Science.gov

Sample records for 3d velocity mapping

  1. Magnetic resonance velocity mapping of 3D cerebrospinal fluid flow dynamics in hydrocephalus: preliminary results.

    PubMed

    Stadlbauer, Andreas; Salomonowitz, Erich; Brenneis, Christian; Ungersböck, Karl; van der Riet, Wilma; Buchfelder, Michael; Ganslandt, Oliver

    2012-01-01

    To investigate the detectability of CSF flow alterations in the ventricular system of patients with hydrocephalus using time-resolved 3D MR velocity mapping. MR velocity mapping was performed in 21 consecutive hydrocephalus patients and 21 age-matched volunteers using a 3D phase-contrast (PC) sequence. Velocity vectors and particle path lines were calculated for visualisation of flow dynamics. CSF flow was classified as "hypomotile flow" if it showed attenuated dynamics and as "hypermotile flow" if it showed increased dynamics compared with volunteers. Diagnostic efficacy was compared with routine 2D cine PC-MRI. Seven patients showed hypomotile CSF flow: six had non-communicating hydrocephalus due to aqueductal stenosis. One showed oscillating flow between the lateral ventricles after craniotomy for intracranial haemorrhage. Seven patients showed normal flow: six had hydrocephalus ex vacuo due to brain atrophy. One patient who underwent ventriculostomy 10 years ago showed a flow path through the opening. Seven patients showed hypermotile flow: three had normal pressure hydrocephalus, three had dementia, and in one the diagnosis remained unclear. The diagnostic efficacy of velocity mapping was significantly higher except for that of aqueductal stenosis. Our approach may be useful for diagnosis, therapy planning, and follow-up of different kinds of hydrocephalus.

  2. 3-D In Vitro Acoustic Super-Resolution and Super-Resolved Velocity Mapping Using Microbubbles.

    PubMed

    Christensen-Jeffries, Kirsten; Brown, Jemma; Aljabar, Paul; Tang, Mengxing; Dunsby, Christopher; Eckersley, Robert J

    2017-10-01

    Standard clinical ultrasound (US) imaging frequencies are unable to resolve microvascular structures due to the fundamental diffraction limit of US waves. Recent demonstrations of 2-D super-resolution both in vitro and in vivo have demonstrated that fine vascular structures can be visualized using acoustic single bubble localization. Visualization of more complex and disordered 3-D vasculature, such as that of a tumor, requires an acquisition strategy which can additionally localize bubbles in the elevational plane with high precision in order to generate super-resolution in all three dimensions. Furthermore, a particular challenge lies in the need to provide this level of visualization with minimal acquisition time. In this paper, we develop a fast, coherent US imaging tool for microbubble localization in 3-D using a pair of US transducers positioned at 90°. This allowed detection of point scatterer signals in 3-D with average precisions equal to [Formula: see text] in axial and elevational planes, and [Formula: see text] in the lateral plane, compared to the diffraction limited point spread function full-widths at half-maximum of 488, 1188, and [Formula: see text] of the original imaging system with a single transducer. Visualization and velocity mapping of 3-D in vitro structures was demonstrated far beyond the diffraction limit. The capability to measure the complete flow pattern of blood vessels associated with disease at depth would ultimately enable analysis of in vivo microvascular morphology, blood flow dynamics, and occlusions resulting from disease states.

  3. Direct 3D mapping of the Fermi surface and Fermi velocity

    NASA Astrophysics Data System (ADS)

    Medjanik, K.; Fedchenko, O.; Chernov, S.; Kutnyakhov, D.; Ellguth, M.; Oelsner, A.; Schönhense, B.; Peixoto, T. R. F.; Lutz, P.; Min, C.-H.; Reinert, F.; Däster, S.; Acremann, Y.; Viefhaus, J.; Wurth, W.; Elmers, H. J.; Schönhense, G.

    2017-06-01

    We performed a full mapping of the bulk electronic structure including the Fermi surface and Fermi-velocity distribution vF(kF) of tungsten. The 4D spectral function ρ(EB k) in the entire bulk Brillouin zone and 6 eV binding-energy (EB) interval was acquired in ~3 h thanks to a new multidimensional photoemission data-recording technique (combining full-field k-microscopy with time-of-flight parallel energy recording) and the high brilliance of the soft X-rays used. A direct comparison of bulk and surface spectral functions (taken at low photon energies) reveals a time-reversal-invariant surface state in a local bandgap in the (110)-projected bulk band structure. The surface state connects hole and electron pockets that would otherwise be separated by an indirect local bandgap. We confirmed its Dirac-like spin texture by spin-filtered momentum imaging. The measured 4D data array enables extraction of the 3D dispersion of all bands, all energy isosurfaces, electron velocities, hole or electron conductivity, effective mass and inner potential by simple algorithms without approximations. The high-Z bcc metals with large spin-orbit-induced bandgaps are discussed as candidates for topologically non-trivial surface states.

  4. Visualization of CSF Flow with Time-resolved 3D MR Velocity Mapping in Aqueductal Stenosis Before and After Endoscopic Third Ventriculostomy : A Feasibility Study.

    PubMed

    Brandner, Sebastian; Buchfelder, Michael; Eyuepoglu, Ilker Y; Luecking, Hannes; Doerfler, Arnd; Stadlbauer, Andreas

    2016-08-08

    The aim of this study was to evaluate timed-resolved three-dimensional (3D) magnetic resonance (MR) velocity mapping as a method for investigation of cerebrospinal fluid (CSF) flow changes in patients with aqueductal stenosis (AS) treated by endoscopic third ventriculostomy (ETV). The MR velocity mapping was performed in 12 AS patients before and after ETV and in 10 healthy volunteers by using a 3-Tesla MR system. Time-resolved 3D MR velocity mapping data were acquired with a standard 3D phase contrast (PC) sequence with cardiac triggering. Values of mean (vmean) and maximum (vpeak) velocity were measured at several ventricular structures using dedicated software. Of the patients 11 showed a satisfactory clinical improvement after ETV, whereas one patient needed subsequent shunt implantation. All AS patients showed significant hypomotile CSF flow dynamics in the third ventricle when compared to healthy subjects before surgery (p < 0.05). In contrast, CSF flow velocity was increased within the Foramen of Monro in AS patients. After ETV, all AS patients showed a decrease of CSF flow dynamics within the third ventricle. Mean and peak CSF flow velocities through the ventriculostomy were 1.72 ± 0.59 cm/s (vmean) and 3.53 ± 0.79 cm/s (vpeak), respectively after ETV. The patient who needed shunt implantation after ETV had the lowest flow velocities through the ventriculostomy. This study demonstrates that timed-resolved 3D MR velocity mapping is a useful imaging investigation for diagnostics and follow-up in patients with AS. This new technique provides an insight into the physiological CSF flow changes related with AS and its treatment.

  5. Azimuthally Anisotropic 3D Velocity Continuation

    DOE PAGES

    Burnett, William; Fomel, Sergey

    2011-01-01

    We extend time-domain velocity continuation to the zero-offset 3D azimuthally anisotropic case. Velocity continuation describes how a seismic image changes given a change in migration velocity. This description turns out to be of a wave propagation process, in which images change along a velocity axis. In the anisotropic case, the velocity model is multiparameter. Therefore, anisotropic image propagation is multidimensional. We use a three-parameter slowness model, which is related to azimuthal variations in velocity, as well as their principal directions. This information is useful for fracture and reservoir characterization from seismic data. We provide synthetic diffraction imaging examples to illustratemore » the concept and potential applications of azimuthal velocity continuation and to analyze the impulse response of the 3D velocity continuation operator.« less

  6. [3D emulation of epicardium dynamic mapping].

    PubMed

    Lu, Jun; Yang, Cui-Wei; Fang, Zu-Xiang

    2005-03-01

    In order to realize epicardium dynamic mapping of the whole atria, 3-D graphics are drawn with OpenGL. Some source codes are introduced in the paper to explain how to produce, read, and manipulate 3-D model data.

  7. Positional Awareness Map 3D (PAM3D)

    NASA Technical Reports Server (NTRS)

    Hoffman, Monica; Allen, Earl L.; Yount, John W.; Norcross, April Louise

    2012-01-01

    The Western Aeronautical Test Range of the National Aeronautics and Space Administration s Dryden Flight Research Center needed to address the aging software and hardware of its current situational awareness display application, the Global Real-Time Interactive Map (GRIM). GRIM was initially developed in the late 1980s and executes on older PC architectures using a Linux operating system that is no longer supported. Additionally, the software is difficult to maintain due to its complexity and loss of developer knowledge. It was decided that a replacement application must be developed or acquired in the near future. The replacement must provide the functionality of the original system, the ability to monitor test flight vehicles in real-time, and add improvements such as high resolution imagery and true 3-dimensional capability. This paper will discuss the process of determining the best approach to replace GRIM, and the functionality and capabilities of the first release of the Positional Awareness Map 3D.

  8. A 3D Geostatistical Mapping Tool

    SciTech Connect

    Weiss, W. W.; Stevenson, Graig; Patel, Ketan; Wang, Jun

    1999-02-09

    This software provides accurate 3D reservoir modeling tools and high quality 3D graphics for PC platforms enabling engineers and geologists to better comprehend reservoirs and consequently improve their decisions. The mapping algorithms are fractals, kriging, sequential guassian simulation, and three nearest neighbor methods.

  9. Investigation of surface wave amplitudes in 3-D velocity and 3-D Q models

    NASA Astrophysics Data System (ADS)

    Ruan, Y.; Zhou, Y.

    2010-12-01

    It has been long recognized that seismic amplitudes depend on both wave speed structures and anelasticity (Q) structures. However, the effects of lateral heterogeneities in wave speed and Q structures on seismic amplitudes has not been well understood. We investigate the effects of 3-D wave speed and 3-D anelasticity (Q) structures on surface-wave amplitudes based upon wave propagation simulations of twelve globally-distributed earthquakes and 801 stations in Earth models with and without lateral heterogeneities in wave speed and anelasticity using a Spectral Element Method (SEM). Our tomographic-like 3-D Q models are converted from a velocity model S20RTS using a set of reasonable mineralogical parameters, assuming lateral perturbations in both velocity and Q are due to temperature perturbations. Surface-wave amplitude variations of SEM seismograms are measured in the period range of 50--200 s using boxcar taper, cosine taper and Slepian multi-tapers. We calculate ray-theoretical predictions of surface-wave amplitude perturbations due to elastic focusing, attenuation, and anelastic focusing which respectively depend upon the second spatial derivative (''roughness'') of perturbations in phase velocity, 1/Q, and the roughness of perturbations in 1/Q. Both numerical experiments and theoretical calculations show that (1) for short-period (~ 50 s) surface waves, the effects of amplitude attenuation due to 3-D Q structures are comparable with elastic focusing effects due to 3-D wave speed structures; and (2) for long-period (> 100 s) surface waves, the effects of attenuation become much weaker than elastic focusing; and (3) elastic focusing effects are correlated with anelastic focusing at all periods due to the correlation between velocity and Q models; and (4) amplitude perturbations are depend on measurement techniques and therefore cannot be directly compared with ray-theoretical predictions because ray theory does not account for the effects of measurement

  10. 3D finite element simulations of high velocity projectile impact

    NASA Astrophysics Data System (ADS)

    Ožbolt, Joško; İrhan, Barış; Ruta, Daniela

    2015-09-01

    An explicit three-dimensional (3D) finite element (FE) code is developed for the simulation of high velocity impact and fragmentation events. The rate sensitive microplane material model, which accounts for large deformations and rate effects, is used as a constitutive law. In the code large deformation frictional contact is treated by forward incremental Lagrange multiplier method. To handle highly distorted and damaged elements the approach based on the element deletion is employed. The code is then used in 3D FE simulations of high velocity projectile impact. The results of the numerical simulations are evaluated and compared with experimental results. It is shown that it realistically predicts failure mode and exit velocities for different geometries of plain concrete slab. Moreover, the importance of some relevant parameters, such as contact friction, rate sensitivity, bulk viscosity and deletion criteria are addressed.

  11. Measuring the Stellar Halo Velocity Anisotropy With 3D Kinematics

    NASA Astrophysics Data System (ADS)

    Cunningham, Emily C.; Deason, Alis J.; Guhathakurta, Puragra; Rockosi, Constance M.; van der Marel, Roeland P.; Sohn, S. Tony

    2016-08-01

    We present the first measurement of the anisotropy parameter β using 3D kinematic information outside of the solar neighborhood. Our sample consists of 13 Milky Way halo stars with measured proper motions and radial velocities in the line of sight of M31. Proper motions were measured using deep, multi-epoch HST imaging, and radial velocities were measured from Keck II/DEIMOS spectra. We measure β = -0.3-0.9 +0.4, which is consistent with isotropy, and inconsistent with measurements in the solar neighborhood. We suggest that this may be the kinematic signature of a relatively early, massive accretion event, or perhaps several such events.

  12. AntigenMap 3D: an online antigenic cartography resource.

    PubMed

    Barnett, J Lamar; Yang, Jialiang; Cai, Zhipeng; Zhang, Tong; Wan, Xiu-Feng

    2012-05-01

    Antigenic cartography is a useful technique to visualize and minimize errors in immunological data by projecting antigens to 2D or 3D cartography. However, a 2D cartography may not be sufficient to capture the antigenic relationship from high-dimensional immunological data. AntigenMap 3D presents an online, interactive, and robust 3D antigenic cartography construction and visualization resource. AntigenMap 3D can be applied to identify antigenic variants and vaccine strain candidates for pathogens with rapid antigenic variations, such as influenza A virus. http://sysbio.cvm.msstate.edu/AntigenMap3D

  13. Measurable realistic image-based 3D mapping

    NASA Astrophysics Data System (ADS)

    Liu, W.; Wang, J.; Wang, J. J.; Ding, W.; Almagbile, A.

    2011-12-01

    Maps with 3D visual models are becoming a remarkable feature of 3D map services. High-resolution image data is obtained for the construction of 3D visualized models.The3D map not only provides the capabilities of 3D measurements and knowledge mining, but also provides the virtual experienceof places of interest, such as demonstrated in the Google Earth. Applications of 3D maps are expanding into the areas of architecture, property management, and urban environment monitoring. However, the reconstruction of high quality 3D models is time consuming, and requires robust hardware and powerful software to handle the enormous amount of data. This is especially for automatic implementation of 3D models and the representation of complicated surfacesthat still need improvements with in the visualisation techniques. The shortcoming of 3D model-based maps is the limitation of detailed coverage since a user can only view and measure objects that are already modelled in the virtual environment. This paper proposes and demonstrates a 3D map concept that is realistic and image-based, that enables geometric measurements and geo-location services. Additionally, image-based 3D maps provide more detailed information of the real world than 3D model-based maps. The image-based 3D maps use geo-referenced stereo images or panoramic images. The geometric relationships between objects in the images can be resolved from the geometric model of stereo images. The panoramic function makes 3D maps more interactive with users but also creates an interesting immersive circumstance. Actually, unmeasurable image-based 3D maps already exist, such as Google street view, but only provide virtual experiences in terms of photos. The topographic and terrain attributes, such as shapes and heights though are omitted. This paper also discusses the potential for using a low cost land Mobile Mapping System (MMS) to implement realistic image 3D mapping, and evaluates the positioning accuracy that a measureable

  14. 3-D Velocity Measurement of Natural Convection Using Image Processing

    NASA Astrophysics Data System (ADS)

    Shinoki, Masatoshi; Ozawa, Mamoru; Okada, Toshifumi; Kimura, Ichiro

    This paper describes quantitative three-dimensional measurement method for flow field of a rotating Rayleigh-Benard convection in a cylindrical cell heated below and cooled above. A correlation method for two-dimensional measurement was well advanced to a spatio-temporal correlation method. Erroneous vectors, often appeared in the correlation method, was successfully removed using Hopfield neural network. As a result, calculated 3-D velocity vector distribution well corresponded to the observed temperature distribution. Consequently, the simultaneous three-dimensional measurement system for temperature and flow field was developed.

  15. 3D mapping of breast surface using digital fringe projection

    NASA Astrophysics Data System (ADS)

    Vairavan, Rajendaran; Retnasamy, Vithyacharan; Mohamad Shahimin, Mukhzeer; Sauli, Zaliman; Leng, Lai Siang; Wan Norhaimi, Wan Mokhzani; Marimuthu, Rajeswaran; Abdullah, Othman; Kirtsaeng, Supap

    2017-02-01

    Optical sensing technique has inherited non-contact nature for generating 3D surface mapping where its application ranges from MEMS component characterization, corrosion analysis, and vibration analysis. In particular, the digital fringe projection is utilized for 3D mapping of objects through the illumination of structured light for medical application extending from oral dental measurements, lower back deformation analysis, monitoring of scoliosis and 3D face reconstruction for biometric identification. However, the usage of digital fringe projection for 3D mapping of human breast is very minimal. Thus, this paper addresses the application of digital fringe projection for 3D mapping of breast surface based on total non-contact nature. In this work, phase shift method is utilized to perform the 3D mapping. The phase shifted fringe pattern are displayed through a digital projector onto the breast surface, and the distorted fringe patterns are captured by a CCD camera. A phase map is produced, and phase unwrapping was executed to obtain the 3D surface mapping of the breast. The surface height profile from 3D fringe projection was compared with the surface height measured by a direct method using electronic digital vernier caliper. Preliminary results showed the feasibility of digital fringe projection in providing a 3D mapping of breast and its application could be further extended for breast carcinoma detection.

  16. MAP3D: a media processor approach for high-end 3D graphics

    NASA Astrophysics Data System (ADS)

    Darsa, Lucia; Stadnicki, Steven; Basoglu, Chris

    1999-12-01

    Equator Technologies, Inc. has used a software-first approach to produce several programmable and advanced VLIW processor architectures that have the flexibility to run both traditional systems tasks and an array of media-rich applications. For example, Equator's MAP1000A is the world's fastest single-chip programmable signal and image processor targeted for digital consumer and office automation markets. The Equator MAP3D is a proposal for the architecture of the next generation of the Equator MAP family. The MAP3D is designed to achieve high-end 3D performance and a variety of customizable special effects by combining special graphics features with high performance floating-point and media processor architecture. As a programmable media processor, it offers the advantages of a completely configurable 3D pipeline--allowing developers to experiment with different algorithms and to tailor their pipeline to achieve the highest performance for a particular application. With the support of Equator's advanced C compiler and toolkit, MAP3D programs can be written in a high-level language. This allows the compiler to successfully find and exploit any parallelism in a programmer's code, thus decreasing the time to market of a given applications. The ability to run an operating system makes it possible to run concurrent applications in the MAP3D chip, such as video decoding while executing the 3D pipelines, so that integration of applications is easily achieved--using real-time decoded imagery for texturing 3D objects, for instance. This novel architecture enables an affordable, integrated solution for high performance 3D graphics.

  17. Joint Impact Proposal: A complete velocity resolved 3-D [CII] map of the M51 grand-design spiral galaxy: Unraveling the impact of spiral density waves on the evolution of the ISM and star formation.

    NASA Astrophysics Data System (ADS)

    Stutzki, Juergen

    2015-10-01

    We propose to obtain the first complete, velocity resolved [CII] 158um image of the M51 grand-design spiral galaxy with the upGREAT and FIFI-LS instruments on SOFIA. Spiral density waves play a fundamental role on the conversion of atomic to molecular gas, leading to gravitational contraction and thus to star formation. Understanding the impact of spiral density waves on the lifecycle of the interstellar medium and on star formation in galaxies is thus critical for our understanding of galaxy evolution. The [CII] line (in combination with the low-J CO lines and HI 21 cm) is an important tool to diagnose the physical state of the ISM. It can reveal the distribution of the gas that is making a transition between atomic and molecular phases, including the CO-dark H2 gas (hydrogen molecular but carbon ionized, and thus not traced by either HI or CO) in the spiral arms and interarm regions of M51. We will use the high spectral resolution of the upGREAT instrument to resolve spiral arms in velocity, allowing us to study the flow of gas through spiral arms and measure line widths and determine the dynamical state of prominent interarm clouds. The significantly more sensitive FIFI-LS will be used to detect extended faint [CII] emission in the interarm regions and outskirts of the galaxy, including the gas connection to the companion galaxy. The 3-D data cube of velocity-resolved [CII] in this nearby galaxy, combined with the wealth of ancillary data, can be used for a large set of investigations by the broader astronomical community. It will provide for the first time the link between the detailed physical processes in the star-forming ISM in the Milky Way and the average properties of distant external galaxies. This complete map will be also an excellent showcase of SOFIA's capabilities for years to come.

  18. Joint Impact Proposal: A complete velocity resolved 3-D [CII] map of the M51 grand-design spiral galaxy: Unraveling the impact of spiral density waves on the evolution of the ISM and star formation.

    NASA Astrophysics Data System (ADS)

    Pineda, Jorge

    2015-10-01

    We propose to obtain the first complete, velocity resolved [CII] 158um image of the M51 grand-design spiral galaxy with the upGREAT and FIFI-LS instruments on SOFIA. Spiral density waves play a fundamental role on the conversion of atomic to molecular gas, leading to gravitational contraction and thus to star formation. Understanding the impact of spiral density waves on the lifecycle of the interstellar medium and on star formation in galaxies is thus critical for our understanding of galaxy evolution. The [CII] line (in combination with the low-J CO lines and HI 21 cm) is an important tool to diagnose the physical state of the ISM. It can reveal the distribution of the gas that is making a transition between atomic and molecular phases, including the CO-dark H2 gas (hydrogen molecular but carbon ionized, and thus not traced by either HI or CO) in the spiral arms and interarm regions of M51. We will use the high spectral resolution of the upGREAT instrument to resolve spiral arms in velocity, allowing us to study the flow of gas through spiral arms and measure line widths and determine the dynamical state of prominent interarm clouds. The significantly more sensitive FIFI-LS will be used to detect extended faint [CII] emission in the interarm regions and outskirts of the galaxy, including the gas connection to the companion galaxy. The 3-D data cube of velocity--resolved [CII] in this nearby galaxy, combined with the wealth of ancillary data, can be used for a large set of investigations by the broader astronomical community. It will provide for the first time the link between the detailed physical processes in the star-forming ISM in the Milky Way and the average properties of distant external galaxies. This complete map will be also an excellent showcase of SOFIA's capabilities for years to come.

  19. From Surface Data to 3D Geologic Maps

    NASA Astrophysics Data System (ADS)

    Dhont, D.; Luxey, P.; Longuesserre, V.; Monod, B.; Guillaume, B.

    2008-12-01

    New trends in earth sciences are mostly related to technologies allowing graphical representations of the geology in 3D. However, the concept of 3D geologic map is commonly misused. For instance, displays of geologic maps draped onto DEM in rotating perspective views have been misleadingly called 3D geologic maps, but this still cannot provide any volumetric underground information as a true 3D geologic map should. Here, we present a way to produce mathematically and geometrically correct 3D geologic maps constituted by the volume and shape of all geologic features of a given area. The originality of the method is that it is based on the integration of surface data only consisting of (1) geologic maps, (2) satellite images, (3) DEM and (4) bedding dips and strikes. To generate 3D geologic maps, we used a 3D geologic modeler that combines and extrapolates the surface information into a coherent 3D data set. The significance of geometrically correct 3D geologic maps is demonstrated for various geologic settings and applications. 3D models are of primarily importance for educational purposes because they reveal features that standard 2D geologic maps by themselves could not show. The 3D visualization helps in the understanding of the geometrical relationship between the different geologic features and, in turn, for the quantification of the geology at the regional scale. Furthermore, given the logistical challenges associated with modern oil and mineral exploration in remote and rugged terrain, these volume-based models can provide geological and commercial insight prior to seismic evaluation.

  20. Interactive mapping on 3-D terrain models

    NASA Astrophysics Data System (ADS)

    Bernardin, T.; Cowgill, E.; Gold, R.; Hamann, B.; Kreylos, O.; Schmitt, A.

    2006-10-01

    We present an interactive, real-time mapping system for use with digital elevation models and remotely sensed multispectral imagery that aids geoscientists in the creation and interpretation of geologic/neotectonic maps at length scales of 10 m to 1000 km. Our system provides a terrain visualization of the surface of the Earth or other terrestrial planets by displaying a virtual terrain model generated from a digital elevation model overlain by a color texture generated from orthophotos or satellite imagery. We use a quadtree-based, multiresolution display method to render in real time high-resolution virtual terrain models that span large spatial regions. The system allows users to measure the orientations of geologic surfaces and record their observations by drawing lines directly on the virtual terrain model. In addition, interpretive surfaces can be generated from these drawings and displayed to facilitate understanding of the three-dimensional geometry of geologic surfaces. The main strength of our system is the combination of real-time rendering and interactive mapping performed directly on the virtual terrain model with the ability to navigate the scene while changing viewpoints arbitrarily during mapping. User studies and comparisons with commercially available mapping software show that our system improves mapping accuracy and efficiency and also yields observations that cannot be made with existing systems.

  1. Visualizing 3D velocity fields near contour surfaces

    SciTech Connect

    Max, N.; Crawfis, R.; Grant, C.

    1994-03-01

    Vector field rendering is difficult in 3D because the vector icons overlap and hide each other. We propose four different techniques for visualizing vector fields only near surfaces. The first uses motion blurred particles in a thickened region around the surface. The second uses a voxel grid to contain integral curves of the vector field. The third uses many antialiased lines through the surface, and the fourth uses hairs sprouting from the surface and then bending in the direction of the vector field. All the methods use the graphite pipeline, allowing real time rotation and interaction, and the first two methods can animate the texture to move in the flow determined by the velocity field.

  2. Vel-IO 3D: A tool for 3D velocity model construction, optimization and time-depth conversion in 3D geological modeling workflow

    NASA Astrophysics Data System (ADS)

    Maesano, Francesco E.; D'Ambrogi, Chiara

    2017-02-01

    We present Vel-IO 3D, a tool for 3D velocity model creation and time-depth conversion, as part of a workflow for 3D model building. The workflow addresses the management of large subsurface dataset, mainly seismic lines and well logs, and the construction of a 3D velocity model able to describe the variation of the velocity parameters related to strong facies and thickness variability and to high structural complexity. Although it is applicable in many geological contexts (e.g. foreland basins, large intermountain basins), it is particularly suitable in wide flat regions, where subsurface structures have no surface expression. The Vel-IO 3D tool is composed by three scripts, written in Python 2.7.11, that automate i) the 3D instantaneous velocity model building, ii) the velocity model optimization, iii) the time-depth conversion. They determine a 3D geological model that is consistent with the primary geological constraints (e.g. depth of the markers on wells). The proposed workflow and the Vel-IO 3D tool have been tested, during the EU funded Project GeoMol, by the construction of the 3D geological model of a flat region, 5700 km2 in area, located in the central part of the Po Plain. The final 3D model showed the efficiency of the workflow and Vel-IO 3D tool in the management of large amount of data both in time and depth domain. A 4 layer-cake velocity model has been applied to a several thousand (5000-13,000 m) thick succession, with 15 horizons from Triassic up to Pleistocene, complicated by a Mesozoic extensional tectonics and by buried thrusts related to Southern Alps and Northern Apennines.

  3. AntigenMap 3D: an online antigenic cartography resource

    PubMed Central

    Barnett, J. Lamar; Yang, Jialiang; Cai, Zhipeng; Zhang, Tong; Wan, Xiu-Feng

    2012-01-01

    Summary: Antigenic cartography is a useful technique to visualize and minimize errors in immunological data by projecting antigens to 2D or 3D cartography. However, a 2D cartography may not be sufficient to capture the antigenic relationship from high-dimensional immunological data. AntigenMap 3D presents an online, interactive, and robust 3D antigenic cartography construction and visualization resource. AntigenMap 3D can be applied to identify antigenic variants and vaccine strain candidates for pathogens with rapid antigenic variations, such as influenza A virus. Availability and implementation: http://sysbio.cvm.msstate.edu/AntigenMap3D Contact: wan@cvm.msstate.edu; wanhenry@yahoo.com PMID:22399675

  4. Geological mapping goes 3-D in response to societal needs

    USGS Publications Warehouse

    Thorleifson, H.; Berg, R.C.; Russell, H.A.J.

    2010-01-01

    The transition to 3-D mapping has been made possible by technological advances in digital cartography, GIS, data storage, analysis, and visualization. Despite various challenges, technological advancements facilitated a gradual transition from 2-D maps to 2.5-D draped maps to 3-D geological mapping, supported by digital spatial and relational databases that can be interrogated horizontally or vertically and viewed interactively. Challenges associated with data collection, human resources, and information management are daunting due to their resource and training requirements. The exchange of strategies at the workshops has highlighted the use of basin analysis to develop a process-based predictive knowledge framework that facilitates data integration. Three-dimensional geological information meets a public demand that fills in the blanks left by conventional 2-D mapping. Two-dimensional mapping will, however, remain the standard method for extensive areas of complex geology, particularly where deformed igneous and metamorphic rocks defy attempts at 3-D depiction.

  5. Sodium 3D COncentration MApping (COMA 3D) Using 23Na and Proton MRI

    PubMed Central

    Truong, Milton L.; Harrington, Michael G.; Schepkin, Victor D.; Chekmenev, Eduard Y.

    2014-01-01

    Functional changes of sodium 3D MRI signals were converted into millimolar concentration changes using an open-source fully automated MATLAB toolbox. These concentration changes are visualized via 3D sodium concentration maps, and they are overlaid over conventional 3D proton images to provide high-resolution co-registration for easy correlation of functional changes to anatomical regions. Nearly 5000/hour concentration maps were generated on a personal computer (ca. 2012) using 21.1 T 3D sodium MRI brain images of live rats with spatial resolution of 0.8×0.8×0.8 mm3 and imaging matrices of 60×60×60. The produced concentration maps allowed for non-invasive quantitative measurement of in vivo sodium concentration in the normal rat brain as a functional response to migraine-like conditions. The presented work can also be applied to sodium-associated changes in migraine, cancer, and other metabolic abnormalities that can be sensed by molecular imaging. The MATLAB toolbox allows for automated image analysis of the 3D images acquired on the Bruker platform and can be extended to other imaging platforms. The resulting images are presented in a form of series of 2D slices in all three dimensions in native MATLAB and PDF formats. The following is provided: (a) MATLAB source code for image processing, (b) the detailed processing procedures, (c) description of the code and all sub-routines, (d) example data sets of initial and processed data. The toolbox can be downloaded at: http://www.vuiis.vanderbilt.edu/~truongm/COMA3D/ PMID:25261742

  6. Sodium 3D COncentration MApping (COMA 3D) using 23Na and proton MRI

    NASA Astrophysics Data System (ADS)

    Truong, Milton L.; Harrington, Michael G.; Schepkin, Victor D.; Chekmenev, Eduard Y.

    2014-10-01

    Functional changes of sodium 3D MRI signals were converted into millimolar concentration changes using an open-source fully automated MATLAB toolbox. These concentration changes are visualized via 3D sodium concentration maps, and they are overlaid over conventional 3D proton images to provide high-resolution co-registration for easy correlation of functional changes to anatomical regions. Nearly 5000/h concentration maps were generated on a personal computer (ca. 2012) using 21.1 T 3D sodium MRI brain images of live rats with spatial resolution of 0.8 × 0.8 × 0.8 mm3 and imaging matrices of 60 × 60 × 60. The produced concentration maps allowed for non-invasive quantitative measurement of in vivo sodium concentration in the normal rat brain as a functional response to migraine-like conditions. The presented work can also be applied to sodium-associated changes in migraine, cancer, and other metabolic abnormalities that can be sensed by molecular imaging. The MATLAB toolbox allows for automated image analysis of the 3D images acquired on the Bruker platform and can be extended to other imaging platforms. The resulting images are presented in a form of series of 2D slices in all three dimensions in native MATLAB and PDF formats. The following is provided: (a) MATLAB source code for image processing, (b) the detailed processing procedures, (c) description of the code and all sub-routines, (d) example data sets of initial and processed data. The toolbox can be downloaded at: http://www.vuiis.vanderbilt.edu/~truongm/COMA3D/.

  7. CMap3D: a 3D visualization tool for comparative genetic maps.

    PubMed

    Duran, Chris; Boskovic, Zoran; Imelfort, Michael; Batley, Jacqueline; Hamilton, Nicholas A; Edwards, David

    2010-01-15

    Genetic linkage mapping enables the study of genome organization and the association of heritable traits with regions of sequenced genomes. Comparative genetic mapping is particularly powerful as it allows translation of information between related genomes and gives an insight into genome evolution. A common tool for the storage, comparison and visualization of genetic maps is CMap. However, current visualization in CMap is limited to the comparison of adjacent aligned maps. To overcome this limitation, we have developed CMap3D, a tool to compare multiple genetic maps in three-dimensional space. CMap3D is based on a client/server model ensuring operability with current CMap data repositories. This tool can be applied to any species where genetic map information is available and enables rapid, direct comparison between multiple aligned maps. The software is a stand-alone application written in Processing and Java. Binaries are available for Windows, OSX and Linux, and require Sun Microsystems Java Runtime Environment 1.6 or later. The software is freely available for non-commercial use from http://flora.acpfg.com.au/.

  8. Uncertainty assessment of 3D instantaneous velocity model from stack velocities

    NASA Astrophysics Data System (ADS)

    Emanuele Maesano, Francesco; D'Ambrogi, Chiara

    2015-04-01

    3D modelling is a powerful tool that is experiencing increasing applications in data analysis and dissemination. At the same time the need of quantitative uncertainty evaluation is strongly requested in many aspects of the geological sciences and by the stakeholders. In many cases the starting point for 3D model building is the interpretation of seismic profiles that provide indirect information about the geology of the subsurface in the domain of time. The most problematic step in the 3D modelling construction is the conversion of the horizons and faults interpreted in time domain to the depth domain. In this step the dominant variable that could lead to significantly different results is the velocity. The knowledge of the subsurface velocities is related mainly to punctual data (sonic logs) that are often sparsely distributed in the areas covered by the seismic interpretation. The extrapolation of velocity information to wide extended horizons is thus a critical step to obtain a 3D model in depth that can be used for predictive purpose. In the EU-funded GeoMol Project, the availability of a dense network of seismic lines (confidentially provided by ENI S.p.A.) in the Central Po Plain, is paired with the presence of 136 well logs, but few of them have sonic logs and in some portion of the area the wells are very widely spaced. The depth conversion of the 3D model in time domain has been performed testing different strategies for the use and the interpolation of velocity data. The final model has been obtained using a 4 layer cake 3D instantaneous velocity model that considers both the initial velocity (v0) in every reference horizon and the gradient of velocity variation with depth (k). Using this method it is possible to consider the geological constraint given by the geometries of the horizons and the geo-statistical approach to the interpolation of velocities and gradient. Here we present an experiment based on the use of set of pseudo-wells obtained from the

  9. Reconstruction of 3D structures from protein contact maps.

    PubMed

    Vassura, Marco; Margara, Luciano; Di Lena, Pietro; Medri, Filippo; Fariselli, Piero; Casadio, Rita

    2008-01-01

    The prediction of the protein tertiary structure from solely its residue sequence (the so called Protein Folding Problem) is one of the most challenging problems in Structural Bioinformatics. We focus on the protein residue contact map. When this map is assigned it is possible to reconstruct the 3D structure of the protein backbone. The general problem of recovering a set of 3D coordinates consistent with some given contact map is known as a unit-disk-graph realization problem and it has been recently proven to be NP-Hard. In this paper we describe a heuristic method (COMAR) that is able to reconstruct with an unprecedented rate (3-15 seconds) a 3D model that exactly matches the target contact map of a protein. Working with a non-redundant set of 1760 proteins, we find that the scoring efficiency of finding a 3D model very close to the protein native structure depends on the threshold value adopted to compute the protein residue contact map. Contact maps whose threshold values range from 10 to 18 Angstroms allow reconstructing 3D models that are very similar to the proteins native structure.

  10. Analysis of the 3D Structure and Velocity of a CME on 2 January 2008

    NASA Astrophysics Data System (ADS)

    López, F. M.; Cremades, H.

    We perform an analysis of the 3D structure and velocity of a CME (coronal mass ejection) ejected on 2 January 2008. The event was imaged by both STEREO A and B spacecraft (mutual separation of ˜44°), providing polarized images of the event from two different points of view. To obtain information on the 3D structure of the CME from polarized images, a polarization technique (Moran & Davila, Science 305, 66, 2003) is applied. Aided by this method, we have constructed topographical maps which show the height of the various event features from the plane of the sky (i.e. toward or away from the observer) and have dinamically analyzed and compared the real and projected on the plane of the sky velocities.

  11. 3D Velocity Structure in Southern Haiti from Local Earthquake Tomography

    NASA Astrophysics Data System (ADS)

    Douilly, R.; Ellsworth, W. L.; Kissling, E. H.; Freed, A. M.; Deschamps, A.; de Lepinay, B. M.

    2016-12-01

    We investigate 3D local earthquake tomography for high-quality travel time arrivals from aftershocks following the 2010 M7.0 Haiti earthquake on the Léogâne fault. The data were recorded by 35 stations, including 19 ocean bottom seismometers, from which we selected 595 events to simultaneously invert for hypocenter location and 3D Vp and Vs velocity structures in southern Haiti. We performed several resolution tests and concluded that clear features can be recovered to a depth of 15 km. At 5km depth we distinguish a broad low velocity zone in the Vp and Vs structure offshore near Gonave Island, which correlate with layers of marine sediments. Results show a pronounced low velocity zone in the upper 5 km across the city of Léogâne, which is consistent with the sedimentary basin location from geologic map. At 10 km depth, we detect a low velocity anomaly offshore near the Trois Baies fault and a NW-SE directed low velocity zone onshore across Petit-Goâve and Jacmel, which is consistent with a suspected fault from a previous study and that we refer to it in our study as the Petit-Goâve-Jacmel fault (PGJF). These observations suggest that low velocity structures delineate fault structures and the sedimentary basins across the southern peninsula, which is extremely useful for seismic hazard assessment in Haiti.

  12. MSV3d: database of human MisSense Variants mapped to 3D protein structure.

    PubMed

    Luu, Tien-Dao; Rusu, Alin-Mihai; Walter, Vincent; Ripp, Raymond; Moulinier, Luc; Muller, Jean; Toursel, Thierry; Thompson, Julie D; Poch, Olivier; Nguyen, Hoan

    2012-01-01

    The elucidation of the complex relationships linking genotypic and phenotypic variations to protein structure is a major challenge in the post-genomic era. We present MSV3d (Database of human MisSense Variants mapped to 3D protein structure), a new database that contains detailed annotation of missense variants of all human proteins (20 199 proteins). The multi-level characterization includes details of the physico-chemical changes induced by amino acid modification, as well as information related to the conservation of the mutated residue and its position relative to functional features in the available or predicted 3D model. Major releases of the database are automatically generated and updated regularly in line with the dbSNP (database of Single Nucleotide Polymorphism) and SwissVar releases, by exploiting the extensive Décrypthon computational grid resources. The database (http://decrypthon.igbmc.fr/msv3d) is easily accessible through a simple web interface coupled to a powerful query engine and a standard web service. The content is completely or partially downloadable in XML or flat file formats. Database URL: http://decrypthon.igbmc.fr/msv3d.

  13. UCVM: Open Source Software for Understanding and Delivering 3D Velocity Models

    NASA Astrophysics Data System (ADS)

    Gill, D.; Small, P.; Maechling, P. J.; Jordan, T. H.; Shaw, J. H.; Plesch, A.; Chen, P.; Lee, E. J.; Taborda, R.; Olsen, K. B.; Callaghan, S.

    2014-12-01

    Physics-based ground motion simulations can calculate the propagation of earthquake waves through 3D velocity models of the Earth. The Southern California Earthquake Center (SCEC) has developed the Unified Community Velocity Model (UCVM) framework to help researchers build structured or unstructured velocity meshes from 3D velocity models for use in wave propagation simulations. The UCVM software framework makes it easy to extract P and S wave propagation speeds and other material properties from 3D velocity models by providing a common interface through which researchers can query earth models for a given location and depth. Currently, the platform supports multiple California models, including SCEC CVM-S4 and CVM-H 11.9.1, and has been designed to support models from any region on earth. UCVM is currently being use to generate velocity meshes for many SCEC wave propagation codes, including AWP-ODC-SGT and Hercules. In this presentation, we describe improvements to the UCVM software. The current version, UCVM 14.3.0, released in March of 2014, supports the newest Southern California velocity model, CVM-S4.26, which was derived from 26 full-3D tomographic iterations using CVM-S4 as the starting model (Lee et al., this meeting), and the Broadband 1D velocity model used in the CyberShake 14.2 study. We have ported UCVM to multiple Linux distributions and OS X. Also included in this release is the ability to add small-scale stochastic heterogeneities to extract Cartesian meshes for use in high-frequency ground motion simulations. This tool was built using the C language open-source FFT library, FFTW. The stochastic parameters (Hurst exponent, correlation length, and the horizontal/vertical aspect ratio) can be customized by the user. UCVM v14.3.0 also provides visualization scripts for constructing cross-sections, horizontal slices, basin depths, and Vs30 maps. The interface allows researchers to visually review velocity models . Also, UCVM v14.3.0 can extract

  14. Automatic Texture Mapping of Architectural and Archaeological 3d Models

    NASA Astrophysics Data System (ADS)

    Kersten, T. P.; Stallmann, D.

    2012-07-01

    Today, detailed, complete and exact 3D models with photo-realistic textures are increasingly demanded for numerous applications in architecture and archaeology. Manual texture mapping of 3D models by digital photographs with software packages, such as Maxon Cinema 4D, Autodesk 3Ds Max or Maya, still requires a complex and time-consuming workflow. So, procedures for automatic texture mapping of 3D models are in demand. In this paper two automatic procedures are presented. The first procedure generates 3D surface models with textures by web services, while the second procedure textures already existing 3D models with the software tmapper. The program tmapper is based on the Multi Layer 3D image (ML3DImage) algorithm and developed in the programming language C++. The studies showing that the visibility analysis using the ML3DImage algorithm is not sufficient to obtain acceptable results of automatic texture mapping. To overcome the visibility problem the Point Cloud Painter algorithm in combination with the Z-buffer-procedure will be applied in the future.

  15. UCVM: An Open Source Software Package for Querying and Visualizing 3D Velocity Models

    NASA Astrophysics Data System (ADS)

    Gill, D.; Small, P.; Maechling, P. J.; Jordan, T. H.; Shaw, J. H.; Plesch, A.; Chen, P.; Lee, E. J.; Taborda, R.; Olsen, K. B.; Callaghan, S.

    2015-12-01

    Three-dimensional (3D) seismic velocity models provide foundational data for ground motion simulations that calculate the propagation of earthquake waves through the Earth. The Southern California Earthquake Center (SCEC) has developed the Unified Community Velocity Model (UCVM) package for both Linux and OS X. This unique framework provides a cohesive way for querying and visualizing 3D models. UCVM v14.3.0, supports many Southern California velocity models including CVM-S4, CVM-H 11.9.1, and CVM-S4.26. The last model was derived from 26 full-3D tomographic iterations on CVM-S4. Recently, UCVM has been used to deliver a prototype of a new 3D model of central California (CCA) also based on full-3D tomographic inversions. UCVM was used to provide initial plots of this model and will be used to deliver CCA to users when the model is publicly released. Visualizing models is also possible with UCVM. Integrated within the platform are plotting utilities that can generate 2D cross-sections, horizontal slices, and basin depth maps. UCVM can also export models in NetCDF format for easy import into IDV and ParaView. UCVM has also been prototyped to export models that are compatible with IRIS' new Earth Model Collaboration (EMC) visualization utility. This capability allows for user-specified horizontal slices and cross-sections to be plotted in the same 3D Earth space. UCVM was designed to help a wide variety of researchers. It is currently being use to generate velocity meshes for many SCEC wave propagation codes, including AWP-ODC-SGT and Hercules. It is also used to provide the initial input to SCEC's CyberShake platform. For those interested in specific data points, the software framework makes it easy to extract P and S wave propagation speeds and other material properties from 3D velocity models by providing a common interface through which researchers can query earth models for a given location and depth. Also included in the last release was the ability to add small

  16. A 3D digital map of rat brain.

    PubMed

    Toga, A W; Santori, E M; Hazani, R; Ambach, K

    1995-01-01

    A three dimensional (3D) computerized map of rat brain anatomy created with digital imaging techniques is described. Six male Sprague-Dawley rats, weighing 270-320 g, were used in the generation of this atlas. Their heads were frozen, and closely spaced cryosectional images were digitally captured. Each serial data set was organized into a digital volume, reoriented into a flat skull position, and brought into register with each other. A volume representative of the group following registration was chosen based on its anatomic correspondence with the other specimens as measured by image correlation coefficients and landmark matching. Mean positions of lambda, bregma, and the interaural plane of the group within the common coordinate system were used to transform the representative volume into a 3D map of rat neuroanatomy. images reconstructed from this 3D map are available to the public via Internet with an anonymous file transfer protocol (FTP) and World Wide Web. A complete description of the digital map is provided in a comprehensive set of sagittal planes (up to 0.031 mm spacing) containing stereotaxic reference grids. Sets of coronal and horizontal planes, resampled at the same increment, also are included. Specific anatomic features are identified in a second collection of images. Stylized anatomic boundaries and structural labels were incorporated into selected orthogonal planes. Electronic sharing and interactive use are benefits afforded by a digital format, but the foremost advantage of this 3D map is its whole brain integrated representation of rat in situ neuroanatomy.

  17. Navigating 3D electron microscopy maps with EM-SURFER.

    PubMed

    Esquivel-Rodríguez, Juan; Xiong, Yi; Han, Xusi; Guang, Shuomeng; Christoffer, Charles; Kihara, Daisuke

    2015-05-30

    The Electron Microscopy DataBank (EMDB) is growing rapidly, accumulating biological structural data obtained mainly by electron microscopy and tomography, which are emerging techniques for determining large biomolecular complex and subcellular structures. Together with the Protein Data Bank (PDB), EMDB is becoming a fundamental resource of the tertiary structures of biological macromolecules. To take full advantage of this indispensable resource, the ability to search the database by structural similarity is essential. However, unlike high-resolution structures stored in PDB, methods for comparing low-resolution electron microscopy (EM) density maps in EMDB are not well established. We developed a computational method for efficiently searching low-resolution EM maps. The method uses a compact fingerprint representation of EM maps based on the 3D Zernike descriptor, which is derived from a mathematical series expansion for EM maps that are considered as 3D functions. The method is implemented in a web server named EM-SURFER, which allows users to search against the entire EMDB in real-time. EM-SURFER compares the global shapes of EM maps. Examples of search results from different types of query structures are discussed. We developed EM-SURFER, which retrieves structurally relevant matches for query EM maps from EMDB within seconds. The unique capability of EM-SURFER to detect 3D shape similarity of low-resolution EM maps should prove invaluable in structural biology.

  18. Map-Reading Skill Development with 3D Technologies

    ERIC Educational Resources Information Center

    Carbonell Carrera, Carlos; Avarvarei, Bogdan Vlad; Chelariu, Elena Liliana; Draghia, Lucia; Avarvarei, Simona Catrinel

    2017-01-01

    Landforms often are represented on maps using abstract cartographic techniques that the reader must interpret for successful three-dimensional terrain visualization. New technologies in 3D landscape representation, both digital and tangible, offer the opportunity to visualize terrain in new ways. The results of a university student workshop, in…

  19. 3D resolved mapping of optical aberrations in thick tissues

    PubMed Central

    Zeng, Jun; Mahou, Pierre; Schanne-Klein, Marie-Claire; Beaurepaire, Emmanuel; Débarre, Delphine

    2012-01-01

    We demonstrate a simple method for mapping optical aberrations with 3D resolution within thick samples. The method relies on the local measurement of the variation in image quality with externally applied aberrations. We discuss the accuracy of the method as a function of the signal strength and of the aberration amplitude and we derive the achievable resolution for the resulting measurements. We then report on measured 3D aberration maps in human skin biopsies and mouse brain slices. From these data, we analyse the consequences of tissue structure and refractive index distribution on aberrations and imaging depth in normal and cleared tissue samples. The aberration maps allow the estimation of the typical aplanetism region size over which aberrations can be uniformly corrected. This method and data pave the way towards efficient correction strategies for tissue imaging applications. PMID:22876353

  20. The 3D velocity structure beneath Iceland: Identifying melt pathways

    NASA Astrophysics Data System (ADS)

    Allen, R.

    2003-04-01

    The integration of various seismic datasets, recorded by the broadband HOTSPOT network deployed across Iceland, provides one of the highest resolution studies of the crust and mantle structure associated with a plume-ridge system. The mantle P- and S-velocity models (ICEMAN), derived from teleseismic body-wave and surface wave analysis, show a vertical, cylindrical low velocity anomaly ˜200 km in diameter extending from ˜400 km, the maximum depth of resolution, up to ˜200 km above which low velocity material is present beneath all of Iceland. The maximum P- and S-velocity anomalies of -2% and -4% respectively are found beneath the northwestern edge of Vatnajokull. The crustal S-velocity model (ICECRTb) is constrained by local surface waves, refraction experiments and receiver functions, and shows significant variation in crustal thickness. The thinnest, ˜15 km, crust is found around coastal regions, the thickest crust is beneath northwestern Vatnajokull where it reaches a thickness of 45 km. Within this thick crustal root is a vertical low velocity anomaly connecting the core of the mantle anomaly to horizontal low velocity regions that extend along the western and eastern volcanic zones but not the northern volcanic zone. These crustal low velocity zones are interpreted as regions through which melt is fed from the mantle to shallow magma chambers beneath the rift zones, where crustal formation occurs. The pipework between the core of the mantle anomaly and the southern rift zones is responsible for ˜30 km thick crust. Its absence to the north results in relatively thin, ˜20 km thick, crust.

  1. Mapping detailed 3D information onto high resolution SAR signatures

    NASA Astrophysics Data System (ADS)

    Anglberger, H.; Speck, R.

    2017-05-01

    Due to challenges in the visual interpretation of radar signatures or in the subsequent information extraction, a fusion with other data sources can be beneficial. The most accurate basis for a fusion of any kind of remote sensing data is the mapping of the acquired 2D image space onto the true 3D geometry of the scenery. In the case of radar images this is a challenging task because the coordinate system is based on the measured range which causes ambiguous regions due to layover effects. This paper describes a method that accurately maps the detailed 3D information of a scene to the slantrange-based coordinate system of imaging radars. Due to this mapping all the contributing geometrical parts of one resolution cell can be determined in 3D space. The proposed method is highly efficient, because computationally expensive operations can be directly performed on graphics card hardware. The described approach builds a perfect basis for sophisticated methods to extract data from multiple complimentary sensors like from radar and optical images, especially because true 3D information from whole cities will be available in the near future. The performance of the developed methods will be demonstrated with high resolution radar data acquired by the space-borne SAR-sensor TerraSAR-X.

  2. 3-D shear velocity model of the Eastern and Southern Alps from ambient noise tomography

    NASA Astrophysics Data System (ADS)

    Qorbani, Ehsan; Zigone, Dimitri; Bokelmann, Götz; AlpArray-EASI Working Group

    2017-04-01

    The eastern and southern part of the Alpine chain is considered to be an area of complex tectonics, both in the crust and the lithosphere. Having a relatively dense network of seismic stations in this region provides an opportunity to study crustal velocity structure with ambient-noise tomography. In this study, we show results from ambient noise correlations. We used two year of continuous data recorded at 59 permanent stations and 19 stations of the AlpArray-EASI profile during 2014 and 2015. Cross correlations of ambient noise are computed in order to estimate the Green's functions of surface waves propagating between the station pairs. Dispersion curves of Rayleigh and Love waves are constructed between 2 and 40 seconds and are then inverted to obtain group velocity maps at different frequency. The Rayleigh and Love wave group velocity measurements are inverted for shear-wave velocities. We present here a 3-D shear-wave velocity model for the Eastern and Southern Alps. Our results show that velocity variations at short periods (up to 10 km depth) correlate well with the surface geology, e.g. tectonic features and faults. The results clearly show low velocity zones associated with the Po-Plain and the Molasse Basin. Under the Molasse basin the low velocity anomaly extends down to 10 km depth. We also observe a high-velocity anomaly surrounded by Northern Calcareous Alps and Dolomites (Southern Limestone Alps), where its southern edge is well-marked by the Periadriatic and Giudicarie lines. Sharp-high velocity zones at shallower depth are also observed which seem to be associated with the highly metamorphic basement, e.g. the Campo and Ötztal nappes.

  3. 3D Regression Heat Map Analysis of Population Study Data.

    PubMed

    Klemm, Paul; Lawonn, Kai; Glaßer, Sylvia; Niemann, Uli; Hegenscheid, Katrin; Völzke, Henry; Preim, Bernhard

    2016-01-01

    Epidemiological studies comprise heterogeneous data about a subject group to define disease-specific risk factors. These data contain information (features) about a subject's lifestyle, medical status as well as medical image data. Statistical regression analysis is used to evaluate these features and to identify feature combinations indicating a disease (the target feature). We propose an analysis approach of epidemiological data sets by incorporating all features in an exhaustive regression-based analysis. This approach combines all independent features w.r.t. a target feature. It provides a visualization that reveals insights into the data by highlighting relationships. The 3D Regression Heat Map, a novel 3D visual encoding, acts as an overview of the whole data set. It shows all combinations of two to three independent features with a specific target disease. Slicing through the 3D Regression Heat Map allows for the detailed analysis of the underlying relationships. Expert knowledge about disease-specific hypotheses can be included into the analysis by adjusting the regression model formulas. Furthermore, the influences of features can be assessed using a difference view comparing different calculation results. We applied our 3D Regression Heat Map method to a hepatic steatosis data set to reproduce results from a data mining-driven analysis. A qualitative analysis was conducted on a breast density data set. We were able to derive new hypotheses about relations between breast density and breast lesions with breast cancer. With the 3D Regression Heat Map, we present a visual overview of epidemiological data that allows for the first time an interactive regression-based analysis of large feature sets with respect to a disease.

  4. 3-D MAPPING TECHNOLOGIES FOR HIGH LEVEL WASTE TANKS

    SciTech Connect

    Marzolf, A.; Folsom, M.

    2010-08-31

    This research investigated four techniques that could be applicable for mapping of solids remaining in radioactive waste tanks at the Savannah River Site: stereo vision, LIDAR, flash LIDAR, and Structure from Motion (SfM). Stereo vision is the least appropriate technique for the solids mapping application. Although the equipment cost is low and repackaging would be fairly simple, the algorithms to create a 3D image from stereo vision would require significant further development and may not even be applicable since stereo vision works by finding disparity in feature point locations from the images taken by the cameras. When minimal variation in visual texture exists for an area of interest, it becomes difficult for the software to detect correspondences for that object. SfM appears to be appropriate for solids mapping in waste tanks. However, equipment development would be required for positioning and movement of the camera in the tank space to enable capturing a sequence of images of the scene. Since SfM requires the identification of distinctive features and associates those features to their corresponding instantiations in the other image frames, mockup testing would be required to determine the applicability of SfM technology for mapping of waste in tanks. There may be too few features to track between image frame sequences to employ the SfM technology since uniform appearance may exist when viewing the remaining solids in the interior of the waste tanks. Although scanning LIDAR appears to be an adequate solution, the expense of the equipment ($80,000-$120,000) and the need for further development to allow tank deployment may prohibit utilizing this technology. The development would include repackaging of equipment to permit deployment through the 4-inch access ports and to keep the equipment relatively uncontaminated to allow use in additional tanks. 3D flash LIDAR has a number of advantages over stereo vision, scanning LIDAR, and SfM, including full frame

  5. Direct ambient noise tomography for 3-D near surface shear velocity structure: methodology and applications

    NASA Astrophysics Data System (ADS)

    Yao, H.; Fang, H.; Li, C.; Liu, Y.; Zhang, H.; van der Hilst, R. D.; Huang, Y. C.

    2014-12-01

    Ambient noise tomography has provided essential constraints on crustal and uppermost mantle shear velocity structure in global seismology. Recent studies demonstrate that high frequency (e.g., ~ 1 Hz) surface waves between receivers at short distances can be successfully retrieved from ambient noise cross-correlation and then be used for imaging near surface or shallow crustal shear velocity structures. This approach provides important information for strong ground motion prediction in seismically active area and overburden structure characterization in oil and gas fields. Here we propose a new tomographic method to invert all surface wave dispersion data for 3-D variations of shear wavespeed without the intermediate step of phase or group velocity maps.The method uses frequency-dependent propagation paths and a wavelet-based sparsity-constrained tomographic inversion. A fast marching method is used to compute, at each period, surface wave traveltimes and ray paths between sources and receivers. This avoids the assumption of great-circle propagation that is used in most surface wave tomographic studies, but which is not appropriate in complex media. The wavelet coefficients of the velocity model are estimated with an iteratively reweighted least squares (IRLS) algorithm, and upon iterations the surface wave ray paths and the data sensitivity matrix are updated from the newly obtained velocity model. We apply this new method to determine the 3-D near surface wavespeed variations in the Taipei basin of Taiwan, Hefei urban area and a shale and gas production field in China using the high-frequency interstation Rayleigh wave dispersion data extracted from ambient noisecross-correlation. The results reveal strong effects of off-great-circle propagation of high-frequency surface waves in these regions with above 30% shear wavespeed variations. The proposed approach is more efficient and robust than the traditional two-step surface wave tomography for imaging complex

  6. Lidar on small UAV for 3D mapping

    NASA Astrophysics Data System (ADS)

    Tulldahl, H. Michael; Larsson, Hâkan

    2014-10-01

    Small UAV:s (Unmanned Aerial Vehicles) are currently in an explosive technical development phase. The performance of UAV-system components such as inertial navigation sensors, propulsion, control processors and algorithms are gradually improving. Simultaneously, lidar technologies are continuously developing in terms of reliability, accuracy, as well as speed of data collection, storage and processing. The lidar development towards miniature systems with high data rates has, together with recent UAV development, a great potential for new three dimensional (3D) mapping capabilities. Compared to lidar mapping from manned full-size aircraft a small unmanned aircraft can be cost efficient over small areas and more flexible for deployment. An advantage with high resolution lidar compared to 3D mapping from passive (multi angle) photogrammetry is the ability to penetrate through vegetation and detect partially obscured targets. Another advantage is the ability to obtain 3D data over the whole survey area, without the limited performance of passive photogrammetry in low contrast areas. The purpose of our work is to demonstrate 3D lidar mapping capability from a small multirotor UAV. We present the first experimental results and the mechanical and electrical integration of the Velodyne HDL-32E lidar on a six-rotor aircraft with a total weight of 7 kg. The rotating lidar is mounted at an angle of 20 degrees from the horizontal plane giving a vertical field-of-view of 10-50 degrees below the horizon in the aircraft forward directions. For absolute positioning of the 3D data, accurate positioning and orientation of the lidar sensor is of high importance. We evaluate the lidar data position accuracy both based on inertial navigation system (INS) data, and on INS data combined with lidar data. The INS sensors consist of accelerometers, gyroscopes, GPS, magnetometers, and a pressure sensor for altimetry. The lidar range resolution and accuracy is documented as well as the

  7. Sensing and 3D Mapping of Soil Compaction

    PubMed Central

    Tekin, Yücel; Kul, Basri; Okursoy, Rasim

    2008-01-01

    Soil compaction is an important physical limiting factor for the root growth and plant emergence and is one of the major causes for reduced crop yield worldwide. The objective of this study was to generate 2D/3D soil compaction maps for different depth layers of the soil. To do so, a soil penetrometer was designed, which was mounted on the three-point hitch of an agricultural tractor, consisting of a mechanical system, data acquisition system (DAS), and 2D/3D imaging and analysis software. The system was successfully tested in field conditions, measuring soil penetration resistances as a function of depth from 0 to 40 cm at 1 cm intervals. The software allows user to either tabulate the measured quantities or generate maps as soon as data collection has been terminated. The system may also incorporate GPS data to create geo-referenced soil maps. The software enables the user to graph penetration resistances at a specified coordinate. Alternately, soil compaction maps could be generated using data collected from multiple coordinates. The data could be automatically stratified to determine soil compaction distribution at different layers of 5, 10,.…, 40 cm depths. It was concluded that the system tested in this study could be used to assess the soil compaction at topsoil and the randomly distributed hardpan formations just below the common tillage depths, enabling visualization of spatial variability through the imaging software. PMID:27879888

  8. 3D map of the human corneal endothelial cell

    PubMed Central

    He, Zhiguo; Forest, Fabien; Gain, Philippe; Rageade, Damien; Bernard, Aurélien; Acquart, Sophie; Peoc’h, Michel; Defoe, Dennis M.; Thuret, Gilles

    2016-01-01

    Corneal endothelial cells (CECs) are terminally differentiated cells, specialized in regulating corneal hydration and transparency. They are highly polarized flat cells that separate the cornea from the aqueous humor. Their apical surface, in contact with aqueous humor is hexagonal, whereas their basal surface is irregular. We characterized the structure of human CECs in 3D using confocal microscopy of immunostained whole corneas in which cells and their interrelationships remain intact. Hexagonality of the apical surface was maintained by the interaction between tight junctions and a submembraneous network of actomyosin, braced like a drum. Lateral membranes, which support enzymatic pumps, presented complex expansions resembling interdigitated foot processes at the basal surface. Using computer-aided design and drafting software, we obtained a first simplified 3D model of CECs. By comparing their expression with those in epithelial, stromal and trabecular corneal cells, we selected 9 structural or functional proteins for which 3D patterns were specific to CECs. This first 3D map aids our understanding of the morphologic and functional specificity of CECs and could be used as a reference for characterizing future cell therapy products destined to treat endothelial dysfunctions. PMID:27381832

  9. Measurements of 3D slip velocities and plasma column lengths of a gliding arc discharge

    SciTech Connect

    Zhu, Jiajian; Gao, Jinlong; Ehn, Andreas; Aldén, Marcus; Li, Zhongshan E-mail: alpers@ma.tum.de; Moseev, Dmitry; Kusano, Yukihiro; Salewski, Mirko; Alpers, Andreas E-mail: alpers@ma.tum.de; Gritzmann, Peter; Schwenk, Martin

    2015-01-26

    A non-thermal gliding arc discharge was generated at atmospheric pressure in an air flow. The dynamics of the plasma column and tracer particles were recorded using two synchronized high-speed cameras. Whereas the data analysis for such systems has previously been performed in 2D (analyzing the single camera image), we provide here a 3D data analysis that includes 3D reconstructions of the plasma column and 3D particle tracking velocimetry based on discrete tomography methods. The 3D analysis, in particular, the determination of the 3D slip velocity between the plasma column and the gas flow, gives more realistic insight into the convection cooling process. Additionally, with the determination of the 3D slip velocity and the 3D length of the plasma column, we give more accurate estimates for the drag force, the electric field strength, the power per unit length, and the radius of the conducting zone of the plasma column.

  10. 3D Shear Wave Velocity Structure and Seismic Anisotropy beneath Northern Tibet

    NASA Astrophysics Data System (ADS)

    Ceylan, S.; Ni, J. F.; Chen, Y. J.; Tilmann, F.; Yang, Y.; Ritzwoller, M. H.; Sandvol, E. A.

    2010-12-01

    Recent studies have revealed that uplift of the Tibetan plateau may be related to removal of lithospheric mantle and resulting emplacement of hotter, less dense asthenospheric material. In addition to these modes of deformation, other studies have proposed that plateau uplift and crustal thickening have occurred through a process of lateral crustal flow. In order to study the evolution and continental dynamics of the Tibetan plateau, we deployed 74 broadband seismic stations throughout northern Tibet. We have measured the fundamental mode Rayleigh wave phase velocities using the two plane wave approach for periods between 20-143 seconds and verified our results utilizing a two station method. Similar to the fast directions obtained from teleseismic shear wave splitting, our measurements indicate significant (>2%) azimuthal anisotropy throughout the upper mantle down to depths exceeding 250 km, with a dominantly east-west fast direction. Although we observe some variations in fast directions with depth, they are generally consistent (i.e., within 15 degrees). Furthermore, we observe a correlation between fast directions and strikes of major fault zones that may be indicative of vertically coherent deformation within the mantle. Our 3D tomographic models show an uppermost mantle low velocity zone north of Bangong-Nujiang Suture (BNS) in northern Tibet, and a high velocity anomaly extending ~200 km centered on BNS. We suspect that the low velocity zone is due to warmer and thinner lithosphere in the northern Qiangtang and Songpan-Gonzi terranes. At depth, we observe high velocity bodies to the south both in our phase velocity and shear wave velocity maps, possibly indicative of underthrusting Indian lithosphere. Further, high velocity bodies weaken with decreasing depth, which could be alternatively interpreted as delaminating Asian lithosphere. Shear-wave velocities and dispersion curves for northern Tibet are lower than those of Southern Tibet at depths ~80-190 km

  11. Geomorphological maps and 3d models in cave research

    NASA Astrophysics Data System (ADS)

    Ballesteros, Daniel; Jiménez-Sánchez, Montserrat; José Domínguez-Cuesta, María

    2013-04-01

    Cave geomorphological processes and features can be studied by geomorphological maps although topographic maps, aerial photos and GPS are not available. Methods in cave geomorphological mapping are conditioned by cave environment configuration, the need of using speleological techniques, and limitations arising from the projection of the 3D data from the cave to a 2D plan. Some of our previous works in the Cantabrian Mountains and Cantabrian Coast (NW Spain) established the approach of the design of cave geomorphological maps and its legend. Today we are improving the display of cave process combining geomorphological maps and 3d models based on the experience obtained from the research of one cave from the Cantabrian Coast and four caves in the Picos de Europa National Park (funded by GEOCAVE project, Spanish National Parks Agency). The five caves are developed in Carboniferous limestone affected by faults and thrusts. The method of work includes: 1) the elaboration of the cave survey at 1:50 to 1:500 scale; 2) the check of the cave survey of three caves by closed loops; 3) the mapping of cave features based on the performed survey; 4) the 3d modeling of the caves approximating each survey shoot by an octagonal prism; and 5) the implementation and management of the survey and geomorphological map in a Geographic Information System. Based on the survey, the cavities are small caves to deep alpine shafts with 281 to 4,438 m length and up to 738 m deep. The precision of the cave maps only could be estimated in two caves at a cavity scale, displaying both of them a 2.49 % error. The prisms of the 3d model was classified into four groups according to the morphology of the cave passage: 1) canyons, 2) phreatic and epiphreatic tubes, 3) soutirage conduits, 4) mixed forms composed by phreatic and epiphreatic tubes modified by fluvial incision, 5) pitches and 6) irregular passages enlarged strongly by gravity process. According to our previous works geomorphological

  12. 3D Gel Map of Arabidopsis Complex I

    PubMed Central

    Peters, Katrin; Belt, Katharina; Braun, Hans-Peter

    2013-01-01

    Complex I has a unique structure in plants and includes extra subunits. Here, we present a novel study to define its protein constituents. Mitochondria were isolated from Arabidopsis thaliana cell cultures, leaves, and roots. Subunits of complex I were resolved by 3D blue-native (BN)/SDS/SDS-PAGE and identified by mass spectrometry. Overall, 55 distinct proteins were found, seven of which occur in pairs of isoforms. We present evidence that Arabidopsis complex I consists of 49 distinct types of subunits, 40 of which represent homologs of bovine complex I. The nine other subunits represent special proteins absent in the animal linage of eukaryotes, most prominently a group of subunits related to bacterial gamma-type carbonic anhydrases. A GelMap http://www.gelmap.de/arabidopsis-3d-complex-i/ is presented for promoting future complex I research in Arabidopsis thaliana. PMID:23761796

  13. The 3D Space and Spin Velocities of a Gamma-ray Pulsar

    NASA Astrophysics Data System (ADS)

    Romani, Roger W.

    2016-04-01

    PSR J2030+4415 is a LAT-discovered 0.5My-old gamma-ray pulsar with an X-ray synchrotron trail and a rare Halpha bowshock. We have obtained GMOS IFU spectroscopic imaging of this shell, and show a sweep through the remarkable Halpha structure, comparing with the high energy emission. These data provide a unique 3D map of the momentum distribution of the relativistic pulsar wind. This shows that the pulsar is moving nearly in the plane of the sky and that the pulsar wind has a polar component misaligned with the space velocity. The spin axis is shown to be inclined some 95degrees to the Earth line of sight, explaining why this is a radio-quiet, gamma-only pulsar. Intriguingly, the shell also shows multiple bubbles that suggest that the pulsar wind power has varied substantially over the past 500 years.

  14. UCVM: From Supercomputers to Laptops, Querying and Visualizing 3D Seismic Velocity Models

    NASA Astrophysics Data System (ADS)

    Gill, D.; Small, P.; Maechling, P. J.; Jordan, T. H.; Shaw, J. H.; Plesch, A.; Lee, E. J.; Chen, P.; Goulet, C. A.; Taborda, R.; Olsen, K. B.; Callaghan, S.

    2016-12-01

    Three-dimensional (3D) seismic velocity models provide the underlying material properties and structural geometry needed to conduct earthquake ground motion simulations. The Southern California Earthquake Center (SCEC) has developed the Unified Community Velocity Model (UCVM) software package in order to facilitate access to these models. This unique framework provides a comprehensive set of tools for querying and visualizing models, and for generating discretized versions of the models that can be readily used for simulations. We present here UCVM version 16.12.0, which was re-written from scratch in Python 3 in response to an increasing base of users and their needs. This version improves installation and usability. UCVM uses HDF5, MPI4Py, and other open source software to deliver models on many platforms, from a desktop Mac to a large supercomputer. Version v16.12.0 supports the southern California velocity models: CVM-S4, CVM-H 15.1.0, and CVM-S4.26. It also supports the latest model built for central California (CCA). The software framework makes it easy to extract material properties (seismic P and S velocities, and density) for specific data points by providing a common interface through which researchers can query seismic velocity models for a given location and depth. UCVM has a built-in digital elevation model to facilitate queries by depth or elevation. It includes visualization tools that can generate 2D cross-sections, horizontal slices, and basin depth maps; and we recently added the capability to generate VS30 maps and 1D depth profiles as well. The latest version of UCVM includes a new installation script designed to facilitate out-of-the-box plug-and-play usage by all types of users. The script will automatically download all the dependencies and components of UCVM. Since the platform is written in Python, users can import UCVM functions, modules, and classes for use in their own software. UCVM is currently being used to generate 3D regular grids

  15. 3D Shear Velocity Structure of Crust and Upper Mantle in China From Ambient Noise Tomography

    NASA Astrophysics Data System (ADS)

    Sun, X.; Song, X.; Zheng, S.; Yang, Y.; Ritzwoller, M.

    2008-12-01

    We perform ambient noise tomography of China using the data from the China National Seismic Network and global and PASSCAL stations in the region. We obtain Rayleigh wave group and phase velocity dispersion maps at 1 by 1 degree grids for periods from 8 to 60 s. The results are combined with longer-period dispersion maps from global earthquake-based measurements. We then obtain the 3D shear velocity structure of the crust and upper mantle in China by inverting the dispersion curves at each grid. The inversion results show remarkable features for continental China and in particular the Tibetan Plateau (TP), including slow sedimentary layers of all the major basins at the shallow depth, striking east-west contrasts in Moho depth variation and lithosphere thickness, fast (strong) mid-lower crust and mantle lithosphere in major basins surrounding the TP (Tarim, Ordos, and Sichuan) (in contrast, Qaidam Basin does not have such a "deep root"). These strong blocks thus seem to play an important role in confining the deformation of the TP to be a triangular shape. The Moho changes from plateau to Tarim and Sichuan Basins are quite sharp. The India lithosphere seems to terminate around the Bangong Nujiang Suture as indicated by the fast-slow velocity contrast in the mantle lithosphere, but it seems to extend further north under E. Tibet. In northwest TP, slow anomalies extend from crust to great depth (200 km). A widespread, prominent low-velocity zone is observed in midcrust in the TP, which are generally connected and seem to reach to the surface near the margins of the TP, consistent with the notion of the growth of the TP by crustal channel flow and the extrusion of channel flow materials at the topographic fronts.

