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Sample records for aberration corrected transmission

  1. Nanowire growth kinetics in aberration corrected environmental transmission electron microscopy.

    PubMed

    Chou, Yi-Chia; Panciera, Federico; Reuter, Mark C; Stach, Eric A; Ross, Frances M

    2016-04-14

    We visualize atomic level dynamics during Si nanowire growth using aberration corrected environmental transmission electron microscopy, and compare with lower pressure results from ultra-high vacuum microscopy. We discuss the importance of higher pressure observations for understanding growth mechanisms and describe protocols to minimize effects of the higher pressure background gas. PMID:27041654

  2. Image transfer with spatial coherence for aberration corrected transmission electron microscopes.

    PubMed

    Hosokawa, Fumio; Sawada, Hidetaka; Shinkawa, Takao; Sannomiya, Takumi

    2016-08-01

    The formula of spatial coherence involving an aberration up to six-fold astigmatism is derived for aberration-corrected transmission electron microscopy. Transfer functions for linear imaging are calculated using the newly derived formula with several residual aberrations. Depending on the symmetry and origin of an aberration, the calculated transfer function shows characteristic symmetries. The aberrations that originate from the field's components, having uniformity along the z direction, namely, the n-fold astigmatism, show rotational symmetric damping of the coherence. The aberrations that originate from the field's derivatives with respect to z, such as coma, star, and three lobe, show non-rotational symmetric damping. It is confirmed that the odd-symmetric wave aberrations have influences on the attenuation of an image via spatial coherence. Examples of image simulations of haemoglobin and Si [211] are shown by using the spatial coherence for an aberration-corrected electron microscope. PMID:27155359

  3. Transmissive liquid-crystal device correcting primary coma aberration and astigmatism in laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Tanabe, Ayano; Hibi, Terumasa; Ipponjima, Sari; Matsumoto, Kenji; Yokoyama, Masafumi; Kurihara, Makoto; Hashimoto, Nobuyuki; Nemoto, Tomomi

    2016-03-01

    Laser scanning microscopy allows 3D cross-sectional imaging inside biospecimens. However, certain aberrations produced can degrade the quality of the resulting images. We previously reported a transmissive liquid-crystal device that could compensate for the predominant spherical aberrations during the observations, particularly in deep regions of the samples. The device, inserted between the objective lens and the microscope revolver, improved the image quality of fixed-mouse-brain slices that were observed using two-photon excitation laser scanning microscopy, which was originally degraded by spherical aberration. In this study, we developed a transmissive device that corrects primary coma aberration and astigmatism, motivated by the fact that these asymmetric aberrations can also often considerably deteriorate image quality, even near the sample surface. The device's performance was evaluated by observing fluorescent beads using single-photon excitation laser scanning microscopy. The fluorescence intensity in the image of the bead under a cover slip tilted in the y-direction was increased by 1.5 times after correction by the device. Furthermore, the y- and z-widths of the imaged bead were reduced to 66% and 65%, respectively. On the other hand, for the imaged bead sucked into a glass capillary in the longitudinal x-direction, correction with the device increased the fluorescence intensity by 2.2 times compared to that of the aberrated image. In addition, the x-, y-, and z-widths of the bead image were reduced to 75%, 53%, and 40%, respectively. Our device successfully corrected several asymmetric aberrations to improve the fluorescent signal and spatial resolution, and might be useful for observing various biospecimens.

  4. Depth Sectioning with the Aberration-Corrected Scanning Transmission Electron Microscope

    SciTech Connect

    Borisevich, Albina Y; Lupini, Andrew R; Pennycook, Stephen J

    2006-01-01

    The ability to correct the aberrations of the probe-forming lens in the scanning transmission electron microscope provides not only a significant improvement in transverse resolution but in addition brings depth resolution at the nanometer scale. Aberration correction therefore opens up the possibility of 3D imaging by optical sectioning. Here we develop a definition for the depth resolution for scanning transmission electron microscope depth sectioning and present initial results from this method. Objects such as catalytic metal clusters and single atoms on various support materials are imaged in three dimensions with a resolution of several nanometers. Effective focal depth is determined by statistical analysis and the contributing factors are discussed. Finally, current challenges and future capabilities available through new instruments are discussed.

  5. Materials Characterization in the Aberration-Corrected Scanning Transmission Electron Microscope

    SciTech Connect

    Varela del Arco, Maria; Lupini, Andrew R; van Benthem, Klaus; Borisevich, Albina Y; Chisholm, Matthew F; Shibata, Naoya; Abe, E.; Pennycook, Stephen J

    2005-01-01

    In the nanoscience era, the properties of many exciting new materials and devices will depend on the details of their composition down to the level of single atoms. Thus the characterization of the structure and electronic properties of matter at the atomic scale is becoming ever more vital for economic and technological as well as for scientific reasons. The combination of atomic-resolution Z-contrast scanning transmission electron microscopy (STEM) and electron energy loss spectroscopy (EELS) represents a powerful method to link the atomic and electronic structure to macroscopic properties, allowing materials, nanoscale systems, and interfaces to be probed in unprecedented detail. Z-contrast STEM uses electrons that have been scattered to large angles for imaging. The relative intensity of each atomic column is roughly proportional to Z{sup 2}, where Z is the atomic number. Recent developments in correcting the aberrations of the lenses in the electron microscope have pushed the achievable spatial resolution and the sensitivity for imaging and spectroscopy in the STEM into the sub-Angstrom (sub-{angstrom}) regime, providing a new level of insight into the structure/property relations of complex materials. Images acquired with an aberration-corrected instrument show greatly improved contrast. The signal-to-noise ratio is sufficiently high to allow sensitivity even to single atoms in both imaging and spectroscopy. This is a key achievement because the detection and measurement of the response of individual atoms has become a challenging issue to provide new insight into many fields, such as catalysis, ceramic materials, complex oxide interfaces, or grain boundaries. In this article, the state-of-the-art for the characterization of all of these different types of materials by means of aberration-corrected STEM and EELS are reviewed.

  6. Bright-field imaging of compound semiconductors using aberration-corrected scanning transmission electron microscopy

    NASA Astrophysics Data System (ADS)

    Aoki, Toshihiro; Lu, Jing; McCartney, Martha R.; Smith, David J.

    2016-09-01

    This study reports the observation of six different zincblende compound semiconductors in [110] projection using large-collection-angle bright-field (LABF) imaging with an aberration-corrected scanning transmission electron microscope. Phase contrast is completely suppressed when the collection semi-angle is set equal to the convergence semi-angle and there are no reversals in image contrast with changes in defocus or thickness. The optimum focus for imaging closely separated pairs of atomic columns (‘dumbbells’) is unique and easily recognized, and the positions of atomic columns occupied by heavier atoms always have darker intensity than those occupied by lighter atoms. Thus, the crystal polarity of compound semiconductors can be determined unambiguously. Moreover, it is concluded that the LABF imaging mode will be highly beneficial for studying other more complicated heterostructures at the atomic scale.

