial Vehicle Synthetic Aperture Radar (UAVSAR) and NASA's Laser Vegetation Imaging Sensor (LVIS), which are airborne Light Detection and Ranging (LIDAR) remote sensing technologies, we gather data to estimate the amount of carbon contained in forests and how the content changes over time. UAVSAR and LVIS sensors were sent all over the world with the objective of mapping out terrain to gather tree canopy height and biomass data; This data is in turn used to correlate vegetation with the global carbon cycle around the world.

  3. Photocurrent mapping of 3D CdSe/CdTe windowless solar cells.

    PubMed

    Hangarter, Carlos M; Debnath, Ratan; Ha, Jong Y; Sahiner, Mehmet A; Reehil, Christopher J; Manners, William A; Josell, Daniel

    2013-09-25

    This paper details the use of scanning photocurrent microscopy to examine localized current collection efficiency of thin-film photovoltaic devices with in-plane patterning at a submicrometer length scale. The devices are based upon two interdigitated comb electrodes at the micrometer length scale prepatterned on a substrate, with CdSe electrodeposited on one electrode and CdTe deposited over the entire surface of the resulting structure by pulsed laser deposition. Photocurrent maps provide information on what limits the performance of the windowless CdSe/CdTe thin-film photovoltaic devices, revealing "dead zones" particularly above the electrodes contacting the CdTe which is interpreted as recombination over the back contact. Additionally, the impact of ammonium sulfide passivation is examined, which enables device efficiency to reach 4.3% under simulated air mass 1.5 illumination.

  4. A 3D map of the islet routes throughout the healthy human pancreas

    PubMed Central

    Ionescu-Tirgoviste, Constantin; Gagniuc, Paul A.; Gubceac, Elvira; Mardare, Liliana; Popescu, Irinel; Dima, Simona; Militaru, Manuella

    2015-01-01

    Islets of Langerhans are fundamental in understanding diabetes. A healthy human pancreas from a donor has been used to asses various islet parameters and their three-dimensional distribution. Here we show that islets are spread gradually from the head up to the tail section of the pancreas in the form of contracted or dilated islet routes. We also report a particular anatomical structure, namely the cluster of islets. Our observations revealed a total of 11 islet clusters which comprise of small islets that surround large blood vessels. Additional observations in the peripancreatic adipose tissue have shown lymphoid-like nodes and blood vessels captured in a local inflammatory process. Our observations are based on regional slice maps of the pancreas, comprising of 5,423 islets. We also devised an index of sphericity which briefly indicates various islet shapes that are dominant throughout the pancreas. PMID:26417671

  5. High-Resolution 3D Bathymetric Mapping for Small Streams Using Low-Altitude Aerial Photography

    NASA Astrophysics Data System (ADS)

    Dietrich, J. T.; Duffin, J.

    2015-12-01

    Geomorphic monitoring of river restoration projects is a critical component of measuring their success. In smaller streams, with depths less than 2 meters, one of the more difficult variables to map at high-resolution is bathymetry. In larger rivers, bathymetry can be measured with instruments like multi-beam sonar, bathymetric airborne LiDAR, or acoustic doppler current profilers (ADCP). However, these systems are often limited by their minimum operating depths, which makes them ineffective in shallow water. Remote sensing offers several potential solutions for collecting bathymetry, spectral depth mapping and photogrammetric measurement (e.g. Structure-from-Motion (SfM) multi-view photogrammetry). In this case study, we use SfM to produce both high-resolution above water topography and below water bathymetry for two reaches of a stream restoration project on the Middle Fork of the John Day River in eastern Oregon and one reach on the White River in Vermont. We collected low-allitude multispectral (RGB+NIR) aerial photography at all of the sites at altitudes of 30 to 50 meters. The SfM survey was georeferenced with RTK-GPS ground control points and the bathymetry was refraction-corrected using additional RTK-GPS sample points. The resulting raster data products have horizontal resolutions of ~4-8 centimeters for the topography and ~8-15 cm for the bathymetry. This methodology, like many fluvial remote sensing methods, will only work under ideal conditions (e.g. clear water), but it provides an additional tool for collecting high-resolution bathymetric datasets for geomorphic monitoring efforts.

  6. Source fields reconstruction with 3D mapping by means of the virtual acoustic volume concept

    NASA Astrophysics Data System (ADS)

    Forget, S.; Totaro, N.; Guyader, J. L.; Schaeffer, M.

    2016-10-01

    This paper presents the theoretical framework of the virtual acoustic volume concept and two related inverse Patch Transfer Functions (iPTF) identification methods (called u-iPTF and m-iPTF depending on the chosen boundary conditions for the virtual volume). They are based on the application of Green's identity on an arbitrary closed virtual volume defined around the source. The reconstruction of sound source fields combines discrete acoustic measurements performed at accessible positions around the source with the modal behavior of the chosen virtual acoustic volume. The mode shapes of the virtual volume can be computed by a Finite Element solver to handle the geometrical complexity of the source. As a result, it is possible to identify all the acoustic source fields at the real surface of an irregularly shaped structure and irrespective of its acoustic environment. The m-iPTF method is introduced for the first time in this paper. Conversely to the already published u-iPTF method, the m-iPTF method needs only acoustic pressure and avoids particle velocity measurements. This paper is focused on its validation, both with numerical computations and by experiments on a baffled oil pan.

  7. Regional 3D Numerical Modeling of the Lithosphere-Mantle System: Implications for Continental Rift-Parallel Surface Velocities

    NASA Astrophysics Data System (ADS)

    Stamps, S.; Bangerth, W.; Hager, B. H.

    2014-12-01

    The East African Rift System (EARS) is an active divergent plate boundary with slow, approximately E-W extension rates ranging from <1-6 mm/yr. Previous work using thin-sheet modeling indicates lithospheric buoyancy dominates the force balance driving large-scale Nubia-Somalia divergence, however GPS observations within the Western Branch of the EARS show along-rift motions that contradict this simple model. Here, we test the role of mantle flow at the rift-scale using our new, regional 3D numerical model based on the open-source code ASPECT. We define a thermal lithosphere with thicknesses that are systematically changed for generic models or based on geophysical constraints in the Western branch (e.g. melting depths, xenoliths, seismic tomography). Preliminary results suggest existing variations in lithospheric thicknesses along-rift in the Western Branch can drive upper mantle flow that is consistent with geodetic observations.

  8. Temperature Mapping of 3D Printed Polymer Plates: Experimental and Numerical Study

    PubMed Central

    Kousiatza, Charoula; Chatzidai, Nikoleta; Karalekas, Dimitris

    2017-01-01

    In Fused Deposition Modeling (FDM), which is a common thermoplastic Additive Manufacturing (AM) method, the polymer model material that is in the form of a flexible filament is heated above its glass transition temperature (Tg) to a semi-molten state in the head’s liquefier. The heated material is extruded in a rastering configuration onto the building platform where it rapidly cools and solidifies with the adjoining material. The heating and rapid cooling cycles of the work materials exhibited during the FDM process provoke non-uniform thermal gradients and cause stress build-up that consequently result in part distortions, dimensional inaccuracy and even possible part fabrication failure. Within the purpose of optimizing the FDM technique by eliminating the presence of such undesirable effects, real-time monitoring is essential for the evaluation and control of the final parts’ quality. The present work investigates the temperature distributions developed during the FDM building process of multilayered thin plates and on this basis a numerical study is also presented. The recordings of temperature changes were achieved by embedding temperature measuring sensors at various locations into the middle-plane of the printed structures. The experimental results, mapping the temperature variations within the samples, were compared to the corresponding ones obtained by finite element modeling, exhibiting good correlation. PMID:28245557

  9. Robot-Aided Mapping of Wrist Proprioceptive Acuity across a 3D Workspace

    PubMed Central

    Marini, Francesca; Squeri, Valentina; Morasso, Pietro; Konczak, Jürgen; Masia, Lorenzo

    2016-01-01

    Proprioceptive signals from peripheral mechanoreceptors form the basis for bodily perception and are known to be essential for motor control. However we still have an incomplete understanding of how proprioception differs between joints, whether it differs among the various degrees-of-freedom (DoFs) within a particular joint, and how such differences affect motor control and learning. We here introduce a robot-aided method to objectively measure proprioceptive function: specifically, we systematically mapped wrist proprioceptive acuity across the three DoFs of the wrist/hand complex with the aim to characterize the wrist position sense. Thirty healthy young adults performed an ipsilateral active joint position matching task with their dominant wrist using a haptic robotic exoskeleton. Our results indicate that the active wrist position sense acuity is anisotropic across the joint, with the abduction/adduction DoF having the highest acuity (the error of acuity for flexion/extension is 4.64 ± 0.24°; abduction/adduction: 3.68 ± 0.32°; supination/pronation: 5.15 ± 0.37°) and they also revealed that proprioceptive acuity decreases for smaller joint displacements. We believe this knowledge is imperative in a clinical scenario when assessing proprioceptive deficits and for understanding how such sensory deficits relate to observable motor impairments. PMID:27536882

  10. 3D unmanned aerial vehicle radiation mapping for assessing contaminant distribution and mobility

    NASA Astrophysics Data System (ADS)

    Martin, P. G.; Kwong, S.; Smith, N. T.; Yamashiki, Y.; Payton, O. D.; Russell-Pavier, F. S.; Fardoulis, J. S.; Richards, D. A.; Scott, T. B.

    2016-10-01

    Following the events of March 2011 at the Fukushima Daiichi Nuclear Power Plant, significant quantities of radioactive material were released into the local and wider global environment. At five years since the incident, much expense is being currently devoted to the remediation of a large portion of eastern Japan contaminated primarily by radiocesium, yet further significant expenditure will be required over the succeeding decades to complete this clean-up. People displaced from their homes by the incident are now increasingly keen to return, making it more important than ever to provide accurate quantification and representation of any residual radiological contamination. Presented here is the use of an unmanned aerial vehicle equipped with a laser rangefinder unit to generate a three dimensional point-cloud of an area onto which a radiation contamination map, also obtained concurrently via the unmanned aerial platform, can be rendered. An exemplar site of an un-remediated farm consisting of multiple stepped rice paddy fields with a dedicated irrigation system was used for this work. The results obtained show that heightened radiological contamination exists around the site within the drainage network where material is observed to have collected, having been transported by transient water runoff events. These results obtained in May 2014 suggest that a proportion of the fallout material is highly mobile within the natural environment and is likely to be transported further through the system over the succeeding years.

  11. Mapping the Extinction Curve in 3D: Structure on Kiloparsec Scales

    NASA Astrophysics Data System (ADS)

    Schlafly, E. F.; Peek, J. E. G.; Finkbeiner, D. P.; Green, G. M.

    2017-03-01

    Near-infrared spectroscopy from APOGEE and wide-field optical photometry from Pan-STARRS1 have recently made precise measurements of the shape of the extinction curve possible for tens of thousands of stars, parameterized by R(V). These measurements revealed structures in R(V) with large angular scales, which are challenging to explain in existing dust paradigms. In this work, we combine three-dimensional maps of dust column density with R(V) measurements to constrain the three-dimensional distribution of R(V) in the Milky Way. We find that the variations in R(V) are correlated on kiloparsec scales. In particular, most of the dust within one kiloparsec in the outer Galaxy, including many local molecular clouds (Orion, Taurus, Perseus, California, and Cepheus), has a significantly lower R(V) than more distant dust in the Milky Way. These results provide new input to models of dust evolution and processing, and complicate the application of locally derived extinction curves to more distant regions of the Milky Way and to other galaxies.

  12. Electrical Structure Inferred by 3-D Lightning Mapping Observations During STEPS

    NASA Astrophysics Data System (ADS)

    Hamlin, T.; Krehbiel, P. R.; Zhang, Y.; Thomas, R. J.

    2002-12-01

    The Severe Thunderstorm Electrification and Precipitation Study (STEPS) provided numerous examples of storms which electrified anomalously, developing inverted tripole or quadrupole electrical structures. The storms were often supercells and cases where the lightning activity consisted primarily of IC flashes for substantial periods of time, only followed (if at all) much later by the onset of CG activity, were observed on several occasions. Radar comparisons for the tornadic storm of June 29 and the Bird City storm of June 3 during STEPS indicate that the main positive charge was localized in the precipitation core, but the electrification also had a definite horizontally extensive, multilayer structure extending away from the core. In these storms the upper positive charge region developed rapidly and produced intense lightning activity. The upper positive gradually evolved downward in altitude to become the dominant mid-level charge, forming an inverted tripole structure which appears to be stable for long periods of time. By assuming that a given polarity breakdown is moving into regions of opposite polarity charge (with exceptions) the total charge structure can be inferred and mapped based on information gleaned from the individual flashes; this allows use of the LMA data to detail the charge structure of storms. We take this approach to study the evolution of charge structures for storms during STEPS.

  13. Temperature Mapping of 3D Printed Polymer Plates: Experimental and Numerical Study.

    PubMed

    Kousiatza, Charoula; Chatzidai, Nikoleta; Karalekas, Dimitris

    2017-02-24

    In Fused Deposition Modeling (FDM), which is a common thermoplastic Additive Manufacturing (AM) method, the polymer model material that is in the form of a flexible filament is heated above its glass transition temperature (Tg) to a semi-molten state in the head's liquefier. The heated material is extruded in a rastering configuration onto the building platform where it rapidly cools and solidifies with the adjoining material. The heating and rapid cooling cycles of the work materials exhibited during the FDM process provoke non-uniform thermal gradients and cause stress build-up that consequently result in part distortions, dimensional inaccuracy and even possible part fabrication failure. Within the purpose of optimizing the FDM technique by eliminating the presence of such undesirable effects, real-time monitoring is essential for the evaluation and control of the final parts' quality. The present work investigates the temperature distributions developed during the FDM building process of multilayered thin plates and on this basis a numerical study is also presented. The recordings of temperature changes were achieved by embedding temperature measuring sensors at various locations into the middle-plane of the printed structures. The experimental results, mapping the temperature variations within the samples, were compared to the corresponding ones obtained by finite element modeling, exhibiting good correlation.

  14. Development and application of a ray-tracing code integrating with 3D equilibrium mapping in LHD ECH experiments

    NASA Astrophysics Data System (ADS)

    Tsujimura, T., Ii; Kubo, S.; Takahashi, H.; Makino, R.; Seki, R.; Yoshimura, Y.; Igami, H.; Shimozuma, T.; Ida, K.; Suzuki, C.; Emoto, M.; Yokoyama, M.; Kobayashi, T.; Moon, C.; Nagaoka, K.; Osakabe, M.; Kobayashi, S.; Ito, S.; Mizuno, Y.; Okada, K.; Ejiri, A.; Mutoh, T.

    2015-11-01

    The central electron temperature has successfully reached up to 7.5 keV in large helical device (LHD) plasmas with a central high-ion temperature of 5 keV and a central electron density of 1.3× {{10}19} m-3. This result was obtained by heating with a newly-installed 154 GHz gyrotron and also the optimisation of injection geometry in electron cyclotron heating (ECH). The optimisation was carried out by using the ray-tracing code ‘LHDGauss’, which was upgraded to include the rapid post-processing three-dimensional (3D) equilibrium mapping obtained from experiments. For ray-tracing calculations, LHDGauss can automatically read the relevant data registered in the LHD database after a discharge, such as ECH injection settings (e.g. Gaussian beam parameters, target positions, polarisation and ECH power) and Thomson scattering diagnostic data along with the 3D equilibrium mapping data. The equilibrium map of the electron density and temperature profiles are then extrapolated into the region outside the last closed flux surface. Mode purity, or the ratio between the ordinary mode and the extraordinary mode, is obtained by calculating the 1D full-wave equation along the direction of the rays from the antenna to the absorption target point. Using the virtual magnetic flux surfaces, the effects of the modelled density profiles and the magnetic shear at the peripheral region with a given polarisation are taken into account. Power deposition profiles calculated for each Thomson scattering measurement timing are registered in the LHD database. The adjustment of the injection settings for the desired deposition profile from the feedback provided on a shot-by-shot basis resulted in an effective experimental procedure.

  15. 3D Mapping of calcite and a demonstration of its relevance to permeability evolution in reactive fractures

    NASA Astrophysics Data System (ADS)

    Ellis, Brian R.; Peters, Catherine A.

    2016-09-01

    There is a need to better understand reaction-induced changes in fluid transport in fractured shales, caprocks and reservoirs, especially in the context of emerging energy technologies, including geologic carbon sequestration, unconventional natural gas, and enhanced geothermal systems. We developed a method for 3D calcite mapping in rock specimens. Such information is critical in reactive transport modeling, which relies on information about the locations and accessible surface area of reactive minerals. We focused on calcite because it is a mineral whose dissolution could lead to substantial pathway alteration because of its high solubility, fast reactivity, and abundance in sedimentary rocks. Our approach combines X-ray computed tomography (XCT) and scanning electron microscopy. The method was developed and demonstrated for a fractured limestone core containing about 50% calcite, which was 2.5 cm in diameter and 3.5 cm in length and had been scanned using XCT. The core was subsequently sectioned and energy dispersive X-ray spectroscopy was used to determine elemental signatures for mineral identification and mapping. Back-scattered electron microscopy was used to identify features for co-location. Finally, image analysis resulted in characteristic grayscale intensities of X-ray attenuation that identify calcite. This attenuation mapping ultimately produced a binary segmented 3D image of the spatial distribution of calcite in the entire core. To demonstrate the value of this information, permeability changes were investigated for hypothetical fractures created by eroding calcite from 2D rock surfaces. Fluid flow was simulated using a 2D steady state model. The resulting increases in permeability were profoundly influenced by the degree to which calcite is contiguous along the flow path. If there are bands of less reactive minerals perpendicular to the direction of flow, fracture permeability may be an order of magnitude smaller than when calcite is contiguous

  16. A Global 3D P-Velocity Model of the Earth’s Crust and Mantle for Improved Event Location

    DTIC Science & Technology

    2011-09-01

    locations were based on the ak135 model (Kennett et al., 1995). This shifting of locations tends to occur mostly along subduction zones , where the...features, many structural features present themselves. Clearly visible in the figures are subduction zones , mid-ocean ridges, slower velocities in...produced. Colors are percent change from the ak135 model. Clearly visible are tectonic features such as mid-ocean ridges, subduction zones , and large

  17. The Updated LLNL-G3D Global P-Wave Velocity Model and Its Performance in Seismic Event Location

    DTIC Science & Technology

    2011-09-01

    in our previous reports) and sharp details of subducted slabs around the world. Based on preliminary relocation tests, using LLNL-G3Dv2 travel-time...details of subducted slabs around the world. Based on preliminary relocation tests, using LLNL-G3Dv2 travel-time predictions typically reduces...simultaneously. In addition, sensitivity is spread across broad depth zones and/or multiple model units to mitigate the issue of path-velocity

  18. Rayleigh-wave phase-velocity maps and three-dimensional shear velocity structure of the western US from local non-plane surface wave tomography

    USGS Publications Warehouse

    Pollitz, F.F.; Snoke, J. Arthur

    2010-01-01

    We utilize two-and-three-quarter years of vertical-component recordings made by the Transportable Array (TA) component of Earthscope to constrain three-dimensional (3-D) seismic shear wave velocity structure in the upper 200 km of the western United States. Single-taper spectral estimation is used to compile measurements of complex spectral amplitudes from 44 317 seismograms generated by 123 teleseismic events. In the first step employed to determine the Rayleigh-wave phase-velocity structure, we implement a new tomographic method, which is simpler and more robust than scattering-based methods (e.g. multi-plane surface wave tomography). The TA is effectively implemented as a large number of local arrays by defining a horizontal Gaussian smoothing distance that weights observations near a given target point. The complex spectral-amplitude measurements are interpreted with the spherical Helmholtz equation using local observations about a succession of target points, resulting in Rayleigh-wave phase-velocity maps at periods over the range of 18–125 s. The derived maps depend on the form of local fits to the Helmholtz equation, which generally involve the nonplane-wave solutions of Friederich et al. In a second step, the phase-velocity maps are used to derive 3-D shear velocity structure. The 3-D velocity images confirm details witnessed in prior body-wave and surface-wave studies and reveal new structures, including a deep (>100 km deep) high-velocity lineament, of width ∼200 km, stretching from the southern Great Valley to northern Utah that may be a relic of plate subduction or, alternatively, either a remnant of the Mojave Precambrian Province or a mantle downwelling. Mantle seismic velocity is highly correlated with heat flow, Holocene volcanism, elastic plate thickness and seismicity. This suggests that shallow mantle structure provides the heat source for associated magmatism, as well as thinning of the thermal lithosphere, leading to relatively high

  19. Prospects of 3D mapping of the Galactic Centre clouds with X-ray polarimetry

    NASA Astrophysics Data System (ADS)

    Marin, F.; Karas, V.; Kunneriath, D.; Muleri, F.

    2014-07-01

    Despite past panchromatic observations of the innermost part of the Milky Way, the overall structure of the Galactic Centre (GC) remains enigmatic in terms of geometry. In this paper, we aim to show how polarimetry can probe the three-dimensional position of the molecular material in the central ˜100 pc of the GC. We investigate a model where the central supermassive black hole Sgr A* is radiatively coupled to a fragmented circumnuclear disc (CND), an elliptical twisted ring representative of the central molecular zone (CMZ), and the two main, bright molecular clouds Sgr B2 and Sgr C. 8-35 keV integrated polarization mapping reveals that Sgr B2 and Sgr C, situated at the two sides of the CMZ, present the highest polarization degrees (66.5 and 47.8 per cent, respectively), both associated with a polarization position angle ψ = 90° (normal to the scattering plane). The CND shows a lower polarization degree, 1.0 per cent with ψ = -20.5°, tracing the inclination of the CND with respect to the Galactic plane. The CMZ polarization is spatially variable. We also consider a range of spatial locations for Sgr A* and the reprocessing media, and investigate how the modelled three-dimensional geometry influences the resulting GC polarization. The two reflection nebulae are found to always produce high polarization degrees (≫10 per cent). We show that a 500 ks observation with a broad-band polarimeter could constrain the location and the morphology of the scattering material with respect to the emitting source, revealing the past activity of Sgr A*.