  16. An industrial light-field camera applied for 3D velocity measurements in a slot jet

    NASA Astrophysics Data System (ADS)

    Seredkin, A. V.; Shestakov, M. V.; Tokarev, M. P.

    2016-10-01

    Modern light-field cameras have found their application in different areas like photography, surveillance and quality control in industry. A number of studies have been reported relatively low spatial resolution of 3D profiles of registered objects along the optical axis of the camera. This article describes a method for 3D velocity measurements in fluid flows using an industrial light-field camera and an alternative reconstruction algorithm based on a statistical approach. This method is more accurate than triangulation when applied for tracking small registered objects like tracer particles in images. The technique was used to measure 3D velocity fields in a turbulent slot jet.

  17. Effects of 3D random correlated velocity perturbations on predicted ground motions

    USGS Publications Warehouse

    Hartzell, S.; Harmsen, S.; Frankel, A.

    2010-01-01

    Three-dimensional, finite-difference simulations of a realistic finite-fault rupture on the southern Hayward fault are used to evaluate the effects of random, correlated velocity perturbations on predicted ground motions. Velocity perturbations are added to a three-dimensional (3D) regional seismic velocity model of the San Francisco Bay Area using a 3D von Karman random medium. Velocity correlation lengths of 5 and 10 km and standard deviations in the velocity of 5% and 10% are considered. The results show that significant deviations in predicted ground velocities are seen in the calculated frequency range (≤1 Hz) for standard deviations in velocity of 5% to 10%. These results have implications for the practical limits on the accuracy of scenario ground-motion calculations and on retrieval of source parameters using higher-frequency, strong-motion data.

  18. Sodium Velocity Maps on Mercury

    NASA Technical Reports Server (NTRS)

    Potter, A. E.; Killen, R. M.

    2011-01-01

    The objective of the current work was to measure two-dimensional maps of sodium velocities on the Mercury surface and examine the maps for evidence of sources or sinks of sodium on the surface. The McMath-Pierce Solar Telescope and the Stellar Spectrograph were used to measure Mercury spectra that were sampled at 7 milliAngstrom intervals. Observations were made each day during the period October 5-9, 2010. The dawn terminator was in view during that time. The velocity shift of the centroid of the Mercury emission line was measured relative to the solar sodium Fraunhofer line corrected for radial velocity of the Earth. The difference between the observed and calculated velocity shift was taken to be the velocity vector of the sodium relative to Earth. For each position of the spectrograph slit, a line of velocities across the planet was measured. Then, the spectrograph slit was stepped over the surface of Mercury at 1 arc second intervals. The position of Mercury was stabilized by an adaptive optics system. The collection of lines were assembled into an images of surface reflection, sodium emission intensities, and Earthward velocities over the surface of Mercury. The velocity map shows patches of higher velocity in the southern hemisphere, suggesting the existence of sodium sources there. The peak earthward velocity occurs in the equatorial region, and extends to the terminator. Since this was a dawn terminator, this might be an indication of dawn evaporation of sodium. Leblanc et al. (2008) have published a velocity map that is similar.

  19. Velocity and Density Models Incorporating the Cascadia Subduction Zone for 3D Earthquake Ground Motion Simulations

    USGS Publications Warehouse

    Stephenson, William J.

    2007-01-01

    INTRODUCTION In support of earthquake hazards and ground motion studies in the Pacific Northwest, three-dimensional P- and S-wave velocity (3D Vp and Vs) and density (3D rho) models incorporating the Cascadia subduction zone have been developed for the region encompassed from about 40.2?N to 50?N latitude, and from about -122?W to -129?W longitude. The model volume includes elevations from 0 km to 60 km (elevation is opposite of depth in model coordinates). Stephenson and Frankel (2003) presented preliminary ground motion simulations valid up to 0.1 Hz using an earlier version of these models. The version of the model volume described here includes more structural and geophysical detail, particularly in the Puget Lowland as required for scenario earthquake simulations in the development of the Seattle Urban Hazards Maps (Frankel and others, 2007). Olsen and others (in press) used the model volume discussed here to perform a Cascadia simulation up to 0.5 Hz using a Sumatra-Andaman Islands rupture history. As research from the EarthScope Program (http://www.earthscope.org) is published, a wealth of important detail can be added to these model volumes, particularly to depths of the upper-mantle. However, at the time of development for this model version, no EarthScope-specific results were incorporated. This report is intended to be a reference for colleagues and associates who have used or are planning to use this preliminary model in their research. To this end, it is intended that these models will be considered a beginning template for a community velocity model of the Cascadia region as more data and results become available.

  20. 3-D seismic velocity and attenuation structures in the geothermal field

    SciTech Connect

    Nugraha, Andri Dian; Syahputra, Ahmad; Fatkhan,; Sule, Rachmat

    2013-09-09

    We conducted delay time tomography to determine 3-D seismic velocity structures (Vp, Vs, and Vp/Vs ratio) using micro-seismic events in the geothermal field. The P-and S-wave arrival times of these micro-seismic events have been used as input for the tomographic inversion. Our preliminary seismic velocity results show that the subsurface condition of geothermal field can be fairly delineated the characteristic of reservoir. We then extended our understanding of the subsurface physical properties through determining of attenuation structures (Qp, Qs, and Qs/Qp ratio) using micro-seismic waveform. We combined seismic velocities and attenuation structures to get much better interpretation of the reservoir characteristic. Our preliminary attanuation structures results show reservoir characterization can be more clearly by using the 3-D attenuation model of Qp, Qs, and Qs/Qp ratio combined with 3-D seismic velocity model of Vp, Vs, and Vp/Vs ratio.

  1. A genetic algorithm particle pairing technique for 3D velocity field extraction in holographic particle image velocimetry

    NASA Astrophysics Data System (ADS)

    Sheng, J.; Meng, H.

    This research explores a novel technique, using Genetic Algorithm Particle Pairing (GAPP) to extract three-dimensional (3D) velocity fields of complex flows. It is motivated by Holographic Particle Image Velocimetry (HPIV), in which intrinsic speckle noise hinders the achievement of high particle density required for conventional correlation methods in extracting 3D velocity fields, especially in regions with large velocity gradients. The GA particle pairing method maps particles recorded at the first exposure to those at the second exposure in a 3D space, providing one velocity vector for each particle pair instead of seeking statistical averaging. Hence, particle pairing can work with sparse seeding and complex 3D velocity fields. When dealing with a large number of particles from two instants, however, the accuracy of pairing results and processing speed become major concerns. Using GA's capability to search a large solution space parallelly, our algorithm can efficiently find the best mapping scenarios among a large number of possible particle pairing schemes. During GA iterations, different pairing schemes or solutions are evaluated based on fluid dynamics. Two types of evaluation functions are proposed, tested, and embedded into the GA procedures. Hence, our Genetic Algorithm Particle Pairing (GAPP) technique is characterized by robustness in velocity calculation, high spatial resolution, good parallelism in handling large data sets, and high processing speed on parallel architectures. It has been successfully tested on a simple HPIV measurement of a real trapped vortex flow as well as a series of numerical experiments. In this paper, we introduce the principle of GAPP, analyze its performance under different parameters, and evaluate its processing speed on different computer architectures.

  2. Reconstruction of divergence-free velocity fields from cine 3D phase-contrast flow measurements.

    PubMed

    Busch, Julia; Giese, Daniel; Wissmann, Lukas; Kozerke, Sebastian

    2013-01-01

    Three-dimensional phase-contrast velocity vector field mapping shows great potential for clinical applications; however measurement inaccuracies may limit the utility and robustness of the technique. While parts of the error in the measured velocity fields can be minimized by background phase estimation in static tissue and magnetic field monitoring, considerable inaccuracies remain. The present work introduces divergence-reduction processing of 3D phase-contrast flow data based on a synergistic combination of normalized convolution and divergence-free radial basis functions. It is demonstrated that this approach effectively addresses erroneous flow for image reconstructions from both fully sampled and undersampled data. Using computer simulations and in vivo data acquired in the aorta of healthy subjects and a stenotic valve patient it is shown that divergence arising from measurement imperfections can be reduced by up to 87% resulting in improved vector field representations. Based on the results obtained it is concluded that integration of the divergence-free condition into postprocessing of vector fields presents an efficient approach to addressing flow field inaccuracies. Copyright © 2012 Wiley Periodicals, Inc.

  3. 3D velocity measurement by a single camera using Doppler phase-shifting holography

    NASA Astrophysics Data System (ADS)

    Ninomiya, Nao; Kubo, Yamato; Barada, Daisuke; Kiire, Tomohiro

    2016-10-01

    In order to understand the details of the flow field in micro- and nano-fluidic devices, it is necessary to measure the 3D velocities under a microscopy. Thus, there is a strong need for the development of a new measuring technique for 3D velocity by a single camera. One solution is the use of holography, but it is well known that the accuracy in the depth direction is very poor for the commonly used in-line holography. At present, the Doppler phase-shifting holography is used for the 3D measurement of an object. This method extracts the signal of a fixed frequency caused by the Doppler beat between the object light and the reference light. It can measure the 3D shape precisely. Here, the frequency of the Doppler beat is determined by the velocity difference between the object light and the reference light. This implies that the velocity of an object can be calculated by the Doppler frequency. In this study, a Japanese 5 yen coin was traversed at a constant speed and its holography has been observed by a high-speed camera. By extracting only the first order diffraction signal at the Doppler frequency, a precise measurement of the shape and the position of a 5 yen coin has been achieved. At the same time, the longitudinal velocity of a 5 yen coin can be measured by the Doppler frequency. Furthermore, the lateral velocities are obtained by particle image velocimetry (PIV) method. A 5 yen coin has been traversed at different angles and its shapes and the 3D velocities have been measured accurately. This method can be applied to the particle flows in the micro- or nano-devices, and the 3D velocities will be measured under microscopes.

  4. Mapping the holes: 3D ISM maps and diffuse X-ray background

    NASA Astrophysics Data System (ADS)

    Lallement, R.; Vergely, J.-L.; Puspitarini, L.; Snowden, S.; Galeazzi, M.; Koutroumpa, D.

    3D maps of Galactic interstellar dust and gas reveal empty regions, including cavities carved by stellar winds and supernovae. Such cavities are often filled with hot gas and are sources of soft X-ray background emission. We discuss the combined analysis of the diffuse soft (0.25 keV) X-ray background and the 3D distribution of nearby (<1 kpc) dust, including studies of shadows cast by nearby clouds in the background. This analysis benefits from recent progress in the estimate of the foreground X-ray emission from the heliosphere. New and past X-ray data are found to be consistent with the maps if the ≃ 100-150 pc wide Local Bubble surrounding the Sun is filled with 106K gas with a pressure 2nT ≃ 10,000 K cm-3. On the other hand, the giant cavity found in the 3rd Galactic quadrant has a weaker volume emission than the LB and is very likely filled to a large extent with warm ionized gas. Its geometry suggests a link with the tilted Gould belt, and a potential mechanism for the formation of the whole structure has been recently proposed. According to it, the local inclination of gas and stars, the velocity pattern and enhanced star formation could have been initiated 60-70 Myr ago when a massive globular cluster crossed the Galactic Plane in the vicinity of the Sun. The destabilization of stellar orbits around the Sun may have generated enhanced asteroid falls of the Cretaceous-Tertiary (KT) extinction events. Additionally, a short gamma ray burst may have occurred in the cluster during the crossing, producing intense ionization and subsequent shock waves leading to the star formations seen today in the form of the giant ionized region and OB associations at its periphery. Gaia measurements of nearby stars and clusters should help shedding light on the local history.

  5. Atrial flutter: from ECG to electroanatomical 3D mapping

    PubMed Central

    PEDRINAZZI, CLAUDIO; DURIN, ORNELLA; MASCIOLI, GIOSUÈ; CURNIS, ANTONIO; RADDINO, RICCARDO; INAMA, GIUSEPPE; DEI CAS, LIVIO

    2006-01-01

    Atrial flutter is a common arrhythmia that may cause significant symptoms, including palpitations, dyspnea, chest pain and even syncope. Frequently it’s possible to diagnose atrial flutter with a 12-lead surface ECG, looking for distinctive waves in leads II, III, aVF, aVL, V1,V2. Puech and Waldo developed the first classification of atrial flutter in the 1970s. These authors divided the arrhythmia into type I and type II. Therefore, in 2001 the European Society of Cardiology and the North American Society of Pacing and Electrophysiology developed a new classification of atrial flutter, based not only on the ECG, but also on the electrophysiological mechanism. New developments in endocardial mapping, including the electroanatomical 3D mapping system, have greatly expanded our understanding of the mechanism of arrhythmias. More recently, Scheinman et al, provided an updated classification and nomenclature. The terms like common, uncommon, typical, reverse typical or atypical flutter are abandoned because they may generate confusion. The authors worked out a new terminology, which differentiates atrial flutter only on the basis of electrophysiological mechanism. PMID:21977266

  6. A recipe for consistent 3D management of velocity data and time-depth conversion using Vel-IO 3D

    NASA Astrophysics Data System (ADS)

    Maesano, Francesco E.; D'Ambrogi, Chiara

    2017-04-01

    3D geological model production and related basin analyses need large and consistent seismic dataset and hopefully well logs to support correlation and calibration; the workflow and tools used to manage and integrate different type of data control the soundness of the final 3D model. Even though seismic interpretation is a basic early step in such workflow, the most critical step to obtain a comprehensive 3D model useful for further analyses is represented by the construction of an effective 3D velocity model and a well constrained time-depth conversion. We present a complex workflow that includes comprehensive management of large seismic dataset and velocity data, the construction of a 3D instantaneous multilayer-cake velocity model, the time-depth conversion of highly heterogeneous geological framework, including both depositional and structural complexities. The core of the workflow is the construction of the 3D velocity model using Vel-IO 3D tool (Maesano and D'Ambrogi, 2017; https://github.com/framae80/Vel-IO3D) that is composed by the following three scripts, written in Python 2.7.11 under ArcGIS ArcPy environment: i) the 3D instantaneous velocity model builder creates a preliminary 3D instantaneous velocity model using key horizons in time domain and velocity data obtained from the analysis of well and pseudo-well logs. The script applies spatial interpolation to the velocity parameters and calculates the value of depth of each point on each horizon bounding the layer-cake velocity model. ii) the velocity model optimizer improves the consistency of the velocity model by adding new velocity data indirectly derived from measured depths, thus reducing the geometrical uncertainties in the areas located far from the original velocity data. iii) the time-depth converter runs the time-depth conversion of any object located inside the 3D velocity model The Vel-IO 3D tool allows one to create 3D geological models consistent with the primary geological constraints (e

  7. Georeferenced LiDAR 3D Vine Plantation Map Generation

    PubMed Central

    Llorens, Jordi; Gil, Emilio; Llop, Jordi; Queraltó, Meritxell

    2011-01-01

    The use of electronic devices for canopy characterization has recently been widely discussed. Among such devices, LiDAR sensors appear to be the most accurate and precise. Information obtained with LiDAR sensors during reading while driving a tractor along a crop row can be managed and transformed into canopy density maps by evaluating the frequency of LiDAR returns. This paper describes a proposed methodology to obtain a georeferenced canopy map by combining the information obtained with LiDAR with that generated using a GPS receiver installed on top of a tractor. Data regarding the velocity of LiDAR measurements and UTM coordinates of each measured point on the canopy were obtained by applying the proposed transformation process. The process allows overlap of the canopy density map generated with the image of the intended measured area using Google Earth®, providing accurate information about the canopy distribution and/or location of damage along the rows. This methodology was applied and tested on different vine varieties and crop stages in two important vine production areas in Spain. The results indicate that the georeferenced information obtained with LiDAR sensors appears to be an interesting tool with the potential to improve crop management processes. PMID:22163952

  8. Georeferenced LiDAR 3D vine plantation map generation.

    PubMed

    Llorens, Jordi; Gil, Emilio; Llop, Jordi; Queraltó, Meritxell

    2011-01-01

    The use of electronic devices for canopy characterization has recently been widely discussed. Among such devices, LiDAR sensors appear to be the most accurate and precise. Information obtained with LiDAR sensors during reading while driving a tractor along a crop row can be managed and transformed into canopy density maps by evaluating the frequency of LiDAR returns. This paper describes a proposed methodology to obtain a georeferenced canopy map by combining the information obtained with LiDAR with that generated using a GPS receiver installed on top of a tractor. Data regarding the velocity of LiDAR measurements and UTM coordinates of each measured point on the canopy were obtained by applying the proposed transformation process. The process allows overlap of the canopy density map generated with the image of the intended measured area using Google Earth(®), providing accurate information about the canopy distribution and/or location of damage along the rows. This methodology was applied and tested on different vine varieties and crop stages in two important vine production areas in Spain. The results indicate that the georeferenced information obtained with LiDAR sensors appears to be an interesting tool with the potential to improve crop management processes.

  9. 3D-Digital soil property mapping by geoadditive models

    NASA Astrophysics Data System (ADS)

    Papritz, Andreas

    2016-04-01

    In many digital soil mapping (DSM) applications, soil properties must be predicted not only for a single but for multiple soil depth intervals. In the GlobalSoilMap project, as an example, predictions are computed for the 0-5 cm, 5-15 cm, 15-30 cm, 30-60 cm, 60-100 cm, 100-200 cm depth intervals (Arrouays et al., 2014). Legacy soil data are often used for DSM. It is common for such datasets that soil properties were measured for soil horizons or for layers at varying soil depth and with non-constant thickness (support). This poses problems for DSM: One strategy is to harmonize the soil data to common depth prior to the analyses (e.g. Bishop et al., 1999) and conduct the statistical analyses for each depth interval independently. The disadvantage of this approach is that the predictions for different depths are computed independently from each other so that the predicted depth profiles may be unrealistic. Furthermore, the error induced by the harmonization to common depth is ignored in this approach (Orton et al. 2016). A better strategy is therefore to process all soil data jointly without prior harmonization by a 3D-analysis that takes soil depth and geographical position explicitly into account. Usually, the non-constant support of the data is then ignored, but Orton et al. (2016) presented recently a geostatistical approach that accounts for non-constant support of soil data and relies on restricted maximum likelihood estimation (REML) of a linear geostatistical model with a separable, heteroscedastic, zonal anisotropic auto-covariance function and area-to-point kriging (Kyriakidis, 2004.) Although this model is theoretically coherent and elegant, estimating its many parameters by REML and selecting covariates for the spatial mean function is a formidable task. A simpler approach might be to use geoadditive models (Kammann and Wand, 2003; Wand, 2003) for 3D-analyses of soil data. geoAM extend the scope of the linear model with spatially correlated errors to

  10. Disaster Prevention Coastal Map Production by MMS & C3D

    NASA Astrophysics Data System (ADS)

    Hatake, Shuhei; Kohori, Yuki; Watanabe, Yasushi

    2016-06-01

    In March 2011, Eastern Japan suffered serious damage of Tsunami caused by a massive earthquake. In 2012, Ministry of Land, Infrastructure and Transport published "Guideline of setting assumed areas of inundation by Tsunami" to establish the conditions of topography data used for simulation of Tsunami. In this guideline, the elevation data prepared by Geographical Survey Institute of Japan and 2m/5m/10m mesh data of NSDI are adopted for land area, while 500m mesh data of Hydrographic and Oceanographic Department of Japan Coast Guard and sea charts are adopted for water area. These data, however, do not have continuity between land area and water area. Therefore, in order to study the possibility of providing information for coastal disaster prevention, we have developed an efficient method to acquire continuous topography over land and water including tidal zone. Land area data are collected by Mobile Mapping System (MMS) and water area depth data are collected by interferometry echo sounder (C3D), and both data are simultaneously acquired on a same boat. Elaborate point cloud data of 1m or smaller are expected to be used for realistic simulation of Tsunami waves going upstream around shoreline. Tests were made in Tokyo Bay (in 2014) and Osaka Bay (in 2015). The purpose the test in Osaka Bay is to make coastal map for disaster prevention as a countermeasure for predicted Nankai massive earthquake. In addition to Tsunami simulation, the continuous data covering land and marine areas are expected to be used effectively for maintenance and repair of aged port and river facilities, maintenance and investigation of dykes, and ecosystem preservation.

  11. 3D mapping and simulation of Geneva Lake environmental data

    NASA Astrophysics Data System (ADS)

    Villard, Roch; Maignan, Michel; Kanevski, Mikhail; Rapin, Francois; Klein, Audrey

    2010-05-01

    The Geneva Lake is the biggest alpine and subalpine lake in central Europe. The depth of this lake is 309 meters and its total volume of water is 89 billions m3. It takes, on average, around twelve years so that waters of the lake are completely brewed. Furthermore the Geneva lake waters are rich in dissolved substances as carbonate, sulfate. The quantity of particles in suspension in the lake, which mainly arrived from the Rhône, is nowadays around height million of tones. The International Commission for the Leman Lake (CIPEL) works about the improvement of the quality of this lake since 1962. In the present study three dimensional environmental data (temperature, oxygen and nitrate) which cover the period from 1954 to 2008, for a total of 27'500 cases are investigated. We are interested to study the evolution of the temperature of the lake because there is an impact on the reproduction of fishes and also because the winter brewing of the water makes the re-oxygenation of deep-water. In order that biological balance is maintained in a lake, there must be enough oxygen in the water. Moreover, we work on nitrate distribution and evolution because contributions in fertilizers cause eutrophication of lake. The data are very numerous when we consider the time series, some of them with more than 300 occurrences, but there are between 2 and 15 data available for spatial cartography. The basic methodology used for the analysis, mapping and simulations of 3D patterns of environmental data is based on geostatistical predictions (family of kriging models) and conditional stochastic simulations. Spatial and temporal variability, 3D monitoring networks changing over time, make this study challenging. An important problem is also to make interpolation/simulations over a long period of time, like ten years. One way used to overcome this problem, consists in using a weighted average of ten variograms during this period. 3D mapping was carried out using environment data for

  12. 3D Color Digital Elevation Map of AFM Sample

    NASA Technical Reports Server (NTRS)

    2008-01-01

    This color image is a three dimensional (3D) view of a digital elevation map of a sample collected by NASA's Phoenix Mars Lander's Atomic Force Microscope (AFM).

    The image shows four round pits, only 5 microns in depth, that were micromachined into the silicon substrate, which is the background plane shown in red. This image has been processed to reflect the levelness of the substrate.

    A Martian particle only one micrometer, or one millionth of a meter, across is held in the upper left pit.

    The rounded particle shown at the highest magnification ever seen from another world is a particle of the dust that cloaks Mars. Such dust particles color the Martian sky pink, feed storms that regularly envelop the planet and produce Mars' distinctive red soil.

    The particle was part of a sample informally called 'Sorceress' delivered to the AFM on the 38th Martian day, or sol, of the mission (July 2, 2008). The AFM is part of Phoenix's microscopic station called MECA, or the Microscopy, Electrochemistry, and Conductivity Analyzer.

    The AFM was developed by a Swiss-led consortium, with Imperial College London producing the silicon substrate that holds sampled particles.

    The Phoenix Mission is led by the University of Arizona, Tucson, on behalf of NASA. Project management of the mission is by NASA's Jet Propulsion Laboratory, Pasadena, Calif. Spacecraft development is by Lockheed Martin Space Systems, Denver.

  13. 3D Color Digital Elevation Map of AFM Sample

    NASA Technical Reports Server (NTRS)

    2008-01-01

    This color image is a three dimensional (3D) view of a digital elevation map of a sample collected by NASA's Phoenix Mars Lander's Atomic Force Microscope (AFM).

    The image shows four round pits, only 5 microns in depth, that were micromachined into the silicon substrate, which is the background plane shown in red. This image has been processed to reflect the levelness of the substrate.

    A Martian particle only one micrometer, or one millionth of a meter, across is held in the upper left pit.

    The rounded particle shown at the highest magnification ever seen from another world is a particle of the dust that cloaks Mars. Such dust particles color the Martian sky pink, feed storms that regularly envelop the planet and produce Mars' distinctive red soil.

    The particle was part of a sample informally called 'Sorceress' delivered to the AFM on the 38th Martian day, or sol, of the mission (July 2, 2008). The AFM is part of Phoenix's microscopic station called MECA, or the Microscopy, Electrochemistry, and Conductivity Analyzer.

    The AFM was developed by a Swiss-led consortium, with Imperial College London producing the silicon substrate that holds sampled particles.

    The Phoenix Mission is led by the University of Arizona, Tucson, on behalf of NASA. Project management of the mission is by NASA's Jet Propulsion Laboratory, Pasadena, Calif. Spacecraft development is by Lockheed Martin Space Systems, Denver.

  14. Representation of 3-D surface orientation by velocity and disparity gradient cues in area MT.

    PubMed

    Sanada, Takahisa M; Nguyenkim, Jerry D; Deangelis, Gregory C

    2012-04-01

    Neural coding of the three-dimensional (3-D) orientation of planar surface patches may be an important intermediate step in constructing representations of complex 3-D surface structure. Spatial gradients of binocular disparity, image velocity, and texture provide potent cues to the 3-D orientation (tilt and slant) of planar surfaces. Previous studies have described neurons in both dorsal and ventral stream areas that are selective for surface tilt based on one or more of these gradient cues. However, relatively little is known about whether single neurons provide consistent information about surface orientation from multiple gradient cues. Moreover, it is unclear how neural responses to combinations of surface orientation cues are related to responses to the individual cues. We measured responses of middle temporal (MT) neurons to random dot stimuli that simulated planar surfaces at a variety of tilts and slants. Four cue conditions were tested: disparity, velocity, and texture gradients alone, as well as all three gradient cues combined. Many neurons showed robust tuning for surface tilt based on disparity and velocity gradients, with relatively little selectivity for texture gradients. Some neurons showed consistent tilt preferences for disparity and velocity cues, whereas others showed large discrepancies. Responses to the combined stimulus were generally well described as a weighted linear sum of responses to the individual cues, even when disparity and velocity preferences were discrepant. These findings suggest that area MT contains a rudimentary representation of 3-D surface orientation based on multiple cues, with single neurons implementing a simple cue integration rule.

  15. Assessment of Altered 3D Blood Characteristics in Aortic Disease by Velocity Distribution Analysis

    PubMed Central

    Garcia, Julio; Barker, Alex J; van Ooij, Pim; Schnell, Susanne; Puthumana, Jyothy; Bonow, Robert O; Collins, Jeremy D; Carr, James C; Markl, Michael

    2014-01-01

    Purpose To test the feasibility of velocity distribution analysis for identifying altered 3D flow characteristics in patients with aortic disease based on 4D flow MRI volumetric analysis. Methods Forty patients with aortic (Ao) dilation (mid ascending aortic diameter MAA=40±7 mm, age=56±17 yr, 11 females) underwent cardiovascular MRI. Four groups were retrospectively defined: mild Ao dilation (n=10, MAA<35 mm); moderate Ao dilation (n=10, 3545 mm); Ao dilation+aortic stenosis AS (n=10, MAA>35 mm and peak velocity >2.5m/s). 3D PC-MR angiograms were computed and used to obtain a 3D segmentation of the aorta which was divided into four segments: root, ascending aorta, arch, descending aorta. Radial chart displays were used to visualize multiple parameters representing segmental changes in the 3D velocity distribution associated with aortic disease. Results Changes in the velocity field and geometry between cohorts resulted in distinct hemodynamic patterns for each aortic segment. Disease progression from mild to Ao dilation+AS resulted in significant differences (P<0.05) in flow parameters across cohorts and increased radial chart size for root and ascending aorta segments by 146% and 99%, respectively. Conclusion Volumetric 4D velocity distribution analysis has the potential to identify characteristic changes in regional blood flow patterns in patients with aortic disease. PMID:25252029

  16. 3D mapping of elastic modulus using shear wave optical micro-elastography

    NASA Astrophysics Data System (ADS)

    Zhu, Jiang; Qi, Li; Miao, Yusi; Ma, Teng; Dai, Cuixia; Qu, Yueqiao; He, Youmin; Gao, Yiwei; Zhou, Qifa; Chen, Zhongping

    2016-10-01

    Elastography provides a powerful tool for histopathological identification and clinical diagnosis based on information from tissue stiffness. Benefiting from high resolution, three-dimensional (3D), and noninvasive optical coherence tomography (OCT), optical micro-elastography has the ability to determine elastic properties with a resolution of ~10 μm in a 3D specimen. The shear wave velocity measurement can be used to quantify the elastic modulus. However, in current methods, shear waves are measured near the surface with an interference of surface waves. In this study, we developed acoustic radiation force (ARF) orthogonal excitation optical coherence elastography (ARFOE-OCE) to visualize shear waves in 3D. This method uses acoustic force perpendicular to the OCT beam to excite shear waves in internal specimens and uses Doppler variance method to visualize shear wave propagation in 3D. The measured propagation of shear waves agrees well with the simulation results obtained from finite element analysis (FEA). Orthogonal acoustic excitation allows this method to measure the shear modulus in a deeper specimen which extends the elasticity measurement range beyond the OCT imaging depth. The results show that the ARFOE-OCE system has the ability to noninvasively determine the 3D elastic map.

  17. 3D mapping of elastic modulus using shear wave optical micro-elastography

    PubMed Central

    Zhu, Jiang; Qi, Li; Miao, Yusi; Ma, Teng; Dai, Cuixia; Qu, Yueqiao; He, Youmin; Gao, Yiwei; Zhou, Qifa; Chen, Zhongping

    2016-01-01

    Elastography provides a powerful tool for histopathological identification and clinical diagnosis based on information from tissue stiffness. Benefiting from high resolution, three-dimensional (3D), and noninvasive optical coherence tomography (OCT), optical micro-elastography has the ability to determine elastic properties with a resolution of ~10 μm in a 3D specimen. The shear wave velocity measurement can be used to quantify the elastic modulus. However, in current methods, shear waves are measured near the surface with an interference of surface waves. In this study, we developed acoustic radiation force (ARF) orthogonal excitation optical coherence elastography (ARFOE-OCE) to visualize shear waves in 3D. This method uses acoustic force perpendicular to the OCT beam to excite shear waves in internal specimens and uses Doppler variance method to visualize shear wave propagation in 3D. The measured propagation of shear waves agrees well with the simulation results obtained from finite element analysis (FEA). Orthogonal acoustic excitation allows this method to measure the shear modulus in a deeper specimen which extends the elasticity measurement range beyond the OCT imaging depth. The results show that the ARFOE-OCE system has the ability to noninvasively determine the 3D elastic map. PMID:27762276

  18. 3D P-Wave Velocity Structure of the Deep Galicia Rifted Margin

    NASA Astrophysics Data System (ADS)

    Bayrakci, Gaye; Minshull, Timothy; Davy, Richard; Sawyer, Dale; Klaeschen, Dirk; Papenberg, Cord; Reston, Timothy; Shillington, Donna; Ranero, Cesar

    2015-04-01

    The combined wide-angle reflection-refraction and multi-channel seismic (MCS) experiment, Galicia 3D, was carried out in 2013 at the Galicia rifted margin in the northeast Atlantic Ocean, west of Spain. The main geological features within the 64 by 20 km (1280 km²) 3D box investigated by the survey are the peridotite ridge (PR), the fault bounded, rotated basement blocks and the S reflector, which has been interpreted to be a low angle detachment fault. 44 short period four-component ocean bottom seismometers and 28 ocean bottom hydrophones were deployed in the 3D box. 3D MCS profiles sampling the whole box were acquired with two airgun arrays of 3300 cu.in. fired alternately every 37.5 m. We present the results from 3D first-arrival time tomography that constrains the P-wave velocity in the 3D box, for the entire depth sampled by reflection data. Results are validated by synthetic tests and by the comparison with Galicia 3D MCS lines. The main outcomes are as follows: 1- The 3.5 km/s iso-velocity contour mimics the top of the acoustic basement observed on MCS profiles. Block bounding faults are imaged as velocity contrasts and basement blocks exhibit 3D topographic variations. 2- On the southern profiles, the top of the PR rises up to 5.5 km depth whereas, 20 km northward, its basement expression (at 6.5 km depth) nearly disappears. 3- The 6.5 km/s iso-velocity contour matches the topography of the S reflector where the latter is visible on MCS profiles. Within a depth interval of 0.6 km (in average), velocities beneath the S reflector increase from 6.5 km/s to 7 km/s, which would correspond to a decrease in the degree of serpentinization from ~45 % to ~30 % if these velocity variations are caused solely by variations in hydration. At the intersections between the block bounding normal faults and the S reflector, this decrease happens over a larger depth interval (> 1 km), suggesting that faults act as conduit for the water flow in the upper mantle.

  19. 3D P-Wave Velocity Structure of the Deep Galicia Rifted Margin

    NASA Astrophysics Data System (ADS)

    Bayrakci, G.; Minshull, T. A.; Davy, R. G.; Sawyer, D. S.; Klaeschen, D.; Papenberg, C. A.; Reston, T. J.; Shillington, D. J.; Ranero, C. R.

    2014-12-01

    The combined wide-angle reflection-refraction and multi-channel seismic (MCS) experiment, Galicia 3D, was carried out in 2013 at the Galicia rifted margin in the northeast Atlantic Ocean, west of Spain. The main geological features within the 64 by 20 km (1280 km²) 3D box investigated by the survey are the peridotite ridge (PR), the fault bounded, rotated basement blocks and the S reflector, which has been interpreted to be a low angle detachment fault. 44 short period four-component ocean bottom seismometers and 28 ocean bottom hydrophones were deployed in the 3D box. 3D MCS profiles sampling the whole box were acquired with two airgun arrays of 3300 cu.in. fired alternately every 37.5 m. We present the results from 3D first-arrival time tomography that constrains the P-wave velocity in the 3D box, for the entire depth sampled by reflection data. Results are validated by synthetic tests and by the comparison with Galicia 3D MCS lines. The main outcomes are as follows: 1- The 3.5 km/s iso-velocity contour mimics the top of the acoustic basement observed on MCS profiles. Block bounding faults are imaged as velocity contrasts and basement blocks exhibit 3D topographic variations. 2- On the southern profiles, the top of the PR rises up to 5.5 km depth whereas, 20 km northward, its basement expression (at 6.5 km depth) nearly disappears. 3- The 6.5 km/s iso-velocity contour matches the topography of the S reflector where the latter is visible on MCS profiles. Within a depth interval of 0.6 km (in average), velocities beneath the S reflector increase from 6.5 km/s to 7 km/s, which would correspond to a decrease in the degree of serpentinization from ~45 % to ~30 % if these velocity variations are caused solely by variations in hydration. At the intersections between the block bounding normal faults and the S reflector, this decrease happens over a larger depth interval (> 1 km), suggesting that faults act as conduit for the water flow in the upper mantle.

  20. 3-D Mapping of the Galactic Nuclear Region

    NASA Astrophysics Data System (ADS)

    Wang, Q. Daniel

    The Galactic center of our Galaxy provides an excellent laboratory to study the star formation mode and history as well as the structure and dynamics of stars and gas under an extreme galactic nuclear environment. We propose a comprehensive data analysis program to investigate the 3-D properties of the region enclosed by the Central Molecular Zone of the Galaxy. We will capitalize on an extensive data set now available from Planck, Herschel, Spitzer, and Hubble Space Telescopes, as well as the Large Millimeter Telescope and other ground-based facilities. This data set provides sensitive high-resolution probes of the region over the millimeter to nearIR wavelength range. The data set, together with dedicated state-of-art analysis tools that we have been developing, will enable us to obtain (1) the first full-spacing millimeter dust emission image of the region at a resolution better than 10 arcseconds (FWHM), (2) the column density, temperature, and opacity spectral index distributions of dusty gas; (3) the mapping of dust extinction toward individual stars; (4) the line-of-sight locations of individual dense clouds, (5) the global spatial distribution and formation history of stars, and (6) the characterization of environment effects on stellar and gas dynamics in the region. The combined analysis of the dust emission and extinction will represent a major step forward in determining the properties of the dusty gas as well as its effect on the stellar light observations of the region. This body of work will likely have strong implications for our understanding the stellar and gas properties in other galactic nuclei and their role in regulating the evolution of galaxies as whole.

  1. Cooperative 3D and 2D mapping with heterogenous ground robots

    NASA Astrophysics Data System (ADS)

    Rogers, John G., III; Baran, David; Stump, Ethan; Young, Stuart; Christensen, Henrik I.

    2012-06-01

    Efficient and accurate 3D mapping is desirable in disaster recovery as well as urban warfare situations. The speed with which these maps can be generated is vital to provide situational awareness in these situations. A team of mobile robots can work together to build maps more quickly. We present an algorithm by which a team of mobile robots can merge 2D and 3D measurements to build a 3D map, together with experiments performed at a military test facility.

  2. Effect of postural changes on 3D joint angular velocity during starting block phase.

    PubMed

    Slawinski, Jean; Dumas, Raphaël; Cheze, Laurence; Ontanon, Guy; Miller, Christian; Mazure-Bonnefoy, Alice

    2013-01-01

    Few studies have focused on the effect of posture during sprint start. The aim of this study was to measure the effect of the modification of horizontal distance between the blocks during sprint start on three dimensional (3D) joint angular velocity. Nine trained sprinters started using three different starting positions (bunched, medium and elongated). They were equipped with 63 passive reflective markers, and an opto-electronic Motion Analysis system was used to collect the 3D marker trajectories. During the pushing phase on the blocks, norm of the joint angular velocity (NJAV), 3D Euler angular velocity (EAV) and pushing time on the blocks were calculated. The results demonstrated that the decrease of the block spacing induces an opposite effect on the angular velocity of joints of the lower and the upper limbs. The NJAV of the upper limbs is greater in the bunched start, whereas the NJAV of the lower limbs is smaller. The modifications of NJAV were due to a combination of the movement of the joints in the different degrees of freedom. The medium start seems to be the best compromise because it leads, in a short pushing time, to a combination of optimal joint velocities for upper and lower segments.

  3. Separate Perceptual and Neural Processing of Velocity- and Disparity-Based 3D Motion Signals.

    PubMed

    Joo, Sung Jun; Czuba, Thaddeus B; Cormack, Lawrence K; Huk, Alexander C

    2016-10-19

    Although the visual system uses both velocity- and disparity-based binocular information for computing 3D motion, it is unknown whether (and how) these two signals interact. We found that these two binocular signals are processed distinctly at the levels of both cortical activity in human MT and perception. In human MT, adaptation to both velocity-based and disparity-based 3D motions demonstrated direction-selective neuroimaging responses. However, when adaptation to one cue was probed using the other cue, there was no evidence of interaction between them (i.e., there was no "cross-cue" adaptation). Analogous psychophysical measurements yielded correspondingly weak cross-cue motion aftereffects (MAEs) in the face of very strong within-cue adaptation. In a direct test of perceptual independence, adapting to opposite 3D directions generated by different binocular cues resulted in simultaneous, superimposed, opposite-direction MAEs. These findings suggest that velocity- and disparity-based 3D motion signals may both flow through area MT but constitute distinct signals and pathways.

  4. The terminal velocity of volcanic particles with shape obtained from 3D X-ray microtomography

    NASA Astrophysics Data System (ADS)

    Dioguardi, Fabio; Mele, Daniela; Dellino, Pierfrancesco; Dürig, Tobias

    2017-01-01

    New experiments of falling volcanic particles were performed in order to define terminal velocity models applicable in a wide range of Reynolds number Re. Experiments were carried out with fluids of various viscosities and with particles that cover a wide range of size, density and shape. Particle shape, which strongly influences fluid drag, was measured in 3D by High-resolution X-ray microtomography, by which sphericity Φ3D and fractal dimension D3D were obtained. They are easier to measure and less operator dependent than the 2D shape parameters used in previous papers. Drag laws that make use of the new 3D parameters were obtained by fitting particle data to the experiments, and single-equation terminal velocity models were derived. They work well both at high and low Re (3 × 10- 2 < Re < 104), while earlier formulations made use of different equations at different ranges of Re. The new drag laws are well suited for the modelling of particle transportation both in the eruptive column, where coarse and fine particles are present, and also in the distal part of the umbrella region, where fine ash is involved in the large-scale domains of atmospheric circulation. A table of the typical values of Φ3D and D3D of particles from known plinian, subplinian and ash plume eruptions is presented. Graphs of terminal velocity as a function of grain size are finally proposed as tools to help volcanologists and atmosphere scientists to model particle transportation of explosive eruptions.

  5. GAM & RF for 3D mapping of multinomial peat properties.

    NASA Astrophysics Data System (ADS)

    Poggio, Laura; Gimona, Alessandro; Aalders, Inge; Morrice, Jane; Hough, Rupert

    2013-04-01

    Different statistical methods have been proposed for fitting the empirical quantitative function linking the soil information to the scorpan factors, while taking into account the spatial structure of the data . Regression kriging extends the methods of kriging and co-kriging and it has been further extended by the use of GAMs (Generalized Additive Models) with the estimation of uncertainty. When multinomial data are modelled, advanced non-parametric methods, such as CART (Classification and Regression Tree), can be used. CARTs have been used widely to estimate soil properties. Bagging trees and Random Forest (RF) approaches have among the best performances among CART methods. CARTs have been used in DSM applications, While RF have often been used in ecological modelling, fewer examples exist in DSM, such as soil erosion occurrence, soil types prediction and soil organic carbon content. In this paper we propose a methodology to map multinomial peat properties in 3D space with a combination of GAMs and RF. The methodology was applied to the humification (according to the VonPost classification) classes in a bog (18 km2) in the north-east of Scotland. A large survey campaign was carried out in 1955 and humification information were collected at 125 points. In order to integrate the information from the GAM in the RT, a series of binary GAMs were fitted using DEM-derived information as covariates. The binary GAMs were fitted assigning 1 if the class considered was present at the location, 0 if the class considered was absent. The probability predictions resulting from the binary GAMs, were included in the pool of covariates used for the RT together with other ancillary covariates. The model diagnostics had a fair to good agreement between measured and modelled values (K statistics). The probability predictions resulting from the binary GAMs proved to be important variables, increasing the agreement of the model. The obtained spatial distribution of values on the

  6. 3-D Velocity Model of the Coachella Valley, Southern California Based on Explosive Shots from the Salton Seismic Imaging Project

    NASA Astrophysics Data System (ADS)

    Persaud, P.; Stock, J. M.; Fuis, G. S.; Hole, J. A.; Goldman, M.; Scheirer, D. S.

    2014-12-01

    We have analyzed explosive shot data from the 2011 Salton Seismic Imaging Project (SSIP) across a 2-D seismic array and 5 profiles in the Coachella Valley to produce a 3-D P-wave velocity model that will be used in calculations of strong ground shaking. Accurate maps of seismicity and active faults rely both on detailed geological field mapping and a suitable velocity model to accurately locate earthquakes. Adjoint tomography of an older version of the SCEC 3-D velocity model shows that crustal heterogeneities strongly influence seismic wave propagation from moderate earthquakes (Tape et al., 2010). These authors improve the crustal model and subsequently simulate the details of ground motion at periods of 2 s and longer for hundreds of ray paths. Even with improvements such as the above, the current SCEC velocity model for the Salton Trough does not provide a match of the timing or waveforms of the horizontal S-wave motions, which Wei et al. (2013) interpret as caused by inaccuracies in the shallow velocity structure. They effectively demonstrate that the inclusion of shallow basin structure improves the fit in both travel times and waveforms. Our velocity model benefits from the inclusion of known location and times of a subset of 126 shots detonated over a 3-week period during the SSIP. This results in an improved velocity model particularly in the shallow crust. In addition, one of the main challenges in developing 3-D velocity models is an uneven stations-source distribution. To better overcome this challenge, we also include the first arrival times of the SSIP shots at the more widely spaced Southern California Seismic Network (SCSN) in our inversion, since the layout of the SSIP is complementary to the SCSN. References: Tape, C., et al., 2010, Seismic tomography of the Southern California crust based on spectral-element and adjoint methods: Geophysical Journal International, v. 180, no. 1, p. 433-462. Wei, S., et al., 2013, Complementary slip distributions

  7. Modeling and validation of a 3D velocity structure for the Santa Clara Valley, California, for seismic-wave simulations

    USGS Publications Warehouse

    Hartzell, S.; Harmsen, S.; Williams, R.A.; Carver, D.; Frankel, A.; Choy, G.; Liu, P.-C.; Jachens, R.C.; Brocher, T.M.; Wentworth, C.M.

    2006-01-01

    A 3D seismic velocity and attenuation model is developed for Santa Clara Valley, California, and its surrounding uplands to predict ground motions from scenario earthquakes. The model is developed using a variety of geologic and geophysical data. Our starting point is a 3D geologic model developed primarily from geologic mapping and gravity and magnetic surveys. An initial velocity model is constructed by using seismic velocities from boreholes, reflection/refraction lines, and spatial autocorrelation microtremor surveys. This model is further refined and the seismic attenuation is estimated through waveform modeling of weak motions from small local events and strong-ground motion from the 1989 Loma Prieta earthquake. Waveforms are calculated to an upper frequency of 1 Hz using a parallelized finite-difference code that utilizes two regions with a factor of 3 difference in grid spacing to reduce memory requirements. Cenozoic basins trap and strongly amplify ground motions. This effect is particularly strong in the Evergreen Basin on the northeastern side of the Santa Clara Valley, where the steeply dipping Silver Creek fault forms the southwestern boundary of the basin. In comparison, the Cupertino Basin on the southwestern side of the valley has a more moderate response, which is attributed to a greater age and velocity of the Cenozoic fill. Surface waves play a major role in the ground motion of sedimentary basins, and they are seen to strongly develop along the western margins of the Santa Clara Valley for our simulation of the Loma Prieta earthquake.

  8. Sector mapping method for 3D detached retina visualization.

    PubMed

    Zhai, Yi-Ran; Zhao, Yong; Zhong, Jie; Li, Ke; Lu, Cui-Xin; Zhang, Bing

    2016-10-01

    A new sphere-mapping algorithm called sector mapping is introduced to map sector images to the sphere of an eyeball. The proposed sector-mapping algorithm is evaluated and compared with the plane-mapping algorithm adopted in previous work. A simulation that maps an image of concentric circles to the sphere of the eyeball and an analysis of the difference in distance between neighboring points in a plane and sector were used to compare the two mapping algorithms. A three-dimensional model of a whole retina with clear retinal detachment was generated using the Visualization Toolkit software. A comparison of the mapping results shows that the central part of the retina near the optic disc is stretched and its edges are compressed when the plane-mapping algorithm is used. A better mapping result is obtained by the sector-mapping algorithm than by the plane-mapping algorithm in both the simulation results and real clinical retinal detachment three-dimensional reconstruction.

  9. Stratified shear flow in an inclined duct: near-instantaneous 3D velocity and density measurements

    NASA Astrophysics Data System (ADS)

    Partridge, Jamie; Lefauve, Adrien; Dalziel, Stuart; Linden, Paul

    2016-11-01

    We present results from a new experimental setup to study the exchange flow in an inclined square duct between two reservoirs containing fluids of different densities. This system can exhibit stratified shear wave motions, and has a distinct parameter threshold above which turbulence is triggered and progressively fills a larger fraction of the duct. To probe these intrinsically 3D flows, we introduce a new setup in which a traversing laser sheet allows us to obtain near-instantaneous 3D velocity and density fields. Three components of velocity are measured on successive 2D planes using stereo particle image velocimetry (PIV) with density information obtained simultaneously using laser induced fluorescence (LIF). Supported by EPSRC Programme Grant EP/K034529/1 entitled "Mathematical Underpinnings of Stratified Turbulence".

  10. Locating earthquakes in west Texas oil fields using 3-D anisotropic velocity models

    SciTech Connect

    Hua, Fa; Doser, D.; Baker, M. . Dept. of Geological Sciences)

    1993-02-01

    Earthquakes within the War-Wink gas field, Ward County, Texas, that have been located with a 1-D velocity model occur near the edges and top of a naturally occurring overpressured zone. Because the War-Wink field is a structurally controlled anticline with significant velocity anisotropy associated with the overpressured zone and finely layered evaporites, the authors have attempted to re-locate earthquakes using a 3-D anisotropic velocity model. Preliminary results with this model give the unsatisfactory result that many earthquakes previously located at the top of the overpressured zone (3-3.5 km) moved into the evaporites (1-1.5 km) above the field. They believe that this result could be caused by: (1) aliasing the velocity model; or (2) problems in determining the correct location minima when several minima exist. They are currently attempting to determine which of these causes is more likely for the unsatisfactory result observed.

  11. A 3D radiative transfer framework . VII. Arbitrary velocity fields in the Eulerian frame

    NASA Astrophysics Data System (ADS)

    Seelmann, A. M.; Hauschildt, P. H.; Baron, E.

    2010-11-01

    Aims: A solution of the radiative-transfer problem in 3D with arbitrary velocity fields in the Eulerian frame is presented. The method is implemented in our 3D radiative transfer framework and used in the PHOENIX/3D code. It is tested by comparison to our well-tested 1D co-moving frame radiative transfer code, where the treatment of a monotonic velocity field is implemented in the Lagrangian frame. The Eulerian formulation does not need much additional memory and is useable on state-of-the-art computers, even large-scale applications with 1000's of wavelength points are feasible. Methods: In the Eulerian formulation of the problem, the photon is seen by the atom at a Doppler-shifted wavelength depending on its propagation direction, which leads to a Doppler-shifted absorption and emission. This leads to a different source function and a different Λ^* operator in the radiative transfer equations compared to the static case. Results: The results of the Eulerian 3D spherical calculations are compared to our well-tested 1D Lagrangian spherical calculations, the agreement is, up to vmax = 1 × 103 km s-1 very good. Test calculation in other geometries are also shown.

  12. 3D synthesized areal shot-record residual migration velocity analysis

    NASA Astrophysics Data System (ADS)

    Yang, Qi-Qiang; Zhang, Shulun; Sun, Peiyong; Wu, Yanhui; Zhou, Ruihong

    2009-03-01

    Velocity analysis is always a critical step during seismic processing due to its influence on the final quality of the data. Over the last few decades, residual migration velocity analysis (RMVA) as a popular tool to estimate a velocity-depth model has been an area of active research. Previous works on the RMVA have been computationally intensive to be applied in 3D cases. In this paper, we propose a 3D synthesized areal shot-record RMVA method with controlled illumination. In the scheme, the interval velocities are updated using the residual analysis in the plane wave domain only with the layer-stripping residual correction rather than the layer-stripping prestack depth migration (PSDM). The synthesized areal shot-record migration is performed in the plane wave domain. This is consistent with the condition of the velocity correction formulae. The common image gather (CIG) sections can be extracted directly from the migrated data. To avoid the propagation distortion of the plane wave source wavefield through an inhomogeneous subsurface, the controlled illumination technique is employed. Results on both synthetic data and field data demonstrate that the method is practical and efficient.

  13. Arctic Research Mapping Application (ARMAP): 2D Maps and 3D Globes Support Arctic Science

    NASA Astrophysics Data System (ADS)

    Johnson, G.; Gaylord, A. G.; Brady, J. J.; Cody, R. P.; Aguilar, J. A.; Dover, M.; Garcia-Lavigne, D.; Manley, W.; Score, R.; Tweedie, C. E.

    2007-12-01

    The Arctic Research Mapping Application (ARMAP) is a suite of online services to provide support of Arctic science. These services include: a text based online search utility, 2D Internet Map Server (IMS); 3D globes and Open Geospatial Consortium (OGC) Web Map Services (WMS). With ARMAP's 2D maps and 3D globes, users can navigate to areas of interest, view a variety of map layers, and explore U.S. Federally funded research projects. Projects can be queried by location, year, funding program, discipline, and keyword. Links take you to specific information and other web sites associated with a particular research project. The Arctic Research Logistics Support Service (ARLSS) database is the foundation of ARMAP including US research funded by the National Science Foundation, National Aeronautics and Space Administration, National Oceanic and Atmospheric Administration, and the United States Geological Survey. Avoiding a duplication of effort has been a primary objective of the ARMAP project which incorporates best practices (e.g. Spatial Data Infrastructure and OGC standard web services and metadata) and off the shelf technologies where appropriate. The ARMAP suite provides tools for users of various levels of technical ability to interact with the data by importing the web services directly into their own GIS applications and virtual globes; performing advanced GIS queries; simply printing maps from a set of predefined images in the map gallery; browsing the layers in an IMS; or by choosing to "fly to" sites using a 3D globe. With special emphasis on the International Polar Year (IPY), ARMAP has targeted science planners, scientists, educators, and the general public. In sum, ARMAP goes beyond a simple map display to enable analysis, synthesis, and coordination of Arctic research. ARMAP may be accessed via the gateway web site at http://www.armap.org.

  14. UCVM: An Open Source Framework for 3D Velocity Model Research

    NASA Astrophysics Data System (ADS)

    Gill, D.; Maechling, P. J.; Jordan, T. H.; Plesch, A.; Taborda, R.; Callaghan, S.; Small, P.

    2013-12-01

    Three-dimensional (3D) seismic velocity models provide fundamental input data to ground motion simulations, in the form of structured or unstructured meshes or grids. Numerous models are available for California, as well as for other parts of the United States and Europe, but models do not share a common interface. Being able to interact with these models in a standardized way is critical in order to configure and run 3D ground motion simulations. The Unified Community Velocity Model (UCVM) software, developed by researchers at the Southern California Earthquake Center (SCEC), is an open source framework designed to provide a cohesive way to interact with seismic velocity models. We describe the several ways in which we have improved the UCVM software over the last year. We have simplified the UCVM installation process by automating the installation of various community codebases, improving the ease of use.. We discuss how UCVM software was used to build velocity meshes for high-frequency (4Hz) deterministic 3D wave propagation simulations, and how the UCVM framework interacts with other open source resources, such as NetCDF file formats for visualization. The UCVM software uses a layered software architecture that transparently converts geographic coordinates to the coordinate systems used by the underlying velocity models and supports inclusion of a configurable near-surface geotechnical layer, while interacting with the velocity model codes through their existing software interfaces. No changes to the velocity model codes are required. Our recent UCVM installation improvements bundle UCVM with a setup script, written in Python, which guides users through the process that installs the UCVM software along with all the user-selectable velocity models. Each velocity model is converted into a standardized (configure, make, make install) format that is easily downloaded and installed via the script. UCVM is often run in specialized high performance computing (HPC

  15. 3-D Depth Interval Velocity Model Analysis and Interpretation of the Nankai Trough Margin (Southwest Japan).

    NASA Astrophysics Data System (ADS)

    Costa Pisani, P.; Kramer, G.; Moore, G. F.; Tobin, H. J.

    2005-12-01

    The 3-D Muroto seismic transect images the Nankai Trough margin south of Shikoku island, Japan, where the Philippine Sea plate subducts at a rate of 2-4 cm/y beneath the accretionary prism. The ODP drill sites of Legs 190-196 show the basaltic basement of the incoming plate overlain by the Shikoku Basin Lower Miocene-Lower Pleistocene hemipelagic mudstone, and the Pleistocene-Recent Nankai Trough turbidites. A geological meaningful interval velocity volume has been modeled using 3-D pre-stack depth migration (PSDM) calibrating the seismic volume with known depths at the drill sites, and extended to the entire seaward part of the Muroto transect. Our final PSDM velocity gradients closely resemble the drill holes logging and core velocities. Hence, the PSDM velocity field is representative of the "in-situ" velocities. In the trench area, the velocities increase with depth within the turbidites (1525-1580 m/s), as expected for a section with a normal compaction trend (decreasing porosity with depth). In the Upper Shikoku Basin Facies (USBF) hemipelagic unit (1580-1860 m/s), the P-wave velocity increases downhole although the porosity remains approximately constant within the entire unit. A conclusion of Leg 190 is that velocity in this interval can be controlled by cementation. In the upper part of the Lower Shikoku Basin Facies (LSBF) hemipelagic unit (1860-1920 m/s) the velocity increases until about 50-60 m below the top of LSBF, where a velocity inversion of about 50 m/s is recorded. The velocity inversion can be connected to an anomalously high fluid content at that level in the LSBF unit. We interpret this depth (5200 m below the sea level) as the stratigraphic equivalent of the decollement that occurs landward in the imbricate thrust zone. Below the velocity inversion zone, the PSDM velocities increase again with depth in the rest of the LSBF and the Volcaniclastic units (1870-2160 m/s). This is in agreement with a decrease in porosity versus depth in the

  16. Use Models like Maps in a 3D SDI

    NASA Astrophysics Data System (ADS)

    Gietzel, Jan; Gabriel, Paul; Schaeben, Helmut; Le, Hai Ha

    2013-04-01

    Digital geological applications have become 3D up to 4D modelling of the underground. The modellers are working very heterogeneously in terms of its applied software systems. On the other hand the 3D/4D modelling of the subsurface has become part of the geological surveys all around the world. This implies a wide spread group of users working in different institutions aiming to work together on one subsurface model. Established 3D/4D-modelling software systems mainly use a file based approach to store data, which is in a high contrast to the needs of a central administrated and network based data transfer approach. At the department of geophysics and geo information sciences at the Technical University Bergakademie Freiberg, the GST system for managing 3D and 4D geosciences data in a databases system was developed and is now continued by the company GiGa infosystems. The GST-Framework includes a storage engine, a web service for sharing and a number of client software including a browser based client interface for visualising, accessing and manipulating geological CAD data. Including a check out system GST supports multi user editing on huge models, designed to manage seamless high resolution models of the subsurface. While working on complex projects various software is used for the creation of the model, the prediction of properties and final simulation. A problem rising from the use of several software is the interoperability of the models. Due to conversion errors different working groups use mainly different raw data. This results in different models, which have to be corrected with additional effort. One platform sharing the models is strongly demanded. One high potential solution is a centralized and software independent storage, which will be presented.

  17. 3D P-wave Velocity Structure Beneath the Eastern Canadian Shield and Northern Appalachian Region

    NASA Astrophysics Data System (ADS)

    Villemaire, M.; Darbyshire, F. A.; Bastow, I. D.

    2010-12-01

    Previous seismic studies of the upper mantle of the Canadian Shield have indicated some low-velocity anomalies within the cratonic lithosphere in the Abitibi-Grenville region. The lack of seismograph station coverage to the east and south-east of the studied area prevented definition of the 3D geometry of these anomalies. Adding new stations from the province of Quebec and from the northeastern United States allows us to carry out new studies of the P-wave velocity structure of the upper mantle, in order to better understand the complexity of the region and the interaction of the lithosphere with possible thermal anomalies in the underlying mantle. We analysed teleseismic P wave arrivals from almost 200 earthquakes, recorded at 45 stations deployed across the provinces of Quebec and Ontario and across the northeastern US. The relative arrival times of teleseismic P waves across the array were measured using the cross-correlation method of VanDecar & Crosson (1990). The travel time data were then inverted to estimate the 3D P-wave velocity structure beneath the region, using the least-squares tomographic inversion code of VanDecar (1991). The model shows some interesting features. We see a diffuse low-velocity structure beneath New-England that extends to at least 500 km depth, and that may be related to the Appalachian Mountain belt. There is also a linear low-velocity structure, flanked by higher velocities, perpendicular to the Grenville Front, and along the Ottawa Valley. We interpret this feature as a mantle signature of the Great Meteor Hotspot track. We have looked for systematic differences between the mantle underlying the Archean Superior craton and the Proterozoic Grenville Province but did not find a significant difference in the upper mantle. We investigate the role of thermal and compositional effects to interpret the velocity models and to relate the patterns of the anomalies to past and present tectonic structures.

  18. Prediction of velocity distribution from pore structure in 3D porous media

    NASA Astrophysics Data System (ADS)

    AlAdwani, M. S. K. F. S.; De Anna, P.; Juanes, R.

    2016-12-01

    Fluid flow and particle transport through porous media are determined by the geometry of the host medium itself. Despite the fundamental importance of the velocity distribution in controlling early-time and late-time transport properties (e.g., early breakthrough and superdiffusive spreading), direct relations linking velocity distribution with the statistics of pore structure in 3D porous media have not been established yet. High velocities are controlled by the formation of channels, while low velocities are dominated by stagnation zones. Recent studies have proposed phenomenological models for the distribution of high velocities including stretched exponential and power-exponential distributions but without an underlying mechanistic or statistical physics theory. Here, we investigate the relationship between the structure of the host medium and the resulting fluid flow and particle transport properties. We extend recent work on simple 2D media consisting of circular nonoverlapping disks, and consider 3D random packs of spheres. This disordered spherical-pack arrangement can be characterized geometrically by constructing a Delaunay triangulation of the disk centers: each tetrahedron defines a pore body and each triangular face defines a pore throat. We simulate flow in the exact pore geometry at low Reynolds numbers by solving the Stokes equations and imposing a no-slip boundary condition at the boundary of each sphere. We develop a theoretical model to explain the observed distribution of the low velocities. We understand flow through the porous medium as being controlled by the pore throats, and we conceptualize flow through each pore throat as a Hagen-Poiseuille flow through a pipe of irregular shape controlled by its area and its shape factor. Despite its simplicity, the analytical predictions from the model agree well with high-resolution simulations, both in terms of velocity distribution and ensuing anomalous particle spreading.

  19. Ultrasonic 3-D Vector Flow Method for Quantitative In Vivo Peak Velocity and Flow Rate Estimation.

    PubMed

    Holbek, Simon; Ewertsen, Caroline; Bouzari, Hamed; Pihl, Michael Johannes; Hansen, Kristoffer Lindskov; Stuart, Matthias Bo; Thomsen, Carsten; Nielsen, Michael Bachmann; Jensen, Jorgen Arendt

    2017-03-01

    Current clinical ultrasound (US) systems are limited to show blood flow movement in either 1-D or 2-D. In this paper, a method for estimating 3-D vector velocities in a plane using the transverse oscillation method, a 32×32 element matrix array, and the experimental US scanner SARUS is presented. The aim of this paper is to estimate precise flow rates and peak velocities derived from 3-D vector flow estimates. The emission sequence provides 3-D vector flow estimates at up to 1.145 frames/s in a plane, and was used to estimate 3-D vector flow in a cross-sectional image plane. The method is validated in two phantom studies, where flow rates are measured in a flow-rig, providing a constant parabolic flow, and in a straight-vessel phantom ( ∅=8 mm) connected to a flow pump capable of generating time varying waveforms. Flow rates are estimated to be 82.1 ± 2.8 L/min in the flow-rig compared with the expected 79.8 L/min, and to 2.68 ± 0.04 mL/stroke in the pulsating environment compared with the expected 2.57 ± 0.08 mL/stroke. Flow rates estimated in the common carotid artery of a healthy volunteer are compared with magnetic resonance imaging (MRI) measured flow rates using a 1-D through-plane velocity sequence. Mean flow rates were 333 ± 31 mL/min for the presented method and 346 ± 2 mL/min for the MRI measurements.

  20. Refining the 3D seismic velocity and attenuation models for Katmai National Park, Alaska

    NASA Astrophysics Data System (ADS)

    Murphy, R. A.; Thurber, C. H.; Prejean, S. G.

    2009-12-01

    We invert data from approximately 4,000 local earthquakes occurring between September 2004 and August 2009 to determine the 3D P-wave velocity and P-wave attenuation structures in the Katmai volcanic region. Arrival information and waveforms for the study come from the Alaska Volcano Observatory’s permanent network of 20 seismometers in the area, which are predominantly single-component, short period instruments. The absolute and relative arrival times are used in a double-difference seismic tomography inversion to solve for an improved velocity model for the main volcanic centers. We use the resulting 3D velocity model to relocate all catalog earthquakes in Katmai between January 1996 and August 2009. Inversions for the quality factor Q are completed using a spectral decay approach to determine source parameters, t*, and site response with a nonlinear inversion. Using the final 3D velocity model to define the ray paths, t* values are then inverted to determine frequency-independent Q models. The final models developed through these inversions reveal a low velocity and low Q zone from the surface to ~7 km depth centered on the volcanic axis and extending ~25 km between Martin and Katmai volcanoes. The relocated hypocenters provide insight into the geometry of seismogenic structures in the area, revealing clustering of events into four distinct zones associated with Martin, Mageik, Trident, and Katmai. While the Martin, Mageik, and Katmai clusters are all at 3-4 km depth, the Trident cluster is slightly deeper at 4-6 km. Many new features are apparent within these clusters, including a strand of earthquakes trending NE-SW between the main Martin and Mageik clusters. Smaller linear features are also visible in the Katmai cluster along with a small migrating swarm which occurred NW of the Katmai caldera during mid-2006. Data from an array of 11 three-component broadband instruments currently deployed in the area between Mageik volcano and Katmai caldera will be

  1. Clutter in the GMTI range-velocity map.

    SciTech Connect

    Doerry, Armin Walter

    2009-04-01

    Ground Moving Target Indicator (GMTI) radar maps echo data to range and range-rate, which is a function of a moving target's velocity and its position within the antenna beam footprint. Even stationary clutter will exhibit an apparent motion spectrum and can interfere with moving vehicle detections. Consequently it is very important for a radar to understand how stationary clutter maps into radar measurements of range and velocity. This mapping depends on a wide variety of factors, including details of the radar motion, orientation, and the 3-D topography of the clutter.

  2. 3D isotropic shear wave velocity structure of the lithosphere-asthenosphere system underneath the Alpine-Mediterranean Mobile belt

    NASA Astrophysics Data System (ADS)

    El-Sharkawy, Amr; Weidle, Christian; Christiano, Luigia; Lebedev, Sergei; Meier, Thomas

    2017-04-01

    fundamental modes are calculated from the phase of the cross correlation functions weighted in the time-frequency plane. Path average dispersion curves are obtained by averaging the smooth parts of single-event dispersion curves. A careful quality control of the resulting phase velocities is performed. We calculate maps of Love and Rayleigh phase velocity at more than 100 different periods. The phase-velocity maps provide the local phase-velocity dispersion curve for each geographical grid node of the map. Each of these local dispersion curves is inverted individually for 1D shear wave velocity model using a newly implemented Particle Swarm Optimization (PSO) algorithm. The resulted 1D velocity models are then combined to construct the 3D shear-velocity model. Horizontal and vertical cross sections through the 3D isotropic model reveal significant variations in shear wave velocity with depth, and lateral changes in the crust and upper mantle structure emphasizing the processes associated with the convergence of the Eurasian and African plates. Key words: seismic tomography, Mediterranean, surface waves, particle swarm optimization.

  3. 3D Velocity Structure of Chukou Fault Area, Taiwan from Seismic Tomography

    NASA Astrophysics Data System (ADS)

    Chen, C.; Chang, W.; Jian, W.

    2009-12-01

    In this study, we used the seismic data that recorded by the broadband stations which deployed around the Chukou fault area, Taiwan. We have chosen 1661 earthquake events with high quality records in this research. The waveform cross correlation technique is applied to calculate the 143086 pairs of waveform data. By combining with data from the seismic catalog, there are 342202 absolute travel-time pairs through the double difference tomography method to relocate the seismicity and invert the 3D velocity structures beneath the Chukou fault area. Due to Taiwan Island is located in an active boundary zone between the Eurasia continental and Philippine Sea plates, the violent collision between the two plates which causes a series of imbricate fold-thrust belts to form between the western foothills and the coastal plain. The Chukou fault is just the boundary between the fold-thrust belts and the coastal plain in the Chia-Nan area, Taiwan. The seismotectonic structure beneath this area is more complex. From many studies, velocity structure can be used as an indicator of the geometry of fault and the general aspect of tectonics. Therefore, the first goal of this research is to analyze the degree of correlation between the velocity structure and the characteristics of seismicity and the tectonic implications of the area. The second intention is to study the distribution of seismic events and its association with fault activities. Our results indicate that the variation of velocity structure beneath fault area is caused by local geological structures, complex fault crossing. We also find that most earthquakes occur in the area that has Vp/Vs gradient varying rapidly. Finally, both using catalog and cross-correlation data in the inversion procedure are not only exhibit better resolution, but also can obtain the detail 3D velocity structure beneath the fault zone.

  4. Comparative velocity structure of active Hawaiian volcanoes from 3-D onshore-offshore seismic tomography

    USGS Publications Warehouse

    Park, J.; Morgan, J.K.; Zelt, C.A.; Okubo, P.G.; Peters, L.; Benesh, N.

    2007-01-01

    We present a 3-D P-wave velocity model of the combined subaerial and submarine portions of the southeastern part of the Island of Hawaii, based on first-arrival seismic tomography of marine airgun shots recorded by the onland seismic network. Our model shows that high-velocity materials (6.5-7.0??km/s) lie beneath Kilauea's summit, Koae fault zone, and the upper Southwest Rift Zone (SWRZ) and upper and middle East Rift Zone (ERZ), indicative of magma cumulates within the volcanic edifice. A separate high-velocity body of 6.5-6.9??km/s within Kilauea's lower ERZ and upper Puna Ridge suggests a distinct body of magma cumulates, possibly connected to the summit magma cumulates at depth. The two cumulate bodies within Kilauea's ERZ may have undergone separate ductile flow seaward, influencing the submarine morphology of Kilauea's south flank. Low velocities (5.0-6.3??km/s) seaward of Kilauea's Hilina fault zone, and along Mauna Loa's seaward facing Kao'iki fault zone, are attributed to thick piles of volcaniclastic sediments deposited on the submarine flanks. Loihi seamount shows high-velocity anomalies beneath the summit and along the rift zones, similar to the interpreted magma cumulates below Mauna Loa and Kilauea volcanoes, and a low-velocity anomaly beneath the oceanic crust, probably indicative of melt within the upper mantle. Around Kilauea's submarine flank, a high-velocity anomaly beneath the outer bench suggests the presence of an ancient seamount that may obstruct outward spreading of the flank. Mauna Loa's southeast flank is also marked by a large, anomalously high-velocity feature (7.0-7.4??km/s), interpreted to define an inactive, buried volcanic rift zone, which might provide a new explanation for the westward migration of Mauna Loa's current SWRZ and the growth of Kilauea's SWRZ. ?? 2007 Elsevier B.V. All rights reserved.

  5. Model-based correction of velocity measurements in navigated 3-D ultrasound imaging during neurosurgical interventions.

    PubMed

    Iversen, Daniel Hoyer; Lindseth, Frank; Unsgaard, Geirmund; Torp, Hans; Lovstakken, Lasse

    2013-09-01

    In neurosurgery, information of blood flow is important to identify and avoid damage to important vessels. Three-dimensional intraoperative ultrasound color-Doppler imaging has proven useful in this respect. However, due to Doppler angle-dependencies and the complexity of the vascular architecture, clinical valuable 3-D information of flow direction and velocity is currently not available. In this work, we aim to correct for angle-dependencies in 3-D flow images based on a geometric model of the neurovascular tree generated on-the-fly from free-hand 2-D imaging and an accurate position sensor system. The 3-D vessel model acts as a priori information of vessel orientation used to angle-correct the Doppler measurements, as well as provide an estimate of the average flow direction. Based on the flow direction we were also able to do aliasing correction to approximately double the measurable velocity range. In vitro experiments revealed a high accuracy and robustness for estimating the mean direction of flow. Accurate angle-correction of axial velocities were possible given a sufficient beam-to-flow angle for at least parts of a vessel segment . In vitro experiments showed an absolute relative bias of 9.5% for a challenging low-flow scenario. The method also showed promising results in vivo, improving the depiction of flow in the distal branches of intracranial aneurysms and the feeding arteries of an arteriovenous malformation. Careful inspection by an experienced surgeon confirmed the correct flow direction for all in vivo examples.