  7. Identification of light elements in silicon nitride by aberration-corrected scanning transmission electron microscopy.

    PubMed

    Idrobo, Juan C; Walkosz, Weronika; Klie, Robert F; Oğüt, Serdar

    2012-12-01

    In silicon nitride structural ceramics, the overall mechanical and thermal properties are controlled by the atomic and electronic structures at the interface between the ceramic grains and the amorphous intergranular films (IGFs) formed by various sintering additives. In the last ten years the atomic arrangements of heavy elements (rare-earths) at the Si(3)N(4)/IGF interfaces have been resolved. However, the atomic position of light elements, without which it is not possible to obtain a complete description of the interfaces, has been lacking. This review article details the authors' efforts to identify the atomic arrangement of light elements such as nitrogen and oxygen at the Si(3)N(4)/SiO(2) interface and in bulk Si(3)N(4) using aberration-corrected scanning transmission electron microscopy. PMID:22726263

  8. Observations of Carbon Nanotube Oxidation in an Aberration-Corrected, Environmental Transmission Electron Microscope

    PubMed Central

    Koh, Ai Leen; Gidcumb, Emily; Zhou, Otto; Sinclair, Robert

    2013-01-01

    We report the first direct study on the oxidation of carbon nanotubes at the resolution of an aberration-corrected environmental transmission electron microscope (ETEM), as we locate and identify changes in the same nanotubes as they undergo oxidation at increasing temperatures in-situ in the ETEM. Contrary to earlier reports that CNT oxidation initiates at the end of the tube and proceeds along its length, our findings show that only the outside graphene layer is being removed and on occasion, the interior inner wall is oxidized, presumably due to oxygen infiltrating into the hollow nanotube through an open end or breaks in the tube. We believe that this work provides the foundation for much scientific understanding of the mechanism underlying the nanotube oxidation process, as well as guidelines to manipulate their structure or prevent their oxidation. PMID:23360330

  9. Sub-Angstrom Low Voltage Performance of a Monochromated, Aberration-Corrected Transmission Electron Microscope

    PubMed Central

    Bell, David C.; Russo, Christopher J.; Benner, Gerd

    2011-01-01

    Lowering the electron energy in the transmission electron microscope allows for a significant improvement in contrast of light elements, and reduces knock-on damage for most materials. If low-voltage electron microscopes are defined as those with accelerating voltages below 100 kV, the introduction of aberration correctors and monochromators to the electron microscope column enables Ångstrom-level resolution, which was previously reserved for higher voltage instruments. Decreasing electron energy has three important advantages: 1) knock-on damage is lower, which is critically important for sensitive materials such as graphene and carbon nanotubes; 2) cross sections for electron-energy-loss spectroscopy increase, improving signal-to-noise for chemical analysis; 3) elastic scattering cross sections increase, improving contrast in high-resolution, zero-loss images. The results presented indicate that decreasing the acceleration voltage from 200 kV to 80 kV in a monochromated, aberration-corrected microscope enhances the contrast while retaining sub-angstrom resolution. These improvements in low-voltage performance are expected to produce many new results and enable a wealth of new experiments in materials science. PMID:20598206

  10. The first observation of titanate nanotubes by spherical aberration corrected high-resolution transmission electron microscopy

    NASA Astrophysics Data System (ADS)

    Miao, L.; Tanemura, S.; Jiang, T.; Tanemura, M.; Yoshida, K.; Tanaka, N.; Xu, G.

    2009-07-01

    Multi-wall titanate nanotubes (MW-TNNTs) with high aspect ratio, large surface area and good uniformity were produced by alkaline hydrothermal treatment of grounded TiO 2 aerogels and further by applying freeze-drying. Not only the crystal phase and diameter, but also morphology of the starting materials impact on the aspect ratio and transformation efficiency of the obtained nanotubes. Other parameters, such as pH value during neutralization process and drying method for the final products, are important to control length and dispersion of MW-TNNTs. By spherical aberration corrected high-resolution transmission-electron-microscopy (Cs-corrected HRTEM) with lateral space resolution of 0.14 nm at 200 kV accelerating voltage and electron energy loss spectrum (EELS), the detailed structural analysis of MW-TNNTs reveals that (1) diameters of inner and outer tubes are about 4-7 nm and 10 nm, respectively, (2) numbers of layers are different from part to part along the longitudinal tube axis, (3) the walls of the tubes have interlayer spacing of 0.70-0.80 nm and the lateral fringes which are vertical to the walls have spacing of 0.32 nm, (4) each layer of MW-TNNT is the nanosheet composed by the arrayed TiO 6 octahedrons, and respective octahedron being slightly strained, and (5) no chirality of MW-TNNT tubular structure is observed.

  11. Aberration Corrected Scanning Transmission Electron Microscopy of (Ca , Sr)Fe2O5 Brownmillerite superlattices

    NASA Astrophysics Data System (ADS)

    Mukherjee, Debangshu; Stone, Greg; Moon, Eun Ju; Young, Joshua; Gopalan, Venkatraman; Rondinelli, James; May, Steven; Alem, Nasim

    The brownmillerite phase A2B2O5 consists of ordered oxygen vacancies in alternate perovskite layers forming chiral tetrahedral chains. The handedness of these tetrahedral chains control the polarization of the structure. The current study focuses on 1-1 brownmillerite superlattices grown on a SrTiO3 substrates using molecular beam epitaxy. The B-site in this structure is iron throughout the superlattice film, while the A-site alternates between calcium and strontium in the superlattice layers. In this study, we use atomic resolution aberration corrected scanning transmission electron microscopy (STEM) to investigate the structure and chemistry of the film-substrate interface as well as the chemical structure of the superlattice. Atom positions are determined to measure displacement vectors of A-site cations in the superlattice structure. D.M., G.A.S., V.G. and N.A. were supported by the National Science Foundation under Grant No. DMR-1420620. E.J.M. and S.J.M. were supported by the National Science Foundation under Grant No. DMR-1151649.

  12. The Aberration Corrected SEM

    SciTech Connect

    Joy, David C.

    2005-09-09

    The performance of the conventional low-energy CD-SEM is limited by the aberrations inherent in the probe forming lens. Multi-pole correctors are now available which can reduce or eliminate these aberrations. An SEM equipped with such a corrector offers higher spatial resolution and more probe current from a given electron source, and other aspects of the optical performance are also improved, but the much higher numerical aperture associated with an aberration corrected lens results in a reduction in imaging depth of field.

  13. Aberration corrected 1.2-MV cold field-emission transmission electron microscope with a sub-50-pm resolution

    SciTech Connect

    Akashi, Tetsuya; Takahashi, Yoshio; Tanigaki, Toshiaki Shimakura, Tomokazu; Kawasaki, Takeshi; Furutsu, Tadao; Shinada, Hiroyuki; Osakabe, Nobuyuki; Müller, Heiko; Haider, Maximilian; Tonomura, Akira

    2015-02-16

    Atomic-resolution electromagnetic field observation is critical to the development of advanced materials and to the unveiling of their fundamental physics. For this purpose, a spherical-aberration corrected 1.2-MV cold field-emission transmission electron microscope has been developed. The microscope has the following superior properties: stabilized accelerating voltage, minimized electrical and mechanical fluctuation, and coherent electron emission. These properties have enabled to obtain 43-pm information transfer. On the bases of these performances, a 43-pm resolution has been obtained by correcting lens aberrations up to the third order. Observations of GaN [411] thin crystal showed a projected atomic locations with a separation of 44 pm.