  20. Mapping the Monoceros Ring in 3D with Pan-STARRS1

    NASA Astrophysics Data System (ADS)

    Morganson, Eric; Conn, Blair; Rix, Hans-Walter; Bell, Eric F.; Burgett, William S.; Chambers, Kenneth; Dolphin, Andrew; Draper, Peter W.; Flewelling, Heather; Hodapp, Klaus; Kaiser, Nick; Magnier, Eugene A.; Martin, Nicolas F.; Martinez-Delgado, David; Metcalfe, Nigel; Schlafly, Edward F.; Slater, Colin T.; Wainscoat, Richard J.; Waters, Christopher Z.

    2016-07-01

    Using the Pan-STARRS1 survey, we derive limiting magnitude, spatial completeness, and density maps that we use to probe the three-dimensional structure and estimate the stellar mass of the so-called Monoceros Ring. The Monoceros Ring is an enormous and complex stellar sub-structure in the outer Milky Way disk. It is most visible across the large Galactic Anticenter region, 120^\\circ \\lt l\\lt 240^\\circ , -30^\\circ \\lt b\\lt +40^\\circ . We estimate its stellar mass density profile along every line of sight in 2° × 2° pixels over the entire 30,000 deg2 Pan-STARRS1 survey using the previously developed match software. By parsing this distribution into a radially smooth component and the Monoceros Ring, we obtain its mass and distance from the Sun along each relevant line of sight. The Monoceros Ring is significantly closer to us in the south (6 kpc) than in the north (9 kpc). We also create 2D cross-sections parallel to the Galactic plane that show 135° of the Monoceros Ring in the south and 170° of the Monoceros Ring in the north. We show that the northern and southern structures are also roughly concentric circles, suggesting that they may be waves rippling from a common origin. Excluding the Galactic plane ˜ +/- 4^\\circ , we observe an excess mass of 4× {10}6{M}⊙ across 120^\\circ \\lt l\\lt 240^\\circ . If we interpolate across the Galactic plane, we estimate that this region contains 8× {10}6{M}⊙ . If we assume (somewhat boldly) that the Monoceros Ring is a set of two Galactocentric rings, its total mass is 6× {10}7{M}⊙ . Finally, if we assume that it is a set of two circles centered at a point 4 kpc from the Galactic center in the anti-central direction, as our data suggests, we estimate its mass to be 4× {10}7{M}⊙ .

  1. Waveform inversion for 3-D S-velocity structure of D'' beneath the Northern Pacific: possible evidence for a remnant slab and a passive plume

    NASA Astrophysics Data System (ADS)

    Suzuki, Yuki; Kawai, Kenji; Geller, Robert J.; Borgeaud, Anselme F. E.; Konishi, Kensuke

    2016-12-01

    We conduct waveform inversion to infer the three-dimensional (3-D) S-velocity structure in the lowermost 400 km of the mantle (the D'' region) beneath the Northern Pacific region. Our dataset consists of about 20,000 transverse component broadband body-wave seismograms observed at North American stations for 131 intermediate and deep earthquakes which occurred beneath the western Pacific subduction region. We use S, ScS, and other phases that arrive between them. Resolution tests indicate that our methods and dataset can resolve the velocity structure in the target region with a horizontal scale of about 150 km and a vertical scale of about 50 km. The 3-D S-velocity model obtained in this study shows three prominent features: (1) prominent sheet-like lateral high-velocity anomalies up to ˜3% faster than the Preliminary Reference Earth Model (PREM) with a thickness of ˜200 km, whose lower boundary is ˜150 km above the core-mantle boundary (CMB). (2) A prominent low-velocity anomaly block located to the west of the Kamchatka peninsula, which is ˜2.5% slower than PREM, immediately above the CMB beneath the high-velocity anomalies. (3) A relatively thin (˜300 km) low-velocity structure continuous from the low-velocity anomaly "(2)" to at least 400 km above the CMB. We also detect a continuous low-velocity anomaly from the east of the Kamchatka peninsula at an altitude of 50 km above the CMB to the far east of the Kuril islands at an altitude of 400 km above the CMB. We interpret these features respectively as: (1) remnants of slab material where the bridgmanite to Mg-post-perovskite phase transition may have occurred within the slab, (2, 3) large amounts of hot and less dense materials beneath the cold Kula or Pacific slab remnants just above the CMB which ascend and form a passive plume upwelling at the edge of the slab remnants.[Figure not available: see fulltext.

  2. 3D seismic velocity structure in the rupture area of the 2014 M8.2 Iquique earthquake in Northern Chile

    NASA Astrophysics Data System (ADS)

    Woollam, Jack; Fuenzallida, Amaya; Garth, Tom; Rietbrock, Andreas; Ruiz, Sergio; Tavera, Hernando

    2016-04-01

    Seismic velocity tomography is one of the key tools in Earth sciences to image the physical properties of the subsurface. In recent years significant advances have been made to image the Chilean subductions zone, especially in the area of the 2010 M8.8 Maule earthquake (e.g. Hicks et al., 2014), providing much needed physical constraints for earthquakes source inversions and rupture models. In 2014 the M8.2 Iquique earthquake struck the northern part of the Chilean subduction zone in close proximity to the Peruvian boarder. The pre- and aftershock sequence of this major earthquake was recorded by a densified seismological network in Northern Chile and Southern Peru, which provides an excellent data set to study in depth the 3D velocity structure along the subduction megathrust. Based on an automatic event catalogue of nearly 10,000 events spanning the time period March to May 2014 we selected approximately 450 events for a staggered 3D inversion approach. Events are selected to guarantee an even ray coverage through the inversion volume. We only select events with a minimum GAP of 200 to improve depth estimates and therefore increase resolution in the marine forearc. Additionally, we investigate secondary arrivals between the P- and S-wave arrival to improve depth location. Up to now we have processed about 450 events, from which about 150 with at least 30 P- and S-wave observations have been selected for the subsequent 3D tomography. Overall the data quality is very high, which allows arrival time estimates better than 0.05s on average. We will show results from the 1D, 2D, and preliminary 3D inversions and discuss the results together with the obtained seismicity distribution.

  3. A high resolution 3D velocity model beneath the Tokyo Metropolitan area by MeSO-net

    NASA Astrophysics Data System (ADS)

    Nakagawa, S.; Sakai, S.; Honda, R.; Kimura, H.; Hirata, N.

    2015-12-01

    Beneath the Tokyo metropolitan area, the Philippine Sea Plate (PSP) subducts and causes devastating mega-thrust earthquakes, such as the 1703 Genroku earthquake (M8.0) and the 1923 Kanto earthquake (M7.9). An M7 or greater (M7+) earthquake in this area at present has high potential to produce devastating serious loss of life and property with even greater global economic repercussions. The Central Disaster Management Council of Japan estimates that an M7+ earthquake will cause 23,000 fatalities and 95 trillion yen (about 1 trillion US$) economic loss. We have launched the Special Project for Reducing Vulnerability for Urban Mega Earthquake Disasters in collaboration with scientists, engineers, and social-scientists in nationwide institutions since 2012. We analyze data from the dense seismic array called Metropolitan Seismic Observation network (MeSO-net), which has 296 seismic stations with spacing of 5 km (Sakai and Hirata, 2009; Kasahara et al., 2009). We applied the double-difference tomography method (Zhang and Thurber, 2003) and estimated the velocity structure and the upper boundary of PSP (Nakagawa et al., 2010). The 2011 Tohoku-oki earthquake (M9.0) has activated seismicity also in Kanto region, providing better coverage of ray paths for tomographic analysis. We obtain much higher resolution velocity models from whole dataset observed by MeSO-net between 2008 and 2015. A detailed image of tomograms shows that PSP contacts Pacific plate at a depth of 50 km beneath northern Tokyo bay. A variation of velocity along the oceanic crust suggests dehydration reaction to produce seismicity in a slab, which may related to the M7+ earthquake. Acknowledgement: This study was supported by the Special Project for Reducing Vulnerability for Urban Mega Earthquake Disasters of MEXT, Japan and the Earthquake Research Institute cooperative research program.

  4. Novel real-time 3D radiological mapping solution for ALARA maximization, D and D assessments and radiological management

    SciTech Connect

    Dubart, Philippe; Hautot, Felix; Morichi, Massimo; Abou-Khalil, Roger

    2015-07-01

    Good management of dismantling and decontamination (D and D) operations and activities is requiring safety, time saving and perfect radiological knowledge of the contaminated environment as well as optimization for personnel dose and minimization of waste volume. In the same time, Fukushima accident has imposed a stretch to the nuclear measurement operational approach requiring in such emergency situation: fast deployment and intervention, quick analysis and fast scenario definition. AREVA, as return of experience from his activities carried out at Fukushima and D and D sites has developed a novel multi-sensor solution as part of his D and D research, approach and method, a system with real-time 3D photo-realistic spatial radiation distribution cartography of contaminated premises. The system may be hand-held or mounted on a mobile device (robot, drone, e.g). In this paper, we will present our current development based on a SLAM technology (Simultaneous Localization And Mapping) and integrated sensors and detectors allowing simultaneous topographic and radiological (dose rate and/or spectroscopy) data acquisitions. This enabling technology permits 3D gamma activity cartography in real-time. (authors)

  5. Isotropic photon drag: Analytic expressions for velocity (3D) and position (1D) with applications to blackbody friction

    NASA Astrophysics Data System (ADS)

    West, Joseph

    2014-03-01

    The motion of objects traveling at relativistic speeds and subject only to isotropic photon drag (blackbody friction as a special case) is modeled. The objects are assumed to be perfectly absorbing. Analytic expressions for velocity and position as a function of time for objects subject to photon drag are obtained for the case in which the photons are constrained to one-dimensional motion. If the object is also assumed to be a perfect emitter of energy, analytic expressions are found for time as a function of velocity of the body for photons constrained to one-dimensional motion, and for a full three-dimensional isotropic photon background. The derivations are carried out entirely from the point of view of a reference frame at rest relative to the isotropic photon field, so that no changes of reference frame are involved. The results for the three-dimensional model do not agree with work by previous authors, and this discrepancy is discussed. The derivations are suitable for use in the undergraduate classroom. Example cases for a light sail and a micron-sized sand grain are examined for interactions with the cosmic background radiation, assuming a temperature of 3000 K, the temperature at the time the universe became transparent, and it is found that relativistic speeds would decay on a time scale of years.

  6. 3D velocity distribution of P- and S-waves in a biotite gneiss, measured in oil as the pressure medium: Comparison with velocity measurements in a multi-anvil pressure apparatus and with texture-based calculated data

    NASA Astrophysics Data System (ADS)

    Lokajíček, T.; Kern, H.; Svitek, T.; Ivankina, T.

    2014-06-01

    Ultrasonic measurements of the 3D velocity distribution of P- and S-waves were performed on a spherical sample of a biotite gneiss from the Outokumpu scientific drill hole. Measurements were done at room temperature and pressures up to 400 and 70 MPa, respectively, in a pressure vessel with oil as a pressure medium. A modified transducer/sample assembly and the installation of a new mechanical system allowed simultaneous measurements of P- and S-wave velocities in 132 independent directions of the sphere on a net in steps of 15°. Proper signals for P- and S-waves could be recorded by coating the sample surface with a high-viscosity shear wave gel and by temporal point contacting of the transmitter and receiver transducers with the sample surface during the measurements. The 3D seismic measurements revealed a strong foliation-related directional dependence (anisotropy) of P- and S-wave velocities, which is confirmed by measurements in a multi-anvil apparatus on a cube-shaped specimen of the same rock. Both experimental approaches show a marked pressure sensitivity of P- and S-wave velocities and velocity anisotropies. With increasing pressure, P- and S-wave velocities increase non-linearly due to progressive closure of micro-cracks. The reverse is true for velocity anisotropy. 3D velocity calculations based on neutron diffraction measurements of crystallographic preferred orientation (CPO) of major minerals show that the intrinsic bulk anisotropy is basically caused by the CPO of biotite constituting about 23 vol.% of the rock. Including the shape of biotite grains and oriented low-aspect ratio microcracks into the modelling increases bulk anisotropy. An important finding from this study is that the measurements on the sample sphere and on the sample cube displayed distinct differences, particularly in shear wave velocities. It is assumed that the differences are due to the different geometries of the samples and the configuration of the transducer-sample assembly

  7. C2SM: a mobile system for detecting and 3D mapping of chemical, radiological, and nuclear contamination

    NASA Astrophysics Data System (ADS)

    Jasiobedzki, Piotr; Ng, Ho-Kong; Bondy, Michel; McDiarmid, C. H.

    2009-05-01

    CBRN Crime Scene Modeler (C2SM) is a prototype mobile CBRN mapping system for First Responders in events where Chemical, Biological, Radiological and Nuclear agents where used. The prototype operates on board a small robotic platform, increases situational awareness of the robot operator by providing geo-located images and data, and current robot location. The sensor suite includes stereo and high resolution cameras, a long wave infra red (thermal) camera and gamma and chemical detectors. The system collects and sends geo-located data to a remote command post in near real-time and automatically creates 3D photorealistic model augmented with CBRN measurements. Two prototypes have been successfully tested in field trials and a fully ruggedised commercial version is expected in 2010.

  8. The Derivation of Fault Volumetric Properties from 3D Trace Maps Using Outcrop Constrained Discrete Fracture Network Models

    NASA Astrophysics Data System (ADS)

    Hodgetts, David; Seers, Thomas

    2015-04-01

    Fault systems are important structural elements within many petroleum reservoirs, acting as potential conduits, baffles or barriers to hydrocarbon migration. Large, seismic-scale faults often serve as reservoir bounding seals, forming structural traps which have proved to be prolific plays in many petroleum provinces. Though inconspicuous within most seismic datasets, smaller subsidiary faults, commonly within the damage zones of parent structures, may also play an important role. These smaller faults typically form narrow, tabular low permeability zones which serve to compartmentalize the reservoir, negatively impacting upon hydrocarbon recovery. Though considerable improvements have been made in the visualization field to reservoir-scale fault systems with the advent of 3D seismic surveys, the occlusion of smaller scale faults in such datasets is a source of significant uncertainty during prospect evaluation. The limited capacity of conventional subsurface datasets to probe the spatial distribution of these smaller scale faults has given rise to a large number of outcrop based studies, allowing their intensity, connectivity and size distributions to be explored in detail. Whilst these studies have yielded an improved theoretical understanding of the style and distribution of sub-seismic scale faults, the ability to transform observations from outcrop to quantities that are relatable to reservoir volumes remains elusive. These issues arise from the fact that outcrops essentially offer a pseudo-3D window into the rock volume, making the extrapolation of surficial fault properties such as areal density (fracture length per unit area: P21), to equivalent volumetric measures (i.e. fracture area per unit volume: P32) applicable to fracture modelling extremely challenging. Here, we demonstrate an approach which harnesses advances in the extraction of 3D trace maps from surface reconstructions using calibrated image sequences, in combination with a novel semi

  9. 3D geological modelling and geothermal mapping - the first results of the transboundary Polish - Saxon project "TransGeoTherm"

    NASA Astrophysics Data System (ADS)

    Kozdrój, Wiesław; Kłonowski, Maciej; Mydłowski, Adam; Ziółkowska-Kozdrój, Małgorzata; Badura, Janusz; Przybylski, Bogusław; Russ, Dorota; Zawistowski, Karol; Domańska, Urszula; Karamański, Paweł; Krentz, Ottomar; Hofmann, Karina; Riedel, Peter; Reinhardt, Silke; Bretschneider, Mario

    2014-05-01

    TransGeoTherm is a common project of the Polish Geological Institute - National Research Institute Lower Silesian Branch (Lead Partner) and the Saxon State Agency for Environment, Agriculture and Geology, co-financed by the European Union (EU) under the framework of the Operational Programme for Transboundary Co-operation Poland-Saxony 2007-2013. It started in October 2012 and will last until June 2014. The main goal of the project is to introduce and establish the use of low temperature geothermal energy as a low emission energy source in the Saxon-Polish transboundary project area. The numerous geological, hydrogeological and geothermal data have been gathered, analysed, combined and interpreted with respect to 3D numerical modelling and subsequently processed with use of the GOCAD software. The resulting geological model covers the transboundary project area exceeding 1.000 km2 and comprises around 70 units up to the depth of about 200 metres (locally deeper) below the terrain. The division of the above units has been based on their litho-stratigraphy as well as geological, hydrogeological and geothermal settings. The model includes two lignite deposits: Berzdorf deposit in Saxony-mined out and already recultivated and Radomierzyce deposit in Poland - documented but still not excavated. At the end of the modelling procedure the raster data sets of the top, bottom and thickness of every unit will be deduced from the 3D geological model with a gridsize of 25 by 25 metres. Based on the geothermal properties of the rocks and their groundwater content a specific value of geothermal conductivity will be allocated to each layer of every borehole. Thereafter for every section of a borehole, belonging to a certain unit of the 3D geological model, a weighted mean value will be calculated. Next the horizontal distribution of these values within every unit will be interpolated. This step / procedure has to be done for all units. As a result of further calculations a series

  10. Temperature surface measurements with a 3D velocity fluid flow measurement system using the same laser source and a single instrument

    NASA Astrophysics Data System (ADS)

    Rodriguez-Cervantes, Victor; Guerrero-Viramontes, J. Ascencion; Funes-Gallanzi, Marcelo

    2005-02-01

    The combination of flow velocimetry techniques and Temperature Sensitive Paints, (TSP), requires working with different laser beam intensities. Because velocity flow measurements (i.e. Particle Image Velocimetry, PIV) needs high level laser power compared with temperature surface measurement, where lower levels of laser power is required, is necessary to adjust the system to avoid the damage of the paint due to the high intensities in laser velocimetry measurements. The use of a paint of different grey levels, from white to black, as backgrounds above the TSP film deposition allows to make both, velocity and temperature measurements with the same laser power without damaging the TSP. This work is centered in the characterization, testing and calibration improvements of the temperature surface measurements using Temperature Sensitive Paints as a part of the 3D tunneling velocimetry system.

  11. Development of Inundation Map for Bantayan Island, Cebu Using Delft3D-Flow Storm Surge Simulations of Typhoon Haiyan

    NASA Astrophysics Data System (ADS)

    Cuadra, Camille; Suarez, John Kenneth; Biton, Nophi Ian; Cabacaba, Krichi May; Lapidez, John Phillip; Santiago, Joy; Mahar Francisco Lagmay, Alfredo; Malano, Vicente

    2014-05-01

    On average, 20 typhoons enter the Philippine area of responsibility annually, making it vulnerable to different storm hazards. Apart from the frequency of tropical cyclones, the archipelagic nature of the country makes it particularly prone to storm surges. On 08 November 2013, Haiyan, a Category 5 Typhoon with maximum one-minute sustained wind speed of 315 kph, hit the central region of the Philippines. In its path, the howler devastated Bantayan Island, a popular tourist destination. The island is located north of Cebu City, the second largest metropolis of the Philippines in terms of populace. Having been directly hit by Typhoon Haiyan, Bantayan Island was severely damaged by strong winds and storm surges, with more than 11,000 houses totally destroyed while 5,000 more suffered minor damage. The adverse impacts of possible future storm surge events in the island can only be mitigated if hazard maps that depict inundation of the coastal areas of Bantayan are generated. To create such maps, Delft3D-Flow, a hydrodynamic model was used to simulate storm surges. These simulations were made over a 10-m per pixel resolution Digital Elevation Model (DEM) and the General Bathymetric Chart of the Oceans (GEBCO) bathymetry. The results of the coastal inundation model for Typhoon Haiyan's storm surges were validated using data collected from field work and local government reports. The hydrodynamic model of Bantayan was then calibrated using the field data and further simulations were made with varying typhoon tracks. This was done to generate scenarios on the farthest possible inland incursion of storm surges. The output of the study is a detailed storm surge inundation map that depicts safe zones for development of infrastructure near coastal areas and for construction of coastal protection structures. The storm surge inundation map can also be used as basis for disaster preparedness plans of coastal communities threatened by approaching typhoons.

  12. Broad-band Rayleigh wave phase velocity maps (10-150 s) across the United States from ambient noise data

    NASA Astrophysics Data System (ADS)

    Zhao, Kaifeng; Luo, Yinhe; Xie, Jun

    2017-02-01

    In this study, we demonstrate the feasibility of imaging broad-band (10-150 s) Rayleigh wave phase velocity maps on a continental scale using ambient noise tomography (ANT). We obtain broad-band Rayleigh waves from cross-correlations of ambient noise data between all station pairs of USArray and measure the dispersion curves from these cross-correlations at a period band of 10-150 s. The large-scale dense USArray enables us to obtain over 500 000 surface wave paths which cover the contiguous United States densely. Using these paths, we generate Rayleigh wave phase velocity maps at 10-150 s periods. Our phase velocity maps are similar to other reported phase velocity maps based on ambient noise data at short periods (<50 s) and based on earthquake data at intermediate/long periods (50-90 s). This study extends ANT from short/intermediate periods (<50 s) to long periods up to 150 s in a continental scale of the USA. These broad-band phase velocity maps from ANT can be used to construct 3-D lithospheric and asthenospheric velocity structures.