  6. 3-D crustal velocity structure of western Turkey: Constraints from full-waveform tomography

    NASA Astrophysics Data System (ADS)

    Çubuk-Sabuncu, Yeşim; Taymaz, Tuncay; Fichtner, Andreas

    2017-09-01

    The Sea of Marmara and western Turkey are characterized by intense seismicity and crustal deformation due to transition tectonics between the North Anatolian Fault Zone (NAFZ) and the extensional Aegean. Seismic imaging of the crust and uppermost mantle in W-NW Turkey is crucial to obtain a better understanding of its seismotectonics and geodynamics. So far, the Sea of Marmara and surroundings were considered in various active and passive seismic experiments providing significant information on crustal properties. Here, we further investigate the 3-D seismic velocity structure in this rapidly deforming region using non-linear full-waveform tomography based on the adjoint method. Our model is constrained by complete waveforms of 62 regional earthquakes (epicentral distance < 10°) with magnitudes Mw ≥ 3.7, which occurred between 2007 and 2015. Validation tests show that our final 3-D Earth model is able to explain seismic waveforms from earthquakes not used in the inversion at periods from 8-100 s to within the data uncertainties. Furthermore, quantitative resolution analyses yield 15 to 35 km horizontal resolution lengths in the shallow and deep crust beneath well-covered areas of W-NW Turkey. Our full-waveform tomography results indicate the presence of strong lateral and vertical velocity variations (2.55 ≤ VS ≤ 4.0 km/s) down to depths of ∼35 km. The seismic velocity distribution is characteristic of highly deformed and distributed crustal features along major fault zones (e.g. NAFZ and its branches), historic and recent regional volcanism (e.g. Kula volcanic province), and metamorphic core complex developments (e.g. Menderes and Kazdağ massifs). Radial anisotropy is very strong (around 20%) throughout the crust, further attesting to strong deformation and heterogeneity. Generally, our 3-D model is overall consistent with the active tectonics of western Turkey.

  7. 2D/3D velocity model for the high resolution 2D and 3D seismic data from the CO2SINK Ketzin Project

    NASA Astrophysics Data System (ADS)

    Ivanova, A.; Asch, G.; Lueth, S.; Goetz, J.

    2009-04-01

    Seismic traveltime inversion, traveltime tomography and seismic reflection techniques have been applied for two dimensional (2D) and three dimensional (3D) data acquired in conjunction with characterization and monitoring aspects at a carbon dioxide (CO2) geological storage site at Ketzin, Germany (the CO2SINK project) (S.Yordkayhun, 2008). A seismic source comparison from the 2D pilot study regarding acquisition parameters have been tested at the side has shown the weight drop source is suitable concerning the signal penetration, frequency content of the data and minimizing time and costs for the 3D data acquisition. For the Ketzin seismic data, the ability to obtain an accurate 2D/3D interval velocity model is limited by the acquisition geometry, source-generated noise and time shifts due to the near-surface effects producing severe distortions in the data. Moreover, these time shifts are comparable to the dominant periods of the reflections and to the size of structures to be imaged. Therefore, a combination of seismic refraction and state-of-the-art processing techniques, including careful static corrections and more accurate velocity analysis, has resulted in key improvements of the images and has allowed new information about the 2D/3D interval velocities. The results from these studies together with borehole information, hydrogeologic models and seismic modeling will be combined into an integrated 2D/3D velocity model. After that a careful 2D/3D depth migration is to be provided. It can be used as a database for the future monitoring program at the site.

  8. 3D anisotropic surface wave and shear wave velocity structure beneath Eastern Tibet

    NASA Astrophysics Data System (ADS)

    Ceylan, S.; Ni, J. F.; Chen, Y. J.; Tilmann, F. J.; Sandvol, E. A.

    2011-12-01

    suggest that the low velocity zone is due to warmer, thinner lithosphere in the northern Qiangtang and Songpan-Ganzi terranes. At depth, we observe high velocity bodies to the south both in our phase velocity and shear wave velocity maps, indicative of an underthrusting Indian lithosphere. Our phase maps and shear wave velocity-anomaly isosurfaces strongly indicate that underthrusting of Indian plate is sub-horizontal, has variable geometry in EW direction, and does not extend north of the BNS. We propose that underthrusting is accompanied by lateral tearing along old weak zones into at least two fragments, and subsequent break-off of the western-most portion. Our models reveal low velocity zones concentrated along major strike slip faults, which we attribute to strain heating. Furthermore, the Qiadam Basin is characterized by high velocities in the mantle, and moderate to slow velocities below the Kunlun Shan and northern Qiangtang argue against continental subduction.

  9. New algorithms to map asymmetries of 3D surfaces.

    PubMed

    Combès, Benoît; Prima, Sylvain

    2008-01-01

    In this paper, we propose a set of new generic automated processing tools to characterise the local asymmetries of anatomical structures (represented by surfaces) at an individual level, and within/between populations. The building bricks of this toolbox are: (1) a new algorithm for robust, accurate, and fast estimation of the symmetry plane of grossly symmetrical surfaces, and (2) a new algorithm for the fast, dense, nonlinear matching of surfaces. This last algorithm is used both to compute dense individual asymmetry maps on surfaces, and to register these maps to a common template for population studies. We show these two algorithms to be mathematically well-grounded, and provide some validation experiments. Then we propose a pipeline for the statistical evaluation of local asymmetries within and between populations. Finally we present some results on real data.

  10. 3D velocity structure of Mt. Fuji and the south Fossa Magna, Japan

    NASA Astrophysics Data System (ADS)

    Nakamichi, H.

    2005-12-01

    We present models of the velocity structure beneath the south Fossa Magna and Mt. Fuji, Japan, using local earthquake tomography and new data from a dense seismic network. The seismic network includes 28 temporary and 138 permanent 3-component seismic stations. The stations are deployed 2 - 10 km apart with a gradual increase in station spacing away from Mt. Fuji and are also densely distributed in the direction NE-SW across Mt. Fuji. We inverted 63,287 P- and 59,558 S-wave arrival times from 1087 local earthquakes to obtain the 3D P- (Vp) and S-wave velocity (Vs) and their ratio (Vp/Vs) structure. There is a high correlation between the Vp and Vs structures. At 5-15 km depths both velocity structures show low velocity anomalies trending northward in the west along the Fujikawa river, from Suruga Bay to northwest of Mt. Fuji. North of the Izu Peninsula, there is a broad high-velocity zone. These results correlate with Bouguer gravity anomalies previously observed. A shallowing high velocity anomaly is seen above sea level beneath Mt. Fuji. A low-Vp, Vs and Vp/Vs (1.5-1.6) anomaly is seen at depths of 7 - 17 km beneath Mt. Fuji, corresponding to locations of low-frequency (LF) earthquakes. Volatile fluids (CO2-H2O) could be abundant in the low Vp/Vs region and play an important role in generating the LF earthquakes. A low-Vp, Vs and high-Vp/Vs (1.8-1.9) anomaly is seen at depths of 15 - 25 km beneath Mt. Fuji and is interpreted as partial melt (basaltic magma). P-wave velocities of 6.0 - 6.5 km/s in the Izu collision zone beneath the Tanzawa Mountains indicate a plutonic body of tonalite within an accreted crustal slice of the Philippine Sea plate.

  11. The IASPEI Reference Event List to Support 3D Velocity Model Validation Studies

    NASA Astrophysics Data System (ADS)

    Bondar, I.; Storchak, D. A.

    2013-05-01

    The IASPEI Reference Event List (Ground Truth database) maintained and hosted by the International Seismological Centre (ISC) on behalf of the IASPEI became an indispensable tool for the validation of 3D seismic velocity models. The Ground Truth database is regularly updated and currently consists of some 7,600 GT0-5 events (earthquakes, chemical and nuclear explosions). Recently the CTBTO has launched a global initiative to facilitate the development of the Regional Seismic Travel Time (RSTT) velocity model on a global scale by forming regional expert groups. We make a concentrated effort to increase the number and the coverage of ground truth events in Latin America. To further support the RSTT development and validation studies, the ISC has developed a version of its location software to accommodate local and regional travel-time predictions provided by the RSTT software package. The RSTT-enabled ISC locator is made available through the ISC website.

  12. Simultaneous measurement of 3D zooplankton trajectories and surrounding fluid velocity field in complex flows.

    PubMed

    Adhikari, Deepak; Gemmell, Brad J; Hallberg, Michael P; Longmire, Ellen K; Buskey, Edward J

    2015-11-01

    We describe an automated, volumetric particle image velocimetry (PIV) and tracking method that measures time-resolved, 3D zooplankton trajectories and surrounding volumetric fluid velocity fields simultaneously and non-intrusively. The method is demonstrated for groups of copepods flowing past a wall-mounted cylinder. We show that copepods execute escape responses when subjected to a strain rate threshold upstream of a cylinder, but the same threshold range elicits no escape responses in the turbulent wake downstream. The method was also used to document the instantaneous slip velocity of zooplankton and the resulting differences in trajectory between zooplankton and non-inertial fluid particles in the unsteady wake flow, showing the method's capability to quantify drift for both passive and motile organisms in turbulent environments. Applications of the method extend to any group of organisms interacting with the surrounding fluid environment, where organism location, larger-scale eddies and smaller-scale fluid deformation rates can all be tracked and analyzed.

  13. Blood velocity assessment using 3D bright-blood time-resolved magnetic resonance angiography.

    PubMed

    Miraux, Sylvain; Franconi, Jean-Michel; Thiaudière, Eric

    2006-09-01

    Blood velocity is a functional parameter that is not easily assessed noninvasively, especially in small animals. A new noninvasive method that uses magnetic resonance angiography (MRA) to measure blood flows is proposed. This method is based on the time-of-flight (TOF) phenomenon. By initially suppressing the signal from the stationary spins in the area of interest, it is possible to sequentially visualize only the signal from the moving spins entering a given volume. With this method, 3D cine images of the blood flow can be generated by positive contrast, with unparalleled spatial (<200 microm) and temporal resolutions (<10 ms/image). As a result, it is possible to measure flow in sinuous paths. The present method was applied in vivo to measure the blood velocity in mouse carotid arteries. Because of its robustness and simplicity of implementation, this method has numerous potential applications for fundamental studies in small animal models. Copyright (c) 2006 Wiley-Liss, Inc.

  14. A 3-D crustal velocity structure across the Variscides of southwest Ireland

    NASA Astrophysics Data System (ADS)

    Landes, M.; Readman, P. W.; O'Reilly, B. M.; Shannon, P. M.

    2003-04-01

    In the VARNET-96 experiment three seismic refraction profiles were acquired to examine the crustal structure in the south-west of Ireland. The shotpoint geometry allowed for both in-line and off-line fan shot recordings on the three profiles. Results of 3-D inversion modelling illustrate that there is pervasive lateral heterogeneity of the sedimentary and crustal velocity structure south of the Shannon Estuary. Palaeozoic strata at the south coast are about 5-6 km thick associated with the sedimentary infill of the Munster and South Munster Basins. To the north, shallow upper crust in the vicinity of the Killarney-Mallow Fault Zone is followed by a 3-4 km thick sedimentary succession in the Dingle-Shannon Basin. A zone of high-velocity upper crust (6.4-6.6 km/s) beneath the South Munster Basin correlates with a gravity high between the Kenmare-Killarney and the Leinster Granite gravity lows. Other high-velocity zones beneath Dingle Bay and the Kenmare River region may be associated with the deep traces of the Killarney-Mallow Fault Zone and the Cork-Kenmare Line. The 3-D velocity model was taken as a basis for the computation of PmP reflected arrivals from the crust-mantle boundary. The Moho depth varies from 28-29 km at the south coast to 32-33 km beneath the Dingle-Shannon Basin. Pervasive Variscan deformation appears to be confined to the sedimentary and upper crustal structure thus supporting a thin-skinned tectonic model for Variscan deformation. Deep-crustal variations only occur where they can be correlated with major tectonic features such as the Caledonian Iapetus Suture near the Shannon Estuary. The shallowing of the Moho towards the coast may result from Mesozoic crustal extension in the adjacent offshore sedimentary basins.

  15. 3D shear-wave velocity structure of the eastern Tennessee seismic zone from ambient noise correlation data

    NASA Astrophysics Data System (ADS)

    Arroucau, Pierre; Kuponiyi, Ayodeji; Vlahovic, Gordana; Powell, Chris

    2013-04-01

    The Eastern Tennessee Seismic Zone (ETSZ) is an intraplate seismic region characterized by frequent but low magnitude earthquakes and is the second most active seismic area in the United States east of the Rocky Mountains. One key question in the ETSZ is the actual relationship between earthquake distribution and geological structure at depth. Seismicity is mostly confined in the Precambrian basement, below the Paleozoic cover of the southern Appalachian foreland fold-and-thrust belt and shows little to no correlation with surface geological features. Since the middle of the seventies, the Center for Earthquake Research and Information (CERI) has installed and maintained several seismic networks in central and eastern United States. In this work, we use Rayleigh wave group and phase velocity dispersion information obtained from cross-correlation of seismic ambient noise at 24 short-period stations located in the vicinity of the ETSZ. The 3D velocity structure is estimated in four steps. First, dispersion curves are obtained for simultaneously recording station pairs for periods ranging from 2 to 20 s. Then, 2D group and phase velocity maps are determined for each period. Those maps are further used to reconstruct dispersion curves at fixed, regularly spaced locations. For each of these locations, a 1D shear-wave velocity profile is finally inverted for, that takes velocity information from previous studies into account. By providing new information about the upper crustal structure of this region, this work is a contribution to the understanding of the seismic activity of the ETSZ, and -to a broader extent- of the structure and evolution of the North American lithosphere.

  16. Spatial Parallelism of a 3D Finite Difference, Velocity-Stress Elastic Wave Propagation Code

    SciTech Connect

    MINKOFF,SUSAN E.

    1999-12-09

    Finite difference methods for solving the wave equation more accurately capture the physics of waves propagating through the earth than asymptotic solution methods. Unfortunately. finite difference simulations for 3D elastic wave propagation are expensive. We model waves in a 3D isotropic elastic earth. The wave equation solution consists of three velocity components and six stresses. The partial derivatives are discretized using 2nd-order in time and 4th-order in space staggered finite difference operators. Staggered schemes allow one to obtain additional accuracy (via centered finite differences) without requiring additional storage. The serial code is most unique in its ability to model a number of different types of seismic sources. The parallel implementation uses the MP1 library, thus allowing for portability between platforms. Spatial parallelism provides a highly efficient strategy for parallelizing finite difference simulations. In this implementation, one can decompose the global problem domain into one-, two-, and three-dimensional processor decompositions with 3D decompositions generally producing the best parallel speed up. Because i/o is handled largely outside of the time-step loop (the most expensive part of the simulation) we have opted for straight-forward broadcast and reduce operations to handle i/o. The majority of the communication in the code consists of passing subdomain face information to neighboring processors for use as ''ghost cells''. When this communication is balanced against computation by allocating subdomains of reasonable size, we observe excellent scaled speed up. Allocating subdomains of size 25 x 25 x 25 on each node, we achieve efficiencies of 94% on 128 processors. Numerical examples for both a layered earth model and a homogeneous medium with a high-velocity blocky inclusion illustrate the accuracy of the parallel code.

  17. a Distributed Online 3D-LIDAR Mapping System

    NASA Astrophysics Data System (ADS)

    Schmiemann, J.; Harms, H.; Schattenberg, J.; Becker, M.; Batzdorfer, S.; Frerichs, L.

    2017-08-01

    In this paper we are presenting work done within the joint development project ANKommEn. It deals with the development of a highly automated robotic system for fast data acquisition in civil disaster scenarios. One of the main requirements is a versatile system, hence the concept embraces a machine cluster consisting of multiple fundamentally different robotic platforms. To cover a large variety of potential deployment scenarios, neither the absolute amount of participants, nor the precise individual layout of each platform shall be restricted within the conceptual design. Thus leading to a variety of special requirements, like onboard and online data processing capabilities for each individual participant and efficient data exchange structures, allowing reliable random data exchange between individual robots. We are demonstrating the functionality and performance by means of a distributed mapping system evaluated with real world data in a challenging urban and rural indoor/outdoor scenarios.

  18. 3-D Velocity Structure of Southwestern British Columbia and Northern Washington

    NASA Astrophysics Data System (ADS)

    Ramachandran, K.; Ramachandran, K.; Spence, G. D.; Dosso, S.; Hyndman, R. D.; Hyndman, R. D.; Brocher, T. M.; Fisher, M. M.

    2001-12-01

    A seismic tomography analysis in S.W. British Columbia and N. Washington has been used to define the velocity structure of the forearc crust and underlying subducting Juan de Fuca plate, and to obtain precise earthquake locations. First arrival travel-times from earthquakes and from the large airgun array used in the `Seismic Hazards Investigation of Puget Sound' (SHIPS) 1998 experiment, were simultaneously inverted for hypocentral parameters and velocity structure. Approximately 16,000 picks from 1,400 earthquakes recorded at 46 permanent stations, and 35,000 picks from the SHIPS experiment were used in the inversion. The velocity model was parameterized in the forward/inverse step by a node/cell spacing of 3 X 3 X 3 km over a volume of 360 X 450 X 93 km depth. The starting and final RMS travel time misfits were 479 ms and 120 ms respectively. Checkerboard tests conducted on the final velocity model imply good lateral resolution ranging from 30 to 50 km. The SHIPS airgun data mainly constrained the upper ~12 km and the earthquake data the deeper structure. The high velocity mafic Crescent Terrane that dips beneath the margin is well mapped in the velocity model on a regional scale. Its thickness beneath southern Vancouver Island is interpreted to reach ~20 km. Three high velocity structures above the subducting Juan de Fuca plate, having mafic to ultramafic velocities of 7.25-7.5 km/s, occur beneath southern Vancouver Island and Puget Sound at a depth of ~25 km. They may be associated with deeper parts of the Crescent Terrane, or with structures such as seamounts on the subducting Juan de Fuca plate. At the southern tip of Vancouver Islands, the Leech River Fault, Southern Whidbey Island Fault, and the Devils Mountain Fault appear to correlate with mapped seismicity. The subducting Juan de Fuca plate is well mapped beneath southern Vancouver Island, Olympic Peninsula, Strait of Georgia, and Puget Sound. The velocity model identifies the steepening dip in the

  19. GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function.

    PubMed

    Pietal, Michal J; Bujnicki, Janusz M; Kozlowski, Lukasz P

    2015-11-01

    To date, only a few distinct successful approaches have been introduced to reconstruct a protein 3D structure from a map of contacts between its amino acid residues (a 2D contact map). Current algorithms can infer structures from information-rich contact maps that contain a limited fraction of erroneous predictions. However, it is difficult to reconstruct 3D structures from predicted contact maps that usually contain a high fraction of false contacts. We describe a new, multi-step protocol that predicts protein 3D structures from the predicted contact maps. The method is based on a novel distance function acting on a fuzzy residue proximity graph, which predicts a 2D distance map from a 2D predicted contact map. The application of a Multi-Dimensional Scaling algorithm transforms that predicted 2D distance map into a coarse 3D model, which is further refined by typical modeling programs into an all-atom representation. We tested our approach on contact maps predicted de novo by MULTICOM, the top contact map predictor according to CASP10. We show that our method outperforms FT-COMAR, the state-of-the-art method for 3D structure reconstruction from 2D maps. For all predicted 2D contact maps of relatively low sensitivity (60-84%), GDFuzz3D generates more accurate 3D models, with the average improvement of 4.87 Å in terms of RMSD. GDFuzz3D server and standalone version are freely available at http://iimcb.genesilico.pl/gdserver/GDFuzz3D/. iamb@genesilico.pl Supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  20. Imaging of 3-D seismic velocity structure of Southern Sumatra region using double difference tomographic method

    SciTech Connect

    Lestari, Titik; Nugraha, Andri Dian

    2015-04-24

    Southern Sumatra region has a high level of seismicity due to the influence of the subduction system, Sumatra fault, Mentawai fault and stretching zone activities. The seismic activities of Southern Sumatra region are recorded by Meteorological Climatological and Geophysical Agency (MCGA’s) Seismograph network. In this study, we used earthquake data catalog compiled by MCGA for 3013 events from 10 seismic stations around Southern Sumatra region for time periods of April 2009 – April 2014 in order to invert for the 3-D seismic velocities structure (Vp, Vs, and Vp/Vs ratio). We applied double-difference seismic tomography method (tomoDD) to determine Vp, Vs and Vp/Vs ratio with hypocenter adjustment. For the inversion procedure, we started from the initial 1-D seismic velocity model of AK135 and constant Vp/Vs of 1.73. The synthetic travel time from source to receiver was calculated using ray pseudo-bending technique, while the main tomographic inversion was applied using LSQR method. The resolution model was evaluated using checkerboard test and Derivative Weigh Sum (DWS). Our preliminary results show low Vp and Vs anomalies region along Bukit Barisan which is may be associated with weak zone of Sumatran fault and migration of partial melted material. Low velocity anomalies at 30-50 km depth in the fore arc region may indicated the hydrous material circulation because the slab dehydration. We detected low seismic seismicity in the fore arc region that may be indicated as seismic gap. It is coincides contact zone of high and low velocity anomalies. And two large earthquakes (Jambi and Mentawai) also occurred at the contact of contrast velocity.

  1. Imaging of 3-D seismic velocity structure of Southern Sumatra region using double difference tomographic method

    NASA Astrophysics Data System (ADS)

    Lestari, Titik; Nugraha, Andri Dian

    2015-04-01

    Southern Sumatra region has a high level of seismicity due to the influence of the subduction system, Sumatra fault, Mentawai fault and stretching zone activities. The seismic activities of Southern Sumatra region are recorded by Meteorological Climatological and Geophysical Agency (MCGA's) Seismograph network. In this study, we used earthquake data catalog compiled by MCGA for 3013 events from 10 seismic stations around Southern Sumatra region for time periods of April 2009 - April 2014 in order to invert for the 3-D seismic velocities structure (Vp, Vs, and Vp/Vs ratio). We applied double-difference seismic tomography method (tomoDD) to determine Vp, Vs and Vp/Vs ratio with hypocenter adjustment. For the inversion procedure, we started from the initial 1-D seismic velocity model of AK135 and constant Vp/Vs of 1.73. The synthetic travel time from source to receiver was calculated using ray pseudo-bending technique, while the main tomographic inversion was applied using LSQR method. The resolution model was evaluated using checkerboard test and Derivative Weigh Sum (DWS). Our preliminary results show low Vp and Vs anomalies region along Bukit Barisan which is may be associated with weak zone of Sumatran fault and migration of partial melted material. Low velocity anomalies at 30-50 km depth in the fore arc region may indicated the hydrous material circulation because the slab dehydration. We detected low seismic seismicity in the fore arc region that may be indicated as seismic gap. It is coincides contact zone of high and low velocity anomalies. And two large earthquakes (Jambi and Mentawai) also occurred at the contact of contrast velocity.

  2. Face recognition using 3D facial shape and color map information: comparison and combination

    NASA Astrophysics Data System (ADS)

    Godil, Afzal; Ressler, Sandy; Grother, Patrick

    2004-08-01

    In this paper, we investigate the use of 3D surface geometry for face recognition and compare it to one based on color map information. The 3D surface and color map data are from the CAESAR anthropometric database. We find that the recognition performance is not very different between 3D surface and color map information using a principal component analysis algorithm. We also discuss the different techniques for the combination of the 3D surface and color map information for multi-modal recognition by using different fusion approaches and show that there is significant improvement in results. The effectiveness of various techniques is compared and evaluated on a dataset with 200 subjects in two different positions.

  3. Simultaneous inversion of 3D velocity structure, hypocenter locations, and reflector geometry in Cascadia

    NASA Astrophysics Data System (ADS)

    Preston, Leiph Alexander

    We develop and apply a non-linear inversion of direct and wide-angle reflection travel times for 3-D P-wave velocity structure, earthquake hypocenters, and reflector geometry under NW Washington focusing on the structure of the subducting Juan de Fuca plate. The first-arrival travel times are derived from both active-source experiments and from local earthquakes. The reflection arrivals were picked from data collected during the 1998 Wet SHIPS active-source experiment, which consisted of air-gun sources within the inland water-ways of NW Washington and SW British Columbia to land-based stations. Our inversion procedure reduces the well-known trade-off between reflector position and the velocities above it by the combination of simultaneous inversion and adequate crossing paths. We interpret the wide-angle reflector as the Moho of the subducting Juan de Fuca slab. The relocated intraslab earthquakes separate into two groups: those located up-dip of the 45km reflector depth contour generally lie below the reflector in material whose velocity exceeds 7.7km/s, placing them within the subducting mantle, while those down-dip of this contour occur within material whose velocities are 6.8--7.5km/s, placing them within subducted oceanic crust. We interpret these groups of earthquakes as resulting from serpentine dehydration in the subducted mantle and the basalt to eclogite transformation in the subducted crust. We have performed velocity checkerboard, slab velocity resolution, and parameter sensitivity tests to estimate our ability to resolve the relationship among the reflector, intraslab hypocenters, and slab velocity structure. These tests indicate we have the necessary resolvability and can distinguish the relative locations among the velocities, reflector, and intraslab hypocenters within the subducting slab to +/-2km. The occurrence of events within the subducted mantle geometrically allows for larger magnitude earthquakes than could occur if they were confined to

  4. Identifying the third dimension in 2D fluoroscopy to create 3D cardiac maps.

    PubMed

    Sra, Jasbir; Krum, David; Choudhuri, Indrajit; Belanger, Barry; Palma, Mark; Brodnick, Donald; Rowe, Daniel B

    2016-12-22

    Three-dimensional cardiac mapping is important for optimal visualization of the heart during cardiac ablation for the treatment of certain arrhythmias. However, many hospitals and clinics worldwide cannot afford the high cost of the current mapping systems. We set out to determine if, using predefined algorithms, comparable 3D cardiac maps could be created by a new device that relies on data generated from single-plane fluoroscopy and patient recording and monitoring systems, without the need for costly equipment, infrastructure changes, or specialized catheters. The study included phantom and animal experiments to compare the prototype test device, Navik 3D, with the existing CARTO 3 System. The primary endpoint directly compared: (a) the 3D distance between the Navik 3D-simulated ablation location and the back-projected ground truth location of the pacing and mapping catheter electrode, and (b) the same distance for CARTO. The study's primary objective was considered met if the 95% confidence lower limit was greater than 0.75% for the Navik 3D-CARTO difference between the 2 distances, or less than or equal to 2 mm. Study results showed that the Navik 3D performance was equivalent to the CARTO system, and that accurate 3D cardiac maps can be created using data from equipment that already exists in all electrophysiology labs.

  5. Lithologic identification & mapping test based on 3D inversion of magnetic and gravity

    NASA Astrophysics Data System (ADS)

    Yan, Jiayong; Lv, Qingtian; Qi, Guang; Zhao, Jinhua; Zhang, Yongqian

    2016-04-01

    Though lithologic identification & mapping to achieve ore concentration district transparent within 5km depth is the main way to realize deep fine structures study, to explore deep mineral resources and to reveal metallogenic regularity of large-scale ore district . Owing to the wide covered area, high sampling density and mature three-dimensional inversion algorithm of gravity and magnetic data, so gravity and magnetic inversion become the most likely way to achieve three-dimensional lithologic mapping at the present stage. In this paper, we take Lu-zong(Lujiang county to Zongyang county in Anhui province ,east China) ore district as a case, we proposed lithologic mapping flow based 3D inversion of gravity magnetic and then carry out the lithologic mapping test. Lithologic identification & mapping flow is as follows: 1. Analysis relations between lithology and density and magnetic susceptibility by cross plot. 2.Extracting appropriate residual anomalies from high-precision Bourger gravity and aeromagnetic. 3.Use same mesh, do 3D magnetic and gravity inversion respectively under prior information constrained, and then invert susceptibility and density 3D model. 4. According setp1, construct logical topology operations between density 3D model and susceptibility. 5.Use the logical operations, identify lithogies cell by cell in 3D mesh, and then get 3D lithological model. According this flow, we obtained three-dimensional distribution of five main type lithologies in the Lu-Zong ore district within 5km depth. The result of lithologic mapping not only showed that the shallow characteristics and surface geological mapping are basically Coincide,more importantly ,it reveals the deeper lithologic changes.The lithlogical model make up the insufficient of surface geological mapping. The lithologic mapping test results in Lu-Zong ore concentration district showed that lithological mapping using 3D inversion of gravity and magnetic is a effective method to reveal the

  6. Seismic Hazard Maps for Seattle, Washington, Incorporating 3D Sedimentary Basin Effects, Nonlinear Site Response, and Rupture Directivity

    USGS Publications Warehouse

    Frankel, Arthur D.; Stephenson, William J.; Carver, David L.; Williams, Robert A.; Odum, Jack K.; Rhea, Susan

    2007-01-01

    This report presents probabilistic seismic hazard maps for Seattle, Washington, based on over 500 3D simulations of ground motions from scenario earthquakes. These maps include 3D sedimentary basin effects and rupture directivity. Nonlinear site response for soft-soil sites of fill and alluvium was also applied in the maps. The report describes the methodology for incorporating source and site dependent amplification factors into a probabilistic seismic hazard calculation. 3D simulations were conducted for the various earthquake sources that can affect Seattle: Seattle fault zone, Cascadia subduction zone, South Whidbey Island fault, and background shallow and deep earthquakes. The maps presented in this document used essentially the same set of faults and distributed-earthquake sources as in the 2002 national seismic hazard maps. The 3D velocity model utilized in the simulations was validated by modeling the amplitudes and waveforms of observed seismograms from five earthquakes in the region, including the 2001 M6.8 Nisqually earthquake. The probabilistic seismic hazard maps presented here depict 1 Hz response spectral accelerations with 10%, 5%, and 2% probabilities of exceedance in 50 years. The maps are based on determinations of seismic hazard for 7236 sites with a spacing of 280 m. The maps show that the most hazardous locations for this frequency band (around 1 Hz) are soft-soil sites (fill and alluvium) within the Seattle basin and along the inferred trace of the frontal fault of the Seattle fault zone. The next highest hazard is typically found for soft-soil sites in the Duwamish Valley south of the Seattle basin. In general, stiff-soil sites in the Seattle basin exhibit higher hazard than stiff-soil sites outside the basin. Sites with shallow bedrock outside the Seattle basin have the lowest estimated hazard for this frequency band.

  7. 3-D velocities of a whole filament channel obtained by imaging and spectroscopic observations of IRIS

    NASA Astrophysics Data System (ADS)

    Wan, Linfeng

    2017-08-01

    The dynamics of a filament channel are of great importance to understand its formation and evolution. In this work, we try to make the best use of IRIS’s imaging and spectroscopic observations at the same time. With IRIS’s high spatial resolutions, we can clearly see that material in the filament channel moves in two opposite directions in the form of streams. It implies that counter-streamings may also be caused by siphon flows, as well as the common ways of thread longitudinal oscillations. Furthermore, the 3-D velocities of the whole filament channel are able to provide its exact information of magnetic configurations, which are mainly relied on magnetic extrapolation before.

  8. 3D P and S Wave Velocity Structure and Tremor Locations in the Parkfield Region

    NASA Astrophysics Data System (ADS)

    Zeng, X.; Thurber, C. H.; Shelly, D. R.; Bennington, N. L.; Cochran, E. S.; Harrington, R. M.

    2014-12-01

    We have assembled a new dataset to refine the 3D seismic velocity model in the Parkfield region. The S arrivals from 184 earthquakes recorded by the Parkfield Experiment to Record MIcroseismicity and Tremor array (PERMIT) during 2010-2011 were picked by a new S wave picker, which is based on machine learning. 74 blasts have been assigned to four quarries, whose locations were identified with Google Earth. About 1000 P and S wave arrivals from these blasts at permanent seismic network were also incorporated. Low frequency earthquakes (LFEs) occurring within non-volcanic tremor (NVT) are valuable for improving the precision of NVT location and the seismic velocity model at greater depths. Based on previous work (Shelley and Hardebeck, 2010), waveforms of hundreds of LFEs in same family were stacked to improve signal qualify. In a previous study (McClement et al., 2013), stacked traces of more than 30 LFE families at the Parkfileld Array Seismic Observatory (PASO) have been picked. We expanded our work to include LFEs recorded by the PERMIT array. The time-frequency Phase Weight Stacking (tf-PWS) method was introduced to improve the stack quality, as direct stacking does not produce clear S-wave arrivals on the PERMIT stations. This technique uses the coherence of the instantaneous phase among the stacked signals to enhance the signal-to-noise ratio (SNR) of the stack. We found that it is extremely effective for picking LFE arrivals (Thurber et al., 2014). More than 500 P and about 1000 S arrivals from 58 LFE families were picked at the PERMIT and PASO arrays. Since the depths of LFEs are much deeper than earthquakes, we are able to extend model resolution to lower crustal depths. Both P and S wave velocity structure have been obtained with the tomoDD method. The result suggests that there is a low velocity zone (LVZ) in the lower crust and the location of the LVZ is consistent with the high conductivity zone beneath the southern segment of the Rinconada fault that

  9. LITTLE THINGS in 3D: robust determination of the circular velocity of dwarf irregular galaxies

    NASA Astrophysics Data System (ADS)

    Iorio, Giuliano; Fraternali, Filippo; Nipoti, Carlo; Di Teodoro, Enrico; Read, Justin I.; Battaglia, Giuseppina

    2017-04-01

    Dwarf irregular galaxies (dIrrs) are the smallest stellar systems with extended H i discs. The study of the kinematics of such discs is a powerful tool to estimate the total matter distribution at these very small scales. In this work, we study the H i kinematics of 17 galaxies extracted from the 'Local Irregulars That Trace Luminosity Extremes, The H i Nearby Galaxy Survey' (LITTLE THINGS). Our approach differs significantly from previous studies in that we directly fit 3D models (two spatial dimensions plus one spectral dimension) using the software 3Dbarolo, fully exploiting the information in the H i data cubes. For each galaxy, we derive the geometric parameters of the H i disc (inclination and position angle), the radial distribution of the surface density, the velocity-dispersion (σv) profile and the rotation curve. The circular velocity (Vc), which traces directly the galactic potential, is then obtained by correcting the rotation curve for the asymmetric drift. As an initial application, we show that these dIrrs lie on a baryonic Tully-Fisher relation in excellent agreement with that seen on larger scales. The final products of this work are high-quality, ready-to-use kinematic data (Vc and σv) that we make publicly available. These can be used to perform dynamical studies and improve our understanding of these low-mass galaxies.

  10. Measurements of 3D velocity and scalar field for a film-cooled airfoil trailing edge

    NASA Astrophysics Data System (ADS)

    Benson, Michael J.; Elkins, Christopher J.; Eaton, John K.

    2011-08-01

    The 3D velocity and concentration fields have been measured for flow in a pressure side cutback trailing edge film cooling geometry consisting of rectangular film cooling slots separated by tapered lands. The velocity field was measured using conventional magnetic resonance velocimetry, and the concentration distribution was measured with a refined magnetic resonance concentration technique that yields experimental uncertainties for the concentration between 5 and 6%. All experiments were performed in water. A separation bubble behind the slot lip entrains coolant and promotes rapid turbulent mixing at the upper edge of the coolant jet. Vortices from inside the slot feed channel and on the upper sides of the lands rapidly distort the initially rectangular shape of the coolant stream and sweep mainstream flow toward the airfoil surface. The vortices also prevent any coolant from reaching the upper surfaces of the land. At the trailing edge, a second separation region exists in the blunt trailing edge wake. The flow forms suction side streaks behind the land tips, as well as streaks behind the slot centers on the pressure side. The peak coolant concentrations in the streaks remain above 25% through the end of the measurement domain, over 30 slot heights downstream.

  11. Using Adjoint Methods to Improve 3-D Velocity Models of Southern California

    NASA Astrophysics Data System (ADS)

    Liu, Q.; Tape, C.; Maggi, A.; Tromp, J.

    2006-12-01

    We use adjoint methods popular in climate and ocean dynamics to calculate Fréchet derivatives for tomographic inversions in southern California. The Fréchet derivative of an objective function χ(m), where m denotes the Earth model, may be written in the generic form δχ=int Km(x) δln m(x) d3x, where δln m=δ m/m denotes the relative model perturbation. For illustrative purposes, we construct the 3-D finite-frequency banana-doughnut kernel Km, corresponding to the misfit of a single traveltime measurement, by simultaneously computing the 'adjoint' wave field s† forward in time and reconstructing the regular wave field s backward in time. The adjoint wave field is produced by using the time-reversed velocity at the receiver as a fictitious source, while the regular wave field is reconstructed on the fly by propagating the last frame of the wave field saved by a previous forward simulation backward in time. The approach is based upon the spectral-element method, and only two simulations are needed to produce density, shear-wave, and compressional-wave sensitivity kernels. This method is applied to the SCEC southern California velocity model. Various density, shear-wave, and compressional-wave sensitivity kernels are presented for different phases in the seismograms. We also generate 'event' kernels for Pnl, S and surface waves, which are the Fréchet kernels of misfit functions that measure the P, S or surface wave traveltime residuals at all the receivers simultaneously for one particular event. Effectively, an event kernel is a sum of weighted Fréchet kernels, with weights determined by the associated traveltime anomalies. By the nature of the 3-D simulation, every event kernel is also computed based upon just two simulations, i.e., its construction costs the same amount of computation time as an individual banana-doughnut kernel. One can think of the sum of the event kernels for all available earthquakes, called the 'misfit' kernel, as a graphical

  12. Kinematic ground motion simulations on rough faults including effects of 3D stochastic velocity perturbations

    USGS Publications Warehouse

    Graves, Robert; Pitarka, Arben

    2016-01-01

    We describe a methodology for generating kinematic earthquake ruptures for use in 3D ground‐motion simulations over the 0–5 Hz frequency band. Our approach begins by specifying a spatially random slip distribution that has a roughly wavenumber‐squared fall‐off. Given a hypocenter, the rupture speed is specified to average about 75%–80% of the local shear wavespeed and the prescribed slip‐rate function has a Kostrov‐like shape with a fault‐averaged rise time that scales self‐similarly with the seismic moment. Both the rupture time and rise time include significant local perturbations across the fault surface specified by spatially random fields that are partially correlated with the underlying slip distribution. We represent velocity‐strengthening fault zones in the shallow (<5  km) and deep (>15  km) crust by decreasing rupture speed and increasing rise time in these regions. Additional refinements to this approach include the incorporation of geometric perturbations to the fault surface, 3D stochastic correlated perturbations to the P‐ and S‐wave velocity structure, and a damage zone surrounding the shallow fault surface characterized by a 30% reduction in seismic velocity. We demonstrate the approach using a suite of simulations for a hypothetical Mw 6.45 strike‐slip earthquake embedded in a generalized hard‐rock velocity structure. The simulation results are compared with the median predictions from the 2014 Next Generation Attenuation‐West2 Project ground‐motion prediction equations and show very good agreement over the frequency band 0.1–5 Hz for distances out to 25 km from the fault. Additionally, the newly added features act to reduce the coherency of the radiated higher frequency (f>1  Hz) ground motions, and homogenize radiation‐pattern effects in this same bandwidth, which move the simulations closer to the statistical characteristics of observed motions as illustrated by comparison with recordings from

  13. Towards a new tool to develop a 3-D shear-wave velocity model from converted waves

    NASA Astrophysics Data System (ADS)

    Colavitti, Leonardo; Hetényi, György

    2017-04-01

    The main target of this work is to develop a new method in which we exploit converted waves to construct a fully 3-D shear-wave velocity model of the crust. A reliable 3-D model is very important in Earth sciences because geological structures may vary significantly in their lateral dimension. In particular, shear-waves provide valuable complementary information with respect to P-waves because they usually guarantee a much better correlation in terms of rock density and mechanical properties, reducing the interpretation ambiguities. Therefore, it is fundamental to develop a new technique to improve structural images and to describe different lithologies in the crust. In this study we start from the analysis of receiver functions (RF, Langston, 1977), which are nowadays largely used for structural investigations based on passive seismic experiments, to map Earth discontinuities at depth. The RF technique is also commonly used to invert for velocity structure beneath single stations. Here, we plan to combine two strengths of RF method: shear-wave velocity inversion and dense arrays. Starting from a simple 3-D forward model, synthetic RFs are obtained extracting the structure along a ray to match observed data. During the inversion, thanks to a dense stations network, we aim to build and develop a multi-layer crustal model for shear-wave velocity. The initial model should be chosen simple to make sure that the inversion process is not influenced by the constraints in terms of depth and velocity posed at the beginning. The RFs inversion represents a complex problem because the amplitude and the arrival time of different phases depend in a non-linear way on the depth of interfaces and the characteristics of the velocity structure. The solution we envisage to manage the inversion problem is the stochastic Neighbourhood Algorithm (NA, Sambridge, 1999a, b), whose goal is to find an ensemble of models that sample the good data-fitting regions of a multidimensional parameter

  14. Pattern identification or 3D visualization? How best to learn topographic map comprehension

    NASA Astrophysics Data System (ADS)

    Atit, Kinnari

    Science, Technology, Engineering, and Mathematics (STEM) experts employ many representations that novices find hard to use because they require a critical STEM skill, interpreting two-dimensional (2D) diagrams that represent three-dimensional (3D) information. The current research focuses on learning to interpret topographic maps. Understanding topographic maps requires knowledge of how to interpret the conventions of contour lines, and skill in visualizing that information in 3D (e.g. shape of the terrain). Novices find both tasks difficult. The present study compared two interventions designed to facilitate understanding for topographic maps to minimal text-only instruction. The 3D Visualization group received instruction using 3D gestures and models to help visualize three topographic forms. The Pattern Identification group received instruction using pointing and tracing gestures to help identify the contour patterns associated with the three topographic forms. The Text-based Instruction group received only written instruction explaining topographic maps. All participants then completed a measure of topographic map use. The Pattern Identification group performed better on the map use measure than participants in the Text-based Instruction group, but no significant difference was found between the 3D Visualization group and the other two groups. These results suggest that learning to identify meaningful contour patterns is an effective strategy for learning how to comprehend topographic maps. Future research should address if learning strategies for how to interpret the information represented on a diagram (e.g. identify patterns in the contour lines), before trying to visualize the information in 3D (e.g. visualize the 3D structure of the terrain), also facilitates students' comprehension of other similar types of diagrams.

  15. A global 3D P-velocity model of the Earth's crust and mantle for improved event location : SALSA3D.

    SciTech Connect

    Young, Christopher John; Steck, Lee K.; Phillips, William Scott; Ballard, Sanford; Chang, Marcus C.; Rowe, Charlotte A.; Encarnacao, Andre Villanova; Begnaud, Michael A.; Hipp, James Richard

    2010-07-01

    To test the hypothesis that high quality 3D Earth models will produce seismic event locations which are more accurate and more precise, we are developing a global 3D P wave velocity model of the Earth's crust and mantle using seismic tomography. In this paper, we present the most recent version of our model, SALSA3D version 1.5, and demonstrate its ability to reduce mislocations for a large set of realizations derived from a carefully chosen set of globally-distributed ground truth events. Our model is derived from the latest version of the Ground Truth (GT) catalog of P and Pn travel time picks assembled by Los Alamos National Laboratory. To prevent over-weighting due to ray path redundancy and to reduce the computational burden, we cluster rays to produce representative rays. Reduction in the total number of ray paths is {approx}50%. The model is represented using the triangular tessellation system described by Ballard et al. (2009), which incorporates variable resolution in both the geographic and radial dimensions. For our starting model, we use a simplified two layer crustal model derived from the Crust 2.0 model over a uniform AK135 mantle. Sufficient damping is used to reduce velocity adjustments so that ray path changes between iterations are small. We obtain proper model smoothness by using progressive grid refinement, refining the grid only around areas with significant velocity changes from the starting model. At each grid refinement level except the last one we limit the number of iterations to prevent convergence thereby preserving aspects of broad features resolved at coarser resolutions. Our approach produces a smooth, multi-resolution model with node density appropriate to both ray coverage and the velocity gradients required by the data. This scheme is computationally expensive, so we use a distributed computing framework based on the Java Parallel Processing Framework, providing us with {approx}400 processors. Resolution of our model is assessed

  16. SALSA3D : a global 3D p-velocity model of the Earth's crust and mantle for improved event location.

    SciTech Connect

    Encarnacao, Andre Villanova; Begnaud, Michael A.; Rowe, Charlotte A.; Young, Christopher John; Chang, Marcus C.; Ballard, Sally C.; Hipp, James Richard

    2010-06-01

    To test the hypothesis that high quality 3D Earth models will produce seismic event locations which are more accurate and more precise, we are developing a global 3D P wave velocity model of the Earth's crust and mantle using seismic tomography. In this paper, we present the most recent version of our model, SALSA3D version 1.5, and demonstrate its ability to reduce mislocations for a large set of realizations derived from a carefully chosen set of globally-distributed ground truth events. Our model is derived from the latest version of the Ground Truth (GT) catalog of P and Pn travel time picks assembled by Los Alamos National Laboratory. To prevent over-weighting due to ray path redundancy and to reduce the computational burden, we cluster rays to produce representative rays. Reduction in the total number of ray paths is {approx}50%. The model is represented using the triangular tessellation system described by Ballard et al. (2009), which incorporates variable resolution in both the geographic and radial dimensions. For our starting model, we use a simplified two layer crustal model derived from the Crust 2.0 model over a uniform AK135 mantle. Sufficient damping is used to reduce velocity adjustments so that ray path changes between iterations are small. We obtain proper model smoothness by using progressive grid refinement, refining the grid only around areas with significant velocity changes from the starting model. At each grid refinement level except the last one we limit the number of iterations to prevent convergence thereby preserving aspects of broad features resolved at coarser resolutions. Our approach produces a smooth, multi-resolution model with node density appropriate to both ray coverage and the velocity gradients required by the data. This scheme is computationally expensive, so we use a distributed computing framework based on the Java Parallel Processing Framework, providing us with {approx}400 processors. Resolution of our model is assessed

  17. Computational methods for constructing protein structure models from 3D electron microscopy maps.

    PubMed

    Esquivel-Rodríguez, Juan; Kihara, Daisuke

    2013-10-01

    Protein structure determination by cryo-electron microscopy (EM) has made significant progress in the past decades. Resolutions of EM maps have been improving as evidenced by recently reported structures that are solved at high resolutions close to 3Å. Computational methods play a key role in interpreting EM data. Among many computational procedures applied to an EM map to obtain protein structure information, in this article we focus on reviewing computational methods that model protein three-dimensional (3D) structures from a 3D EM density map that is constructed from two-dimensional (2D) maps. The computational methods we discuss range from de novo methods, which identify structural elements in an EM map, to structure fitting methods, where known high resolution structures are fit into a low-resolution EM map. A list of available computational tools is also provided.

  18. Identifying the third dimension in 2D fluoroscopy to create 3D cardiac maps

    PubMed Central

    Krum, David; Choudhuri, Indrajit; Belanger, Barry; Palma, Mark; Brodnick, Donald; Rowe, Daniel B.

    2016-01-01

    Three-dimensional cardiac mapping is important for optimal visualization of the heart during cardiac ablation for the treatment of certain arrhythmias. However, many hospitals and clinics worldwide cannot afford the high cost of the current mapping systems. We set out to determine if, using predefined algorithms, comparable 3D cardiac maps could be created by a new device that relies on data generated from single-plane fluoroscopy and patient recording and monitoring systems, without the need for costly equipment, infrastructure changes, or specialized catheters. The study included phantom and animal experiments to compare the prototype test device, Navik 3D, with the existing CARTO 3 System. The primary endpoint directly compared: (a) the 3D distance between the Navik 3D–simulated ablation location and the back-projected ground truth location of the pacing and mapping catheter electrode, and (b) the same distance for CARTO. The study’s primary objective was considered met if the 95% confidence lower limit was greater than 0.75% for the Navik 3D–CARTO difference between the 2 distances, or less than or equal to 2 mm. Study results showed that the Navik 3D performance was equivalent to the CARTO system, and that accurate 3D cardiac maps can be created using data from equipment that already exists in all electrophysiology labs. PMID:28018976

  19. 3-D shear wave radially and azimuthally anisotropic velocity model of the North American upper mantle

    NASA Astrophysics Data System (ADS)

    Yuan, Huaiyu; Romanowicz, Barbara; Fischer, Karen M.; Abt, David

    2011-03-01

    Using a combination of long period seismic waveforms and SKS splitting measurements, we have developed a 3-D upper-mantle model (SAWum_NA2) of North America that includes isotropic shear velocity, with a lateral resolution of ˜250 km, as well as radial and azimuthal anisotropy, with a lateral resolution of ˜500 km. Combining these results, we infer several key features of lithosphere and asthenosphere structure. A rapid change from thin (˜70-80 km) lithosphere in the western United States (WUS) to thick lithosphere (˜200 km) in the central, cratonic part of the continent closely follows the Rocky Mountain Front (RMF). Changes with depth of the fast axis direction of azimuthal anisotropy reveal the presence of two layers in the cratonic lithosphere, corresponding to the fast-to-slow discontinuity found in receiver functions. Below the lithosphere, azimuthal anisotropy manifests a maximum, stronger in the WUS than under the craton, and the fast axis of anisotropy aligns with the absolute plate motion, as described in the hotspot reference frame (HS3-NUVEL 1A). In the WUS, this zone is confined between 70 and 150 km, decreasing in strength with depth from the top, from the RMF to the San Andreas Fault system and the Juan de Fuca/Gorda ridges. This result suggests that shear associated with lithosphere-asthenosphere coupling dominates mantle deformation down to this depth in the western part of the continent. The depth extent of the zone of increased azimuthal anisotropy below the cratonic lithosphere is not well resolved in our study, although it is peaked around 270 km, a robust result. Radial anisotropy is such that, predominantly, ξ > 1, where ξ= (Vsh/Vsv)2, under the continent and its borders down to ˜200 km, with stronger ξ in the bordering oceanic regions. Across the continent and below 200 km, alternating zones of weaker and stronger radial anisotropy, with predominantly ξ < 1, correlate with zones of small lateral changes in the fast axis direction of

  20. Tomographic active optical trapping of arbitrarily shaped objects by exploiting 3D refractive index maps

    NASA Astrophysics Data System (ADS)

    Kim, Kyoohyun; Park, Yongkeun

    2017-05-01

    Optical trapping can manipulate the three-dimensional (3D) motion of spherical particles based on the simple prediction of optical forces and the responding motion of samples. However, controlling the 3D behaviour of non-spherical particles with arbitrary orientations is extremely challenging, due to experimental difficulties and extensive computations. Here, we achieve the real-time optical control of arbitrarily shaped particles by combining the wavefront shaping of a trapping beam and measurements of the 3D refractive index distribution of samples. Engineering the 3D light field distribution of a trapping beam based on the measured 3D refractive index map of samples generates a light mould, which can manipulate colloidal and biological samples with arbitrary orientations and/or shapes. The present method provides stable control of the orientation and assembly of arbitrarily shaped particles without knowing a priori information about the sample geometry. The proposed method can be directly applied in biophotonics and soft matter physics.

  1. An image encryption algorithm based on 3D cellular automata and chaotic maps

    NASA Astrophysics Data System (ADS)

    Del Rey, A. Martín; Sánchez, G. Rodríguez

    2015-05-01

    A novel encryption algorithm to cipher digital images is presented in this work. The digital image is rendering into a three-dimensional (3D) lattice and the protocol consists of two phases: the confusion phase where 24 chaotic Cat maps are applied and the diffusion phase where a 3D cellular automata is evolved. The encryption method is shown to be secure against the most important cryptanalytic attacks.

  2. 3D ion velocity distribution function measurement in an electric thruster using laser induced fluorescence tomography.

    PubMed

    Elias, P Q; Jarrige, J; Cucchetti, E; Cannat, F; Packan, D

    2017-09-01

    Measuring the full ion velocity distribution function (IVDF) by non-intrusive techniques can improve our understanding of the ionization processes and beam dynamics at work in electric thrusters. In this paper, a Laser-Induced Fluorescence (LIF) tomographic reconstruction technique is applied to the measurement of the IVDF in the plume of a miniature Hall effect thruster. A setup is developed to move the laser axis along two rotation axes around the measurement volume. The fluorescence spectra taken from different viewing angles are combined using a tomographic reconstruction algorithm to build the complete 3D (in phase space) time-averaged distribution function. For the first time, this technique is used in the plume of a miniature Hall effect thruster to measure the full distribution function of the xenon ions. Two examples of reconstructions are provided, in front of the thruster nose-cone and in front of the anode channel. The reconstruction reveals the features of the ion beam, in particular on the thruster axis where a toroidal distribution function is observed. These findings are consistent with the thruster shape and operation. This technique, which can be used with other LIF schemes, could be helpful in revealing the details of the ion production regions and the beam dynamics. Using a more powerful laser source, the current implementation of the technique could be improved to reduce the measurement time and also to reconstruct the temporal evolution of the distribution function.

  3. Real-time volume rendering of 4D image using 3D texture mapping

    NASA Astrophysics Data System (ADS)

    Hwang, Jinwoo; Kim, June-Sic; Kim, Jae Seok; Kim, In Young; Kim, Sun Il

    2001-05-01

    Four dimensional image is 3D volume data that varies with time. It is used to express deforming or moving object in virtual surgery of 4D ultrasound. It is difficult to render 4D image by conventional ray-casting or shear-warp factorization methods because of their time-consuming rendering time or pre-processing stage whenever the volume data are changed. Even 3D texture mapping is used, repeated volume loading is also time-consuming in 4D image rendering. In this study, we propose a method to reduce data loading time using coherence between currently loaded volume and previously loaded volume in order to achieve real time rendering based on 3D texture mapping. Volume data are divided into small bricks and each brick being loaded is tested for similarity to one which was already loaded in memory. If the brick passed the test, it is defined as 3D texture by OpenGL functions. Later, the texture slices of the brick are mapped into polygons and blended by OpenGL blending functions. All bricks undergo this test. Continuously deforming fifty volumes are rendered in interactive time with SGI ONYX. Real-time volume rendering based on 3D texture mapping is currently available on PC.

  4. MAP(2.0)3D: a sequence/structure based server for protein engineering.

    PubMed

    Verma, Rajni; Schwaneberg, Ulrich; Roccatano, Danilo

    2012-04-20

    The Mutagenesis Assistant Program (MAP) is a web-based tool to provide statistical analyses of the mutational biases of directed evolution experiments on amino acid substitution patterns. MAP analysis assists protein engineers in the benchmarking of random mutagenesis methods that generate single nucleotide mutations in a codon. Herein, we describe a completely renewed and improved version of the MAP server, the MAP(2.0)3D server, which correlates the generated amino acid substitution patterns to the structural information of the target protein. This correlation aids in the selection of a more suitable random mutagenesis method with specific biases on amino acid substitution patterns. In particular, the new server represents MAP indicators on secondary and tertiary structure and correlates them to specific structural components such as hydrogen bonds, hydrophobic contacts, salt bridges, solvent accessibility, and crystallographic B-factors. Three model proteins (D-amino oxidase, phytase, and N-acetylneuraminic acid aldolase) are used to illustrate the novel capability of the server. MAP(2.0)3D server is available publicly at http://map.jacobs-university.de/map3d.html.

  5. The application of iterative closest point (ICP) registration to improve 3D terrain mapping estimates using the flash 3D ladar system

    NASA Astrophysics Data System (ADS)

    Woods, Jack; Armstrong, Ernest E.; Armbruster, Walter; Richmond, Richard

    2010-04-01

    The primary purpose of this research was to develop an effective means of creating a 3D terrain map image (point-cloud) in GPS denied regions from a sequence of co-bore sighted visible and 3D LIDAR images. Both the visible and 3D LADAR cameras were hard mounted to a vehicle. The vehicle was then driven around the streets of an abandoned village used as a training facility by the German Army and imagery was collected. The visible and 3D LADAR images were then fused and 3D registration performed using a variation of the Iterative Closest Point (ICP) algorithm. The ICP algorithm is widely used for various spatial and geometric alignment of 3D imagery producing a set of rotation and translation transformations between two 3D images. ICP rotation and translation information obtain from registering the fused visible and 3D LADAR imagery was then used to calculate the x-y plane, range and intensity (xyzi) coordinates of various structures (building, vehicles, trees etc.) along the driven path. The xyzi coordinates information was then combined to create a 3D terrain map (point-cloud). In this paper, we describe the development and application of 3D imaging techniques (most specifically the ICP algorithm) used to improve spatial, range and intensity estimates of imagery collected during urban terrain mapping using a co-bore sighted, commercially available digital video camera with focal plan of 640×480 pixels and a 3D FLASH LADAR. Various representations of the reconstructed point-clouds for the drive through data will also be presented.

  6. Poroelastic Wave Propagation With a 3D Velocity-Stress-Pressure Finite-Difference Algorithm

    NASA Astrophysics Data System (ADS)

    Aldridge, D. F.; Symons, N. P.; Bartel, L. C.

    2004-12-01

    Seismic wave propagation within a three-dimensional, heterogeneous, isotropic poroelastic medium is numerically simulated with an explicit, time-domain, finite-difference algorithm. A system of thirteen, coupled, first-order, partial differential equations is solved for the particle velocity vector components, the stress tensor components, and the pressure associated with solid and fluid constituents of the two-phase continuum. These thirteen dependent variables are stored on staggered temporal and spatial grids, analogous to the scheme utilized for solution of the conventional velocity-stress system of isotropic elastodynamics. Centered finite-difference operators possess 2nd-order accuracy in time and 4th-order accuracy in space. Seismological utility is enhanced by an optional stress-free boundary condition applied on a horizontal plane representing the earth's surface. Absorbing boundary conditions are imposed on the flanks of the 3D spatial grid via a simple wavefield amplitude taper approach. A massively parallel computational implementation, utilizing the spatial domain decomposition strategy, allows investigation of large-scale earth models and/or broadband wave propagation within reasonable execution times. Initial algorithm testing indicates that a point force density and/or moment density source activated within a poroelastic medium generates diverging fast and slow P waves (and possibly an S-wave)in accord with Biot theory. Solid and fluid particle velocities are in-phase for the fast P-wave, whereas they are out-of-phase for the slow P-wave. Conversions between all wave types occur during reflection and transmission at interfaces. Thus, although the slow P-wave is regarded as difficult to detect experimentally, its presence is strongly manifest within the complex of waves generated at a lithologic or fluid boundary. Very fine spatial and temporal gridding are required for high-fidelity representation of the slow P-wave, without inducing excessive

  7. Velocity selection in coupled-map lattices

    NASA Astrophysics Data System (ADS)

    Parekh, Nita; Puri, Sanjay

    1993-02-01

    We investigate the phenomenon of velocity selection for traveling wave fronts in a class of coupled-map lattices, derived by discretizations of the Fisher equation [Ann. Eugenics 7, 355 (1937)]. We find that the velocity selection can be understood in terms of a discrete analog of the marginal-stability hypothesis. A perturbative approach also enables us to estimate the selected velocity accurately for small values of the discretization mesh sizes.

  8. A 3-D velocity model for earthquake location from combined geological and geophysical data: a case study from the TABOO near fault observatory (Northern Apennines, Italy)

    NASA Astrophysics Data System (ADS)

    Latorre, Diana; Lupattelli, Andrea; Mirabella, Francesco; Trippetta, Fabio; Valoroso, Luisa; Lomax, Anthony; Di Stefano, Raffaele; Collettini, Cristiano; Chiaraluce, Lauro

    2014-05-01

    Accurate hypocenter location at the crustal scale strongly depends on our knowledge of the 3D velocity structure. The integration of geological and geophysical data, when available, should contribute to a reliable seismic velocity model in order to guarantee high quality earthquake locations as well as their consistency with the geological structure. Here we present a 3D, P- and S-wave velocity model of the Upper Tiber valley region (Northern Apennines) retrieved by combining an extremely robust dataset of surface and sub-surface geological data (seismic reflection profiles and boreholes), in situ and laboratory velocity measurements, and earthquake data. The study area is a portion of the Apennine belt undergoing active extension where a set of high-angle normal faults is detached on the Altotiberina low-angle normal fault (ATF). From 2010, this area hosts a scientific infrastructure (the Alto Tiberina Near Fault Observatory, TABOO; http://taboo.rm.ingv.it/), consisting of a dense array of multi-sensor stations, devoted to studying the earthquakes preparatory phase and the deformation processes along the ATF fault system. The proposed 3D velocity model is a layered model in which irregular shaped surfaces limit the boundaries between main lithological units. The model has been constructed by interpolating depth converted seismic horizons interpreted along 40 seismic reflection profiles (down to 4s two way travel times) that have been calibrated with 6 deep boreholes (down to 5 km depth) and constrained by detailed geological maps and structural surveys data. The layers of the model are characterized by similar rock types and seismic velocity properties. The P- and S-waves velocities for each layer have been derived from velocity measurements coming from both boreholes (sonic logs) and laboratory, where measurements have been performed on analogue natural samples increasing confining pressure in order to simulate crustal conditions. In order to test the 3D velocity

  9. 3D crustal seismic velocity model for the Gulf of Cadiz and adjacent areas (SW Iberia margin) based on seismic reflection and refraction profiles

    NASA Astrophysics Data System (ADS)

    Lozano, Lucía; Cantavella, Juan Vicente; Barco, Jaime; Carranza, Marta; Burforn, Elisa

    2016-04-01

    The Atlantic margin of the SW Iberian Peninsula and northern Morocco has been subject of study during the last 30 years. Many seismic reflection and refraction profiles have been carried out offshore, providing detailed information about the crustal structure of the main seafloor tectonic domains in the region, from the South Portuguese Zone and the Gulf of Cadiz to the Abyssal Plains and the Josephine Seamount. The interest to obtain a detailed and realistic velocity model for this area, integrating the available data from these studies, is clear, mainly to improve real-time earthquake hypocentral location and for tsunami and earthquake early warning. Since currently real-time seismic location tools allow the implementation of 3D velocity models, we aim to generate a full 3D crustal model. For this purpose we have reviewed more than 50 profiles obtained in different seismic surveys, from 1980 to 2008. Data from the most relevant and reliable 2D seismic velocity published profiles were retrieved. We first generated a Moho depth map of the studied area (latitude 32°N - 41°N and longitude 15°W - 5°W) by extracting Moho depths along each digitized profile with a 10 km spacing, and then interpolating this dataset using ordinary kriging method and generating the contour isodepth map. Then, a 3D crustal velocity model has been obtained. Selected vertical sections at different distances along each profile were considered to retrieve P-wave velocity values at each interface in order to reproduce the geometry and the velocity gradient within each layer. A double linear interpolation, both in distance and depth, with sampling rates of 10 km and 1 km respectively, was carried out to generate a (latitude, longitude, depth, velocity) matrix. This database of all the profiles was interpolated to obtain the P-wave velocity distribution map every kilometer of depth. The new 3D velocity model has been integrated in NonLinLoc location program to relocate several representative

  10. 3D P-wave velocity structure of the deep Galicia rifted margin: A first analysis of the Galicia 3D wide-angle seismic dataset

    NASA Astrophysics Data System (ADS)

    Bayrakci, Gaye; Minshull, Timothy A.; Davy, Richard G.; Karplus, Marianne S.; Kaeschen, Dirk; Papenberg, Cord; Krabbenhoeft, Anne; Sawyer, Dale; Reston, Timothy J.; Shillington, Donna J.; Ranero, César R.

    2014-05-01

    Galicia 3D, a reflection-refraction and long offset seismic experiment was carried out from May through September 2013, at the Galicia rifted margin (in the northeast Atlantic Ocean, west of Spain) as a collaboration between US, UK, German and Spanish groups. The 3D multichannel seismic acquisition conducted by R/V Marcus Langseth covered a 64 km by 20 km (1280 km2) zone where the main geological features are the Peridotite Ridge (PR), composed of serpentinized peridotite and thought be upper mantle exhumed to the seafloor during rifting, and the S reflector which has been interpreted to be a low angle detachment fault overlain by fault bounded, rotated, continental crustal blocks. In the 3D box, two airgun arrays of 3300 cu.in. were fired alternately (in flip-flop configuration) every 37.5 m. All shots are recorded by 44 short period four component ocean bottom seismometers (OBS) and 26 ocean bottom hydrophones (OBH) deployed and recovered by R/V Poseidon, as well as four 6 km hydrophone streamers with 12.5 m channel spacing towed by R/V Marcus Langseth. We present the preliminary results of the first arrival time tomography study which is carried out with a subset of the wide-angle dataset, in order to generate a 3D P-wave velocity volume for the entire depth sampled by the reflection data. After the relocation of OBSs and OBHs, an automatic first-arrival time picking approach is applied to a subset of the dataset, which comprises more than 5.5 million source-receiver pairs. Then, the first-arrival times are checked visually, in 3-dimensions. The a priori model used for the first-arrival time tomography is built up using information from previous seismic surveys carried out at the Galicia margin (e.g. ISE, 1997). The FAST algorithm of Zelt and Barton (1998) is used for the first-arrival time inversion. The 3D P-wave velocity volume can be used in interpreting the reflection dataset, as a starting point for migration, to quantify the thinning of the crustal layers

  11. Vulnerability mapping of groundwater contamination based on 3D lithostratigraphical models of porous aquifers.

    PubMed

    Ducci, Daniela; Sellerino, Mariangela

    2013-03-01

    The aim of this paper is to apply a methodology in order to reconstruct a lithostratigraphic 3D model of an aquifer so as to define some parameters involved in the evaluation of the aquifer vulnerability to contamination of porous aquifers. The DRASTIC, SINTACS and AVI methods have been applied to an alluvial coastal aquifer of southern Italy. The stratigraphic reconstruction has been obtained by interpolating stratigraphic data from more than one borehole per 2 km. The lithostratigraphic reconstruction of a 3D model has been applied and used for three-dimensional or two-dimensional representations. In the first two methods, the layers of the vadose zone and the aquifer media have been evaluated not only by the interpolation of the single boreholes and piezometers, but also by the 3D model, assigning the scores of the parameters of each layer of the 3D model. The comparison between the maps constructed from the weighted values in each borehole and the maps deriving from the attribution of the values of each layer of the 3D model, highlights that the second representation avoids or minimizes the "bullseye" effect linked to the presence of boreholes with higher or lower values. The study has demonstrated that it is possible to integrate a 3D lithostratigraphic model of an aquifer in the assessment of the parameters involved in the evaluation of the aquifer vulnerability to contamination by Point Count System methods. Copyright © 2012 Elsevier B.V. All rights reserved.

  12. 3-D ultrafast Doppler imaging applied to the noninvasive mapping of blood vessels in vivo.

    PubMed

    Provost, Jean; Papadacci, Clement; Demene, Charlie; Gennisson, Jean-Luc; Tanter, Mickael; Pernot, Mathieu

    2015-08-01

    Ultrafast Doppler imaging was introduced as a technique to quantify blood flow in an entire 2-D field of view, expanding the field of application of ultrasound imaging to the highly sensitive anatomical and functional mapping of blood vessels. We have recently developed 3-D ultrafast ultrasound imaging, a technique that can produce thousands of ultrasound volumes per second, based on a 3-D plane and diverging wave emissions, and demonstrated its clinical feasibility in human subjects in vivo. In this study, we show that noninvasive 3-D ultrafast power Doppler, pulsed Doppler, and color Doppler imaging can be used to perform imaging of blood vessels in humans when using coherent compounding of 3-D tilted plane waves. A customized, programmable, 1024-channel ultrasound system was designed to perform 3-D ultrafast imaging. Using a 32 × 32, 3-MHz matrix phased array (Vermon, Tours, France), volumes were beamformed by coherently compounding successive tilted plane wave emissions. Doppler processing was then applied in a voxel-wise fashion. The proof of principle of 3-D ultrafast power Doppler imaging was first performed by imaging Tygon tubes of various diameters, and in vivo feasibility was demonstrated by imaging small vessels in the human thyroid. Simultaneous 3-D color and pulsed Doppler imaging using compounded emissions were also applied in the carotid artery and the jugular vein in one healthy volunteer.

  13. 3D mapping of the dense interstellar gas around the Local Bubble

    NASA Astrophysics Data System (ADS)

    Lallement, R.; Welsh, B. Y.; Vergely, J. L.; Crifo, F.; Sfeir, D.

    2003-12-01

    We present intermediate results from a long-term program of mapping the neutral absorption characteristics of the local interstellar medium, motivated by the availability of accurate and consistent parallaxes from the Hipparcos satellite. Equivalent widths of the interstellar NaI D-line doublet at 5890 Å are presented for the lines-of-sight towards some 311 new target stars lying within ~ 350 pc of the Sun. Using these data, together with NaI absorption measurements towards a further ~ 240 nearby targets published in the literature (for many of them, in the directions of molecular clouds), and the ~ 450 lines-of-sight already presented by (Sfeir et al. \\cite{sfeir99}), we show 3D absorption maps of the local distribution of neutral gas towards 1005 sight-lines with Hipparcos distances as viewed from a variety of different galactic projections. The data are synthesized by means of two complementary methods, (i) by mapping of iso-equivalent width contours, and (ii) by density distribution calculation from the inversion of column-densities, a method devised by Vergely et al. (\\cite{vergely01}). Our present data confirms the view that the local cavity is deficient in cold and neutral interstellar gas. The closest dense and cold gas ``wall'', in the first quadrant, is at ~ 55-60 pc. There are a few isolated clouds at closer distance, if the detected absorption is not produced by circumstellar material. The maps reveal narrow or wide ``interstellar tunnels'' which connect the Local Bubble to surrounding cavities, as predicted by the model of Cox & Smith (1974). In particular, one of these tunnels, defined by stars at 300 to 600 pc from the Sun showing negligible sodium absorption, connects the well known CMa void (Gry et al. \\cite{gry85}), which is part of the Local Bubble, with the supershell GSH 238+00+09 (Heiles \\cite{heiles98}). High latitude lines-of-sight with the smallest absorption are found in two ``chimneys'', whose directions are perpendicular to the

  14. Velocity Measurement in Carotid Artery: Quantitative Comparison of Time-Resolved 3D Phase-Contrast MRI and Image-based Computational Fluid Dynamics

    PubMed Central

    Sarrami-Foroushani, Ali; Nasr Esfahany, Mohsen; Nasiraei Moghaddam, Abbas; Saligheh Rad, Hamidreza; Firouznia, Kavous; Shakiba, Madjid; Ghanaati, Hossein; Wilkinson, Iain David; Frangi, Alejandro Federico

    2015-01-01

    Background: Understanding hemodynamic environment in vessels is important for realizing the mechanisms leading to vascular pathologies. Objectives: Three-dimensional velocity vector field in carotid bifurcation is visualized using TR 3D phase-contrast magnetic resonance imaging (TR 3D PC MRI) and computational fluid dynamics (CFD). This study aimed to present a qualitative and quantitative comparison of the velocity vector field obtained by each technique. Subjects and Methods: MR imaging was performed on a 30-year old male normal subject. TR 3D PC MRI was performed on a 3 T scanner to measure velocity in carotid bifurcation. 3D anatomical model for CFD was created using images obtained from time-of-flight MR angiography. Velocity vector field in carotid bifurcation was predicted using CFD and PC MRI techniques. A statistical analysis was performed to assess the agreement between the two methods. Results: Although the main flow patterns were the same for the both techniques, CFD showed a greater resolution in mapping the secondary and circulating flows. Overall root mean square (RMS) errors for all the corresponding data points in PC MRI and CFD were 14.27% in peak systole and 12.91% in end diastole relative to maximum velocity measured at each cardiac phase. Bland-Altman plots showed a very good agreement between the two techniques. However, this study was not aimed to validate any of methods, instead, the consistency was assessed to accentuate the similarities and differences between Time-resolved PC MRI and CFD. Conclusion: Both techniques provided quantitatively consistent results of in vivo velocity vector fields in right internal carotid artery (RCA). PC MRI represented a good estimation of main flow patterns inside the vasculature, which seems to be acceptable for clinical use. However, limitations of each technique should be considered while interpreting results. PMID:26793288

  15. VizieR Online Data Catalog: 3D map of reddening and interstellar extinction (Gontcharov, 2017)

    NASA Astrophysics Data System (ADS)

    Gontcharov, G. A.