  14. Direct imaging of light elements by annular dark-field aberration-corrected scanning transmission electron microscopy

    SciTech Connect

    Lotnyk, Andriy Poppitz, David; Gerlach, Jürgen W.; Rauschenbach, Bernd

    2014-02-17

    In this report, we show that an annular dark-field detector in an aberration-corrected scanning transmission electron microscope allows the direct observation of light element columns in crystalline lattices. At specific imaging conditions, an enhancement of the intensities of light element columns in the presence of heavy element columns is observed. Experimental results are presented for imaging the nitrogen and carbon atomic columns at the GaN-SiC interface and within the GaN and SiC compounds. The crystal polarity of GaN at the interface is identified. The obtained findings are discussed and are well supported by image simulations.

  15. Aberration-corrected scanning transmission electron microscopy for complex transition metal oxides

    NASA Astrophysics Data System (ADS)

    Qing-Hua, Zhang; Dong-Dong, Xiao; Lin, Gu

    2016-06-01

    Lattice, charge, orbital, and spin are the four fundamental degrees of freedom in condensed matter, of which the interactive coupling derives tremendous novel physical phenomena, such as high-temperature superconductivity (high-T c SC) and colossal magnetoresistance (CMR) in strongly correlated electronic system. Direct experimental observation of these freedoms is essential to understanding the structure-property relationship and the physics behind it, and also indispensable for designing new materials and devices. Scanning transmission electron microscopy (STEM) integrating multiple techniques of structure imaging and spectrum analysis, is a comprehensive platform for providing structural, chemical and electronic information of materials with a high spatial resolution. Benefiting from the development of aberration correctors, STEM has taken a big breakthrough towards sub-angstrom resolution in last decade and always steps forward to improve the capability of material characterization; many improvements have been achieved in recent years, thereby giving an in-depth insight into material research. Here, we present a brief review of the recent advances of STEM by some representative examples of perovskite transition metal oxides; atomic-scale mapping of ferroelectric polarization, octahedral distortions and rotations, valence state, coordination and spin ordering are presented. We expect that this brief introduction about the current capability of STEM could facilitate the understanding of the relationship between functional properties and these fundamental degrees of freedom in complex oxides. Project supported by the National Key Basic Research Project, China (Grant No. 2014CB921002), the Strategic Priority Research Program of Chinese Academy of Sciences (Grant No. XDB07030200), and the National Natural Science Foundation of China (Grant Nos. 51522212 and 51421002).

  16. Controlled polarity of sputter-deposited aluminum nitride on metals observed by aberration corrected scanning transmission electron microscopy

    SciTech Connect

    Harumoto, T.; Sannomiya, T.; Matsukawa, Y.; Muraishi, S.; Shi, J.; Nakamura, Y.; Sawada, H.; Tanaka, T.; Tanishiro, Y.; Takayanagi, K.

    2013-02-28

    The polarity determination process of sputter-deposited aluminum nitride (AlN) on metals has been analyzed using aberration corrected atomic resolution scanning transmission electron microscope. Direct growth of c-axis orientated AlN on face centered cubic metals (fcc) (111) with the local epitaxy has been observed, and the polarity was determined at the AlN/metal interface. We found that the AlN polarity can be controlled by the base metal layer: N-polarity AlN grows on Pt(111) while Al-polarity AlN forms on Al(111). Based on these results, the growth mechanism of AlN on metals is discussed.

  17. The Stanford Nanocharacterization Laboratory (SNL) and Recent Applications of an Aberration-Corrected Environmental Transmission Electron Microscope**

    PubMed Central

    Sinclair, Robert; Kempen, Paul Joseph; Chin, Richard; Koh, Ai Leen

    2014-01-01

    This article describes the establishment, over a period of ten years or so, of a multi-user, institution-wide facility for the characterization of materials and devices at the nano-scale. Emphasis is placed on the type of equipment that we have found to be most useful for our users, and the business strategy that maintains its operations. A central component of our facility is an aberration-corrected environmental transmission electron microscope and its application is summarized in the studies of plasmon energies of silver nanoparticles, the band gap of PbS quantum dots, atomic site occupancy near grain boundaries in yttria stabilized zirconia, the lithiation of silicon nanoparticles, in situ observations on carbon nanotube oxidation and the electron tomography of varicella zoster virus nucleocapsids. PMID:25364299

  18. In situ observation on hydrogenation of Mg-Ni films using environmental transmission electron microscope with aberration correction

    SciTech Connect

    Matsuda, Junko; Yoshida, Kenta; Sasaki, Yukichi; Uchiyama, Naoki; Akiba, Etsuo

    2014-08-25

    In situ transmission electron microscopy (TEM) was performed to observe the hydrogenation of Mg-Ni films in a hydrogen atmosphere of 80–100 Pa. An aberration-corrected environmental TEM with a differential pumping system allows us to reveal the Angstrom-scale structure of the films in the initial stage of hydrogenation: first, nucleation and growth of Mg{sub 2}NiH{sub 4} crystals with a lattice spacing of 0.22 nm in an Mg-rich amorphous matrix of the film occurs within 20 s after the start of the high-resolution observation, then crystallization of MgH{sub 2} with a smaller spacing of 0.15 nm happens after approximately 1 min. Our in situ TEM method is also applicable to the analysis of other hydrogen-related materials.

  19. Correcting spherical aberrations in a biospecimen using a transmissive liquid crystal device in two-photon excitation laser scanning microscopy.

    PubMed

    Tanabe, Ayano; Hibi, Terumasa; Ipponjima, Sari; Matsumoto, Kenji; Yokoyama, Masafumi; Kurihara, Makoto; Hashimoto, Nobuyuki; Nemoto, Tomomi

    2015-10-01

    Two-photon excitation laser scanning microscopy has enabled the visualization of deep regions in a biospecimen. However, refractive-index mismatches in the optical path cause spherical aberrations that degrade spatial resolution and the fluorescence signal, especially during observation at deeper regions. Recently, we developed transmissive liquid-crystal devices for correcting spherical aberration without changing the basic design of the optical path in a conventional laser scanning microscope. In this study, the device was inserted in front of the objective lens and supplied with the appropriate voltage according to the observation depth. First, we evaluated the device by observing fluorescent beads in single- and two-photon excitation laser scanning microscopes. Using a 25× water-immersion objective lens with a numerical aperture of 1.1 and a sample with a refractive index of 1.38, the device recovered the spatial resolution and the fluorescence signal degraded within a depth of 0.6 mm. Finally, we implemented the device for observation of a mouse brain slice in a two-photon excitation laser scanning microscope. An optical clearing reagent with a refractive index of 1.42 rendered the fixed mouse brain transparent. The device improved the spatial resolution and the yellow fluorescent protein signal within a depth of 0-0.54 mm. PMID:26244766