  13. Preliminary result of teleseismic double-difference relocation of earthquakes in the Molucca collision zone with a 3D velocity model

    SciTech Connect

    Shiddiqi, Hasbi Ash E-mail: h.a.shiddiqi@gmail.com; Widiyantoro, Sri; Nugraha, Andri Dian; Ramdhan, Mohamad; Wandono,; Sutiyono,; Handayani, Titi; Nugroho, Hendro

    2015-04-24

    We have relocated hypocenters of earthquakes occurring in the Molucca collision zone and surrounding region taken from the BMKG catalog using teleseismic double-difference relocation algorithm (teletomoDD). We used P-wave arrival times of local, regional, and teleseismic events recorded at 304 recording stations. Over 7,000 earthquakes were recorded by the BMKG seismographicnetworkin the study region from April, 2009 toJune, 2014. We used a 3D regional-global nested velocity modelresulting fromprevious global tomographystudy. In this study, the3D seismic velocity model was appliedto theIndonesian region, whilethe1D seismicvelocity model (ak135)wasused for regions outside of Indonesia. Our relocation results show a better improvement in travel-time RMS residuals comparedto those of the BMKG catalog.Ourresultsalso show that relocation shifts were dominated intheeast-west direction, whichmaybeinfluenced by theexistingvelocity anomaly related to the reversed V-shaped slabbeneaththestudy region. Our eventrelocation results refine the geometry of slabs beneath the Halmahera and Sangihe arcs.

  14. Preliminary result of teleseismic double-difference relocation of earthquakes in the Molucca collision zone with a 3D velocity model

    NASA Astrophysics Data System (ADS)

    Shiddiqi, Hasbi Ash; Widiyantoro, Sri; Nugraha, Andri Dian; Ramdhan, Mohamad; Wandono, Sutiyono, Handayani, Titi; Nugroho, Hendro

    2015-04-01

    We have relocated hypocenters of earthquakes occurring in the Molucca collision zone and surrounding region taken from the BMKG catalog using teleseismic double-difference relocation algorithm (teletomoDD). We used P-wave arrival times of local, regional, and teleseismic events recorded at 304 recording stations. Over 7,000 earthquakes were recorded by the BMKG seismographicnetworkin the study region from April, 2009 toJune, 2014. We used a 3D regional-global nested velocity modelresulting fromprevious global tomographystudy. In this study, the3D seismic velocity model was appliedto theIndonesian region, whilethe1D seismicvelocity model (ak135)wasused for regions outside of Indonesia. Our relocation results show a better improvement in travel-time RMS residuals comparedto those of the BMKG catalog.Ourresultsalso show that relocation shifts were dominated intheeast-west direction, whichmaybeinfluenced by theexistingvelocity anomaly related to the reversed V-shaped slabbeneaththestudy region. Our eventrelocation results refine the geometry of slabs beneath the Halmahera and Sangihe arcs.

  15. Documentation and Visualization of AN As-Built Tunnel by Combining 3d Laser Scanning and Web Mapping

    NASA Astrophysics Data System (ADS)

    Zhang, C.; Arditi, D.; Chen, Z.

    2013-08-01

    A new way to document and visualize the as-built condition of an urban tunnel project with high accuracy is described in this paper, based on recent developments of laser scanning technology. In traditional surveying, the components of a tunnel are organized on the basis of the location of stations and offsets along the project alignment specified in the drawings. It is difficult for people without an engineering background to understand the information involved in surveying reports, drawings, and engineering data. However, in the interest of transparency, public agencies that commission construction projects have to make project information available to government officials and to the general public. This paper discusses the combined use of laser scanning technology and web mapping services to improve the documentation and visualization of an urban metro tunnel. Laser scanning technology is introduced to perform the surveyor's task, document the as-built condition, and geo-reference the construction elements. A set of panoramic pictures is generated by laser scanning that allows for taking measurements and extracting 3D coordinates. An XML file that contains geo-reference information is appended to each panoramic picture. Using application programming interface (API), this information is referenced to a web mapping service. A case study of the CTA Red line Tunnel in Chicago, IL demonstrates this method in a real life project.

  16. Reconstructing 3-D maps of the local viscoelastic properties using a finite-amplitude modulated radiation force.

    PubMed

    Giannoula, Alexia; Cobbold, Richard; Bezerianos, Anastasios

    2014-02-01

    A modulated acoustic radiation force, produced by two confocal tone-burst ultrasound beams of slightly different frequencies (i.e. 2.0 MHz ± Δf/2, where Δf is the difference frequency), can be used to remotely generate modulated low-frequency (Δf ≤ 500 Hz) shear waves in attenuating media. By appropriately selecting the duration of the two beams, the energy of the generated shear waves can be concentrated around the difference frequency (i.e., Δf ± Δf/2). In this manner, neither their amplitude nor their phase information is distorted by frequency-dependent effects, thereby, enabling a more accurate reconstruction of the viscoelastic properties. Assuming a Voigt viscoelastic model, this paper describes the use of a finite-element-method model to simulate three-dimensional (3-D) shear-wave propagation in viscoelastic media containing a spherical inclusion. Nonlinear propagation is assumed for the two ultrasound beams, so that higher harmonics are developed in the force and shear spectrum. Finally, an inverse reconstruction algorithm is used to extract 3-D maps of the local shear modulus and viscosity from the simulated shear-displacement fields based on the fundamental and second-harmonic component. The quality of the reconstructed maps is evaluated using the contrast between the inclusion and the background and the contrast-to-noise ratio (CNR). It is shown that the shear modulus can be accurately reconstructed based on the fundamental component, such that the observed contrast deviates from the true contrast by a root-mean-square-error (RMSE) of only 0.38 and the CNR is greater than 30 dB. If the second-harmonic component is used, the RMSE becomes 1.54 and the corresponding CNR decreases by approximately 10-15 dB. The reconstructed shear viscosity maps based on the second harmonic are shown to be of higher quality than those based on the fundamental. The effects of noise are also investigated and a fusion operation between the two spectral components is

  17. Validation of a CFD Model by Using 3D Sonic Anemometers to Analyse the Air Velocity Generated by an Air-Assisted Sprayer Equipped with Two Axial Fans

    PubMed Central

    García-Ramos, F. Javier; Malón, Hugo; Aguirre, A. Javier; Boné, Antonio; Puyuelo, Javier; Vidal, Mariano

    2015-01-01

    A computational fluid dynamics (CFD) model of the air flow generated by an air-assisted sprayer equipped with two axial fans was developed and validated by practical experiments in the laboratory. The CFD model was developed by considering the total air flow supplied by the sprayer fan to be the main parameter, rather than the outlet air velocity. The model was developed for three air flows corresponding to three fan blade settings and assuming that the sprayer is stationary. Actual measurements of the air velocity near the sprayer were taken using 3D sonic anemometers. The workspace sprayer was divided into three sections, and the air velocity was measured in each section on both sides of the machine at a horizontal distance of 1.5, 2.5, and 3.5 m from the machine, and at heights of 1, 2, 3, and 4 m above the ground The coefficient of determination (R2) between the simulated and measured values was 0.859, which demonstrates a good correlation between the simulated and measured data. Considering the overall data, the air velocity values produced by the CFD model were not significantly different from the measured values. PMID:25621611

  18. Characterizing spatial variability in velocity and turbulence intensity using 3-D acoustic Doppler velocimeter data in a plane-bed reach of East St. Louis Creek, Colorado, USA

    NASA Astrophysics Data System (ADS)

    David, Gabrielle C. L.; Legleiter, Carl J.; Wohl, Ellen; Yochum, Steven E.

    2013-02-01

    We investigated the influence on flow resistance of flow structure and turbulence at the reach scale in a mountain channel using 3-D velocity measurements and geostatistical analysis to understand the complexity of the flow structure in a reach with limited bed irregularities. The increase in flow resistance at low flows in a plane-bed reach was not fully explained by grain resistance, therefore detailed 3-D velocity measurements were made to investigate spatial variability in velocity and turbulence components and potential controls on flow resistance. One plane-bed reach was surveyed over two stages in Fraser Experimental Forest, Colorado, using a combination of a total station, LiDAR (Light Detection and Ranging), and a SonTek Flowtracker handheld ADV (acoustic Doppler velocimeter). LiDAR was used to capture bank and channel geometry at low flows, whereas the water surface and bed data were collected with the total station at all flows. We used the standard deviation of bed elevation (σb) within a moving window as an index of roughness height (ks) and calculated the relative submergence of the bed at different stages as h/ks, where h is the local flow depth. ADV measurements were collected on a grid with a 0.3 m to 0.5 m spacing. Geostatistical analysis of the velocity data indicated that the flow was highly three-dimensional and varied based on stage, demonstrating that even small irregularities in the bed have a significant influence on the flow characteristics. The streamwise component was the largest at both low and high flow, but varied more throughout the reach at low flow. At high flow, the greatest streamwise velocities were located within the thalweg. Areas of upwelling and downwelling also varied based on stage, with this component being strongly influenced by small changes in the morphology at high flow, and by protuberant grains at low flows. The cross-stream velocity and turbulence components were controlled by the flow structure and less by the

  19. Calculation of three-dimensional (3-D) internal flow by means of the velocity-vorticity formulation on a staggered grid

    NASA Technical Reports Server (NTRS)

    Stremel, Paul M.

    1995-01-01

    A method has been developed to accurately compute the viscous flow in three-dimensional (3-D) enclosures. This method is the 3-D extension of a two-dimensional (2-D) method developed for the calculation of flow over airfoils. The 2-D method has been tested extensively and has been shown to accurately reproduce experimental results. As in the 2-D method, the 3-D method provides for the non-iterative solution of the incompressible Navier-Stokes equations by means of a fully coupled implicit technique. The solution is calculated on a body fitted computational mesh incorporating a staggered grid methodology. In the staggered grid method, the three components of vorticity are defined at the centers of the computational cell sides, while the velocity components are defined as normal vectors at the centers of the computational cell faces. The staggered grid orientation provides for the accurate definition of the vorticity components at the vorticity locations, the divergence of vorticity at the mesh cell nodes and the conservation of mass at the mesh cell centers. The solution is obtained by utilizing a fractional step solution technique in the three coordinate directions. The boundary conditions for the vorticity and velocity are calculated implicitly as part of the solution. The method provides for the non-iterative solution of the flow field and satisfies the conservation of mass and divergence of vorticity to machine zero at each time step. To test the method, the calculation of simple driven cavity flows have been computed. The driven cavity flow is defined as the flow in an enclosure driven by a moving upper plate at the top of the enclosure. To demonstrate the ability of the method to predict the flow in arbitrary cavities, results will he shown for both cubic and curved cavities.

  20. 3D CFD modeling of flowing-gas DPALs with different pumping geometries and various flow velocities

    NASA Astrophysics Data System (ADS)

    Yacoby, Eyal; Waichman, Karol; Sadot, Oren; Barmashenko, Boris D.; Rosenwaks, Salman

    2017-01-01

    Scaling-up flowing-gas diode pumped alkali lasers (DPALs) to megawatt class power is studied using accurate three-dimensional computational fluid dynamics model, taking into account the effects of temperature rise and losses of alkali atoms due to ionization. Both the maximum achievable power and laser beam quality are estimated for Cs and K lasers. We examined the influence of the flow velocity and Mach number M on the maximum achievable power of subsonic and supersonic lasers. For Cs DPAL devices with M = 0.2 - 3 the output power increases with increasing M by only 20%, implying that supersonic operation mode has only small advantage over subsonic. In contrast, the power achievable in K DPALs strongly depends on M. The output power increases by 100% when M increases from 0.2 to 4, showing a considerable advantage of supersonic device over subsonic. The reason for the increase of the power with M in both Cs and K DPALs is the decrease of the temperature due to the gas expansion in the flow system. However, the power increase for K lasers is much larger than for the Cs devices mainly due to the much smaller fine-structure splitting of the 2P states ( 58 cm-1 for K and 554 cm-1 for Cs), which results in a much stronger effect of the temperature decrease in K DPALs. For pumping by beams of the same rectangular cross section, comparison between end-pumping and transverse-pumping shows that the output power is not affected by the pump geometry. However, the intensity of the output laser beam in the case of transverse-pumped DPALs is strongly non-uniform in the laser beam cross section resulting in higher brightness and better beam quality in the far field for the end-pumping geometry where the intensity of the output beam is uniform.

  1. Mapping conduction velocity of early embryonic hearts with a robust fitting algorithm

    PubMed Central

    Gu, Shi; Wang, Yves T; Ma, Pei; Werdich, Andreas A; Rollins, Andrew M; Jenkins, Michael W

    2015-01-01

    Cardiac conduction maturation is an important and integral component of heart development. Optical mapping with voltage-sensitive dyes allows sensitive measurements of electrophysiological signals over the entire heart. However, accurate measurements of conduction velocity during early cardiac development is typically hindered by low signal-to-noise ratio (SNR) measurements of action potentials. Here, we present a novel image processing approach based on least squares optimizations, which enables high-resolution, low-noise conduction velocity mapping of smaller tubular hearts. First, the action potential trace measured at each pixel is fit to a curve consisting of two cumulative normal distribution functions. Then, the activation time at each pixel is determined based on the fit, and the spatial gradient of activation time is determined with a two-dimensional (2D) linear fit over a square-shaped window. The size of the window is adaptively enlarged until the gradients can be determined within a preset precision. Finally, the conduction velocity is calculated based on the activation time gradient, and further corrected for three-dimensional (3D) geometry that can be obtained by optical coherence tomography (OCT). We validated the approach using published activation potential traces based on computer simulations. We further validated the method by adding artificially generated noise to the signal to simulate various SNR conditions using a curved simulated image (digital phantom) that resembles a tubular heart. This method proved to be robust, even at very low SNR conditions (SNR = 2-5). We also established an empirical equation to estimate the maximum conduction velocity that can be accurately measured under different conditions (e.g. sampling rate, SNR, and pixel size). Finally, we demonstrated high-resolution conduction velocity maps of the quail embryonic heart at a looping stage of development. PMID:26114034

  2. 3-D GPS velocity field and its implications on the present-day post-orogenic deformation of the Western Alps and Pyrenees

    NASA Astrophysics Data System (ADS)

    Ninh Nguyen, Hai; Vernant, Philippe; Mazzotti, Stephane; Khazaradze, Giorgi; Asensio, Eva

    2016-09-01

    We present a new 3-D GPS velocity solution for 182 sites for the region encompassing the Western Alps, Pyrenees, and southern France. The velocity field is based on a Precise Point Positioning (PPP) solution, to which we apply a common-mode filter, defined by the 26 longest time series, in order to correct for network-wide biases (reference frame, unmodeled large-scale processes, etc.). We show that processing parameters, such as troposphere delay modeling, can lead to systematic velocity variations of 0.1-0.5 mm yr-1 affecting both accuracy and precision, especially for short (< 5 years) time series. A velocity convergence analysis shows that minimum time-series lengths of ˜ 3 and ˜ 5.5 years are required to reach a velocity stability of 0.5 mm yr-1 in the horizontal and vertical components, respectively. On average, horizontal residual velocities show a stability of ˜ 0.2 mm yr-1 in the Western Alps, Pyrenees, and southern France. The only significant horizontal strain rate signal is in the western Pyrenees with up to 4 × 10-9 yr-1 NNE-SSW extension, whereas no significant strain rates are detected in the Western Alps (< 1 × 10-9 yr-1). In contrast, we identify significant uplift rates up to 2 mm yr-1 in the Western Alps but not in the Pyrenees (0.1 ± 0.2 mm yr-1). A correlation between site elevations and fast uplift rates in the northern part of the Western Alps, in the region of the Würmian ice cap, suggests that part of this uplift is induced by postglacial rebound. The very slow uplift rates in the southern Western Alps and in the Pyrenees could be accounted for by erosion-induced rebound.

  3. Field Trial Results of a 14-channel GPR Integrated with a U.S. Program for 3-D Utility Mapping

    NASA Astrophysics Data System (ADS)

    Anspach, James H.

    2013-04-01

    utilities were mostly undetectable. Through a ground-truthing program of test holes to expose utilities, the depth values derived from the enhanced GPR were fairly consistent and within 15 cm of actual depth. The incomplete underground picture determined by the enhanced GPR reinforces previous studies that show that the mapping of existing underground utilities is a multi-tool effort that takes highly trained and skilled field technicians and data interpreters. The addition of a new GPR tool is valuable in determining continuous depth profiles of imaged utilities. A second and significant benefit is the interpretation of other geotechnical data that benefit project designers. This might include showing geometry, location, intensity, and depths of either areas of anomalies, or of known structures, such as paving thickness, substrate thickness, voids, water table, soil lenses, boulders, bedrock, and so forth. The Florida Department of Transportation has decided to take advantage of this new technology and has entered into an experimental contract with Cardno TBE to incorporate several enhanced GPR arrays with traditional utility detection tools. The goal of this contract will be to provide a 3-D model of existing underground utilities for use in automated construction. The GPR 3-D data model will be melded with conventional subsurface utility engineering and mapping practices and will be required to follow the ASCE 38 standard for utility data reliability.

  4. Title of abstract - Different approaches to the determining of 3-d P and S wave velocity structures of the crust beneath Northern Tien Shan

    NASA Astrophysics Data System (ADS)

    Kryukova, O.

    2003-04-01

    The seismic images of the crust beneath Northern Tien Shan (NTS) are obtained with using of different sets of data and several algorithms for solution of local earthquake tomography problem. The NTS is a very interesting region from geophysical point if view due to high seismic activity caused by interplate collision: Tien Shan and Kazakh. A rectangular region under investigation is constrained by lines 41.90o N - 43.40o N and 73.50o E- 76.50o E. 14661 P and 14436 S wave arrival times recorded 12 seismic stations of the Kyrgyzstan Broadband Network (KNET) from local earthquake in 1991-1999 years are used. In addition, data from 267 local earthquake recorded over a period of about 20 years by a regional arrays of 93 seismographs in NTS are involved in inversions. 1-d optimal velocity models and stations delays are estimated with help of program VELEST (E.Kissling, 1995). Block parameterization of model and ray tracing described by Thurber and Ellsworth (1980) are used for determination of 3-d velocity structure and relocation of events as one of the approaches (programs S.Roecker Sphypit90 and Sphrel3d). Other approach consists in application linear or cubic B spline interpolation of velocity function and ray tracing Um and Thurber (1987) for the solution of forward problem (program C.Thurber et al. Simulps and own program). The data resolution analysis and statistical analysis of models was carried out. Calculated P wave tomographic models were compared with tomographic models S.Roecker et al. (1993), S.Ghose et al. (1998) and T.Sabitova (1996). The main result is the confirmation of existence of different seismic velocity structure beneath Kyrgyz Range and Chu Basin. Using various sets of date and methods for reconstruction velocity model is effective in reveal of more reliable velocity heterogeneities in the domain of research. The author is grateful to dr. I. Kitov for help and to dr. I.Sanina for useful discussion.

  5. Dynamic deformation measurements of a rotating disc by twin-pulsed 3D digital holography and interpolation of phase maps

    NASA Astrophysics Data System (ADS)

    Perez-Lopez, Carlos; Mendoza Santoyo, Fernando

    2004-06-01

    This paper describes the application of twin-pulsed 3D digital holography to the measurement of the dynamic deformation of a disc while it rotates. Object rotation produces interferometric fringes that are related to deformations for instance, stress due to the centrifugal forces, out-to plane vibrations, and the object angular displacement. Furthermore an unbalanced disc that rotates may present a characteristic vibration amplitude pattern at a specific frequency. An optical arrangement that illuminates, with a twin pulsed laser, from three different positions the object was used to recover the x, y and z displacement components in a rotating object. The technique is able to distinguish the disc rotation from the displacement along the x-y plane and the out-of-plane z displacement. Two laser pulses are fired in order to take two digital holgrams with a time separation of 20 μs. This is done for each of the three object illumination positions. Triads of twin-pulsed digital holograms taken at different times during object rotation are processed independently, and their optical phase maps retrieved by the conventional Fourier transform method together with the combination of data from the three illumination positions. The phase term related to the deformation is found experimentally where the intrinsic sensitivity vector is related to the rotation via the vector cross product, forming parallel fringes. To recover the rotation and deformation data the unwrapped phase maps were used as 'tilt' phase planes an all three sensitivity vectors in order to recover the in-plane, and out-to plane displacements. An interpolation algorithm was developed to correlate the time depending phase maps, leading to obtain object vibration frequency data. Experimental results are presented, showing in particular that the rotating object has an unbalancing due to the detected vibration frequency.

  6. High-resolution 3-D T1*-mapping and quantitative image analysis of GRAY ZONE in chronic fibrosis.

    PubMed

    Pop, Mihaela; Ramanan, Venkat; Yang, Franklin; Zhang, Li; Newbigging, Susan; Ghugre, Nilesh R; Wright, Graham A

    2014-12-01

    The substrate of potentially lethal cardiac arrhythmias often resides in the gray zone (GZ), a mixture of viable myocytes and collagen strands found between healthy myocardium and infarct core (IC). The specific aims of this paper are to demonstrate correspondence between regions delineated in T1* (apparent T1) maps and tissue characteristics seen in histopathology and to determine the MR imaging resolution needed to adequately identify GZ-associated substrate in chronic infarct. For this, a novel 3-D multicontrast late enhancement (MCLE) MR method was used to image ex vivo swine hearts with chronic infarction, at high resolution ( 0.6×0.6×1.25 mm). Pixel-wise classified tissue maps were calculated using steady-state and T1* images as input to a fuzzy-clustering algorithm. Quantitative histology based on collagen stains was performed in n = 10 selected slabs and showed very good correlations between histologically-determined areas of heterogeneous and dense fibrosis, and the corresponding GZ ( R2 = 0.96) and IC ( R2 = 0.97 ) in tissue classified maps. Furthermore, in n = 24 slabs, we performed volumetric measurements of GZ and IC, at the original and decreased image resolutions. Our results demonstrated that the IC volume remained relatively unchanged across all resolutions, whereas the GZ volume progressively increased with diminished image resolution, with changes reaching significance at 1×1×5 mm resolution (p < 0.05 ) but not at 1×1×2.5 mm, suggesting that this resolution may be sufficient to adequately identify the GZ from MCLE images, enabling an effective MR probing of remodeled myocardium in late infarct. Future work will focus on translating these findings to optimizing the current in vivo MCLE imaging of the GZ.