    2017-07-01

    This is a 3D map giving reddening and interstellar extinction for the net of X, Y, Z or l, b, R Galactic coordinates within R<1200 pc and |Z|<600 pc as well as for every point by trilinear interpolation. The quality of this map has been tested by successful positioning of the TGAS O-F main sequence stars on the HR diagram among the PARSEC and MIST theoretical isochrones. (2 data files).

  16. A hybrid experimental-numerical technique for determining 3D velocity fields from planar 2D PIV data

    NASA Astrophysics Data System (ADS)

    Eden, A.; Sigurdson, M.; Mezić, I.; Meinhart, C. D.

    2016-09-01

    Knowledge of 3D, three component velocity fields is central to the understanding and development of effective microfluidic devices for lab-on-chip mixing applications. In this paper we present a hybrid experimental-numerical method for the generation of 3D flow information from 2D particle image velocimetry (PIV) experimental data and finite element simulations of an alternating current electrothermal (ACET) micromixer. A numerical least-squares optimization algorithm is applied to a theory-based 3D multiphysics simulation in conjunction with 2D PIV data to generate an improved estimation of the steady state velocity field. This 3D velocity field can be used to assess mixing phenomena more accurately than would be possible through simulation alone. Our technique can also be used to estimate uncertain quantities in experimental situations by fitting the gathered field data to a simulated physical model. The optimization algorithm reduced the root-mean-squared difference between the experimental and simulated velocity fields in the target region by more than a factor of 4, resulting in an average error less than 12% of the average velocity magnitude.

  17. Design of 3D scanner for surface contour mapping by ultrasonic sensor

    NASA Astrophysics Data System (ADS)

    Munir, Muhammad Miftahul; Billah, Mohammad Aziz; Surachman, Arif; Budiman, Maman; Khairurrijal

    2015-04-01

    Surface mapping systems have attracted great attention due to their potential applications in many areas. In this paper, a simple 3D scanner based on ultrasonic sensor was designed for mapping a contour of object surface. The scanner using an SRF02 ultrasonic sensor, a microcontroller and radio frequency (RF) module to collect coordinates of object surface (point cloud), and sent data to computer. The point cloud collection process was performed by moving two ultrasonic sensors in y and x directions. Both sensors measure a distance from an object surface to a reference point of each sensor. The measurement results represent the point cloud of object surface and the data will be sent to computer via RF module. The point cloud then converted to 3D model using MATLAB. It was found that the object contours can be reconstructed very well by the developed 3D scanner system.

  18. The Use of Uas for Rapid 3d Mapping in Geomatics Education

    NASA Astrophysics Data System (ADS)

    Teo, Tee-Ann; Tian-Yuan Shih, Peter; Yu, Sz-Cheng; Tsai, Fuan

    2016-06-01

    With the development of technology, UAS is an advance technology to support rapid mapping for disaster response. The aim of this study is to develop educational modules for UAS data processing in rapid 3D mapping. The designed modules for this study are focused on UAV data processing from available freeware or trial software for education purpose. The key modules include orientation modelling, 3D point clouds generation, image georeferencing and visualization. The orientation modelling modules adopts VisualSFM to determine the projection matrix for each image station. Besides, the approximate ground control points are measured from OpenStreetMap for absolute orientation. The second module uses SURE and the orientation files from previous module for 3D point clouds generation. Then, the ground point selection and digital terrain model generation can be archived by LAStools. The third module stitches individual rectified images into a mosaic image using Microsoft ICE (Image Composite Editor). The last module visualizes and measures the generated dense point clouds in CloudCompare. These comprehensive UAS processing modules allow the students to gain the skills to process and deliver UAS photogrammetric products in rapid 3D mapping. Moreover, they can also apply the photogrammetric products for analysis in practice.

  19. Quantification of velocity reduction after flow diverter placement in intracranial aneurysm: An ex vivo study with 3D printed replicas.

    PubMed

    Anderson, Jeff R; Klucznik, Richard; Diaz, Orlando; Zhang, Y Jonathan; Britz, Gavin W; Grossman, Robert G; Karmonik, Christof

    2015-01-01

    Phase contrast MRI (pcMRI) was used to measure flow before and after placement of a flow diverter (n = 3). Decreases from 18% to 31% in flow velocity were seen in the inflow jet of the aneurysms. Flow patterns were also compared. It was observed that the gross aneurysmal flow patterns were maintained after flow diverter placement despite decreased fluid velocities. All measurements were carried out in 3D printed aneurysm replicas.

  20. Inclusion of high resolution MODIS maps on a 3D tropospheric water vapor GPS tomography model

    NASA Astrophysics Data System (ADS)

    Benevides, Pedro; Catalao, Joao; Nico, Giovanni; Miranda, Pedro M. A.

    2015-10-01

    Observing the water vapor distribution on the troposphere remains a challenge for the weather forecast. Radiosondes provide precise water vapor profiles of the troposphere, but lack geographical and temporal coverage, while satellite meteorological maps have good spatial resolution but even poorer temporal resolution. GPS has proved its capacity to measure the integrated water vapor in all weather conditions with high temporal sampling frequency. However these measurements lack a vertical water vapor discretization. Reconstruction of the slant path GPS observation to the satellite allows oblique water vapor measurements. Implementation of a 3D grid of voxels along the troposphere over an area where GPS stations are available enables the observation ray tracing. A relation between the water vapor density and the distanced traveled inside the voxels is established, defining GPS tomography. An inverse problem formulation is needed to obtain a water vapor solution. The combination of precipitable water vapor (PWV) maps obtained from MODIS satellite data with the GPS tomography is performed in this work. The MODIS PWV maps can have 1 or 5 km pixel resolution, being obtained 2 times per day in the same location at most. The inclusion of MODIS PWV maps provides an enhanced horizontal resolution for the tomographic solution and benefits the stability of the inversion problem. A 3D tomographic grid was adjusted over a regional area covering Lisbon, Portugal, where a GNSS network of 9 receivers is available. Radiosonde measurements in the area are used to evaluate the 3D water vapor tomography maps.

  1. Depth map resolution enhancement for 2D/3D imaging system via compressive sensing

    NASA Astrophysics Data System (ADS)

    Han, Juanjuan; Loffeld, Otmar; Hartmann, Klaus

    2011-08-01

    This paper introduces a novel approach for post-processing of depth map which enhances the depth map resolution in order to achieve visually pleasing 3D models from a new monocular 2D/3D imaging system consists of a Photonic mixer device (PMD) range camera and a standard color camera. The proposed method adopts the revolutionary inversion theory framework called Compressive Sensing (CS). The depth map of low resolution is considered as the result of applying blurring and down-sampling techniques to that of high-resolution. Based on the underlying assumption that the high-resolution depth map is compressible in frequency domain and recent theoretical work on CS, the high-resolution version can be estimated and furthermore reconstructed via solving non-linear optimization problem. And therefore the improved depth map reconstruction provides a useful help to build an improved 3D model of a scene. The experimental results on the real data are presented. In the meanwhile the proposed scheme opens new possibilities to apply CS to a multitude of potential applications on various multimodal data analysis and processing.

  2. Low-Velocity Impact Response and Finite Element Analysis of Four-Step 3-D Braided Composites

    NASA Astrophysics Data System (ADS)

    Sun, Baozhong; Zhang, Yan; Gu, Bohong

    2013-08-01

    The low-velocity impact characters of 3-D braided carbon/epoxy composites were investigated from experimental and finite element simulation approaches. The quasi-static tests were carried out at a constant velocity of 2 mm/min on MTS 810.23 material tester system to obtain the indentation load-displacement curves and indentation damages. The low-velocity tests were conducted at the velocities from 1 m/s to 6 m/s (corresponding to the impact energy from 3.22 J to 116 J) on Instron Dynatup 9250 impact tester. The peak force, energy for peak force, time to peak force, and total energy absorption were obtained to determine the impact responses of 3-D braided composites. A unit cell model was established according to the microstructure of 3-D braided composites to derive the constitutive equation. Based on the model, a user-defined material subroutine (VUMAT) has been compiled by FORTRAN and connected with commercial finite element code ABAQUS/Explicit to calculate the impact damage. The unit cell model successfully predicted the impact response of 3-D braided composites. Furthermore, the stress wave propagation and failure mechanisms have been revealed from the finite element simulation results and ultimate damage morphologies of specimens.

  3. Protein contact maps: A binary depiction of protein 3D structures

    NASA Astrophysics Data System (ADS)

    Emerson, Isaac Arnold; Amala, Arumugam

    2017-01-01

    In recent years, there has been a considerable interest in examining the structure and dynamics of complex networks. Proteins in 3D space may also be considered as complex systems emerged through the interactions of their constituent amino acids. This representation provides a powerful framework to uncover the general organized principle of protein contact network. Here we reviewed protein contact map in terms of protein structure prediction and analyses. In addition, we had also discussed the various computational techniques for the prediction of protein contact maps and the tools to visualize contact maps.

  4. From digital mapping to GIS-based 3D visualization of geological maps: example from the Western Alps geological units

    NASA Astrophysics Data System (ADS)

    Balestro, Gianni; Cassulo, Roberto; Festa, Andrea; Fioraso, Gianfranco; Nicolò, Gabriele; Perotti, Luigi

    2015-04-01

    Collection of field geological data and sharing of geological maps are nowadays greatly enhanced by using digital tools and IT (Information Technology) applications. Portable hardware allows accurate GPS localization of data and homogeneous storing of information in field databases, whereas GIS (Geographic Information Systems) applications enable generalization of field data and realization of geological map databases. A further step in the digital processing of geological map information consists of building virtual visualization by means of GIS-based 3D viewers, that allow projection and draping of significant geological features over photo-realistic terrain models. Digital fieldwork activities carried out by the Authors in the Western Alps, together with building of geological map databases and related 3D visualizations, are an example of application of the above described digital technologies. Digital geological mapping was performed by means of a GIS mobile software loaded on a rugged handheld device, and lithological, structural and geomorphological features with their attributes were stored in different layers that form the field database. The latter was then generalized through usual map processing steps such as outcrops interpolation, characterization of geological boundaries and selection of meaningful punctual observations. This map databases was used for building virtual visualizations through a GIS-based 3D-viewer that loaded detailed DTM (resolution of 5 meters) and aerial images. 3D visualizations were focused on projection and draping of significant stratigraphic contacts (e.g. contacts that separate different Quaternary deposits) and tectonic contacts (i.e. exhumation-related contacts that dismembered original ophiolite sequences). In our experience digital geological mapping and related databases ensured homogeneous data storing and effective sharing of information, and allowed subsequent building of 3D GIS-based visualizations. The latters gave

  5. Non-parametric 3D map of the intergalactic medium using the Lyman-alpha forest

    NASA Astrophysics Data System (ADS)

    Cisewski, Jessi; Croft, Rupert A. C.; Freeman, Peter E.; Genovese, Christopher R.; Khandai, Nishikanta; Ozbek, Melih; Wasserman, Larry

    2014-05-01

    Visualizing the high-redshift Universe is difficult due to the dearth of available data; however, the Lyman-alpha forest provides a means to map the intergalactic medium at redshifts not accessible to large galaxy surveys. Large-scale structure surveys, such as the Baryon Oscillation Spectroscopic Survey (BOSS), have collected quasar (QSO) spectra that enable the reconstruction of H I density fluctuations. The data fall on a collection of lines defined by the lines of sight (LOS) of the QSO, and a major issue with producing a 3D reconstruction is determining how to model the regions between the LOS. We present a method that produces a 3D map of this relatively uncharted portion of the Universe by employing local polynomial smoothing, a non-parametric methodology. The performance of the method is analysed on simulated data that mimics the varying number of LOS expected in real data, and then is applied to a sample region selected from BOSS. Evaluation of the reconstruction is assessed by considering various features of the predicted 3D maps including visual comparison of slices, probability density functions (PDFs), counts of local minima and maxima, and standardized correlation functions. This 3D reconstruction allows for an initial investigation of the topology of this portion of the Universe using persistent homology.

  6. Monoplane 3D reconstruction of mapping ablation catheters: a feasibility study.

    PubMed

    Fallavollita, P

    2010-01-01

    Radiofrequency (RF) catheter ablation has transformed treatment for arrhythmias and has become first-line therapy for some tachycardias. The precise localization of the arrhythmogenic site and the positioning of the RF catheter over that site are problematic: they can impair the efficiency of the procedure and are time consuming (several hours). This study evaluates the feasibility of using only single plane C-arm images in order to estimate the 3D coordinates of RF catheter electrodes in a cardiac phase. The method makes use of a priori 3D model of the RF mapping catheter assuming rigid body motion equations in order to estimate the 3D locations of the catheter tip-electrodes in single view C-arm fluoroscopy images. Validation is performed on both synthetic and clinical data using computer simulation models. The authors' monoplane reconstruction algorithm is applied to a 3D helix mimicking the shape of a catheter and undergoing solely rigid motion. Similarly, the authors test the feasibility of recovering nonrigid motion by applying their method on true 3D coordinates of 13 ventricular markers from a sheep's ventricle. The results of this study showed that the proposed monoplane algorithm recovers rigid motion adequately when using the spatial positions of a catheter in six consecutive C-arm image frames yielding maximum 3D root mean squares errors of 4.3 mm. On the other hand, the suggested algorithm did not recover nonrigid motion precisely as suggested by a maximum 3D root mean square value of 8 mm. Since RF catheter electrodes are rigid structures, the authors conclude that there is promise in recovering the 3D coordinates of the electrodes when making use of only single view images. Future work will involve adding nonrigid motion equations to their algorithm, which will then be applied to actual clinical data.

  7. 3D Geological Mapping - uncovering the subsurface to increase environmental understanding

    NASA Astrophysics Data System (ADS)

    Kessler, H.; Mathers, S.; Peach, D.

    2012-12-01

    Geological understanding is required for many disciplines studying natural processes from hydrology to landscape evolution. The subsurface structure of rocks and soils and their properties occupies three-dimensional (3D) space and geological processes operate in time. Traditionally geologists have captured their spatial and temporal knowledge in 2 dimensional maps and cross-sections and through narrative, because paper maps and later two dimensional geographical information systems (GIS) were the only tools available to them. Another major constraint on using more explicit and numerical systems to express geological knowledge is the fact that a geologist only ever observes and measures a fraction of the system they study. Only on rare occasions does the geologist have access to enough real data to generate meaningful predictions of the subsurface without the input of conceptual understanding developed from and knowledge of the geological processes responsible for the deposition, emplacement and diagenesis of the rocks. This in turn has led to geology becoming an increasingly marginalised science as other disciplines have embraced the digital world and have increasingly turned to implicit numerical modelling to understand environmental processes and interactions. Recent developments in geoscience methodology and technology have gone some way to overcoming these barriers and geologists across the world are beginning to routinely capture their knowledge and combine it with all available subsurface data (of often highly varying spatial distribution and quality) to create regional and national geological three dimensional geological maps. This is re-defining the way geologists interact with other science disciplines, as their concepts and knowledge are now expressed in an explicit form that can be used downstream to design process models structure. For example, groundwater modellers can refine their understanding of groundwater flow in three dimensions or even directly

  8. 3D crustal velocity structure beneath the broadband seismic array in the Gyeongju area of Korea by receiver function analyses

    NASA Astrophysics Data System (ADS)

    Lee, Dong Hun; Lee, Jung Mo; Cho, Hyun-Moo; Kang, Tae-Seob

    2016-10-01

    A temporary seismic array was in operation between October 2010 and March 2013 in the Gyeongju area of Korea. Teleseismic records of the seismic array appropriate for receiver function analysis were collected, and selected seismograms were split into five groups based on epicenters-the Banda-Molucca, Sumatra, Iran, Aleutian, and Vanuatu groups. 1D velocity structures beneath each seismic station were estimated by inverting the stacked receiver functions for possible groups. The inversion was done by applying a genetic algorithm, whereas surface wave dispersion data were used as constraints to avoid non-uniqueness in the inversion. The composite velocity structure was constructed by averaging the velocity structures weighted by the number of receiver functions used in stacking. The uncertainty analysis for the velocity structures showed that the average of 95% confidence intervals was ± 0.1 km/s. The 3D velocity structure was modeled through interpolation of 1D composite velocity structures. Moho depths were determined in each composite velocity structure based on the AK135-F S-wave velocity model, and the depths were similar to the H-κ analysis results. The deepest Moho depth in the study area was found to be 31.9 km, and the shallowest, was 25.9 km. The Moho discontinuity dips in a southwestward direction beneath the area. A low velocity layer was also detected between 4 and 14 km depth. Adakitic intrusions and/or a high geothermal gradient appear to be the causes of this low velocity layer. The 3D velocity structure can be used to reliably assess seismic hazards in this area.

  9. Speed and eccentricity tuning reveal a central role for the velocity-based cue to 3D visual motion.

    PubMed

    Czuba, Thaddeus B; Rokers, Bas; Huk, Alexander C; Cormack, Lawrence K

    2010-11-01

    Two binocular cues are thought to underlie the visual perception of three-dimensional (3D) motion: a disparity-based cue, which relies on changes in disparity over time, and a velocity-based cue, which relies on interocular velocity differences. The respective building blocks of these cues, instantaneous disparity and retinal motion, exhibit very distinct spatial and temporal signatures. Although these two cues are synchronous in naturally moving objects, disparity-based and velocity-based mechanisms can be dissociated experimentally. We therefore investigated how the relative contributions of these two cues change across a range of viewing conditions. We measured direction-discrimination sensitivity for motion though depth across a wide range of eccentricities and speeds for disparity-based stimuli, velocity-based stimuli, and "full cue" stimuli containing both changing disparities and interocular velocity differences. Surprisingly, the pattern of sensitivity for velocity-based stimuli was nearly identical to that for full cue stimuli across the entire extent of the measured spatiotemporal surface and both were clearly distinct from those for the disparity-based stimuli. These results suggest that for direction discrimination outside the fovea, 3D motion perception primarily relies on the velocity-based cue with little, if any, contribution from the disparity-based cue.

  10. 3D volume MR temperature mapping for HIFU heating trajectory comparisons

    NASA Astrophysics Data System (ADS)

    Todd, Nick; Vyas, Urvi; de Bever, Josh; Payne, Allison; Parker, Dennis L.

    2012-10-01

    Many areas of MR-guided thermal therapy research would benefit from temperature maps with high spatial and temporal resolution that cover a large 3-D volume. This paper describes an approach to achieve these goals that is suitable for research applications where retrospective reconstruction of the temperature maps is acceptable. The method acquires undersampled data from a modified 3-D segmented EPI sequence and creates images using a temporally constrained reconstruction algorithm. The 3-D images can be zero-filled to arbitrarily small voxel spacing in all directions and then converted into temperature maps using the standard proton resonance frequency (PRF) shift technique. During HIFU heating experiments, the proposed method was used to obtain temperature maps with 1.5×1.5×3.0 mm resolution, 288×162×78 mm field of view, and 1.7 second temporal resolution. The approach is validated to demonstrate that it can accurately capture the spatial characteristics and time dynamics of rapidly changing HIFU-induced temperature distributions. An example application is presented where the method is used to analyze and compare different HIFU volumetric heating trajectories.

  11. The effect of volumetric (3D) tactile symbols within inclusive tactile maps.

    PubMed

    Gual, Jaume; Puyuelo, Marina; Lloveras, Joaquim

    2015-05-01

    Point, linear and areal elements, which are two-dimensional and of a graphic nature, are the morphological elements employed when designing tactile maps and symbols for visually impaired users. However, beyond the two-dimensional domain, there is a fourth group of elements - volumetric elements - which mapmakers do not take sufficiently into account when it comes to designing tactile maps and symbols. This study analyses the effect of including volumetric, or 3D, symbols within a tactile map. In order to do so, the researchers compared two tactile maps. One of them uses only two-dimensional elements and is produced using thermoforming, one of the most popular systems in this field, while the other includes volumetric symbols, thus highlighting the possibilities opened up by 3D printing, a new area of production. The results of the study show that including 3D symbols improves the efficiency and autonomous use of these products. Copyright © 2014 Elsevier Ltd and The Ergonomics Society. All rights reserved.

  12. Mapping 3D fiber orientation in tissue using dual-angle optical polarization tractography.

    PubMed

    Wang, Y; Ravanfar, M; Zhang, K; Duan, D; Yao, G

    2016-10-01

    Optical polarization tractography (OPT) has recently been applied to map fiber organization in the heart, skeletal muscle, and arterial vessel wall with high resolution. The fiber orientation measured in OPT represents the 2D projected fiber angle in a plane that is perpendicular to the incident light. We report here a dual-angle extension of the OPT technology to measure the actual 3D fiber orientation in tissue. This method was first verified by imaging the murine extensor digitorum muscle placed at various known orientations in space. The accuracy of the method was further studied by analyzing the 3D fiber orientation of the mouse tibialis anterior muscle. Finally we showed that dual-angle OPT successfully revealed the unique 3D "arcade" fiber structure in the bovine articular cartilage.

  13. Mapping 3D fiber orientation in tissue using dual-angle optical polarization tractography

    PubMed Central

    Wang, Y.; Ravanfar, M.; Zhang, K.; Duan, D.; Yao, G.

    2016-01-01

    Optical polarization tractography (OPT) has recently been applied to map fiber organization in the heart, skeletal muscle, and arterial vessel wall with high resolution. The fiber orientation measured in OPT represents the 2D projected fiber angle in a plane that is perpendicular to the incident light. We report here a dual-angle extension of the OPT technology to measure the actual 3D fiber orientation in tissue. This method was first verified by imaging the murine extensor digitorum muscle placed at various known orientations in space. The accuracy of the method was further studied by analyzing the 3D fiber orientation of the mouse tibialis anterior muscle. Finally we showed that dual-angle OPT successfully revealed the unique 3D “arcade” fiber structure in the bovine articular cartilage. PMID:27867698

  14. Choroidal Thickness in Patients With Reticular Pseudodrusen Using 3D 1060-nm OCT Maps

    PubMed Central

    Haas, Paulina; Esmaeelpour, Marieh; Ansari-Shahrezaei, Siamak; Drexler, Wolfgang; Binder, Susanne

    2014-01-01

    Purpose. To map and analyze choroidal thickness (ChT) in AMD patients with reticular pseudodrusen (RPD) using three-dimensional (3D) 1060-nm optical coherence tomography (OCT). Methods. Fifty eyes from 25 patients with RPD were grouped according to the severity of AMD and the presence of RPD. All patients were imaged by high-speed (60,000 A-scans/s) 3D 1060-nm OCT over a 36 × 36° field of view. Choroidal thickness maps were automatically generated and compared with RPD areas visualized by fundus autofluorescence and infrared imaging. Retinal thickness maps, ChT maps, Haller's and Sattler's layer thickness were statistically analyzed between groups. Results. The mean ± SD (micrometers) subfoveal ChT was 201 ± 88 μm, 145 ± 48 μm, and 271 ± 130 μm for dry AMD with RPD, wet AMD with RPD, and eyes with wet AMD and no RPD, respectively. Choroidal thickness maps demonstrated the most significant choroidal thinning within eyes with wet AMD and RPD. Sattler's and Haller's layer thickness differed across the Early Treatment Diabetic Retinopathy Study grid when compared between eyes with and without RPD. Within eyes with RPD, ChT maps visualized that ChT was thicker below RDP areas than non-RPD areas. Conclusions. The 3D 1060-nm OCT choroidal maps over a large field of view offer noninvasive visualization for demonstrating local thickening correlation with RPD within each eye and overall thinning owing to AMD severity and RPD. This choroidal thinning was most striking in Sattler's layer, suggesting a choroidopathy of this vascular layer. PMID:24651554

  15. Choroidal thickness in patients with reticular pseudodrusen using 3D 1060-nm OCT maps.

    PubMed

    Haas, Paulina; Esmaeelpour, Marieh; Ansari-Shahrezaei, Siamak; Drexler, Wolfgang; Binder, Susanne

    2014-04-25

    To map and analyze choroidal thickness (ChT) in AMD patients with reticular pseudodrusen (RPD) using three-dimensional (3D) 1060-nm optical coherence tomography (OCT). Fifty eyes from 25 patients with RPD were grouped according to the severity of AMD and the presence of RPD. All patients were imaged by high-speed (60,000 A-scans/s) 3D 1060-nm OCT over a 36 × 36° field of view. Choroidal thickness maps were automatically generated and compared with RPD areas visualized by fundus autofluorescence and infrared imaging. Retinal thickness maps, ChT maps, Haller's and Sattler's layer thickness were statistically analyzed between groups. The mean ± SD (micrometers) subfoveal ChT was 201 ± 88 μm, 145 ± 48 μm, and 271 ± 130 μm for dry AMD with RPD, wet AMD with RPD, and eyes with wet AMD and no RPD, respectively. Choroidal thickness maps demonstrated the most significant choroidal thinning within eyes with wet AMD and RPD. Sattler's and Haller's layer thickness differed across the Early Treatment Diabetic Retinopathy Study grid when compared between eyes with and without RPD. Within eyes with RPD, ChT maps visualized that ChT was thicker below RDP areas than non-RPD areas. The 3D 1060-nm OCT choroidal maps over a large field of view offer noninvasive visualization for demonstrating local thickening correlation with RPD within each eye and overall thinning owing to AMD severity and RPD. This choroidal thinning was most striking in Sattler's layer, suggesting a choroidopathy of this vascular layer.

  16. Comparison of interferometric and stereo-radargrammetric 3D metrics in mapping of forest resources

    NASA Astrophysics Data System (ADS)

    Karila, K.; Karjalainen, M.; Yu, X.; Vastaranta, M.; Holopainen, M.; Hyyppa, J.

    2015-04-01

    Accurate forest resources maps are needed in diverse applications ranging from the local forest management to the global climate change research. In particular, it is important to have tools to map changes in forest resources, which helps us to understand the significance of the forest biomass changes in the global carbon cycle. In the task of mapping changes in forest resources for wide areas, Earth Observing satellites could play the key role. In 2013, an EU/FP7-Space funded project "Advanced_SAR" was started with the main objective to develop novel forest resources mapping methods based on the fusion of satellite based 3D measurements and in-situ field measurements of forests. During the summer 2014, an extensive field surveying campaign was carried out in the Evo test site, Southern Finland. Forest inventory attributes of mean tree height, basal area, mean stem diameter, stem volume, and biomass, were determined for 91 test plots having the size of 32 by 32 meters (1024 m2). Simultaneously, a comprehensive set of satellite and airborne data was collected. Satellite data also included a set of TanDEM-X (TDX) and TerraSAR-X (TSX) X-band synthetic aperture radar (SAR) images, suitable for interferometric and stereo-radargrammetric processing to extract 3D elevation data representing the forest canopy. In the present study, we compared the accuracy of TDX InSAR and TSX stereo-radargrammetric derived 3D metrics in forest inventory attribute prediction. First, 3D data were extracted from TDX and TSX images. Then, 3D data were processed as elevations above the ground surface (forest canopy height values) using an accurate Digital Terrain Model (DTM) based on airborne laser scanning survey. Finally, 3D metrics were calculated from the canopy height values for each test plot and the 3D metrics were compared with the field reference data. The Random Forest method was used in the forest inventory attributes prediction. Based on the results InSAR showed slightly better

  17. Depth map coding using residual segmentation for 3D video system

    NASA Astrophysics Data System (ADS)

    Lee, Cheon; Ho, Yo-Sung

    2013-06-01

    Advanced 3D video systems employ multi-view video-plus-depth data to support the free-viewpoint navigation and comfortable 3D viewing; thus efficient depth map coding becomes an important issue. Unlike the color image, the depth map has a property that depth values of the inner part of an object are monotonic, but those of object boundaries change abruptly. Therefore, residual data generated by prediction errors around object boundaries consume many bits in depth map coding. Representing them with segment data can be better than the use of the conventional transformation around the boundary regions. In this paper, we propose an efficient depth map coding method using a residual segmentation instead of using transformation. The proposed residual segmentation divides residual data into two regions with a segment map and two mean values. If the encoder selects the proposed method in terms of rates, two quantized mean values and an index of the segment map are transmitted. Simulation results show significant gains of up to 10 dB compared to the state-of-the-art coders, such as JPEG2000 and H.264/AVC. [Figure not available: see fulltext.

  18. SU-F-BRF-08: Conformal Mapping-Based 3D Surface Matching and Registration

    SciTech Connect

    Song, Y; Zeng, W; Gu, X; Liu, C

    2014-06-15

    Purpose: Recently, non-rigid 3D surface matching and registration has been used extensively in engineering and medicine. However, matching 3D surfaces undergoing non-rigid deformation accurately is still a challenging mathematical problem. In this study, we present a novel algorithm to address this issue by introducing intrinsic symmetry to the registration Methods: Our computational algorithm for symmetric conformal mapping is divided into three major steps: 1) Finding the symmetric plane; 2) Finding feature points; and 3) Performing cross registration. The key strategy is to preserve the symmetry during the conformal mapping, such that the image on the parameter domain is symmetric and the area distortion factor on the parameter image is also symmetric. Several novel algorithms were developed using different conformal geometric tools. One was based on solving Riemann-Cauchy equation and the other one employed curvature flow Results: Our algorithm was implemented using generic C++ on Windows XP and used conjugate gradient search optimization for acceleration. The human face 3D surface images were acquired using a high speed 3D scanner based on the phase-shifting method. The scanning speed was 30 frames/sec. The image resolution for each frame was 640 × 480. For 3D human face surfaces with different expressions, postures, and boundaries, our algorithms were able to produce consistent result on the texture pattern on the overlapping region Conclusion: We proposed a novel algorithm to improve the robustness of conformal geometric methods by incorporating the symmetric information into the mapping process. To objectively evaluate its performance, we compared it with most existing techniques. Experimental results indicated that our method outperformed all the others in terms of robustness. The technique has a great potential in real-time patient monitoring and tracking in image-guided radiation therapy.

  19. VizieR Online Data Catalog: 3D interstellar extinct. map within nearest kpc (Gontcharov, 2012)

    NASA Astrophysics Data System (ADS)

    Gontcharov, G. A.

    2016-07-01

    The product of the previously constructed 3D maps of stellar reddening (2010AstL...36..584G) and Rv variations (2012AstL...38...12G) has allowed us to produce a 3D interstellar extinction map within the nearest kiloparsec from the Sun with a spatial resolution of 100pc and an accuracy of 0.2m. This map is compared with the 2D reddening map by Schlegel et al. (1998ApJ...500..525S), the 3D extinction map at high latitudes by Jones et al. (2011AJ....142...44J), and the analytical 3D extinction models by Arenou et al. (1992A&A...258..104A) and Gontcharov (2009AstL...35..780G). In all cases, we have found good agreement and show that there are no systematic errors in the new map everywhere except the direction toward the Galactic center. We have found that the map by Schlegel et al. (1998ApJ...500..525S) reaches saturation near the Galactic equator at E(B-V)>0.8m, has a zero-point error and systematic errors gradually increasing with reddening, and among the analytical models those that take into account the extinction in the Gould Belt are more accurate. Our extinction map shows that it is determined by reddening variations at low latitudes and Rv variations at high ones. This naturally explains the contradictory data on the correlation or anticorrelation between reddening and Rv available in the literature. There is a correlation in a thin layer near the Galactic equator, because both reddening and Rv here increase toward the Galactic center. There is an anticorrelation outside this layer, because higher values of Rv correspond to lower reddening at high and middle latitudes. Systematic differences in sizes and other properties of the dust grains in different parts of the Galaxy manifest themselves in this way. The largest structures within the nearest kiloparsec, including the Local Bubble, the Gould Belt, the Great Tunnel, the Scorpius, Perseus, Orion, and other complexes, have manifested themselves in the constructed map. (1 data file).

  20. Generation of 3-D surface maps in waste storage silos using a structured light source

    NASA Technical Reports Server (NTRS)

    Burks, B. L.; Rowe, J. C.; Dinkins, M. A.; Christensen, B.; Selleck, C.; Jacoboski, D.; Markus, R.

    1992-01-01

    Surface contours inside the large waste storage tanks typical of the Department of Energy (DOE) complex are, in general, highly irregular. In addition to pipes and other pieces of equipment in the tanks, the surfaces may have features such as mounds, fissures, crystalline structures, and mixed solid and liquid forms. Prior to remediation activities, it will be necessary to characterize the waste to determine the most effective remediation approaches. Surface contour data will be required both prior to and during remediation. The use is described of a structured light source to generate 3-D surface contour maps of the interior of waste storage silos at the Feed Materials Production Center at Fernald, OH. The landscape inside these large waste storage tanks bears a strong resemblance to some of the landscapes that might be encountered during lunar or planetary exploration. Hence, these terrestrial 3-D mapping techniques may be directly applicable to extraterrestrial exploration. In further development, it will be demonstrated that these 3-D data can be used for robotic task planning just as 3-D surface contour data of a satellite could be used to plan maintenance tasks for a space-based servicing robot.

  1. Generation of 3-D surface maps in waste storage silos using a structured light source

    NASA Technical Reports Server (NTRS)

    Burks, B. L.; Rowe, J. C.; Dinkins, M. A.; Christensen, B.; Selleck, C.; Jacoboski, D.; Markus, R.

    1992-01-01

    Surface contours inside the large waste storage tanks typical of the Department of Energy (DOE) complex are, in general, highly irregular. In addition to pipes and other pieces of equipment in the tanks, the surfaces may have features such as mounds, fissures, crystalline structures, and mixed solid and liquid forms. Prior to remediation activities, it will be necessary to characterize the waste to determine the most effective remediation approaches. Surface contour data will be required both prior to and during remediation. The use is described of a structured light source to generate 3-D surface contour maps of the interior of waste storage silos at the Feed Materials Production Center at Fernald, OH. The landscape inside these large waste storage tanks bears a strong resemblance to some of the landscapes that might be encountered during lunar or planetary exploration. Hence, these terrestrial 3-D mapping techniques may be directly applicable to extraterrestrial exploration. In further development, it will be demonstrated that these 3-D data can be used for robotic task planning just as 3-D surface contour data of a satellite could be used to plan maintenance tasks for a space-based servicing robot.

  2. SynMap2 and SynMap3D: web-based whole-genome synteny browsers.

    PubMed

    Haug-Baltzell, Asher; Stephens, Sean A; Davey, Sean; Scheidegger, Carlos E; Lyons, Eric

    2017-07-15

    Current synteny visualization tools either focus on small regions of sequence and do not illustrate genome-wide trends, or are complicated to use and create visualizations that are difficult to interpret. To address this challenge, The Comparative Genomics Platform (CoGe) has developed two web-based tools to visualize synteny across whole genomes. SynMap2 and SynMap3D allow researchers to explore whole genome synteny patterns (across two or three genomes, respectively) in responsive, web-based visualization and virtual reality environments. Both tools have access to the extensive CoGe genome database (containing over 30 000 genomes) as well as the option for users to upload their own data. By leveraging modern web technologies there is no installation required, making the tools widely accessible and easy to use. Both tools are open source (MIT license) and freely available for use online through CoGe ( https://genomevolution.org ). SynMap2 and SynMap3D can be accessed at http://genomevolution.org/coge/SynMap.pl and http://genomevolution.org/coge/SynMap3D.pl , respectively. Source code is available: https://github.com/LyonsLab/coge . ericlyons@email.arizona.edu. Supplementary data are available at Bioinformatics online.

  3. 3-D Crustal Velocity Structure of Central Idaho/ Eastern Oregon from Joint Inversion of Rayleigh Wave Group and Phase Velocities Derived from Ambient Seismic Noise: Newest Results from the IDOR Project

    NASA Astrophysics Data System (ADS)

    Bremner, P. M.; Panning, M. P.; Russo, R. M.; Mocanu, V. I.; Stanciu, A. C.; Torpey, M. E.; Hongsresawat, S.; VanDecar, J. C.

    2014-12-01

    We present the latest 3-D isotropic crustal velocity model beneath central Idaho and eastern Oregon. We produced the velocity model from vertical component Rayleigh wave group and phase velocity measurements on data from the IDaho/ORegon (IDOR) Passive seismic network, 86 broadband seismic stations, using ambient noise tomography and the methods of Gallego et. al (2010) and Lin et. al (2008). We calculated inter-station group/phase velocities in narrow frequency bands from travel-time measurements of the stacked cross-correlations (bandpass filtered between 2 and 30 seconds), which we used to invert for velocity structure beneath the network. Goals of our work include refining models of crustal structure in the accreted Blue Mountain terranes in the western study area; determining the depth extent of the Salmon River Suture/West Idaho Shear Zone (WISZ), which crosses north-south through the middle of the network; determining the architecture of the Idaho batholith, an extensive largely crustal-derived pluton; and examining the nature of the autochthonous (?) North American crust and lithosphere beneath and east of the batholith. We derived Rayleigh wave group and phase velocity maps for each frequency band using the damped least-squares inversion method of Tarantola (2005), and then jointly inverted for velocity with depth. Moho depths are prescribed in the joint inversions based on receiver functions, also from the IDOR seismic data, and provides a starting crustal velocity model. 3-D checkerboard resolution tests indicate lateral resolution of better than 40 km. Preliminary results show higher S wave velocities in the western study area, and lower velocities in the lower crust on the east side of the network, consistent with Basin-and-Range style extension there. A tabular velocity anomaly juxtaposing higher above lower seismic velocities dips shallow west in the midcrust on the west side of the network.

  4. Web GIS in practice VII: stereoscopic 3-D solutions for online maps and virtual globes.

    PubMed

    Boulos, Maged N Kamel; Robinson, Larry R

    2009-10-22

    Because our pupils are about 6.5 cm apart, each eye views a scene from a different angle and sends a unique image to the visual cortex, which then merges the images from both eyes into a single picture. The slight difference between the right and left images allows the brain to properly perceive the 'third dimension' or depth in a scene (stereopsis). However, when a person views a conventional 2-D (two-dimensional) image representation of a 3-D (three-dimensional) scene on a conventional computer screen, each eye receives essentially the same information. Depth in such cases can only be approximately inferred from visual clues in the image, such as perspective, as only one image is offered to both eyes. The goal of stereoscopic 3-D displays is to project a slightly different image into each eye to achieve a much truer and realistic perception of depth, of different scene planes, and of object relief. This paper presents a brief review of a number of stereoscopic 3-D hardware and software solutions for creating and displaying online maps and virtual globes (such as Google Earth) in "true 3D", with costs ranging from almost free to multi-thousand pounds sterling. A practical account is also given of the experience of the USGS BRD UMESC (United States Geological Survey's Biological Resources Division, Upper Midwest Environmental Sciences Center) in setting up a low-cost, full-colour stereoscopic 3-D system.

  5. 3D Magnetic Induction Maps of Nanoscale Materials Revealed by Electron Holographic Tomography

    PubMed Central

    2015-01-01

    The investigation of three-dimensional (3D) ferromagnetic nanoscale materials constitutes one of the key research areas of the current magnetism roadmap and carries great potential to impact areas such as data storage, sensing, and biomagnetism. The properties of such nanostructures are closely connected with their 3D magnetic nanostructure, making their determination highly valuable. Up to now, quantitative 3D maps providing both the internal magnetic and electric configuration of the same specimen with high spatial resolution are missing. Here, we demonstrate the quantitative 3D reconstruction of the dominant axial component of the magnetic induction and electrostatic potential within a cobalt nanowire (NW) of 100 nm in diameter with spatial resolution below 10 nm by applying electron holographic tomography. The tomogram was obtained using a dedicated TEM sample holder for acquisition, in combination with advanced alignment and tomographic reconstruction routines. The powerful approach presented here is widely applicable to a broad range of 3D magnetic nanostructures and may trigger the progress of novel spintronic nonplanar nanodevices. PMID:27182110

  6. Web GIS in practice VII: stereoscopic 3-D solutions for online maps and virtual globes

    PubMed Central

    Boulos, Maged N Kamel; Robinson, Larry R

    2009-01-01

    Because our pupils are about 6.5 cm apart, each eye views a scene from a different angle and sends a unique image to the visual cortex, which then merges the images from both eyes into a single picture. The slight difference between the right and left images allows the brain to properly perceive the 'third dimension' or depth in a scene (stereopsis). However, when a person views a conventional 2-D (two-dimensional) image representation of a 3-D (three-dimensional) scene on a conventional computer screen, each eye receives essentially the same information. Depth in such cases can only be approximately inferred from visual clues in the image, such as perspective, as only one image is offered to both eyes. The goal of stereoscopic 3-D displays is to project a slightly different image into each eye to achieve a much truer and realistic perception of depth, of different scene planes, and of object relief. This paper presents a brief review of a number of stereoscopic 3-D hardware and software solutions for creating and displaying online maps and virtual globes (such as Google Earth) in "true 3D", with costs ranging from almost free to multi-thousand pounds sterling. A practical account is also given of the experience of the USGS BRD UMESC (United States Geological Survey's Biological Resources Division, Upper Midwest Environmental Sciences Center) in setting up a low-cost, full-colour stereoscopic 3-D system. PMID:19849837

  7. 3D Magnetic Induction Maps of Nanoscale Materials Revealed by Electron Holographic Tomography.

    PubMed

    Wolf, Daniel; Rodriguez, Luis A; Béché, Armand; Javon, Elsa; Serrano, Luis; Magen, Cesar; Gatel, Christophe; Lubk, Axel; Lichte, Hannes; Bals, Sara; Van Tendeloo, Gustaaf; Fernández-Pacheco, Amalio; De Teresa, José M; Snoeck, Etienne

    2015-10-13

    The investigation of three-dimensional (3D) ferromagnetic nanoscale materials constitutes one of the key research areas of the current magnetism roadmap and carries great potential to impact areas such as data storage, sensing, and biomagnetism. The properties of such nanostructures are closely connected with their 3D magnetic nanostructure, making their determination highly valuable. Up to now, quantitative 3D maps providing both the internal magnetic and electric configuration of the same specimen with high spatial resolution are missing. Here, we demonstrate the quantitative 3D reconstruction of the dominant axial component of the magnetic induction and electrostatic potential within a cobalt nanowire (NW) of 100 nm in diameter with spatial resolution below 10 nm by applying electron holographic tomography. The tomogram was obtained using a dedicated TEM sample holder for acquisition, in combination with advanced alignment and tomographic reconstruction routines. The powerful approach presented here is widely applicable to a broad range of 3D magnetic nanostructures and may trigger the progress of novel spintronic nonplanar nanodevices.

  8. Tomographic active optical trapping of arbitrarily shaped objects by exploiting 3D refractive index maps

    PubMed Central

    Kim, Kyoohyun; Park, YongKeun

    2017-01-01

    Optical trapping can manipulate the three-dimensional (3D) motion of spherical particles based on the simple prediction of optical forces and the responding motion of samples. However, controlling the 3D behaviour of non-spherical particles with arbitrary orientations is extremely challenging, due to experimental difficulties and extensive computations. Here, we achieve the real-time optical control of arbitrarily shaped particles by combining the wavefront shaping of a trapping beam and measurements of the 3D refractive index distribution of samples. Engineering the 3D light field distribution of a trapping beam based on the measured 3D refractive index map of samples generates a light mould, which can manipulate colloidal and biological samples with arbitrary orientations and/or shapes. The present method provides stable control of the orientation and assembly of arbitrarily shaped particles without knowing a priori information about the sample geometry. The proposed method can be directly applied in biophotonics and soft matter physics. PMID:28530232

  9. Web GIS in practice VII: stereoscopic 3-D solutions for online maps and virtual globes

    USGS Publications Warehouse

    Boulos, Maged N.K.; Robinson, Larry R.

    2009-01-01

    Because our pupils are about 6.5 cm apart, each eye views a scene from a different angle and sends a unique image to the visual cortex, which then merges the images from both eyes into a single picture. The slight difference between the right and left images allows the brain to properly perceive the 'third dimension' or depth in a scene (stereopsis). However, when a person views a conventional 2-D (two-dimensional) image representation of a 3-D (three-dimensional) scene on a conventional computer screen, each eye receives essentially the same information. Depth in such cases can only be approximately inferred from visual clues in the image, such as perspective, as only one image is offered to both eyes. The goal of stereoscopic 3-D displays is to project a slightly different image into each eye to achieve a much truer and realistic perception of depth, of different scene planes, and of object relief. This paper presents a brief review of a number of stereoscopic 3-D hardware and software solutions for creating and displaying online maps and virtual globes (such as Google Earth) in "true 3D", with costs ranging from almost free to multi-thousand pounds sterling. A practical account is also given of the experience of the USGS BRD UMESC (United States Geological Survey's Biological Resources Division, Upper Midwest Environmental Sciences Center) in setting up a low-cost, full-colour stereoscopic 3-D system.

  10. 3D mapping of crystallographic phase distribution using energy-selective neutron tomography.

    PubMed

    Woracek, Robin; Penumadu, Dayakar; Kardjilov, Nikolay; Hilger, Andre; Boin, Mirko; Banhart, John; Manke, Ingo

    2014-06-25

    Nondestructive 3D mapping of crystallographic phases is introduced providing distribution of phase fractions within the bulk (centimeter range) of samples with micrometer-scale resolution. The novel neutron tomography based technique overcomes critical limitations of existing techniques and offers a wide range of potential applications. It is demonstrated for steel samples exhibiting phase transformation after being subjected to tensile and torsional deformation. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  11. 3D Mapping of Glacially-Sculpted Bedrock in Central Park

    NASA Astrophysics Data System (ADS)

    Laderman, L.; Stark, C. P.; Creyts, T. T.

    2014-12-01

    The movement of glaciers and ice sheets through sliding over bedrock depends on the configuration of the subglacial hydrological system. Over time, the glacier erodes the bedrock, which in turn changes water drainage pathways, the overall interaction with the ice, and potentially sliding rates. Drainage can take many forms. At the largest scale, subglacial lakes tens of kilometers in length store water, but the individual pathways are often on the order of meters or smaller. Studies at such a fine scale are only possible by looking at deglaciated beds to infer water drainage. 3D mapping can resolve centimeter scale features and inform studies of the processes that created them. In this survey, Agisoft Photoscan's structure from motion algorithm is used to create a map of Umpire Rock in New York's Central Park from digital photographs. Over 3300 photographs are taken at a separation of roughly half a meter to cover the 1000 square meter survey area. The surface is imaged in separate sections and the resulting point clouds are each aligned with a central section using Photoscan's Align Chunks tool. This process allows additional areas to easily be added to the 3D map. The scale of the final model is accurate to 1mm across the survey area and 3D meshes with a surface resolution of up to 5mm can be created. The distribution of striation directions and sizes on surfaces across the outcrop gives the overall flow direction of the ice and, more locally, illustrates how ice deforms around bedrock features. In addition to striations, we identify cavities and subtle drainage features that are oblique to ice flow. This study demonstrates the relative ease of 3D mapping bedrock outcrops from digital photographs, and indicates the utility of applying this process to more recently deglaciated areas.

  12. New approach to navigation: matching sequential images to 3D terrain maps

    NASA Astrophysics Data System (ADS)

    Zhang, Tianxu; Hu, Bo; Li, Wei

    1998-03-01

    In this paper an efficient image matching algorithm is presented for use in aircraft navigation. A sequence images with each two successive images partially overlapped is sensed by a monocular optical system. 3D undulation features are recovered from the image pairs, and then matched against a reference undulation feature map. Finally, the aircraft position is estimated by minimizing Hausdorff distance measure. The simulation experiment using real terrain data is reported.

  13. A Photo-Realistic 3-D Mapping System for Extreme Nuclear Environments: Chornobyl

    NASA Technical Reports Server (NTRS)

    Maimone, M.; Matthies, L.; Osborn, J.; Teza, J.; Thayer, S.

    1998-01-01

    We present a novel stereoscopic mapping system for use in nuclear accident settings. First we discuss a radiation shielded sensor array desigtned to tolerate 10(sup 6)R of cumulative dose. Next we give procedures to ensure timely, accurate range estimation using trinocular stereo. Finally, we review the implementation of a system for the integration of range information into a 3-D, textured, metrically accurate surface mesh.

  14. 3D elemental mapping with nanometer scale depth resolution via electron optical sectioning

    DOE PAGES

    Pennycook, Timothy J.; Yang, Hao; Jones, Lewys; ...

    2016-12-05

    Electron energy loss spectroscopy in the scanning transmission electron microscope has long been used to perform elemental mapping but has not previously exhibited depth sensitivity. The key to depth resolution with optical sectioning is the transfer of sufficiently high lateral spatial frequencies. By performing spectrum imaging with atomic resolution we achieve in this paper nanometer scale depth resolution, enabling us to optically section an oxide heterostructure spectroscopically. Finally, such 3D elemental mapping is sensitive to atomic scale changes in structure and composition and is more interpretable than Z-contrast imaging alone.

  15. Low Cost and Efficient 3d Indoor Mapping Using Multiple Consumer Rgb-D Cameras

    NASA Astrophysics Data System (ADS)

    Chen, C.; Yang, B. S.; Song, S.

    2016-06-01

    Driven by the miniaturization, lightweight of positioning and remote sensing sensors as well as the urgent needs for fusing indoor and outdoor maps for next generation navigation, 3D indoor mapping from mobile scanning is a hot research and application topic. The point clouds with auxiliary data such as colour, infrared images derived from 3D indoor mobile mapping suite can be used in a variety of novel applications, including indoor scene visualization, automated floorplan generation, gaming, reverse engineering, navigation, simulation and etc. State-of-the-art 3D indoor mapping systems equipped with multiple laser scanners product accurate point clouds of building interiors containing billions of points. However, these laser scanner based systems are mostly expensive and not portable. Low cost consumer RGB-D Cameras provides an alternative way to solve the core challenge of indoor mapping that is capturing detailed underlying geometry of the building interiors. Nevertheless, RGB-D Cameras have a very limited field of view resulting in low efficiency in the data collecting stage and incomplete dataset that missing major building structures (e.g. ceilings, walls). Endeavour to collect a complete scene without data blanks using single RGB-D Camera is not technic sound because of the large amount of human labour and position parameters need to be solved. To find an efficient and low cost way to solve the 3D indoor mapping, in this paper, we present an indoor mapping suite prototype that is built upon a novel calibration method which calibrates internal parameters and external parameters of multiple RGB-D Cameras. Three Kinect sensors are mounted on a rig with different view direction to form a large field of view. The calibration procedure is three folds: 1, the internal parameters of the colour and infrared camera inside each Kinect are calibrated using a chess board pattern, respectively; 2, the external parameters between the colour and infrared camera inside each

  16. Web GIS in practice V: 3-D interactive and real-time mapping in Second Life

    PubMed Central

    Boulos, Maged N Kamel; Burden, David

    2007-01-01

    This paper describes technologies from Daden Limited for geographically mapping and accessing live news stories/feeds, as well as other real-time, real-world data feeds (e.g., Google Earth KML feeds and GeoRSS feeds) in the 3-D virtual world of Second Life, by plotting and updating the corresponding Earth location points on a globe or some other suitable form (in-world), and further linking those points to relevant information and resources. This approach enables users to visualise, interact with, and even walk or fly through, the plotted data in 3-D. Users can also do the reverse: put pins on a map in the virtual world, and then view the data points on the Web in Google Maps or Google Earth. The technologies presented thus serve as a bridge between mirror worlds like Google Earth and virtual worlds like Second Life. We explore the geo-data display potential of virtual worlds and their likely convergence with mirror worlds in the context of the future 3-D Internet or Metaverse, and reflect on the potential of such technologies and their future possibilities, e.g. their use to develop emergency/public health virtual situation rooms to effectively manage emergencies and disasters in real time. The paper also covers some of the issues associated with these technologies, namely user interface accessibility and individual privacy. PMID:18042275

  17. Using Openstreetmap Data to Generate Building Models with Their Inner Structures for 3d Maps

    NASA Astrophysics Data System (ADS)

    Wang, Z.; Zipf, A.

    2017-09-01

    With the development of Web 2.0, more and more data related to indoor environments has been collected within the volunteered geographic information (VGI) framework, which creates a need for construction of indoor environments from VGI. In this study, we focus on generating 3D building models from OpenStreetMap (OSM) data, and provide an approach to support construction and visualization of indoor environments on 3D maps. In this paper, we present an algorithm which can extract building information from OSM data, and can construct building structures as well as inner building components (e.g., doors, rooms, and windows). A web application is built to support the processing and visualization of the building models on a 3D map. We test our approach with an indoor dataset collected from the field. The results show the feasibility of our approach and its potentials to provide support for a wide range of applications, such as indoor and outdoor navigation, urban planning, and incident management.

  18. A 3D extinction map of the northern Galactic plane based on IPHAS photometry

    NASA Astrophysics Data System (ADS)

    Sale, S. E.; Drew, J. E.; Barentsen, G.; Farnhill, H. J.; Raddi, R.; Barlow, M. J.; Eislöffel, J.; Vink, J. S.; Rodríguez-Gil, P.; Wright, N. J.

    2014-10-01

    We present a 3D map of extinction in the northern Galactic plane derived using photometry from the INT/WFC Photometric Hα Survey of the northern Galactic plane. The map has fine angular ( ˜ 10 arcmin) and distance (100 pc) sampling allied to a significant depth (≳5 kpc). We construct the map using a method based on a hierarchical Bayesian model described in a previous article by Sale. In addition to mean extinction, we also measure differential extinction, which arises from the fractal nature of the interstellar medium, and show that it will be the dominant source of uncertainty in estimates of extinction to some arbitrary position. The method applied also furnishes us with photometric estimates of the distance, extinction, effective temperature, surface gravity, and mass for ˜38 million stars. Both the extinction map and the catalogue of stellar parameters are made publicly available via http://www.iphas.org/extinction.

  19. Large-scale Inference Problems in Astronomy: Building a 3D Galactic Dust Map

    NASA Astrophysics Data System (ADS)

    Finkbeiner, Douglas

    2016-03-01

    The term ''Big Data'' has become trite, as modern technology has made data sets of terabytes or even petabytes easy to store. Such data sets provide a sandbox in which to develop new statistical inference techniques that can extract interesting results from increasingly rich (and large) databases. I will give an example from my work on mapping the interstellar dust of the Milky Way. 2D emission-based maps have been used for decades to estimate the reddening and emission from interstellar dust, with applications from CMB foregrounds to surveys of large-scale structure. For studies within the Milky Way, however, the third dimension is required. I will present our work on a 3D dust map based on Pan-STARRS1 and 2MASS over 3/4 of the sky (http://arxiv.org/abs/1507.01005), assess its usefulness relative to other dust maps, and discuss future work. Supported by the NSF.

  20. Toward developing a 3D seismic velocity model beneath the SE Tibetan and surrounding regions

    NASA Astrophysics Data System (ADS)

    Sun, Ya; Liu, Jianxin; Niu, Fenglin

    2014-05-01

    We investigated crustal and lithospheric mantle seismic structure beneath the southeast of the Tibetan plateau and the surrounding regions to understand what roles the lower crust and lithospheric mantle have played in shaping area. Firstly, we analyzed receiver function data that were recorded by four provincial seismic networks of the China Earthquake Administration, comprising of 88 broadband stations in the study area, from earthquakes occurring from July 2007 to July 2010. We have employed a new analysis technique for estimating crustal anisotropy and found significant seismic anisotropy with the splitting time of 0.3-0.8s beneath the SE margin of the Tibetan plateau. Both the splitting time and the fast direction were comparable to the result from the SKS/SKKS data, suggesting that crustal anisotropy is the main cause of shear wave splitting of the SKS/SKKS wave. On the other hand, stations located within the surrounding regions, Sichuan, Guizhou and Yunnan showed very little or no crustal anisotropy. However, SKS splitting data showed a sharp change of fast direction from NS in the north to EW in the south between 27° N and 25° N near the YuiGui plateau. This sharp transition was not observed from our crustal anisotropic result, suggesting that the crust and lithospheric mantle have different deformation pattern in this area. Secondly, we applied the finite frequency tomography method to map the upper mantle tomography beneath SE Tibetan plateau, the image show some fast S wave velocity anomalies beneath the SE margin of Tibet with the depth varying from ~90km to 350km, which also identified the decoupled structure between lower crust and lithospheric mantle beneath the SE Tibet margin. Once the crustal anisotropic fast polarization direction was identified, we applied the H-k analysis to determine the crustal thickness and two Vp/Vs ratios corresponding to the fast and slow propagating directions. We found significant difference between the plateau and

  1. Digital mono- and 3D stereo-photogrammetry for geological and geomorphological mapping

    NASA Astrophysics Data System (ADS)

    Scapozza, Cristian; Schenker, Filippo Luca; Castelletti, Claudio; Bozzini, Claudio; Ambrosi, Christian

    2016-04-01

    The generalization of application of digital tools for managing, mapping and updating geological data have become widely accepted in the last decennia. Despite the increasing quality and availability of digital topographical maps, orthorectified aerial photographs (orthophotos) and high resolution (5 up to 0.5 m) Digital Elevation Models (DEMs), a correct recognition of the kind, the nature and the boundaries of geological formations and geomophological landforms, unconsolidated sedimentary deposits or slope instabilities is often very difficult on conventional two-dimensional (2D) products, in particular in steep zones (rock walls and talus slopes), under the forest cover, for a very complex topography and in deeply urbanised zones. In many cases, photo-interpretative maps drawn only by 2D data sets must be improved by field verifications or, at least, by field oblique photographs. This is logical, because our natural perception of the real world is three-dimensional (3D), which is partially disabled by the application of 2D visualization techniques. Here we present some examples of application of digital mapping based on a 3D visualization (for aerial and satellite images photo-interpretation) or on a terrestrial perception by digital mono-photogrammetry (for oblique photographs). The 3D digital mapping was performed thanks to an extension of the software ESRI® ArcGIS™ called ArcGDS™. This methodology was also applied on historical aerial photographs (normally analysed by optical stereo-photogrammetry), which were digitized by scanning and then oriented and aero-triangulated thanks to the ArcGDS™ software, allowing the 3D visualisation and the mapping in a GIS environment (Ambrosi and Scapozza, 2015). The mono-photogrammetry (or monoplotting) is the technique of photogrammetrical georeferentiation of single oblique unrectified photographs, which are related to a DEM. In other words, the monoplotting allows relating each pixel of the photograph to the

  2. Developing a 3D constrained variational analysis method to obtain accurate gridded atmospheric vertical velocity and horizontal advections

    NASA Astrophysics Data System (ADS)

    Tang, S.; Zhang, M.

    2013-12-01

    Based on the constrained variational analysis (CVA) algorithm developed by Zhang and Lin (1997), a 3-dimensional (3D) version of CVA is developed. The new algorithm used gridded surface and TOA observations as constraints to adjust atmospheric state variables in each grid point to satisfy column-integrated mass, moisture and static energy conservation. From the process of adjustment a set of high-quality 3D large-scale forcing data (vertical velocity and horizontal advections) can be derived to drive Single-Column models (SCM), Cloud-Resolving Models (CRM) and Large-Eddy Simulations (LES) to evaluate and improve parameterizations. Since the 3D CVA can adjust gridded state variables from any data source with observed precipitation, radiation and surface fluxes, it also gives a potential possibility to use this algorithm in data assimilation system to assimilate precipitation and radiation data.

  3. A new scheme for joint surface wave and earthquake travel-time inversion and resulting 3-D velocity model for the western North Island, New Zealand

    NASA Astrophysics Data System (ADS)

    Eberhart-Phillips, Donna; Fry, Bill

    2017-08-01

    We have developed a joint inversion of surface wave group velocity (U) and local earthquake travel-time (LET) data and applied it to the North Island, New Zealand, to improve the existing New Zealand wide 3-D seismic velocity model. This approach takes full advantage of the differing sensitivities of surface and body waves. The data are complementary, particularly at shallow depths where LET tomography suffers from vertical smearing and surface wave tomography is susceptible to horizontal smearing. The employed U observations are 2-D models at discrete periods which were developed for Rayleigh wave dispersion curves measured from the 1744 interstation Green's Functions obtained by stacked cross-correlations of broadband ambient noise data. In the volume surrounding each U observation, we distribute numerous points for relating the U observation to the gridded 3-D tomography model, analogous to points along a raypath. The partial derivatives at the points are computed using the U sensitivity kernels for Vp and Vs, with Vs related to Vp and Vp/Vs perturbations. Thus, the U observations are included along with the travel-time observations in a joint inversion to best fit the data and the existing tomography model. The resulting model favors the U where there is little travel-time resolution. The combined inversion used 2949 U observations at 6-16 s period and LET from 1509 earthquakes that extend to 370 km depth, and improved the model fit by reducing the U residual data variance by 62% and the LET by 9%. The resulting model generally has better constrained depth of shallow anomalies, with decreased velocity in the upper 2 km in the western North Island, and slight focusing of crustal high velocity features at 8 km depth. Significantly, the increased resolution in the shallowest 5 km of the model improves the utility of the 3-D model for use in seismic hazard assessment, wave propagation studies, and studies comparing seismic velocities to geological mapping.

  4. Segment-interaction in sprint start: Analysis of 3D angular velocity and kinetic energy in elite sprinters.

    PubMed

    Slawinski, J; Bonnefoy, A; Ontanon, G; Leveque, J M; Miller, C; Riquet, A; Chèze, L; Dumas, R

    2010-05-28

    The aim of the present study was to measure during a sprint start the joint angular velocity and the kinetic energy of the different segments in elite sprinters. This was performed using a 3D kinematic analysis of the whole body. Eight elite sprinters (10.30+/-0.14s 100 m time), equipped with 63 passive reflective markers, realised four maximal 10 m sprints start on an indoor track. An opto-electronic Motion Analysis system consisting of 12 digital cameras (250 Hz) was used to collect the 3D marker trajectories. During the pushing phase on the blocks, the 3D angular velocity vector and its norm were calculated for each joint. The kinetic energy of 16 segments of the lower and upper limbs and of the total body was calculated. The 3D kinematic analysis of the whole body demonstrated that joints such as shoulders, thoracic or hips did not reach their maximal angular velocity with a movement of flexion-extension, but with a combination of flexion-extension, abduction-adduction and internal-external rotation. The maximal kinetic energy of the total body was reached before clearing block (respectively, 537+/-59.3 J vs. 514.9+/-66.0 J; p< or =0.01). These results suggested that a better synchronization between the upper and lower limbs could increase the efficiency of pushing phase on the blocks. Besides, to understand low interindividual variances in the sprint start performance in elite athletes, a 3D complete body kinematic analysis shall be used.

  5. Vertical profiles of the 3-D wind velocity retrieved from multiple wind lidars performing triple range-height-indicator scans

    NASA Astrophysics Data System (ADS)

    Debnath, Mithu; Valerio Iungo, G.; Ashton, Ryan; Brewer, W. Alan; Choukulkar, Aditya; Delgado, Ruben; Lundquist, Julie K.; Shaw, William J.; Wilczak, James M.; Wolfe, Daniel

    2017-02-01

    Vertical profiles of 3-D wind velocity are retrieved from triple range-height-indicator (RHI) scans performed with multiple simultaneous scanning Doppler wind lidars. This test is part of the eXperimental Planetary boundary layer Instrumentation Assessment (XPIA) campaign carried out at the Boulder Atmospheric Observatory. The three wind velocity components are retrieved and then compared with the data acquired through various profiling wind lidars and high-frequency wind data obtained from sonic anemometers installed on a 300 m meteorological tower. The results show that the magnitude of the horizontal wind velocity and the wind direction obtained from the triple RHI scans are generally retrieved with good accuracy. However, poor accuracy is obtained for the evaluation of the vertical velocity, which is mainly due to its typically smaller magnitude and to the error propagation connected with the data retrieval procedure and accuracy in the experimental setup.

  6. Vertical profiles of the 3-D wind velocity retrieved from multiple wind lidars performing triple range-height-indicator scans

    DOE PAGES

    Debnath, Mithu; Iungo, G. Valerio; Ashton, Ryan; ...

    2017-02-06

    Vertical profiles of 3-D wind velocity are retrieved from triple range-height-indicator (RHI) scans performed with multiple simultaneous scanning Doppler wind lidars. This test is part of the eXperimental Planetary boundary layer Instrumentation Assessment (XPIA) campaign carried out at the Boulder Atmospheric Observatory. The three wind velocity components are retrieved and then compared with the data acquired through various profiling wind lidars and high-frequency wind data obtained from sonic anemometers installed on a 300 m meteorological tower. The results show that the magnitude of the horizontal wind velocity and the wind direction obtained from the triple RHI scans are generally retrieved withmore » good accuracy. Furthermore, poor accuracy is obtained for the evaluation of the vertical velocity, which is mainly due to its typically smaller magnitude and to the error propagation connected with the data retrieval procedure and accuracy in the experimental setup.« less

  7. Vertical profiles of the 3-D wind velocity retrieved from multiple wind lidars performing triple range-height-indicator scans

    SciTech Connect

    Debnath, Mithu; Iungo, G. Valerio; Ashton, Ryan; Brewer, W. Alan; Choukulkar, Aditya; Delgado, Ruben; Lundquist, Julie K.; Shaw, William J.; Wilczak, James M.; Wolfe, Daniel

    2017-01-01

    Vertical profiles of 3-D wind velocity are retrieved from triple range-height-indicator (RHI) scans performed with multiple simultaneous scanning Doppler wind lidars. This test is part of the eXperimental Planetary boundary layer Instrumentation Assessment (XPIA) campaign carried out at the Boulder Atmospheric Observatory. The three wind velocity components are retrieved and then compared with the data acquired through various profiling wind lidars and high-frequency wind data obtained from sonic anemometers installed on a 300 m meteorological tower. The results show that the magnitude of the horizontal wind velocity and the wind direction obtained from the triple RHI scans are generally retrieved with good accuracy. However, poor accuracy is obtained for the evaluation of the vertical velocity, which is mainly due to its typically smaller magnitude and to the error propagation connected with the data retrieval procedure and accuracy in the experimental setup.

  8. On the critical one-component velocity regularity criteria to 3-D incompressible MHD system

    NASA Astrophysics Data System (ADS)

    Liu, Yanlin

    2016-05-01

    Let (u , b) be a smooth enough solution of 3-D incompressible MHD system. We prove that if (u , b) blows up at a finite time T*, then for any p ∈ ] 4 , ∞ [, there holds ∫0T* (‖u3(t‧) ‖ H ˙ 1/2 +2/p p + ‖b(t‧) ‖ H ˙ 1/2 +2/p p) dt‧ = ∞. We remark that all these quantities are in the critical regularity of the MHD system.

  9. 3D Velocity and Density Model of the Los Angeles Basin and Spectral Element Method Earthquake Simulations

    NASA Astrophysics Data System (ADS)

    Suess, P.; Shaw, J. H.; Komatitsch, D.; Tromp, J.

    2001-12-01

    We present a 3D velocity model and a 3D density model of the LA basin. The LA basin velocity model was constructed using sonic log and stacking velocity information, provided by oil industry sources and not previously incorporated into southern California velocity models. The density model is based upon a new database of approximately 300 oil industry density logs from across the Los Angeles basin. These logs use gamma ray emissions to determine formation density at samples of about one meter. We have developed an empirical relation between sonic velocity and density by comparing data from approximately 30 wells in which we have both sonic and density logs. For the remaining wells, we have derived relationships between depth and density, and characterized this relationship for the three main stratigraphic sub-divisions of the SCEC Phase 2 model (Quaternary to base Pico Fm., top Repetto Fm. to top Mohnian, and top Mohnian to basement). The density-depth and density-velocity relations will provide independent rules that can be employed to define density and velocity structure in areas where data does not exist, or in other areas with similar lithology to the Los Angeles basin. We use a spectral element method (SEM) for simulation of seismic wave propagation which is currently being implemented on a 156-node Pentium PC cluster at Cal Tech. Preliminary work shows that SEM results using a 1D velocity model for southern California compare very well to discrete-wavenumber results. Both the density structure and velocity structure must be defined in a 3D model for its use in simulations of seismic wave propagation with a spectral element method, to predict the distribution of hazardous ground shaking during large events. Previous work has typically used density values which were predicted by the sonic velocity values; use of our measured density values should provide more accurate ground shaking predictions, and comparison to previous results will provide a useful

  10. Processing of noised residual stress phase maps by using a 3D phase unwrapping algorithm

    NASA Astrophysics Data System (ADS)

    Viotti, Matias R.; Fantin, Analucia V.; Albertazzi, Armando; Willemann, Daniel P.

    2013-07-01

    The measurement of residual stress by using digital speckle pattern interferometry (DSPI) combined with the hole drilling technique is a valuable and fast tool for integrity evaluation of civil structures and mechanical parts. However, in some cases, measured phase maps are badly corrupted by noise which makes phase unwrapping a difficult and unsuccessful task. By following recommendations given by the ASTM E837 standard, 20 consecutive hole steps should be performed for the measurement of non-uniform stresses. As a consequence, 20 difference phase maps along the hole depth will be available for the DSPI technique. An adaptive phase unwrapping algorithm could be used in order to unwrap images following paths localized along well modulated pixels and performing two dimensional phase unwrapping (following paths inside a difference phase map corresponding to a hole step) or 3D phase unwrapping (similar to a temporal phase unwrapping following paths located at well-modulated pixels in a previous or a subsequent hole image). Non-corrupted and corrupted hole-drilling tests were processed with a traditional phase unwrapping algorithm as well as with the proposed 3D approach. Comparisons between unwrapped phase maps and simulated ones have shown that the proposed method gave results with best accordance than 2D results.