  20. Correcting spherical aberrations in a biospecimen using a transmissive liquid crystal device in two-photon excitation laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Tanabe, Ayano; Hibi, Terumasa; Ipponjima, Sari; Matsumoto, Kenji; Yokoyama, Masafumi; Kurihara, Makoto; Hashimoto, Nobuyuki; Nemoto, Tomomi

    2015-10-01

    Two-photon excitation laser scanning microscopy has enabled the visualization of deep regions in a biospecimen. However, refractive-index mismatches in the optical path cause spherical aberrations that degrade spatial resolution and the fluorescence signal, especially during observation at deeper regions. Recently, we developed transmissive liquid-crystal devices for correcting spherical aberration without changing the basic design of the optical path in a conventional laser scanning microscope. In this study, the device was inserted in front of the objective lens and supplied with the appropriate voltage according to the observation depth. First, we evaluated the device by observing fluorescent beads in single- and two-photon excitation laser scanning microscopes. Using a 25× water-immersion objective lens with a numerical aperture of 1.1 and a sample with a refractive index of 1.38, the device recovered the spatial resolution and the fluorescence signal degraded within a depth of ±0.6 mm. Finally, we implemented the device for observation of a mouse brain slice in a two-photon excitation laser scanning microscope. An optical clearing reagent with a refractive index of 1.42 rendered the fixed mouse brain transparent. The device improved the spatial resolution and the yellow fluorescent protein signal within a depth of 0-0.54 mm.

  1. Aberration correction of unstable resonators

    NASA Technical Reports Server (NTRS)

    Lang, Robert J. (Inventor)

    1994-01-01

    Construction of aspheric reflectors for unstable resonator lasers to provide an arbitrary laser mode inside the resonator to correct aberrations of an output beam by the construction of the shape of an end reflector opposite the output reflector of the resonator cavity, such as aberrations resulting from refraction of a beam exiting the solid of the resonator having an index of refraction greater than 1 or to produce an aberration in the output beam that will precisely compensate for the aberration of an optical train into which the resonator beam is coupled.

  2. Separating strain from composition in unit cell parameter maps obtained from aberration corrected high resolution transmission electron microscopy imaging

    SciTech Connect

    Schulz, T.; Remmele, T.; Korytov, M.; Markurt, T.; Albrecht, M.; Duff, A.; Lymperakis, L.; Neugebauer, J.; Chèze, C.

    2014-01-21

    Based on the evaluation of lattice parameter maps in aberration corrected high resolution transmission electron microscopy images, we propose a simple method that allows quantifying the composition and disorder of a semiconductor alloy at the unit cell scale with high accuracy. This is realized by considering, next to the out-of-plane, also the in-plane lattice parameter component allowing to separate the chemical composition from the strain field. Considering only the out-of-plane lattice parameter component not only yields large deviations from the true local alloy content but also carries the risk of identifying false ordering phenomena like formations of chains or platelets. Our method is demonstrated on image simulations of relaxed supercells, as well as on experimental images of an In{sub 0.20}Ga{sub 0.80}N quantum well. Principally, our approach is applicable to all epitaxially strained compounds in the form of quantum wells, free standing islands, quantum dots, or wires.

  3. Nanoscale Energy-Filtered Scanning Confocal Electron Microscopy Using a Double-Aberration-Corrected Transmission Electron Microscope

    SciTech Connect

    Wang Peng; Behan, Gavin; Kirkland, Angus I.; Nellist, Peter D.; Takeguchi, Masaki; Hashimoto, Ayako; Mitsuishi, Kazutaka; Shimojo, Masayuki

    2010-05-21

    We demonstrate that a transmission electron microscope fitted with two spherical-aberration correctors can be operated as an energy-filtered scanning confocal electron microscope. A method for establishing this mode is described and initial results showing 3D chemical mapping with nanoscale sensitivity to height and thickness changes in a carbon film are presented. Importantly, uncorrected chromatic aberration does not limit the depth resolution of this technique and moreover performs an energy-filtering role, which is explained in terms of a combined depth and energy-loss response function.

  4. Historical aspects of aberration correction.

    PubMed

    Rose, Harald H

    2009-06-01

    A brief history of the development of direct aberration correction in electron microscopy is outlined starting from the famous Scherzer theorem established in 1936. Aberration correction is the long story of many seemingly fruitless efforts to improve the resolution of electron microscopes by compensating for the unavoidable resolution-limiting aberrations of round electron lenses over a period of 50 years. The successful breakthrough, in 1997, can be considered as a quantum step in electron microscopy because it provides genuine atomic resolution approaching the size of the radius of the hydrogen atom. The additional realization of monochromators, aberration-free imaging energy filters and spectrometers has been leading to a new generation of analytical electron microscopes providing elemental and electronic information about the object on an atomic scale. PMID:19254915

  5. Correction of Distributed Optical Aberrations

    SciTech Connect

    Baker, K; Olivier, S; Carrano, C; Phillion, D

    2006-02-12

    The objective of this project was to demonstrate the use of multiple distributed deformable mirrors (DMs) to improve the performance of optical systems with distributed aberrations. This concept is expected to provide dramatic improvement in the optical performance of systems in applications where the aberrations are distributed along the optical path or within the instrument itself. Our approach used multiple actuated DMs distributed to match the aberration distribution. The project developed the algorithms necessary to determine the required corrections and simulate the performance of these multiple DM systems.

  6. In-situ Study of Dynamic Phenomena at Metal Nanosolder Interfaces Using Aberration Corrected Scanning Transmission Electron Microcopy.

    SciTech Connect

    Lu, Ping

    2014-10-01

    Controlling metallic nanoparticle (NP) interactions plays a vital role in the development of new joining techniques (nanosolder) that bond at lower processing temperatures but remain viable at higher temperatures. The pr imary objective of this project is t o develop a fundamental understanding of the actual reaction processes, associated atomic mechanisms, and the resulting microstructure that occur during thermally - driven bond formation concerning metal - metal nano - scale (%3C50nm) interfaces. In this LDRD pr oject, we have studied metallic NPs interaction at the elevated temperatures by combining in - situ transmission electron microscopy (TEM ) using an aberration - corrected scanning transmission electron microscope (AC - STEM) and atomic - scale modeling such as m olecular dynamic (MD) simulations. Various metallic NPs such as Ag, Cu and Au are synthesized by chemical routines. Numerous in - situ e xperiments were carried out with focus of the research on study of Ag - Cu system. For the first time, using in - situ STEM he ating experiments , we directly observed t he formation of a 3 - dimensional (3 - D) epitaxial Cu - Ag core - shell nanoparticle during the thermal interaction of Cu and Ag NPs at elevated temperatures (150 - 300 o C). The reaction takes place at temperatures as low as 150 o C and was only observed when care was taken to circumvent the effects of electron beam irradiation during STEM imaging. Atomic - scale modeling verified that the Cu - Ag core - shell structure is energetically favored, and indicated that this phenomenon is a nano - scale effect related to the large surface - to - volume ratio of the NPs. The observation potentially can be used for developing new nanosolder technology that uses Ag shell as the "glue" that stic ks the particles of Cu together. The LDRD has led to several journal publications and numerous conference presentations, and a TA. In addition, we have developed new TEM characterization techniques and phase

  7. Morphological evolution of InAs/InP quantum wires through aberration-corrected scanning transmission electron microscopy.