  7. A 3D map of the hindlimb motor representation in the lumbar spinal cord in Sprague Dawley rats

    NASA Astrophysics Data System (ADS)

    Borrell, Jordan A.; Frost, Shawn B.; Peterson, Jeremy; Nudo, Randolph J.

    2017-02-01

    Objective. Spinal cord injury (SCI) is a devastating neurological trauma with a prevalence of about 282 000 people living with an SCI in the United States in 2016. Advances in neuromodulatory devices hold promise for restoring function by incorporating the delivery of electrical current directly into the spinal cord grey matter via intraspinal microstimulation (ISMS). In such designs, detailed topographic maps of spinal cord outputs are needed to determine ISMS locations for eliciting hindlimb movements. The primary goal of the present study was to derive a topographic map of functional motor outputs in the lumbar spinal cord to hindlimb skeletal muscles as defined by ISMS in a rat model. Approach. Experiments were carried out in nine healthy, adult, male, Sprague Dawley rats. After a laminectomy of the T13-L1 vertebrae and removal of the dura mater, a four-shank, 16-channel microelectrode array was inserted along a 3D (200 µm) stimulation grid. Trains of three biphasic current pulses were used to determine evoked movements and electromyographic (EMG) activity. Via fine wire EMG electrodes, stimulus-triggered averaging (StTA) was used on rectified EMG data to determine response latency. Main results. Hindlimb movements were elicited at a median current intensity of 6 µA, and thresholds were significantly lower in ventrolateral sites. Movements typically consisted of whole leg, hip, knee, ankle, toe, and trunk movements. Hip movements dominated rostral to the T13 vertebral segment, knee movements were evoked at the T13-L1 vertebral junction, while ankle and digit movements were found near the rostral L1 vertebra. Whole leg movements spanned the entire rostrocaudal region explored, while trunk movements dominated medially. StTAs of EMG activity demonstrated a latency of ~4 ms. Significance. The derived motor map provides insight into the parameters needed for future neuromodulatory devices.

  8. 3D-QSAR AND CONTOUR MAP ANALYSIS OF TARIQUIDAR ANALOGUES AS MULTIDRUG RESISTANCE PROTEIN-1 (MRP1) INHIBITORS

    PubMed Central

    Kakarla, Prathusha; Inupakutika, Madhuri; Devireddy, Amith R.; Gunda, Shravan Kumar; Willmon, Thomas Mark; Ranjana, KC; Shrestha, Ugina; Ranaweera, Indrika; Hernandez, Alberto J.; Barr, Sharla; Varela, Manuel F.

    2016-01-01

    One of the major obstacles to the successful chemotherapy towards several cancers is multidrug resistance of human cancer cells to anti-cancer drugs. An important contributor to multidrug resistance is the human multidrug resistance protein-1 transporter (MRP1), which is an efflux pump of the ABC (ATP binding cassette) superfamily. Thus, highly efficacious, third generation MRP1 inhibitors, like tariquidar analogues, are promising inhibitors of multidrug resistance and are under clinical trials. To maximize the efficacy of MRP1 inhibitors and to reduce systemic toxicity, it is important to limit the exposure of MRP1 inhibitors and anticancer drugs to normal tissues and to increase their co-localization with tumor cells. Comparative Molecular Field Analysis (CoMFA) and Comparative Molecular Similarity Indices Analysis (CoMSIA) associated with 3D-Quantitiative structure-activity relationship (3D-QSAR) studies were performed on a series of tariquidar analogues, as selective MDR modulators. Best predictability was obtained with CoMFA model r2(non-cross-validated square of correlation coefficient) = 0.968, F value = 151.768 with five components, standard error of estimate = 0.107 while the CoMSIA yielded r2 = 0.982, F value = 60.628 with six components, and standard error of estimate = 0.154. These results indicate that steric, electrostatic, hydrophobic (lipophilic), and hydrogen bond donor substituents play significant roles in multidrug resistance modulation of tariquidar analogues upon MRP1. The tariquidar analogue and MRP1 binding and stability data generated from CoMFA and CoMSIA based 3D–contour maps may further aid in study and design of tariquidar analogues as novel, potent and selective MDR modulator drug candidates. PMID:26913287

  9. Screening Method for the Discovery of Potential Bioactive Cysteine-Containing Peptides Using 3D Mass Mapping

    NASA Astrophysics Data System (ADS)

    van Oosten, Luuk N.; Pieterse, Mervin; Pinkse, Martijn W. H.; Verhaert, Peter D. E. M.

    2015-12-01

    Animal venoms and toxins are a valuable source of bioactive peptides with pharmacologic relevance as potential drug leads. A large subset of biologically active peptides discovered up till now contain disulfide bridges that enhance stability and activity. To discover new members of this class of peptides, we developed a workflow screening specifically for those peptides that contain inter- and intra-molecular disulfide bonds by means of three-dimensional (3D) mass mapping. Two intrinsic properties of the sulfur atom, (1) its relatively large negative mass defect, and (2) its isotopic composition, allow for differentiation between cysteine-containing peptides and peptides lacking sulfur. High sulfur content in a peptide decreases the normalized nominal mass defect (NMD) and increases the normalized isotopic shift (NIS). Hence in a 3D plot of mass, NIS, and NMD, peptides with sulfur appear in this plot with a distinct spatial localization compared with peptides that lack sulfur. In this study we investigated the skin secretion of two frog species; Odorrana schmackeri and Bombina variegata. Peptides from the crude skin secretions were separated by nanoflow LC, and of all eluting peptides high resolution zoom scans were acquired in order to accurately determine both monoisotopic mass and average mass. Both the NMD and the NIS were calculated from the experimental data using an in-house developed MATLAB script. Candidate peptides exhibiting a low NMD and high NIS values were selected for targeted de novo sequencing, and this resulted in the identification of several novel inter- and intra-molecular disulfide bond containing peptides.

  10. Test of high-resolution 3D P-wave velocity model of Poland by back-azimuthal sections of teleseismic receiver function

    NASA Astrophysics Data System (ADS)

    Wilde-Piorko, Monika; Polkowski, Marcin; Grad, Marek

    2015-04-01

    Geological and seismic structure under area of Poland is well studied by over one hundred thousand boreholes, over thirty deep seismic refraction and wide angle reflection profiles and by vertical seismic profiling, magnetic, gravity, magnetotelluric and thermal methods. Compilation of these studies allowed to create a high-resolution 3D P-wave velocity model down to 60 km depth in the area of Poland (Polkowski et al. 2014). Model also provides details about the geometry of main layers of sediments (Tertiary and Quaternary, Cretaceous, Jurassic, Triassic, Permian, old Paleozoic), consolidated/crystalline crust (upper, middle and lower) and uppermost mantle. This model gives an unique opportunity for calculation synthetic receiver function and compering it with observed receiver function calculated for permanent and temporary seismic stations. Modified ray-tracing method (Langston, 1977) can be used directly to calculate the response of the structure with dipping interfaces to the incoming plane wave with fixed slowness and back-azimuth. So, 3D P-wave velocity model has been interpolated to 2.5D P-wave velocity model beneath each seismic station and back-azimuthal sections of components of receiver function have been calculated. Vp/Vs ratio is assumed to be 1.8, 1.67, 1.73, 1.77 and 1.8 in the sediments, upper/middle/lower consolidated/crystalline crust and uppermost mantle, respectively. Densities were calculated with combined formulas of Berteussen (1977) and Gardner et al. (1974). Additionally, to test a visibility of the lithosphere-asthenosphere boundary phases at receiver function sections models have been extended to 250 km depth based on P4-mantle model (Wilde-Piórko et al., 2010). National Science Centre Poland provided financial support for this work by NCN grant DEC-2011/02/A/ST10/00284 and by NCN grant UMO-2011/01/B/ST10/06653.

  11. Development of a 3D Underground Cadastral System with Indoor Mapping for As-Built BIM: The Case Study of Gangnam Subway Station in Korea

    PubMed Central

    Kim, Sangmin; Kim, Jeonghyun; Jung, Jaehoon; Heo, Joon

    2015-01-01

    The cadastral system provides land ownership information by registering and representing land boundaries on a map. The current cadastral system in Korea, however, focuses mainly on the management of 2D land-surface boundaries. It is not yet possible to provide efficient or reliable land administration, as this 2D system cannot support or manage land information on 3D properties (including architectures and civil infrastructures) for both above-ground and underground facilities. A geometrical model of the 3D parcel, therefore, is required for registration of 3D properties. This paper, considering the role of the cadastral system, proposes a framework for a 3D underground cadastral system that can register various types of 3D underground properties using indoor mapping for as-built Building Information Modeling (BIM). The implementation consists of four phases: (1) geometric modeling of a real underground infrastructure using terrestrial laser scanning data; (2) implementation of as-built BIM based on geometric modeling results; (3) accuracy assessment for created as-built BIM using reference points acquired by total station; and (4) creation of three types of 3D underground cadastral map to represent underground properties. The experimental results, based on indoor mapping for as-built BIM, show that the proposed framework for a 3D underground cadastral system is able to register the rights, responsibilities, and restrictions corresponding to the 3D underground properties. In this way, clearly identifying the underground physical situation enables more reliable and effective decision-making in all aspects of the national land administration system. PMID:26690174

  12. Development of a 3D Underground Cadastral System with Indoor Mapping for As-Built BIM: The Case Study of Gangnam Subway Station in Korea.

    PubMed

    Kim, Sangmin; Kim, Jeonghyun; Jung, Jaehoon; Heo, Joon

    2015-12-09

    The cadastral system provides land ownership information by registering and representing land boundaries on a map. The current cadastral system in Korea, however, focuses mainly on the management of 2D land-surface boundaries. It is not yet possible to provide efficient or reliable land administration, as this 2D system cannot support or manage land information on 3D properties (including architectures and civil infrastructures) for both above-ground and underground facilities. A geometrical model of the 3D parcel, therefore, is required for registration of 3D properties. This paper, considering the role of the cadastral system, proposes a framework for a 3D underground cadastral system that can register various types of 3D underground properties using indoor mapping for as-built Building Information Modeling (BIM). The implementation consists of four phases: (1) geometric modeling of a real underground infrastructure using terrestrial laser scanning data; (2) implementation of as-built BIM based on geometric modeling results; (3) accuracy assessment for created as-built BIM using reference points acquired by total station; and (4) creation of three types of 3D underground cadastral map to represent underground properties. The experimental results, based on indoor mapping for as-built BIM, show that the proposed framework for a 3D underground cadastral system is able to register the rights, responsibilities, and restrictions corresponding to the 3D underground properties. In this way, clearly identifying the underground physical situation enables more reliable and effective decision-making in all aspects of the national land administration system.

  13. Dynamics of pickup ion velocity distribution function in Titan's plasma environment (TA encounter): 3D hybrid kinetic modeling and comparison with CAPS observations

    NASA Astrophysics Data System (ADS)

    Simpson, D. G.; Lipatov, A. S.; Sittler, E. C.; Hartle, R. E.; Cooper, J. F.

    2013-12-01

    Wave-particle interactions play a very important role in the plasma dynamics near Titan: mass loading, excitation of the low-frequency waves and the formation of the particle velocity distribution function, e.g. ring/shell-like distributions, etc. The kinetic approach is important for estimation of the collision processes e.g. a charge exchange. The particle velocity distribution function also plays a key role for understanding the observed particle fluxes. In this report we discuss the ion velocity distribution function dynamics from 3D hybrid modeling. The modeling is based on recent analysis of the Cassini Plasma Spectrometer (CAPS) ion measurements during the TA flyby. In our model the background ions, all pickup ions, and ionospheric ions are considered as particles, whereas the electrons are described as a fluid. Inhomogeneous photoionization, electron-impact ionization and charge exchange are included in our model. The temperatures of the background electrons and pickup electrons were also included into the generalized Ohm's law. We also take into account the collisions between the ions and neutrals. We use Chamberlain profiles for the exosphere's components and include a simple ionosphere model with M=28 ions that were generated inside the ionosphere. The moon is considered as a weakly conducting body. Our modeling shows that interaction between background plasma and pickup ions H+, H2+, CH4+ and N2+ has a more complicated structure than was observed in the T9 flyby and modeling due to the large gyroradius of the background O+ ions [1,2,3,4]. Special attention will be paid to comparing the simulated pickup ion velocity distribution with CAPS TA observations. We also compare our kinetic modeling with other hybrid and MHD modeling of Titan's environment. References [1] Sittler, E.C., et al., Energy Deposition Processes in Titan's Upper Atmosphere and Its Induced Magnetosphere. In: Titan from Cassini-Huygens, Brown, R.H., Lebreton J.P., Waite, J.H., Eds

  14. Application of the H/V and SPAC Method to Estimate a 3D Shear Wave Velocity Model, in the City of Coatzacoalcos, Veracruz.

    NASA Astrophysics Data System (ADS)

    Morales, L. E. A. P.; Aguirre, J.; Vazquez Rosas, R.; Suarez, G.; Contreras Ruiz-Esparza, M. G.; Farraz, I.

    2014-12-01

    Methods that use seismic noise or microtremors have become very useful tools worldwide due to its low costs, the relative simplicity in collecting data, the fact that these are non-invasive methods hence there is no need to alter or even perforate the study site, and also these methods require a relatively simple analysis procedure. Nevertheless the geological structures estimated by this methods are assumed to be parallel, isotropic and homogeneous layers. Consequently precision of the estimated structure is lower than that from conventional seismic methods. In the light of these facts this study aimed towards searching a new way to interpret the results obtained from seismic noise methods. In this study, seven triangular SPAC (Aki, 1957) arrays were performed in the city of Coatzacoalcos, Veracruz, varying in sizes from 10 to 100 meters. From the autocorrelation between the stations of each array, a Rayleigh wave phase velocity dispersion curve was calculated. Such dispersion curve was used to obtain a S wave parallel layers velocity (VS) structure for the study site. Subsequently the horizontal to vertical ratio of the spectrum of microtremors H/V (Nogoshi and Igarashi, 1971; Nakamura, 1989, 2000) was calculated for each vertex of the SPAC triangular arrays, and from the H/V spectrum the fundamental frequency was estimated for each vertex. By using the H/V spectral ratio curves interpreted as a proxy to the Rayleigh wave ellipticity curve, a series of VS structures were inverted for each vertex of the SPAC array. Lastly each VS structure was employed to calculate a 3D velocity model, in which the exploration depth was approximately 100 meters, and had a velocity range in between 206 (m/s) to 920 (m/s). The 3D model revealed a thinning of the low velocity layers. This proved to be in good agreement with the variation of the fundamental frequencies observed at each vertex. With the previous kind of analysis a preliminary model can be obtained as a first

  15. Identification of source velocities on 3D structures in non-anechoic environments: Theoretical background and experimental validation of the inverse patch transfer functions method

    NASA Astrophysics Data System (ADS)

    Aucejo, M.; Totaro, N.; Guyader, J.-L.

    2010-08-01

    In noise control, identification of the source velocity field remains a major problem open to investigation. Consequently, methods such as nearfield acoustical holography (NAH), principal source projection, the inverse frequency response function and hybrid NAH have been developed. However, these methods require free field conditions that are often difficult to achieve in practice. This article presents an alternative method known as inverse patch transfer functions, designed to identify source velocities and developed in the framework of the European SILENCE project. This method is based on the definition of a virtual cavity, the double measurement of the pressure and particle velocity fields on the aperture surfaces of this volume, divided into elementary areas called patches and the inversion of impedances matrices, numerically computed from a modal basis obtained by FEM. Theoretically, the method is applicable to sources with complex 3D geometries and measurements can be carried out in a non-anechoic environment even in the presence of other stationary sources outside the virtual cavity. In the present paper, the theoretical background of the iPTF method is described and the results (numerical and experimental) for a source with simple geometry (two baffled pistons driven in antiphase) are presented and discussed.

  16. Background and Pickup Ion Velocity Distribution Dynamics in Titan's Plasma Environment: 3D Hybrid Simulation and Comparison with CAPS T9 Observations

    NASA Technical Reports Server (NTRS)

    Lipatov, A. S.; Sittler, E. C., Jr.; Hartle, R. E.; Cooper, J. F.; Simpson, D. G.

    2011-01-01

    In this report we discuss the ion velocity distribution dynamics from the 3D hybrid simulation. In our model the background, pickup, and ionospheric ions are considered as a particles, whereas the electrons are described as a fluid. Inhomogeneous photoionization, electron-impact ionization and charge exchange are included in our model. We also take into account the collisions between the ions and neutrals. The current simulation shows that mass loading by pickup ions H(+); H2(+), CH4(+) and N2(+) is stronger than in the previous simulations when O+ ions are introduced into the background plasma. In our hybrid simulations we use Chamberlain profiles for the atmospheric components. We also include a simple ionosphere model with average mass M = 28 amu ions that were generated inside the ionosphere. The moon is considered as a weakly conducting body. Special attention will be paid to comparing the simulated pickup ion velocity distribution with CAPS T9 observations. Our simulation shows an asymmetry of the ion density distribution and the magnetic field, including the formation of the Alfve n wing-like structures. The simulation also shows that the ring-like velocity distribution for pickup ions relaxes to a Maxwellian core and a shell-like halo.

  17. VizieR Online Data Catalog: 3D reddening map for stars from 2MASS phot. (Gontcharov, 2010)

    NASA Astrophysics Data System (ADS)

    Gontcharov, G. A.

    2016-07-01

    A three-dimensional reddening map for stars within 1100pc of the Sun are presented. Analysis of the distribution of 70 million stars from the 2MASS catalog with the most accurate photometry on the (J-Ks)-Ks diagram supplemented with Monte Carlo simulations has shown that one of the maxima of this distribution corresponds to F-type dwarfs and subgiants with a mean absolute magnitude MKs=2.5m. The shift of this maximum toward large (J-Ks) with increasing Ks reflects the reddening of these stars with increasing heliocentric distance. The distribution of the sample of stars over Ks, l, and b cells with a statistically significant number of stars in each cell corresponds to their distribution over three-dimensional spatial cells. As a result, the reddening E(J-Ks) has been determined with an accuracy of 0.03m for spatial cells with a side of 100pc. All of the known large absorbing clouds within 1100pc of the Sun have manifested themselves in the results obtained. The absorbing matter of the Gould Belt is shown to manifest itself at latitudes up to 40° and within 600pc of the Sun. The size and influence of the Gould Belt may have been underestimated thus far. The absorbing matter at latitudes up to 60° and within 1100pc of the Sun has been found to be distributed predominantly in the first and second quadrants in the southern hemisphere and in the third and fourth quadrants in the northern hemisphere. Also the data of the Rv (2012AstL...38...12G) and Av (2012AstL...38...87G) 3D maps are added. (1 data file).

  18. Using Lidar-derived 3-D Vegetation Structure Maps to Assist in the Search for the Ivory- billed Woodpecker

    NASA Astrophysics Data System (ADS)

    Hofton, M. A.; Blair, J. B.; Rabine, D.; Dubayah, R.; Greim, H.

    2006-12-01

    Averaging about 20 inches in length, the ivory-billed woodpecker is among the world's largest woodpeckers. It once ranged through swampy forests in the southeastern and lower Mississippi valley states, and until recently was believed to have become extinct in the 1940's when commercial logging destroyed its last known habitat. Recent sightings however, may indicate the birds' survival in remaining bottomland hardwood forest adjacent to the Cache and White Rivers in Arkansas. In June-July 2006, NASA's Laser Vegetation Imaging Sensor (LVIS) was used to map approximately 5000 km2 of the White River National Wildlife Refuge in Arkansas, including sites where recent possible sightings of the bird occurred. LVIS is an airborne, medium- footprint (5- to 25-meter diameter), full waveform-recording, airborne, scanning lidar system which has been used extensively for mapping forest structure, habitat, carbon and natural hazards. The system digitally records the shape of the returning laser echo, or waveform, after its interaction with the various reflecting surfaces of the earth (leaves, branches, ground, etc.), providing a true 3-dimensional record of the surface structure. Data collected included ground elevation and canopy height measurements for each laser footprint, as well as the vertical distribution of intercepted surfaces (the return waveform). Experimental metrics such as canopy structure metrics based on energy quartiles, as well as ground energy/canopy cover and waveform complexity metrics will be derived from each waveform. The project is a collaborative effort between the University of Maryland, NASA, USGS, and the US Fish and Wildlife Service. The LVIS-generated data of the 3- D vegetation structure and underlying terrain will be used as a means to guide local, ground-based search efforts in the upcoming field season as well as identify the remaining areas of habitat suitable for protection should the bird be found.

  19. Non-twist map bifurcation of drift-lines and drift-island formation in saturated 3D MHD equilibria

    NASA Astrophysics Data System (ADS)

    Pfefferle, David; Cooper, Wilfred A.; Graves, Jonathan P.

    2015-11-01

    Based on non-canonical perturbation theory, guiding-centre drift equations are identified as perturbed magnetic field-line equations. The topology of passing-particle orbits, called drift-lines, is completely determined by the magnetic configuration. In axisymmetric tokamak fields, drift-lines lie on shifted flux-surfaces, called drift-surfaces. Field-lines and drift-lines are subject to island structures at rational surfaces only when a non-axisymmetric component is added. The picture is different in the case of 3D saturated MHD equilibrium like the helical core associated with a non-resonant internal kink mode. In assuming nested flux-surfaces, these bifurcated states, expected for a reversed q-profile with qmin close yet above unity and conveniently obtained in VMEC, feature integrable field-lines. The helical drift-lines however become resonant with the axisymmetric component in the region of qmin and spontaneously generate drift-islands. Due to the locally reversed sheared q-profile, the drift-island structure follows the bifurcation/reconnection mechanism of non-twist maps. This result provides a theoretical interpretation of NBI fast ion helical hot-spots in Long-Lived Modes as well as snake-like impurity density accumulation in internal MHD activity.