  11. A Depth Map Generation Algorithm Based on Saliency Detection for 2D to 3D Conversion

    NASA Astrophysics Data System (ADS)

    Yang, Yizhong; Hu, Xionglou; Wu, Nengju; Wang, Pengfei; Xu, Dong; Rong, Shen

    2017-09-01

    In recent years, 3D movies attract people's attention more and more because of their immersive stereoscopic experience. However, 3D movies is still insufficient, so estimating depth information for 2D to 3D conversion from a video is more and more important. In this paper, we present a novel algorithm to estimate depth information from a video via scene classification algorithm. In order to obtain perceptually reliable depth information for viewers, the algorithm classifies them into three categories: landscape type, close-up type, linear perspective type firstly. Then we employ a specific algorithm to divide the landscape type image into many blocks, and assign depth value by similar relative height cue with the image. As to the close-up type image, a saliency-based method is adopted to enhance the foreground in the image and the method combine it with the global depth gradient to generate final depth map. By vanishing line detection, the calculated vanishing point which is regarded as the farthest point to the viewer is assigned with deepest depth value. According to the distance between the other points and the vanishing point, the entire image is assigned with corresponding depth value. Finally, depth image-based rendering is employed to generate stereoscopic virtual views after bilateral filter. Experiments show that the proposed algorithm can achieve realistic 3D effects and yield satisfactory results, while the perception scores of anaglyph images lie between 6.8 and 7.8.

  12. Validation of 3D Seismic Velocity Models Using the Spectral Element Method

    NASA Astrophysics Data System (ADS)

    Maceira, M.; Larmat, C. S.; Porritt, R. W.; Higdon, D.; Allen, R. M.

    2012-12-01

    For over a decade now, many research institutions have been focusing on addressing the Earth's 3D heterogeneities and complexities by improving tomographic methods. Utilizing dense array datasets, these efforts have led to unprecedented 3D seismic images, but little is done in terms of model validation or to provide any absolute assessment of model uncertainty. Furthermore, the question of "How good is a 3D geophysical model at representing the Earth's true physics? " remains largely not addressed in a time when 3D Earth models are used for societal and energy security. In the last few years, new horizons have opened up in earth structure imaging, with the advent of new numerical and mathematical methods in computational seismology and statistical sciences. We use these methods to tackle the question of model validation taking advantage of unique and extensive High Performance Computing resources available at Los Alamos National Laboratory. We present results from a study focused on validating 3D models for the Western USA generated using both ray-theoretical and finite-frequency approximations. In this manner we do not validate just the model but also the imaging technique. For this test case, we utilize the Dynamic North America (DNA) model family of UC Berkeley, as they are readily available in both formulations. We evaluate model performances by comparing observed and synthetic seismograms generated using the Spectral Element Method. Results show that both, finite-frequency and ray-theoretical DNA09 models, predict the observations well. Waveform cross-correlation coefficients show a difference in performance between models obtained with the finite-frequency or ray-theory limited to smallest periods (<15s), with no perceptible difference at longer periods (50-200s). At those shortest periods, and based on statistical analyses on S-wave phase delay measurements, finite-frequency shows an improvement over ray theory. We are also investigating the breakdown of ray

  13. 3D mapping of somatotopic reorganization with small animal functional MRI

    PubMed Central

    Yu, Xin; Wang, Shumin; Chen, Der-Yow; Dodd, Stephen; Goloshevsky, Artem; Koretsky, Alan P.

    2009-01-01

    There are few in vivo noninvasive methods to study neuroplasticity in animal brains. Functional MRI (fMRI) has been developed for animal brain mapping, but few fMRI studies have analyzed functional alteration due to plasticity in animal models. One major limitation is that fMRI maps are characterized by statistical parametric mapping making the apparent boundary dependent on the statistical threshold used. Here, we developed a method to characterize the location of center-of-mass in fMRI maps that is shown not to be sensitive to statistical threshold. Utilizing centers-of-mass as anchor points to fit the spatial distribution of the BOLD response enabled quantitative group analysis of altered boundaries of functional somatosensory maps. This approach was used to study cortical reorganization in the rat primary somatosensory cortex (S1) after sensory deprivation to the barrel cortex by follicle ablation (F.A.). FMRI demonstrated an enlarged nose S1 representation in the 3D somatotopic functional maps. This result clearly demonstrates that fMRI enables the spatial mapping of functional changes that can characterize multiple regions of S1 cortex and still be sensitive to changes due to plasticity. PMID:19770051

  14. From the Alpine region to the Central Apennines (Italy): 3d upper lithospheric P-velocity model with controlled source seismology data

    NASA Astrophysics Data System (ADS)

    di Stefano, R.; Tondi, R.; de Luca, L.; Lippitsch, R.; Sandoval, S.; Kissling, E.

    2003-04-01

    The complex lithosphere structure of the Italian region leads to difficulties in uniquely interpreting the results obtained with geophysical investigation methods. Relating to P waves velocity models, the geometry of the moho is the main first order structure influencing the interpretation of controlled source seismology (CSS) profile data and results from local earthquake tomography (LET). Moreover, the crustal structures complexities, though poorly resolved by teleseismic tomography, strongly distort teleseismic wave fronts and thus influence teleseismic traveltimes. In 1996 a method was developed by F. Waldhauser to determine the 3D topography and lateral continuity of seismic interfaces using 2D-derived controlled-source seismic reflector data. This method has been successfully applied to retrieve the moho geometry in the complex Alpine region with the aim to obtain the simplest possible 3D structure consistent with all reflector data and error estimates. For the Alpine region a 3D crustal P-wave velocity model has been thus developed from comparative use of published information from active and passive sources surveys. Here we present the extension of this map to the Italian peninsula to include Northern and Central Apennines. Information from the CROP project and from other CSS experiments performed in the past 40 years, both on land and offshore, has been included to cover the whole area. The first order features of Adriatic and Tyrrhenian moho have been recovered and a Vp crustal velocity model has been produced. For the Northern Apennines we compare the newly derived crustal model with the 3D structure of the crust obtained by the inversion of P-wave first arrivals picked on the CSS data, and of gravity data collected on land and off-shore (see Tondi et al., session SM3).

  15. Multislice diffusion mapping for 3-D evolution of cerebral ischemia in a rat stroke model.

    PubMed

    Reith, W; Hasegawa, Y; Latour, L L; Dardzinski, B J; Sotak, C H; Fisher, M

    1995-01-01

    Diffusion-weighted magnetic resonance imaging (DWI) can quantitatively demonstrate cerebral ischemia within minutes after the onset of ischemia. The use of a DWI echo-planar multislice technique in this study and the mapping of the apparent diffusion coefficient (ADC) of water, a reliable indicator of ischemic regions, allow for the detection of the three-dimensional (3-D) evolution of ischemia in a rat stroke model. We evaluated 13 time points from 5 to 180 minutes after occlusion of the middle cerebral artery (MCA) and monitored the 3-D spread of ischemia. Within 5 minutes after the onset of ischemia, regions with reduced ADC values occurred. The core of the lesion, with the lowest absolute ADC values, first appeared in the lateral caudoputamen and frontoparietal cortex, then spread to adjacent areas. The volume of ischemic tissue was 224 +/- 48.5 mm3 (mean +/- SEM) after 180 minutes, ranging from 92 to 320 mm3, and this correlated well with the corrected infarct volume at postmortem (194 +/- 23.1 mm3, r = 0.72, p < 0.05). This experiment demonstrated that 3-D multislice diffusion mapping can detect ischemic regions noninvasively 5 minutes after MCA occlusion and follow the development of ischemia. The distribution of changes in absolute ADC values within the ischemic region can be followed over time, giving important information about the evolution of focal ischemia.

  16. Representation and coding of large-scale 3D dynamic maps

    NASA Astrophysics Data System (ADS)

    Cohen, Robert A.; Tian, Dong; Krivokuća, Maja; Sugimoto, Kazuo; Vetro, Anthony; Wakimoto, Koji; Sekiguchi, Shunichi

    2016-09-01

    combined with depth and color measurements of the surrounding environment. Localization could be achieved with GPS, inertial measurement units (IMU), cameras, or combinations of these and other devices, while the depth measurements could be achieved with time-of-flight, radar or laser scanning systems. The resulting 3D maps, which are composed of 3D point clouds with various attributes, could be used for a variety of applications, including finding your way around indoor spaces, navigating vehicles around a city, space planning, topographical surveying or public surveying of infrastructure and roads, augmented reality, immersive online experiences, and much more. This paper discusses application requirements related to the representation and coding of large-scale 3D dynamic maps. In particular, we address requirements related to different types of acquisition environments, scalability in terms of progressive transmission and efficiently rendering different levels of details, as well as key attributes to be included in the representation. Additionally, an overview of recently developed coding techniques is presented, including an assessment of current performance. Finally, technical challenges and needs for future standardization are discussed.

  17. Development of Mobile Mapping System for 3D Road Asset Inventory.

    PubMed

    Sairam, Nivedita; Nagarajan, Sudhagar; Ornitz, Scott

    2016-03-12

    Asset Management is an important component of an infrastructure project. A significant cost is involved in maintaining and updating the asset information. Data collection is the most time-consuming task in the development of an asset management system. In order to reduce the time and cost involved in data collection, this paper proposes a low cost Mobile Mapping System using an equipped laser scanner and cameras. First, the feasibility of low cost sensors for 3D asset inventory is discussed by deriving appropriate sensor models. Then, through calibration procedures, respective alignments of the laser scanner, cameras, Inertial Measurement Unit and GPS (Global Positioning System) antenna are determined. The efficiency of this Mobile Mapping System is experimented by mounting it on a truck and golf cart. By using derived sensor models, geo-referenced images and 3D point clouds are derived. After validating the quality of the derived data, the paper provides a framework to extract road assets both automatically and manually using techniques implementing RANSAC plane fitting and edge extraction algorithms. Then the scope of such extraction techniques along with a sample GIS (Geographic Information System) database structure for unified 3D asset inventory are discussed.

  18. Development of Mobile Mapping System for 3D Road Asset Inventory

    PubMed Central

    Sairam, Nivedita; Nagarajan, Sudhagar; Ornitz, Scott

    2016-01-01

    Asset Management is an important component of an infrastructure project. A significant cost is involved in maintaining and updating the asset information. Data collection is the most time-consuming task in the development of an asset management system. In order to reduce the time and cost involved in data collection, this paper proposes a low cost Mobile Mapping System using an equipped laser scanner and cameras. First, the feasibility of low cost sensors for 3D asset inventory is discussed by deriving appropriate sensor models. Then, through calibration procedures, respective alignments of the laser scanner, cameras, Inertial Measurement Unit and GPS (Global Positioning System) antenna are determined. The efficiency of this Mobile Mapping System is experimented by mounting it on a truck and golf cart. By using derived sensor models, geo-referenced images and 3D point clouds are derived. After validating the quality of the derived data, the paper provides a framework to extract road assets both automatically and manually using techniques implementing RANSAC plane fitting and edge extraction algorithms. Then the scope of such extraction techniques along with a sample GIS (Geographic Information System) database structure for unified 3D asset inventory are discussed. PMID:26985897

  19. Testing the PV-Theta Mapping Technique in a 3-D CTM Model Simulation

    NASA Technical Reports Server (NTRS)

    Frith, Stacey M.

    2004-01-01

    Mapping lower stratospheric ozone into potential vorticity (PV)- potential temperature (Theta) coordinates is a common technique employed to analyze sparse data sets. Ozone transformed into a flow-following dynamical coordinate system is insensitive to meteorological variations. Therefore data from a wide range of times/locations can be compared, so long as the measurements were made in the same airmass (as defined by PV). Moreover, once a relationship between ozone and PV/Theta is established, a full 3D ozone field can be estimated from this relationship and the 3D analyzed PV field. However, ozone data mapped in this fashion can be hampered by noisy PV fields, or "mis-matches" in the resolution and/or exact location of the ozone and PV measurements. In this study, we investigate the PV-ozone relationship using output from a recent 50-year run of the Goddard 3D chemical transport model (CTM). Model constituents are transported using off-line dynamics from the finite volume general circulation model (FVGCM). By using the internally consistent model PV and ozone fields, we minimize noise due to mis-matching and resolution issues. We calculate correlations between model ozone and PV throughout the stratosphere, and test the sensitivity of the technique to initial data resolution. To do this we degrade the model data to that of various satellite instruments, then compare the mapped fields derived from the sub-sampled data to the full resolution model data. With these studies we can determine appropriate limits for the PV-theta mapping technique in latitude, altitude, and as a function of original data resolution.

  20. Texture mapping 3D models of indoor environments with noisy camera poses

    NASA Astrophysics Data System (ADS)

    Cheng, Peter; Anderson, Michael; He, Stewart; Zakhor, Avideh

    2013-03-01

    Automated 3D modeling of building interiors is used in applications such as virtual reality and environment mapping. Texturing these models allows for photo-realistic visualizations of the data collected by such modeling systems. While data acquisition times for mobile mapping systems are considerably shorter than for static ones, their recovered camera poses often suffer from inaccuracies, resulting in visible discontinuities when successive images are projected onto a surface for texturing. We present a method for texture mapping models of indoor environments that starts by selecting images whose camera poses are well-aligned in two dimensions. We then align images to geometry as well as to each other, producing visually consistent textures even in the presence of inaccurate surface geometry and noisy camera poses. Images are then composited into a final texture mosaic and projected onto surface geometry for visualization. The effectiveness of the proposed method is demonstrated on a number of different indoor environments.

  1. A 3-D shear velocity model of the southern North American and Caribbean plates from ambient noise and earthquake tomography

    NASA Astrophysics Data System (ADS)

    Gaite, B.; Villaseñor, A.; Iglesias, A.; Herraiz, M.; Jiménez-Munt, I.

    2015-02-01

    We use group velocities from earthquake tomography together with group and phase velocities from ambient noise tomography (ANT) of Rayleigh waves to invert for the 3-D shear-wave velocity structure (5-70 km) of the Caribbean (CAR) and southern North American (NAM) plates. The lithospheric model proposed offers a complete image of the crust and uppermost-mantle with imprints of the tectonic evolution. One of the most striking features inferred is the main role of the Ouachita-Marathon-Sonora orogeny front on the crustal seismic structure of the NAM plate. A new imaged feature is the low crustal velocities along the USA-Mexico border. The model also shows a break of the east-west mantle velocity dichotomy of the NAM and CAR plates beneath the Isthmus of the Tehuantepec and the Yucatan Block. High upper-mantle velocities along the Mesoamerican Subduction Zone coincide with inactive volcanic areas while the lowest velocities correspond to active volcanic arcs and thin lithospheric mantle regions.

  2. Virtual 3D tumor marking-exact intraoperative coordinate mapping improve post-operative radiotherapy

    PubMed Central

    2011-01-01

    The quality of the interdisciplinary interface in oncological treatment between surgery, pathology and radiotherapy is mainly dependent on reliable anatomical three-dimensional (3D) allocation of specimen and their context sensitive interpretation which defines further treatment protocols. Computer-assisted preoperative planning (CAPP) allows for outlining macroscopical tumor size and margins. A new technique facilitates the 3D virtual marking and mapping of frozen sections and resection margins or important surgical intraoperative information. These data could be stored in DICOM format (Digital Imaging and Communication in Medicine) in terms of augmented reality and transferred to communicate patient's specific tumor information (invasion to vessels and nerves, non-resectable tumor) to oncologists, radiotherapists and pathologists. PMID:22087558

  3. Estimating 3D positions and velocities of projectiles from monocular views.

    PubMed

    Ribnick, Evan; Atev, Stefan; Papanikolopoulos, Nikolaos P

    2009-05-01

    In this paper, we consider the problem of localizing a projectile in 3D based on its apparent motion in a stationary monocular view. A thorough theoretical analysis is developed, from which we establish the minimum conditions for the existence of a unique solution. The theoretical results obtained have important implications for applications involving projectile motion. A robust, nonlinear optimization-based formulation is proposed, and the use of a local optimization method is justified by detailed examination of the local convexity structure of the cost function. The potential of this approach is validated by experimental results.

  4. Velocities and 3D structure of the SNRs Cas A and SN1987A

    NASA Astrophysics Data System (ADS)

    Dewey, D.

    2009-09-01

    I'll review the observations of SNRs Cas A and SN 1987A made with Chandra's HETG (e.g., Lazendic et al. 2006, ApJ, 651, 250; Dewey et al. 2008, ApJ, 676L, 131; Zhekov et al. 2009, arXiv:0810.5313). For both SNRs, the motion of the shocked, emitting plasma can be measured and put into the context of their 3D structure. For SN 1987A I'll also present analyses suggesting very broad emission, of order 6000 km/s FWHM, and speculate on its reality and possible origin.

  5. 3D mapping of neuronal migration in the embryonic mouse brain with magnetic resonance microimaging.

    PubMed

    Deans, Abby E; Wadghiri, Youssef Zaim; Aristizábal, Orlando; Turnbull, Daniel H

    2015-07-01

    A prominent feature of the developing mammalian brain is the widespread migration of neural progenitor (NP) cells during embryogenesis. A striking example is provided by NP cells born in the ventral forebrain of mid-gestation stage mice, which subsequently migrate long distances to their final positions in the cortex and olfactory bulb. Previous studies have used two-dimensional histological methods, making it difficult to analyze three-dimensional (3D) migration patterns. Unlike histology, magnetic resonance microimaging (micro-MRI) is a non-destructive, quantitative and inherently 3D imaging method for analyzing mouse embryos. To allow mapping of migrating NP cells with micro-MRI, cells were labeled in situ in the medial (MGE) and lateral (LGE) ganglionic eminences, using targeted in utero ultrasound-guided injection of micron-sized particles of iron-oxide (MPIO). Ex vivo micro-MRI and histology were then performed 5-6days after injection, demonstrating that the MPIO had magnetically labeled the migrating NP populations, which enabled 3D visualization and automated segmentation of the labeled cells. This approach was used to analyze the distinct patterns of migration from the MGE and LGE, and to construct rostral-caudal migration maps from each progenitor region. Furthermore, abnormal migratory phenotypes were observed in Nkx2.1(-/-) embryos, most notably a significant increase in cortical neurons derived from the Nkx2.1(-/-) LGE. Taken together, these results demonstrate that MPIO labeling and micro-MRI provide an efficient and powerful approach for analyzing 3D cell migration patterns in the normal and mutant mouse embryonic brain.

  6. Characterizing 3-D flow velocity in evolving pore networks driven by CaCO3 precipitation and dissolution

    NASA Astrophysics Data System (ADS)

    Chojnicki, K. N.; Yoon, H.; Martinez, M. J.

    2015-12-01

    Understanding reactive flow in geomaterials is important for optimizing geologic carbon storage practices, such as using pore space efficiently. Flow paths can be complex in large degrees of geologic heterogeneities across scales. In addition, local heterogeneity can evolve as reactive transport processes alter the pore-scale morphology. For example, dissolved carbon dioxide may react with minerals in fractured rocks, confined aquifers, or faults, resulting in heterogeneous cementation (and/or dissolution) and evolving flow conditions. Both path and flow complexities are important and poorly characterized, making it difficult to determine their evolution with traditional 2-D transport models. Here we characterize the development of 3-D pore-scale flow with an evolving pore configuration due to calcium carbonate (CaCO3) precipitation and dissolution. A simple pattern of a microfluidic pore network is used initially and pore structures will become more complex due to precipitation and dissolution processes. At several stages of precipitation and dissolution, we directly visualize 3-D velocity vectors using micro particle image velocimetry and a laser scanning confocal microscope. Measured 3-D velocity vectors are then compared to 3-D simulated flow fields which will be used to simulate reactive transport. Our findings will highlight the importance of the 3-D flow dynamics and its impact on estimating reactive surface area over time. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000. This material is based upon work supported as part of the Center for Frontiers of Subsurface Energy Security, an Energy Frontier Research Center funded by the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences under Award Number DE-SC0001114.

  7. Mapping cardiac fiber orientations from high-resolution DTI to high-frequency 3D ultrasound

    NASA Astrophysics Data System (ADS)

    Qin, Xulei; Wang, Silun; Shen, Ming; Zhang, Xiaodong; Wagner, Mary B.; Fei, Baowei

    2014-03-01

    The orientation of cardiac fibers affects the anatomical, mechanical, and electrophysiological properties of the heart. Although echocardiography is the most common imaging modality in clinical cardiac examination, it can only provide the cardiac geometry or motion information without cardiac fiber orientations. If the patient's cardiac fiber orientations can be mapped to his/her echocardiography images in clinical examinations, it may provide quantitative measures for diagnosis, personalized modeling, and image-guided cardiac therapies. Therefore, this project addresses the feasibility of mapping personalized cardiac fiber orientations to three-dimensional (3D) ultrasound image volumes. First, the geometry of the heart extracted from the MRI is translated to 3D ultrasound by rigid and deformable registration. Deformation fields between both geometries from MRI and ultrasound are obtained after registration. Three different deformable registration methods were utilized for the MRI-ultrasound registration. Finally, the cardiac fiber orientations imaged by DTI are mapped to ultrasound volumes based on the extracted deformation fields. Moreover, this study also demonstrated the ability to simulate electricity activations during the cardiac resynchronization therapy (CRT) process. The proposed method has been validated in two rat hearts and three canine hearts. After MRI/ultrasound image registration, the Dice similarity scores were more than 90% and the corresponding target errors were less than 0.25 mm. This proposed approach can provide cardiac fiber orientations to ultrasound images and can have a variety of potential applications in cardiac imaging.

  8. On the Quality of Velocity Interpolation Schemes for Marker-In-Cell Methods on 3-D Staggered Grids

    NASA Astrophysics Data System (ADS)

    Kaus, B.; Pusok, A. E.; Popov, A.

    2015-12-01

    The marker-in-cell method is generally considered to be a flexible and robust method to model advection of heterogenous non-diffusive properties (i.e. rock type or composition) in geodynamic problems or incompressible Stokes problems. In this method, Lagrangian points carrying compositional information are advected with the ambient velocity field on an immobile, Eulerian grid. However, velocity interpolation from grid points to marker locations is often performed without preserving the zero divergence of the velocity field at the interpolated locations (i.e. non-conservative). Such interpolation schemes can induce non-physical clustering of markers when strong velocity gradients are present (Jenny et al., 2001) and this may, eventually, result in empty grid cells, a serious numerical violation of the marker-in-cell method. Solutions to this problem include: using larger mesh resolutions and/or marker densities, or repeatedly controlling the marker distribution (i.e. inject/delete), but which does not have an established physical background. To remedy this at low computational costs, Jenny et al. (2001) and Meyer and Jenny (2004) proposed a simple, conservative velocity interpolation (CVI) scheme for 2-D staggered grid, while Wang et al. (2015) extended the formulation to 3-D finite element methods. Here, we follow up with these studies and report on the quality of velocity interpolation methods for 2-D and 3-D staggered grids. We adapt the formulations from both Jenny et al. (2001) and Wang et al. (2015) for use on 3-D staggered grids, where the velocity components have different node locations as compared to finite element, where they share the same node location. We test the different interpolation schemes (CVI and non-CVI) in combination with different advection schemes (Euler, RK2 and RK4) and with/out marker control on Stokes problems with strong velocity gradients, which are discretized using a finite difference method. We show that a conservative formulation

  9. Crustal and upper mantle 3D shear wave velocity structure of the High Lava Plains, Oregon, determined from ambient noise tomography

    NASA Astrophysics Data System (ADS)

    Hanson-Hedgecock, S.; Wagner, L.; Fouch, M. J.; James, D. E.

    2011-12-01

    We present the results of inversions for 3D shear velocity structure of the crust and uppermost mantle beneath the High Lava Plains, Oregon using data from ~300 broadband stations of the High Lava Plains seismic experiment and the EarthScope/USArray Transportable Array (TA). The High Lava Plains (HLP) is a WNW progressive silicic volcanism, initiated ~14.5 Ma near the Owyhee Plateau and is currently active at the Newberry caldera. The Yellowstone Snake River Plain (YSRP) volcanic track is temporally contemporaneous with the HLP, but trends to the northeast, parallel to North American plate motion. The cause of volcanism along the HLP is debated and has been variously attributed to Basin and Range extension, back-arc extension, rollback of the subducting Juan de Fuca plate, and an intra-continental hotspot/plume source. Additionally the relationship between the HLP, YSRP, and Columbia River Basalts (CRB), the three major post-17Ma intracontinental volcanic provinces of the Pacific Northwest, is not well understood. The 3D shear velocity structure of the crust and uppermost mantle to ~65km depth is determined from fundamental mode Rayleigh wave ambient noise phase velocity maps at periods up to 40s. The use of ambient noise tomography with the dense station spacing of the combined High Lava Plains seismic experiment and the EarthScope/USArray Transportable Array (TA) datasets allows the shallow structure of the High Lava Plains to be imaged in finer detail than previous ANT studies that focused on the entire western United States. In the crust, low velocities in central Oregon are observed in association with the Brothers Fault Zone, Jordan and Diamond Craters and Steens Mountain regions in addition to the strong low velocity zone associated with the Cascades to the west. To the east of the HLP, low velocities are observed to about 10km depth in the western SRP. In the eastern SRP we observe a shallow veneer of low velocities underlain by a ~10km thick high velocity

  10. 3D P-wave velocity structure of the crust and relocation of earthquakes in the Lushan, China, source area

    NASA Astrophysics Data System (ADS)

    Yu, Xiangwei; Wang, Xiaona; Zhang, Wenbo

    2016-04-01

    Many researchers have investigated the Lushan source area with geological and geophysical approaches since the 2013 Lushan, China, earthquake happened. Compared with the previous tomographic studies, we have used a much large data set and an updated tomographic method to determine a small scale three-dimensional P wave velocity structure with spatial resolution less than 5km, which plays the important role for understanding the deep structure and the genetic mechanism beneath the Lushan area. The double difference seismic tomography method is applied to 50,711 absolute first arrival P wave arrival times and 7,294,691 high quality relative P arrival times of 5,285 events of Lushan seismic sequence to simultaneously determine the detailed crustal 3D P wave velocity structure and the hypocenter parameters in the Lushan seismic area. This method takes account of the path anomaly biases explicitly by making full use of valuable information of seismic wave propagation jointly with absolute and relative arrival time data. Our results show that the Lushan mainshock locates at 30.28N, 103.98E, with the depth of 16.38km. The front edge of aftershock in the northeast of mainshock present a spade with a steep dip angle, the aftershocks' extended length is about 12km. In the southwest of Lushan mainshock, the front edge of aftershock in low velocity zone slope gently, the aftershocks' extended length is about 23km. Our high-resolution tomographic model not only displays the general features contained in the previous models, but also reveals some new features. The Tianquan, Shuangshi and Daguan line lies in the transition zone between high velocity anomalies to the southeast and low velocity anomalies to the northwest at the ground surface. An obvious high-velocity anomaly is visible in Daxing area. With the depth increasing, Baoxing high velocity anomaly extends to Lingguan, while the southeast of the Tianquan, Shuangshi and Daguan line still shows low velocity. The high-velocity

  11. Dose distribution and mapping with 3D imaging presentation in intraoral and panoramic examinations

    NASA Astrophysics Data System (ADS)

    Chen, Hsiu-Ling; Huang, Yung-Hui; Wu, Tung-Hsin; Wang, Shih-Yuan; Lee, Jason J. S.

    2011-10-01

    In current medical imaging applications, high quality images not only provide more diagnostic value for anatomic delineation but also offer functional information for treatment direction. However, this approach would potentially subscribe higher radiation dose in dental radiographies, which has been putatively associated with low-birth-weight during pregnancy, which affects the hypothalamus-pituitary-thyroid axis or thereby directly affects the reproductive organs. The aim of this study was to apply the high resolution 3-D image mapping technique to evaluate radiation doses from the following aspects: (1) verifying operating parameters of dental X-ray units, (2) measuring the leakage radiations and (3) mapping dose with 3-D radiographic imaging to evaluate dose distribution in head and neck regions. From the study results, we found that (1) leakage radiation from X-ray units was about 21.31±15.24 mR/h (<100 mR/h), (2) error of actual tube voltage for 60 kVp setting was from 0.2% to 6.5%, with an average of 2.5% (<7%) and (3) the error of exposure time for a 0.5-1.5 s setting was within 0.7-8.5%, with an average of 7.3% (<10%) error as well. Our 3-D dose mapping demonstrated that dose values were relatively lower in soft tissues and higher in bone surfaces compared with other investigations. Multiple causes could contribute to these variations, including irradiation geometry, image equipment and type of technique applied, etc. From the results, we also observed that larger accumulated doses were presented in certain critical organs, such as salivary gland, thyroid gland and bone marrow. Potential biological affects associated with these findings warrant further investigation.

  12. Mapping 3-D functional capillary geometry in rat skeletal muscle in vivo

    PubMed Central

    Milkovich, Stephanie; Goldman, Daniel; Ellis, Christopher G.

    2012-01-01

    We have developed a novel mapping software package to reconstruct microvascular networks in three dimensions (3-D) from in vivo video images for use in blood flow and O2 transport modeling. An intravital optical imaging system was used to collect video sequences of blood flow in microvessels at different depths in the tissue. Functional images of vessels were produced from the video sequences and were processed using automated edge tracking software to yield location and geometry data for construction of the 3-D network. The same video sequences were analyzed for hemodynamic and O2 saturation data from individual capillaries in the network. Simple user-driven commands allowed the connection of vessel segments at bifurcations, and semiautomated registration enabled the tracking of vessels across multiple focal planes and fields of view. The reconstructed networks can be rotated and manipulated in 3-D to verify vessel connections and continuity. Hemodynamic and O2 saturation measurements made in vivo can be indexed to corresponding vessels and visualized using colorized maps of the vascular geometry. Vessels in each reconstruction are saved as text-based files that can be easily imported into flow or O2 transport models with complete geometry, hemodynamic, and O2 transport conditions. The results of digital morphometric analysis of seven microvascular networks showed mean capillary diameters and overall capillary density consistent with previous findings using histology and corrosion cast techniques. The described mapping software is a valuable tool for the quantification of in vivo microvascular geometry, hemodynamics, and oxygenation, thus providing rich data sets for experiment-based computational models. PMID:22140042

  13. Self-contained image mapping of placental vasculature in 3D ultrasound-guided fetoscopy.

    PubMed

    Yang, Liangjing; Wang, Junchen; Ando, Takehiro; Kubota, Akihiro; Yamashita, Hiromasa; Sakuma, Ichiro; Chiba, Toshio; Kobayashi, Etsuko

    2016-09-01

    Surgical navigation technology directed at fetoscopic procedures is relatively underdeveloped compared with other forms of endoscopy. The narrow fetoscopic field of views and the vast vascular network on the placenta make examination and photocoagulation treatment of twin-to-twin transfusion syndrome challenging. Though ultrasonography is used for intraoperative guidance, its navigational ability is not fully exploited. This work aims to integrate 3D ultrasound imaging and endoscopic vision seamlessly for placental vasculature mapping through a self-contained framework without external navigational devices. This is achieved through development, integration, and experimentation of novel navigational modules. Firstly, a framework design that addresses the current limitations based on identified gaps is conceptualized. Secondly, integration of navigational modules including (1) ultrasound-based localization, (2) image alignment, and (3) vision-based tracking to update the scene texture map is implemented. This updated texture map is projected to an ultrasound-constructed 3D model for photorealistic texturing of the 3D scene creating a panoramic view of the moving fetoscope. In addition, a collaborative scheme for the integration of the modular workflow system is proposed to schedule updates in a systematic fashion. Finally, experiments are carried out to evaluate each modular variation and an integrated collaborative scheme of the framework. The modules and the collaborative scheme are evaluated through a series of phantom experiments with controlled trajectories for repeatability. The collaborative framework demonstrated the best accuracy (5.2 % RMS error) compared with all the three single-module variations during the experiment. Validation on an ex vivo monkey placenta shows visual continuity of the freehand fetoscopic panorama. The proposed developed collaborative framework and the evaluation study of the framework variations provide analytical insights for

  14. A novel technique for visualizing high-resolution 3D terrain maps

    NASA Astrophysics Data System (ADS)

    Dammann, John

    2007-02-01

    A new technique is presented for visualizing high-resolution terrain elevation data. It produces realistic images at small scales on the order of the data resolution and works particularly well when natural objects are present. Better visualization at small scales opens up new applications, like site surveillance for security and Google Earth-type local search and exploration tasks that are now done with 2-D maps. The large 3-D maps are a natural for high-resolution stereo display. The traditional technique drapes a continuous surface over the regularly spaced elevation values. This technique works well when displaying large areas or in cities with large buildings, but falls apart at small scales or for natural objects like trees. The new technique visualizes the terrain as a set of disjoint square patches. It is combined with an algorithm that identifies smooth areas within the scene. Where the terrain is smooth, such as in grassy areas, roads, parking lots and rooftops, it warps the patches to create a smooth surface. For trees or shrubs or other areas where objects are under-sampled, however, the patches are left disjoint. This has the disadvantage of leaving gaps in the data, but the human mind is very adept at filling in this missing information. It has the strong advantage of making natural terrain look realistic, trees and bushes look stylized but still look natural and are easy to interpret. Also, it does not add artifacts to the map, like filling in blank vertical walls where there are alcoves and other structure and extending bridges and overpasses down to the ground. The new technique is illustrated using very large 1-m resolution 3-D maps from the Rapid Terrain Visualization (RTV) program, and comparisons are made with traditional visualizations using these maps.

  15. Development of a State-Wide 3-D Seismic Tomography Velocity Model for California

    NASA Astrophysics Data System (ADS)

    Thurber, C. H.; Lin, G.; Zhang, H.; Hauksson, E.; Shearer, P.; Waldhauser, F.; Hardebeck, J.; Brocher, T.

    2007-12-01

    We report on progress towards the development of a state-wide tomographic model of the P-wave velocity for the crust and uppermost mantle of California. The dataset combines first arrival times from earthquakes and quarry blasts recorded on regional network stations and travel times of first arrivals from explosions and airguns recorded on profile receivers and network stations. The principal active-source datasets are Geysers-San Pablo Bay, Imperial Valley, Livermore, W. Mojave, Gilroy-Coyote Lake, Shasta region, Great Valley, Morro Bay, Mono Craters-Long Valley, PACE, S. Sierras, LARSE 1 and 2, Loma Prieta, BASIX, San Francisco Peninsula and Parkfield. Our beta-version model is coarse (uniform 30 km horizontal and variable vertical gridding) but is able to image the principal features in previous separate regional models for northern and southern California, such as the high-velocity subducting Gorda Plate, upper to middle crustal velocity highs beneath the Sierra Nevada and much of the Coast Ranges, the deep low-velocity basins of the Great Valley, Ventura, and Los Angeles, and a high- velocity body in the lower crust underlying the Great Valley. The new state-wide model has improved areal coverage compared to the previous models, and extends to greater depth due to the data at large epicentral distances. We plan a series of steps to improve the model. We are enlarging and calibrating the active-source dataset as we obtain additional picks from investigators and perform quality control analyses on the existing and new picks. We will also be adding data from more quarry blasts, mainly in northern California, following an identification and calibration procedure similar to Lin et al. (2006). Composite event construction (Lin et al., in press) will be carried out for northern California for use in conventional tomography. A major contribution of the state-wide model is the identification of earthquakes yielding arrival times at both the Northern California Seismic

  16. 3D mapping of lithium in battery electrodes using neutron activation

    NASA Astrophysics Data System (ADS)

    He, Yuping; Downing, R. Gregory; Wang, Howard

    2015-08-01

    The neutron depth profiling technique based on the neutron activation reaction, 6Li (n, α) 3H, was applied with two dimensional (2D) pinhole aperture scans to spatially map lithium in 3D. The technique was used to study model LiFePO4 electrodes of rechargeable batteries for spatial heterogeneities of lithium in two cathode films that had undergone different electrochemical cycling histories. The method is useful for better understanding the functioning and failure of batteries using lithium as the active element.

  17. Anisotropic 3-D Crustal Velocity Structure of Idaho/ Oregon from a Joint Inversion of Group and Phase Velocities of Love and Rayleigh Waves from Ambient Seismic Noise: Results from the IDOR Project

    NASA Astrophysics Data System (ADS)

    Bremner, P. M.; Panning, M. P.; Russo, R.; Mocanu, V. I.; Stanciu, A. C.; Torpey, M. E.; Hongsresawat, S.; VanDecar, J. C.

    2015-12-01

    We present new 3-D radially anisotropic and isotropic crustal velocity models beneath central Idaho and eastern Oregon. We produced the velocity models from Love and horizontal component Rayleigh wave group and phase velocity measurements on the IDaho/ORegon (IDOR) Passive seismic network, 86 broadband seismic stations, dataset using ambient noise tomography and the methods of Gallego et. al (2010) and Lin et. al (2008). We calculated inter-station group/phase velocities in narrow frequency bands from travel-time measurements of the rotated stacked horizontal component cross-correlations (bandpass filtered between 2 and 30 seconds), which we used to invert for velocity structure beneath the network. We derived group and phase velocity maps for each frequency band using the damped least-squares inversion method of Tarantola (2005), and then jointly inverted for velocity with depth. Moho depths are prescribed in the joint inversions based on receiver functions, also from the IDOR seismic data, and provides a starting crustal velocity model. Goals of our work include refining models of crustal structure in the accreted Blue Mountain terranes in the western study area; determining the depth extent of the Salmon River Suture/West Idaho Shear Zone (WISZ), which crosses north-south through the middle of the network; determining the architecture of the Idaho batholith, an extensive largely crustal-derived pluton; and examining the nature of the autochthonous (?) North American crust and lithosphere beneath and east of the batholith.

  18. Investigating particle phase velocity in a 3D spouted bed by a novel fiber high speed photography method

    NASA Astrophysics Data System (ADS)

    Qian, Long; Lu, Yong; Zhong, Wenqi; Chen, Xi; Ren, Bing; Jin, Baosheng

    2013-07-01

    A novel fiber high speed photography method has been developed to measure particle phase velocity in a dense gas-solid flow. The measurement system mainly includes a fiber-optic endoscope, a high speed video camera, a metal halide light source and a powerful computer with large memory. The endoscope which could be inserted into the reactors is used to form motion images of particles within the measurement window illuminated by the metal halide lamp. These images are captured by the high speed video camera and processed through a series of digital image processing algorithms, such as calibration, denoising, enhancement and binarization in order to improve the image quality. Then particles' instantaneous velocity is figured out by tracking each particle in consecutive frames. Particle phase velocity is statistically calculated according to the probability of particle velocity in each frame within a time period. This system has been applied to the investigation of particles fluidization characteristics in a 3D spouted bed. The experimental results indicate that the particle fluidization feature in the region investigated could be roughly classified into three sections by particle phase vertical velocity and the boundary between the first section and the second is the surface where particle phase velocity tends to be 0, which is in good agreement with the results published in other literature.

  19. Analysis of non linear partially standing waves from 3D velocity measurements

    NASA Astrophysics Data System (ADS)

    Drevard, D.; Rey, V.; Svendsen, Ib; Fraunie, P.

    2003-04-01

    Surface gravity waves in the ocean exhibit an energy spectrum distributed in both frequency and direction of propagation. Wave data collection is of great importance in coastal zones for engineering and scientific studies. In particular, partially standing waves measurements near coastal structures and steep or barred beaches may be a requirement, for instance for morphodynamic studies. The aim of the present study is the analysis of partially standing surface waves icluding non-linear effects. According to 1st order Stokes theory, synchronous measurements of horizontal and vertical velocity components allow calculation of rate of standing waves (Drevard et al, 2003). In the present study, it is demonstrated that for deep water conditions, partially standing 2nd order Stokes waves induced velocity field is still represented by the 1st order solution for the velocity potential contrary to the surface elevation which exhibits harmonic components. For intermediate water depth, harmonic components appear not only in the surface elevation but also in the velocity fields, but their weight remains much smaller, because of the vertical decreasing wave induced motion. For irregular waves, the influence of the spectrum width on the non-linear effects in the analysis is discussed. Keywords: Wave measurements ; reflection ; non-linear effects Acknowledgements: This work was initiated during the stay of Prof. Ib Svendsen, as invited Professor, at LSEET in autumn 2002. This study is carried out in the framework of the Scientific French National Programmes PNEC ART7 and PATOM. Their financial supports are acknowledged References: Drevard, D., Meuret, A., Rey, V. Piazzola, J. And Dolle, A.. (2002). "Partially reflected waves measurements using Acoustic Doppler Velocimeter (ADV)", Submitted to ISOPE 03, Honolulu, Hawaii, May 2003.

  20. Validated 3D Velocity Models in Asia from Joint Regional Body- and Surface-Wave Tomography

    DTIC Science & Technology

    2009-02-17

    90, 150 and 210 km. Some features of note in the new model include: • Crustal thickening beneath the major orogenic zones in the region...the low velocity area with respect to the background model beneath central Iran, which may have implications for the active subduction processes...occurring beneath the Eurasian continental collision zone . The slice on the right at 85°E cuts across the Himalayan Front, from northeastern India into

  1. Slip versus Field-Line Mapping in Describing 3D Reconnection of Coronal Magnetic Fields

    NASA Astrophysics Data System (ADS)

    Titov, V. S.; Mikic, Z.; Torok, T.; Downs, C.; Lionello, R.; Linker, J.

    2015-12-01

    We demonstrate two techniques for describing the structure of the coronal magnetic field and its evolution due to reconnection in numerical 3D simulations of the solar corona and CMEs. These techniques employ two types of mapping of the boundary of the computational domain on itself. One of them is defined at a given time moment via connections of the magnetic field lines to their opposite endpoints. The other mapping, called slip mapping, relates field line endpoints at two different time moments and allows one to identify the slippage of plasma elements due to resistivity across field lines for a given time interval (Titov et al. 2009). The distortion of each of these mappings can be measured by using the so-called squashing factor Q (Titov 2007). The high-Q layers computed for the first and second mappings define, respectively, (quasi-)separatrix surfaces and reconnection fronts in evolving magnetic configurations. Analyzing these structural features, we are able to reveal topologically different domains and reconnected flux systems in the configurations, in particular, open, closed and disconnected magnetic flux tubes, as well as quantify the related magnetic flux transfer. Comparison with observations makes it possible also to relate these features to observed morphological elements such as flare loops and ribbons, and EUV dimmings. We illustrate these general techniques by applying them to particular data-driven MHD simulations. *Research supported by NASA's HSR and LWS Programs, and NSF/SHINE and NSF/FESD.

  2. Pore detection in Computed Tomography (CT) soil 3D images using singularity map analysis

    NASA Astrophysics Data System (ADS)

    Sotoca, Juan J. Martin; Tarquis, Ana M.; Saa Requejo, Antonio; Grau, Juan B.

    2016-04-01

    X-ray Computed Tomography (CT) images have significantly helped the study of the internal soil structure. This technique has two main advantages: 1) it is a non-invasive technique, i.e., it doesńt modify the internal soil structure, and 2) it provides a good resolution. The major disadvantage is that these images are sometimes low-contrast in the solid/pore interface. One of the main problems in analyzing soil structure through CT images is to segment them in solid/pore space. To do so, we have different segmentation techniques at our disposal that are mainly based on thresholding methods in which global or local thresholds are calculated to separate pore space from solid space. The aim of this presentation is to develop the fractal approach to soil structure using "singularity maps" and the "Concentration-Area (CA) method". We will establish an analogy between mineralization processes in ore deposits and morphogenesis processes in soils. Resulting from this analogy a new 3D segmentation method is proposed, the "3D Singularity-CA" method. A comparison with traditional 3D segmentation methods will be performed to show the main differences among them.

  3. Efficient dense blur map estimation for automatic 2D-to-3D conversion

    NASA Astrophysics Data System (ADS)

    Vosters, L. P. J.; de Haan, G.

    2012-03-01

    Focus is an important depth cue for 2D-to-3D conversion of low depth-of-field images and video. However, focus can be only reliably estimated on edges. Therefore, Bea et al. [1] first proposed an optimization based approach to propagate focus to non-edge image portions, for single image focus editing. While their approach produces accurate dense blur maps, the computational complexity and memory requirements for solving the resulting sparse linear system with standard multigrid or (multilevel) preconditioning techniques, are infeasible within the stringent requirements of the consumer electronics and broadcast industry. In this paper we propose fast, efficient, low latency, line scanning based focus propagation, which mitigates the need for complex multigrid or (multilevel) preconditioning techniques. In addition we propose facial blur compensation to compensate for false shading edges that cause incorrect blur estimates in people's faces. In general shading leads to incorrect focus estimates, which may lead to unnatural 3D and visual discomfort. Since visual attention mostly tends to faces, our solution solves the most distracting errors. A subjective assessment by paired comparison on a set of challenging low-depth-of-field images shows that the proposed approach achieves equal 3D image quality as optimization based approaches, and that facial blur compensation results in a significant improvement.

  4. Identifying secondary structures in proteins using NMR chemical shift 3D correlation maps

    NASA Astrophysics Data System (ADS)

    Kumari, Amrita; Dorai, Kavita

    2013-06-01

    NMR chemical shifts are accurate indicators of molecular environment and have been extensively used as aids in protein structure determination. This work focuses on creating empirical 3D correlation maps of backbone chemical shift nuclei for use as identifiers of secondary structure elements in proteins. A correlated database of backbone nuclei chemical shifts was constructed from experimental structural data gathered from entries in the Protein Data Bank (PDB) as well as isotropic chemical shift values from the RefDB database. Rigorous statistical analysis of the maps led to the conclusion that specific correlations between triplets of backbone chemical shifts are best able to differentiate between different secondary structures such as α-helices, β-strands and turns. The method is compared with similar techniques that use NMR chemical shift information as aids in biomolecular structure determination and performs well in tests done on experimental data determined for different types of proteins, including large multi-domain proteins and membrane proteins.

  5. Structured light 3D depth map enhancement and gesture recognition using image content adaptive filtering

    NASA Astrophysics Data System (ADS)

    Ramachandra, Vikas; Nash, James; Atanassov, Kalin; Goma, Sergio

    2013-03-01

    A structured-light system for depth estimation is a type of 3D active sensor that consists of a structured-light projector that projects an illumination pattern on the scene (e.g. mask with vertical stripes) and a camera which captures the illuminated scene. Based on the received patterns, depths of different regions in the scene can be inferred. In this paper, we use side information in the form of image structure to enhance the depth map. This side information is obtained from the received light pattern image reflected by the scene itself. The processing steps run real time. This post-processing stage in the form of depth map enhancement can be used for better hand gesture recognition, as is illustrated in this paper.

  6. Inlining 3d Reconstruction, Multi-Source Texture Mapping and Semantic Analysis Using Oblique Aerial Imagery

    NASA Astrophysics Data System (ADS)

    Frommholz, D.; Linkiewicz, M.; Poznanska, A. M.

    2016-06-01

    This paper proposes an in-line method for the simplified reconstruction of city buildings from nadir and oblique aerial images that at the same time are being used for multi-source texture mapping with minimal resampling. Further, the resulting unrectified texture atlases are analyzed for façade elements like windows to be reintegrated into the original 3D models. Tests on real-world data of Heligoland/ Germany comprising more than 800 buildings exposed a median positional deviation of 0.31 m at the façades compared to the cadastral map, a correctness of 67% for the detected windows and good visual quality when being rendered with GPU-based perspective correction. As part of the process building reconstruction takes the oriented input images and transforms them into dense point clouds by semi-global matching (SGM). The point sets undergo local RANSAC-based regression and topology analysis to detect adjacent planar surfaces and determine their semantics. Based on this information the roof, wall and ground surfaces found get intersected and limited in their extension to form a closed 3D building hull. For texture mapping the hull polygons are projected into each possible input bitmap to find suitable color sources regarding the coverage and resolution. Occlusions are detected by ray-casting a full-scale digital surface model (DSM) of the scene and stored in pixel-precise visibility maps. These maps are used to derive overlap statistics and radiometric adjustment coefficients to be applied when the visible image parts for each building polygon are being copied into a compact texture atlas without resampling whenever possible. The atlas bitmap is passed to a commercial object-based image analysis (OBIA) tool running a custom rule set to identify windows on the contained façade patches. Following multi-resolution segmentation and classification based on brightness and contrast differences potential window objects are evaluated against geometric constraints and

  7. A Novel 2D-to-3D Video Conversion Method Using Time-Coherent Depth Maps

    PubMed Central

    Yin, Shouyi; Dong, Hao; Jiang, Guangli; Liu, Leibo; Wei, Shaojun

    2015-01-01

    In this paper, we propose a novel 2D-to-3D video conversion method for 3D entertainment applications. 3D entertainment is getting more and more popular and can be found in many contexts, such as TV and home gaming equipment. 3D image sensors are a new method to produce stereoscopic video content conveniently and at a low cost, and can thus meet the urgent demand for 3D videos in the 3D entertaiment market. Generally, 2D image sensor and 2D-to-3D conversion chip can compose a 3D image sensor. Our study presents a novel 2D-to-3D video conversion algorithm which can be adopted in a 3D image sensor. In our algorithm, a depth map is generated by combining global depth gradient and local depth refinement for each frame of 2D video input. Global depth gradient is computed according to image type while local depth refinement is related to color information. As input 2D video content consists of a number of video shots, the proposed algorithm reuses the global depth gradient of frames within the same video shot to generate time-coherent depth maps. The experimental results prove that this novel method can adapt to different image types, reduce computational complexity and improve the temporal smoothness of generated 3D video. PMID:26131674

  8. A Novel 2D-to-3D Video Conversion Method Using Time-Coherent Depth Maps.

    PubMed

    Yin, Shouyi; Dong, Hao; Jiang, Guangli; Liu, Leibo; Wei, Shaojun

    2015-06-29

    In this paper, we propose a novel 2D-to-3D video conversion method for 3D entertainment applications. 3D entertainment is getting more and more popular and can be found in many contexts, such as TV and home gaming equipment. 3D image sensors are a new method to produce stereoscopic video content conveniently and at a low cost, and can thus meet the urgent demand for 3D videos in the 3D entertaiment market. Generally, 2D image sensor and 2D-to-3D conversion chip can compose a 3D image sensor. Our study presents a novel 2D-to-3D video conversion algorithm which can be adopted in a 3D image sensor. In our algorithm, a depth map is generated by combining global depth gradient and local depth refinement for each frame of 2D video input. Global depth gradient is computed according to image type while local depth refinement is related to color information. As input 2D video content consists of a number of video shots, the proposed algorithm reuses the global depth gradient of frames within the same video shot to generate time-coherent depth maps. The experimental results prove that this novel method can adapt to different image types, reduce computational complexity and improve the temporal smoothness of generated 3D video.

  9. Lapse-time-dependent coda-wave depth sensitivity to local velocity perturbations in 3-D heterogeneous elastic media

    NASA Astrophysics Data System (ADS)

    Obermann, Anne; Planès, Thomas; Hadziioannou, Céline; Campillo, Michel

    2016-10-01

    In the context of seismic monitoring, recent studies made successful use of seismic coda waves to locate medium changes on the horizontal plane. Locating the depth of the changes, however, remains a challenge. In this paper, we use 3-D wavefield simulations to address two problems: first, we evaluate the contribution of surface- and body-wave sensitivity to a change at depth. We introduce a thin layer with a perturbed velocity at different depths and measure the apparent relative velocity changes due to this layer at different times in the coda and for different degrees of heterogeneity of the model. We show that the depth sensitivity can be modelled as a linear combination of body- and surface-wave sensitivity. The lapse-time-dependent sensitivity ratio of body waves and surface waves can be used to build 3-D sensitivity kernels for imaging purposes. Second, we compare the lapse-time behaviour in the presence of a perturbation in horizontal and vertical slabs to address, for instance, the origin of the velocity changes detected after large earthquakes.

  10. Mapping 3D Large-Scale Structure at z ˜2 with Lyman-α Forest Tomographic Mapping

    NASA Astrophysics Data System (ADS)

    Lee, Khee-Gan; Hennawi, J. F.; White, M.; Croft, R. A.; Prochaska, J. X.; Schlegel, D. J.; Suzuki, N.; Kneib, J.; Bailey, S. J.; Spergel, D. N.; Rix, H.; Strauss, M. A.

    2014-01-01

    The Lyman-α (Lyα) forest absorption at z>2 traces the underlying dark-matter distribution, and with a sufficient density of background sightlines can be used to create 3D tomographic maps of large-scale structure. Since the useful Lyα forest in each sightline spans ˜400-500 h-1Mpc, Lyα forest tomography can efficiently map out large-scale structure at z˜2. The Cosmic Lyman-Alpha Program for the Tomographic Reconstruction of Absorption Probes (CLAPTRAP) will be the first survey to attempt this technique. We aim to obtain spectra for a background grid of faint quasars and bright LBGs at 23D map with similar 3 h-1Mpc resolution to be reconstructed from the data. In a recent paper, we have found that spectra with S/N ˜ 4 per Å are sufficient to make excellent-quality tomographic maps that clearly trace the underlying dark-matter distribution at overdensities of order unity. This requires integrations of several hours on moderate-resolution spectrographs mounted on existing 8-10m telescopes, such as LRIS on the Keck-I telescope and VIMOS on the Very Large Telescopes. We aim to observe ˜1500-2000 background sources over 1 sq deg of the COSMOS field with Lyα forest coverage over 2.0map out a total comoving volume of ˜106h-3Mpc3, equivalent to the zCOSMOS and DEEP2 galaxy redshift maps out to z˜1. The total time requirement is 16 nights on either VLT-VIMOS or Keck-LRIS. The resulting tomographic maps will be the first 3D maps of large-scale structure at z>1. In conjunction with the rich multi-wavelength data from the COSMOS survey, these maps will facilitate the study of galaxies in the context of the large-scale environment, reveal the topology of large-scale structure at high-redshifts, and allow the direct detection of galaxy protoclusters at the intersections of the cosmic web. The

  11. Mass Movement Susceptibility in the Western San Juan Mountains, Colorado: A Preliminary 3-D Mapping Approach

    NASA Astrophysics Data System (ADS)

    Kelkar, K. A.; Giardino, J. R.

    2015-12-01

    Mass movement is a major activity that impacts lives of humans and their infrastructure. Human activity in steep, mountainous regions is especially at risk to this potential hazard. Thus, the identification and quantification of risk by mapping and determining mass movement susceptibility are fundamental in protecting lives, resources and ensuring proper land use regulation and planning. Specific mass-movement processes including debris flows, rock falls, snow avalanches and landslides continuously modify the landscape of the San Juan Mountains. Historically, large-magnitude slope failures have repeatedly occurred in the region. Common triggers include intense, long-duration precipitation, freeze-thaw processes, human activity and various volcanic lithologies overlying weaker sedimentary formations. Predicting mass movement is challenging because of its episodic and spatially, discontinuous occurrence. Landslides in mountain terrain are characterized as widespread, highly mobile and have a long duration of activity. We developed a 3-D model for landslide susceptibility using Geographic Information Systems Technology (GIST). The study area encompasses eight USGS quadrangles: Ridgway, Dallas, Mount Sneffels, Ouray, Telluride, Ironton, Ophir and Silverton. Fieldwork consisted of field reconnaissance mapping at 1:5,000 focusing on surficial geomorphology. Field mapping was used to identify potential locations, which then received additional onsite investigation and photographic documentation of features indicative of slope failure. A GIS module was created using seven terrain spatial databases: geology, surficial geomorphology (digitized), slope aspect, slope angle, vegetation, soils and distance to infrastructure to map risk. The GIS database will help determine risk zonation for the study area. Correlations between terrain parameters leading to slope failure were determined through the GIS module. This 3-D model will provide a spatial perspective of the landscape to

  12. Intra-retinal layer segmentation of 3D optical coherence tomography using coarse grained diffusion map.

    PubMed

    Kafieh, Raheleh; Rabbani, Hossein; Abramoff, Michael D; Sonka, Milan

    2013-12-01

    Optical coherence tomography (OCT) is a powerful and noninvasive method for retinal imaging. In this paper, we introduce a fast segmentation method based on a new variant of spectral graph theory named diffusion maps. The research is performed on spectral domain (SD) OCT images depicting macular and optic nerve head appearance. The presented approach does not require edge-based image information in localizing most of boundaries and relies on regional image texture. Consequently, the proposed method demonstrates robustness in situations of low image contrast or poor layer-to-layer image gradients. Diffusion mapping applied to 2D and 3D OCT datasets is composed of two steps, one for partitioning the data into important and less important sections, and another one for localization of internal layers. In the first step, the pixels/voxels are grouped in rectangular/cubic sets to form a graph node. The weights of the graph are calculated based on geometric distances between pixels/voxels and differences of their mean intensity. The first diffusion map clusters the data into three parts, the second of which is the area of interest. The other two sections are eliminated from the remaining calculations. In the second step, the remaining area is subjected to another diffusion map assessment and the internal layers are localized based on their textural similarities. The proposed method was tested on 23 datasets from two patient groups (glaucoma and normals). The mean unsigned border positioning errors (mean ± SD) was 8.52 ± 3.13 and 7.56 ± 2.95 μm for the 2D and 3D methods, respectively.

  13. Evaluation Model for Pavement Surface Distress on 3d Point Clouds from Mobile Mapping System

    NASA Astrophysics Data System (ADS)

    Aoki, K.; Yamamoto, K.; Shimamura, H.

    2012-07-01

    This paper proposes a methodology to evaluate the pavement surface distress for maintenance planning of road pavement using 3D point clouds from Mobile Mapping System (MMS). The issue on maintenance planning of road pavement requires scheduled rehabilitation activities for damaged pavement sections to keep high level of services. The importance of this performance-based infrastructure asset management on actual inspection data is globally recognized. Inspection methodology of road pavement surface, a semi-automatic measurement system utilizing inspection vehicles for measuring surface deterioration indexes, such as cracking, rutting and IRI, have already been introduced and capable of continuously archiving the pavement performance data. However, any scheduled inspection using automatic measurement vehicle needs much cost according to the instruments' specification or inspection interval. Therefore, implementation of road maintenance work, especially for the local government, is difficult considering costeffectiveness. Based on this background, in this research, the methodologies for a simplified evaluation for pavement surface and assessment of damaged pavement section are proposed using 3D point clouds data to build urban 3D modelling. The simplified evaluation results of road surface were able to provide useful information for road administrator to find out the pavement section for a detailed examination and for an immediate repair work. In particular, the regularity of enumeration of 3D point clouds was evaluated using Chow-test and F-test model by extracting the section where the structural change of a coordinate value was remarkably achieved. Finally, the validity of the current methodology was investigated by conducting a case study dealing with the actual inspection data of the local roads.

  14. Study on 3-D velocity structure of crust and upper mantle in Sichuan-yunnan region, China

    USGS Publications Warehouse

    Wang, C.; Mooney, W.D.; Wang, X.; Wu, J.; Lou, H.; Wang, F.

    2002-01-01

    Based on the first arrival P and S data of 4 625 regional earthquakes recorded at 174 stations dispersed in the Yunnan and Sichuan Provinces, the 3-D velocity structure of crust and upper mantle in the region is determined, incorporating with previous deep geophysical data. In the upper crust, a positive anomaly velocity zone exists in the Sichuan basin, whereas a negative anomaly velocity zone exists in the western Sichuan plateau. The boundary between the positive and negative anomaly zones is the Longmenshan fault zone. The images of lower crust and upper mantle in the Longmenshan fault, Xianshuihe fault, Honghe fault and others appear the characteristic of tectonic boundary, indicating that the faults litely penetrate the Moho discontinuity. The negative velocity anomalies at the depth of 50 km in the Tengchong volcanic area and the Panxi tectonic zone appear to be associated with the temperature and composition variations in the upper mantle. The overall features of the crustal and the upper mantle structures in the Sichuan-Yunnan region are the lower average velocity in both crust and uppermost mantle, the large crustal thickness variations, and the existence of high conductivity layer in the crust or/and upper mantle, and higher geothermal value. All these features are closely related to the collision between the Indian and the Asian plates. The crustal velocity in the Sichuan-Yunnan rhombic block generally shows normal.value or positive anomaly, while the negative anomaly exists in the area along the large strike-slip faults as the block boundary. It is conducive to the crustal block side-pressing out along the faults. In the major seismic zones, the seismicity is relative to the negative anomaly velocity. Most strong earthquakes occurred in the upper-mid crust with positive anomaly or normal velocity, where the negative anomaly zone generally exists below.

  15. Mapping gray-scale image to 3D surface scanning data by ray tracing

    NASA Astrophysics Data System (ADS)

    Li, Peng; Jones, Peter R. M.

    1997-03-01

    The extraction and location of feature points from range imaging is an important but difficult task in machine vision based measurement systems. There exist some feature points which are not able to be detected from pure geometric characteristics, particularly in those measurement tasks related to the human body. The Loughborough Anthropometric Shadow Scanner (LASS) is a whole body surface scanner based on structured light technique. Certain applications of LASS require accurate location of anthropometric landmarks from the scanned data. This is sometimes impossible from existing raw data because some landmarks do not appear in the scanned data. Identification of these landmarks has to resort to surface texture of the scanned object. Modifications to LASS were made to allow gray-scale images to be captured before or after the object was scanned. Two-dimensional gray-scale image must be mapped to the scanned data to acquire the 3D coordinates of a landmark. The method to map 2D images to the scanned data is based on the colinearity conditions and ray-tracing method. If the camera center and image coordinates are known, the corresponding object point must lie on a ray starting from the camera center and connecting to the image coordinate. By intersecting the ray with the scanned surface of the object, the 3D coordinates of a point can be solved. Experimentation has demonstrated the feasibility of the method.

  16. A 3D endoscopy reconstruction as a saliency map for analysis of polyp shapes

    NASA Astrophysics Data System (ADS)

    Ruano, Josue; Martínez, Fabio; Gómez, Martín.; Romero, Eduardo

    2015-01-01

    A first diagnosis of colorectal cancer is performed by examination of polyp shape and appearance during an endoscopy routine procedure. However, the video-endoscopy is highly noisy because exacerbated physiological conditions like increased motility or secretion may limit the visual analysis of lesions. In this work a 3D reconstruction of the digestive tract is proposed, facilitating the polyp shape evaluation by highlighting its surface geometry and allowing an analysis from different perspectives. The method starts by a spatio-temporal map, constructed to group the different regions of the tract by their similar dynamic patterns during the sequence. Then, such map was convolved with a second derivative of a Gaussian kernel that emulates the camera distortion and allows to highlight the polyp surface. The position initialization in each frame of the kernel was computed from expert manual delineation and propagated along the sequence based on. Results show reliable reconstructions, with a salient 3D polyp structure that can then be better observed.

  17. Multi-layer 3D imaging using a few viewpoint images and depth map

    NASA Astrophysics Data System (ADS)

    Suginohara, Hidetsugu; Sakamoto, Hirotaka; Yamanaka, Satoshi; Suyama, Shiro; Yamamoto, Hirotsugu

    2015-03-01

    In this paper, we propose a new method that makes multi-layer images from a few viewpoint images to display a 3D image by the autostereoscopic display that has multiple display screens in the depth direction. We iterate simple "Shift and Subtraction" processes to make each layer image alternately. The image made in accordance with depth map like a volume slicing by gradations is used as the initial solution of iteration process. Through the experiments using the prototype stacked two LCDs, we confirmed that it was enough to make multi-layer images from three viewpoint images to display a 3D image. Limiting the number of viewpoint images, the viewing area that allows stereoscopic view becomes narrow. To broaden the viewing area, we track the head motion of the viewer and update screen images in real time so that the viewer can maintain correct stereoscopic view within +/- 20 degrees area. In addition, we render pseudo multiple viewpoint images using depth map, then we can generate motion parallax at the same time.

  18. Beyond the Map: Enamel Distribution Characterized from 3D Dental Topography

    PubMed Central

    Thiery, Ghislain; Lazzari, Vincent; Ramdarshan, Anusha; Guy, Franck

    2017-01-01

    Enamel thickness is highly susceptible to natural selection because thick enamel may prevent tooth failure. Consequently, it has been suggested that primates consuming stress-limited food on a regular basis would have thick-enameled molars in comparison to primates consuming soft food. Furthermore, the spatial distribution of enamel over a single tooth crown is not homogeneous, and thick enamel is expected to be more unevenly distributed in durophagous primates. Still, a proper methodology to quantitatively characterize enamel 3D distribution and test this hypothesis is yet to be developed. Unworn to slightly worn upper second molars belonging to 32 species of anthropoid primates and corresponding to a wide range of diets were digitized using high resolution microcomputed tomography. In addition, their durophagous ability was scored from existing literature. 3D average and relative enamel thickness were computed based on the volumetric reconstruction of the enamel cap. Geometric estimates of their average and relative enamel-dentine distance were also computed using 3D dental topography. Both methods gave different estimations of average and relative enamel thickness. This study also introduces pachymetric profiles, a method inspired from traditional topography to graphically characterize thick enamel distribution. Pachymetric profiles and topographic maps of enamel-dentine distance are combined to assess the evenness of thick enamel distribution. Both pachymetric profiles and topographic maps indicate that thick enamel is not significantly more unevenly distributed in durophagous species, except in Cercopithecidae. In this family, durophagous species such as mangabeys are characterized by an uneven thick enamel and high pachymetric profile slopes at the average enamel thickness, whereas non-durophagous species such as colobine monkeys are not. These results indicate that the distribution of thick enamel follows different patterns across anthropoids. Primates might

  19. New 3D seismicity maps using chromo-stereoscopy with two alternative freewares

    NASA Astrophysics Data System (ADS)

    Okamoto, Y.

    2011-12-01

    Seismicity maps play a key role in an introduction of geosciences studies or outreach programs. Various techniques are used in order to show earthquakes in a three dimensional field. To use "chromo-stereoscopy" is our simple and easier-making solution. The Chroma Depth 3D Glasses are employed for this purpose. The glasses consist of two transparent blazed grating films covered with a paper holder and cost a little (1 US$). Looking through these glasses, the colored chart turns into three dimensional perspective due to the mechanism that the color codes make a depth dimension with dispersion. We use two complementary freewares to make maps, the GMT (Generic Mapping Tools, Wessel and Smith.1988) and the POV-Ray (Persistence of Vision Pty. Ltd. 2004). The two softwares have their own advantages; the GMT is specialized for map making with simple scripts, while the POV-Ray produces realistic 3D rendering images with more complicated scripts. The earthquakes are plotted with the rainbow color codes depending on their depths in a black background as printed or PC images. Therefore, the red colored shallow earthquakes are float in front and blue colored ones sink deeper. This effect is so amazing that the students who first wear these glasses are strongly moved and fascinated with this simple mechanism. The data used here are from JMA seismicity catalogue and USGS (ANSS) catalogue. The POV-Ray version needs coastline data, so we got them from the Coastline Extractor (NGDC) web site. Also, the POR-Ray has no function to draw lines in three dimensions, so we had to make some trials for showing them in relief. The main target of our map is "the Wadati-Beniof zone", in which the sub-ducting oceanic plate surface is fringed by deeper earthquakes colored yellow, green to blue. The active volcanic regions such as the Hawaii islands or the active fault regions such as the San Andreas Fault are also effective targets of our method. However, since their shallow complicated seismic

  20. The drag and terminal velocity of volcanic ash and lapilli with 3D shape obtained by X-ray microtomography

    NASA Astrophysics Data System (ADS)

    Dioguardi, Fabio; Mele, Daniela; Dellino, Pierfrancesco; Dürig, Tobias

    2017-04-01

    New experiments of falling volcanic particles were performed in order to define drag and terminal velocity models applicable in a wide range of Reynolds number Re. Experiments were carried out with fluids of various viscosities and with particles that cover a wide range of size, density and shape. Particle shape, which strongly influences fluid drag, was measured in 3D by High-resolution X-ray microtomography, by which sphericity and fractal dimension were obtained, the latter used for quantifying the aerodynamic drag of irregular particles for the first time. With this method, the measure of particle shape descriptors proved to be easier and less operator dependent than previously used 2D image particle analyses. Drag laws that make use of the new 3D parameters were obtained by fitting particle data to the experiments, and single-equation terminal velocity models were derived. They work well both at high and low Re (3x10-2 < Re < 104), while earlier formulations made use of different equations at different ranges of Re. The new drag laws are well suited for the modelling of particle transportation both in the eruptive column and pyroclastic density currents, where coarse and fine particles are present, and also in the distal part of the umbrella region, where fine ash is involved in the large-scale domains of atmospheric circulation. A table of the typical values of 3D sphericity and fractal dimension of particles from known plinian, subplinian and ash plume eruptions is presented. Graphs of terminal velocity as a function of grain size are proposed as tools to help volcanologists and atmosphere scientists to model particle transportation of explosive eruptions. Some volcanological application examples are finally presented.

  1. Seismic moment tensor inversion using 3D velocity model and its application to the 2013 Lushan earthquake sequence

    NASA Astrophysics Data System (ADS)

    Zhu, Lupei; Zhou, Xiaofeng

    2016-10-01

    Source inversion of small-magnitude events such as aftershocks or mine collapses requires use of relatively high frequency seismic waveforms which are strongly affected by small-scale heterogeneities in the crust. In this study, we developed a new inversion method called gCAP3D for determining general moment tensor of a seismic source using Green's functions of 3D models. It inherits the advantageous features of the "Cut-and-Paste" (CAP) method to break a full seismogram into the Pnl and surface-wave segments and to allow time shift between observed and predicted waveforms. It uses grid search for 5 source parameters (relative strengths of the isotropic and compensated-linear-vector-dipole components and the strike, dip, and rake of the double-couple component) that minimize the waveform misfit. The scalar moment is estimated using the ratio of L2 norms of the data and synthetics. Focal depth can also be determined by repeating the inversion at different depths. We applied gCAP3D to the 2013 Ms 7.0 Lushan earthquake and its aftershocks using a 3D crustal-upper mantle velocity model derived from ambient noise tomography in the region. We first relocated the events using the double-difference method. We then used the finite-differences method and reciprocity principle to calculate Green's functions of the 3D model for 20 permanent broadband seismic stations within 200 km from the source region. We obtained moment tensors of the mainshock and 74 aftershocks ranging from Mw 5.2 to 3.4. The results show that the Lushan earthquake is a reverse faulting at a depth of 13-15 km on a plane dipping 40-47° to N46° W. Most of the aftershocks occurred off the main rupture plane and have similar focal mechanisms to the mainshock's, except in the proximity of the mainshock where the aftershocks' focal mechanisms display some variations.

  2. Quasi-3D Resistivity Imaging - Results from Geophysical Mapping and Forward Modeling

    NASA Astrophysics Data System (ADS)

    Schwindt, D.; Kneisel, C.