    PubMed

    Sales, D L; Varela, M; Pennycook, S J; Galindo, P L; González, L; González, Y; Fuster, D; Molina, S I

    2010-08-13

    Evolution of the size, shape and composition of self-assembled InAs/InP quantum wires through the Stranski-Krastanov transition has been determined by aberration-corrected Z-contrast imaging. High resolution compositional maps of the wires in the initial, intermediate and final formation stages are presented. (001) is the main facet at their very initial stage of formation, which is gradually reduced in favour of [114] or [118], ending with the formation of mature quantum wires with {114} facets. Significant changes in wire dimensions are measured when varying slightly the amount of InAs deposited. These results are used as input parameters to build three-dimensional models that allow calculation of the strain energy during the quantum wire formation process. The observed morphological evolution is explained in terms of the calculated elastic energy changes at the growth front. Regions of the wetting layer close to the nanostructure perimeters have higher strain energy, causing migration of As atoms towards the quantum wire terraces, where the structure is partially relaxed; the thickness of the wetting layer is reduced in these zones and the island height increases until the (001) facet is removed. PMID:20647625

  8. Phase and birefringence aberration correction

    DOEpatents

    Bowers, M.; Hankla, A.

    1996-07-09

    A Brillouin enhanced four wave mixing phase conjugate mirror corrects phase aberrations of a coherent electromagnetic beam and birefringence induced upon that beam. The stimulated Brillouin scattering (SBS) phase conjugation technique is augmented to include Brillouin enhanced four wave mixing (BEFWM). A seed beam is generated by a main oscillator which arrives at the phase conjugate cell before the signal beams in order to initiate the Brillouin effect. The signal beam which is being amplified through the amplifier chain is split into two perpendicularly polarized beams. One of the two beams is chosen to be the same polarization as some component of the seed beam, the other orthogonal to the first. The polarization of the orthogonal beam is then rotated 90{degree} such that it is parallel to the other signal beam. The three beams are then focused into cell containing a medium capable of Brillouin excitation. The two signal beams are focused such that they cross the seed beam path before their respective beam waists in order to achieve BEFWM or the two signal beams are focused to a point or points contained within the focused cone angle of the seed beam to achieve seeded SBS, and thus negate the effects of all birefringent and material aberrations in the system. 5 figs.

  9. Phase and birefringence aberration correction

    DOEpatents

    Bowers, Mark; Hankla, Allen

    1996-01-01

    A Brillouin enhanced four wave mixing phase conjugate mirror corrects phase aberrations of a coherent electromagnetic beam and birefringence induced upon that beam. The stimulated Brillouin scattering (SBS) phase conjugation technique is augmented to include Brillouin enhanced four wave mixing (BEFWM). A seed beam is generated by a main oscillator which arrives at the phase conjugate cell before the signal beams in order to initiate the Brillouin effect. The signal beam which is being amplified through the amplifier chain is split into two perpendicularly polarized beams. One of the two beams is chosen to be the same polarization as some component of the seed beam, the other orthogonal to the first. The polarization of the orthogonal beam is then rotated 90.degree. such that it is parallel to the other signal beam. The three beams are then focused into cell containing a medium capable of Brillouin excitation. The two signal beams are focused such that they cross the seed beam path before their respective beam waists in order to achieve BEFWM or the two signal beams are focused to a point or points contained within the focused cone angle of the seed beam to achieve seeded SBS, and thus negate the effects of all birefringent and material aberrations in the system.

  10. Aberration correction past and present.

    PubMed

    Hawkes, P W

    2009-09-28

    Electron lenses are extremely poor: if glass lenses were as bad, we should see as well with the naked eye as with a microscope! The demonstration by Otto Scherzer in 1936 that skillful lens design could never eliminate the spherical and chromatic aberrations of rotationally symmetric electron lenses was therefore most unwelcome and the other great electron optician of those years, Walter Glaser, never ceased striving to find a loophole in Scherzer's proof. In the wartime and early post-war years, the first proposals for correcting C(s) were made and in 1947, in a second milestone paper, Scherzer listed these and other ways of correcting lenses; soon after, Dennis Gabor invented holography for the same purpose. These approaches will be briefly summarized and the work that led to the successful implementation of quadupole-octopole and sextupole correctors in the 1990 s will be analysed. In conclusion, the elegant role of image algebra in describing image formation and processing and, above all, in developing new methods will be mentioned. PMID:19687058

  11. Effect of oxygen stoichiometry in LuFe2O(4-δ) and its microstructure observed by aberration-corrected transmission electron microscopy.

    PubMed

    Yang, H X; Tian, H F; Wang, Z; Qin, Y B; Ma, C; Li, J Q; Cheng, Z Y; Yu, R; Zhu, J

    2012-10-31

    A series of oxygen deficient LuFe(2)O(4-δ) materials have been prepared under a controlled oxygen partial-pressure atmosphere. Measurements of magnetization reveal that the increase of oxygen deficiencies could evidently depress the ferrimagnetic phase transition temperature (T(N)). In additional to the well-known charge ordering within the (11(-)0) crystal plane, a visible structural modulation with q = (0,1/4.2,7/8) commonly appears on the (100) plane in the oxygen deficient samples. An aberration-corrected transmission electron microscopy study on the oxygen deficient samples demonstrates the presence of oxygen vacancies and local structural distortion. The atomic structural features in correlation with the structural modulation, distortion of the FeO(5) polyhedron and the (001) twinning domains have been also examined. PMID:23032863

  12. A ‘jump-to-coalescence’ mechanism during nanoparticle growth revealed by in situ aberration-corrected transmission electron microscopy observations

    NASA Astrophysics Data System (ADS)

    Neng, Wan; Shuang-ying, Lei; Jun, Xu; Martini, Matteo

    2016-05-01

    In this work, we used in situ aberration-corrected transmission electron microscopy (AC-TEM) to observe the coalescence of gold nanoparticles. We observed a critical edge-to-edge distance {d}ec∼ 0.5 {nm} below which the two particles will coalesce rapidly (jump-to-coalescence). A model based on the single-atom-triggered rapid particle contraction was proposed and verified by first-principles calculations, in which evident energy decrease was detected when adding a gold atom between two gold nanoparticles. Our ex situ TEM study of sputtering-deposited gold nanoparticles on different substrates with varied time also supports the jump-to-contact mechanism. This observation afforded physical insight into the fundamental growth mechanism during dynamic particle coalescence processes.