  20. Multigrid mapping and box relaxation for simulation of the whole process of flow transition in 3-D boundary layers

    SciTech Connect

    Liu, C.; Liu, Z.

    1994-12-31

    A new multilevel technology was developed in this study which provides a successful numerical simulation for the whole process of flow transition in 3-D flat plate boundary layers, including linear growth, secondary instability, breakdown, and transition on a relatively coarse grid with low CPU cost. A fourth-order finite difference scheme on stretched and staggered grids, a fully implicit time-marching technique, a semi-coarsening multigrid based on the so-called approximate line-box relaxation, and a buffer domain for the outflow boundary conditions were all employed for high-order accuracy, good stability, and fast convergence. A new fine-coarse-fine grid mapping technique was developed to catch the large eddies and represent main roles of small eddies to keep the code running after the laminar flow breaks down. The computational results are in good agreement with linear stability theory, secondary instability theory, and some experiments. The computation also reproduced the K-type and C-type transition observed by laboratory experiments. The CPU cost for a typical case is around 2-9 CRAY-YMP hours.

  1. Velocity Map Imaging Studies of Non-Conventional Methanethiol Photochemistry

    NASA Astrophysics Data System (ADS)

    Toulson, Benjamin W.; Alaniz, Jonathan; Murray, Craig

    2014-06-01

    Velocity map imaging (VMI) in combination with state-selective resonance enhanced multiphoton ionization (REMPI) has been used to study the photodissociation dynamics of methanethiol following excitation to the first and second singlet electronically excited states. Formation of sulfur atoms, in both the singlet and triplet manifolds, is observed and can be attributed to primary dissociation of the parent molecule. We will report the nascent photofragment velocity distributions, and hence the internal energy of the methane co-fragment. Sulfur atom quantum yields are benchmarked against a known standard to evaluate the significance of this pathway. The role of non-conventional photochemical mechanisms such as roaming-mediated intersystem crossing, previously observed in methylamine photochemistry, will be discussed. James O. Thomas, Katherine E. Lower, and Craig Murray, The Journal of Physical Chemistry Letters, 2012, 3 (10), 1341-1345.

  2. New constraints on the 3D shear wave velocity structure of the upper mantle underneath Southern Scandinavia revealed from non-linear tomography

    NASA Astrophysics Data System (ADS)

    Wawerzinek, B.; Ritter, J. R. R.; Roy, C.

    2013-08-01

    We analyse travel times of shear waves, which were recorded at the MAGNUS network, to determine the 3D shear wave velocity (vS) structure underneath Southern Scandinavia. The travel time residuals are corrected for the known crustal structure of Southern Norway and weighted to account for data quality and pick uncertainties. The resulting residual pattern of subvertically incident waves is very uniform and simple. It shows delayed arrivals underneath Southern Norway compared to fast arrivals underneath the Oslo Graben and the Baltic Shield. The 3D upper mantle vS structure underneath the station network is determined by performing non-linear travel time tomography. As expected from the residual pattern the resulting tomographic model shows a simple and continuous vS perturbation pattern: a negative vS anomaly is visible underneath Southern Norway relative to the Baltic Shield in the east with a contrast of up to 4% vS and a sharp W-E dipping transition zone. Reconstruction tests reveal besides vertical smearing a good lateral reconstruction of the dipping vS transition zone and suggest that a deep-seated anomaly at 330-410 km depth is real and not an inversion artefact. The upper part of the reduced vS anomaly underneath Southern Norway (down to 250 km depth) might be due to an increase in lithospheric thickness from the Caledonian Southern Scandes in the west towards the Proterozoic Baltic Shield in Sweden in the east. The deeper-seated negative vS anomaly (330-410 km depth) could be caused by a temperature anomaly possibly combined with effects due to fluids or hydrous minerals. The determined simple 3D vS structure underneath Southern Scandinavia indicates that mantle processes might influence and contribute to a Neogene uplift of Southern Norway.

  3. 3D time-lapse seismic traveltime tomography for detecting near surface velocity variations: a case study from the Ketzin CO2 storage pilot site

    NASA Astrophysics Data System (ADS)

    Zhang, Fengjiao; Juhlin, Christopher; Huang, Fei; Lüth, Stefan

    2016-04-01

    Time-lapse seismic methods are an important tool for monitoring CO2 migration and storage in geological formations. Near surface variations are one of the major problems which may introduce time-lapse noise in the application of land based seismic monitoring. Conventional reflection seismic methods have difficulties in imaging near surface structures (10-30 m depth) due to the limitation of the methods themselves. Traveltime tomography is a commonly used method to reconstruct the subsurface velocity model. It can often provide extra information on near surface structures which is difficult to obtain by the conventional reflection seismic method. In this study, we apply traveltime tomography to 3D time-lapse seismic data sets acquired from at the Ketzin CO2 storage site. We also test different inversion strategies for traveltime tomography to investigate which one is more suitable for this case study. The results show good correlation with near surface variations obtained by other studies.

  4. Solar Wind Halo Formation by the Scattering of the Strahl via Direct Cluster/PEACE Observations of the 3D Velocity Distribution Function

    NASA Technical Reports Server (NTRS)

    Figueroa-Vinas, Adolfo; Gurgiolo, Chris A.; Nieves-Chinchilla, Teresa; Goldstein, Melvyn L.

    2010-01-01

    It has been suggested by a number of authors that the solar wind electron halo can be formed by the scattering of the strahl. On frequent occasions we have observed in electron angular skymaps (Phi/Theta-plots) of the electron 3D velocity distribution functions) a bursty-filament of particles connecting the strahl to the solar wind core-halo. These are seen over a very limited energy range. When the magnetic field is well off the nominal solar wind flow direction such filaments are inconsistent with any local forces and are probably the result of strong scattering. Furthermore, observations indicates that the strahl component is frequently and significantly anisotropic (Tper/Tpal approx.2). This provides a possible free energy source for the excitation of whistler waves as a possible scattering mechanism. The empirical observational evidence between the halo and the strahl suggests that the strahl population may be, at least in part, the source of the halo component.

  5. Velocity map ion imaging study of Ar2+ photodissociation

    NASA Astrophysics Data System (ADS)

    Maner, J. A.; Mauney, D. T.; Duncan, M. A.

    2017-03-01

    The argon dimer cation is produced in a plasma generated by a laser spark in a supersonic expansion. The cold ions are mass selected and investigated by photodissociation at 355 nm, with velocity map imaging of the Ar+ photofragment. Using the radius of the image, we determine the kinetic energy release and derive the ground state dissociation energy of Ar2+ as D0″ = 1.32 +0.03/-0.02 eV. Additionally, the angular distribution is described with β = 1.71-1.95, consistent with excitation of the parallel-type 2Σg+ ← 2Σu+ transition.

  6. Contribution of a 3D velocity model and of beam forming method for the location of microseismic sources generated in soft rock landslides

    NASA Astrophysics Data System (ADS)

    Provost, Floriane; Malet, Jean-Philippe; Helmstetter, Agnès; Doubre, Cécile; Gance, Julien

    2016-04-01

    Microseismicity monitoring has proven to be an important tool for a better understanding of the deformation occurring in slow-sliding landslides. However locating the seismic sources generated by a landslide remains a challenging problem due to (1) the small sizes of the landslide, (b) the heterogenous and time-changing petro-physical properties of the landslide material, (c) the complexity of the recorded signals with unclear discriminations of the wave onsets, and (d) the difficulties to install and maintain a dense seismological network on-site close to the seismic sources. We studied the seismic sources generated by the deformation of the clay-rich Super-Sauze landslide (South French Alps). Previous studies show that the most active zone is the uphill part of the landslide within a zone of 300x300m2. Two seismic antennas have been installed on the sides of this zone and a seismic campaign was conducted to build a 3D velocity model of the area. Calibration shots were performed to test the performance of the location method. We show that the use of a 3D velocity model integrated in a beam forming location method slightly improves the accuracy of the shot location epicenter. However, this approach does not help to interpret with confidence the location of the natural events because the horizontal error remains larger than 50m for more than 50% of the shots. Nevertheless, adding station corrections and constraining the grid search area with additional informations based on the signal and the landslide behavior such as SNR, seismic event typology, and surface kinematics of the landslide allow obtaining reliable results. More than 70% of the calibration shots could be located with a horizontal error of less than 40m. The lack of sensor installed in depth as well as the the lack of calibration shots realized at different depths does not permit us to identify the depth of the sources.

  7. Constructing a starting 3D shear velocity model with sharp interfaces for SEM-based upper mantle tomography in North America

    NASA Astrophysics Data System (ADS)

    Calo, M.; Bodin, T.; Yuan, H.; Romanowicz, B. A.; Larmat, C. S.; Maceira, M.

    2013-12-01

    this work we propose instead to directly tackle the non-linearity of the inverse problem by using stochastic methods to construct a 3D starting model with a good estimate of the depths of the main layering interfaces. We present preliminary results of the construction of such a starting 3D model based on: (1) Regionalizing the study area to define provinces within which lateral variations are smooth; (2) Applying trans-dimensional stochastic inversion (Bodin et al., 2012) to obtain accurate 1D models in each province as well as the corresponding error distribution, constrained by receiver function and surface wave dispersion data as well as the previously constructed 3D model (name), and (3) connecting these models laterally using data-driven smoothing operators to obtain a starting 3D model with errors. References Bodin, T.,et al. 2012, Transdimensional inversion of receiver functions and surface wave dispersion, J. Geophys. Res., 117, B02301, doi:10.1029/2011JB008560. Yuan and Romanowicz, 2013, in revison. Yuan, H., et al. 2011, 3-D shear wave radially and azimuthally anisotropic velocity model of the North American upper mantle. Geophysical Journal International, 184: 1237-1260. doi: 10.1111/j.1365-246X.2010.04901.x Yuan, H. & Romanowicz, B., 2010. Lithospheric layering in the North American Craton, Nature, 466, 1063-1068.

  8. Using twelve years of USGS refraction lines to calibrate the Brocher and others (1997) 3D velocity model of the Bay Area

    USGS Publications Warehouse

    Boatwright, John; Blair, Luke; Catchings, Rufus; Goldman, Mark; Perosi, Fabio; Steedman, Clare

    2004-01-01

    Campbell (1983) demonstrated that site amplification correlates with depths to the 1.0, 1.5, and 2.5 km/s S-wave velocity horizons. To estimate these depths for the Bay Area stations in the PEER/NGA database, we compare the depths to the 3.2 and 4.4 km/s P-wave velocities in the Brocher and others (1997) 3D velocity model with the depths to these horizons determined from 6 refraction lines shot in the Bay Area from 1991 to 2003. These refraction lines range from two recent 20 km lines that extend from Los Gatos to downtown San Jose, and from downtown San Jose into Alum Rock Park, to two older 200 km lines than run axially from Hollister up the San Francisco Peninsula to Inverness and from Hollister up the East Bay across San Pablo Bay to Santa Rosa. Comparison of these cross-sections with the Brocher and others (1997) model indicates that the 1.5 km/s S-wave horizon, which we correlate with the 3.2 km/s P-wave horizon, is the most reliable horizon that can be extracted from the Brocher and others (1997) velocity model. We determine simple adjustments to bring the Brocher and others (1997) 3.2 and 4.4 km/s P-wave horizons into an average agreement with the refraction results. Then we apply these adjustments to estimate depths to the 1.5 and 2.5 km/s S-wave horizons beneath the strong motion stations in the PEER/NGA database.

  9. Polyphase tertiary fold-and-thrust tectonics in the Belluno Dolomites: new mapping, kinematic analysis, and 3D modelling

    NASA Astrophysics Data System (ADS)

    Chistolini, Filippo; Bistacchi, Andrea; Massironi, Matteo; Consonni, Davide; Cortinovis, Silvia

    2014-05-01

    performed a dip-domain analysis that allowed to categorize the different fold limbs and reduce the uncertainty in the reconstruction of the fault network topology in map view. This enabled us to reconstruct a high-quality, low-uncertainty 3D structural and geological model, which unambiguously proves that deformations with a top-to-WSW Dinaric transport direction propagate farther to the west than previously supposed in this part of the Southern Alps. Our new structural reconstruction of the Vajont valley have also clarified the structural control on the 1963 catastrophic landslide (which caused over 2000 losses). Besides being a challenging natural laboratory for testing analysis and modelling methodologies to be used when reconstructing in 3D this kind of complex interference structures, the Vajont area also provides useful clues on the still-enigmatic structures in the frontal part of the Friuli-Venetian Southern Alps, buried in the Venetian Plain foredeep. These include active seismogenic thrust-faults and, at the same time, represent a growing interest for the oil industry.

  10. NeuroMap: A Spline-Based Interactive Open-Source Software for Spatiotemporal Mapping of 2D and 3D MEA Data.

    PubMed

    Abdoun, Oussama; Joucla, Sébastien; Mazzocco, Claire; Yvert, Blaise

    2011-01-01

    A major characteristic of neural networks is the complexity of their organization at various spatial scales, from microscopic local circuits to macroscopic brain-scale areas. Understanding how neural information is processed thus entails the ability to study them at multiple scales simultaneously. This is made possible using microelectrodes array (MEA) technology. Indeed, high-density MEAs provide large-scale coverage (several square millimeters) of whole neural structures combined with microscopic resolution (about 50 μm) of unit activity. Yet, current options for spatiotemporal representation of MEA-collected data remain limited. Here we present NeuroMap, a new interactive Matlab-based software for spatiotemporal mapping of MEA data. NeuroMap uses thin plate spline interpolation, which provides several assets with respect to conventional mapping methods used currently. First, any MEA design can be considered, including 2D or 3D, regular or irregular, arrangements of electrodes. Second, spline interpolation allows the estimation of activity across the tissue with local extrema not necessarily at recording sites. Finally, this interpolation approach provides a straightforward analytical estimation of the spatial Laplacian for better current sources localization. In this software, coregistration of 2D MEA data on the anatomy of the neural tissue is made possible by fine matching of anatomical data with electrode positions using rigid-deformation-based correction of anatomical pictures. Overall, NeuroMap provides substantial material for detailed spatiotemporal analysis of MEA data. The package is distributed under GNU General Public License and available at http://sites.google.com/site/neuromapsoftware.

  11. New insights in the velocity dependency of the external mass transfer coefficient in 2D and 3D porous media for liquid chromatography.

    PubMed

    Deridder, Sander; Desmet, Gert

    2012-03-02

    Numerical calculations of the mobile zone mass transfer rate in a variety of ordered 2D and 3D structures are presented. These calculations are in line with earlier theoretical and experimental findings made in the field of chemical engineering and suggest that the Sherwood-number (Sh(m)) appearing in the mobile phase mass transfer term of the general plate height expression of liquid chromatography is not correctly predicted by the Wilson-Geankoplis--or the Kataoka--or the penetration model expression that have been used up to now to in the field of LC, and that at least more research is needed before these expressions can be continued to be used with confidence. The aforementioned expressions were obtained by neglecting the effect of axial dispersion on the mass transfer process, and it seems that they therefore underestimate the true Sh(m)-number by a factor of 2-5 around the minimum of the van Deemter-curve. New correlations describing the variation of the Sh(m)-coefficient as a function of the reduced velocity for a number of other packing geometries (tetrahedral monolith, 2D pillar array) are proposed. These correlations are in agreement with earlier theoretical and experimental studies showing that at low velocities the local-driving force-based Sh(m)-value is of the order of 10-20 in a packed bed column with an external porosity on the order of 35-40%.

  12. Accelerated mapping of magnetic susceptibility using 3D planes-on-a-paddlewheel (POP) EPI at ultra-high field strength.

    PubMed

    Stäb, Daniel; Bollmann, Steffen; Langkammer, Christian; Bredies, Kristian; Barth, Markus

    2017-04-01

    With the advent of ultra-high field MRI scanners in clinical research, susceptibility based MRI has recently gained increasing interest because of its potential to assess subtle tissue changes underlying neurological pathologies/disorders. Conventional, but rather slow, three-dimensional (3D) spoiled gradient-echo (GRE) sequences are typically employed to assess the susceptibility of tissue. 3D echo-planar imaging (EPI) represents a fast alternative but generally comes with echo-time restrictions, geometrical distortions and signal dropouts that can become severe at ultra-high fields. In this work we assess quantitative susceptibility mapping (QSM) at 7 T using non-Cartesian 3D EPI with a planes-on-a-paddlewheel (POP) trajectory, which is created by rotating a standard EPI readout train around its own phase encoding axis. We show that the threefold accelerated non-Cartesian 3D POP EPI sequence enables very fast, whole brain susceptibility mapping at an isotropic resolution of 1 mm and that the high image quality has sufficient signal-to-noise ratio in the phase data for reliable QSM processing. The susceptibility maps obtained were comparable with regard to QSM values and geometric distortions to those calculated from a conventional 4 min 3D GRE scan using the same QSM processing pipeline. Copyright © 2016 John Wiley & Sons, Ltd.

  13. Ice Velocity Map of Antarctica measured with ALOS PALSAR

    NASA Astrophysics Data System (ADS)

    Mouginot, J.; Scheuchl, B.; Rignot, E. J.

    2010-12-01

    Ice velocity is fundamental characteristic of the dynamics of ice sheet and is essential to know for measuring the mass budget of ice sheet and for controlling ice sheet numerical models with realistic boundary conditions. Until recently, data were mostly available on a discrete basis over small areas with variable precision. Here, we report on our results of processing ice velocity from he interferometric synthetic-aperture radar data acquired by ALOS PALSAR in 2007, 2008 and 2009 by the Japan Aerospace Exploration Agency (JAXA) and distributed by NASA's Alaska Satellite Facility (ASF). The goal of our project is to produce a new set of Earth Science Data Record (ESDR): high-resolution digital maps of ice velocity of the Antarctic ice sheet. This new ESDR will be based on spaceborne Synthetic Aperture Radar (SAR) data from multiple missions. It will be distributed to the scientific community via institutional links already in place at the National Snow and Ice Data Center (NSIDC). The EDSR will benefit glaciologists and ice sheet modelers, but also climate modelers interested in how ice sheets are evolving, physical oceanographers studying sea level change and changes in oceanic circulation, solid earth scientists interested in post-glacial rebound, atmospheric scientists interested in surface mass balance in Antarctica. This effort will establish a long-term legacy for quantitative measurements of the dynamics of polar ice sheets. Areas north of 78 degrees south were first covered by RADARSAT-1 during the RAMP campaign. ALOS PALSAR and ENVISAT ASAR were tasked to cover the area in 2007, 2008 and 2009. PALSAR 46-day speckle tracking works well even in areas where C-band sensors lose signal coherence, which helps us to complete a full coverage of Antarctica's coastal regions. One challenge for L-band data is the sensitivity to ionosphere disturbances and another is to lower data noise in vast interior where flow velocities drop to below a few meters per year. We

  14. Characterization of a subwavelength-scale 3D void structure using the FDTD-based confocal laser scanning microscopic image mapping technique.

    PubMed

    Choi, Kyongsik; Chon, James W; Gu, Min; Lee, Byoungho

    2007-08-20

    In this paper, a simple confocal laser scanning microscopic (CLSM) image mapping technique based on the finite-difference time domain (FDTD) calculation has been proposed and evaluated for characterization of a subwavelength-scale three-dimensional (3D) void structure fabricated inside polymer matrix. The FDTD simulation method adopts a focused Gaussian beam incident wave, Berenger's perfectly matched layer absorbing boundary condition, and the angular spectrum analysis method. Through the well matched simulation and experimental results of the xz-scanned 3D void structure, we first characterize the exact position and the topological shape factor of the subwavelength-scale void structure, which was fabricated by a tightly focused ultrashort pulse laser. The proposed CLSM image mapping technique based on the FDTD can be widely applied from the 3D near-field microscopic imaging, optical trapping, and evanescent wave phenomenon to the state-of-the-art bio- and nanophotonics.

  15. A Detailed Kinematic Map of Cassiopeia A's Optical Main Shell and Outer High-velocity Ejecta

    NASA Astrophysics Data System (ADS)

    Milisavljevic, Dan; Fesen, Robert A.

    2013-08-01

    We present three-dimensional (3D) kinematic reconstructions of optically emitting material in the young Galactic supernova remnant Cassiopeia A (Cas A). These Doppler maps have the highest spectral and spatial resolutions of any previous survey of Cas A and represent the most complete catalog of its optically emitting material to date. We confirm that the bulk of Cas A's optically bright ejecta populate a torus-like geometry tilted approximately 30° with respect to the plane of the sky with a -4000 to +6000 km s-1 radial velocity asymmetry. Near-tangent viewing angle effects and an inhomogeneous surrounding circumstellar material/interstellar medium environment suggest that this geometry and velocity asymmetry may not be faithfully representative of the remnant's true 3D structure or the kinematic properties of the original explosion. The majority of the optical ejecta are arranged in several well-defined and nearly circular ring-like structures with diameters between approximately 30'' (0.5 pc) and 2' (2 pc). These ejecta rings appear to be a common phenomenon of young core-collapse remnants and may be associated with post-explosion input of energy from plumes of radioactive 56Ni-rich ejecta that rise, expand, and compress non-radioactive material. Our optical survey encompasses Cas A's faint outlying ejecta knots and exceptionally high-velocity NE and SW streams of S-rich debris often referred to as "jets." These outer knots, which exhibit a chemical make-up suggestive of an origin deep within the progenitor star, appear to be arranged in opposing and wide-angle outflows with opening half-angles of ≈40°.