    2009-04-01

    2D resistivity tomography has proven to be a reliable tool in detecting, characterizing and mapping of permafrost, especially in joint application with other geophysical methods, e.g. seismic refraction. For many permafrost related problems a 3D image of the subsurface is of interest. Possibilities of quasi-3D imaging by collating several 2D ERT files into one quasi-3D file were tested. Data acquisition took place on a vegetated scree slope with isolated permafrost lenses in the Bever Valley, Swiss Alps. 21 2D-electrical arrays were applied with an electrode spacing of 5 m and a parallel spacing of 20 and 30 m using the Wenner electrode configuration. Refraction seismic was applied parallel to every second ERT array, with a geophone spacing of 5 m for validation. Results of quasi-3D imaging indicate that the most important factors influencing data quality are parallel spacing and number of right-angled crossing profiles. While the quasi-3D images generated of 2D-files with a parallel spacing of 20 m provide an interpretable image, 30 m spacing results in a blurred illustration of resistivity structures. To test the influence of crossing profiles quasi-3D images were inverted using only parallel measured data files as well as images containing right-angled crossing transects. Application of crossing profiles is of great importance, because the number of model blocks with interpolated resistivity values between parallel profiles is minimized. In case of two adjacent high resistivity anomalies a quasi-3D image consisting of parallel measured transects only illustrates one anomaly. A crossing profile provides information to differentiate the anomalies. Forward modeling was used to prove these assumptions and to improve the application of 2D ERT with regard to quasi-3D imaging. Main focus was on electrode and parallel spacing, the influence of crossing transects and the applicability of different array types. A number of 2D ERT profiles were generated, using the forward

  3. On the location of microseismic sources in instable rock slope areas: heterogeneous vs. homogenous 3D velocity models

    NASA Astrophysics Data System (ADS)

    Coviello, Velio; Manconi, Andrea; Occhiena, Cristina; Arattano, Massimo; Scavia, Claudio

    2013-04-01

    Rock-falls are one of the most common and hazardous phenomena occurring in mountainous areas. The formation of cracks in rocks is often accompanied by a sudden release of energy, which propagates in form of elastic waves and can be detected by a suitable transducer array. Therefore, geophones are among the most effective monitoring devices to investigate eventual precursors of rock-fall phenomena. However, the identification of an efficient procedure to forecast rock-fall occurrence in space and time is still an open challenge. In this study, we aim at developing an efficient procedure to locate microseismic sources relevant to cracking mechanisms, and thus gather indications on eventual precursors of rock-fall phenomena. Common seismic location tools usually implement homogeneous or multilayered velocity models but, in case of high slope gradients and heavily fractured rock masses, these simplifications may lead to errors on the correct estimation of the source location. Thus, we analyzed how the consideration of 3D material properties on the propagation medium may influence the location. In the framework of the Alcotra 2007-2013 Project MASSA (Medium And Small Size rock-fall hazard Assessment), a monitoring system composed by 8 triaxial geophones was installed in 2010 at the J.A. Carrel hut (3829 m a.s.l., Matterhorn, NW Italian Alps) and during the first year of operation the network recorded more than 600 natural events that exceeded a fixed threshold [1]. Despite the harsh environmental conditions of the study area, eighteen points distributed as uniformly as possible in space were selected for hammering. The artificial source dataset of known coordinates was used to constrain a 3D heterogeneous velocity model through a Simultaneous Iterative Reconstructive Technique. In order to mitigate the intrinsic uncertainties of the inversion procedure, bootstrapping was performed to extend the dataset and a statistical analysis was issued to improve the model

  4. Present-Day 3D Velocity Field of Eastern North America Based on Continuous GPS Observations

    NASA Astrophysics Data System (ADS)

    Goudarzi, Mohammad Ali; Cocard, Marc; Santerre, Rock

    2016-07-01

    The Saint Lawrence River valley in eastern Canada was studied using observations of continuously operating GPS (CGPS) stations. The area is one of the most seismically active regions in eastern North America characterized by many earthquakes, which is also subject to an ongoing glacial isostatic adjustment. We present the current three-dimensional velocity field of eastern North America obtained from more than 14 years (9 years on average) of data at 112 CGPS stations. Bernese GNSS and GITSA software were used for CGPS data processing and position time series analysis, respectively. The results show the counterclockwise rotation of the North American plate in the No-Net-Rotation model with the average of 16.8 ± 0.7 mm/year constrained to ITRF 2008. We also present an ongoing uplift model for the study region based on the present-day CGPS observations. The model shows uplift all over eastern Canada with the maximum rate of 13.7 ± 1.2 mm/year and subsidence to the south mainly over northern USA with a typical rate of -1 to -2 mm/year and the minimum value of -2.7 ± 1.4 mm/year. We compared our model with the rate of radial displacements from the ICE-5G model. Both models agree within 0.02 mm/year at the best stations; however, our model shows a systematic spatial tilt compared to ICE-5G. The misfits between two models amount to the maximum relative subsidence of -6.1 ± 1.1 mm/year to the east and maximum relative uplift of 5.9 ± 2.7 mm/year to the west. The intraplate horizontal velocities are radially outward from the centers of maximum uplift and are inward to the centers of maximum subsidence with the typical velocity of 1-1.6 ± 0.4 mm/year that is in agreement with the ICE-5G model to the first order.

  5. Stardust Under a Microscope - 3D maps of Wild 2/81P Cometary Samples in Aerogel

    NASA Astrophysics Data System (ADS)

    White, Amanda J.; Ebel, Denton

    2016-01-01

    The NASA Stardust mission to comet Wild 2 returned to Earth in 2006 with cometary and interstellar material captured in aerogel. Cometary particles impacted an aerogel collector at a relative velocity of 6.1 km/s, creating three-dimensional (3D) impact tracks of melted and crushed aerogel, void space, and fragmented cometary material. Each track represents the history of a unique hypervelocity capture event. The nature of each impact, including the original state of the impactor, is recorded in track morphology and material distribution. Using a combination of 3D morphological data, chemical data, and microphysical models, it is possible to reconstruct track formation events and a model of the original impactor.The focus of this work is to fully characterize whole tracks both morphologically and chemically using solely non-destructive methods. To achieve this, we combine high-resolution laser scanning confocal microscope (LSCM) 3D imaging with synchrotron X-ray fluorescence (SXRF) chemical mapping. We are also beginning to incorporate Raman spectroscopy to perform mineral phase analysis of fine track wall material. Using a Zeiss LSM 710 LSCM located in the American Museum of Natural History, we have imaged the morphology of over a dozen, whole Stardust tracks at high resolution (<80 nm/pixel in XY). We obtain the distribution of fine material along the track walls both quickly and without disturbing the sample. Complementary chemical data is acquired using the GSECARS X-ray microbe on beamline 13-IDE at the Advance Photon Source (APS) of Argonne National Laboratory. X-ray fluorescence maps of each track were collected with 100ms/pixel dwell time at a resolution of 1 or 2 micron/pixel. Many tracks were tilted and mapped a second time for stereo measurements.A thorough understanding of how cometary material and aerogel is distributed along tracks is required to understand the events which occurred after impact and to back-calculate properties of the original impactor

  6. Re-Dimensional Thinking in Earth Science: From 3-D Virtual Reality Panoramas to 2-D Contour Maps

    ERIC Educational Resources Information Center

    Park, John; Carter, Glenda; Butler, Susan; Slykhuis, David; Reid-Griffin, Angelia

    2008-01-01

    This study examines the relationship of gender and spatial perception on student interactivity with contour maps and non-immersive virtual reality. Eighteen eighth-grade students elected to participate in a six-week activity-based course called "3-D GeoMapping." The course included nine days of activities related to topographic mapping.…

  7. Re-Dimensional Thinking in Earth Science: From 3-D Virtual Reality Panoramas to 2-D Contour Maps

    ERIC Educational Resources Information Center

    Park, John; Carter, Glenda; Butler, Susan; Slykhuis, David; Reid-Griffin, Angelia

    2008-01-01

    This study examines the relationship of gender and spatial perception on student interactivity with contour maps and non-immersive virtual reality. Eighteen eighth-grade students elected to participate in a six-week activity-based course called "3-D GeoMapping." The course included nine days of activities related to topographic mapping.…

  8. SU-F-BRB-05: Collision Avoidance Mapping Using Consumer 3D Camera

    SciTech Connect

    Cardan, R; Popple, R

    2015-06-15

    Purpose: To develop a fast and economical method of scanning a patient’s full body contour for use in collision avoidance mapping without the use of ionizing radiation. Methods: Two consumer level 3D cameras used in electronic gaming were placed in a CT simulator room to scan a phantom patient set up in a high collision probability position. A registration pattern and computer vision algorithms were used to transform the scan into the appropriate coordinate systems. The cameras were then used to scan the surface of a gantry in the treatment vault. Each scan was converted into a polygon mesh for collision testing in a general purpose polygon interference algorithm. All clinically relevant transforms were applied to the gantry and patient support to create a map of all possible collisions. The map was then tested for accuracy by physically testing the collisions with the phantom in the vault. Results: The scanning fidelity of both the gantry and patient was sufficient to produce a collision prediction accuracy of 97.1% with 64620 geometry states tested in 11.5 s. The total scanning time including computation, transformation, and generation was 22.3 seconds. Conclusion: Our results demonstrate an economical system to generate collision avoidance maps. Future work includes testing the speed of the framework in real-time collision avoidance scenarios. Research partially supported by a grant from Varian Medical Systems.

  9. Indoor Localization Algorithms for an Ambulatory Human Operated 3D Mobile Mapping System

    SciTech Connect

    Corso, N; Zakhor, A

    2013-12-03

    Indoor localization and mapping is an important problem with many applications such as emergency response, architectural modeling, and historical preservation. In this paper, we develop an automatic, off-line pipeline for metrically accurate, GPS-denied, indoor 3D mobile mapping using a human-mounted backpack system consisting of a variety of sensors. There are three novel contributions in our proposed mapping approach. First, we present an algorithm which automatically detects loop closure constraints from an occupancy grid map. In doing so, we ensure that constraints are detected only in locations that are well conditioned for scan matching. Secondly, we address the problem of scan matching with poor initial condition by presenting an outlier-resistant, genetic scan matching algorithm that accurately matches scans despite a poor initial condition. Third, we present two metrics based on the amount and complexity of overlapping geometry in order to vet the estimated loop closure constraints. By doing so, we automatically prevent erroneous loop closures from degrading the accuracy of the reconstructed trajectory. The proposed algorithms are experimentally verified using both controlled and real-world data. The end-to-end system performance is evaluated using 100 surveyed control points in an office environment and obtains a mean accuracy of 10 cm. Experimental results are also shown on three additional datasets from real world environments including a 1500 meter trajectory in a warehouse sized retail shopping center.

  10. Simulated square kilometre array maps from Galactic 3D-emission models

    NASA Astrophysics Data System (ADS)

    Sun, X. H.; Reich, W.

    2009-11-01

    Context: Planning of the Square Kilometre Array (SKA) requires simulations of the expected sky emission at arcsec angular resolution to evaluate its scientific potential, to constrain its technical realization in the best possible way, and to guide the observing strategy. Aims: We simulate high-resolution total intensity, polarization, and rotation measure (RM) maps of selected fields based on our recent global 3D-model of Galactic emission. Methods: Simulations of diffuse Galactic emission were conducted using the hammurabi code modified for arcsec angular resolution patches towards various Galactic directions. The random magnetic field components are set to follow a Kolmogorov-like power-law spectrum. We analysed the simulated maps in terms of their probability density functions (PDFs) and structure functions. Results: We present maps for various Galactic longitudes and latitudes at 1.4 GHz, which is the frequency where deep SKA surveys are proposed. The maps are about 1.5 ° in size and have an angular resolution of about 1.6 °. Total intensity emission is smoother in the plane than at high latitudes because of the different contributions from the regular and random magnetic field. The high-latitude fields show more extended polarized emission and RM structures than those in the plane, where patchy emission structures dominate on very small scales. The RM PDFs in the plane are close to Gaussians, but clearly deviate from that at high latitudes. The RM structure functions show smaller amplitudes and steeper slopes towards high latitudes. These results emerge from much more turbulent cells being passed through by the line-of-sights in the plane. Although the simulated random magnetic field components distribute in 3D, the magnetic field spectrum extracted from the structure functions of RMs conforms to 2D in the plane and approaches 3D at high latitudes. This is partly related to the outer scale of the turbulent magnetic field, but mainly to the different lengths

  11. A Robust Method to Detect Zero Velocity for Improved 3D Personal Navigation Using Inertial Sensors

    PubMed Central

    Xu, Zhengyi; Wei, Jianming; Zhang, Bo; Yang, Weijun

    2015-01-01

    This paper proposes a robust zero velocity (ZV) detector algorithm to accurately calculate stationary periods in a gait cycle. The proposed algorithm adopts an effective gait cycle segmentation method and introduces a Bayesian network (BN) model based on the measurements of inertial sensors and kinesiology knowledge to infer the ZV period. During the detected ZV period, an Extended Kalman Filter (EKF) is used to estimate the error states and calibrate the position error. The experiments reveal that the removal rate of ZV false detections by the proposed method increases 80% compared with traditional method at high walking speed. Furthermore, based on the detected ZV, the Personal Inertial Navigation System (PINS) algorithm aided by EKF performs better, especially in the altitude aspect. PMID:25831086

  12. 3D viscosity maps for Greenland and effect on GRACE mass balance estimates

    NASA Astrophysics Data System (ADS)

    van der Wal, Wouter; Xu, Zheng

    2016-04-01

    The GRACE satellite mission measures mass loss of the Greenland ice sheet. To correct for glacial isostatic adjustment numerical models are used. Although generally found to be a small signal, the full range of possible GIA models has not been explored yet. In particular, low viscosities due to a wet mantle and high temperatures due to the nearby Iceland hotspot could have a significant effect on GIA gravity rates. The goal of this study is to present a range of possible viscosity maps, and investigate the effect on GRACE mass balance estimates. Viscosity is derived using flow laws for olivine. Mantle temperature is computed from global seismology models, based on temperature derivatives for different mantle compositions. An indication for grain sizes is obtained by xenolith findings at a few locations. We also investigate the weakening effect of the presence of melt. To calculate gravity rates, we use a finite-element GIA model with the 3D viscosity maps and the ICE-5G loading history. GRACE mass balances for mascons in Greenland are derived with a least-squares inversion, using separate constraints for the inland and coastal areas in Greenland. Biases in the least-squares inversion are corrected using scale factors estimated from a simulation based on a surface mass balance model (Xu et al., submitted to The Cryosphere). Model results show enhanced gravity rates in the west and south of Greenland with 3D viscosity maps, compared to GIA models with 1D viscosity. The effect on regional mass balance is up to 5 Gt/year. Regional low viscosity can make present-day gravity rates sensitivity to ice thickness changes in the last decades. Therefore, an improved ice loading history for these time scales is needed.

  13. 2D/3D registration for X-ray guided bronchoscopy using distance map classification.

    PubMed

    Xu, Di; Xu, Sheng; Herzka, Daniel A; Yung, Rex C; Bergtholdt, Martin; Gutierrez, Luis F; McVeigh, Elliot R

    2010-01-01

    In X-ray guided bronchoscopy of peripheral pulmonary lesions, airways and nodules are hardly visible in X-ray images. Transbronchial biopsy of peripheral lesions is often carried out blindly, resulting in degraded diagnostic yield. One solution of this problem is to superimpose the lesions and airways segmented from preoperative 3D CT images onto 2D X-ray images. A feature-based 2D/3D registration method is proposed for the image fusion between the datasets of the two imaging modalities. Two stereo X-ray images are used in the algorithm to improve the accuracy and robustness of the registration. The algorithm extracts the edge features of the bony structures from both CT and X-ray images. The edge points from the X-ray images are categorized into eight groups based on the orientation information of their image gradients. An orientation dependent Euclidean distance map is generated for each group of X-ray feature points. The distance map is then applied to the edge points of the projected CT images whose gradient orientations are compatible with the distance map. The CT and X-ray images are registered by matching the boundaries of the projected CT segmentations to the closest edges of the X-ray images after the orientation constraint is satisfied. Phantom and clinical studies were carried out to validate the algorithm's performance, showing a registration accuracy of 4.19(± 0.5) mm with 48.39(± 9.6) seconds registration time. The algorithm was also evaluated on clinical data, showing promising registration accuracy and robustness.

  14. Near-wall 3D velocity measurements above biomimetic shark skin denticles using Digital In-line Holographic Microscopy

    NASA Astrophysics Data System (ADS)

    Toloui, Mostafa; Brajkovic, David; Hong, Jiarong

    2014-11-01

    Digital In-line Holography is employed to image 3D flow structures in the vicinity of a transparent rough surface consisting of closely packed biomimetic shark skin denticles as roughness elements. The 3D printed surface replicates the morphological features of real shark skin, and the denticles have a geometrical scale of 2 mm, i.e. 10 times of the real ones. In order to minimize optical aberrations near the fluid-roughness interface and enable flow measurements around denticles, the optical refractive index of the fluid medium is maintained the same as that of the denticle model in an index-matched flow facility using NaI solution as the working fluid. The experiment is conducted in a 1.2 m long test section with 50 mm × 50 mm cross section. The sampling volume is located in the downstream region of a shark skin replica of 12'' stretch where the turbulent flow is fully-developed and the transitional effect from smooth to the rough surface becomes negligible. Several instantaneous realizations of the 3D velocity field are obtained and are used to illustrate turbulent coherent structures induced by shark-skin denticles. This information will provide insights on the hydrodynamic function of shark's unique surface ornamentation.

  15. Resolving the 3D velocity field inside a Roughness Sublayer in a turbulent channel flow using HPIV

    NASA Astrophysics Data System (ADS)

    Talapatra, Siddharth; Katz, Joseph

    2010-11-01

    Microscopic holographic PIV is used to measure the 3D velocity field within the roughness sublayer of a turbulent channel flow at Reτ of 3400. Recording holograms through a rough surface is facilitated by matching the optical refractive index of the rough wall with that of the working fluid, a concentrated solution of NaI in water. The pyramidal roughness height is k=0.45mm, the sample volume size is 3.2x1.8x1.8mm^3, the long dimension being in the streamwise direction, and the wall-normal range is -0.333D grid to obtain vectors with a spacing of 60μm or 8.5 wall units. The data show that at y/k<0.5, there is a preferred channeling of the flow along paths that circumvent the pyramid crest lines. Planar vorticity distribution from different perspectives as well as 3D isosurfaces show that the near wall region is flooded by quasi-streamwise vortices that are aligned at shallow angles and have a typical streamwise extent of 1-2k.

  16. Study on moderate earthquake risk of the Xinfengjiang reservoir from 3D P-wave velocity structure and current seismicity parameters

    NASA Astrophysics Data System (ADS)

    Ye, Xiuwei; Wang, Xiaona; Huang, Yuanmin; Liu, Jiping; Tan, Zhengguang

    2017-06-01

    In this paper, we determined the Xingfengjiang Reservoir earthquake sequence location from June 2007 to July 2014 and 3D P-wave velocity structure by a simultaneous inversion method. On that basis, we mapped the b-value 3D distribution. The results show the low b-value distribution consists with the high velocity zone(HVZ) and most earthquakes occurred around the HVZ. Under the reservoir dam there is a strong tectonic deformation zone, as the centre exit Renzishi fault F2, Nanshan - Aotou faults F4, Heyuan fault F1 and Shijiao-xingang-baitian fault F5. M6.1 Xinfengjiang earthquake, 19 Mar 1962, occurred in the strong tectonic deformation zone, and now the zone b≥0.7, so a short period of the original earthquake occur more unlikely. The b-value of the HVZ under Xichang(in the northwest corner of XFJ Reservoir) ranges between 0.4 to 0.7 suggesting the rate of stress accumulations is greater than the speed of seismic energy release since 2012. We don’t exclude the possibility that the HVZ becomes the seismogenic asperity, and will occur M≥5 earthquake.

  17. Fast quantitative susceptibility mapping using 3D EPI and total generalized variation.

    PubMed

    Langkammer, Christian; Bredies, Kristian; Poser, Benedikt A; Barth, Markus; Reishofer, Gernot; Fan, Audrey Peiwen; Bilgic, Berkin; Fazekas, Franz; Mainero, Caterina; Ropele, Stefan

    2015-05-01

    Quantitative susceptibility mapping (QSM) allows new insights into tissue composition and organization by assessing its magnetic property. Previous QSM studies have already demonstrated that magnetic susceptibility is highly sensitive to myelin density and fiber orientation as well as to para- and diamagnetic trace elements. Image resolution in QSM with current approaches is limited by the long acquisition time of 3D scans and the need for high signal to noise ratio (SNR) to solve the dipole inversion problem. We here propose a new total-generalized-variation (TGV) based method for QSM reconstruction, which incorporates individual steps of phase unwrapping, background field removal and dipole inversion in a single iteration, thus yielding a robust solution to the reconstruction problem. This approach has beneficial characteristics for low SNR data, allowing for phase data to be rapidly acquired with a 3D echo planar imaging (EPI) sequence. The proposed method was evaluated with a numerical phantom and in vivo at 3 and 7 T. Compared to total variation (TV), TGV-QSM enforced higher order smoothness which yielded solutions closer to the ground truth and prevented stair-casing artifacts. The acquisition time for images with 1mm isotropic resolution and whole brain coverage was 10s on a clinical 3 Tesla scanner. In conclusion, 3D EPI acquisition combined with single-step TGV reconstruction yields reliable QSM images of the entire brain with 1mm isotropic resolution in seconds. The short acquisition time combined with the robust reconstruction may enable new QSM applications in less compliant populations, clinical susceptibility tensor imaging, and functional resting state examinations. Copyright © 2015 Elsevier Inc. All rights reserved.

  18. B1-insensitive T2 mapping of healthy thigh muscles using a T2-prepared 3D TSE sequence

    PubMed Central

    Klupp, Elisabeth; Weidlich, Dominik; Schlaeger, Sarah; Baum, Thomas; Cervantes, Barbara; Deschauer, Marcus; Kooijman, Hendrik; Rummeny, Ernst J.; Zimmer, Claus; Kirschke, Jan S.; Karampinos, Dimitrios C.

    2017-01-01

    Purpose To propose a T2-prepared 3D turbo spin echo (T2prep 3D TSE) sequence for B1-insensitive skeletal muscle T2 mapping and compare its performance with 2D and 3D multi-echo spin echo (MESE) for T2 mapping in thigh muscles of healthy subjects. Methods The performance of 2D MESE, 3D MESE and the proposed T2prep 3D TSE in the presence of transmit B1 and B0 inhomogeneities was first simulated. The thigh muscles of ten young and healthy subjects were then scanned on a 3 T system and T2 mapping was performed using the three sequences. Transmit B1-maps and proton density fat fraction (PDFF) maps were also acquired. The subjects were scanned three times to assess reproducibility. T2 values were compared among sequences and their sensitivity to B1 inhomogeneities was compared to simulation results. Correlations were also determined between T2 values, PDFF and B1. Results The left rectus femoris muscle showed the largest B1 deviations from the nominal value (from 54.2% to 92.9%). Significant negative correlations between T2 values and B1 values were found in the left rectus femoris muscle for 3D MESE (r = -0.72, p<0.001) and 2D MESE (r = -0.71, p<0.001), but not for T2prep 3D TSE (r = -0.32, p = 0.09). Reproducibility of T2 expressed by root mean square coefficients of variation (RMSCVs) were equal to 3.5% in T2prep 3D TSE, 2.6% in 3D MESE and 2.4% in 2D MESE. Significant differences between T2 values of 3D sequences (T2prep 3D TSE and 3D MESE) and 2D MESE were found in all muscles with the highest values for 2D MESE (p<0.05). No significant correlations were found between PDFF and T2 values. Conclusion A strong influence of an inhomogeneous B1 field on the T2 values of 3D MESE and 2D MESE was shown, whereas the proposed T2prep 3D TSE gives B1-insensitive and reproducible thigh muscle T2 mapping. PMID:28196133

  19. B1-insensitive T2 mapping of healthy thigh muscles using a T2-prepared 3D TSE sequence.

    PubMed

    Klupp, Elisabeth; Weidlich, Dominik; Schlaeger, Sarah; Baum, Thomas; Cervantes, Barbara; Deschauer, Marcus; Kooijman, Hendrik; Rummeny, Ernst J; Zimmer, Claus; Kirschke, Jan S; Karampinos, Dimitrios C

    2017-01-01

    To propose a T2-prepared 3D turbo spin echo (T2prep 3D TSE) sequence for B1-insensitive skeletal muscle T2 mapping and compare its performance with 2D and 3D multi-echo spin echo (MESE) for T2 mapping in thigh muscles of healthy subjects. The performance of 2D MESE, 3D MESE and the proposed T2prep 3D TSE in the presence of transmit B1 and B0 inhomogeneities was first simulated. The thigh muscles of ten young and healthy subjects were then scanned on a 3 T system and T2 mapping was performed using the three sequences. Transmit B1-maps and proton density fat fraction (PDFF) maps were also acquired. The subjects were scanned three times to assess reproducibility. T2 values were compared among sequences and their sensitivity to B1 inhomogeneities was compared to simulation results. Correlations were also determined between T2 values, PDFF and B1. The left rectus femoris muscle showed the largest B1 deviations from the nominal value (from 54.2% to 92.9%). Significant negative correlations between T2 values and B1 values were found in the left rectus femoris muscle for 3D MESE (r = -0.72, p<0.001) and 2D MESE (r = -0.71, p<0.001), but not for T2prep 3D TSE (r = -0.32, p = 0.09). Reproducibility of T2 expressed by root mean square coefficients of variation (RMSCVs) were equal to 3.5% in T2prep 3D TSE, 2.6% in 3D MESE and 2.4% in 2D MESE. Significant differences between T2 values of 3D sequences (T2prep 3D TSE and 3D MESE) and 2D MESE were found in all muscles with the highest values for 2D MESE (p<0.05). No significant correlations were found between PDFF and T2 values. A strong influence of an inhomogeneous B1 field on the T2 values of 3D MESE and 2D MESE was shown, whereas the proposed T2prep 3D TSE gives B1-insensitive and reproducible thigh muscle T2 mapping.

  20. Global Transport of Aerosol and CO: Initial 3-D Simulations of MAPS, TOMS, and AVHRR

    NASA Technical Reports Server (NTRS)

    Chatfield, Robert B.; Li, Long; Hipskind, Stephen R. (Technical Monitor)

    1997-01-01

    Carbon monoxide concentrations and aerosol properties provide the tracers of global tropospheric perturbation by humankind that are most easily observed from satellite platforms. Aircraft field observations are additionally needed for us to simulate and understand the patterns observed. We report on our accumulating experience in making detailed, situation-specific, 3-D simulations of these tropospheric constituents as observed from the MAPS CO sensor, the Advanced Very High Resolution Radiometer (AVHRR) aerosol scattering data, and the Total Ozone Mapping Spectrometer (TOMS) absorbing-aerosol information. We have found a strong complimentarity of satellite and aircraft data in this effort, and recommend modelers use: (1) satellite data to pose initial questions; (2) aircraft data for modelers' first detailed simulations; and (3) a return to satellite data for global generalization. This work provides one example. Our main tools are the MM5 numerical model for meteorological assimilation and GRACES, our NASA Ames tracer-chemistry model, which incorporates emissions estimates. We report on several six-week simulations of global biomass burning effects as observed in the MAPS October 1994 dataset, and show the usefulness of two aircraft datasets, the TRACE-A (1992) and PEM-Tropics missions of NASA's Global Tropospheric Experiment. Additional information is contained in the original extended abstract.

  1. 3D mechanical modeling of the GPS velocity field along the North Anatolian fault

    NASA Astrophysics Data System (ADS)

    Provost, Ann-Sophie; Chéry, Jean; Hassani, Riad

    2003-04-01

    The North Anatolian fault (NAF) extends over 1500 km in a complex tectonic setting. In this region of the eastern Mediterranean, collision of the Arabian, African and Eurasian plates resulted in creation of mountain ranges (i.e. Zagros, Caucasus) and the westward extrusion of the Anatolian block. In this study we investigate the effects of crustal rheology on the long-term displacement rate along the NAF. Heat flow and geodetic data are used to constrain our mechanical model, built with the three-dimensional finite element code ADELI. The fault motion occurs on a material discontinuity of the model which is controlled by a Coulomb-type friction. The rheology of the lithosphere is composed of a frictional upper crust and a viscoelastic lower crust. The lithosphere is supported by a hydrostatic pressure at its base (representing the asthenospheric mantle). We model the long-term deformation of the surroundings of the NAF by adjusting the effective fault friction and also the geometry of the surface fault trace. To do so, we used a frictional range of 0.0-0.2 for the fault, and a viscosity varying between 10 19 and 10 21 Pa s. One of the most striking results of our rheological tests is that the upper part of the fault is locked if the friction exceeds 0.2. By comparing our results with geodetic measurements [McClusky et al., J. Geophys. Res. B 105 (2000) 5695-5719] and tectonic observations, we have defined a realistic model in which the displacement rate on the NAF reaches ˜17 mm/yr for a viscosity of 10 19 Pa s and a fault friction of 0.05. This strongly suggests that the NAF is a weak fault like the San Andreas fault in California. Adding topography with its corresponding crustal root does not induce gravity flow of Anatolia. Rather, it has the counter-intuitive effect of decreasing the westward Anatolian escape. We find a poor agreement between our calculated velocity field and what is observed with GPS in the Marmara and the Aegean regions. We suspect that the

  2. Mapping the True 3D Morphology of Deep-Sea Canyons

    NASA Astrophysics Data System (ADS)

    Huvenne, V. A.; Masson, D.; Tyler, P. A.; Huehnerbach, V.

    2010-12-01

    The importance of submarine canyons as ecosystem hotspots and sediment transport pathways has been recognised for decades (e.g. Heezen et al., 1955; Vetter & Dayton, 1998). However, studying canyon systems in detail is a challenge, because of the complexity and steepness of the terrain. Acoustic surveys are hampered by side-echoes, while the high slope angles cause most types of sampling equipment, deployed from surface vessels, to fail. Ship-borne bathymetric surveys tend to represent the canyon topography in an overly smoothed way as a result of their limited resolution in deep water compared to the scale of the terrain variability. Moreover, it is clear that overhanging cliffs cannot be mapped correctly with traditional, downward looking multibeam echosounders. The increasing availability of underwater vehicles, however, opens new opportunities. During summer 2009, we mapped several submarine canyon habitats in detail, using the UK deep-water Remotely Operated Vehicle (ROV) ISIS. In particular, we developed a new methodology to map vertical cliffs and overhangs by placing the high-resolution Simrad SM2000 multibeam system of the ROV in a forward-looking position rather than in the traditional downward-looking configuration. The cliff morphology was then mapped by moving the ROV laterally in parallel passes at different depths. Repeating this approach at different distances from the cliff face, we obtained maps of varying resolution and extent. The low resolution maps provide an overview of the general geological framework, while individual strata and faunal colonies can be recognised on the highest resolution maps. Using point-cloud models, we combined the ship-borne bathymetry with the ROV-based data, in order to obtain a true 3D seabed morphology of the canyon study site, which can be used for fly-throughs, geomorphological analysis or habitat mapping. With this approach, we could visualise the spatial structure and density distribution of a unique and

  3. 3D Anisotropic Velocity Tomography of a Water Saturated Rock under True-Triaxial Stress in the Laboratory

    NASA Astrophysics Data System (ADS)

    Ghofrani Tabari, M.; Goodfellow, S. D.; Nasseri, M. B.; Young, R.

    2013-12-01

    A cubic specimen of water saturated Fontainebleau Sandstone is tested in the laboratory under true-triaxial loading where three different principal stresses are applied under drained conditions. Due to the loading arrangement, closure and opening of the pre-existing cracks in the rock, as well as creation and growth of the aligned cracks cause elliptical anisotropy and distributed heterogeneities. A Geophysical Imaging Cell equipped with an Acoustic Emission monitoring system is employed to image velocity structure of the sample during the experiment through repeated transducer to transducer non-destructive ultrasonic surveys. Apparent P-wave velocities along the rock body are calculated in different directions and shown in stereonet plots which demonstrate an overall anisotropy of the sample. The apparent velocities in the main three orthogonal cubic directions are used as raw data for building a mean spatial distribution model of anisotropy ratios. This approach is based on the concept of semi-principal axes in an elliptical anisotropic model and appointing two ratios between the three orthogonal velocities in each of the cubic grid cells. The spatial distribution model of anisotropy ratios are used to calculate the anisotropic ray-path segment matrix elements (Gij). These contain segment lengths of the ith ray in the jth cell in three dimensions where, length of each ray in each cell is computed for one principal direction based on the dip and strike of the ray and these lengths differ from the ones in an isotropic G Matrix. 3D strain of the squeezed rock and the consequent geometrical deformation is also included in the ray-path segment matrix. A Singular Value Decomposition (SVD) method is used for inversion from the data space of apparent velocities to the model space of P-wave propagation velocities in the three principal directions. Finally, spatial variation and temporal evolution of induced damages in the rock, representing uniformly distributed or

  4. Mapping Nearby Terrain in 3D by Use of a Grid of Laser Spots

    NASA Technical Reports Server (NTRS)

    Padgett, Curtis; Liebe, Carl; Chang, Johnny; Brown, Kenneth

    2007-01-01

    A proposed optoelectronic system, to be mounted aboard an exploratory robotic vehicle, would be used to generate a three-dimensional (3D) map of nearby terrain and obstacles for purposes of navigating the vehicle across the terrain and avoiding the obstacles. The difference between this system and the other systems would lie in the details of implementation. In this system, the illumination would be provided by a laser. The beam from the laser would pass through a two-dimensional diffraction grating, which would divide the beam into multiple beams propagating in different, fixed, known directions. These beams would form a grid of bright spots on the nearby terrain and obstacles. The centroid of each bright spot in the image would be computed. For each such spot, the combination of (1) the centroid, (2) the known direction of the light beam that produced the spot, and (3) the known baseline would constitute sufficient information for calculating the 3D position of the spot.

  5. GPR data processing for 3D fracture mapping in a marble quarry (Thassos, Greece)

    NASA Astrophysics Data System (ADS)

    Grandjean, G.; Gourry, J. C.

    1996-11-01

    Ground Penetrating Radar (GPR) has been successfully applied to detect and map fractures in marble quarries. The aim was to distinguish quickly intact marketable marble areas from fractured ones in order to improve quarry management. The GPR profiling method was chosen because it is non destructive and quickly provides a detailed image of the subsurface. It was performed in domains corresponding to future working areas in real quarry-exploitation conditions. Field surveying and data processing were adapted to the local characteristics of the fractures: E-W orientation, sub-vertical dip, and karst features. After the GPR profiles had been processed, using methods adapted from seismics (amplitude compensation, filtering and Fourier migration), the interpreted fractures from a 12 × 24 × 15 m zone were incorporated into a 3D model. Due to the low electrical conductivity of the marble, GPR provides penetration depths of about 8 and 15 m, and resolutions of about 1 and 5 cm for frequencies of 900 and 300 MHz respectively. The detection power thus seems to be sufficient to recommend use of this method. As requested by the quarriers, the 3D representation can be used directly by themselves to locate high- or low-quality marble areas. Comparison between the observed surface fractures and the fractures detected using GPR showed reasonable correlation.

  6. Non-destructive mapping of grain orientations in 3D by laboratory X-ray microscopy

    PubMed Central

    McDonald, S. A.; Reischig, P.; Holzner, C.; Lauridsen, E. M.; Withers, P. J.; Merkle, A. P.; Feser, M.

    2015-01-01

    The ability to characterise crystallographic microstructure, non-destructively and in three-dimensions, is a powerful tool for understanding many aspects related to damage and deformation mechanisms in polycrystalline materials. To this end, the technique of X-ray diffraction contrast tomography (DCT) using monochromatic synchrotron and polychromatic laboratory X-ray sources has been shown to be capable of mapping crystal grains and their orientations non-destructively in 3D. Here we describe a novel laboratory-based X-ray DCT modality (LabDCT), enabling the wider accessibility of the DCT technique for routine use and in-depth studies of, for example, temporal changes in crystallographic grain structure non-destructively over time through ‘4D’ in situ time-lapse studies. The capability of the technique is demonstrated by studying a titanium alloy (Ti-β21S) sample. In the current implementation the smallest grains that can be reliably detected are around 40 μm. The individual grain locations and orientations are reconstructed using the LabDCT method and the results are validated against independent measurements from phase contrast tomography and electron backscatter diffraction respectively. Application of the technique promises to provide important insights related to the roles of recrystallization and grain growth on materials properties as well as supporting 3D polycrystalline modelling of materials performance. PMID:26494523

  7. 3D mapping of nanoscale electric potentials in semiconductor structures using electron-holographic tomography

    NASA Astrophysics Data System (ADS)

    Wolf, Daniel; Lubk, Axel; Prete, Paola; Lovergine, Nico; Lichte, Hannes

    2016-09-01

    Off-axis electron holography (EH) is a powerful method for mapping projected electric potentials, such as built-in potentials in semiconductor devices, in two dimensions (2D) at nanometer resolution. However, not well-defined thickness profiles, surface effects, and composition changes of the sample under investigation complicate the interpretation of the projected potentials. Here, we demonstrate how these problems can be overcome by combining EH with tomographic techniques, that is, electron holographic tomography (EHT), reconstructing electric potentials in 3D. We present EHT reconstructions of an n-type MOSFET including its dopant-related built-in potentials inside the device, as well as of a GaAs/AlGaAs core-multishell nanowire containing a 5 nm thick quantum well tube.

  8. 3D elemental mapping of materials and structures by laboratory scale spectroscopic X-ray tomography

    NASA Astrophysics Data System (ADS)

    Egan, C. K.; Jacques, S. D. M.; Wilson, M. D.; Veale, M. C.; Seller, P.; Pattrick, R. A. D.; Withers, P. J.; Cernik, R. J.

    2017-06-01

    Using a microfocus X-ray tube and pixelated energy-resolving detector it is possible to measure the X-ray absorption spectrum of a material with high spatial resolution. Given sufficient energy resolution in the detector it is possible to detect and identify absorption edges which are characteristic to individual chemical elements. Using computed tomography the three dimensional (3D) internal elemental chemistry of an object can be reconstructed. The application of spectroscopic X-ray tomography is demonstrated by mapping distribution of heavy elements inside a mineralised ore sample. We correlate and validate this data with high resolution X-ray tomography and energy-dispersive X-ray spectroscopy data.

  9. 2D-3D μXRF elemental mapping of archeological samples

    NASA Astrophysics Data System (ADS)

    Hampai, D.; Liedl, A.; Cappuccio, G.; Capitolo, E.; Iannarelli, M.; Massussi, M.; Tucci, S.; Sardella, R.; Sciancalepore, A.; Polese, C.; Dabagov, S. B.

    2017-07-01

    Recently opened for users at LNF XLab-Frascati a μ XRF station, named ;Rainbow X-ray; - RXR, has been optimized for most of X-ray analytical research fields. The basic principle of the station is in the use of various geometrical combinations of polycapillary optics for X-ray beam shaping (focusing/collimation) at specially designed laboratory unit. In this work we have presented the results of archaeological studies on the artifacts of Paleolithic period and Iron Age (9th century BC to the midway of the 8th BC). The elemental analysis of these artifacts has been first performed by compact laboratory setup. Superficial (2D) and bulk (3D) micro-fluorescence mapping provides useful informations for the geologists in order to identify the possible artifacts provenience and origin. The results presented in this work are a part of wider anthropological/archeological investigations aimed at the understanding of social and economical relations of prehistorical communities.

  10. 3D-Mapping of Dolomitized Structures in Lower Cambrian Phosphorites

    NASA Astrophysics Data System (ADS)

    Hippler, Dorothee; Stammeier, Jessica A.; Brunner, Roland; Rosc, Jördis; Franz, Gerhard; Dietzel, Martin

    2016-04-01

    Dolomitization is a widespread phenomenon in ancient sedimentary rocks, particularly close to the Precambrian-Cambrian boundary. Dolomite can form in synsedimentary or hydrothermal environments, preferentially via the replacement of solid carbonate precursor phases. Synsedimentary dolomite formation is often associated with microbial activity, such as bacterial sulfate reduction or methanogenesis. In this study, we investigate dolomitic phosphorites from the Lowermost Cambrian Tal Group, Mussoori Syncline, Lesser Himalaya, India, using micro-CT 3D-mapping, in order to unravel the complex diagenetic history of the rocks. The selected sample shows alternating layering of phosphatic mudstones and sparitic dolostone, in which brecciated layers of phosphorite or phosphatic mudstones are immersed in a dolomite-rich matrix. Lamination occurs on a sub-millimetre scale, with lamination sometimes wavy to crinkly. This fabric is interpreted as former microbial mats, providing the environment for early diagenetic phosphatization. Preliminary electron backscatter imaging with scanning microscopy revealed that dolomite crystals often occur in spherical to ellipsoidal structures, typically with a high porosity. This dolomite is associated with botryoidal apatite, organic matter and small amounts of calcite. Micro-CT 3D-mappings reveal that dolomite structures are cigar-shaped, elongated and up to 600 μm long. They are further arranged in a Mikado-like oriented framework spanning a layer thickness of a few millimetres. Analyses of ambient pore space, with similar elongated outlines and filled with organic matter, suggest a potential coherence of ambient pore space and shape of the dolomite structures. Allowing for other associated mineral phases, such as pyrite and silicates, and their spatial distribution, the present approach can be used to unravel distinct diagenetic reaction pathways, and might thus constrain the proxy potential of these Lower Cambrian dolomitic phosphorites

  11. A global 3D P-velocity model of the Earth's crust and mantle for improved event location.

    SciTech Connect

    Ballard, Sanford; Encarnacao, Andre Villanova; Begnaud, Michael A.; Rowe, Charlotte A.; Lewis, Jennifer E.; Young, Christopher John; Chang, Marcus C.; Hipp, James Richard

    2010-04-01

    To test the hypothesis that high quality 3D Earth models will produce seismic event locations which are more accurate and more precise, we are developing a global 3D P wave velocity model of the Earth's crust and mantle using seismic tomography. In this paper, we present the most recent version of our model, SALSA3D (SAndia LoS Alamos) version 1.4, and demonstrate its ability to reduce mislocations for a large set of realizations derived from a carefully chosen set of globally-distributed ground truth events. Our model is derived from the latest version of the Ground Truth (GT) catalog of P and Pn travel time picks assembled by Los Alamos National Laboratory. To prevent over-weighting due to ray path redundancy and to reduce the computational burden, we cluster rays to produce representative rays. Reduction in the total number of ray paths is > 55%. The model is represented using the triangular tessellation system described by Ballard et al. (2009), which incorporates variable resolution in both the geographic and radial dimensions. For our starting model, we use a simplified two layer crustal model derived from the Crust 2.0 model over a uniform AK135 mantle. Sufficient damping is used to reduce velocity adjustments so that ray path changes between iterations are small. We obtain proper model smoothness by using progressive grid refinement, refining the grid only around areas with significant velocity changes from the starting model. At each grid refinement level except the last one we limit the number of iterations to prevent convergence thereby preserving aspects of broad features resolved at coarser resolutions. Our approach produces a smooth, multi-resolution model with node density appropriate to both ray coverage and the velocity gradients required by the data. This scheme is computationally expensive, so we use a distributed computing framework based on the Java Parallel Processing Framework, providing us with {approx}400 processors. Resolution of our model

  12. 3D numerical simulations of negative hydrogen ion extraction using realistic plasma parameters, geometry of the extraction aperture and full 3D magnetic field map

    NASA Astrophysics Data System (ADS)

    Mochalskyy, S.; Wünderlich, D.; Ruf, B.; Franzen, P.; Fantz, U.; Minea, T.

    2014-02-01

    Decreasing the co-extracted electron current while simultaneously keeping negative ion (NI) current sufficiently high is a crucial issue on the development plasma source system for ITER Neutral Beam Injector. To support finding the best extraction conditions the 3D Particle-in-Cell Monte Carlo Collision electrostatic code ONIX (Orsay Negative Ion eXtraction) has been developed. Close collaboration with experiments and other numerical models allows performing realistic simulations with relevant input parameters: plasma properties, geometry of the extraction aperture, full 3D magnetic field map, etc. For the first time ONIX has been benchmarked with commercial positive ions tracing code KOBRA3D. A very good agreement in terms of the meniscus position and depth has been found. Simulation of NI extraction with different e/NI ratio in bulk plasma shows high relevance of the direct negative ion extraction from the surface produced NI in order to obtain extracted NI current as in the experimental results from BATMAN testbed.

  13. 3D stellar reddening map from 2MASS photometry: An improved version

    NASA Astrophysics Data System (ADS)

    Gontcharov, G. A.

    2017-07-01

    An improved version of the 3D stellar reddening map in a space with a radius of 1200 pc around the Sun and within 600 pc of the Galactic midplane is presented. As in the previous 2010 and 2012 versions of the map, photometry with an accuracy better than 0.05 m in the J and Ks bands for more than 70 million stars from the 2MASS catalogue is used in the new version. However, the data reduction technique is considerably more complicated. As before, an analysis of the distribution of stars near the main-sequence turnoff on the ( J - Ks)- Ks diagram, where they form a distribution maximum, provides a basis for the method. The shift of this maximum, i.e., the mode ( J - Ks), along ( J - Ks) and Ks, given the spatial variations of the mean dereddened color ( J - Ks)0 of these stars, is interpreted as a growth of the reddening with increasing distance. The main distinction of the new method is that instead of the fixed mean absolute magnitude, dereddened color, distance, and reddening for each cell, the individual values of these quantities are calculated for each star by iterations when solving the system of equations relating them. This has allowed one to increase the random accuracy of the map to 0.01 m and its spatial resolution to 20 pc in coordinates and distance and to 1° in longitude and latitude. Comparison with other reddening estimates for the same spatial cells and Gaia DR1 TGAS stars shows that the constructed map is one of the best maps for the space under consideration. Its systematic errors have been estimated to be σ( E( J - Ks)) = 0.025 m , or σ( E( B - V)) = 0.04 m . The main purpose of the map is to analyze the characteristics of Galactic structures, clouds, and cloud complexes. For this purpose, the reddening map within each spatial cell has also been computed by analyzing the reddening along each line of sight.

  14. A New Ionosphere Tomography Algorithm with Two-Grids Virtual Observations Constraints and 3D Velocity Profile

    NASA Astrophysics Data System (ADS)

    Kong, Jian; Yao, Yibin; Shum, Che-Kwan

    2014-05-01

    Due to the sparsity of world's GNSS stations and limitations of projection angles, GNSS-based ionosphere tomography is a typical ill-posed problem. There are two main ways to solve this problem. Firstly the joint inversion method combining multi-source data is one of the effective ways. Secondly using a priori or reference ionosphere models, e.g., IRI or GIM models, as the constraints to improve the state of normal equation is another effective approach. The traditional way for adding constraints with virtual observations can only solve the problem of sparse stations but the virtual observations still lack horizontal grid constraints therefore unable to fundamentally improve the near-singularity characteristic of the normal equation. In this paper, we impose a priori constraints by increasing the virtual observations in n-dimensional space, which can greatly reduce the condition number of the normal equation. Then after the inversion region is gridded, we can form a stable structure among the grids with loose constraints. We then further consider that the ionosphere indeed changes within certain temporal scale, e.g., two hours. In order to establish a more sophisticated and realistic ionosphere model and obtain the real time ionosphere electron density velocity (IEDV) information, we introduce the grid electron density velocity parameters, which can be estimated with electron density parameters simultaneously. The velocity parameters not only can enhance the temporal resolution of the ionosphere model thereby reflecting more elaborate structure (short-term disturbances) under ionosphere disturbances status, but also provide a new way for the real-time detection and prediction of ionosphere 3D changes. We applied the new algorithm to the GNSS data collected in Europe for tomography inversion for ionosphere electron density and velocity at 2-hour resolutions, which are consistent throughout the whole day variation. We then validate the resulting tomography model

  15. True-3D Accentuating of Grids and Streets in Urban Topographic Maps Enhances Human Object Location Memory

    PubMed Central

    Edler, Dennis; Bestgen, Anne-Kathrin; Kuchinke, Lars; Dickmann, Frank

    2015-01-01

    Cognitive representations of learned map information are subject to systematic distortion errors. Map elements that divide a map surface into regions, such as content-related linear symbols (e.g. streets, rivers, railway systems) or additional artificial layers (coordinate grids), provide an orientation pattern that can help users to reduce distortions in their mental representations. In recent years, the television industry has started to establish True-3D (autostereoscopic) displays as mass media. These modern displays make it possible to watch dynamic and static images including depth illusions without additional devices, such as 3D glasses. In these images, visual details can be distributed over different positions along the depth axis. Some empirical studies of vision research provided first evidence that 3D stereoscopic content attracts higher attention and is processed faster. So far, the impact of True-3D accentuating has not yet been explored concerning spatial memory tasks and cartography. This paper reports the results of two empirical studies that focus on investigations whether True-3D accentuating of artificial, regular overlaying line features (i.e. grids) and content-related, irregular line features (i.e. highways and main streets) in official urban topographic maps (scale 1/10,000) further improves human object location memory performance. The memory performance is measured as both the percentage of correctly recalled object locations (hit rate) and the mean distances of correctly recalled objects (spatial accuracy). It is shown that the True-3D accentuating of grids (depth offset: 5 cm) significantly enhances the spatial accuracy of recalled map object locations, whereas the True-3D emphasis of streets significantly improves the hit rate of recalled map object locations. These results show the potential of True-3D displays for an improvement of the cognitive representation of learned cartographic information. PMID:25679208

  16. True-3D accentuating of grids and streets in urban topographic maps enhances human object location memory.

    PubMed

    Edler, Dennis; Bestgen, Anne-Kathrin; Kuchinke, Lars; Dickmann, Frank

    2015-01-01

    Cognitive representations of learned map information are subject to systematic distortion errors. Map elements that divide a map surface into regions, such as content-related linear symbols (e.g. streets, rivers, railway systems) or additional artificial layers (coordinate grids), provide an orientation pattern that can help users to reduce distortions in their mental representations. In recent years, the television industry has started to establish True-3D (autostereoscopic) displays as mass media. These modern displays make it possible to watch dynamic and static images including depth illusions without additional devices, such as 3D glasses. In these images, visual details can be distributed over different positions along the depth axis. Some empirical studies of vision research provided first evidence that 3D stereoscopic content attracts higher attention and is processed faster. So far, the impact of True-3D accentuating has not yet been explored concerning spatial memory tasks and cartography. This paper reports the results of two empirical studies that focus on investigations whether True-3D accentuating of artificial, regular overlaying line features (i.e. grids) and content-related, irregular line features (i.e. highways and main streets) in official urban topographic maps (scale 1/10,000) further improves human object location memory performance. The memory performance is measured as both the percentage of correctly recalled object locations (hit rate) and the mean distances of correctly recalled objects (spatial accuracy). It is shown that the True-3D accentuating of grids (depth offset: 5 cm) significantly enhances the spatial accuracy of recalled map object locations, whereas the True-3D emphasis of streets significantly improves the hit rate of recalled map object locations. These results show the potential of True-3D displays for an improvement of the cognitive representation of learned cartographic information.

  17. 3D tomographic reconstruction of the internal velocity field of an immiscible drop in a shear flow

    NASA Astrophysics Data System (ADS)

    Kerdraon, Paul; Dalziel, Stuart B.; Goldstein, Raymond E.; Landel, Julien R.; Peaudecerf, Francois J.

    2015-11-01

    We study experimentally the internal flow of a drop attached to a flat substrate and immersed in an immiscible shear flow. Transport inside the drop can play a crucial role in cleaning applications. Internal advection can enhance the mass transfer across the drop surface, thus increasing the cleaning rate. We used microlitre water-glycerol drops on a hydrophobic substrate. The drops were spherical and did not deform significantly under the shear flow. An oil phase of relative viscosity 0.01 to 1 was flowed over the drop. Typical Reynolds numbers inside the drops were of the order of 0.1 to 10. Using confocal microscopy, we performed 3D tomographic reconstruction of the flow field in the drop. The in-plane velocity field was measured using micro-PIV, and the third velocity component was computed from incompressibility. To our knowledge, this study gives the first experimental measurement of the three-dimensional internal velocity field of a drop in a shear flow. Numerical simulations and theoretical models published in the past 30 years predict a toroidal internal recirculation flow, for which the entire surface flows streamwise. However, our measurements reveal a qualitatively different picture with a two-lobed recirculation, featuring two stagnation points at the surface and a reverse surface flow closer to the substrate. This finding appears to be independent of Reynolds number and viscosity ratio in the ranges studied; we conjecture that the observed flow is due to the effect of surfactants at the drop surface.

  18. The 3-D strain patterns in Turkey using geodetic velocity fields from the RTK-CORS (TR) network

    NASA Astrophysics Data System (ADS)

    Kutoglu, Hakan Senol; Toker, Mustafa; Mekik, Cetin

    2016-03-01

    This study presents our use of GPS data to obtain and quantify the full continuous strain tensor using a 3-D velocity field in Turkey. In this study, GPS velocities improve the estimation of short-term strain tensor fields for determining the seismic hazard of Turkey. The tensorial analysis presents different aspects of deformation, such as the normal and shear strains, including their directions, the compressional and extensional strains. This analysis is appropriate for the characterizing the state of the current seismic deformation. GPS velocity data from continuous measurements (2009-2012) to estimate deformations were processed using the GAMIT/GLOBK software. Using high-rate GPS data from permanent 146 GNSS stations (RTK-CORS-TR network), the strain distribution was determined and interpolated using a biharmonic spline technique. We show the strain field patterns within axial and plane form at several critical locations, and discuss these results within the context of the seismic and tectonic deformation of Turkey. We conclude that the knowledge of the crustal strain patterns provides important information on the location of the main faults and strain accumulation for the hazard assessment. The results show an agreement between the seismic and tectonic strains confirming that there are active crustal deformations in Turkey.

  19. Traverse velocity maps for human exploration

    NASA Astrophysics Data System (ADS)

    Heinicke, Christiane; Johnston, Carmel; Sefton-Nash, Elliot; Foing, Bernard

    2017-04-01

    It is often proposed that humans are more effective and efficient in conducting exploratory work during planetary missions than rovers. However, even humans are hindered by the restrictions of their suits and by necessary precautions to ensure the astronauts' safety. During the 12-month simulation at the Hawaii Space Exploration Analog and Simulation facility, several members of the six-person crew conducted a large number of exploratory expeditions under conditions similar to a Mars crew. Over the course of 145 extra-vehicular activities (EVAs), they traversed several thousand kilometers of various types of terrain. The actual walking speeds of the crew members have been correlated with different properties of the terrain as determined from field excursions and remote sensing. The resulting terrain and velocity maps can be used both for ground truthing of satellite imagery, and potential EVA planning on celestial bodies.

  20. Enabling 3D-Liver Perfusion Mapping from MR-DCE Imaging Using Distributed Computing.

    PubMed

    Leporq, Benjamin; Camarasu-Pop, Sorina; Davila-Serrano, Eduardo E; Pilleul, Frank; Beuf, Olivier

    2013-01-01

    An MR acquisition protocol and a processing method using distributed computing on the European Grid Infrastructure (EGI) to allow 3D liver perfusion parametric mapping after Magnetic Resonance Dynamic Contrast Enhanced (MR-DCE) imaging are presented. Seven patients (one healthy control and six with chronic liver diseases) were prospectively enrolled after liver biopsy. MR-dynamic acquisition was continuously performed in free-breathing during two minutes after simultaneous intravascular contrast agent (MS-325 blood pool agent) injection. Hepatic capillary system was modeled by a 3-parameters one-compartment pharmacokinetic model. The processing step was parallelized and executed on the EGI. It was modeled and implemented as a grid workflow using the Gwendia language and the MOTEUR workflow engine. Results showed good reproducibility in repeated processing on the grid. The results obtained from the grid were well correlated with ROI-based reference method ran locally on a personal computer. The speed-up range was 71 to 242 with an average value of 126. In conclusion, distributed computing applied to perfusion mapping brings significant speed-up to quantification step to be used for further clinical studies in a research context. Accuracy would be improved with higher image SNR accessible on the latest 3T MR systems available today.

  1. Low velocity crustal flow and crust-mantle coupling mechanism in Yunnan, SE Tibet, revealed by 3D S-wave velocity and azimuthal anisotropy

    NASA Astrophysics Data System (ADS)

    Chen, Haopeng; Zhu, Liangbao; Su, Youjin

    2016-08-01

    We used teleseismic data recorded by a permanent seismic network in Yunnan, SE Tibet, and measured the interstation Rayleigh wave phase velocity between 10 and 60 s. A two-step inversion scheme was used to invert for the 3D S-wave velocity and azimuthal anisotropy structure of 10-110 km. The results show that there are two low velocity channels between depths of 20-30 km in Yunnan and that the fast axes are sub-parallel to the strikes of the low velocity channels, which supports the crustal flow model. The azimuthal anisotropy pattern is quite complicated and reveals a complex crust-mantle coupling mechanism in Yunnan. The N-S trending Lüzhijiang Fault separates the Dianzhong Block into two parts. In the western Dianzhong Block, the fast axis of the S-wave changes with depth, which indicates that the crust and the lithospheric mantle are decoupled. In the eastern Dianzhong Block and the western Yangtze Craton, the crust and the lithospheric mantle may be decoupled because of crustal flow, despite a coherent S-wave fast axis at depths of 10-110 km. In addition, the difference between the S-wave fast axis in the lithosphere and the SKS splitting measurement suggests that the lithosphere and the upper mantle are decoupled there. In the Baoshan Block, the stratified anisotropic pattern suggests that the crust and the upper mantle are decoupled.

  2. Velocity Gradient Maps Directly Measured by PLF

    NASA Astrophysics Data System (ADS)

    Quintella, Cristina M.; Gonçalves, Cristiane C.; Lima, Angelo Mv; Pepe, Iuri M.

    2000-11-01

    Flows are macroscopically classified as laminar or turbulent due to their velocity distributions, nevertheless most chemical and biological phenomena are yield or enhanced by intermolecular orientation and microscopic turbulence. Here was studied a 100micra liquid sheet produced by a slit nozzle, both flowing freely into air and over a borosilicate surface (roughness bellow 5nm), ranging from 17 to 36Re (143 to 297cm/s, similar to muscles and brain blood flow). Mono ethylene glycol was used either pure, or with sodium alkyl benzene sulfated (ABS) surfactant (24.5mol/L, submicellar), or with poly(ethylene oxide) (PEO) (1409ppm, 4millions aw). Velocity gradients were directly measured by 514nm polarized laser induced fluorescence (PLF) with R6G as probe. Intermolecular alignment (IA) maps were obtained all over the flow (about 1,950 points, 0.02mm2 precision). The free jet average IA has increased 57% when flowing over borosilicate. With ABS, the IA increased, suggesting wall drag reduction. With PEO the IA decreases due to solvent intermolecular forces attenuation, generating wider turbulent areas. PLF proved to be an excellent method to evaluate IA within liquid thin flows. Chosen solute additions permits IA control over wide regions.

  3. Homogenization and implementation of a 3D regional velocity model in Mexico for its application in moment tensor inversion of intermediate-magnitude earthquakes

    NASA Astrophysics Data System (ADS)

    Rodríguez Cardozo, Félix; Hjörleifsdóttir, Vala; Caló, Marco

    2017-04-01

    Moment tensor inversions for intermediate and small earthquakes (M. < 4.5) are challenging as they principally excite relatively short period seismic waves that interact strongly with local heterogeneities. Incorporating detailed regional 3D velocity models permits obtaining realistic synthetic seismograms and recover the seismic source parameters these smaller events. Two 3D regional velocity models have recently been developed for Mexico, using surface waves and seismic noise tomography (Spica et al., 2016; Gaite et al., 2015), which could be used to model the waveforms of intermediate magnitud earthquakes in this region. Such models are parameterized as layered velocity profiles and for some of the profiles, the velocity difference between two layers are considerable. The "jump" in velocities between two layers is inconvenient for some methods and algorithms that calculate synthetic waveforms, in particular for the method that we are using, the spectral element method (SPECFEM3D GLOBE, Komatitsch y Tromp, 2000), when the mesh does not follow the layer boundaries. In order to make the velocity models more easily implementec in SPECFEM3D GLOBE it is neccesary to apply a homogenization algorithm (Capdeville et al., 2015) such that the (now anisotropic) layer velocities are smoothly varying with depth. In this work, we apply a homogenization algorithm to the regional velocity models in México for implementing them in SPECFEM3D GLOBE, calculate synthetic waveforms for intermediate-magnitude earthquakes in México and invert them for the seismic moment tensor.

  4. A compact single-camera system for high-speed, simultaneous 3-D velocity and temperature measurements.

    SciTech Connect

    Lu, Louise; Sick, Volker; Frank, Jonathan H.

    2013-09-01

    The University of Michigan and Sandia National Laboratories collaborated on the initial development of a compact single-camera approach for simultaneously measuring 3-D gasphase velocity and temperature fields at high frame rates. A compact diagnostic tool is desired to enable investigations of flows with limited optical access, such as near-wall flows in an internal combustion engine. These in-cylinder flows play a crucial role in improving engine performance. Thermographic phosphors were proposed as flow and temperature tracers to extend the capabilities of a novel, compact 3D velocimetry diagnostic to include high-speed thermometry. Ratiometric measurements were performed using two spectral bands of laser-induced phosphorescence emission from BaMg2Al10O17:Eu (BAM) phosphors in a heated air flow to determine the optimal optical configuration for accurate temperature measurements. The originally planned multi-year research project ended prematurely after the first year due to the Sandia-sponsored student leaving the research group at the University of Michigan.

  5. Exploration criteria for mineral target mapping based on 3D geological modeling in the Taebaek mineralized belt in Korea

    NASA Astrophysics Data System (ADS)

    Oh, H. J.; Kihm, Y. H.; Cho, S. J.

    2015-12-01

    We constructed a three-dimensional (3D) geological model based on a 1:50,000-scaled geologic map and determined the exploration criteria for skarn deposit target mapping in the Taebaek mineralized belt. All available geological and geophysical data were compiled in a 3D computing environment using GOCAD software. Twenty-four stratigraphic horizons and more than 100 fault surfaces are defined in the 3D geological model. The primary geological criteria for skarn mineralization in the Taebaek mineralized belt included the presence of an NE-oriented strike-slip fault, key stratigraphic horizons, and a high magnetic susceptibility anomaly based on 3D inversion of magnetic data. The 3D geological criteria were extracted from the 3D geological model for skarn deposit target mapping in the belt. The distance values of the three criteria (NE strike-slip fault, limestone horizon, and area of high magnetic susceptibility) were divided into four classes based on cutoff values determined by experts. The weight values for all of the geological criteria and the score value for each class of the distance criteria were also estimated based on expert knowledge. The weights and scores of geological criteria derived from expert knowledge serve as useful guides for target mapping in the Taebaek mineralized belt.

  6. Developed Design for Humeral Head Replacement Using 3D Surface Mapping

    NASA Astrophysics Data System (ADS)

    Salah, H. R.

    2014-12-01

    Assessment of dimensional and geometrical data on the humeral head replacement (HHR) objects is essential for solving the relevant designing problems in the physics of reverse engineering (RE). In this work, 2D-assessment for human humerus was performed using the computed tomography (CT) technique within the RE plan, after which the 2D images of humeral objects were converted into 3D images. The conversion was successful and indicated a clear difference in the 2D and 3D estimates of sizes and geometry of the humerus. The authors have analyzed and confirmed experimentally the statistical information on the relevant anatomical objects. The results of finite-element simulation of the compressive stresses affecting the geometry of 3D surface mapping were analyzed using SolidWorks software. For developing the biomechanical design of an HHR object suitable biomaterials were selected, and different metal-based biomaterials are discussed as applied at various loads. New methodology is presented for the size estimation of humeral head - both anatomical and artificial - in 3D-shape. A detailed interpretation is given for the results of CT D-measurements. Izmēru un ģeometrisko datu novērtējums, kas attiecas uz pleca kaula galviņas nomaiņas (PKGN) objektiem, nepieciešams, lai risinātu virkni reversīvās inženierijas (RI) problēmu. Šajā darbā cilvēka pleca kaula galviņas divdimensiju novērtējums tika veikts ar datortomogrāfijas palīdzību (RI) ietvaros, un pēc tam objekta divdimensiju attēlojums tika pārveidots trīsdimensiju. Pārveidojums bija sekmīgs, parādot pleca kaula galviņas izmēru un ģeometrijas atšķirības starp 2D un 3D novērtējumiem. Autori izanalizēja un eksperimentāli apstiprināja statistisko informāciju pēc dotā veida anatomiskiem objektiem. Saspiešanas sasprindzinājumi, kuri ietekmē trīsdimensiju virsmas attēlojuma ģeometriju, tika analizēti ar gala-elementu simulācijas metodi, lietojot programmu Solid

  7. Rupture complexity of the M6.0 Amatrice Earthquake probed by 1D and 3D velocity models

    NASA Astrophysics Data System (ADS)

    Tinti, E.; Scognamiglio, L.; Casarotti, E.; Magnoni, F.; Quintiliani, M.; Michelini, A.; Cocco, M.

    2016-12-01

    On 24th August 2016 a ML 6.0 earthquake occurred in the Central Apennines (Italy) between Amatrice and Norcia causing heavy damages and nearly 300 fatalities. The main shock and most of the aftershocks show NNW-SSE striking focal mechanisms in agreement with the current NE-SW extensional tectonic setting of Central Apennines. To image the rupture history of the Amatrice earthquake, we invert the ground velocity time histories obtained from 26 three components strong motion accelerometers located within 45 km from the fault, filtered between 0.02 and 0.5 Hz. The inferred slip distribution is heterogeneous and characterized by two shallow slip patches located up-dip and NW from the hypocenter. The rupture history shows a bilateral propagation and a relatively high rupture velocity (3.1 km/s), producing evident directivity effects both N-NW and SE of the hypocenter and characterizing the recorded near-source peak ground motions. The retrieved rupture model provides a good fit to observed ground velocities up to 1 Hz, corroborating the contribution of rupture directivity and slip heterogeneity to ground shaking and damage pattern. We highlight that fault dimensions and peak slip values are relatively large for a moderate-magnitude earthquake. Finally, we have performed a forward modeling of seismic wave propagation in a 3D crustal model, using the imaged rupture history as the source model, to verify the effects of topography and velocity model on the calculated ground motions, and interpret the inferred source heterogeneity.

  8. Solar Wind Heating as Revealed from the Variation of 3D Ion Velocity Distributions across the Magnetic Reconnection Exhaust Region

    NASA Astrophysics Data System (ADS)

    He, J.

    2015-12-01

    Magnetic reconnection within current sheet has been regarded as one of the crucial dissipation and heating processes of coherent structures in the solar wind turbulence. Counter-streaming of ions is an important phenomenon in the reconnection exhaust region ranged from the ion diffusion region to the extended outflow region. It has been suggested by theoretical and numerical models that the ions are going to be picked up by the ejecting magnetic field and show larger T_perpendicular than T_parallel, if the guide field is strong enough (in other word, the shear angle is relatively low). The pick-up behavior seems to favor the heating of heavy ions with high mass-to-charge ratio, since the high M/Q ions have larger gyro-period/transit-time and tend to be non-adiabatic more easily. The above statements from theoretical models have not been thoroughly testified in the solar wind observations, though the changes in total temperature and 1D reduced velocity distribution function had been studied. Until now, it remains unclear about the difference of full 3D velocity distribution for the proton and helium ions between the upstream and the exhaust regions. Here, we will analyze the plasma measurement data from WIND/3DP to explore and compare the parallel and perpendicular heating effect of different species of ions. As a preliminary result, the proton is found to show bi-directional streams in its velocity distribution in some reconnection exhaust regions. The thermalization of the counter-streaming protons will be presented. The relation between proton T_parallel/T_perpendicular and guide field strength (or shear angle) will be studied. The velocity distributions of helium ions will be illustrated, which shows the difference of heating effect between different M/Q ratios.

  9. 3-D P- and S-wave velocity structure along the central Alpine Fault, South Island, New Zealand

    NASA Astrophysics Data System (ADS)

    Guo, B.; Thurber, C. H.; Roecker, S. W.; Townend, J.; Rawles, C.; Chamberlain, C. J.; Boese, C. M.; Bannister, S.; Feenstra, J.; Eccles, J. D.

    2017-05-01

    The Deep Fault Drilling Project (DFDP) on the central Alpine Fault, South Island, New Zealand, has motivated a broad range of geophysical and geological studies intended to characterize the fault system in the locality of the drill site at various scales. In order to better understand the structural features of the central Alpine Fault, we have developed 3-D P- and S-wave velocity (VP and VS) models of the region by double-difference tomography using data sets from multiple seismic networks. In previous work, the quality of the S-wave model has been poor due to the small number of available S-wave picks. We have utilized a new high-accuracy automatic S-wave picker to increase the number of usable S-wave arrivals by more than a factor of two, thereby substantially improving the VS model. Compared to previous studies, our new higher-resolution VP model based on more observations shows a clear VP contrast (higher VP on the southeast hanging wall side) at depths of 5-10 km near the DFDP drill sites. With our better resolved VS model, in the same region, we detect a sharply defined high VS body (VS > 3.7 km s-1) within the hanging wall. Our earthquake relocations reveal the presence of clusters within and around low-velocity zones in the hanging wall southeast of the Alpine Fault. Together with the improved earthquake locations, the P- and S-wave tomography results reveal the Alpine Fault to be marked by a velocity contrast throughout most of the study region. The fault dips southeastwards at about 50° from 5 to 15 km depth, as inferred from the velocity structure, seismicity and observations of fault zone guided waves.

  10. Calculation of the nuclear material inventory in a sealed vault by 3D radiation mapping

    SciTech Connect

    Adsley, Ian; Klepikov, Alexander; Tur, Yevgeniy; Wells, David

    2013-07-01

    The paper relates to the determination of the amount of nuclear material contained in a closed, concrete lined vault at the Aktau fast breeder reactor in Kazakhstan. This material had been disposed into the vault after examination in an experimental hot cell directly above the vault. In order to comply with IAEA Safeguards requirements it was necessary to determine the total quantities of nuclear materials - enriched uranium and plutonium - that were held with Kazakhstan. Although it was possible to determine the inventory of all of the accessible nuclear material - the quantity remaining in the vault was unknown. As part of the Global Threat Reduction Programme the UK Government funded a project to determine the inventory of these nuclear materials in this vault. This involved drilling three penetrations through the concrete lined roof of the vault; this enabled the placement of lights and a camera into the vault through two penetrations; while the third penetration enabled a lightweight manipulator arm to be introduced into the vault. This was used to provide a detailed 3D mapping of the dose rate within the vault and it also enabled the collection of samples for radionuclide analysis. The deconvolution of the 3D dose rate profile within the vault enabled the determination of the gamma emitting source distribution on the floor and walls of the vault. The samples were analysed to determine the fingerprint of those radionuclides producing the gamma dose - namely {sup 137}Cs and {sup 60}Co - to the nuclear materials. The combination of the dose rate source terms on the surfaces of the vault and the fingerprint then enabled the quantities of nuclear materials to be determined. The project was a major success and enabled the Kazakhstan Government to comply with IAEA Safeguards requirements. It also enabled the UK DECC Ministry to develop a technology of national (and international) use. Finally the technology was well received by IAEA Safeguards as an acceptable

  11. 3D mapping of airway wall thickening in asthma with MSCT: a level set approach

    NASA Astrophysics Data System (ADS)

    Fetita, Catalin; Brillet, Pierre-Yves; Hartley, Ruth; Grenier, Philippe A.; Brightling, Christopher

    2014-03-01

    Assessing the airway wall thickness in multi slice computed tomography (MSCT) as image marker for airway disease phenotyping such asthma and COPD is a current trend and challenge for the scientific community working in lung imaging. This paper addresses the same problem from a different point of view: considering the expected wall thickness-to-lumen-radius ratio for a normal subject as known and constant throughout the whole airway tree, the aim is to build up a 3D map of airway wall regions of larger thickness and to define an overall score able to highlight a pathological status. In this respect, the local dimension (caliber) of the previously segmented airway lumen is obtained on each point by exploiting the granulometry morphological operator. A level set function is defined based on this caliber information and on the expected wall thickness ratio, which allows obtaining a good estimate of the airway wall throughout all segmented lumen generations. Next, the vascular (or mediastinal dense tissue) contact regions are automatically detected and excluded from analysis. For the remaining airway wall border points, the real wall thickness is estimated based on the tissue density analysis in the airway radial direction; thick wall points are highlighted on a 3D representation of the airways and several quantification scores are defined. The proposed approach is fully automatic and was evaluated (proof of concept) on a patient selection coming from different databases including mild, severe asthmatics and normal cases. This preliminary evaluation confirms the discriminative power of the proposed approach regarding different phenotypes and is currently extending to larger cohorts.