  13. Restoring defect structures in 3C-SiC/Si (001) from spherical aberration-corrected high-resolution transmission electron microscope images by means of deconvolution processing.

    PubMed

    Wen, C; Wan, W; Li, F H; Tang, D

    2015-04-01

    The [110] cross-sectional samples of 3C-SiC/Si (001) were observed with a spherical aberration-corrected 300 kV high-resolution transmission electron microscope. Two images taken not close to the Scherzer focus condition and not representing the projected structures intuitively were utilized for performing the deconvolution. The principle and procedure of image deconvolution and atomic sort recognition are summarized. The defect structure restoration together with the recognition of Si and C atoms from the experimental images has been illustrated. The structure maps of an intrinsic stacking fault in the area of SiC, and of Lomer and 60° shuffle dislocations at the interface have been obtained at atomic level. PMID:25637810

  14. Local symmetry breaking of a thin crystal structure of β-Si3N4 as revealed by spherical aberration corrected high-resolution transmission electron microscopy images.

    PubMed

    Kim, Hwang Su; Zhang, Zaoli; Kaiser, Ute

    2012-06-01

    This report is an extension of the study for structural imaging of 5-6 nm thick β-Si(3)N(4) [0001] crystal with a spherical aberration corrected transmission electron microscope by Zhang and Kaiser [2009. Structure imaging of β-Si(3)N(4) by spherical aberration-corrected high-resolution transmission electron microscopy. Ultramicroscopy 109, 1114-1120]. In this work, a local symmetry breaking with an uneven resolution of dumbbells in the six-membered rings revealed in the reported images in the study of Zhang and Kaiser has been analyzed in detail. It is found that this local asymmetry in the image basically is not relevant to a slight mistilt of the specimen and/or a beam tilt (coma). Rather the certain variation of the tetrahedral bond length of Si-N(4) in the crystal structure is found to be responsible for the uneven resolution with a local structural variation from region to region. This characteristic of the variation is also supposed to give a distorted lattice of apparently 2°-2.5° deviations from the perfect hexagonal unit cell as observed in the reported image in the work of Zhang and Kaiser. It is discussed that this variation may prevail only in a thin specimen with a thickness ranging ~≤ 5-6 nm. At the same time, it is noted that the average of the bond length variation is close to the fixed length known in a bulk crystal of β-Si(3)N(4). PMID:22499470

  15. Evaluation of stacking faults and associated partial dislocations in AlSb/GaAs (001) interface by aberration-corrected high-resolution transmission electron microscopy

    SciTech Connect

    Wen, C.; Ge, B. H.; Cui, Y. X.; Li, F. H.; Zhu, J.; Yu, R.; Cheng, Z. Y.

    2014-11-15

    The stacking faults (SFs) in an AlSb/GaAs (001) interface were investigated using a 300 kV spherical aberration-corrected high-resolution transmission electron microscope (HRTEM). The structure and strain distribution of the single and intersecting (V-shaped) SFs associated with partial dislocations (PDs) were characterized by the [110] HRTEM images and geometric phase analysis, respectively. In the biaxial strain maps ε{sub xx} and ε{sub yy}, a SF can be divided into several sections under different strain states (positive or negative strain values). Furthermore, the strain state for the same section of a SF is in contrast to each other in ε{sub xx} and ε{sub yy} strain maps. The modification in the strain states was attributed to the variation in the local atomic displacements for the SF in the AlSb film on the GaAs substrate recorded in the lattice image. Finally, the single SF was found to be bounded by two 30° PDs. A pair of 30° PDs near the heteroepitaxial interface reacted to form a Lomer-Cottrell sessile dislocation located at the vertices of V-shaped SFs with opposite screw components. The roles of misfit dislocations, such as the PDs, in strain relaxation were also discussed.

  16. Correcting aberration in aspheric surfaces

    NASA Astrophysics Data System (ADS)

    Ahmed, K.; Khan, A. N.; Rauf, A.; Gul, A.

    2014-06-01

    New technique eases aspheric lens fabrication and overcome traditional limitation. An aspheric lens has been designed by using optical designing software to replace the achromat (Doublet) lens of eyepiece assembly of telescope. The devised physical parameters of aspheric lens have been incorporated into the CNC Aspheric machine to fabricate the lens. The antireflection coating for visible region has been carried out on lens by employing PVD technique. In this report diminished aberration effects due to non-spherical surface profile and comparison of optical parameters of achromat (doublet) and aspheric lens is presented.

  17. Optical advantages of astigmatic aberration corrected heliostats

    NASA Astrophysics Data System (ADS)

    van Rooyen, De Wet; Schöttl, Peter; Bern, Gregor; Heimsath, Anna; Nitz, Peter

    2016-05-01

    Astigmatic aberration corrected heliostats adapt their shape in dependence of the incidence angle of the sun on the heliostat. Simulations show that this optical correction leads to a higher concentration ratio at the target and thus in a decrease in required receiver aperture in particular for smaller heliostat fields.

  18. The structure of an Al-Rh-Cu decagonal quasicrystal studied by spherical aberration (Cs)-corrected scanning transmission electron microscopy

    NASA Astrophysics Data System (ADS)

    Hiraga, Kenji; Yasuhara, Akira; Yamamoto, Kazuki; Yubuta, Kunio

    2015-05-01

    The structure of an Al-Rh-Cu decagonal quasicrystal formed with two quasiperiodic planes along the periodic axis in an Al63Rh18.5Cu18.5 alloy has been studied by spherical aberration (Cs)-corrected high-angle annular detector dark-field (HAADF)- and annular bright-field (ABF)-scanning transmission electron microscopy (STEM). Heavy atoms of Rh and mixed sites (MSs) of Al and Cu atoms projected along the periodic axis can be clearly represented as separate bright dots in observed HAADF-STEM images, and consequently arrangements of Rh atoms and MSs on the two quasiperiodic planes can be directly determined from those of bright dots in the observed HAADF-STEM image. The Rh atoms are arranged in pentagonal tiling formed with pentagonal and star-shaped pentagonal tiles with an edge-length of 0.76 nm, and also MSs with a pentagonal arrangement are located in the pentagonal tiles with definite orientations. The star-shaped pentagonal tiles in the pentagonal tiling are arranged in τ2(τ: golden ratio)-inflated pentagonal tiling with a bond-length of 2 nm. From arrangements of Rh atoms placed in pentagonal tilings with a bond-length of 2 nm, which are generated by the projection of a five-dimensional hyper-cubic lattice, occupation domains in the perpendicular space are derived. Al atoms as well as Rh atoms and MSs are represented as dark dots in an observed ABF-STEM image, and arrangements of Al atoms in well-symmetric regions are discussed.