  16. A DETAILED KINEMATIC MAP OF CASSIOPEIA A'S OPTICAL MAIN SHELL AND OUTER HIGH-VELOCITY EJECTA

    SciTech Connect

    Milisavljevic, Dan; Fesen, Robert A.

    2013-08-01

    We present three-dimensional (3D) kinematic reconstructions of optically emitting material in the young Galactic supernova remnant Cassiopeia A (Cas A). These Doppler maps have the highest spectral and spatial resolutions of any previous survey of Cas A and represent the most complete catalog of its optically emitting material to date. We confirm that the bulk of Cas A's optically bright ejecta populate a torus-like geometry tilted approximately 30 Degree-Sign with respect to the plane of the sky with a -4000 to +6000 km s{sup -1} radial velocity asymmetry. Near-tangent viewing angle effects and an inhomogeneous surrounding circumstellar material/interstellar medium environment suggest that this geometry and velocity asymmetry may not be faithfully representative of the remnant's true 3D structure or the kinematic properties of the original explosion. The majority of the optical ejecta are arranged in several well-defined and nearly circular ring-like structures with diameters between approximately 30'' (0.5 pc) and 2' (2 pc). These ejecta rings appear to be a common phenomenon of young core-collapse remnants and may be associated with post-explosion input of energy from plumes of radioactive {sup 56}Ni-rich ejecta that rise, expand, and compress non-radioactive material. Our optical survey encompasses Cas A's faint outlying ejecta knots and exceptionally high-velocity NE and SW streams of S-rich debris often referred to as ''jets''. These outer knots, which exhibit a chemical make-up suggestive of an origin deep within the progenitor star, appear to be arranged in opposing and wide-angle outflows with opening half-angles of Almost-Equal-To 40 Degree-Sign.

  17. A Detailed 3D Seismic Velocity Structure of the Subducting Pacific Slab Beneath Hokkaido, Tohoku and Kanto, Japan, by Double-Difference Tomography

    NASA Astrophysics Data System (ADS)

    Tsuji, Y.; Nakajima, J.; Kita, S.; Okada, T.; Matsuzawa, T.; Hasegawa, A.

    2007-12-01

    Three-dimensional heterogeneous structure beneath northeastern (NE) Japan has been investigated by previous studies and an inclined seismic low-velocity zone is imaged in the mantle wedge sub-parallel to the down-dip direction of the subducting slab (Zhao et al., 1992, Nakajima et al., 2001). However, the heterogeneous structure within the slab has not been well studied even though it is very important to understand the whole process of water transportation from the slab to the surface. Here we show a detailed 3D seismic velocity structure within the subducted Pacific slab around Japan and propose a water-transportation path from the slab to the mantle wedge. In this study, we estimated 3D velocity structure within the Pacific slab by the double-difference tomography (Zhang and Thurber, 2003). We divided the study area, from Hokkaido to Kanto, into 6 areas due to the limitation of memory and computation time. In each area, arrival-time data of 7,500-17,000 events recorded at 70-170 stations were used in the analysis. The total number of absolute travel-time data was about 140,000-312,000 for P wave and 123,000-268,000 for S wave, and differential data were about 736,000-1,920,000 for P wave and 644,000-1,488,000 for S wave. Horizontal and vertical grid separations are 10-25 km and 6.5 km, respectively. RMS residuals of travel times for P wave decreased from 0.23s to 0.09s and for S wave from 0.35s to 0.13s. The obtained results are as follows: (1) a remarkable low-Vs zone exists in the uppermost part of the subducting slab, (2) it extends down to a depth of about 80 km, (3) the termination of this low-Vs zone almost corresponds to the "seismic belt" recently detected in the upper plane of the double seismic zone (Kita et al.,2006; Hasegawa et al., 2007), (4) at depths deeper than 80 km, a low-Vs and high-Vp/Vs zone is apparently distributed in the mantle wedge, immediately above the slab crust. We consider that these features reflect water-transportation processes

  18. Three-Dimensional Mapping of Soil Chemical Characteristics at Micrometric Scale by Combining 2D SEM-EDX Data and 3D X-Ray CT Images

    PubMed Central

    Hapca, Simona; Baveye, Philippe C.; Wilson, Clare; Lark, Richard Murray; Otten, Wilfred

    2015-01-01

    There is currently a significant need to improve our understanding of the factors that control a number of critical soil processes by integrating physical, chemical and biological measurements on soils at microscopic scales to help produce 3D maps of the related properties. Because of technological limitations, most chemical and biological measurements can be carried out only on exposed soil surfaces or 2-dimensional cuts through soil samples. Methods need to be developed to produce 3D maps of soil properties based on spatial sequences of 2D maps. In this general context, the objective of the research described here was to develop a method to generate 3D maps of soil chemical properties at the microscale by combining 2D SEM-EDX data with 3D X-ray computed tomography images. A statistical approach using the regression tree method and ordinary kriging applied to the residuals was developed and applied to predict the 3D spatial distribution of carbon, silicon, iron, and oxygen at the microscale. The spatial correlation between the X-ray grayscale intensities and the chemical maps made it possible to use a regression-tree model as an initial step to predict the 3D chemical composition. For chemical elements, e.g., iron, that are sparsely distributed in a soil sample, the regression-tree model provides a good prediction, explaining as much as 90% of the variability in some of the data. However, for chemical elements that are more homogenously distributed, such as carbon, silicon, or oxygen, the additional kriging of the regression tree residuals improved significantly the prediction with an increase in the R2 value from 0.221 to 0.324 for carbon, 0.312 to 0.423 for silicon, and 0.218 to 0.374 for oxygen, respectively. The present research develops for the first time an integrated experimental and theoretical framework, which combines geostatistical methods with imaging techniques to unveil the 3-D chemical structure of soil at very fine scales. The methodology presented

  19. Three-Dimensional Mapping of Soil Chemical Characteristics at Micrometric Scale by Combining 2D SEM-EDX Data and 3D X-Ray CT Images.

    PubMed

    Hapca, Simona; Baveye, Philippe C; Wilson, Clare; Lark, Richard Murray; Otten, Wilfred

    2015-01-01

    There is currently a significant need to improve our understanding of the factors that control a number of critical soil processes by integrating physical, chemical and biological measurements on soils at microscopic scales to help produce 3D maps of the related properties. Because of technological limitations, most chemical and biological measurements can be carried out only on exposed soil surfaces or 2-dimensional cuts through soil samples. Methods need to be developed to produce 3D maps of soil properties based on spatial sequences of 2D maps. In this general context, the objective of the research described here was to develop a method to generate 3D maps of soil chemical properties at the microscale by combining 2D SEM-EDX data with 3D X-ray computed tomography images. A statistical approach using the regression tree method and ordinary kriging applied to the residuals was developed and applied to predict the 3D spatial distribution of carbon, silicon, iron, and oxygen at the microscale. The spatial correlation between the X-ray grayscale intensities and the chemical maps made it possible to use a regression-tree model as an initial step to predict the 3D chemical composition. For chemical elements, e.g., iron, that are sparsely distributed in a soil sample, the regression-tree model provides a good prediction, explaining as much as 90% of the variability in some of the data. However, for chemical elements that are more homogenously distributed, such as carbon, silicon, or oxygen, the additional kriging of the regression tree residuals improved significantly the prediction with an increase in the R2 value from 0.221 to 0.324 for carbon, 0.312 to 0.423 for silicon, and 0.218 to 0.374 for oxygen, respectively. The present research develops for the first time an integrated experimental and theoretical framework, which combines geostatistical methods with imaging techniques to unveil the 3-D chemical structure of soil at very fine scales. The methodology presented

  20. Ice Velocity Mapping in Antarctica: A Game Changing ESDR

    NASA Astrophysics Data System (ADS)

    Scheuchl, B.; Mouginot, J.; Rignot, E. J.

    2011-12-01

    We present a new ESDR, an accomplishment of historical importance for geophysics: A complete mapping of the flow of ice surface over the Antarctic continent. This ESDR is based on data from a suite of spaceborne Synthetic Aperture Radar (SAR) sensors acquired during the International Polar Year 2007-2009. It is a reference digital mosaic of ice motion that will establish a long-term legacy for quantitative measurements of the dynamics of polar ice sheets. The resulting map will benefit glaciologists and ice sheet modelers, but also climate modelers interested in how ice sheets are evolving, physical oceanographers studying sea level change and changes in oceanic circulation, solid earth scientists interested in post-glacial rebound, and atmospheric scientists interested in surface mass balance in Antarctica. The ESDR will be made available to the scientific community via institutional links already in place. The data products have a simple definition: Ice velocity, in meters per year, measured on a regular earth fixed grid, at 1km resolution. A higher resolution product will be made available in subsequent years. The product is a snapshot of the entire continent as opposed to a series of discrete measurements. Calibration and mosaicking of the data required the development of new algorithms and workflows fully utilizing the unique combination of sensors available. Sensor-based stacking of the multiple coverages available further reduces the error of the product where possible. An error map is part of the ESDR; it was constructed to be distributed with the ice motion information. We also released the first complete and accurate map of grounding line positions around Antarctica combining 19 years of satellite data. This map completely refines the coastline of Antarctica since prior maps included large (km to 10 km) errors. This work was conducted at the Department of Earth System Science, University of California Irvine under a contract with the National Aeronautics

  1. Ice Velocity Mapping Using TOPS SAR Data and Offset Tracking

    NASA Astrophysics Data System (ADS)

    Dall, Jorgen; Kusk, Anders; Nielsen, Ulrik; Merryman Boncori, John Peter

    2015-05-01

    Feature tracking and speckle tracking, are robust techniques to measure the velocity of glaciers and ice sheets. Displacement maps based on TOPS data may have small gaps if the bursts are not handled properly. Ice moving from one burst to a consecutive burst between two observations is not observed under the same squint angle, and hence speckle tracking is supposed to fail when cross-correlating consecutive bursts, whereas feature tracking provides the same result as when cross-correlating corresponding bursts. The size of the potential gaps depends on the ice displacement and the choice of Sentinel-1 product, as consecutive bursts overlap in the SLC product but not in the GRD product. An analysis of Sentinel-1 data from Greenland confirms the results expected from theory.

  2. 'Molecular photography': velocity-map imaging of chemical events.

    PubMed

    Vallance, Claire

    2004-12-15

    Every chemical reaction bears its own unique fingerprint, embodied in the kinetic energy, angular distribution and rotational and vibrational motion of the newly formed reaction products. These quantities reflect the forces acting during the chemical reaction, and their measurement often provides unparalleled insight into the basic physics governing chemical reactivity. One experimental technique that has truly captured the imagination of the reaction-dynamics community is velocity-map ion imaging, which provides a visual 'snapshot' of the complete product scattering distribution in a single measurement. Originally developed to study gas-phase photodissociation, the technique is now routinely being applied to bimolecular processes, particularly inelastic and reactive scattering. This article will review recent developments in the field, using examples from studies of a range of chemical processes.

  3. Improved sliced velocity map imaging apparatus optimized for H photofragments

    SciTech Connect

    Ryazanov, Mikhail; Reisler, Hanna

    2013-04-14

    Time-sliced velocity map imaging (SVMI), a high-resolution method for measuring kinetic energy distributions of products in scattering and photodissociation reactions, is challenging to implement for atomic hydrogen products. We describe an ion optics design aimed at achieving SVMI of H fragments in a broad range of kinetic energies (KE), from a fraction of an electronvolt to a few electronvolts. In order to enable consistently thin slicing for any imaged KE range, an additional electrostatic lens is introduced in the drift region for radial magnification control without affecting temporal stretching of the ion cloud. Time slices of {approx}5 ns out of a cloud stretched to Greater-Than-Or-Slanted-Equal-To 50 ns are used. An accelerator region with variable dimensions (using multiple electrodes) is employed for better optimization of radial and temporal space focusing characteristics at each magnification level. The implemented system was successfully tested by recording images of H fragments from the photodissociation of HBr, H{sub 2}S, and the CH{sub 2}OH radical, with kinetic energies ranging from <0.4 eV to >3 eV. It demonstrated KE resolution Less-Than-Or-Equivalent-To 1%-2%, similar to that obtained in traditional velocity map imaging followed by reconstruction, and to KE resolution achieved previously in SVMI of heavier products. We expect it to perform just as well up to at least 6 eV of kinetic energy. The tests showed that numerical simulations of the electric fields and ion trajectories in the system, used for optimization of the design and operating parameters, provide an accurate and reliable description of all aspects of system performance. This offers the advantage of selecting the best operating conditions in each measurement without the need for additional calibration experiments.

  4. Exploring the Impact of Visual Complexity Levels in 3d City Models on the Accuracy of Individuals' Orientation and Cognitive Maps

    NASA Astrophysics Data System (ADS)

    Rautenbach, V.; Çöltekin, A.; Coetzee, S.

    2015-08-01

    In this paper we report results from a qualitative user experiment (n=107) designed to contribute to understanding the impact of various levels of complexity (mainly based on levels of detail, i.e., LoD) in 3D city models, specifically on the participants' orientation and cognitive (mental) maps. The experiment consisted of a number of tasks motivated by spatial cognition theory where participants (among other things) were given orientation tasks, and in one case also produced sketches of a path they `travelled' in a virtual environment. The experiments were conducted in groups, where individuals provided responses on an answer sheet. The preliminary results based on descriptive statistics and qualitative sketch analyses suggest that very little information (i.e., a low LoD model of a smaller area) might have a negative impact on the accuracy of cognitive maps constructed based on a virtual experience. Building an accurate cognitive map is an inherently desired effect of the visualizations in planning tasks, thus the findings are important for understanding how to develop better-suited 3D visualizations such as 3D city models. In this study, we specifically discuss the suitability of different levels of visual complexity for development planning (urban planning), one of the domains where 3D city models are most relevant.

  5. High-Resolution Seismic Images and 3-D Seismic Velocities of the San Andreas Fault Zone at Burro Flats, Southern California

    NASA Astrophysics Data System (ADS)

    Tsai, C.; Catchings, R. D.; Rymer, M. J.; Goldman, M. R.

    2003-12-01

    The southern San Andreas fault (SAF) has produced large earthquakes in the past 1500 yrs. Burro Flats, a basin within the San Bernardino Mountains, is bounded on the southwest by the southern San Andreas fault. Burro Flats has been the site of paleoseismological investigations to determine the slip history of the fault. Additional paleoseismic studies at this location are needed to further resolve the structure and slip history of the SAF. In addition to the main trace of the SAF at Burro Flats, there are splay faults, suggesting a complex geometry for the fault. To better understand the structure of the SAF, we acquired a 3-D, combined seismic reflection/refraction profile centered on the main trace at Burro Flats. The seismic investigation included a 60 m by 70 m rectangular array. Sensors were spaced every 5 m; seismic sources, likewise with a spacing of 5 m, consisted of a combination of down-hole explosives and shallow (approximately 0.3 m) Betsy Seisgun shots. Data were recorded without acquisition filters for 5 s at a 0.5-ms sampling rate. To analyze the data for velocity structure, we used a tomographic inversion procedure to invert first-arrival refractions. Preliminary measurements from shot gathers show that near-surface velocities range between 700 m/s and 1500 m/s. We observe apparent travel-time delays of approximately 7 ms near the main surface trace of the SAF, suggesting that seismic imaging methods may be useful in identifying this and other fault traces. These results will be useful for paleoseismic investigations.

  6. Solar Wind Halo Formation by the Scattering of the Strahl: Direct Cluster/PEACE Observations of the 3D Velocity Distribution Function

    NASA Astrophysics Data System (ADS)

    Vinas, A. F.; Gurgiolo, C. A.; Nieves-Chinchilla, T.; Wendel, D. E.; Goldstein, M. L.; Fazakerley, A. N.

    2010-12-01

    The current hypothesis of the formation of the solar wind halo electrons is that they are produced from scattering of the strahl. This hypothesis is strengthened by direct observations of the strahl electrons being scattered into the halo in an isolated event. On frequent occasions we have observed in electron angular skymaps (Phi/Theta-plots) of the electron 3D velocity distribution functions, a bursty-filament of particles connecting the strahl to the solar wind core-halo. These are seen over a limited energy range. The observation implies that the formation of the halo is not a continuous process but occurs in bursts in regions where conditions for wave growth providing the scattering are optimum. Sometimes, observations indicates that the strahl component is anisotropic (Tper/Tpal ~ 2). This provides a possible free energy source for the excitation of whistler waves as a possible scattering mechanism, however this condition is not always observed. The empirical observational evidence between the halo and the strahl suggests that the strahl population may be, at least in part, the source of the halo component.

  7. Mapping 3D Strains with Ultrasound Speckle Tracking: Method Validation and Initial Results in Porcine Scleral Inflation.

    PubMed

    Cruz Perez, Benjamin; Pavlatos, Elias; Morris, Hugh J; Chen, Hong; Pan, Xueliang; Hart, Richard T; Liu, Jun

    2016-07-01

    This study aimed to develop and validate a high frequency ultrasound method for measuring distributive, 3D strains in the sclera during elevations of intraocular pressure. A 3D cross-correlation based speckle-tracking algorithm was implemented to compute the 3D displacement vector and strain tensor at each tracking point. Simulated ultrasound radiofrequency data from a sclera-like structure at undeformed and deformed states with known strains were used to evaluate the accuracy and signal-to-noise ratio (SNR) of strain estimation. An experimental high frequency ultrasound (55 MHz) system was built to acquire 3D scans of porcine eyes inflated from 15 to 17 and then 19 mmHg. Simulations confirmed good strain estimation accuracy and SNR (e.g., the axial strains had less than 4.5% error with SNRs greater than 16.5 for strains from 0.005 to 0.05). Experimental data in porcine eyes showed increasing tensile, compressive, and shear strains in the posterior sclera during inflation, with a volume ratio close to one suggesting near-incompressibility. This study established the feasibility of using high frequency ultrasound speckle tracking for measuring 3D tissue strains and its potential to characterize physiological deformations in the posterior eye.

  8. 3D velocity field time series using synthetic aperture radar: application to tidal-timescale ice-flow variability in Rutford Ice Stream, West Antarctica

    NASA Astrophysics Data System (ADS)

    Milillo, Pietro; Minchew, Brent; Agram, Piyush; Riel, Bryan; Simons, Mark

    2016-10-01

    We present a general method for retrieving time-series of three component surface velocity field vector given a set of continuous synthetic aperture radar (SAR) acquisitions collected from multiple geometries. Our algorithm extends the single-line-of-sight mathematical framework developed for time-series analysis using interferometric SAR (InSAR) to three spatial dimensions. The inversion is driven by a design matrix corresponding to a dictionary of displacement functions parameterized in time. The resulting model minimizes a cost function using a non-regularized least-squares method. We applied our method to Rutford ice stream (RIS), West Antarctica, using a set of 101 multi-track multi-angle COSMO-SkyMed displacement maps generating azimuth and range pixel offsets.

  9. Evaluation of the User Strategy on 2d and 3d City Maps Based on Novel Scanpath Comparison Method and Graph Visualization

    NASA Astrophysics Data System (ADS)

    Dolezalova, J.; Popelka, S.

    2016-06-01

    The paper is dealing with scanpath comparison of eye-tracking data recorded during case study focused on the evaluation of 2D and 3D city maps. The experiment contained screenshots from three map portals. Two types of maps were used - standard map and 3D visualization. Respondents' task was to find particular point symbol on the map as fast as possible. Scanpath comparison is one group of the eye-tracking data analyses methods used for revealing the strategy of the respondents. In cartographic studies, the most commonly used application for scanpath comparison is eyePatterns that output is hierarchical clustering and a tree graph representing the relationships between analysed sequences. During an analysis of the algorithm generating a tree graph, it was found that the outputs do not correspond to the reality. We proceeded to the creation of a new tool called ScanGraph. This tool uses visualization of cliques in simple graphs and is freely available at www.eyetracking.upol.cz/scangraph. Results of the study proved the functionality of the tool and its suitability for analyses of different strategies of map readers. Based on the results of the tool, similar scanpaths were selected, and groups of respondents with similar strategies were identified. With this knowledge, it is possible to analyse the relationship between belonging to the group with similar strategy and data gathered from the questionnaire (age, sex, cartographic knowledge, etc.) or type of stimuli (2D, 3D map).

  10. A new approach to obtaining a 3D shear wave velocity model of the crust and upper mantle: An application to eastern Turkey

    NASA Astrophysics Data System (ADS)

    Delph, Jonathan R.; Zandt, George; Beck, Susan L.

    2015-12-01

    We present a new approach to the joint inversion of surface wave dispersion data and receiver functions by utilizing Common Conversion Point (CCP) stacking to reconcile the different sampling domains of the two datasets. Utilizing CCP stacking allows us to suppress noise in the data by waveform stacking, and correct for backazimuthal variations and complex crustal structure by mapping receiver functions back to their theoretical location. When applied to eastern Turkey, this approach leads to a higher resolution image of the subsurface and clearly delineates different tectonic features in eastern Turkey that were not apparent using other approaches. We observe that the slow seismic velocities near the Karliova Triple Junction correlate to moderate strain rates and high heat flow, which leads to a rheologically weak crust that has allowed for the upward propagation of Miocene and younger volcanics near the triple junction. We find seismically fast, presumably rigid blocks located in the southeastern Anatolian Plate and Arabian Plate are separated by a band of low shear wave velocities that correspond to the East Anatolian Fault Zone, which is consistent with the presence of fluids in the fault zone. We observe that the Arabian Plate has underthrust the Eurasian Plate as far as the northern boundary of the Bitlis Massif, which can explain the high exhumation rates in the Bitlis Massif as a result of slab break-off of the Arabian oceanic lithosphere. We also find a shallow ( 33 km) anomaly beneath eastern Turkey that we interpret as a localized wedge of mantle that was underthrust by a crustal fragment during the collision of Arabia and Eurasia. These observations are possible because of the high-resolution images obtained by combining common conversion point receiver function stacks with ambient noise dispersion data to create a data-driven three-dimensional shear wave velocity model.