  12. Improving the process of geological mapping in sedimentary terrain by using high-resolution topography in 3D environments

    NASA Astrophysics Data System (ADS)

    Chan, Yu-Chang; Shih, Nai-Cih; Chiu, Chia-Hung; Hsieh, Yu-Chung

    2017-04-01

    Traditional geologic maps were basically produced by field geologists through direct field investigations and interpretations from 2D topographic maps. However, the quality of traditional geologic maps was knowingly compromised by field conditions, particularly, when the mapping area is largely inaccessible or covered by heavy forest canopies. Recent advancement in airborne LiDAR technology can virtually remove trees or buildings, thus, providing a useful high-resolution topographic data set for the bare ground surface. The high-resolution topography still needs to be interpreted in terms of geology, and fundamental questions regarding how to apply the high-resolution topography remain to be answered for improving the process and quality of geological mapping. In this study, we aim to test the quality and reliability of high-resolution geologic maps produced by recently developed methods by an example from the fold-and-thrust belt in northern Taiwan. We performed the geological mapping by applying the LiDAR-derived DEM, self-developed Python program tools and many layers of relevant information at interactive 3D environments on a computer. Our mapping results indicate that the proposed mapping methods will significantly raise the quality and consistency of the geologic maps. Our study also shows that in order to gain consistent mapping results, future high-resolution geologic maps should be produced in 3D environments based on existing geologic maps and a few field checks for verification.

  13. Hot deformation characterization of duplex low-density steel through 3D processing map development

    SciTech Connect

    Mohamadizadeh, A.; Zarei-Hanzaki, A.; Abedi, H.R.; Mehtonen, S.; Porter, D.

    2015-09-15

    The high temperature deformation behavior of duplex low-density Fe–18Mn–8Al–0.8C steel was investigated at temperatures in the range of 600–1000 °C. The primary constitutive analysis indicated that the Zener–Hollomon parameter, which represents the coupled effects of temperature and strain rate, significantly varies with the amount of deformation. Accordingly, the 3D processing maps were developed considering the effect of strain and were used to determine the safe and unsafe deformation conditions in association with the microstructural evolution. The deformation at efficiency domain I (900–1100 °C\\10{sup −} {sup 2}–10{sup −} {sup 3} s{sup −} {sup 1}) was found to be safe at different strains due to the occurrence of dynamic recrystallization in austenite. The safe efficiency domain II (700–900 °C\\1–10{sup −} {sup 1} s{sup −} {sup 1}), which appeared at logarithmic strain of 0.4, was characterized by deformation induced ferrite formation. Scanning electron microscopy revealed that the microband formation and crack initiation at ferrite\\austenite interphases were the main causes of deformation instability at 600–800 °C\\10{sup −} {sup 2}–10{sup −} {sup 3} s{sup −} {sup 1}. The degree of instability was found to decrease by increasing the strain due to the uniformity of microbanded structure obtained at higher strains. The shear band formation at 900–1100 °C\\1–10{sup −} {sup 1} s{sup −} {sup 1} was verified by electron backscattered diffraction. The local dynamic recrystallization of austenite and the deformation induced ferrite formation were observed within shear-banded regions as the results of flow localization. - Graphical abstract: Display Omitted - Highlights: • The 3D processing map is developed for duplex low-density Fe–Mn–Al–C steel. • The efficiency domains shrink, expand or appear with increasing strain. • The occurrence of DRX and DIFF increases the power efficiency. • Crack initiation

  14. High-resolution seismic mapping at a groundwater contamination site: 3-D traveltime tomography of refraction data

    NASA Astrophysics Data System (ADS)

    Azaria, A.; Zelt, C.; Levander, A.

    2003-04-01

    As part of an ongoing environmental characterization project at Hill Air Force Base near Ogden, Utah, a 3-D seismic survey led by a team from Rice University was performed over a contaminated aquifer in 2000. This site contains significant amounts of dense non-aqueous phase liquids (DNAPLs) in a shallow aquifer less than ~15 m deep. The aquifer is bounded below by a clay aquiclude, in which a paleochannel acts as a trap for the contaminants. The overburden consists of Quaternary sands, gravels and clays. Imaging the structure of the paleochannel at depths up to 15 m is the main target of the survey. The four week experiment included 3-D reflection, 3-D refraction, checkshot surveys and vertical seismic profiles using wells up to 15m deep. Here we present traveltime tomography results from the 3-D refraction survey which consisted of 596 RefTek Texan recorders deployed uniformly in a stationary rectangular grid over an area of 95m by 36m. A shot from a .223 caliber rifle was fired 30cm from each receiver station, yielding a dataset with about 360,000 traces. The arrival times of the refracted waves were used in a 3-D tomographic inversion to image the seismic velocity structure of the study area. The iterative, nonlinear tomographic approach employs regularization to smooth the model perturbations with respect to a simple 1-D starting/reference model. The resulting velocity model shows that the near-surface velocity increases by roughly a factor of 5 in the upper 15m, from about 300m/s to 1500m/s. Cross-sections through the model show a north-south trending low-velocity feature interpreted to be the channel structure. The low-velocity feature is best viewed via depth slices which define an anomaly that roughly outlines the geometry of the buried paleo-channel based on well data. A comparison between the 3-D velocity model and time slices through a brute stack of the 3-D reflection data also show close agreement (see Dana et al. this session). Checkerboard tests

  15. Seismicity patterns along the Ecuadorian subduction zone: new constraints from earthquake location in a 3-D a priori velocity model

    NASA Astrophysics Data System (ADS)

    Font, Yvonne; Segovia, Monica; Vaca, Sandro; Theunissen, Thomas

    2013-04-01

    To improve earthquake location, we create a 3-D a priori P-wave velocity model (3-DVM) that approximates the large velocity variations of the Ecuadorian subduction system. The 3-DVM is constructed from the integration of geophysical and geological data that depend on the structural geometry and velocity properties of the crust and the upper mantle. In addition, specific station selection is carried out to compensate for the high station density on the Andean Chain. 3-D synthetic experiments are then designed to evaluate the network capacity to recover the event position using only P arrivals and the MAXI technique. Three synthetic earthquake location experiments are proposed: (1) noise-free and (2) noisy arrivals used in the 3-DVM, and (3) noise-free arrivals used in a 1-DVM. Synthetic results indicate that, under the best conditions (exact arrival data set and 3-DVM), the spatiotemporal configuration of the Ecuadorian network can accurately locate 70 per cent of events in the frontal part of the subduction zone (average azimuthal gap is 289° ± 44°). Noisy P arrivals (up to ± 0.3 s) can accurately located 50 per cent of earthquakes. Processing earthquake location within a 1-DVM almost never allows accurate hypocentre position for offshore earthquakes (15 per cent), which highlights the role of using a 3-DVM in subduction zone. For the application to real data, the seismicity distribution from the 3-D-MAXI catalogue is also compared to the determinations obtained in a 1-D-layered VM. In addition to good-quality location uncertainties, the clustering and the depth distribution confirm the 3-D-MAXI catalogue reliability. The pattern of the seismicity distribution (a 13 yr record during the inter-seismic period of the seismic cycle) is compared to the pattern of rupture zone and asperity of the Mw = 7.9 1942 and the Mw = 7.7 1958 events (the Mw = 8.8 1906 asperity patch is not defined). We observe that the nucleation of 1942, 1958 and 1906 events coincides with

  16. Hypocenter relocation using a fast grid search method and a 3-D seismic velocity model for the Sumatra region

    SciTech Connect

    Nugroho, Hendro; Widiyantoro, Sri; Nugraha, Andri Dian

    2013-09-09

    Determination of earthquake hypocenter in Indonesia conducted by the Meteorological, Climatological, and Geophysical Agency (MCGA) has still used a 1-D seismic velocity model. In this research, we have applied a Fast Grid Search (FGM) method and a 3-D velocity model resulting from tomographic imaging to relocate earthquakes in the Sumatran region. The data were taken from the MCGA data catalog from 2009 to 2011 comprising of subduction zone and on land fault earthquakes with magnitude greater than 4 Mw. Our preliminary results show some significant changes in the depths of the relocated earthquakes which are in general deeper than the depths of hypocenters from the MCGA data catalog. The residual times resulting from the relocation process are smaller than those prior to the relocation. Encouraged by these results, we will continue to conduct hypocenter relocation for all events from the MCGA data catalog periodically in order to produce a new data catalog with good quality. We hope that the new data catalog will be useful for further studies.

  17. 3-D P- and S-wave velocity structure and low-frequency earthquake locations in the Parkfield, California region

    USGS Publications Warehouse

    Zeng, Xiangfang; Thurber, Clifford H.; Shelly, David R.; Harrington, Rebecca M.; Cochran, Elizabeth S.; Bennington, Ninfa L.; Peterson, Dana; Guo, Bin; McClement, Kara

    2016-01-01

    To refine the 3-D seismic velocity model in the greater Parkfield, California region, a new data set including regular earthquakes, shots, quarry blasts and low-frequency earthquakes (LFEs) was assembled. Hundreds of traces of each LFE family at two temporary arrays were stacked with time–frequency domain phase weighted stacking method to improve signal-to-noise ratio. We extend our model resolution to lower crustal depth with LFE data. Our result images not only previously identified features but also low velocity zones (LVZs) in the area around the LFEs and the lower crust beneath the southern Rinconada Fault. The former LVZ is consistent with high fluid pressure that can account for several aspects of LFE behaviour. The latter LVZ is consistent with a high conductivity zone in magnetotelluric studies. A new Vs model was developed with S picks that were obtained with a new autopicker. At shallow depth, the low Vs areas underlie the strongest shaking areas in the 2004 Parkfield earthquake. We relocate LFE families and analyse the location uncertainties with the NonLinLoc and tomoDD codes. The two methods yield similar results.

  18. 3-D P- and S-wave velocity structure and low-frequency earthquake locations in the Parkfield, California region

    NASA Astrophysics Data System (ADS)

    Zeng, Xiangfang; Thurber, Clifford H.; Shelly, David R.; Harrington, Rebecca M.; Cochran, Elizabeth S.; Bennington, Ninfa L.; Peterson, Dana; Guo, Bin; McClement, Kara

    2016-09-01

    To refine the 3-D seismic velocity model in the greater Parkfield, California region, a new data set including regular earthquakes, shots, quarry blasts and low-frequency earthquakes (LFEs) was assembled. Hundreds of traces of each LFE family at two temporary arrays were stacked with time-frequency domain phase weighted stacking method to improve signal-to-noise ratio. We extend our model resolution to lower crustal depth with LFE data. Our result images not only previously identified features but also low velocity zones (LVZs) in the area around the LFEs and the lower crust beneath the southern Rinconada Fault. The former LVZ is consistent with high fluid pressure that can account for several aspects of LFE behaviour. The latter LVZ is consistent with a high conductivity zone in magnetotelluric studies. A new Vs model was developed with S picks that were obtained with a new autopicker. At shallow depth, the low Vs areas underlie the strongest shaking areas in the 2004 Parkfield earthquake. We relocate LFE families and analyse the location uncertainties with the NonLinLoc and tomoDD codes. The two methods yield similar results.

  19. Zemmouri earthquake rupture zone (Mw 6.8, Algeria): Aftershocks sequence relocation and 3D velocity model

    NASA Astrophysics Data System (ADS)

    Ayadi, A.; Dorbath, C.; Ousadou, F.; Maouche, S.; Chikh, M.; Bounif, M. A.; Meghraoui, M.

    2008-09-01

    We analyze the aftershocks sequence of the Zemmouri thrust faulting earthquake (21 May 2003, Mw 6.8) located east of Algiers in the Tell Atlas. The seismic sequence located during ˜2 months following the mainshock is made of more than 1500 earthquakes and extends NE-SW along a ˜60-km fault rupture zone crossing the coastline. The earthquake relocation was performed using handpicked P and S phases located with the tomoDD in a detailed 3D velocity structure of the epicentral area. Contrasts between velocity patches seem to correlate with contacts between granitic-volcanic basement rocks and the sedimentary formation of the eastern Mitidja basin. The aftershock sequence exhibits at least three seismic clouds and a well-defined SE-dipping main fault geometry that reflects the complex rupture. The distribution of seismic events presents a clear contrast between a dense SW zone and a NE zone with scattered aftershocks. We observe that the mainshock locates between the SW and NE seismic zones; it also lies at the NNS-SSE contact that separates a basement block to the east and sedimentary formations to the west. The aftershock distribution also suggests fault bifurcation at the SW end of the fault rupture, with a 20-km-long ˜N 100° trending seismic cluster, with a vertical fault geometry parallel to the coastline juxtaposed. Another aftershock cloud may correspond to 75° SE dipping fault. The fault geometry and related SW branches may illustrate the interference between pre-existing fault structures and the SW rupture propagation. The rupture zone, related kinematics, and velocity contrasts obtained from the aftershocks distribution are in agreement with the coastal uplift and reflect the characteristics of an active zone controlled by convergent movements at a plate boundary.

  20. Inferring functional constraints and divergence in protein families using 3D mapping of phylogenetic information

    PubMed Central

    Blouin, Christian; Boucher, Yan; Roger, Andrew J.

    2003-01-01

    Comparative sequence analysis has been used to study specific questions about the structure and function of proteins for many years. Here we propose a knowledge-based framework in which the maximum likelihood rate of evolution is used to quantify the level of constraint on the identity of a site. We demonstrate that site-rate mapping on 3D structures using datasets of rhodopsin-like G-protein receptors and α- and β-tubulins provides an excellent tool for pinpointing the functional features shared between orthologous and paralogous proteins. In addition, functional divergence within protein families can be inferred by examining the differences in the site rates, the differences in the chemical properties of the side chains or amino acid usage between aligned sites. Two novel analytical methods are introduced to characterize rate- independent functional divergence. These are tested using a dataset of two classes of HMG-CoA reductases for which only one class can perform both the forward and reverse reaction. We show that functionally divergent sites occur in a cluster of sites interacting with the catalytic residues and that this information should facilitate the design of experimental strategies to directly test functional properties of residues. PMID:12527789

  1. Inferring functional constraints and divergence in protein families using 3D mapping of phylogenetic information.

    PubMed

    Blouin, Christian; Boucher, Yan; Roger, Andrew J

    2003-01-15

    Comparative sequence analysis has been used to study specific questions about the structure and function of proteins for many years. Here we propose a knowledge-based framework in which the maximum likelihood rate of evolution is used to quantify the level of constraint on the identity of a site. We demonstrate that site-rate mapping on 3D structures using datasets of rhodopsin-like G-protein receptors and alpha- and beta-tubulins provides an excellent tool for pinpointing the functional features shared between orthologous and paralogous proteins. In addition, functional divergence within protein families can be inferred by examining the differences in the site rates, the differences in the chemical properties of the side chains or amino acid usage between aligned sites. Two novel analytical methods are introduced to characterize rate- independent functional divergence. These are tested using a dataset of two classes of HMG-CoA reductases for which only one class can perform both the forward and reverse reaction. We show that functionally divergent sites occur in a cluster of sites interacting with the catalytic residues and that this information should facilitate the design of experimental strategies to directly test functional properties of residues.

  2. 3-D pain drawings and seating pressure maps: relationships and challenges.

    PubMed

    Spyridonis, Fotios; Ghinea, Gheorghita

    2011-05-01

    Mobility impaired people constitute a significant portion of the adult population, which often experience back pain at some point during their lifetime. Such pain is usually characterized by severe implications reflected on both their personal lives, as well as on a country's health and economic systems. The traditional 2-D representations of the human body often used can be limited in their ability to efficiently visualize such pain for diagnosis purposes. Yet, patients have been shown to prefer such drawings. However, considering that pain is a feeling or emotion that is subjective in nature, the pain drawings could be consequently regarded as a subjective means of communicating such pain. As a result, the study described in this paper proposes an alternative, which encompasses a 3-D pain visualization solution, developed in a previous work of ours. This alternative is complemented with the upcoming technique of pressure mapping for more objectivity in the pain data collection. The results of this study have shown that the proposed approach is a promising solution for the purpose intended, and it could generally prove to be a significant complementary method in the area of medical practice for the mobility impaired community.

  3. Studying nanoparticles' 3D shape by aspect maps: Determination of the morphology of bacterial magnetic nanoparticles.

    PubMed

    Peddis, D; Muscas, G; Mathieu, R; Kumar, P Anil; Varvaro, G; Singh, G; Orue, I; Gil-Carton, D; Marcano, L; Muela, A; Fdez-Gubieda, M L

    2016-10-06

    Magnetic nanoparticles (MNPs) are widely investigated due to their potential use in various applications, ranging from electronics to biomedical devices. The magnetic properties of MNPs are strongly dependent on their size and shape (i.e., morphology), thus appropriate tools to investigate their morphology are fundamental to understand the physics of these systems. Recently a new approach to study nanoparticle morphology by Transmission Electron Microscopy (TEM) analysis has been proposed, introducing the so-called Aspect Maps (AMs). In this paper, a further evolution of the AM method is presented, allowing determination of the nanoparticles' 3D shape by TEM image. As a case study, this paper will focus on magnetite nanoparticles (Fe3O4), with a mean size of ∼45 nm extracted from Magnetospirillum gryphiswaldense magnetostatic bacteria (MTB). The proposed approach gives a complete description of the nanoparticles' morphology, allowing estimation of an average geometrical size and shape. In addition, preliminary investigation of the magnetic properties of MTB nanoparticles was performed, giving some insight into interparticle interactions and on the reversal mechanism of the magnetization.

  4. New non-Doppler remote sensing technique for 3D wind field mapping

    NASA Astrophysics Data System (ADS)

    Belen'kii, Mikhail S.; Gimmestad, Gary G.; Gurvich, Alexander V.

    1994-06-01

    A new approach to the statistical analysis of fluctuating, photon-limited signals that permits us to accumulate and process the lidar returns without averaging of the reflected energy fluctuations is developed. This approach requires recording the photocounts for each pulse in a series of pulses and then determining photocount statistics. Based on the semiclassical theory of photodetection and Mandel's formula, a relationship has been obtained between the time-space cross correlation function and the cross spectrum of the lidar returns and corresponding photocount statistics. It is shown that the relative uncertainties of measuring the cross correlation or the cross spectrum of the lidar returns is determined by the general number of photocounts, but not by their mean value. A fast-scanning lidar system, which is based on a new photocounting analysis approach, is described for 3D wind field mapping in the atmosphere at altitudes up to 5 km. A program for the experimental verification of the new approach is presented.

  5. 3-D modeling useful tool for planning. [mapping groundwater and soil pollution and subsurface features

    SciTech Connect

    Calmbacher, C.W. )

    1992-12-01

    Visualizing and delineating subsurface geological features, groundwater contaminant plumes, soil contamination, geological faults, shears and other features can prove invaluable to environmental consultants, engineers, geologists and hydrogeologists. Three-dimensional modeling is useful for a variety of applications from planning remediation to site planning design. The problem often is figuring out how to convert drilling logs, map lists or contaminant levels from soil and groundwater into a 3-D model. Three-dimensional subsurface modeling is not a new requirement, but a flexible, easily applied method of developing such models has not always been readily available. LYNX Geosystems Inc. has developed the Geoscience Modeling System (GMS) in answer to the needs of those regularly having to do three-dimensional geostatistical modeling. The GMS program has been designed to allow analysis, interpretation and visualization of complex geological features and soil and groundwater contamination. This is a powerful program driven by a 30 volume modeling technology engine. Data can be entered, stored, manipulated and analyzed in ways that will present very few limitations to the user. The program has selections for Geoscience Data Management, Geoscience Data Analysis, Geological Modeling (interpretation and analysis), Geostatistical Modeling and an optional engineering component.

  6. Euro-Maps 3D- A Transnational, High-Resolution Digital Surface Model For Europe

    NASA Astrophysics Data System (ADS)

    Uttenthaler, A.; Barner, F.; Hass, T.; Makiola, J.; d'Angelo, P.; Reinartz, P.; Carl, S.; Steiner, K.

    2013-12-01

    Euro-Maps 3D is a homogeneous 5 m spaced digital surface model (DSM) semi-automatically derived by Euromap from 2.5 m in-flight stereo data provided by the Indian IRS-P5 Cartosat-1 satellite. This new and innovative product has been developed in close co- operation with the Remote Sensing Technology Institute (IMF) of the German Aerospace Center (DLR) and is being jointly exploited. The very detailed and accurate representation of the surface is achieved by using a sophisticated and well adapted algorithm implemented on the basis of the Semi-Global Matching approach. In addition, the final product includes detailed flanking information consisting of several pixel-based quality and traceability layers also including an ortho layer. The product is believed to provide maximum accuracy and transparency. The DSM product meets and exceeds HRE80 qualification standards. The DSM product will be made available transnational in a homogeneous quality for most parts of Europe, North Africa and Turkey by Euromap step-by-step. Other areas around the world are processed on demand.

  7. An efficient depth map preprocessing method based on structure-aided domain transform smoothing for 3D view generation

    PubMed Central

    Ma, Liyan; Qiu, Bo; Cui, Mingyue; Ding, Jianwei

    2017-01-01

    Depth image-based rendering (DIBR), which is used to render virtual views with a color image and the corresponding depth map, is one of the key techniques in the 2D to 3D conversion process. Due to the absence of knowledge about the 3D structure of a scene and its corresponding texture, DIBR in the 2D to 3D conversion process, inevitably leads to holes in the resulting 3D image as a result of newly-exposed areas. In this paper, we proposed a structure-aided depth map preprocessing framework in the transformed domain, which is inspired by recently proposed domain transform for its low complexity and high efficiency. Firstly, our framework integrates hybrid constraints including scene structure, edge consistency and visual saliency information in the transformed domain to improve the performance of depth map preprocess in an implicit way. Then, adaptive smooth localization is cooperated and realized in the proposed framework to further reduce over-smoothness and enhance optimization in the non-hole regions. Different from the other similar methods, the proposed method can simultaneously achieve the effects of hole filling, edge correction and local smoothing for typical depth maps in a united framework. Thanks to these advantages, it can yield visually satisfactory results with less computational complexity for high quality 2D to 3D conversion. Numerical experimental results demonstrate the excellent performances of the proposed method. PMID:28407027

  8. An efficient depth map preprocessing method based on structure-aided domain transform smoothing for 3D view generation.

    PubMed

    Liu, Wei; Ma, Liyan; Qiu, Bo; Cui, Mingyue; Ding, Jianwei

    2017-01-01

    Depth image-based rendering (DIBR), which is used to render virtual views with a color image and the corresponding depth map, is one of the key techniques in the 2D to 3D conversion process. Due to the absence of knowledge about the 3D structure of a scene and its corresponding texture, DIBR in the 2D to 3D conversion process, inevitably leads to holes in the resulting 3D image as a result of newly-exposed areas. In this paper, we proposed a structure-aided depth map preprocessing framework in the transformed domain, which is inspired by recently proposed domain transform for its low complexity and high efficiency. Firstly, our framework integrates hybrid constraints including scene structure, edge consistency and visual saliency information in the transformed domain to improve the performance of depth map preprocess in an implicit way. Then, adaptive smooth localization is cooperated and realized in the proposed framework to further reduce over-smoothness and enhance optimization in the non-hole regions. Different from the other similar methods, the proposed method can simultaneously achieve the effects of hole filling, edge correction and local smoothing for typical depth maps in a united framework. Thanks to these advantages, it can yield visually satisfactory results with less computational complexity for high quality 2D to 3D conversion. Numerical experimental results demonstrate the excellent performances of the proposed method.

  9. 3D mapping of buried rocks by the GPR WISDOM/ExoMars 2020

    NASA Astrophysics Data System (ADS)

    Herve, Yann; Ciarletti, Valerie; Le Gall, Alice; Quantin, Cathy; Guiffaut, Christophe; Plettemeier, Dirk

    2017-04-01

    for the ExoMars mission. Our ultimate goal is to show that WISDOM observations can be used to build a 3D map of the subsurface. We will also present experimental data obtained with a prototype of WISDOM to test our method.

  10. 3D multi-scale velocity structure of an active seismogenic normal fault zone (Central Apennines, Italy)

    NASA Astrophysics Data System (ADS)

    Fondriest, Michele; Mitchell, Tom; Vassallo, Maurizio; Di Giulio, Giuseppe; Balsamo, Fabrizio; Passelegue, Francois; Pischiutta, Marta; Di Toro, Giulio

    2017-04-01

    The characterization of physical properties of fault zones (e.g., ultrasonic velocities, elastic moduli, porosity and fracture intensity of the fault zone rocks) is a relevant topic in reservoir geology (exploration and exploitation) and fault mechanics, for the modelling of both long-term quasi-static and fast dynamic fault zone evolution with time. Here we characterized the shallow subsurface velocity-elastic structure of the active Vado di Corno normal fault zone (Campo Imperatore, Central Apennines, Italy) which is up to > 300 m thick. Based on a detailed structural mapping of the fault footwall block covering a 2 km long fault segment, four main structural units separated by principal fault strands were recognized: (i) cataclastic unit, (ii) breccia unit, (iii) high-strain damage zone, (iv) low-strain damage zone. The single units were systematically sampled along a transect ( 200 m) orthogonal to the average strike of the fault and characterized in the laboratory in terms of petrophysical properties (i.e., Vp, Vs, static and dynamic elastic moduli, porosity). The cataclastic and breccia units (Vp = 4.68±0.43 kms-1, Vs = 2.68±0.24 kms-1) were significantly "slower" compared to the damage zone units (Vp = 5.43±0.53 kms-1, Vs = 3.20±0.29 kms-1). A general negative correlation between ultrasonic velocity and porosity values was reported. Moreover three dimensional acoustic anisotropy was quantified within the different units with respect to the mapped fault strands, and related to the deformation fabrics (i.e., open fractures, veins) observed at the sample scale. A Vp - Vs seismic refraction tomography was then performed in the field along a profile ( 90 m) across the fault zone. The tomographic results clearly illuminated fault-bounded rock bodies characterized by different velocities (i.e., elastic properties) and geometries which match with the ones deduced from the structural analysis of the fault zone exposures. Fracture intensity measurements (both at

  11. Constructing a 3D Crustal Model Across the Entire Contiguous US Using Broadband Rayleigh Wave Phase Velocity and Ellipticity Measurements

    NASA Astrophysics Data System (ADS)

    Lin, F. C.; Schmandt, B.

    2015-12-01

    Imaging the crust and lithosphere structure beneath North America is one of the primary targets for the NSF-funded EarthScope project. In this study, we apply the recently developed ambient noise and surface wave tomography methods to construct a detailed 3D crustal model across the entire contiguous US using USArray data between January 2007 and May 2015. By using both Rayleigh wave phase velocity and ellipticity measurements between 8 and 100 sec period, the shear velocity structure can be well resolved within the five crustal layers we modeled: three upper crust, one middle crust, and one lower crust. Clear correlations are observed between the resolved velocity anomalies and known geological features at all depths. In the uppermost crust, slow Vs anomalies are observed within major sedimentary environments such as the Williston Basin, Denver Basin, and Mississippi embayment, and fast Vs anomalies are observed in environments with deeply exhumed bedrock outcrops at the surface including the Laurentian Highlands, Ouachita-Ozark Interior Highlands, and Appalachian Highlands. In the deeper upper crust, slow anomalies are observed in deep sedimentary basins such as the Green River Basin, Appalachian Basin, Southern Oklahoma Aulacogen, and areas surrounding the Gulf of Mexico. Fast anomalies, on the other hand, are observed in the Colorado Plateau, within the Great Plains between the Front Ranges and Midcontinental Rift, and east of the Appalachian Mountains. At this depth, the Midcontinental Rift and Grenville Front clearly correlate well with various velocity structure boundaries. In the middle crust, slow anomalies are mostly observed in the tectonically active areas in the western US, but relatively slow anomalies are also observed southeast of the Precambrian Rift Margins. At this depth, fast anomalies are observed beneath various deep sedimentary basins such as the Southern Oklahoma Aulacogen, Appalachian Basin, and Central Valley. In the lower crust, a clear

  12. A 3D Velocity Model of the Central Cascadia Subduction Zone beneath the Oregon Continental Shelf and Coast Range

    NASA Astrophysics Data System (ADS)

    Kenyon, C.; Trehu, A. M.; Toomey, D. R.; Wilcock, W. S.; Carbotte, S. M.; Carton, H. D.; Canales, J.

    2013-12-01

    Signals from the R/V Langseth's tuned airgun array were recorded on 6 ocean-bottom seismometers and 35 EarthScope FlexArray seismometers deployed in the Oregon Coast Range from 43.5° to 45°N as a piggyback project on the 2012 Ridge2Trench experiment to image the structure of the Juan de Fuca plate. This section of the Juan de Fuca/North America plate boundary slipped in 2 moderate low-angle thrust earthquakes in 2004, and continuing seismicity has clustered around these events since that time. It has also been associated with a transition in megathrust recurrence rate based on paleoseismic data and exhibits anomalous locking characteristics in geodetic data. Previously acquired bathymetric, potential field, and seismic data indicate the presence of subducted seamounts in this region and hint at large velocity variations of the overlying forearc crust immediately above the plate boundary [Tréhu et al., 2012]. The sources for this study are ~18,000 airgun shots along 4 lines on the continental shelf and upper slope and a line oblique to the coast that extends across the margin to the trench (and ultimately to the ridge). Data quality is excellent, with strong Pg and PmP arrivals observed at most stations for all shots. A preliminary look at the data supports the presence of large along-strike velocity variations in this region. To date, ~2/3 of the data have been picked. We will present velocity models that merge the new data with constraints from 2D and 3D onshore/offshore data acquired in 1989 and 1996 to improve the resolution and extend the velocity model to the south to include Heceta Bank, a region of uplifted late Miocene and early Pliocene sediments underlain by a previously poorly resolved high density anomaly. [Tréhu, A.M., Blakely, R.J., Williams, M.C., Subducted seamounts and recent earthquakes beneath the central Cascadia forearc, Geology, v. 40, p. 103-106, 2012

  13. A Revised Stress Map of the Conterminous United States and Causal Links Between 3-D Density Structure and Intraplate Seismicity

    NASA Astrophysics Data System (ADS)

    Levandowski, W. B.; Shen, W.; Briggs, R. W.; Boyd, O. S.

    2016-12-01

    In the past decade, both seismic networks such as the Transportable Array and induced seismicity have provided an unprecedented number of earthquake moment tensors across the conterminous United States, allowing appraisal of the state of stress with ever-greater accuracy and spatial resolution. We invert 1896 moment tensors for the best-fitting stress tensor in each of 29 geographic subprovinces. Here, we focus on novel results from the central and eastern U.S. (CEUS). At the broadest scale, maximum horizontal compression rotates from NE-SW in the Northeast to ENE-WSW in the Midwest, and to E-W on the Great Plains as the style of faulting grades from thrust to strike-slip to normal. Yet contrary to common assertion, statistically significant differences exist between adjacent subprovinces. Principal stress rotations of up to 45° and changes in Aϕ of up to 1 (e.g., a switch from pure normal faulting to pure strike-slip faulting) occur over as little as 10s of km. Such differences have a profound impact on what fault orientations are compatible with slip slip. Forces applied at the plate edges or base cannot explain changes over such short distances; the cause must be internal to the lithosphere. To map these body forces across the conterminous United States, we use seismic velocity, gravity, topography, and heat flow to estimate 3-D density structure. Then finite-element modeling quantifies gravity-derived deviatoric loads and their interactions with far-field stress. The tensor sum of gravity-derived and plate-boundary stress generally reproduces variations observed independently in moment tensors. Moreover, seismicity—both natural and induced—focuses in regions of elevated stress, in particular the New Madrid and Eastern Tennessee seismic zones, Oklahoma and southcentral Kansas, and along the Rocky Mountain Front. These results suggest that by quantifying the net fault loading tensor, it becomes possible to determine whether any known or hypothesized fault

  14. 3D leaf water content mapping using terrestrial laser scanner backscatter intensity with radiometric correction

    NASA Astrophysics Data System (ADS)

    Zhu, Xi; Wang, Tiejun; Darvishzadeh, Roshanak; Skidmore, Andrew K.; Niemann, K. Olaf

    2015-12-01

    Leaf water content (LWC) plays an important role in agriculture and forestry management. It can be used to assess drought conditions and wildfire susceptibility. Terrestrial laser scanner (TLS) data have been widely used in forested environments for retrieving geometrically-based biophysical parameters. Recent studies have also shown the potential of using radiometric information (backscatter intensity) for estimating LWC. However, the usefulness of backscatter intensity data has been limited by leaf surface characteristics, and incidence angle effects. To explore the idea of using LiDAR intensity data to assess LWC we normalized (for both angular effects and leaf surface properties) shortwave infrared TLS data (1550 nm). A reflectance model describing both diffuse and specular reflectance was applied to remove strong specular backscatter intensity at a perpendicular angle. Leaves with different surface properties were collected from eight broadleaf plant species for modeling the relationship between LWC and backscatter intensity. Reference reflectors (Spectralon from Labsphere, Inc.) were used to build a look-up table to compensate for incidence angle effects. Results showed that before removing the specular influences, there was no significant correlation (R2 = 0.01, P > 0.05) between the backscatter intensity at a perpendicular angle and LWC. After the removal of the specular influences, a significant correlation emerged (R2 = 0.74, P < 0.05). The agreement between measured and TLS-derived LWC demonstrated a significant reduction of RMSE (root mean square error, from 0.008 to 0.003 g/cm2) after correcting for the incidence angle effect. We show that it is possible to use TLS to estimate LWC for selected broadleaved plants with an R2 of 0.76 (significance level α = 0.05) at leaf level. Further investigations of leaf surface and internal structure will likely result in improvements of 3D LWC mapping for studying physiology and ecology in vegetation.

  15. Enhanced RGB-D Mapping Method for Detailed 3D Indoor and Outdoor Modeling.

    PubMed

    Tang, Shengjun; Zhu, Qing; Chen, Wu; Darwish, Walid; Wu, Bo; Hu, Han; Chen, Min

    2016-09-27

    RGB-D sensors (sensors with RGB camera and Depth camera) are novel sensing systems that capture RGB images along with pixel-wise depth information. Although they are widely used in various applications, RGB-D sensors have significant drawbacks including limited measurement ranges (e.g., within 3 m) and errors in depth measurement increase with distance from the sensor with respect to 3D dense mapping. In this paper, we present a novel approach to geometrically integrate the depth scene and RGB scene to enlarge the measurement distance of RGB-D sensors and enrich the details of model generated from depth images. First, precise calibration for RGB-D Sensors is introduced. In addition to the calibration of internal and external parameters for both, IR camera and RGB camera, the relative pose between RGB camera and IR camera is also calibrated. Second, to ensure poses accuracy of RGB images, a refined false features matches rejection method is introduced by combining the depth information and initial camera poses between frames of the RGB-D sensor. Then, a global optimization model is used to improve the accuracy of the camera pose, decreasing the inconsistencies between the depth frames in advance. In order to eliminate the geometric inconsistencies between RGB scene and depth scene, the scale ambiguity problem encountered during the pose estimation with RGB image sequences can be resolved by integrating the depth and visual information and a robust rigid-transformation recovery method is developed to register RGB scene to depth scene. The benefit of the proposed joint optimization method is firstly evaluated with the publicly available benchmark datasets collected with Kinect. Then, the proposed method is examined by tests with two sets of datasets collected in both outside and inside environments. The experimental results demonstrate the feasibility and robustness of the proposed method.

  16. Efficacy of percutaneous intramyocardial injections using a nonfluoroscopic 3-D mapping based catheter system.

    PubMed

    Smits, Pieter C; van Langenhove, Glenn; Schaar, Michael; Reijs, Ambrose; Bakker, Willem H; van der Giessen, Wim J; Verdouw, Pieter D; Krenning, Eric P; Serruys, Patrick W

    2002-12-01

    Percutaneous transendomyocardial injection with an injection catheter is a new drug delivery method for e.g. therapeutic angiogenesis. Little is known about the efficacy of this drug delivery technique. We studied efficiency and retention of transendomyocardial injections with a NOGA guided injection catheter system by using scintigraphy with radio-labeled model drugs. Ten non-ischemic landrace pigs were used. In each animal 2-3 transendomyocardial injections were performed using a 3-D mapping based catheter system called NOGA. As a model for proteins like angiogenic growth factors we used (99m)Tc labeled albumin and as a model for small particles like microspheres or adenovirus we used (99m)Tc labeled colloid albumin. Efficiency of the injections and retention of the transendomyocardial deposited substance were evaluated by a gamma camera during and after injection of 0.1 or 0.2 ml. All 29 injections showed scintigraphic proof of intramyocardial deposition. The average injection efficiency of all 29 injections was 26 +/- 23%. The average injection efficiency of 0.1 and 0.2 ml injections were 33 +/- 30% (n = 8) and 24 +/- 20% (n = 21), respectively (p = 0.33). Intramyocardial retention curves of albumin showed a rapid wash-out within the first 2 hours of the injection, whereas the retention of colloid albumin showed no decrease. In conclusion, transendomyocardial delivery of proteins or particles with an injection catheter show favorable efficiency rates, however the retention time of intramyocardial deposited small proteins like albumin is short. This may indicate the need for sustained release systems of angiogenic growth factors for intramyocardal injection in therapeutic angiogenesis.

  17. Enhanced RGB-D Mapping Method for Detailed 3D Indoor and Outdoor Modeling

    PubMed Central

    Tang, Shengjun; Zhu, Qing; Chen, Wu; Darwish, Walid; Wu, Bo; Hu, Han; Chen, Min

    2016-01-01

    RGB-D sensors (sensors with RGB camera and Depth camera) are novel sensing systems that capture RGB images along with pixel-wise depth information. Although they are widely used in various applications, RGB-D sensors have significant drawbacks including limited measurement ranges (e.g., within 3 m) and errors in depth measurement increase with distance from the sensor with respect to 3D dense mapping. In this paper, we present a novel approach to geometrically integrate the depth scene and RGB scene to enlarge the measurement distance of RGB-D sensors and enrich the details of model generated from depth images. First, precise calibration for RGB-D Sensors is introduced. In addition to the calibration of internal and external parameters for both, IR camera and RGB camera, the relative pose between RGB camera and IR camera is also calibrated. Second, to ensure poses accuracy of RGB images, a refined false features matches rejection method is introduced by combining the depth information and initial camera poses between frames of the RGB-D sensor. Then, a global optimization model is used to improve the accuracy of the camera pose, decreasing the inconsistencies between the depth frames in advance. In order to eliminate the geometric inconsistencies between RGB scene and depth scene, the scale ambiguity problem encountered during the pose estimation with RGB image sequences can be resolved by integrating the depth and visual information and a robust rigid-transformation recovery method is developed to register RGB scene to depth scene. The benefit of the proposed joint optimization method is firstly evaluated with the publicly available benchmark datasets collected with Kinect. Then, the proposed method is examined by tests with two sets of datasets collected in both outside and inside environments. The experimental results demonstrate the feasibility and robustness of the proposed method. PMID:27690028

  18. 3-D or median map? Earthquake scenario ground-motion maps from physics-based models versus maps from ground-motion prediction equations

    NASA Astrophysics Data System (ADS)

    Porter, K.

    2015-12-01

    There are two common ways to create a ground-motion map for a hypothetical earthquake: using ground motion prediction equations (by far the more common of the two) and using 3-D physics-based modeling. The former is very familiar to engineers, the latter much less so, and the difference can present a problem because engineers tend to trust the familiar and distrust novelty. Maps for essentially the same hypothetical earthquake using the two different methods can look very different, while appearing to present the same information. Using one or the other can lead an engineer or disaster planner to very different estimates of damage and risk. The reasons have to do with depiction of variability, spatial correlation of shaking, the skewed distribution of real-world shaking, and the upward-curving relationship between shaking and damage. The scientists who develop the two kinds of map tend to specialize in one or the other and seem to defend their turf, which can aggravate the problem of clearly communicating with engineers.The USGS Science Application for Risk Reduction's (SAFRR) HayWired scenario has addressed the challenge of explaining to engineers the differences between the two maps, and why, in a disaster planning scenario, one might want to use the less-familiar 3-D map.

  19. Can we trace the eastern Gondwanan margin in Australia? New perspectives from transdimensional inversion of ambient noise for 3D shear velocity structure

    NASA Astrophysics Data System (ADS)

    Pilia, S.; Rawlinson, N.; Direen, N. G.

    2013-12-01

    Although the notion of Rodinia is quite well accepted in the geoscience community, the location and nature of the eastern continental margin of the Gondwana fragment in Australia is still vague and remains one of the most hotly debated topics in Australian geology. Moreover, most post-Rodinian reconstructions models choose not to tackle the ';Tasmanian challenge', and focus only on the tectonic evolution of mainland southeast Australia, thereby conveniently ignoring the wider tectonic implications of Tasmania's complex geological history. One of the chief limitations of the tectonic reconstructions in this region is a lack of information on Paleozoic (possibly Proterozoic) basement structures. Vast Mesozoic-Cainozoic sedimentary and volcanic cover sequences obscure older outcrops and limit the power of direct observational techniques. In response to these challenges, our effort is focused on ambient seismic noise for imaging 3D crustal shear velocity structure using surface waves, which is capable of illuminating basement structure beneath younger cover. The data used in this study is sourced from the WOMBAT transportable seismic array, which is compounded by around 650 stations spanning the majority of southeastern Australia, including Tasmania and several islands in Bass Strait. To produce the highest quality Green's functions, careful processing of the data has been performed, after which group velocity dispersion measurements have been carried out using a frequency-time analysis method on the symmetric component of the empirical Green's functions (EGFs). Group dispersion measurements from the EGFs have been inverted using a novel hierarchical, transdimensional, Bayesian algorithm to obtain Rayleigh-wave group velocity maps at different periods from 2 to 30 s. The new approach has several advantages in that the number and distribution of model parameters are implicitly controlled by the data, in which the noise is treated as unknown in the inversion. This

  20. CARTO-guided vs. NavX-guided pulmonary vein antrum isolation and pulmonary vein antrum isolation performed without 3-D mapping: effect of the 3-D mapping system on procedure duration and fluoroscopy time.

    PubMed

    Khaykin, Yaariv; Oosthuizen, Richard; Zarnett, Lauren; Wulffhart, Zaev A; Whaley, Bonnie; Hill, Carol; Giewercer, David; Verma, Atul

    2011-04-01

    Pulmonary vein antrum isolation (PVAI) guided by intracardiac echocardiography and a roaming circular mapping catheter is an effective treatment modality for atrial fibrillation. Unfortunately, the complexity of this technique leads to long procedure times and high fluoroscopy exposure. This study examined the effect of two different mapping systems on the procedural characteristics and clinical outcomes of PVAI for atrial fibrillation. Referred patients underwent PVAI using a magnetic-based 3-dimensional (3-D) mapping (CARTO® System; group 1), a current-based system (EnSite NavX™; group 2), or fluoroscopy without 3-D mapping (group 3) between February 2004 and November 2009. Data were analyzed from 71 patients in group 1, 165 patients in group 2, and 197 patients in group 3. Baseline characteristics and measured long-term outcomes did not differ between the groups. Although patients in group 1 were more likely to undergo a concurrent flutter ablation (P = 0.01), they had significantly shorter procedure time, fluoroscopy time, and radiofrequency energy delivery time compared with group 2 and 3 patients. No difference was detected among the groups with respect to recurrence, mean time to recurrence, or number of PVAI procedures. Use of a magnetic-based 3-D mapping system, which allows precise spatial localization of the ablation catheter, was associated with significantly lower procedure time, fluoroscopy duration, and radiofrequency energy delivery time during catheter ablation for atrial fibrillation compared with a current-based system and ablation performed without 3-D mapping, although measured short- and long-term clinical outcomes were similar.

  1. Note: A simple method to suppress the artificial noise for velocity map imaging spectroscopy.

    PubMed

    Qin, Zhengbo; Li, Chunsheng; Qu, Zehua; Tang, Zichao

    2015-04-01

    A simple method has been proposed to suppress artificial noise from the counts with respect to the central line (or point) for the reconstructed 3D images with cylindrical symmetry in the velocity-map imaging spectroscopy. A raw 2D projection around the z-axis (usually referred to as central line) for photodetachment, photoionization, or photodissociation experiments is pre-processed via angular tailored method to avoid the signal counts distributed near the central line (or point). Two types of photoelectron velocity-map imaging (O(-) and Au(-)⋅NH3) are demonstrated to give rise to the 3D images with significantly reduced central line noise after pre-processing operation. The major advantages of the pre-operation are the ability of suppression of central-line noise to resolve weak structures or vibrational excitation in atoms or molecules near photon threshold.

  2. Note: A simple method to suppress the artificial noise for velocity map imaging spectroscopy

    SciTech Connect

    Qin, Zhengbo E-mail: zctang@dicp.ac.cn; Li, Chunsheng; Qu, Zehua; Tang, Zichao E-mail: zctang@dicp.ac.cn

    2015-04-15

    A simple method has been proposed to suppress artificial noise from the counts with respect to the central line (or point) for the reconstructed 3D images with cylindrical symmetry in the velocity-map imaging spectroscopy. A raw 2D projection around the z-axis (usually referred to as central line) for photodetachment, photoionization, or photodissociation experiments is pre-processed via angular tailored method to avoid the signal counts distributed near the central line (or point). Two types of photoelectron velocity-map imaging (O{sup −} and Au{sup −} ⋅ NH{sub 3}) are demonstrated to give rise to the 3D images with significantly reduced central line noise after pre-processing operation. The major advantages of the pre-operation are the ability of suppression of central-line noise to resolve weak structures or vibrational excitation in atoms or molecules near photon threshold.

  3. Label-free characterization of white blood cells by measuring 3D refractive index maps

    PubMed Central

    Yoon, Jonghee; Kim, Kyoohyun; Park, HyunJoo; Choi, Chulhee; Jang, Seongsoo; Park, YongKeun

    2015-01-01

    The characterization of white blood cells (WBCs) is crucial for blood analyses and disease diagnoses. However, current standard techniques rely on cell labeling, a process which imposes significant limitations. Here we present three-dimensional (3D) optical measurements and the label-free characterization of mouse WBCs using optical diffraction tomography. 3D refractive index (RI) tomograms of individual WBCs are constructed from multiple two-dimensional quantitative phase images of samples illuminated at various angles of incidence. Measurements of the 3D RI tomogram of WBCs enable the separation of heterogeneous populations of WBCs using quantitative morphological and biochemical information. Time-lapse tomographic measurements also provide the 3D trajectory of micrometer-sized beads ingested by WBCs. These results demonstrate that optical diffraction tomography can be a useful and versatile tool for the study of WBCs. PMID:26504637

  4. Label-free characterization of white blood cells by measuring 3D refractive index maps.

    PubMed

    Yoon, Jonghee; Kim, Kyoohyun; Park, HyunJoo; Choi, Chulhee; Jang, Seongsoo; Park, YongKeun

    2015-10-01

    The characterization of white blood cells (WBCs) is crucial for blood analyses and disease diagnoses. However, current standard techniques rely on cell labeling, a process which imposes significant limitations. Here we present three-dimensional (3D) optical measurements and the label-free characterization of mouse WBCs using optical diffraction tomography. 3D refractive index (RI) tomograms of individual WBCs are constructed from multiple two-dimensional quantitative phase images of samples illuminated at various angles of incidence. Measurements of the 3D RI tomogram of WBCs enable the separation of heterogeneous populations of WBCs using quantitative morphological and biochemical information. Time-lapse tomographic measurements also provide the 3D trajectory of micrometer-sized beads ingested by WBCs. These results demonstrate that optical diffraction tomography can be a useful and versatile tool for the study of WBCs.

  5. Depth maps from seismic velocities help Wilcox exploration

    SciTech Connect

    Guzman, C.E.; Ramaswamy, M.; Wright, B.K.; Lawler, K.P.

    1996-10-28

    Depth maps generated from a combination of time maps and maximum coherency seismic (MCS) velocities have proven useful in the Tertiary Wilcox play in Louisiana and Texas. Applied aggressively in conjunction with new processing techniques, depth maps generated in this fashion can identify prospects not visible on time maps. Since depth conversion depends on velocities, the method relies on precision velocity measurements derived from an event-oriented algorithm. The velocities are carefully analyzed for misties and then contoured within geologic boundaries. Well information, if any, is also incorporated into the velocity map, and then the time map is converted to a depth map. Two case studies presented here calibrate the method. Other examples show how the technique helped locate a drill-site and predict geologic horizon depth and how it identified a structure not visible on time maps. The paper discusses Wilcox characteristics, the depth-conversion method, constant-velocity calibration, varying-velocity calibration, two applications, and coarse lithology prediction.

  6. a Review of Cooling Road Maps for 3d Chip Packages

    NASA Astrophysics Data System (ADS)

    Agonafer, Dereje

    The microelectronics industry has thrived through dimensional scaling and corresponding reduction in cost and increase in performance. It has been reported that the average selling price of a transistor has reduced from a few dollars in the early 50's to a billionth of a dollar in the early 2000. It has, however, become more difficult to sustain reduction in cost by scaling. Also, while new technology nodes results in reduced gate delay, it also effects an increase in the interconnect delay. One approach to delaying new technology node and improving performance is through reduction in interconnect delay through packaging. In particular, 3-D Through-Silicon-Via (3D TSV) technology is emerging as a powerful technology to reduce package footprint, decrease interconnection power, higher frequencies, and provide efficient integration of heterogeneous devices. TSVs provide high speed signal propagation due to reduced interconnect lengths as compared to wirebonding and SOC (system-on-chip). However, with many advantages of 3D ICs over conventional 2D counterpart, there are some inherent thermal-mechanical-electrical challenges that need to be addressed before 3D ICs could become mainstream. This chapter talks about a few of the 3D TSV IC challenges from the thermal, mechanical and the performance standpoint of view. It also discusses a novel technique for high powered 3D IC cooling to sub-ambient temperatures using thermo-electric cooler (TEC).

  7. 3-D uncertainty-based topographic change detection with structure-from-motion photogrammetry and precision maps

    NASA Astrophysics Data System (ADS)

    James, Mike R.; Robson, Stuart; Smith, Mark W.

    2017-04-01

    Structure-from-motion (SfM) software greatly facilitates the generation of 3-D surface models from photographs, but doesn't provide the detailed error metrics that are characteristic of rigorous photogrammetry. Here, we present a novel approach to generate maps of 3-D survey precision which describe the spatial variability in 3-D photogrammetric and georeferencing precision across surveys. Such maps then enable confidence-bounded quantification of 3-D topographic change that, for the first time, specifically account for the precision characteristics of photo-based surveys. Precision maps for surveys georeferenced either directly using camera positions or by ground control, illustrate the spatial variability in precision that is associated with the relative influences of photogrammetric (e.g. image network geometry, tie point quality) and georeferencing considerations. For common SfM-based software (which does not provide precision estimates directly), precision maps can be generated using a Monte Carlo procedure. Confidence-bounded full 3-D change detection between repeat surveys with associated precision maps, is then derived through adapting a state-of-the-art point-cloud comparison (M3C2; Lague, et al., 2013). We demonstrate the approach using annual aerial SfM surveys of an eroding badland, benchmarked against TLS data for validation. 3-D precision maps enable more probable erosion patterns to be identified than existing analyses. If precision is limited by weak georeferencing (e.g. using direct georeferencing with camera positions of multi-metre precision, such as from a consumer UAV), then overall survey precision scales as n-1 /2 of the control precision (n = number of images). However, direct georeferencing results from SfM software (PhotoScan) were not consistent with those from rigorous photogrammetric analysis. Our method not only enables confidence-bounded 3-D change detection and uncertainty-based DEM processing, but also provides covariance

  8. SAETTA: high resolution 3D mapping of the lightning activity around Corsica Island

    NASA Astrophysics Data System (ADS)

    Coquillat, Sylvain; Defer, Eric; Lambert, Dominique; Pinty, Jean-Pierre; Pont, Véronique; Prieur, Serge

    2017-04-01

    In the frame of the French atmospheric observatory CORSiCA (http://www.obs-mip.fr/corsica), a total lightning activity detection system called SAETTA (Suivi de l'Activité Electrique Tridimensionnelle Totale de l'Atmosphère) has been deployed in Corsica Island in order to strengthen the potential of observation of convective events causing heavy rainfall and flash floods in the West Mediterranean basin. SAETTA is a network of 12 LMA stations (Lightning Mapping Array) developed by New Mexico Tech (USA). The instrument allows observing lightning flashes in 3D and real time, at high temporal (80 µs) and spatial resolutions. It detects the radiations emitted by cloud discharges in the 60-66 MHz band, in a radius of about 350 km from the centre of the network, in passive mode and standalone (solar panel and batteries). Initially deployed in May 2014, SAETTA operated from July 13 to October 20 in 2014 and from April 19 to December 1st in 2015. It is now in permanent operation since 16 April 2016. Many high quality observations have been performed so far that provide an accurate location in space and time of the convective events. They also bring interesting dynamical and microphysical features of those events. For example the intensity of the convective surges, the transport of charged ice particles in the stratiform area of the thunderclouds can be deduced from SAETTA observations. Specific events have also been detected as well: bolts-from-the-blue, inter cloud discharges, high level discharges in convective but also in stratiform areas, inverted dipoles. The specific lightning patterns of 2015 illustrate the complex influence of the relief, probably via slope and valley winds over Corsica and via induced lee-side convergences over the sea. SAETTA is expected to operate for at least a decade over Corsica so it will participate to the calibration/validation of upcoming lightning detectors from space such as MTG-LI. It will also be a key instrument during the field

  9. PF2 fit: Polar Fast Fourier Matched Alignment of Atomistic Structures with 3D Electron Microscopy Maps

    PubMed Central

    Bettadapura, Radhakrishna; Rasheed, Muhibur; Vollrath, Antje; Bajaj, Chandrajit

    2015-01-01

    There continue to be increasing occurrences of both atomistic structure models in the PDB (possibly reconstructed from X-ray diffraction or NMR data), and 3D reconstructed cryo-electron microscopy (3D EM) maps (albeit at coarser resolution) of the same or homologous molecule or molecular assembly, deposited in the EMDB. To obtain the best possible structural model of the molecule at the best achievable resolution, and without any missing gaps, one typically aligns (match and fits) the atomistic structure model with the 3D EM map. We discuss a new algorithm and generalized framework, named PF2 fit (Polar Fast Fourier Fitting) for the best possible structural alignment of atomistic structures with 3D EM. While PF2 fit enables only a rigid, six dimensional (6D) alignment method, it augments prior work on 6D X-ray structure and 3D EM alignment in multiple ways: Scoring. PF2 fit includes a new scoring scheme that, in addition to rewarding overlaps between the volumes occupied by the atomistic structure and 3D EM map, rewards overlaps between the volumes complementary to them. We quantitatively demonstrate how this new complementary scoring scheme improves upon existing approaches. PF2 fit also includes two scoring functions, the non-uniform exterior penalty and the skeleton-secondary structure score, and implements the scattering potential score as an alternative to traditional Gaussian blurring. Search. PF2 fit utilizes a fast polar Fourier search scheme, whose main advantage is the ability to search over uniformly and adaptively sampled subsets of the space of rigid-body motions. PF2 fit also implements a new reranking search and scoring methodology that considerably improves alignment metrics in results obtained from the initial search. PMID:26469938

  10. Comparative efficiency of various electrical and electromagnetic methods in mapping shallow 3-D conductors encountered in urban geophysical problems

    NASA Astrophysics Data System (ADS)

    Verma, S. K.; Manglik, A.; Krishna Murthy, N.; Ananda Rao, V.; Bhatt, K. M.; Chandra, S.; Tezkan, B.; Harinarayana, T.; Scholl, C.; Patro, P. K.; Dutta, S.

    2009-12-01

    Localized electrical conductors are frequently encountered in a variety of problems relating to urban geophysical studies like mapping of pollution plumes, waste disposal, fracture zones in hard rocks, zoning of seismically hazardous areas, etc. Such targets can be represented by shallow 3-D conductors that yield distinct signatures on the surface measurements employing various electrical and electromagnetic methods like: electrical resistivity tomography (ERT), frequency or time-domain electromagnetic (FEM or TEM) surveys, VLF or Radio VLF surveys, etc. Suitability of a particular method in delineating such 3-D conductors critically depends on factors like scale and cost of the survey, topography, vegetation, ambient EM noise, etc. Choice of the most appropriate method thus becomes important in efficiently procuring the desired information optimally. Comparative performance of some of the commonly employed electrical and EM methods in delineating 3-D conductors is evaluated based on the surveys carried out over conductive top regions of weathered kimberlite pipes, representing 3-D conductors, occurring around Wajrakarur, A.P., India. The results will be be useful in optimizing survey strategy for urban problems requiring configuration of 3-D conductors. ERT image of a weathered kimberlite pipe 3-D electrical structure of a weathered kimberlite pipe

  11. 3D Euler equations and ideal MHD mapped to regular systems: Probing the finite-time blowup hypothesis

    NASA Astrophysics Data System (ADS)

    Bustamante, Miguel D.

    2011-06-01

    We prove by an explicit construction that solutions to incompressible 3D Euler equations defined in the periodic cube Ω=[0 can be mapped bijectively to a new system of equations whose solutions are globally regular. We establish that the usual Beale-Kato-Majda criterion for finite-time singularity (or blowup) of a solution to the 3D Euler system is equivalent to a condition on the corresponding regular solution of the new system. In the hypothetical case of Euler finite-time singularity, we provide an explicit formula for the blowup time in terms of the regular solution of the new system. The new system is amenable to being integrated numerically using similar methods as in Euler equations. We propose a method to simulate numerically the new regular system and describe how to use this to draw robust and reliable conclusions on the finite-time singularity problem of Euler equations, based on the conservation of quantities directly related to energy and circulation. The method of mapping to a regular system can be extended to any fluid equation that admits a Beale-Kato-Majda type of theorem, e.g. 3D Navier-Stokes, 2D and 3D magnetohydrodynamics, and 1D inviscid Burgers. We discuss briefly the case of 2D ideal magnetohydrodynamics. In order to illustrate the usefulness of the mapping, we provide a thorough comparison of the analytical solution versus the numerical solution in the case of 1D inviscid Burgers equation.

  12. A Global 3D P-Velocity Model of the Earth's Crust and Mantle for Improved Event Location

    NASA Astrophysics Data System (ADS)

    Ballard, S.; Young, C. J.; Hipp, J. R.; Chang, M.; Lewis, J.; Begnaud, M. L.; Rowe, C. A.

    2009-12-01

    further refinement takes place around adjusted nodes to form a new model, and the process is repeated until no more improvement can be obtained. We thus produce a smooth, multi-resolution model with node density appropriate to both ray coverage and the velocity gradients required by the data. This scheme is computationally expensive, so we use a Java-based distributed computing framework developed by Sandia National Laboratories (SNL), providing us with 300+ processors having an efficiency of better than 90% for the calculations. We evaluate our model both in terms of travel time residual variance reduction and in location improvement for GT events. For the latter, we use a new multi-threaded version of the SNL-developed LocOO code modified to use 3D velocity models.

  13. Advances in animal ecology from 3D ecosystem mapping with LiDAR

    NASA Astrophysics Data System (ADS)

    Davies, A.; Asner, G. P.

    2015-12-01

    The advent and recent advances of Light Detection and Ranging (LiDAR) have enabled accurate measurement of 3D ecosystem structure. Although the use of LiDAR data is widespread in vegetation science, it has only recently (< 14 years) been applied to animal ecology. Despite such recent application, LiDAR has enabled new insights in the field and revealed the fundamental importance of 3D ecosystem structure for animals. We reviewed the studies to date that have used LiDAR in animal ecology, synthesising the insights gained. Structural heterogeneity is most conducive to increased animal richness and abundance, and increased complexity of vertical vegetation structure is more positively influential than traditionally measured canopy cover, which produces mixed results. However, different taxonomic groups interact with a variety of 3D canopy traits and some groups with 3D topography. LiDAR technology can be applied to animal ecology studies in a wide variety of environments to answer an impressive array of questions. Drawing on case studies from vastly different groups, termites and lions, we further demonstrate the applicability of LiDAR and highlight new understanding, ranging from habitat preference to predator-prey interactions, that would not have been possible from studies restricted to field based methods. We conclude with discussion of how future studies will benefit by using LiDAR to consider 3D habitat effects in a wider variety of ecosystems and with more taxa to develop a better understanding of animal dynamics.

  14. True-3D Strain Mapping for Assessment of Material Deformation by Synchrotron X-Ray Microtomography

    SciTech Connect

    Ahn, J.J.; Toda, H.; Niinomi, M.; Kobayashi, T.; Akahori, T.; Uesugi, K.

    2005-04-09

    Downsizing of products with complex shapes has been accelerated thanks to the rapid development of electrodevice manufacturing technology. Micro electromechanical systems (MEMS) are one of such typical examples. 3D strain measurement of such miniature products is needed to ensure their reliability. In the present study, as preliminary trial for it 3D tensile deformation behavior of a pure aluminum wire is examined using the synchrotron X-ray microtomography technique at Spring-8, Japan. Multipurpose in-situ tester is used to investigate real-time tensile deformation behavior of the Al wire. Tensile tests are carried out under strokes of 0, 0.005, 0.01 and 0.015mm. It measures 3D local deformation of a region of interest by tracking a relative movement of a pair of particles at each point. Local deformation behavior of the Al wire is identified to be different from macroscopic deformation behavior. It may be closely associated with underlying microstructure.

  15. Edge-based intramode selection for depth-map coding in 3D-HEVC.

    PubMed

    Park, Chun-Su

    2015-01-01

    The 3D video extension of High Efficiency Video Coding (3D-HEVC) is the state-of-the-art video coding standard for the compression of the multiview video plus depth format. In the 3D-HEVC design, new depth-modeling modes (DMMs) are utilized together with the existing intraprediction modes for depth intracoding. The DMMs can provide more accurate prediction signals and thereby achieve better compression efficiency. However, testing the DMMs in the intramode decision process causes a drastic increase in the computational complexity. In this paper, we propose a fast mode decision algorithm for depth intracoding. The proposed algorithm first performs a simple edge classification in the Hadamard transform domain. Then, based on the edge classification results, the proposed algorithm selectively omits unnecessary DMMs in the mode decision process. Experimental results demonstrate that the proposed algorithm speeds up the mode decision process by up to 37.65% with negligible loss of coding efficiency.

  16. Three-dimensional correction of conduction velocity in the embryonic heart using integrated optical mapping and optical coherence tomography

    PubMed Central

    Ma, Pei; Wang, Yves T.; Gu, Shi; Watanabe, Michiko; Jenkins, Michael W.; Rollins, Andrew M.

    2014-01-01

    Abstract. Optical mapping (OM) of cardiac electrical activity conventionally collects information from a three-dimensional (3-D) surface as a two-dimensional (2-D) projection map. When applied to measurements of the embryonic heart, this method ignores the substantial and complex curvature of the heart surface, resulting in significant errors when calculating conduction velocity, an important electrophysiological parameter. Optical coherence tomography (OCT) is capable of imaging the 3-D structure of the embryonic heart and accurately characterizing the surface topology. We demonstrate an integrated OCT/OM imaging system capable of simultaneous conduction mapping and 3-D structural imaging. From these multimodal data, we obtained 3-D activation maps and corrected conduction velocity maps of early embryonic quail hearts. 3-D correction eliminates underestimation bias in 2-D conduction velocity measurements, therefore enabling more accurate measurements with less experimental variability. The integrated system will also open the door to correlate the structure and electrophysiology, thereby improving our understanding of heart development. PMID:24996663

  17. GIS prospectivity mapping and 3D modeling validation for potential uranium deposit targets in Shangnan district, China

    NASA Astrophysics Data System (ADS)

    Xie, Jiayu; Wang, Gongwen; Sha, Yazhou; Liu, Jiajun; Wen, Botao; Nie, Ming; Zhang, Shuai

    2017-04-01

    Integrating multi-source geoscience information (such as geology, geophysics, geochemistry, and remote sensing) using GIS mapping is one of the key topics and frontiers in quantitative geosciences for mineral exploration. GIS prospective mapping and three-dimensional (3D) modeling can be used not only to extract exploration criteria and delineate metallogenetic targets but also to provide important information for the quantitative assessment of mineral resources. This paper uses the Shangnan district of Shaanxi province (China) as a case study area. GIS mapping and potential granite-hydrothermal uranium targeting were conducted in the study area combining weights of evidence (WofE) and concentration-area (C-A) fractal methods with multi-source geoscience information. 3D deposit-scale modeling using GOCAD software was performed to validate the shapes and features of the potential targets at the subsurface. The research results show that: (1) the known deposits have potential zones at depth, and the 3D geological models can delineate surface or subsurface ore-forming features, which can be used to analyze the uncertainty of the shape and feature of prospectivity mapping at the subsurface; (2) single geochemistry anomalies or remote sensing anomalies at the surface require combining the depth exploration criteria of geophysics to identify potential targets; and (3) the single or sparse exploration criteria zone with few mineralization spots at the surface has high uncertainty in terms of the exploration target.

  18. A mapping of an ensemble of mitochondrial sequences for various organisms into 3D space based on the word composition.

    PubMed

    Aita, Takuyo; Nishigaki, Koichi

    2012-11-01

    To visualize a bird's-eye view of an ensemble of mitochondrial genome sequences for various species, we recently developed a novel method of mapping a biological sequence ensemble into Three-Dimensional (3D) vector space. First, we represented a biological sequence of a species s by a word-composition vector x(s), where its length [absolute value]x(s)[absolute value] represents the sequence length, and its unit vector x(s)/[absolute value]x(s)[absolute value] represents the relative composition of the K-tuple words through the sequence and the size of the dimension, N=4(K), is the number of all possible words with the length of K. Second, we mapped the vector x(s) to the 3D position vector y(s), based on the two following simple principles: (1) [absolute value]y(s)[absolute value]=[absolute value]x(s)[absolute value] and (2) the angle between y(s) and y(t) maximally correlates with the angle between x(s) and x(t). The mitochondrial genome sequences for 311 species, including 177 Animalia, 85 Fungi and 49 Green plants, were mapped into 3D space by using K=7. The mapping was successful because the angles between vectors before and after the mapping highly correlated with each other (correlation coefficients were 0.92-0.97). Interestingly, the Animalia kingdom is distributed along a single arc belt (just like the Milky Way on a Celestial Globe), and the Fungi and Green plant kingdoms are distributed in a similar arc belt. These two arc belts intersect at their respective middle regions and form a cross structure just like a jet aircraft fuselage and its wings. This new mapping method will allow researchers to intuitively interpret the visual information presented in the maps in a highly effective manner.

  19. Joint 2D and 3D phase processing for quantitative susceptibility mapping: application to 2D echo-planar imaging.

    PubMed

    Wei, Hongjiang; Zhang, Yuyao; Gibbs, Eric; Chen, Nan-Kuei; Wang, Nian; Liu, Chunlei

    2017-04-01

    Quantitative susceptibility mapping (QSM) measures tissue magnetic susceptibility and typically relies on time-consuming three-dimensional (3D) gradient-echo (GRE) MRI. Recent studies have shown that two-dimensional (2D) multi-slice gradient-echo echo-planar imaging (GRE-EPI), which is commonly used in functional MRI (fMRI) and other dynamic imaging techniques, can also be used to produce data suitable for QSM with much shorter scan times. However, the production of high-quality QSM maps is difficult because data obtained by 2D multi-slice scans often have phase inconsistencies across adjacent slices and strong susceptibility field gradients near air-tissue interfaces. To address these challenges in 2D EPI-based QSM studies, we present a new data processing procedure that integrates 2D and 3D phase processing. First, 2D Laplacian-based phase unwrapping and 2D background phase removal are performed to reduce phase inconsistencies between slices and remove in-plane harmonic components of the background phase. This is followed by 3D background phase removal for the through-plane harmonic components. The proposed phase processing was evaluated with 2D EPI data obtained from healthy volunteers, and compared against conventional 3D phase processing using the same 2D EPI datasets. Our QSM results were also compared with QSM values from time-consuming 3D GRE data, which were taken as ground truth. The experimental results show that this new 2D EPI-based QSM technique can produce quantitative susceptibility measures that are comparable with those of 3D GRE-based QSM across different brain regions (e.g. subcortical iron-rich gray matter, cortical gray and white matter). This new 2D EPI QSM reconstruction method is implemented within STI Suite, which is a comprehensive shareware for susceptibility imaging and quantification. Copyright © 2016 John Wiley & Sons, Ltd.

  20. Mapping Yangtze coastal surface velocities from ASAR

    NASA Astrophysics Data System (ADS)

    Wang, L.; Zhou, Y.; Ge, J.

    2013-12-01

    The routine sea surface current velocity measurement is principal and essential for assimilation in ocean circulation models, further for resolving coastal ocean dynamics. The obvious and unique advantages of Synthetic Aperture Radar (SAR) systems have been successfully demonstrated over variously routine ocean surface phenomena. In this paper, the detailed procedures to derive the sea surface range Doppler velocities are presented from ASAR Wide Swath Mode (WSM) products. Doppler anomaly and Doppler range velocity are analyzed in measurements by three different WSM scenes over Yangtze Estuary. At the meantime, this Doppler centroid method is validated with simulated current fields from the numerical circulation model Finite-Volume Coastal Ocean Model (FVCOM) and the results are promising. Comparisons to FVCOM data show that ASAR are capable to retrieve large gradient variation of surface velocities and capture quantitative information of strong surface currents, which are immensely attractive for the routine quantitative observation of sea surface currents from the radial Doppler anomaly. Surface Doppler velocity (V_D) from ASAR WSM scene on 31 Jan 2005 with the corresponding simulated surface currents based on FVCOM superimposed. Doppler anomaly RMS bias over land of the scenes

  1. Flexible drift-compensation system for precise 3D force mapping in severe drift environments

    SciTech Connect

    Rahe, Philipp; Schuette, Jens; Kuehnle, Angelika; Schniederberend, Werner; Reichling, Michael; Abe, Masayuki; Sugimoto, Yoshiaki

    2011-06-15

    The acquisition of dense 3D data sets is of great importance, but also a challenge for scanning probe microscopy (SPM). Thermal drift often induces severe distortions in the data, which usually constrains the acquisition of dense data sets to experiments under ultra-high vacuum and low-temperature conditions. Atom tracking is an elegant approach to compensate for thermal drift and to position the microscope tip with highest precision. Here, we present a flexible drift compensation system which can easily be connected to existing SPM hardware. Furthermore, we describe a 3D data acquisition and position correction protocol, which is capable of handling large and non-linear drift as typically present in room temperature measurements. This protocol is based on atom-tracking for precise positioning of the tip and we are able to acquire dense 3D data sets over several hours at room temperature. The performance of the protocol is demonstrated by presenting 3D data taken on a CaCO{sub 3}(1014) surface with the data density being as large as 85x85x500 pixel.