  19. A Site-isolated Mononuclear Iridium Complex Catalyst Supported on MgO: Characterization by Spectroscopy and Aberration-corrected Scanning Transmission Electron Microscopy

    SciTech Connect

    Uzun, A.; Ortalan, V; Browning, N; Gates , B

    2010-01-01

    Supported mononuclear iridium complexes with ethene ligands were prepared by the reaction of Ir(C{sub 2}H{sub 4}){sub 2}(acac) (acac is CH{sub 3}COCHCOCH{sub 3}) with highly dehydroxylated MgO. Characterization of the supported species by extended X-ray absorption fine structure (EXAFS) and infrared (IR) spectroscopies showed that the resultant supported organometallic species were Ir(C{sub 2}H{sub 4}){sub 2}, formed by the dissociation of the acac ligand from Ir(C{sub 2}H{sub 4}){sub 2}(acac) and bonding of the Ir(C{sub 2}H{sub 4}){sub 2} species to the MgO surface. Direct evidence of the site-isolation of these mononuclear complexes was obtained by aberration-corrected scanning transmission electron microscopy (STEM); the images demonstrate the presence of the iridium complexes in the absence of any clusters. When the iridium complexes were probed with CO, the resulting IR spectra demonstrated the formation of Ir(CO){sub 2} complexes on the MgO surface. The breadth of the {nu}{sub CO} bands demonstrates a substantial variation in the metal-support bonding, consistent with the heterogeneity of the MgO surface; the STEM images are not sufficient to characterize this heterogeneity. The supported iridium complexes catalyzed ethene hydrogenation at room temperature and atmospheric pressure in a flow reactor, and EXAFS spectra indicated that the mononuclear iridium species remained intact. STEM images of the used catalyst confirmed that almost all of the iridium complexes remained intact, but this method was sensitive enough to detect a small degree of aggregation of the iridium on the support.

  20. Prospects for aberration corrected electron precession.

    PubMed

    Own, C S; Sinkler, W; Marks, L D

    2007-01-01

    Recent developments in aberration control in the TEM have yielded a tremendous enhancement of direct imaging capabilities for studying atomic structures. However, aberration correction also has substantial benefits for achieving ultra-resolution in the TEM through reciprocal space techniques. Several tools are available that allow very accurate detection of the electron distribution in surfaces allowing precise atomic-scale characterization through statistical inversion techniques from diffraction data. The precession technique now appears to extend this capability to the bulk. This article covers some of the progress in this area and details requirements for a next-generation analytical diffraction instrument. An analysis of the contributions offered by aberration correction for precision electron precession is included. PMID:17207934

  1. Transcranial phase aberration correction using beam simulations and MR-ARFI

    SciTech Connect

    Vyas, Urvi Kaye, Elena; Pauly, Kim Butts

    2014-03-15

    Purpose: Transcranial magnetic resonance-guided focused ultrasound surgery is a noninvasive technique for causing selective tissue necrosis. Variations in density, thickness, and shape of the skull cause aberrations in the location and shape of the focal zone. In this paper, the authors propose a hybrid simulation-MR-ARFI technique to achieve aberration correction for transcranial MR-guided focused ultrasound surgery. The technique uses ultrasound beam propagation simulations with MR Acoustic Radiation Force Imaging (MR-ARFI) to correct skull-caused phase aberrations. Methods: Skull-based numerical aberrations were obtained from a MR-guided focused ultrasound patient treatment and were added to all elements of the InSightec conformal bone focused ultrasound surgery transducer during transmission. In the first experiment, the 1024 aberrations derived from a human skull were condensed into 16 aberrations by averaging over the transducer area of 64 elements. In the second experiment, all 1024 aberrations were applied to the transducer. The aberrated MR-ARFI images were used in the hybrid simulation-MR-ARFI technique to find 16 estimated aberrations. These estimated aberrations were subtracted from the original aberrations to result in the corrected images. Each aberration experiment (16-aberration and 1024-aberration) was repeated three times. Results: The corrected MR-ARFI image was compared to the aberrated image and the ideal image (image with zero aberrations) for each experiment. The hybrid simulation-MR-ARFI technique resulted in an average increase in focal MR-ARFI phase of 44% for the 16-aberration case and 52% for the 1024-aberration case, and recovered 83% and 39% of the ideal MR-ARFI phase for the 16-aberrations and 1024-aberration case, respectively. Conclusions: Using one MR-ARFI image and noa priori information about the applied phase aberrations, the hybrid simulation-MR-ARFI technique improved the maximum MR-ARFI phase of the beam's focus.

  2. The correction of electron lens aberrations.

    PubMed

    Hawkes, P W

    2015-09-01

    The progress of electron lens aberration correction from about 1990 onwards is chronicled. Reasonably complete lists of publications on this and related topics are appended. A present for Max Haider and Ondrej Krivanek in the year of their 65th birthdays. By a happy coincidence, this review was completed in the year that both Max Haider and Ondrej Krivanek reached the age of 65. It is a pleasure to dedicate it to the two leading actors in the saga of aberration corrector design and construction. They would both wish to associate their colleagues with such a tribute but it is the names of Haider and Krivanek (not forgetting Joachim Zach) that will remain in the annals of electron optics, next to that of Harald Rose. I am proud to know that both regard me as a friend as well as a colleague. PMID:26025209

  3. Direct imaging of crystal structure and defects in metastable Ge{sub 2}Sb{sub 2}Te{sub 5} by quantitative aberration-corrected scanning transmission electron microscopy

    SciTech Connect

    Ross, Ulrich; Lotnyk, Andriy Thelander, Erik; Rauschenbach, Bernd

    2014-03-24

    Knowledge about the atomic structure and vacancy distribution in phase change materials is of foremost importance in order to understand the underlying mechanism of fast reversible phase transformation. In this Letter, by combining state-of-the-art aberration-corrected scanning transmission electron microscopy with image simulations, we are able to map the local atomic structure and composition of a textured metastable Ge{sub 2}Sb{sub 2}Te{sub 5} thin film deposited by pulsed laser deposition with excellent spatial resolution. The atomic-resolution scanning transmission electron microscopy investigations display the heterogeneous defect structure of the Ge{sub 2}Sb{sub 2}Te{sub 5} phase. The obtained results are discussed. Highly oriented Ge{sub 2}Sb{sub 2}Te{sub 5} thin films appear to be a promising approach for further atomic-resolution investigations of the phase change behavior of this material class.

  4. New Views of Materials through Aberration-corrected STEM

    SciTech Connect

    Pennycook, Stephen J; Varela del Arco, Maria

    2011-01-01

    The successful correction of third-order and, more recently, fifth-order aberrations has enormously enhanced the capabilities of the scanning transmission electron microscope (STEM), by not only achieving record resolution, but also allowing near 100% efficiency for electron energy loss spectroscopy, and higher currents for two-dimensional spectrum imaging. These advances have meant that the intrinsic advantages of the STEM, incoherent imaging and simultaneous collection of multiple complementary images can now give new insights into many areas of materials physics. Here, we review a number of examples, mostly from the field of complex oxides, and look towards new directions for the future.

  5. Aberration-Corrected Scanning Transmission Electron Microscope (STEM) Through-Focus Imaging for Three-Dimensional Atomic Analysis of Bismuth Segregation on Copper [001]/33° Twist Bicrystal Grain Boundaries.