  11. A Distributed Fiber Optic Sensor Network for Online 3-D Temperature and Neutron Fluence Mapping in a VHTR Environment

    SciTech Connect

    Tsvetkov, Pavel; Dickerson, Bryan; French, Joseph; McEachern, Donald; Ougouag, Abderrafi

    2014-04-30

    Robust sensing technologies allowing for 3D in-core performance monitoring in real time are of paramount importance for already established LWRs to enhance their reliability and availability per year, and therefore, to further facilitate their economic competitiveness via predictive assessment of the in-core conditions.

  12. Chest wall segmentation in automated 3D breast ultrasound using rib shadow enhancement and multi-plane cumulative probability enhanced map

    NASA Astrophysics Data System (ADS)

    Kim, Hyeonjin; Kim, Hannah; Hong, Helen

    2015-03-01

    We propose an automatic segmentation method of chest wall in 3D ABUS images using rib shadow enhancement and multi-planar cumulative probability enhanced map. For the identification of individual dark rib shadows, each rib shadow is enhanced using intensity transfer function and 3D sheet-like enhancement filtering. Then, wrongly enhanced intercostal regions and small fatty tissues are removed using coronal and sagittal cumulative probability enhanced maps. The large fatty tissues with globular and sheet-like shapes at the top of rib shadow are removed using shape and orientation analysis based on moment matrix. Detected chest walls are connected with cubic B-spline interpolation. Experimental results show that the Dice similarity coefficient of proposed method as comparison with two manually outlining results provides over 90% in average.

  13. 3D Elevation Program—Virtual USA in 3D

    USGS Publications Warehouse

    Lukas, Vicki; Stoker, J.M.

    2016-04-14

    The U.S. Geological Survey (USGS) 3D Elevation Program (3DEP) uses a laser system called ‘lidar’ (light detection and ranging) to create a virtual reality map of the Nation that is very accurate. 3D maps have many uses with new uses being discovered all the time.  

  14. Ice Velocity Mapping in Antarctica - Towards a Virtual Satellite Constellation

    NASA Astrophysics Data System (ADS)

    Scheuchl, B.; Mouginot, J.; Rignot, E. J.; Crevier, Y.

    2013-12-01

    Ice sheets are acknowledged by the World Meteorological Organization (WMO) and the United Nations Framework Convention on Climate Change (UNFCCC) as an Essential Climate Variable (ECV) needed to make significant progress in the generation of global climate products and derived information. Ice velocity is a crucial geophysical parameter that can be measured using spaceborne Synthetic Aperture Radar (SAR) data. Here, we report on an update to available Earth System Data Records (ESDR) of ice velocity in Antarctica based on data from a suite of spaceborne (SAR) sensors and provide an overview on international coordination in an effort to best utilize the available SAR satellites. Building on the first complete mapping of the flow of ice surface over the Antarctic continent using data predominantly acquired during IPY, we are working on a series of regional studies analyzing data from several different epochs. The analysis of velocity changes between discrete measurements requires even more careful data processing in order to be able to accurately measure subtle changes. Examples for Larsen-C and the Amundsen Sea Embayment will be presented. Data continuity is a crucial aspect to this work, particularly in light of the fact that 4 SAR missions have ceased operations since IPY and all available missions have a primary mandate that is not scientific data collection. Following the successful internationally coordinated SAR data acquisitions over ice sheets during the International Polar Year 2007/2008, efforts are undertaken to continue data acquisitions in the spirit of collaboration. The Polar Space Task Group (PSTG) is succeeding the IPY coordinating body of international space agencies, Space Task Group (STG). The PSTG SAR Coordination Working Group was created to address the issue of SAR data acquisitions in the cryosphere. A review of ice sheet requirements was undertaken by the science community, presented to PSTG, and followed up with a set of sensor specific

  15. A methodology to accurately quantify patellofemoral cartilage contact kinematics by combining 3D image shape registration and cine-PC MRI velocity data.

    PubMed

    Borotikar, Bhushan S; Sipprell, William H; Wible, Emily E; Sheehan, Frances T

    2012-04-05

    Patellofemoral osteoarthritis and its potential precursor patellofemoral pain syndrome (PFPS) are common, costly, and debilitating diseases. PFPS has been shown to be associated with altered patellofemoral joint mechanics; however, an actual variation in joint contact stresses has not been established due to challenges in accurately quantifying in vivo contact kinematics (area and location). This study developed and validated a method for tracking dynamic, in vivo cartilage contact kinematics by combining three magnetic resonance imaging (MRI) techniques, cine-phase contrast (CPC), multi-plane cine (MPC), and 3D high-resolution static imaging. CPC and MPC data were acquired from 12 healthy volunteers while they actively extended/flexed their knee within the MRI scanner. Since no gold standard exists for the quantification of in vivo dynamic cartilage contact kinematics, the accuracy of tracking a single point (patellar origin relative to the femur) represented the accuracy of tracking the kinematics of an entire surface. The accuracy was determined by the average absolute error between the PF kinematics derived through registration of MPC images to a static model and those derived through integration of the CPC velocity data. The accuracy ranged from 0.47 mm to 0.77 mm for the patella and femur and from 0.68 mm to 0.86 mm for the patellofemoral joint. For purely quantifying joint kinematics, CPC remains an analytically simpler and more accurate (accuracy <0.33 mm) technique. However, for application requiring the tracking of an entire surface, such as quantifying cartilage contact kinematics, this combined imaging approach produces accurate results with minimal operator intervention.

  16. Noo Peroxy Isomer Exposed with Velocity-Map Imaging

    NASA Astrophysics Data System (ADS)

    Laws, Benjamin A.; Cavanagh, Steven J.; Lewis, Brenton R.; Gibson, Stephen T.

    2016-06-01

    O2, a toxic gas formed in most combustion processes, plays an important role in the Earth's atmosphere due to its role in the production of both photochemical smog and tropospheric ozone. The existence of the peroxy radial, NOO, has been proposed, both as a collision reaction intermediate, and as a negative-ion in some discharge sources, in order to account for extended tails seen in some photoelectron spectra. In this work a velocity-mapped image of NO2- photodetachment measured at 519 nm, shown, reveals high-energy electron structure, that persists at detachment energies lower than the electron affinity of ONO, 2.273 eV. {b} The central ring has the spectral signature of O^-, while the outer-ripples, that appear in character to be similar to NO- detachment, are, we propose due to the NOO- peroxy radical, which is also responsible for the presence of O-. The photoelectron spectrum resolves the vibrational structure to characterize the neutral peroxy radical. The identification is further supported by ab initio calculations. The photoelectron angular distributions associated with the peroxy radical have a negative anisotropy parameter, opposite in sign to detachment from ONO^-. K. M. Ervin and J. Ho and W. C. Lineberger, J. Phys. Chem. 92, 5405 (1988). doi:10.1021/j100330a017 Research supported by the ARC DP160102585.

  17. Development of Integrated 3D Terrain Maps for Unmanned Aerial Vehicle (UAV) Flight and Mission Control Support System (FMCSS)

    DTIC Science & Technology

    2006-03-01

    Direction Finding Payload DTAD Digital Terrain Analysis Data DTED Digital Terrain Elevation Data DTM Digital Terrain Model DVD Digital Video Disk...Environment Research Network (TERN), Silver Fox, Swift, Pointer , Raven, and Dragon Eye. The Hunter and the Shadow, by contrast, are larger and are usually...Available on DVD and on- line Library University of California, Berkley Library access based http://www.maps2any where.com/Maps/map s_index.htm Over

  18. Venus in 3D

    NASA Technical Reports Server (NTRS)

    Plaut, Jeffrey J.

    1993-01-01

    Stereographic images of the surface of Venus which enable geologists to reconstruct the details of the planet's evolution are discussed. The 120-meter resolution of these 3D images make it possible to construct digital topographic maps from which precise measurements can be made of the heights, depths, slopes, and volumes of geologic structures.

  19. Web-based 3D digital pathology framework for large-mapping data scanned by FF-OCT

    NASA Astrophysics Data System (ADS)

    Chang, ChiaKai; Tsai, Chien-Chung; Chien, Meng-Ting; Li, Yu-I.; Shun, Chia-Tung; Huang, Sheng-Lung

    2015-03-01

    Full-Field Optical Coherence Tomography (FF-OCT) is a high resolution instrument in 3 dimensional (3D) space, including lateral and longitudinal direction. With FF-OCT, we can perform 3D scanning for excised biopsy or cell culture sample to obtain cellular information. In this work, we have set up a high resolution FF-OCT scanning instrument that can perform cellular resolution tomography scanning of skin tissue for histopathology study. In a scan range of 1cm(x), 1cm(y), 106μm(z), for example, digital data occupies 253 GB capacity. Copying these materials is time consuming, not to mention efficient browsing and analyzing of these data. To solve the problem of information delivery, we have established a network service to browse and analyze the huge volume data.

  20. 3D Mapping of plasma effective areas via detection of cancer cell damage induced by atmospheric pressure plasma jets

    NASA Astrophysics Data System (ADS)

    Han, Xu; Liu, Yueing; Stack, M. Sharon; Ptasinska, Sylwia

    2014-12-01

    In the present study, a nitrogen atmospheric pressure plasma jet (APPJ) was used for irradiation of oral cancer cells. Since cancer cells are very susceptible to plasma treatment, they can be used as a tool for detection of APPJ-effective areas, which extended much further than the visible part of the APPJ. An immunofluorescence assay was used for DNA damage identification, visualization and quantification. Thus, the effective damage area and damage level were determined and plotted as 3D images.

  1. Arctic Research Mapping Application 3D Geobrowser: Accessing and Displaying Arctic Information From the Desktop to the Web

    NASA Astrophysics Data System (ADS)

    Johnson, G. W.; Gonzalez, J.; Brady, J. J.; Gaylord, A.; Manley, W. F.; Cody, R.; Dover, M.; Score, R.; Garcia-Lavigne, D.; Tweedie, C. E.

    2009-12-01

    ARMAP 3D allows users to dynamically interact with information about U.S. federally funded research projects in the Arctic. This virtual globe allows users to explore data maintained in the Arctic Research & Logistics Support System (ARLSS) database providing a very valuable visual tool for science management and logistical planning, ascertaining who is doing what type of research and where. Users can “fly to” study sites, view receding glaciers in 3D and access linked reports about specific projects. Custom “Search” tasks have been developed to query by researcher name, discipline, funding program, place names and year and display results on the globe with links to detailed reports. ARMAP 3D was created with ESRI’s free ArcGIS Explorer (AGX) new build 900 providing an updated application from build 500. AGX applications provide users the ability to integrate their own spatial data on various data layers provided by ArcOnline (http://resources.esri.com/arcgisonlineservices). Users can add many types of data including OGC web services without any special data translators or costly software. ARMAP 3D is part of the ARMAP suite (http://armap.org), a collection of applications that support Arctic science tools for users of various levels of technical ability to explore information about field-based research in the Arctic. ARMAP is funded by the National Science Foundation Office of Polar Programs Arctic Sciences Division and is a collaborative development effort between the Systems Ecology Lab at the University of Texas at El Paso, Nuna Technologies, the INSTAAR QGIS Laboratory, and CH2M HILL Polar Services.

  2. System and method for investigating sub-surface features and 3D imaging of non-linear property, compressional velocity VP, shear velocity VS and velocity ratio VP/VS of a rock formation

    DOEpatents

    Vu, Cung Khac; Skelt, Christopher; Nihei, Kurt; Johnson, Paul A.; Guyer, Robert; Ten Cate, James A.; Le Bas, Pierre-Yves; Larmat, Carene S.

    2015-06-02

    A system and a method for generating a three-dimensional image of a rock formation, compressional velocity VP, shear velocity VS and velocity ratio VP/VS of a rock formation are provided. A first acoustic signal includes a first plurality of pulses. A second acoustic signal from a second source includes a second plurality of pulses. A detected signal returning to the borehole includes a signal generated by a non-linear mixing process from the first and second acoustic signals in a non-linear mixing zone within an intersection volume. The received signal is processed to extract the signal over noise and/or signals resulting from linear interaction and the three dimensional image of is generated.

  3. Exoplanet Atmospheres in High Definition: 3D Eclipse Mapping of HD 209458b and HD 189733b

    NASA Astrophysics Data System (ADS)

    Lewis, Nikole; Cowan, Nicolas; Knutson, Heather; de Wit, Julien; Seager, Sara; Demory, Brice-Olivier; Fortney, Jonathan; Showman, Adam

    2013-10-01

    Eclipse mapping is a newly developed technique in the arsenal of observational methods aimed at the characterization of exoplanet atmospheres. This technique was first applied to HD189733b using multiple 8 micron secondary eclipse observations to create a high-resolution snapshot of the dayside of the planet. The eclipse map of HD189733b at 8 microns was able to resolve the dayside brightness distribution of the planet both in latitude and longitude giving key insights into the atmospheric circulation of HD189733b. Here we propose to use this eclipse mapping technique to produce dayside brightness maps of the benchmark exoplanets HD189733b and HD209458b at both 3.6 and 4.5 microns. By combining brightness maps at multiple wavelengths, we will create the first three-dimensional maps of an exoplanet atmosphere (latitude, longitude, and pressure). HD209458 and HD189733 are among the brightest (Ks~6) planet harboring system and represent our best opportunity to achieve a high signal-to-noise eclipse maps. Comparisons between the brightness maps of these two planets will highlight key differences in the atmospheric circulation patterns of planets with (HD209458b) and without (HD189733b) thermal inversions in their dayside atmospheres. The atmospheres of HD189733b and HD209458b have been previously probed at wavelengths from the infrared to the ultraviolet through transit, eclipse, and phase-curve observations. With the addition of the three-dimensional eclipse maps proposed here, we will answer many of the outstanding questions about the basic radiative, chemical, and advective processes at work in these key planetary atmospheres. The observations proposed here will allow us to make the first direct comparisons of the observed thermal structure of an exoplanet with the plethora of three-dimensional atmospheric circulation models developed specifically for HD189733b and HD209458b, thus both informing the models and gaining new insights into the complex circulation

  4. MRI technique for the snapshot imaging of quantitative velocity maps using RARE

    NASA Astrophysics Data System (ADS)

    Shiko, G.; Sederman, A. J.; Gladden, L. F.

    2012-03-01

    A quantitative PGSE-RARE pulse sequence was developed and successfully applied to the in situ dissolution of two pharmaceutical formulations dissolving over a range of timescales. The new technique was chosen over other existing fast velocity imaging techniques because it is T2 weighted, not T2∗ weighted, and is, therefore, robust for imaging time-varying interfaces and flow in magnetically heterogeneous systems. The complex signal was preserved intact by separating odd and even echoes to obtain two phase maps which are then averaged in post-processing. Initially, the validity of the technique was shown when imaging laminar flow in a pipe. Subsequently, the dissolution of two drugs was followed in situ, where the technique enables the imaging and quantification of changes in the form of the tablet and the flow field surrounding it at high spatial and temporal resolution. First, the complete 3D velocity field around an eroding salicylic acid tablet was acquired at a resolution of 98 × 49 μm2, within 20 min, and monitored over ˜13 h. The tablet was observed to experience a heterogeneous flow field and, hence a heterogeneous shear field, which resulted in the non-symmetric erosion of the tablet. Second, the dissolution of a fast dissolving immediate release tablet was followed using one-shot 2D velocity images acquired every 5.2 s at a resolution of 390 × 390 μm2. The quantitative nature of the technique and fast acquisition times provided invaluable information on the dissolution behaviour of this tablet, which had not been attainable previously with conventional quantitative MRI techniques.

  5. Corrigendum to "The 3-D strain patterns in Turkey using geodetic velocity fields from the RTK-CORS (TR) network" [J. African Earth Sci. 115 (2016) 246-270

    NASA Astrophysics Data System (ADS)

    Kutoglu, Hakan Senol; Toker, Mustafa; Mekik, Cetin

    2016-12-01

    In the article titled "The 3-D Strain patterns in Turkey using Geodetic velocity fields from the RTK-CORS (TR) Network" published in Journal of African Earth Sciences Vol. 11, pp.246-270, the black arrows on the Figs. 10 and 12 are shifted due to printing error to undesired places. The correct form of Figs. 10 and 12 are given below:

  6. Feasibility of CT-based 3D anatomic mapping with a scanning-beam digital x-ray (SBDX) system

    NASA Astrophysics Data System (ADS)

    Slagowski, Jordan M.; Tomkowiak, Michael T.; Dunkerley, David A. P.; Speidel, Michael A.

    2015-03-01

    This study investigates the feasibility of obtaining CT-derived 3D surfaces from data provided by the scanning-beam digital x-ray (SBDX) system. Simulated SBDX short-scan acquisitions of a Shepp-Logan and a thorax phantom containing a high contrast spherical volume were generated. 3D reconstructions were performed using a penalized weighted least squares method with total variation regularization (PWLS-TV), as well as a more efficient variant employing gridding of projection data to parallel rays (gPWLS-TV). Voxel noise, edge blurring, and surface accuracy were compared to gridded filtered back projection (gFBP). PWLS reconstruction of a noise-free reduced-size Shepp-Logan phantom had 1.4% rRMSE. In noisy gPWLS-TV reconstructions of a reduced-size thorax phantom, 99% of points on the segmented sphere perimeter were within 0.33, 0.47, and 0.70 mm of the ground truth, respectively, for fluences comparable to imaging through 18.0, 27.2, and 34.6 cm acrylic. Surface accuracies of gFBP and gPWLS-TV were similar at high fluences, while gPWLS-TV offered improvement at the lowest fluence. The gPWLS-TV voxel noise was reduced by 60% relative to gFBP, on average. High-contrast linespread functions measured 1.25 mm and 0.96 mm (FWHM) for gPWLS-TV and gFBP. In a simulation of gated and truncated projection data from a full-sized thorax, gPWLS-TV reconstruction yielded segmented surface points which were within 1.41 mm of ground truth. Results support the feasibility of 3D surface segmentation with SBDX. Further investigation of artifacts caused by data truncation and patient motion is warranted.

  7. Feasibility of CT-based 3D anatomic mapping with a scanning-beam digital x-ray (SBDX) system.

    PubMed

    Slagowski, Jordan M; Tomkowiak, Michael T; Dunkerley, David A P; Speidel, Michael A

    This study investigates the feasibility of obtaining CT-derived 3D surfaces from data provided by the scanning-beam digital x-ray (SBDX) system. Simulated SBDX short-scan acquisitions of a Shepp-Logan and a thorax phantom containing a high contrast spherical volume were generated. 3D reconstructions were performed using a penalized weighted least squares method with total variation regularization (PWLS-TV), as well as a more efficient variant employing gridding of projection data to parallel rays (gPWLS-TV). Voxel noise, edge blurring, and surface accuracy were compared to gridded filtered back projection (gFBP). PWLS reconstruction of a noise-free reduced-size Shepp-Logan phantom had 1.4% rRMSE. In noisy gPWLS-TV reconstructions of a reduced-size thorax phantom, 99% of points on the segmented sphere perimeter were within 0.33, 0.47, and 0.70 mm of the ground truth, respectively, for fluences comparable to imaging through 18.0, 27.2, and 34.6 cm acrylic. Surface accuracies of gFBP and gPWLS-TV were similar at high fluences, while gPWLS-TV offered improvement at the lowest fluence. The gPWLS-TV voxel noise was reduced by 60% relative to gFBP, on average. High-contrast linespread functions measured 1.25 mm and 0.96 mm (FWHM) for gPWLS-TV and gFBP. In a simulation of gated and truncated projection data from a full-sized thorax, gPWLS-TV reconstruction yielded segmented surface points which were within 1.41 mm of ground truth. Results support the feasibility of 3D surface segmentation with SBDX. Further investigation of artifacts caused by data truncation and patient motion is warranted.

  8. Mapping the Complement Factor H-Related Protein 1 (CFHR1):C3b/C3d Interactions

    PubMed Central

    Laskowski, Jennifer; Thurman, Joshua M.; Hageman, Gregory S.; Holers, V. Michael

    2016-01-01

    Complement factor H-related protein 1 (CFHR1) is a complement regulator which has been reported to regulate complement by blocking C5 convertase activity and interfering with C5b surface association. CFHR1 also competes with complement factor H (CFH) for binding to C3b, and may act as an antagonist of CFH-directed regulation on cell surfaces. We have employed site-directed mutagenesis in conjunction with ELISA-based and functional assays to isolate the binding interaction that CFHR1 undertakes with complement components C3b and C3d to a single shared interface. The C3b/C3d:CFHR1 interface is identical to that which occurs between the two C-terminal domains (SCR19-20) of CFH and C3b. Moreover, we have been able to corroborate that dimerization of CFHR1 is necessary for this molecule to bind effectively to C3b and C3d, or compete with CFH. Finally, we have established that CFHR1 competes with complement factor H-like protein 1 (CFHL-1) for binding to C3b. CFHL-1 is a CFH gene splice variant, which is almost identical to the N-terminal 7 domains of CFH (SCR1-7). CFHR1, therefore, not only competes with the C-terminus of CFH for binding to C3b, but also sterically blocks the interaction that the N-terminus of CFH undertakes with C3b, and which is required for CFH-regulation. PMID:27814381

  9. Molecular Strong Field Ionization viewed with Photoelectron Velocity Map Imaging

    NASA Astrophysics Data System (ADS)

    Sandor, Peter

    In this thesis, work is presented on molecular strong-field ionization, during which an electron is removed from polyatomic molecules in the presence of strong laser fields. This is a process which is the basis of a number of experimental techniques to uncover electronic dynamics in atoms and molecules on the femtosecond and attosecond timescale. 'Strong' refers to an electric field strength which leads to a response from the system which can not be modeled perturbatively. These fields can be easily produced in the focus of femtosecond laser radiation, as is done in this work. With the use of velocity map imaging of the photoelectron in coincidence with the fragment ion, multiple ionization--dissociation pathways can be distinguished. It is shown that as opposed to early attempts to model the process, multiple low-lying states are populated in the ion, and also the signatures of multielectron dynamics are revealed. By changing the laser pulse duration from 30 fs to below 10 fs, control is demonstrated over which quantum states of the ion are populated. It is also shown that for pulses shorter than 10 fs (which is a timescale below the shortest vibrational period in molecules), ionization pathways that involve motion of the nuclei are almost completely shut off. Finally, the origin of electrons with <1 meV kinetic energy is discussed. A two-step model is proposed for creating the electrons: the first step is population transfer to high-lying excited states of the neutral molecule by the laser field; the second step is ionization. Different ionization mechanisms are examined and their viability is checked against available data.