  2. Fluorescent stereo microscopy for 3D surface profilometry and deformation mapping.

    PubMed

    Hu, Zhenxing; Luo, Huiyang; Du, Yingjie; Lu, Hongbing

    2013-05-20

    Recently, mechanobiology has received increased attention. For investigation of biofilm and cellular tissue, measurements of the surface topography and deformation in real-time are a pre-requisite for understanding the growth mechanisms. In this paper, a novel three-dimensional (3D) fluorescent microscopic method for surface profilometry and deformation measurements is developed. In this technique a pair of cameras are connected to a binocular fluorescent microscope to acquire micrographs from two different viewing angles of a sample surface doped or sprayed with fluorescent microparticles. Digital image correlation technique is used to search for matching points in the pairing fluorescence micrographs. After calibration of the system, the 3D surface topography is reconstructed from the pair of planar images. When the deformed surface topography is compared with undeformed topography using fluorescent microparticles for movement tracking of individual material points, the full field deformation of the surface is determined. The technique is demonstrated on topography measurement of a biofilm, and also on surface deformation measurement of the biofilm during growth. The use of 3D imaging of the fluorescent microparticles eliminates the formation of bright parts in an image caused by specular reflections. The technique is appropriate for non-contact, full-field and real-time 3D surface profilometry and deformation measurements of materials and structures at the microscale.

  3. 2D map projections for visualization and quantitative analysis of 3D fluorescence micrographs

    PubMed Central

    Sendra, G. Hernán; Hoerth, Christian H.; Wunder, Christian; Lorenz, Holger

    2015-01-01

    We introduce Map3-2D, a freely available software to accurately project up to five-dimensional (5D) fluorescence microscopy image data onto full-content 2D maps. Similar to the Earth’s projection onto cartographic maps, Map3-2D unfolds surface information from a stack of images onto a single, structurally connected map. We demonstrate its applicability for visualization and quantitative analyses of spherical and uneven surfaces in fixed and dynamic live samples by using mammalian and yeast cells, and giant unilamellar vesicles. Map3-2D software is available at http://www.zmbh.uni-heidelberg.de//Central_Services/Imaging_Facility/Map3-2D.html. PMID:26208256

  4. Mapping molecular orientational distributions for biological sample in 3D (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    HE, Wei; Ferrand, Patrick; Richter, Benjamin; Bastmeyer, Martin; Brasselet, Sophie

    2016-04-01

    Measuring molecular orientation properties is very appealing for scientists in molecular and cell biology, as well as biomedical research. Orientational organization at the molecular scale is indeed an important brick to cells and tissues morphology, mechanics, functions and pathologies. Recent work has shown that polarized fluorescence imaging, based on excitation polarization tuning in the sample plane, is able to probe molecular orientational order in biological samples; however this applies only to information in 2D, projected in the sample plane. To surpass this limitation, we extended this approach to excitation polarization tuning in 3D. The principle is based on the decomposition of any arbitrary 3D linear excitation in a polarization along the longitudinal z-axis, and a polarization in the transverse xy-sample plane. We designed an interferometer with one arm generating radial polarization light (thus producing longitudinal polarization under high numerical aperture focusing), the other arm controlling a linear polarization in the transverse plane. The amplitude ratio between the two arms can vary so as to get any linear polarized excitation in 3D at the focus of a high NA objective. This technique has been characterized by polarimetry imaging at the back focal plane of the focusing objective, and modeled theoretically. 3D polarized fluorescence microscopy is demonstrated on actin stress fibers in non-flat cells suspended on synthetic polymer structures forming supporting pillars, for which heterogeneous actin orientational order could be identified. This technique shows a great potential in structural investigations in 3D biological systems, such as cell spheroids and tissues.

  5. Mapping the North Sea base-Quaternary: using 3D seismic to fill a gap in the geological record

    NASA Astrophysics Data System (ADS)

    Lamb, Rachel; Huuse, Mads; Stewart, Margaret; Brocklehurst, Simon H.

    2014-05-01

    The identification and mapping of the base-Quaternary boundary in the central parts of the North Sea is problematic due to the change from an unconformable transition between Pliocene and Pleistocene deltaic deposits in the southern North Sea to a conformable one further north (Sejrup et al 1991; Gatliff et al 1994). The best estimates of the transition use seismic reflection data to identify a 'crenulated reflector' (Buckley 2012), or rely on correlating sparse biostratigraphy (Cameron et al 1987). Recent integration of biostratigraphy, pollen analysis, paleomagnetism and amino acid analysis in the Dutch and Danish sectors (Rasmussen et al 2005; Kuhlmann et al 2006) allows greater confidence in the correlation to a regional 3D seismic dataset and show that the base-Quaternary can be mapped across the entire basin. The base-Quaternary has been mapped using the PGS MegaSurvey dataset from wells in the Danish Sector along the initially unconformable horizon and down the delta front into the more conformable basin giving a high degree of confidence in the horizon pick. The mapped horizon is presented here alongside the difference between this new interpretation and the previously interpreted base-Quaternary (Buckley 2012). The revised base-Quaternary surface reaches a depth of 1248 ms TWT or approximately 1120 m (assuming average velocity of 1800 m/s) showing an elongate basin shape that follows the underlying structure of the Central Graben. The difference between the revised base-Quaternary and the traditional base-Quaternary reaches a maximum of over 600 ms TWT or approximately 540 m in the south-west with over 300 ms TWT or approximately 270 m at the Josephine well (56° 36.11'N, 2° 27.09'E) in the centre of the basin. Mapping this new base-Quaternary allows for the interpretation of the paleo-envionrment during the earliest Quaternary. Seismic attribute analysis indicates a deep water basin with sediment deposition from multiple deltas and redistribution by deep

  6. Segmentation of Hypocenters and 3-D Velocity Structure around the Kii Peninsula Revealed by Onshore and Offshore Seismic Observations

    NASA Astrophysics Data System (ADS)

    Akuhara, T.; Mochizuki, K.; Nakahigashi, K.; Yamada, T.; Shinohara, M.; Sakai, S.; Kanazawa, T.; Uehira, K.; Shimizu, H.

    2013-12-01

    The Philippine Sea Plate subducts beneath the Eurasian Plate at a rate of ~4 cm/year along the Nankai Trough, southwest of Japan. Around the Kii Peninsula, the rupture boundary of the historical Tonankai and Nankai large earthquakes is located, and previous researches have revealed along-strike segmentation of hypocenters [Mochizuki et al., 2010], P-wave anisotropy [Ishise et al., 2009], low frequency earthquake (LFE) distribution [e.g., Obara, 2010] and subduction depth of the Philippine Sea (PHS) Plate, or there may exist a split in the PHS Plate [Ide et al., 2010]. To investigate such segmentation, in our previous work we determined 3-D velocity structure and hypocenters using P- and S-wave arrival times of earthquakes recorded by both ocean bottom seismometers (OBSs) that were deployed from 2003 to 2007 and on-land stations [Akuhara et al., 2013]. As a result, it was discovered that Vp/Vs ratio is also segmented within the oceanic crust and at the bottom of the overriding plate, which coincides with the LFE distribution: segment A is located along the Kii Channel, segment B around the western Kii Peninsula, and segment C around the eastern Kii Peninsula. In segment B, Vp/Vs ratio is low within the oceanic crust and LFE cluster characterized by an anomalously small amount of cumulative slip, compared to the other LFE clusters around the Kii Peninsula, is located [Obara, 2010]. The difference of Vp/Vs ratio and LFE activity among segments were interpreted as difference of pore fluid pressure. In fact, similar segmentation can be seen in hypocenters: Segment A with concentrated seismicity in the oceanic mantle, segment B with that in the oceanic crust, and segment C with little seismicity. To derive characteristic patterns of the hypocenters, we conducted a cluster analysis of earthquakes based on waveform similarity represented by cross-correlation coefficients (CCs) [e.g., Cattaneo, 1999], in which we took varying structural site effects among the OBS stations

  7. Advances in 3D soil mapping and water content estimation using multi-channel ground-penetrating radar

    NASA Astrophysics Data System (ADS)

    Moysey, S. M.

    2011-12-01

    Multi-channel ground-penetrating radar systems have recently become widely available, thereby opening new possibilities for shallow imaging of the subsurface. One advantage of these systems is that they can significantly reduce survey times by simultaneously collecting multiple lines of GPR reflection data. As a result, it is becoming more practical to complete 3D surveys - particularly in situations where the subsurface undergoes rapid changes, e.g., when monitoring infiltration and redistribution of water in soils. While 3D and 4D surveys can provide a degree of clarity that significantly improves interpretation of the subsurface, an even more powerful feature of the new multi-channel systems for hydrologists is their ability to collect data using multiple antenna offsets. Central mid-point (CMP) surveys have been widely used to estimate radar wave velocities, which can be related to water contents, by sequentially increasing the distance, i.e., offset, between the source and receiver antennas. This process is highly labor intensive using single-channel systems and therefore such surveys are often only performed at a few locations at any given site. In contrast, with multi-channel GPR systems it is possible to physically arrange an array of antennas at different offsets, such that a CMP-style survey is performed at every point along a radar transect. It is then possible to process this data to obtain detailed maps of wave velocity with a horizontal resolution on the order of centimeters. In this talk I review concepts underlying multi-channel GPR imaging with an emphasis on multi-offset profiling for water content estimation. Numerical simulations are used to provide examples that illustrate situations where multi-offset GPR profiling is likely to be successful, with an emphasis on considering how issues like noise, soil heterogeneity, vertical variations in water content and weak reflection returns affect algorithms for automated analysis of the data. Overall

  8. Measuring distances and reddenings for a billion stars: Toward a 3D dust map from Pan-STARRS 1

    SciTech Connect

    Green, Gregory Maurice; Finkbeiner, Douglas P.; Schlafly, Edward F.; Rix, Hans-Walter; Jurić, Mario; Burgett, Will; Chambers, Kenneth C.; Flewelling, Heather; Kudritzki, Rolf Peter; Magnier, Eugene; Tonry, John; Wainscoat, Richard; Waters, Christopher; Draper, Peter W.; Metcalfe, Nigel; Martin, Nicolas

    2014-03-10

    We present a method to infer reddenings and distances to stars based only on their broad-band photometry, and show how this method can be used to produce a three-dimensional (3D) dust map of the Galaxy. Our method samples from the full probability density function of distance, reddening, and stellar type for individual stars, as well as the full uncertainty in reddening as a function of distance in the 3D dust map. We incorporate prior knowledge of the distribution of stars in the Galaxy and the detection limits of the survey. For stars in the Pan-STARRS 1 (PS1) 3π survey, we demonstrate that our reddening estimates are unbiased and accurate to ∼0.13 mag in E(B – V) for the typical star. Based on comparisons with mock catalogs, we expect distances for main-sequence stars to be constrained to within ∼20%-60%, although this range can vary, depending on the reddening of the star, the precise stellar type, and its position on the sky. A later paper will present a 3D map of dust over the three quarters of the sky surveyed by PS1. Both the individual stellar inferences and the 3D dust map will enable a wealth of Galactic science in the plane. The method we present is not limited to the passbands of the PS1 survey but may be extended to incorporate photometry from other surveys, such as the Two Micron All Sky Survey, the Sloan Digital Sky Survey (where available), and in the future, LSST and Gaia.

  9. An Efficient Algorithm for Mapping Imaging Data to 3D Unstructured Grids in Computational Biomechanics

    SciTech Connect

    Einstein, Daniel R.; Kuprat, Andrew P.; Jiao, Xiangmin; Carson, James P.; Einstein, David M.; Corley, Richard A.; Jacob, Rick E.

    2013-01-01

    Geometries for organ scale and multiscale simulations of organ function are now routinely derived from imaging data. However, medical images may also contain spatially heterogeneous information other than geometry that are relevant to such simulations either as initial conditions or in the form of model parameters. In this manuscript, we present an algorithm for the efficient and robust mapping of such data to imaging based unstructured polyhedral grids in parallel. We then illustrate the application of our mapping algorithm to three different mapping problems: 1) the mapping of MRI diffusion tensor data to an unstuctured ventricular grid; 2) the mapping of serial cyro-section histology data to an unstructured mouse brain grid; and 3) the mapping of CT-derived volumetric strain data to an unstructured multiscale lung grid. Execution times and parallel performance are reported for each case.

  10. System Considerations and Challendes in 3d Mapping and Modeling Using Low-Cost Uav Systems

    NASA Astrophysics Data System (ADS)

    Lari, Z.; El-Sheimy, N.

    2015-08-01

    In the last few years, low-cost UAV systems have been acknowledged as an affordable technology for geospatial data acquisition that can meet the needs of a variety of traditional and non-traditional mapping applications. In spite of its proven potential, UAV-based mapping is still lacking in terms of what is needed for it to become an acceptable mapping tool. In other words, a well-designed system architecture that considers payload restrictions as well as the specifications of the utilized direct geo-referencing component and the imaging systems in light of the required mapping accuracy and intended application is still required. Moreover, efficient data processing workflows, which are capable of delivering the mapping products with the specified quality while considering the synergistic characteristics of the sensors onboard, the wide range of potential users who might lack deep knowledge in mapping activities, and time constraints of emerging applications, are still needed to be adopted. Therefore, the introduced challenges by having low-cost imaging and georeferencing sensors onboard UAVs with limited payload capability, the necessity of efficient data processing techniques for delivering required products for intended applications, and the diversity of potential users with insufficient mapping-related expertise needs to be fully investigated and addressed by UAV-based mapping research efforts. This paper addresses these challenges and reviews system considerations, adaptive processing techniques, and quality assurance/quality control procedures for achievement of accurate mapping products from these systems.

  11. Improving GOOGLE'S Cartographer 3d Mapping by Continuous-Time Slam

    NASA Astrophysics Data System (ADS)

    Nüchter, A.; Bleier, M.; Schauer, J.; Janotta, P.

    2017-02-01

    This paper shows how to use the result of Google's SLAM solution, called Cartographer, to bootstrap our continuous-time SLAM algorithm. The presented approach optimizes the consistency of the global point cloud, and thus improves on Google's results. We use the algorithms and data from Google as input for our continuous-time SLAM software. We also successfully applied our software to a similar backpack system which delivers consistent 3D point clouds even in absence of an IMU.

  12. 3D perfusion mapping in the intact mouse heart after myocardial infarction using myocardial contrast echocardiography

    NASA Astrophysics Data System (ADS)

    Li, Yinbo; Yang, Zequan; French, Brent A.; Hossack, John A.

    2005-04-01

    An intact mouse model of surgically-induced myocardial infarction (MI) caused by permanent occlusion of the Left Anterior Descending (LAD) coronary artery was studied. Normal mice with no occlusion were also studied as controls. For each mouse, contrast enhanced ultrasound images of the heart were acquired in parallel cross-sections perpendicular to the sternum at millimeter increments. For accurate 3D reconstruction, ECG gating and a tri-axial adjustable micromanipulator were used for temporal and spatial registration. Ultrasound images at steady-state of blood refilling were color-coded in each slice to show relative perfusion. Myocardial perfusion defects and necrosis were also examined postmortem by staining with Phthalo blue and TTC red dyes. Good correlation (R>0.93) in perfused area size was observed between in vivo measurements and histological staining. A 3D multi-slice model and a 3D rendering of perfusion distribution were created and showed a promising match with postmortem results, lending further credence to its use as a more comprehensive and more reliable tool for in vivo assessment of myocardial perfusion than 2D tomographic analysis.

  13. Air Velocity Mapping of Environmental Test Chambers

    DTIC Science & Technology

    1989-07-01

    variable that must be measured for the evaluations of the air diffusion performance index (ADPI), or the thermal comfort indices such as predicted mean...altered. The impact of asymmetrical airflow patterns undoubtedly affect human thermal comfort votes. The standardized 6 technique described in this...report could be easily employed prior to or along with specific studies requiring precise air velocity data, and coupled with human thermal comfort surveys

  14. Radial Velocity Eclipse Mapping of Exoplanets

    NASA Astrophysics Data System (ADS)

    Nikolov, Nikolay; Sainsbury-Martinez, Felix

    2015-07-01

    Planetary rotation rates and obliquities provide information regarding the history of planet formation, but have not yet been measured for evolved extrasolar planets. Here we investigate the theoretical and observational perspective of the Rossiter-McLaughlin effect during secondary eclipse (RMse) ingress and egress for transiting exoplanets. Near secondary eclipse, when the planet passes behind the parent star, the star sequentially obscures light from the approaching and receding parts of the rotating planetary surface. The temporal block of light emerging from the approaching (blueshifted) or receding (redshifted) parts of the planet causes a temporal distortion in the planet’s spectral line profiles resulting in an anomaly in the planet’s radial velocity curve. We demonstrate that the shape and the ratio of the ingress-to-egress radial velocity amplitudes depends on the planetary rotational rate, axial tilt, and impact factor (i.e., sky-projected planet spin-orbital alignment). In addition, line asymmetries originating from different layers in the atmosphere of the planet could provide information regarding zonal atmospheric winds and constraints on the hot spot shape for giant irradiated exoplanets. The effect is expected to be most-pronounced at near-infrared wavelengths, where the planet-to-star contrasts are large. We create synthetic near-infrared, high-dispersion spectroscopic data and demonstrate how the sky-projected spin axis orientation and equatorial velocity of the planet can be estimated. We conclude that the RMse effect could be a powerful method to measure exoplanet spins.

  15. RADIAL VELOCITY ECLIPSE MAPPING OF EXOPLANETS

    SciTech Connect

    Nikolov, Nikolay; Sainsbury-Martinez, Felix

    2015-07-20

    Planetary rotation rates and obliquities provide information regarding the history of planet formation, but have not yet been measured for evolved extrasolar planets. Here we investigate the theoretical and observational perspective of the Rossiter–McLaughlin effect during secondary eclipse (RMse) ingress and egress for transiting exoplanets. Near secondary eclipse, when the planet passes behind the parent star, the star sequentially obscures light from the approaching and receding parts of the rotating planetary surface. The temporal block of light emerging from the approaching (blueshifted) or receding (redshifted) parts of the planet causes a temporal distortion in the planet’s spectral line profiles resulting in an anomaly in the planet’s radial velocity curve. We demonstrate that the shape and the ratio of the ingress-to-egress radial velocity amplitudes depends on the planetary rotational rate, axial tilt, and impact factor (i.e., sky-projected planet spin–orbital alignment). In addition, line asymmetries originating from different layers in the atmosphere of the planet could provide information regarding zonal atmospheric winds and constraints on the hot spot shape for giant irradiated exoplanets. The effect is expected to be most-pronounced at near-infrared wavelengths, where the planet-to-star contrasts are large. We create synthetic near-infrared, high-dispersion spectroscopic data and demonstrate how the sky-projected spin axis orientation and equatorial velocity of the planet can be estimated. We conclude that the RMse effect could be a powerful method to measure exoplanet spins.

  16. 5D Modelling: An Efficient Approach for Creating Spatiotemporal Predictive 3D Maps of Large-Scale Cultural Resources

    NASA Astrophysics Data System (ADS)

    Doulamis, A.; Doulamis, N.; Ioannidis, C.; Chrysouli, C.; Grammalidis, N.; Dimitropoulos, K.; Potsiou, C.; Stathopoulou, E.-K.; Ioannides, M.

    2015-08-01

    Outdoor large-scale cultural sites are mostly sensitive to environmental, natural and human made factors, implying an imminent need for a spatio-temporal assessment to identify regions of potential cultural interest (material degradation, structuring, conservation). On the other hand, in Cultural Heritage research quite different actors are involved (archaeologists, curators, conservators, simple users) each of diverse needs. All these statements advocate that a 5D modelling (3D geometry plus time plus levels of details) is ideally required for preservation and assessment of outdoor large scale cultural sites, which is currently implemented as a simple aggregation of 3D digital models at different time and levels of details. The main bottleneck of such an approach is its complexity, making 5D modelling impossible to be validated in real life conditions. In this paper, a cost effective and affordable framework for 5D modelling is proposed based on a spatial-temporal dependent aggregation of 3D digital models, by incorporating a predictive assessment procedure to indicate which regions (surfaces) of an object should be reconstructed at higher levels of details at next time instances and which at lower ones. In this way, dynamic change history maps are created, indicating spatial probabilities of regions needed further 3D modelling at forthcoming instances. Using these maps, predictive assessment can be made, that is, to localize surfaces within the objects where a high accuracy reconstruction process needs to be activated at the forthcoming time instances. The proposed 5D Digital Cultural Heritage Model (5D-DCHM) is implemented using open interoperable standards based on the CityGML framework, which also allows the description of additional semantic metadata information. Visualization aspects are also supported to allow easy manipulation, interaction and representation of the 5D-DCHM geometry and the respective semantic information. The open source 3DCity

  17. Comparative analysis of 3D expression patterns of transcription factor genes and digit fate maps in the developing chick wing.

    PubMed

    Fisher, Malcolm; Downie, Helen; Welten, Monique C M; Delgado, Irene; Bain, Andrew; Planzer, Thorsten; Sherman, Adrian; Sang, Helen; Tickle, Cheryll

    2011-04-22

    Hoxd13, Tbx2, Tbx3, Sall1 and Sall3 genes are candidates for encoding antero-posterior positional values in the developing chick wing and specifying digit identity. In order to build up a detailed profile of gene expression patterns in cell lineages that give rise to each of the digits over time, we compared 3 dimensional (3D) expression patterns of these genes during wing development and related them to digit fate maps. 3D gene expression data at stages 21, 24 and 27 spanning early bud to digital plate formation, captured from in situ hybridisation whole mounts using Optical Projection Tomography (OPT) were mapped to reference wing bud models. Grafts of wing bud tissue from GFP chicken embryos were used to fate map regions of the wing bud giving rise to each digit; 3D images of the grafts were captured using OPT and mapped on to the same models. Computational analysis of the combined computerised data revealed that Tbx2 and Tbx3 are expressed in digit 3 and 4 progenitors at all stages, consistent with encoding stable antero-posterior positional values established in the early bud; Hoxd13 and Sall1 expression is more dynamic, being associated with posterior digit 3 and 4 progenitors in the early bud but later becoming associated with anterior digit 2 progenitors in the digital plate. Sox9 expression in digit condensations lies within domains of digit progenitors defined by fate mapping; digit 3 condensations express Hoxd13 and Sall1, digit 4 condensations Hoxd13, Tbx3 and to a lesser extent Tbx2. Sall3 is only transiently expressed in digit 3 progenitors at stage 24 together with Sall1 and Hoxd13; then becomes excluded from the digital plate. These dynamic patterns of expression suggest that these genes may play different roles in digit identity either together or in combination at different stages including the digit condensation stage.

  18. Lessons in modern digital field geology: Open source software, 3D techniques, and the new world of digital mapping

    NASA Astrophysics Data System (ADS)

    Pavlis, Terry; Hurtado, Jose; Langford, Richard; Serpa, Laura

    2014-05-01

    Although many geologists refuse to admit it, it is time to put paper-based geologic mapping into the historical archives and move to the full potential of digital mapping techniques. For our group, flat map digital geologic mapping is now a routine operation in both research and instruction. Several software options are available, and basic proficiency with the software can be learned in a few hours of instruction and practice. The first practical field GIS software, ArcPad, remains a viable, stable option on Windows-based systems. However, the vendor seems to be moving away from ArcPad in favor of mobile software solutions that are difficult to implement without GIS specialists. Thus, we have pursued a second software option based on the open source program QGIS. Our QGIS system uses the same shapefile-centric data structure as our ArcPad system, including similar pop-up data entry forms and generic graphics for easy data management in the field. The advantage of QGIS is that the same software runs on virtually all common platforms except iOS, although the Android version remains unstable as of this writing. A third software option we are experimenting with for flat map-based field work is Fieldmove, a derivative of the 3D-capable program Move developed by Midland Valley. Our initial experiments with Fieldmove are positive, particularly with the new, inexpensive (<300Euros) Windows tablets. However, the lack of flexibility in data structure makes for cumbersome workflows when trying to interface our existing shapefile-centric data structures to Move. Nonetheless, in spring 2014 we will experiment with full-3D immersion in the field using the full Move software package in combination with ground based LiDAR and photogrammetry. One new workflow suggested by our initial experiments is that field geologists should consider using photogrammetry software to capture 3D visualizations of key outcrops. This process is now straightforward in several software packages, and

  19. Preliminary 3D seismic velocity model for the crustal structure of the southern part of the Korean Peninsula inferred from ambient noise tomography and waveform modeling

    NASA Astrophysics Data System (ADS)

    Rhie, J.; Kim, S.; Lee, S.

    2012-12-01

    We construct a preliminary 3D seismic velocity model for the crust beneath the southern part of the Korean Peninsula. Broadband waveforms obtained from seismic network in and around the study area are used. First, a quasi-3D S-wave model is estimated from Rayleigh wave tomography using ambient seismic noise. During the depth-inversion of dispersion curve for each inversion node, a Bayesian approach is used to introduce sharp boundaries and to provide a statistical assessment of inverted 1D Vsv models. Crustal thickness and average Vp/Vs ratio are constrained from the result of previous receiver function (RF) study. Then, Love wave dispersions are inverted for 1D Vsh models by allowing small velocity perturbations with respect to the previously defined 1D Vsv-wave models. Lastly, a series of forward 3D waveform modeling are performed based on the anisotropic S-wave model. The starting P-wave velocity model is determined by using Vp/Vs ratio from the RF study and an average model between Vsv and Vsh models. Values of Vp/Vs ratio, Vsv, Vsh, and crustal thickness are systematically varied during the forward modeling to fit observed three-component broadband (~0.05-0.3 Hz) waveforms. By doing this, we develop a preliminary 3D velocity model for the southern Korean Peninsula. Our model is a starting model of the realistic 3D model, which takes into account more data such as surface geological feature, high-frequency body wave travel times, and gravity. The final model will be used to predict strong g round motion of potential large scenario earthquakes after correcting site effects.

  20. A simple, fast, and repeatable survey method for underwater visual 3D benthic mapping and monitoring.

    PubMed

    Pizarro, Oscar; Friedman, Ariell; Bryson, Mitch; Williams, Stefan B; Madin, Joshua

    2017-03-01

    Visual 3D reconstruction techniques provide rich ecological and habitat structural information from underwater imagery. However, an unaided swimmer or diver struggles to navigate precisely over larger extents with consistent image overlap needed for visual reconstruction. While underwater robots have demonstrated systematic coverage of areas much larger than the footprint of a single image, access to suitable robotic systems is limited and requires specialized operators. Furthermore, robots are poor at navigating hydrodynamic habitats such as shallow coral reefs. We present a simple approach that constrains the motion of a swimmer using a line unwinding from a fixed central drum. The resulting motion is the involute of a circle, a spiral-like path with constant spacing between revolutions. We test this survey method at a broad range of habitats and hydrodynamic conditions encircling Lizard Island in the Great Barrier Reef, Australia. The approach generates fast, structured, repeatable, and large-extent surveys (~110 m(2) in 15 min) that can be performed with two people and are superior to the commonly used "mow the lawn" method. The amount of image overlap is a design parameter, allowing for surveys that can then be reliably used in an automated processing pipeline to generate 3D reconstructions, orthographically projected mosaics, and structural complexity indices. The individual images or full mosaics can also be labeled for benthic diversity and cover estimates. The survey method we present can serve as a standard approach to repeatedly collecting underwater imagery for high-resolution 2D mosaics and 3D reconstructions covering spatial extents much larger than a single image footprint without requiring sophisticated robotic systems or lengthy deployment of visual guides. As such, it opens up cost-effective novel observations to inform studies relating habitat structure to ecological processes and biodiversity at scales and spatial resolutions not readily

  1. Electromechanical wave imaging (EWI) validation in all four cardiac chambers with 3D electroanatomic mapping in canines in vivo

    NASA Astrophysics Data System (ADS)

    Costet, Alexandre; Wan, Elaine; Bunting, Ethan; Grondin, Julien; Garan, Hasan; Konofagou, Elisa

    2016-11-01

    Characterization and mapping of arrhythmias is currently performed through invasive insertion and manipulation of cardiac catheters. Electromechanical wave imaging (EWI) is a non-invasive ultrasound-based imaging technique, which tracks the electromechanical activation that immediately follows electrical activation. Electrical and electromechanical activations were previously found to be linearly correlated in the left ventricle, but the relationship has not yet been investigated in the three other chambers of the heart. The objective of this study was to investigate the relationship between electrical and electromechanical activations and validate EWI in all four chambers of the heart with conventional 3D electroanatomical mapping. Six (n  =  6) normal adult canines were used in this study. The electrical activation sequence was mapped in all four chambers of the heart, both endocardially and epicardially using the St Jude’s EnSite 3D mapping system (St. Jude Medical, Secaucus, NJ). EWI acquisitions were performed in all four chambers during normal sinus rhythm, and during pacing in the left ventricle. Isochrones of the electromechanical activation were generated from standard echocardiographic imaging views. Electrical and electromechanical activation maps were co-registered and compared, and electrical and electromechanical activation times were plotted against each other and linear regression was performed for each pair of activation maps. Electromechanical and electrical activations were found to be directly correlated with slopes of the correlation ranging from 0.77 to 1.83, electromechanical delays between 9 and 58 ms and R 2 values from 0.71 to 0.92. The linear correlation between electrical and electromechanical activations and the agreement between the activation maps indicate that the electromechanical activation follows the pattern of propagation of the electrical activation. This suggests that EWI may be used as a novel non-invasive method

  2. Interpretation and mapping of geological features using mobile devices for 3D outcrop modelling

    NASA Astrophysics Data System (ADS)

    Buckley, Simon J.; Kehl, Christian; Mullins, James R.; Howell, John A.

    2016-04-01

    Advances in 3D digital geometric characterisation have resulted in widespread adoption in recent years, with photorealistic models utilised for interpretation, quantitative and qualitative analysis, as well as education, in an increasingly diverse range of geoscience applications. Topographic models created using lidar and photogrammetry, optionally combined with imagery from sensors such as hyperspectral and thermal cameras, are now becoming commonplace in geoscientific research. Mobile devices (tablets and smartphones) are maturing rapidly to become powerful field computers capable of displaying and interpreting 3D models directly in the field. With increasingly high-quality digital image capture, combined with on-board sensor pose estimation, mobile devices are, in addition, a source of primary data, which can be employed to enhance existing geological models. Adding supplementary image textures and 2D annotations to photorealistic models is therefore a desirable next step to complement conventional field geoscience. This contribution reports on research into field-based interpretation and conceptual sketching on images and photorealistic models on mobile devices, motivated by the desire to utilise digital outcrop models to generate high quality training images (TIs) for multipoint statistics (MPS) property modelling. Representative training images define sedimentological concepts and spatial relationships between elements in the system, which are subsequently modelled using artificial learning to populate geocellular models. Photorealistic outcrop models are underused sources of quantitative and qualitative information for generating TIs, explored further in this research by linking field and office workflows through the mobile device. Existing textured models are loaded to the mobile device, allowing rendering in a 3D environment. Because interpretation in 2D is more familiar and comfortable for users, the developed application allows new images to be captured

  3. Visualization and mapping of neurosurgical functional brain data onto a 3-D MR-based model of the brain surface.

    PubMed

    Modayur, B R; Prothero, J; Rosse, C; Jakobovits, R; Brinkley, J F

    1996-01-01

    The Human Brain Project was initiated with the goal of developing methods for managing and sharing information about the brain. As a prototype Human Brain Project application we are developing a system for organizing, visualizing, integrating and sharing information about human language function. The goal of the brain mapping component of our work, described in this article, is to generate the 3D location and extent of cortical language sites with respect to a uniform, 3D patient coordinate system. The language sites of individual patients can then be combined with or related to other patient data in terms of a Talairach, surface-based, or other deformable coordinate systems. Language site mapping is done by visually comparing an intraoperative photograph with the rendered image (from MRI data). The techniques outlined in this article have been utilized to map cortical language sites of six patients. Preliminary results point to the adequacy of our volume visualizations for language mapping. The strength of the visualization scheme lies in the combination of interactive segmentation with volume and surface visualization. We are now in the process of acquiring more patient data to further validate the usefulness of our method.

  4. Improved 3D Look-Locker Acquisition Scheme and Angle Map Filtering Procedure for T1 Estimation

    PubMed Central

    Hui, CheukKai; Esparza-Coss, Emilio; Narayana, Ponnada A

    2013-01-01

    The 3D Look-Locker (LL) acquisition is a widely used fast and efficient T1 mapping method. However, the multi-shot approach of 3D LL acquisition can introduce reconstruction artifacts that result in intensity distortions. Traditional 3D LL acquisition generally utilizes centric encoding scheme that is limited to a single phase encoding direction in the k-space. To optimize the k-space segmentation, an elliptical scheme with two phase encoding directions is implemented for the LL acquisition. This elliptical segmentation can reduce the intensity errors in the reconstructed images and improve the final T1 estimation. One of the major sources of error in LL based T1 estimation is lack of accurate knowledge of the actual flip angle. Multi-parameter curve fitting procedure can account for some of the variability in the flip angle. However, curve fitting can also introduce errors in the estimated flip angle that can result in incorrect T1 values. A filtering procedure based on goodness of fit (GOF) is proposed to reduce the effect of false flip angle estimates. Filtering based on the GOF weighting can remove likely incorrect angles that result in bad curve fit. Simulation, phantom, and in-vivo studies have demonstrated that these techniques can improve the accuracy of 3D LL T1 estimation. PMID:23784967

  5. Ligand mapping on protein surfaces by the 3D-RISM theory: toward computational fragment-based drug design.

    PubMed

    Imai, Takashi; Oda, Koji; Kovalenko, Andriy; Hirata, Fumio; Kidera, Akinori

    2009-09-02

    In line with the recent development of fragment-based drug design, a new computational method for mapping of small ligand molecules on protein surfaces is proposed. The method uses three-dimensional (3D) spatial distribution functions of the atomic sites of the ligand calculated using the molecular theory of solvation, known as the 3D reference interaction site model (3D-RISM) theory, to identify the most probable binding modes of ligand molecules. The 3D-RISM-based method is applied to the binding of several small organic molecules to thermolysin, in order to show its efficiency and accuracy in detecting binding sites. The results demonstrate that our method can reproduce the major binding modes found by X-ray crystallographic studies with sufficient precision. Moreover, the method can successfully identify some binding modes associated with a known inhibitor, which could not be detected by X-ray analysis. The dependence of ligand-binding modes on the ligand concentration, which essentially cannot be treated with other existing computational methods, is also investigated. The results indicate that some binding modes are readily affected by the ligand concentration, whereas others are not significantly altered. In the former case, it is the subtle balance in the binding affinity between the ligand and water that determines the dominant ligand-binding mode.

  6. 3D mapping of geological contacts by coupling Aerial Laser Scanning, Gigapixel photography and open access pictures

    NASA Astrophysics Data System (ADS)

    Nguyen, Liliane; Guerin, Antoine; Abellán, Antonio; Carrea, Dario; Derron, Marc-Henri; Jaboyedoff, Michel

    2015-04-01

    Multiple sources of geological data exist nowadays, most of them are in 2D (e.g. geological maps, geological panoramic sketch), and only a few are in 3D (e.g. block diagram). One of the current challenges in geological mapping consists not only in providing a more consistent 3D data, but also in pursuing a gathering and a harmonisation of the geological information in order to obtain a more consistent interpretations of the 3D geological models. New remote sensing techniques have significantly improved the representation of three-dimensional surfaces during the last decade, especially for steep and inaccessible rockcliffs. Therefore, we present an exploratory study aiming to find a reliable method for carrying out a three-dimensional mapping of geological contacts using a High Resolution Digital Elevation Model (HRDEM) with a 1 meter cell size. To this end, we selected the "Scex Rouge Mountain" as pilot study area. This outcrop, which is located in the Diablerets Massif (Vaud, Swiss Alps), has the particularity to present very distinguishable folded geological boundaries on its Southern face. The Southern slope belongs to the Wildhorn nappe, which is mainly composed of sedimentary rocks. The top-layer is composed of siliceous limestones, the well-visible fold layer is the "Pygurus layer" and consist of sandy limestone. Finally the bottom-layer includes marly schist and clayey limestones. At first, different sources of information has been draped on the HRDEM of the Scex Rouge Mountain, including not only classical geological maps (1:25 000) but also different sources of imagery (e.g. gigapixel panoramas, open access images, etc.). In a second step, several three-dimensional polylines have been drawn following the geological limit on each drapped HRDEM. Then we investigated the accuracy of 2D classical geological maps by comparing these geological limits with the drawn 3D polylines. Furthermore, in order to evaluate the accuracy of the method, a ground truth needs

  7. In vivo MEMRI characterization of brain metastases using a 3D Look-Locker T1-mapping sequence

    PubMed Central

    Castets, Charles R.; Koonjoo, Néha; Hertanu, Andreea; Voisin, Pierre; Franconi, Jean-Michel; Miraux, Sylvain; Ribot, Emeline J.

    2016-01-01

    Although MEMRI (Manganese Enhanced MRI) informations were obtained on primary tumors in small animals, MEMRI data on metastases are lacking. Thus, our goal was to determine if 3D Look-Locker T1 mapping was an efficient method to evaluate Mn ions transport in brain metastases in vivo. The high spatial resolution in 3D (156 × 156 × 218 μm) of the sequence enabled to detect metastases of 0.3 mm3. In parallel, the T1 quantitation enabled to distinguish three populations of MDA-MB-231 derived brain metastases after MnCl2 intravenous injection: one with a healthy blood-tumor barrier that did not internalize Mn2+ ions, and two others, which T1 shortened drastically by 54.2% or 24%. Subsequent scans of the mice, enabled by the fast acquisition (23 min), demonstrated that these T1 reached back their pre-injection values in 24 h. Contrarily to metastases, the T1 of U87-MG glioma remained 26.2% shorter for one week. In vitro results supported the involvement of the Transient Receptor Potential channels and the Calcium-Sensing Receptor in the uptake and efflux of Mn2+ ions, respectively. This study highlights the ability of the 3D Look-Locker T1 mapping sequence to study heterogeneities (i) amongst brain metastases and (ii) between metastases and glioma regarding Mn transport. PMID:27995976

  8. GPU-based rapid reconstruction of cellular 3D refractive index maps from tomographic phase microscopy (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Dardikman, Gili; Shaked, Natan T.

    2016-03-01

    We present highly parallel and efficient algorithms for real-time reconstruction of the quantitative three-dimensional (3-D) refractive-index maps of biological cells without labeling, as obtained from the interferometric projections acquired by tomographic phase microscopy (TPM). The new algorithms are implemented on the graphic processing unit (GPU) of the computer using CUDA programming environment. The reconstruction process includes two main parts. First, we used parallel complex wave-front reconstruction of the TPM-based interferometric projections acquired at various angles. The complex wave front reconstructions are done on the GPU in parallel, while minimizing the calculation time of the Fourier transforms and phase unwrapping needed. Next, we implemented on the GPU in parallel the 3-D refractive index map retrieval using the TPM filtered-back projection algorithm. The incorporation of algorithms that are inherently parallel with a programming environment such as Nvidia's CUDA makes it possible to obtain real-time processing rate, and enables high-throughput platform for label-free, 3-D cell visualization and diagnosis.

  9. 3D-Pharmacophore mapping of thymidine-based inhibitors of TMPK as potential antituberculosis agents

    NASA Astrophysics Data System (ADS)

    Andrade, Carolina Horta; Pasqualoto, Kerly F. M.; Ferreira, Elizabeth I.; Hopfinger, Anton J.

    2010-02-01

    Tuberculosis (TB) is the primary cause of mortality among infectious diseases. Mycobacterium tuberculosis monophosphate kinase (TMPKmt) is essential to DNA replication. Thus, this enzyme represents a promising target for developing new drugs against TB. In the present study, the receptor-independent, RI, 4D-QSAR method has been used to develop QSAR models and corresponding 3D-pharmacophores for a set of 81 thymidine analogues, and two corresponding subsets, reported as inhibitors of TMPKmt . The resulting optimized models are not only statistically significant with r 2 ranging from 0.83 to 0.92 and q 2 from 0.78 to 0.88, but also are robustly predictive based on test set predictions. The most and the least potent inhibitors in their respective postulated active conformations, derived from each of the models, were docked in the active site of the TMPKmt crystal structure. There is a solid consistency between the 3D-pharmacophore sites defined by the QSAR models and interactions with binding site residues. Moreover, the QSAR models provide insights regarding a probable mechanism of action of the analogues.

  10. 3D map distribution of metallic nanoparticles in whole cells using MeV ion microscopy.

    PubMed

    Vasco, M S; Alves, L C; Corregidor, V; Correia, D; Godinho, C P; Sá-Correia, I; Bettiol, A; Watt, F; Pinheiro, T

    2017-08-01

    In this work, a new tool was developed, the MORIA program that readily translates Rutherford backscattering spectrometry (RBS) output data into visual information, creating a display of the distribution of elements in a true three-dimensional (3D) environment. The program methodology is illustrated with the analysis of yeast Saccharomyces cerevisiae cells, exposed to copper oxide nanoparticles (CuO-NP) and HeLa cells in the presence of gold nanoparticles (Au-NP), using different beam species, energies and nuclear microscopy systems. Results demonstrate that for both cell types, the NP internalization can be clearly perceived. The 3D models of the distribution of CuO-NP in S. cerevisiae cells indicate the nonuniform distribution of NP in the cellular environment and a relevant confinement of CuO-NP to the cell wall. This suggests the impenetrability of certain cellular organelles or compartments for NP. By contrast, using a high-resolution ion beam system, discretized agglomerates of Au-NP were visualized inside the HeLa cell. This is consistent with the mechanism of entry of these NPs in the cellular space by endocytosis enclosed in endosomal vesicles. This approach shows RBS to be a powerful imaging technique assigning to nuclear microscopy unparalleled potential to assess nanoparticle distribution inside the cellular volume. © 2017 The Authors Journal of Microscopy © 2017 Royal Microscopical Society.

  11. CheS-Mapper - Chemical Space Mapping and Visualization in 3D

    PubMed Central

    2012-01-01

    Analyzing chemical datasets is a challenging task for scientific researchers in the field of chemoinformatics. It is important, yet difficult to understand the relationship between the structure of chemical compounds, their physico-chemical properties, and biological or toxic effects. To that respect, visualization tools can help to better comprehend the underlying correlations. Our recently developed 3D molecular viewer CheS-Mapper (Chemical Space Mapper) divides large datasets into clusters of similar compounds and consequently arranges them in 3D space, such that their spatial proximity reflects their similarity. The user can indirectly determine similarity, by selecting which features to employ in the process. The tool can use and calculate different kind of features, like structural fragments as well as quantitative chemical descriptors. These features can be highlighted within CheS-Mapper, which aids the chemist to better understand patterns and regularities and relate the observations to established scientific knowledge. As a final function, the tool can also be used to select and export specific subsets of a given dataset for further analysis. PMID:22424447

  12. Mapping of the C3d receptor (CR2)-binding site and a neoantigenic site in the C3d domain of the third component of complement.

    PubMed Central

    Lambris, J D; Ganu, V S; Hirani, S; Müller-Eberhard, H J

    1985-01-01

    The C3d domain of C3 contains the site that binds to the C3d receptor (CR2) which is expressed on B lymphocytes. It also contains a neoantigenic determinant that is recognized by monoclonal antibody (mAb) 130 and is expressed when C3b is cleaved to iC3b and subsequently to C3dg or C3d. mAb 130 inhibits the binding of C3d to CR2. In this study, the locations of the CR2-binding site and of the neoantigen recognized by mAb 130 within the C3d domain were investigated. Treatment of human C3d with CNBr generated two major fragments with Mrs of 12,500 and 8600. Binding studies showed that only the Mr 8600 fragment was capable of binding to both CR2 and mAb 130. Amino-terminal sequence analysis of the Mr 8600 fragment and comparison with the amino acid sequence derived from human C3 cDNA [de Bruijn, M. H. L. & Fey, G. H. (1985) Proc. Natl. Acad. Sci. USA 82, 708-712] placed it between residues 1199 and 1274 of the C3 sequence. Several peptides were synthesized according to the derived C3 sequence of amino acid residues 1209-1236. Based on their differential binding to CR2 and mAb 130, we localized the CR2-binding site and mAb 130 neoantigenic site, respectively, to residues 1227-1232 and 1217-1232 of the C3 sequence. PMID:2408276

  13. In-situ biofouling assessment in spacer filled channels using optical coherence tomography (OCT): 3D biofilm thickness mapping.

    PubMed

    Fortunato, Luca; Leiknes, TorOve

    2017-04-01

    Membrane systems for water purification can be seriously hampered by biofouling. The use of optical coherence tomography (OCT) to investigate biofilms in membrane systems has recently increased due to the ability to do the characterization in-situ and non-destructively. The OCT biofilm thickness map is presented for the first time as a tool to assess biofilm spatial distribution on a surface. The map allows the visualization and evaluation of the biofilm formation and growth in membrane filtration systems through the use of a false color scale. The biofilm development was monitored with OCT to evaluate the suitability of the proposed approach. A 3D time series analysis of biofilm development in a spacer filled channel representative of a spiral-wound membrane element was performed. The biofilm thickness map enables the time-resolved and spatial-resolved evaluation and visualization of the biofilm deposition pattern in-situ non-destructively.

  14. Mapping snow avalanche risk using GIS technique and 3D modeling in Ceahlau Mountain

    NASA Astrophysics Data System (ADS)

    Covasnianu, A.; Grigoras, I. R.; State, L. E.; Balin, D.; Hogas, S.; Balin, I.

    2009-04-01

    This study consisted in a precise mapping project (GPS field campaign and on-screen digitization of the topographic maps at 1:5.000 scale) of the Ceahlau mountain area in Romanian Carpathians in order to address the snow avalanche risk management, surveying and monitoring. Thus we considered the slope, aspect, altitude, landforms and roughness derived from a high resolute numerical terrain model (31 km2 at 1: 5.000 scale resulted in a spatial resolution of 3 m by the help of Topo to Raster tool). These parameters were classified according to a model applied into Tatra Mountains and used over Ceahlau Massive. The results were adapted and interpreted considering to the European Avalanche Hazard Scale. This work was made in the context of the elaboration of Risk Map and is directly concerning both the security of tourism activities but also the management of the Natural Park Ceahlau. The extension of this method to similar mountain areas is ongoing.

  15. EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy

    SciTech Connect

    Barad, Benjamin A.; Echols, Nathaniel; Wang, Ray Yu-Ruei; Cheng, Yifan; DiMaio, Frank; Adams, Paul D.; Fraser, James S.

    2015-08-17

    Advances in high-resolution cryo-electron microscopy (cryo-EM) require the development of validation metrics to independently assess map quality and model geometry. We report that EMRinger is a tool that assesses the precise fitting of an atomic model into the map during refinement and shows how radiation damage alters scattering from negatively charged amino acids. EMRinger (https://github.com/fraser-lab/EMRinger) will be useful for monitoring progress in resolving and modeling high-resolution features in cryo-EM.

  16. VizieR Online Data Catalog: 3D extinction map of northern Galactic plane (Sale+, 2014)

    NASA Astrophysics Data System (ADS)

    Sale, S. E.; Drew, J. E.; Barentsen, G.; Farnhill, H. J.; Raddi, R.; Barlow, M. J.; Eisloffel, J.; Vink, J. S.; Rodriguez-Gil, P.; Wright, N. J.

    2014-06-01

    We present a three dimensional map of extinction in the Northern Galactic Plane derived using photometry from the IPHAS survey. We construct the map using a method based on a hierarchical Bayesian model as previously described by Sale (2012MNRAS.427.2119S). In addition to mean extinction, we also measure differential extinction, which arises from the fractal nature of the ISM. The method applied also furnishes us with photometric estimates of the distance, extinction, effective temperature, surface gravity, and mass for ~38 million stars. Further details about the data as well as additional formats and data products are available via http://www.iphas.org/extinction. (2 data files).

  17. A 3D dust map from Pan-STARRS 1 photometry

    NASA Astrophysics Data System (ADS)

    Green, Gregory M.

    We have constructed a three-dimensional map of dust in the Milky Way, tracing reddening on ˜ 7' scales out to a distance of several kiloparsecs. We trace reddening using stars embedded in the dust, by simultaneously inferring stellar distance, stellar type, and the reddening along the line of sight. We use 5-band grizy Pan-STARRS 1 photometry of 800 million stars, augmented by 3-band 2MASS JHKs photometry when available. The full map is available at http://argonaut.skymaps.info. An online version of this talk is available at http://http://greg.ory.gr/present/ewass2015.

  18. EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy

    DOE PAGES

    Barad, Benjamin A.; Echols, Nathaniel; Wang, Ray Yu-Ruei; ...

    2015-08-17

    Advances in high-resolution cryo-electron microscopy (cryo-EM) require the development of validation metrics to independently assess map quality and model geometry. We report that EMRinger is a tool that assesses the precise fitting of an atomic model into the map during refinement and shows how radiation damage alters scattering from negatively charged amino acids. EMRinger (https://github.com/fraser-lab/EMRinger) will be useful for monitoring progress in resolving and modeling high-resolution features in cryo-EM.

  19. A search for Ganymede stereo images and 3D mapping opportunities

    NASA Astrophysics Data System (ADS)

    Zubarev, A.; Nadezhdina, I.; Brusnikin, E.; Giese, B.; Oberst, J.

    2017-10-01

    We used 126 Voyager-1 and -2 as well as 87 Galileo images of Ganymede and searched for stereo images suitable for digital 3D stereo analysis. Specifically, we consider image resolutions, stereo angles, as well as matching illumination conditions of respective stereo pairs. Lists of regions and local areas with stereo coverage are compiled. We present anaglyphs and we selected areas, not previously discussed, for which we constructed Digital Elevation Models and associated visualizations. The terrain characteristics in the models are in agreement with our previous notion of Ganymede morphology, represented by families of lineaments and craters of various sizes and degradation stages. The identified areas of stereo coverage may serve as important reference targets for the Ganymede Laser Altimeter (GALA) experiment on the future JUICE (Jupiter Icy Moons Explorer) mission.

  20. Evaluating the Potential of Rtk-Uav for Automatic Point Cloud Generation in 3d Rapid Mapping

    NASA Astrophysics Data System (ADS)

    Fazeli, H.; Samadzadegan, F.; Dadrasjavan, F.

    2016-06-01

    During disaster and emergency situations, 3D geospatial data can provide essential information for decision support systems. The utilization of geospatial data using digital surface models as a basic reference is mandatory to provide accurate quick emergency response in so called rapid mapping activities. The recipe between accuracy requirements and time restriction is considered critical in this situations. UAVs as alternative platforms for 3D point cloud acquisition offer potentials because of their flexibility and practicability combined with low cost implementations. Moreover, the high resolution data collected from UAV platforms have the capabilities to provide a quick overview of the disaster area. The target of this paper is to experiment and to evaluate a low-cost system for generation of point clouds using imagery collected from a low altitude small autonomous UAV equipped with customized single frequency RTK module. The customized multi-rotor platform is used in this study. Moreover, electronic hardware is used to simplify user interaction with the UAV as RTK-GPS/Camera synchronization, and beside the synchronization, lever arm calibration is done. The platform is equipped with a Sony NEX-5N, 16.1-megapixel camera as imaging sensor. The lens attached to camera is ZEISS optics, prime lens with F1.8 maximum aperture and 24 mm focal length to deliver outstanding images. All necessary calibrations are performed and flight is implemented over the area of interest at flight height of 120 m above the ground level resulted in 2.38 cm GSD. Earlier to image acquisition, 12 signalized GCPs and 20 check points were distributed in the study area and measured with dualfrequency GPS via RTK technique with horizontal accuracy of σ = 1.5 cm and vertical accuracy of σ = 2.3 cm. results of direct georeferencing are compared to these points and experimental results show that decimeter accuracy level for 3D points cloud with proposed system is achievable, that is suitable

  1. Large Deformation Diffeomorphic Metric Mapping Registration of Reconstructed 3D Histological Section Images and in vivo MR Images

    PubMed Central

    Ceritoglu, Can; Wang, Lei; Selemon, Lynn D.; Csernansky, John G.; Miller, Michael I.; Ratnanather, J. Tilak

    2009-01-01

    Our current understanding of neuroanatomical abnormalities in neuropsychiatric diseases is based largely on magnetic resonance imaging (MRI) and post mortem histological analyses of the brain. Further advances in elucidating altered brain structure in these human conditions might emerge from combining MRI and histological methods. We propose a multistage method for registering 3D volumes reconstructed from histological sections to corresponding in vivo MRI volumes from the same subjects: (1) manual segmentation of white matter (WM), gray matter (GM) and cerebrospinal fluid (CSF) compartments in histological sections, (2) alignment of consecutive histological sections using 2D rigid transformation to construct a 3D histological image volume from the aligned sections, (3) registration of reconstructed 3D histological volumes to the corresponding 3D MRI volumes using 3D affine transformation, (4) intensity normalization of images via histogram matching, and (5) registration of the volumes via intensity based large deformation diffeomorphic metric (LDDMM) image matching algorithm. Here we demonstrate the utility of our method in the transfer of cytoarchitectonic information from histological sections to identify regions of interest in MRI scans of nine adult macaque brains for morphometric analyses. LDDMM improved the accuracy of the registration via decreased distances between GM/CSF surfaces after LDDMM (0.39 ± 0.13 mm) compared to distances after affine registration (0.76 ± 0.41 mm). Similarly, WM/GM distances decreased to 0.28 ± 0.16 mm after LDDMM compared to 0.54 ± 0.39 mm after affine registration. The multistage registration method may find broad application for mapping histologically based information, for example, receptor distributions, gene expression, onto MRI volumes. PMID:20577633

  2. Mapping of the spontaneous deletion in the Ap3d1 gene of mocha mice: fast and reliable genotyping

    PubMed Central

    Drasbek, Kim Ryun; Holm, Mai Marie; Delenclos, Marion; Jensen, Kimmo

    2008-01-01

    Background The mocha mouse carries a spontaneous deletion in the Ap3d1 gene, encoding the delta 1 subunit of the adaptor related protein complex 3, (Ap3d1), and subsequently lack the expression of functional AP-3. This leads to a deficiency in vesicle transport and storage, which affects neurotransmitter vesicle turnover and release in the central nervous system. Since the genomic sequence of the Ap3d1 gene of mocha mouse is not known, precise mapping of the deletion as well as reliable genotyping protocols are lacking. Findings We sequenced the Ap3d1 gene (HGNC GeneID: 8943) around the deletion site in the mocha mouse and revealed a 10639 bp deletion covering exon 2 to 6. Subsequently, new PCR primers were designed yielding a reliable genotyping protocol of both newborn and adult tissue. To examine the genotypes further, hippocampal neurons were cultured from mocha and control mice. Patch-clamp recordings showed that mocha neurons had a higher input resistance, and that autaptic EPSC in mocha cultures depressed faster and stronger as compared with control cultures. Conclusion Our study reports the sequence of the deleted part of the Ap3d1 gene in mocha mice, as well as a reliable PCR-based genotyping protocol. We cultured hippocampal neurons from control and mocha mice, and found a difference in input resistance of the neurons, and in the synaptic short-term plasticity of glutamatergic autapses showing a larger synaptic depression than controls. The described procedures may be useful for the future utilization of the mocha mouse as a model of defective vesicle biogenesis. Importantly, as genotyping by eye color is complicated in newborn mice, the designed protocol is so fast and reliable that newborn mice could rapidly be genotyped and hippocampal neurons dissociated and cultured, which is normally best done at P0-P2. PMID:19032734

  3. Error Estimation And Accurate Mapping Based ALE Formulation For 3D Simulation Of Friction Stir Welding

    NASA Astrophysics Data System (ADS)

    Guerdoux, Simon; Fourment, Lionel

    2007-05-01

    An Arbitrary Lagrangian Eulerian (ALE) formulation is developed to simulate the different stages of the Friction Stir Welding (FSW) process with the FORGE3® F.E. software. A splitting method is utilized: a) the material velocity/pressure and temperature fields are calculated, b) the mesh velocity is derived from the domain boundary evolution and an adaptive refinement criterion provided by error estimation, c) P1 and P0 variables are remapped. Different velocity computation and remap techniques have been investigated, providing significant improvement with respect to more standard approaches. The proposed ALE formulation is applied to FSW simulation. Steady state welding, but also transient phases are simulated, showing good robustness and accuracy of the developed formulation. Friction parameters are identified for an Eulerian steady state simulation by comparison with experimental results. Void formation can be simulated. Simulations of the transient plunge and welding phases help to better understand the deposition process that occurs at the trailing edge of the probe. Flexibility and robustness of the model finally allows investigating the influence of new tooling designs on the deposition process.

  4. Learning Benefits of Using 2D versus 3D Maps: Evidence from a Randomized Controlled Experiment

    ERIC Educational Resources Information Center

    Niedomysl, Thomas; Ellder, Erik; Larsson, Anders; Thelin, Mikael; Jansund, Bodil

    2013-01-01

    The traditional important role of maps used for educational purposes has gained further potential with recent advances in GIS technology. But beyond specific courses in cartography this potential seems little realized in geography teaching. This article investigates the extent to which any learning benefits may be derived from the use of such…

  5. 3-D Mind Maps: Placing Young Children in the Centre of Their Own Learning

    ERIC Educational Resources Information Center

    Howitt, Christine

    2009-01-01

    Three-dimensional mind maps are a highly effective tool for providing engaging, kinaesthetic and sensory experiences for young children, with real objects used to promote the sharing of knowledge and the creation of connections. The use of real objects allows children the opportunity to connect with those objects at a personal level, thus placing…

  6. Hard Copy to Digital Transfer: 3D Models that Match 2D Maps

    ERIC Educational Resources Information Center

    Kellie, Andrew C.

    2011-01-01

    This research describes technical drawing techniques applied in a project involving digitizing of existing hard copy subsurface mapping for the preparation of three dimensional graphic and mathematical models. The intent of this research was to identify work flows that would support the project, ensure the accuracy of the digital data obtained,…

  7. GPR Detection and 3D Mapping of Lateral Macropores II. Riparian Application

    USDA-ARS?s Scientific Manuscript database

    The morphology and prevalence of 1-10 cm diameter macropores in forested riparian wetland buffers is largely unknown despite their importance as a source of preferential nutrient delivery to stream channels. Here, we validated in situ procedures for detecting and mapping the three-dimensional struct...

  8. Learning Benefits of Using 2D versus 3D Maps: Evidence from a Randomized Controlled Experiment

    ERIC Educational Resources Information Center

    Niedomysl, Thomas; Ellder, Erik; Larsson, Anders; Thelin, Mikael; Jansund, Bodil

    2013-01-01

    The traditional important role of maps used for educational purposes has gained further potential with recent advances in GIS technology. But beyond specific courses in cartography this potential seems little realized in geography teaching. This article investigates the extent to which any learning benefits may be derived from the use of such…

  9. Hard Copy to Digital Transfer: 3D Models that Match 2D Maps

    ERIC Educational Resources Information Center

    Kellie, Andrew C.

    2011-01-01

    This research describes technical drawing techniques applied in a project involving digitizing of existing hard copy subsurface mapping for the preparation of three dimensional graphic and mathematical models. The intent of this research was to identify work flows that would support the project, ensure the accuracy of the digital data obtained,…

  10. Assessment of earthquake locations in 3-D deterministic velocity models: A case study from the Altotiberina Near Fault Observatory (Italy)

    NASA Astrophysics Data System (ADS)

    Latorre, D.; Mirabella, F.; Chiaraluce, L.; Trippetta, F.; Lomax, A.

    2016-11-01

    The accuracy of earthquake locations and their correspondence with subsurface geology depends strongly on the accuracy of the available seismic velocity model. Most modern methods to construct a velocity model for earthquake location are based on the inversion of passive source seismological data. Another approach is the integration of high-resolution geological and geophysical data to construct deterministic velocity models in which earthquake locations can be directly correlated to the geological structures. Such models have to be kinematically consistent with independent seismological data in order to provide precise hypocenter solutions. We present the Altotiberina (AT) seismic model, a three-dimensional velocity model for the Upper Tiber Valley region (Northern Apennines, Italy), constructed by combining 300 km of seismic reflection profiles, six deep boreholes (down to 5 km depth), detailed data from geological surveys and direct measurements of P and S wave velocities performed in situ and in laboratory. We assess the robustness of the AT seismic model by locating 11,713 earthquakes with a nonlinear, global-search inversion method and comparing the probabilistic hypocenter solutions to those calculated in three previously published velocity models, constructed by inverting passive seismological data only. Our results demonstrate that the AT seismic model is able to provide higher-quality hypocenter locations than the previous velocity models. Earthquake locations are consistent with the subsurface geological structures and show a high degree of spatial correlation with specific lithostratigraphic units, suggesting a lithological control on the seismic activity evolution.

  11. Symmetry-plane model of 3D Euler flows: Mapping to regular systems and numerical solutions of blowup

    NASA Astrophysics Data System (ADS)

    Mulungye, Rachel M.; Lucas, Dan; Bustamante, Miguel D.

    2014-11-01

    We introduce a family of 2D models describing the dynamics on the so-called symmetry plane of the full 3D Euler fluid equations. These models depend on a free real parameter and can be solved analytically. For selected representative values of the free parameter, we apply the method introduced in [M.D. Bustamante, Physica D: Nonlinear Phenom. 240, 1092 (2011)] to map the fluid equations bijectively to globally regular systems. By comparing the analytical solutions with the results of numerical simulations, we establish that the numerical simulations of the mapped regular systems are far more accurate than the numerical simulations of the original systems, at the same spatial resolution and CPU time. In particular, the numerical integrations of the mapped regular systems produce robust estimates for the growth exponent and singularity time of the main blowup quantity (vorticity stretching rate), converging well to the analytically-predicted values even beyond the time at which the flow becomes under-resolved (i.e. the reliability time). In contrast, direct numerical integrations of the original systems develop unstable oscillations near the reliability time. We discuss the reasons for this improvement in accuracy, and explain how to extend the analysis to the full 3D case. Supported under the programme for Research in Third Level Institutions (PRTLI) Cycle 5 and co-funded by the European Regional Development Fund.

  12. A Global 3D P-Velocity Model of the Earth’s Crust and Mantle for Improved Event Location

    DTIC Science & Technology

    2011-09-01

    matrix ( Hipp et al., 2011, these Proceedings) and applied the resolution matrix for a coarse grid to drive the grid refinement steps. By using the...Explosion Monitoring Technologies 247 REFERENCES Ballard, S., J. R. Hipp , and C. J. Young (2009) . Efficient and accurate calculation of ray theory...Rowe, C., S. Ballard, M. Begnaud, C. Young, L. Steck, and J. Hipp (2009). Validating 3D geophysical models for use in global travel-time

  13. Mapping tropical biodiversity using spectroscopic imagery : characterization of structural and chemical diversity with 3-D radiative transfer modeling

    NASA Astrophysics Data System (ADS)

    Feret, J. B.; Gastellu-Etchegorry, J. P.; Lefèvre-Fonollosa, M. J.; Proisy, C.; Asner, G. P.

    2014-12-01

    The accelerating loss of biodiversity is a major environmental trend. Tropical ecosystems are particularly threatened due to climate change, invasive species, farming and natural resources exploitation. Recent advances in remote sensing of biodiversity confirmed the potential of high spatial resolution spectroscopic imagery for species identification and biodiversity mapping. Such information bridges the scale-gap between small-scale, highly detailed field studies and large-scale, low-resolution satellite observations. In order to produce fine-scale resolution maps of canopy alpha-diversity and beta-diversity of the Peruvian Amazonian forest, we designed, applied and validated a method based on spectral variation hypothesis to CAO AToMS (Carnegie Airborne Observatory Airborne Taxonomic Mapping System) images, acquired from 2011 to 2013. There is a need to understand on a quantitative basis the physical processes leading to this spectral variability. This spectral variability mainly depends on canopy chemistry, structure, and sensor's characteristics. 3D radiative transfer modeling provides a powerful framework for the study of the relative influence of each of these factors in dense and complex canopies. We simulated series of spectroscopic images with the 3D radiative model DART, with variability gradients in terms of leaf chemistry, individual tree structure, spatial and spectral resolution, and applied methods for biodiversity mapping. This sensitivity study allowed us to determine the relative influence of these factors on the radiometric signal acquired by different types of sensors. Such study is particularly important to define the domain of validity of our approach, to refine requirements for the instrumental specifications, and to help preparing hyperspectral spatial missions to be launched at the horizon 2015-2025 (EnMAP, PRISMA, HISUI, SHALOM, HYSPIRI, HYPXIM). Simulations in preparation include topographic variations in order to estimate the robustness

  14. Real-time Process Monitoring and Temperature Mapping of the 3D Polymer Printing Process

    SciTech Connect

    Dinwiddie, Ralph Barton; Love, Lonnie J; Rowe, John C

    2013-01-01

    An extended range IR camera was used to make temperature measurements of samples as they are being manufactured. The objective is to quantify the temperature variation inside the system as parts are being fabricated, as well as quantify the temperature of a part during fabrication. The IR camera was used to map the temperature within the build volume of the oven and surface temperature measurement of a part as it was being manufactured. The development of the temperature map of the oven provides insight into the global temperature variation within the oven that may lead to understanding variations in the properties of parts as a function of location. The observation of the temperature variation of a part that fails during construction provides insight into how the deposition process itself impacts temperature distribution within a single part leading to failure.

  15. Hypocenter relocation of microseismic events using a 3-D velocity model of the shale-gas production site in the Horn River Basin

    NASA Astrophysics Data System (ADS)

    Woo, J. U.; Kim, J. H.; Rhie, J.; Kang, T. S.

    2016-12-01

    Microseismic monitoring is a crucial process to evaluate the efficiency of hydro-fracking and to understand the development of fracture networks. Consequently, it can provide valuable information for designing the post hydro-fracking stages and estimating the stimulated rock volumes. The fundamental information is a set of source parameters of microseismic events. The most important parameter is the hypocenter of event, and thus the accurate hypocenter determination is a key for the successful microseismic monitoring. The accuracy of hypocenters for a given dataset of seismic phase arrival times is dependent on that of the velocity model used in the seismic analysis. In this study, we evaluated how a 3-D model can affect the accuracy of hypocenters. We used auto-picked P- and S-wave travel-time data of about 8,000 events at the commercial shale gas production site in the Horn River Basin, Canada. The initial hypocenters of the events were determined using a single-difference linear inversion algorithm with a 1-D velocity model obtained from the well-logging data. Then we iteratively inverted travel times of events for the 3-D velocity perturbations and relocated their hypocenters using double-difference algorithm. Significant reduction of the errors in the final hypocenter was obtained. This result indicates that the 3-D model is useful for improving the performance of microseismic monitoring.

  16. Reconstruction of Sub-Surface Velocities from Satellite Observations Using Iterative Self-Organizing Maps

    NASA Astrophysics Data System (ADS)

    Chapman, Christopher; Charantonis, Anastase

    2017-04-01

    A new method based on modified self-organizing maps is presented for the reconstruction of deep ocean current velocities from surface information provided by satellites. This method takes advantage of local correlations in the data-space to improve the accuracy of the reconstructed deep velocities. No assumptions regarding the structure of the water column, nor the underlying dynamics of the flow field, are made. Using satellite observations of surface velocity, sea-surface height and sea-surface temperature, as well as observations of the deep current velocity from autonomous Argo floats to train the map, we are able to reconstruct realistic high-resolution velocity fields at a depth of 1000m. Validation reveals promising results, with a speed root mean squared error of approximately 2.8cm/s, more than a factor of two smaller than competing methods, and direction errors consistently smaller than 30 degrees. The shortcomings of this method will be discussed, as well as recent work to extend the method to produce a fully 3D reconstruction of the interior temperature and velocity fields.

  17. Whole-brain 3D mapping of human neural transplant innervation

    PubMed Central

    Doerr, Jonas; Schwarz, Martin Karl; Wiedermann, Dirk; Leinhaas, Anke; Jakobs, Alina; Schloen, Florian; Schwarz, Inna; Diedenhofen, Michael; Braun, Nils Christian; Koch, Philipp; Peterson, Daniel A.; Kubitscheck, Ulrich; Hoehn, Mathias; Brüstle, Oliver

    2017-01-01

    While transplantation represents a key tool for assessing in vivo functionality of neural stem cells and their suitability for neural repair, little is known about the integration of grafted neurons into the host brain circuitry. Rabies virus-based retrograde tracing has developed into a powerful approach for visualizing synaptically connected neurons. Here, we combine this technique with light sheet fluorescence microscopy (LSFM) to visualize transplanted cells and connected host neurons in whole-mouse brain preparations. Combined with co-registration of high-precision three-dimensional magnetic resonance imaging (3D MRI) reference data sets, this approach enables precise anatomical allocation of the host input neurons. Our data show that the same neural donor cell population grafted into different brain regions receives highly orthotopic input. These findings indicate that transplant connectivity is largely dictated by the circuitry of the target region and depict rabies-based transsynaptic tracing and LSFM as efficient tools for comprehensive assessment of host–donor cell innervation. PMID:28102196

  18. Dynamic 3-D chemical agent cloud mapping using a sensor constellation deployed on mobile platforms

    NASA Astrophysics Data System (ADS)

    Cosofret, Bogdan R.; Konno, Daisei; Rossi, David; Marinelli, William J.; Seem, Pete

    2014-05-01

    The need for standoff detection technology to provide early Chem-Bio (CB) threat warning is well documented. Much of the information obtained by a single passive sensor is limited to bearing and angular extent of the threat cloud. In order to obtain absolute geo-location, range to threat, 3-D extent and detailed composition of the chemical threat, fusion of information from multiple passive sensors is needed. A capability that provides on-the-move chemical cloud characterization is key to the development of real-time Battlespace Awareness. We have developed, implemented and tested algorithms and hardware to perform the fusion of information obtained from two mobile LWIR passive hyperspectral sensors. The implementation of the capability is driven by current Nuclear, Biological and Chemical Reconnaissance Vehicle operational tactics and represents a mission focused alternative of the already demonstrated 5-sensor static Range Test Validation System (RTVS).1 The new capability consists of hardware for sensor pointing and attitude information which is made available for streaming and aggregation as part of the data fusion process for threat characterization. Cloud information is generated using 2-sensor data ingested into a suite of triangulation and tomographic reconstruction algorithms. The approaches are amenable to using a limited number of viewing projections and unfavorable sensor geometries resulting from mobile operation. In this paper we describe the system architecture and present an analysis of results obtained during the initial testing of the system at Dugway Proving Ground during BioWeek 2013.

  19. Maps of clouds modeled with the IPSL Titan 3D-GCM

    NASA Astrophysics Data System (ADS)

    Burgalat, J.; Rannou, P.; Lebonnois, S.

    2011-10-01

    A new climate model for Titan's atmosphere has been developed at the IPSL. This model uses the current version of the LMDZ General Circulation Model (GCM) dynamical core with the physics part of the 2D Titan's IPSL-GCM. First simulations made at the LMD (Laboratoire de Météorologie Dynamique) used a version of the model with coupled haze microphysics only. We update the model with the implementation of the clouds microphysics scheme inherited frome the previous 2D version. The model is now fully coupled with clouds processes and is a full 3D extension of the Titan IPSL-GCM ([2], [3]). Currently the model is not optimized and is demanding in term of computational time (approximatively 17 days of execution for one Titan's year simulation) and the model can not be used with its full capacities. Therefore all the microphysics is still computed as zonal averages. Nevertheless, new simulations performed including clouds, shows some encouraging results. The lack of asymmetry of the clouds coverage in the results of the 2D simulations. seems to vanish using the new model which tends to show that dissipation process in the 2D model was too strong. With this new model, we intented to get a better tool to understand Titan's climate and to interpret the large amount of data collected by the probes.

  20. Maps of clouds modeled with the IPSL Titan 3D