  10. Photodissociation dynamics of 2-bromopropane using velocity map imaging technique.

    PubMed

    Zhu, Rongshu; Tang, Bifeng; Zhang, Xiu; Zhang, Bing

    2010-06-03

    Photodissociation dynamics of 2-bromopropane in the A band was investigated at several wavelengths between 232 and 267 nm using resonance-enhanced multiphoton ionization technique combined with velocity map ion-imaging detection. The ion images of Br ((2)P(3/2)) and Br* ((2)P(1/2)) were analyzed to yield corresponding total translational energy and angular distributions. The total translational energy distributions showed that the channel leading to Br carried more internal energy in the 2-C(3)H(7) moiety than the channel leading to Br*. The anisotropy parameters of beta (Br) were obtained to be between 0.68 and 1.49, and beta (Br*) between 0.73 and 1.96, indicating that the Br* product originates from direct excitation of the (3)Q(0) state and the (1)Q(1) --> (3)Q(0) nonadiabatic transition, and the Br product from direct excitation of the (1)Q(1) or (3)Q(1) state and the (3)Q(0) --> (1)Q(1) nonadiabatic transition. The curve crossing probabilities were determined to be increase with the wavelength. As compared with the case of CH(3)Br, the two heavier branched CH(3) groups significantly enhance the Br ((2)P(3/2)) production from nonadiabatic contribution. The curve crossing from the (3)Q(0) to the (1)Q(1) surface is much higher than that of the reverse from the (1)Q(1) to the (3)Q(0) surface, which may have resulted from the difference in shape between the potential energy surfaces of the (3)Q(0) and (1)Q(1) states. Finally, based on the experimental data, the partial absorption cross sections of the A band for the (3)Q(0), (3)Q(1), and (1)Q(1) states were extracted.

  11. Multiple Baseline SAR Tomography's Performance Analysis in Forest 3-D Structure Mapping with long term ALOS L band repeat pass InSAR data

    NASA Astrophysics Data System (ADS)

    Lin, Q.; Zebker, H. A.

    2013-12-01

    Acquiring accurate measurement of three-dimensional structure of forest globally , is key to improve quantitative understanding of the state and dynamics of ecosystems, particularly global carbon cycle. Moreover, forest contains a large portion of Earth's renewable natural resources. All these require an accurate, timely and cost-effective global forest vertical structure mapping. Synthetic Aperture Radar Interferometry (InSAR) remote sensing is widely acknowledged as a powerful tool to accomplish this task. Within the last decade, a number of experimental demonstrations of 3-D InSAR techniques have suggested the possibility of remotely sensing global 3-D vegetation structure. Among all the 3-D InSAR techniques, Multiple Baseline SAR Tomography( MB Tomo-SAR) is a very promising one. Multiple baseline SAR tomography exploits InSAR images acquired from different baselines and form a synthetic aperture in the vertical direction in order to retrieval vertical structure. Though theoretical predictions and several laboratory experiments show great reconstruction results, applying the method in real world condition still face a lot of challenges, including low acquisition number, irregular sample distribution, atmospheric phase noise and time decorrelation effect. In this article, we use L band ALOS spaceborne SAR data in Hawaii area to test the performance of MB TomoSAR . In the process, advanced Fourier beamforming method, atmospheric phase screen removal algorithm and time decorrelation effect are all applied. In addition, we also utilize the Landsat vegetation index and the result with other 3-D reconstruction methods as comparison to validate its performance.

  12. Imaging Magma Under St. Helens (iMUSH): Details of passive-source seismic deployment and preliminary 3-D velocity structure

    NASA Astrophysics Data System (ADS)

    Ulberg, C. W.; Creager, K. C.; Moran, S. C.; Abers, G. A.; Denlinger, R. P.; Hotovec-Ellis, A. J.; Vidale, J. E.; Kiser, E.; Levander, A.; Schultz, A.

    2014-12-01

    The imaging Magma Under St. Helens (iMUSH) experiment aims to delineate the extent of the magmatic system beneath Mount St. Helens (MSH) in Washington State. The experiment involves active- and passive-source seismology, magnetotellurics, and geochemistry/petrology. Seventy passive-source broadband seismometers were deployed in a 100-km-diameter array centered on MSH, with an average spacing of 10 km, and a planned duration of two years. The deployment over two weeks in June 2014 involved a group of 18 people split into 6 teams. Approximately half of the seismic stations have aircell batteries and/or pole-mounted solar panels in order to maintain power through deep snow at higher elevations during the winter months. Data will be retrieved 2-4 times a year throughout the duration of the experiment. The first service run performed in mid-July 2014 had a 98.4% data recovery. This is one of the largest wide-aperture two-dimensional arrays covering a volcano anywhere. The active-source portion of the experiment successfully set off 23 shots in late-July 2014. These were recorded clearly at permanent stations run by the Pacific Northwest Seismic Network up to 200 km away, and are expected to be well-recorded on many of the 70 broadband seismometers in addition to the 2500 Reftek "Texans" deployed temporarily for this purpose. For the 2-4 weeks of broadband data collected in July, local earthquakes down to magnitude 0 are recorded across the array, with clear P- and S- arrivals. Earthquakes of this size occur daily within 50 km of MSH. We are keeping a careful catalog of all activity in the region for the duration of the iMUSH experiment. We will pick P- and S-wave travel times at the 70 broadband stations from local earthquakes and active shots, for available data from between June and October 2014. We will also use a tomographic code (Preston et al, 2003, Science) to invert the travel times to obtain preliminary earthquake location and 3-D velocity structure.

  13. Denosumab rapidly increases cortical bone in key locations of the femur: a 3D bone mapping study in women with osteoporosis.

    PubMed

    Poole, Kenneth E S; Treece, Graham M; Gee, Andrew H; Brown, Jacques P; McClung, Michael R; Wang, Andrea; Libanati, Cesar

    2015-01-01

    Women with osteoporosis treated for 36 months with twice-yearly injections of denosumab sustained fewer hip fractures compared with placebo. Treatment might improve femoral bone at locations where fractures typically occur. To test this hypothesis, we used 3D cortical bone mapping of postmenopausal women with osteoporosis to investigate the timing and precise location of denosumab versus placebo effects in the hips. We analyzed clinical computed tomography scans from 80 female participants in FREEDOM, a randomized trial, wherein half of the study participants received subcutaneous denosumab 60 mg twice yearly and the others received placebo. Cortical 3D bone thickness maps of both hips were created from scans at baseline, 12, 24, and 36 months. Cortical mass surface density maps were also created for each visit. After registration of each bone to an average femur shape model followed by statistical parametric mapping, we visualized and quantified statistically significant treatment effects. The technique allowed us to pinpoint systematic differences between denosumab and control and to display the results on a 3D average femur model. Denosumab treatment led to an increase in femoral cortical mass surface density and thickness, already evident by the third injection (12 months). Overall, treatment with denosumab increased femoral cortical mass surface density by 5.4% over 3 years. One-third of the increase came from increasing cortical density, and two-thirds from increasing cortical thickness, relative to placebo. After 36 months, cortical mass surface density and thickness had increased by up to 12% at key locations such as the lateral femoral trochanter versus placebo. Most of the femoral cortex displayed a statistically significant relative difference by 36 months. Osteoporotic cortical bone responds rapidly to denosumab therapy, particularly in the hip trochanteric region. This mechanism may be involved in the robust decrease in hip fractures observed in

  14. Quantification of ultrasound correlation-based flow velocity mapping and edge velocity gradient measurement.

    PubMed

    Park, Dae Woo; Kruger, Grant H; Rubin, Jonathan M; Hamilton, James; Gottschalk, Paul; Dodde, Robert E; Shih, Albert J; Weitzel, William F

    2013-10-01

    This study investigated the use of ultrasound speckle decorrelation- and correlation-based lateral speckle-tracking methods for transverse and longitudinal blood velocity profile measurement, respectively. By studying the blood velocity gradient at the vessel wall, vascular wall shear stress, which is important in vascular physiology as well as the pathophysiologic mechanisms of vascular diseases, can be obtained. Decorrelation-based blood velocity profile measurement transverse to the flow direction is a novel approach, which provides advantages for vascular wall shear stress measurement over longitudinal blood velocity measurement methods. Blood flow velocity profiles are obtained from measurements of frame-to-frame decorrelation. In this research, both decorrelation and lateral speckle-tracking flow estimation methods were compared with Poiseuille theory over physiologic flows ranging from 50 to 1000 mm/s. The decorrelation flow velocity measurement method demonstrated more accurate prediction of the flow velocity gradient at the wall edge than the correlation-based lateral speckle-tracking method. The novelty of this study is that speckle decorrelation-based flow velocity measurements determine the blood velocity across a vessel. In addition, speckle decorrelation-based flow velocity measurements have higher axial spatial resolution than Doppler ultrasound measurements to enable more accurate measurement of blood velocity near a vessel wall and determine the physiologically important wall shear.

  15. About Non-Line-Of-Sight Satellite Detection and Exclusion in a 3D Map-Aided Localization Algorithm

    PubMed Central

    Peyraud, Sébastien; Bétaille, David; Renault, Stéphane; Ortiz, Miguel; Mougel, Florian; Meizel, Dominique; Peyret, François

    2013-01-01

    Reliable GPS positioning in city environment is a key issue actually, signals are prone to multipath, with poor satellite geometry in many streets. Using a 3D urban model to forecast satellite visibility in urban contexts in order to improve GPS localization is the main topic of the present article. A virtual image processing that detects and eliminates possible faulty measurements is the core of this method. This image is generated using the position estimated a priori by the navigation process itself, under road constraints. This position is then updated by measurements to line-of-sight satellites only. This closed-loop real-time processing has shown very first promising full-scale test results. PMID:23344379

  16. Mapping of the C3d ligand binding site on complement receptor 2 (CR2/CD21) using nuclear magnetic resonance and chemical shift analysis.

    PubMed

    Kovacs, James M; Hannan, Jonathan P; Eisenmesser, Elan Z; Holers, V Michael

    2009-04-03

    Complement receptor 2 (CR2, CD21) is a cell membrane protein, with 15 or 16 extracellular short consensus repeats (SCRs), that promotes B lymphocyte responses and bridges innate and acquired immunity. The most distally located SCRs (SCR1-2) mediate the interaction of CR2 with its four known ligands (C3d, Epstein-Barr virus gp350, interferon-alpha, and CD23). Inhibitory monoclonal antibodies against SCR1-2 block binding of all ligands. To develop ligand-specific inhibitors that would also assist in identifying residues unique to each receptor-ligand interaction, phage were selected from randomly generated libraries by panning with recombinant SCR1-2, followed by specific ligand-driven elution. Derived peptides were tested by competition ELISA. One peptide, C3dp1 (APQHLSSQYSRT) exhibited ligand-specific inhibition at midmicromolar IC(50). C3d was titrated into (15)N-labeled SCR1-2, which revealed chemical shift changes indicative of specific intermolecular interactions. With backbone assignments made, the chemical shift changes were mapped onto the crystal structure of SCR1-2. With regard to C3d, the binding surface includes regions of SCR1, SCR2, and the inter-SCR linker, specifically residues Arg(13), Tyr(16), Arg(28), Tyr(29), Ser(32), Thr(34), Lys(48), Asp(56), Lys(57), Tyr(68), Arg(83), Gly(84), Asn(101), Asn(105), and Ser(109). SCR1 and SCR2 demonstrated distinct binding modes. The CR2 binding surface incorporating SCR1 is inconsistent with a previous x-ray CR2-C3d co-crystal analysis but consistent with mutagenesis, x-ray neutron scattering, and inhibitory monoclonal antibody epitope mapping. Titration with C3dp1 yielded chemical shift changes (Arg(13), Tyr(16), Thr(34), Lys(48), Asp(56), Lys(57), Tyr(68), Arg(83), Gly(84), Asn(105), and Ser(109)) overlapping with C3d, indicating that C3dp1 interacts at the same CR2 site as C3d.

  17. Automated Quantification of DNA Demethylation Effects in Cells via 3D Mapping of Nuclear Signatures and Population Homogeneity Assessment1

    PubMed Central

    Gertych, Arkadiusz; Wawrowsky, Kolja A.; Lindsley, Erik; Vishnevsky, Eugene; Farkas, Daniel L.; Tajbakhsh, Jian

    2009-01-01

    Background Today’s advanced microscopic imaging applies to the preclinical stages of drug discovery that employ high-throughput and high-content three-dimensional (3D) analysis of cells to more efficiently screen candidate compounds. Drug efficacy can be assessed by measuring response homogeneity to treatment within a cell population. In this study topologically quantified nuclear patterns of methylated cytosine and global nuclear DNA are utilized as signatures of cellular response to the treatment of cultured cells with the demethylating anti-cancer agents: 5-azacytidine (5-AZA) and octreotide (OCT). Methods Mouse pituitary folliculostellate TtT-GF cells treated with 5-AZA and OCT for 48 hours, and untreated populations, were studied by immunofluorescence with a specific antibody against 5-methylcytosine (MeC), and 4,6-diamidino-2-phenylindole (DAPI) for delineation of methylated sites and global DNA in nuclei (n=163). Cell images were processed utilizing an automated 3D analysis software that we developed by combining seeded watershed segmentation to extract nuclear shells with measurements of Kullback-Leibler’s (K-L) divergence to analyze cell population homogeneity in the relative nuclear distribution patterns of MeC versus DAPI stained sites. Each cell was assigned to one of the four classes: similar, likely similar, unlikely similar and dissimilar. Results Evaluation of the different cell groups revealed a significantly higher number of cells with similar or likely similar MeC/DAPI patterns among untreated cells (~100%), 5-AZA-treated cells (90%), and a lower degree of same type of cells (64%) in the OCT-treated population. The latter group contained (28%) of unlikely similar or dissimilar (7%) cells. Conclusion Our approach was successful in the assessment of cellular behavior relevant to the biological impact of the applied drugs, i.e. the reorganization of MeC/DAPI distribution by demethylation. In a comparison with other metrics, K-L divergence has

  18. Study of the 3D Geometric Structure and Temperature of a Coronal Cavity Using the Limb Synoptic Map Method

    NASA Astrophysics Data System (ADS)

    Karna, N.; Zhang, J.; Pesnell, W. Dean; Hess Webber, S. A.

    2015-09-01

    We present the three-dimensional geometric structure and thermal properties of a coronal cavity deduced from limb synoptic maps. The observations are extreme ultraviolet images from the Atmospheric Imager Assembly (AIA) and magnetic images from the Helioseismic Magnetic Imager instruments on board the Solar Dynamics Observatory. We describe a limb synoptic-map method used to effectively identify and measure cavities from annuli of radiance above the solar limb. We find that cavities are best seen in the 211, 193, and 171 Å passbands. The prominence associated with each cavity is best seen in the 304 Å synoptic maps. We also estimate the thermal properties of the cavity and surrounding plasma by combining the AIA radiances with a differential emission measure analysis. This paper focuses on one long cavity from a catalog of coronal cavities that we are developing. Cavities in this catalog are designated by a coded name using the Carrington Rotation number and position. Cavity C211347177N was observed during Carrington Rotation 2113 at the northwestern limb of the solar disk with an average latitude of 47° N and a central longitude of 177°. We showed the following. (1) The cavity is a long tube with an elliptical cross-section with ratios of the length to width and the length to height of 11:1 and 7:1, respectively. (2) The cavity is about 1360 Mm long, or 170° in longitude. (3) It is tilted in latitude. (4) And it is slightly hotter than its surroundings.

  19. STUDY OF THE 3D GEOMETRIC STRUCTURE AND TEMPERATURE OF A CORONAL CAVITY USING THE LIMB SYNOPTIC MAP METHOD

    SciTech Connect

    Karna, N.; Pesnell, W. Dean; Webber, S. A. Hess; Zhang, J.

    2015-09-10

    We present the three-dimensional geometric structure and thermal properties of a coronal cavity deduced from limb synoptic maps. The observations are extreme ultraviolet images from the Atmospheric Imager Assembly (AIA) and magnetic images from the Helioseismic Magnetic Imager instruments on board the Solar Dynamics Observatory. We describe a limb synoptic-map method used to effectively identify and measure cavities from annuli of radiance above the solar limb. We find that cavities are best seen in the 211, 193, and 171 Å passbands. The prominence associated with each cavity is best seen in the 304 Å synoptic maps. We also estimate the thermal properties of the cavity and surrounding plasma by combining the AIA radiances with a differential emission measure analysis. This paper focuses on one long cavity from a catalog of coronal cavities that we are developing. Cavities in this catalog are designated by a coded name using the Carrington Rotation number and position. Cavity C211347177N was observed during Carrington Rotation 2113 at the northwestern limb of the solar disk with an average latitude of 47° N and a central longitude of 177°. We showed the following. (1) The cavity is a long tube with an elliptical cross-section with ratios of the length to width and the length to height of 11:1 and 7:1, respectively. (2) The cavity is about 1360 Mm long, or 170° in longitude. (3) It is tilted in latitude. (4) And it is slightly hotter than its surroundings.

  20. Simultaneous spatiotemporal mapping of in situ pH and bacterial activity within an intact 3D microcolony structure

    NASA Astrophysics Data System (ADS)

    Hwang, Geelsu; Liu, Yuan; Kim, Dongyeop; Sun, Victor; Aviles-Reyes, Alejandro; Kajfasz, Jessica K.; Lemos, Jose A.; Koo, Hyun

    2016-09-01

    Biofilms are comprised of bacterial-clusters (microcolonies) enmeshed in an extracellular matrix. Streptococcus mutans can produce exopolysaccharides (EPS)-matrix and assemble microcolonies with acidic microenvironments that can cause tooth-decay despite the surrounding neutral-pH found in oral cavity. How the matrix influences the pH and bacterial activity locally remains unclear. Here, we simultaneously analyzed in situ pH and gene expression within intact biofilms and measured the impact of damage to the surrounding EPS-matrix. The spatiotemporal changes of these properties were characterized at a single-microcolony level following incubation in neutral-pH buffer. The middle and bottom-regions as well as inner-section within the microcolony 3D structure were resistant to neutralization (vs. upper and peripheral-region), forming an acidic core. Concomitantly, we used a green fluorescent protein (GFP) reporter to monitor expression of the pH-responsive atpB (PatpB::gfp) by S. mutans within microcolonies. The atpB expression was induced in the acidic core, but sharply decreased at peripheral/upper microcolony regions, congruent with local pH microenvironment. Enzymatic digestion of the surrounding matrix resulted in nearly complete neutralization of microcolony interior and down-regulation of atpB. Altogether, our data reveal that biofilm matrix facilitates formation of an acidic core within microcolonies which in turn activates S. mutans acid-stress response, mediating both the local environment and bacterial activity in situ.

  1. Remote magnetic actuation of micrometric probes for in situ 3D mapping of bacterial biofilm physical properties.

    PubMed

    Galy, Olivier; Zrelli, Kais; Latour-Lambert, Patricia; Kirwan, Lyndsey; Henry, Nelly

    2014-05-02

    Bacterial adhesion and growth on interfaces lead to the formation of three-dimensional heterogeneous structures so-called biofilms. The cells dwelling in these structures are held together by physical interactions mediated by a network of extracellular polymeric substances. Bacterial biofilms impact many human activities and the understanding of their properties is crucial for a better control of their development - maintenance or eradication - depending on their adverse or beneficial outcome. This paper describes a novel methodology aiming to measure in situ the local physical properties of the biofilm that had been, until now, examined only from a macroscopic and homogeneous material perspective. The experiment described here involves introducing magnetic particles into a growing biofilm to seed local probes that can be remotely actuated without disturbing the structural properties of the biofilm. Dedicated magnetic tweezers were developed to exert a defined force on each particle embedded in the biofilm. The setup is mounted on the stage of a microscope to enable the recording of time-lapse images of the particle-pulling period. The particle trajectories are then extracted from the pulling sequence and the local viscoelastic parameters are derived from each particle displacement curve, thereby providing the 3D-spatial distribution of the parameters. Gaining insights into the biofilm mechanical profile is essential from an engineer's point of view for biofilm control purposes but also from a fundamental perspective to clarify the relationship between the architectural properties and the specific biology of these structures.

  2. Remote Magnetic Actuation of Micrometric Probes for in situ 3D Mapping of Bacterial Biofilm Physical Properties

    PubMed Central

    Galy, Olivier; Zrelli, Kais; Latour-Lambert, Patricia; Kirwan, Lyndsey; Henry, Nelly

    2014-01-01

    Bacterial adhesion and growth on interfaces lead to the formation of three-dimensional heterogeneous structures so-called biofilms. The cells dwelling in these structures are held together by physical interactions mediated by a network of extracellular polymeric substances. Bacterial biofilms impact many human activities and the understanding of their properties is crucial for a better control of their development — maintenance or eradication — depending on their adverse or beneficial outcome. This paper describes a novel methodology aiming to measure in situ the local physical properties of the biofilm that had been, until now, examined only from a macroscopic and homogeneous material perspective. The experiment described here involves introducing magnet