    PubMed

    Wade, Charles Austin; McLean, Mark J; Vinci, Richard P; Watanabe, Masashi

    2016-06-01

    Scanning transmission electron microscope (STEM) through-focus imaging (TFI) has been used to determine the three-dimensional atomic structure of Bi segregation-induced brittle Cu grain boundaries (GBs). With TFI, it is possible to observe single Bi atom distributions along Cu [001] twist GBs using an aberration-corrected STEM operating at 200 kV. The depth resolution is ~5 nm. Specimens with GBs intentionally inclined with respect to the microscope's optic axis were used to investigate Bi segregant atom distributions along and through the Cu GB. It was found that Bi atoms exist at most once per Cu unit cell along the GB, meaning that no continuous GB film is present. Therefore, the reduced fracture toughness of this particular Bi-doped Cu boundary would not be caused by fracture of Bi-Bi bonds. PMID:27145975

  6. Peripheral Aberrations and Image Quality for Contact Lens Correction

    PubMed Central

    Shen, Jie; Thibos, Larry N.

    2011-01-01

    Purpose Contact lenses reduced the degree of hyperopic field curvature present in myopic eyes and rigid contact lenses reduced sphero-cylindrical image blur on the peripheral retina, but their effect on higher order aberrations and overall optical quality of the eye in the peripheral visual field is still unknown. The purpose of our study was to evaluate peripheral wavefront aberrations and image quality across the visual field before and after contact lens correction. Methods A commercial Hartmann-Shack aberrometer was used to measure ocular wavefront errors in 5° steps out to 30° of eccentricity along the horizontal meridian in uncorrected eyes and when the same eyes are corrected with soft or rigid contact lenses. Wavefront aberrations and image quality were determined for the full elliptical pupil encountered in off-axis measurements. Results Ocular higher-order aberrations increase away from fovea in the uncorrected eye. Third-order aberrations are larger and increase faster with eccentricity compared to the other higher-order aberrations. Contact lenses increase all higher-order aberrations except 3rd-order Zernike terms. Nevertheless, a net increase in image quality across the horizontal visual field for objects located at the foveal far point is achieved with rigid lenses, whereas soft contact lenses reduce image quality. Conclusions Second order aberrations limit image quality more than higher-order aberrations in the periphery. Although second-order aberrations are reduced by contact lenses, the resulting gain in image quality is partially offset by increased amounts of higher-order aberrations. To fully realize the benefits of correcting higher-order aberrations in the peripheral field requires improved correction of second-order aberrations as well. PMID:21873925

  7. Correcting Aberrations in Complex Magnet Systems for Muon Cooling Channels

    SciTech Connect

    J.A. Maloney, B. Erdelyi, A. Afanaciev, R.P. Johnson, Y.S. Derbenev, V.S. Morozov

    2011-03-01

    Designing and simulating complex magnet systems needed for cooling channels in both neutrino factories and muon colliders requires innovative techniques to correct for both chromatic and spherical aberrations. Optimizing complex systems, such as helical magnets for example, is also difficult but essential. By using COSY INFINITY, a differential algebra based code, the transfer and aberration maps can be examined to discover what critical terms have the greatest influence on these aberrations.

  8. Isoplanatic patch size for aberration correction in ultrasonic imaging

    NASA Astrophysics Data System (ADS)

    Pilkington, Wayne C.

    Methods and experimental results are described for determination of the region size in an aberrating medium over which a single set of aberration estimates can achieve satisfactory b-scan resolution ( i.e., the isoplanatic patch) using time-shift compensation for aberration correction of ultrasonic transmit and receive beams. Based on twenty percent allowable increases in the -12 dB width of the receive or transmit beam focus using cross-correction compared to self-correction, the isoplanatic patch sizes were found to between 3 and 5 millimeters laterally for a linearly-scanned transducer, and at least 12 millimeters axially for a target distance of 55 millimeters and aberration comparable to human abdominal wall. These sizes depend on the aberration severity, reference site axial position, and allowable resolution degradation with cross-correction. The lateral isoplanatic patch size of a linearly scanned image can be more than doubled to match that of a beam-steered acquisition using aberration estimate position matching relative to the tissue surface. Further expansion of the lateral isoplanatic patch size by an additional 50 to 100 percent for both scanning methods is also shown through propagation path matched cross-correction mapping of aberration estimates. The specific mapping required to achieve the best propagation path match depends on the axial distribution of the aberrating structures, the focal depth being imaged, and the cross-correction distance. The effectiveness of alternate methods to derive propagation path matching maps with and without a priori knowledge of aberrator spatial distribution are contrasted; and a means to dynamically adjust correction maps to maximize isoplanatic patch sizes is proposed and verified. Lateral cross-correction mapping and the map changes required for each cross-correction distance can all be implemented with simple shifting of aberration estimates within the transducer aperture. Therefore, use of optimally mapped

  9. Adaptive aberration correction using a triode hyperbolic electron mirror.

    PubMed

    Fitzgerald, J P S; Word, R C; Könenkamp, R

    2011-01-01

    A converging electron mirror can be used to compensate spherical and chromatic aberrations in an electron microscope. This paper presents an analytical solution to a novel triode (three electrode) hyperbolic mirror as an improvement to the well-known diode (two electrode) hyperbolic mirror for aberration correction. A weakness of the diode mirror is a lack of flexibility in changing the chromatic and spherical aberration coefficients independently without changes in the mirror geometry. In order to remove this limitation, a third electrode can be added. We calculate the optical properties of the resulting triode mirror analytically on the basis of a simple model field distribution. We present the optical properties-the object/image distance, z(0), and the coefficients of spherical and chromatic aberration, C(s) and C(c), of both mirror types from an analysis of electron trajectories in the mirror field. From this analysis, we demonstrate that while the properties of both designs are similar, the additional parameters in the triode mirror improve the range of aberration that can be corrected. The triode mirror is also able to provide a dynamic adjustment range of chromatic aberration for fixed spherical aberration and focal length, or any permutation of these three parameters. While the dynamic range depends on the values of aberration correction needed, a nominal 10% tuning range is possible for most configurations accompanied by less than 1% change in the other two properties. PMID:21930022

  10. Correction of spherochromatic aberration by system of thin layers

    NASA Astrophysics Data System (ADS)

    Miks, A.; Novak, J.

    2005-08-01

    It is well-known from the theory of optical imaging that optical systems generally show a presence of a chromatic aberration, which originates from a variation of the refraction index of glass on the wavelength of light. The chromatic aberration must be well corrected in order to obtain a good quality of optical image. In practice, it is used a proper combination of optical elements manufactured from different types of optical glass with a different dispersion in order to suppress the chromatic aberration. Our work shows a way how to correct spherochromatic aberration using a system of thin aspherical layers. The equations are derived for determination of parameters of thin layers with respect to a required spherochromatic aberration.

  11. Calculations of spherical aberration-corrected imaging behaviour.

    PubMed

    Chang, Lan Yun; Chen, Fu Rong; Kirkland, Angus I; Kai, Ji Jung

    2003-01-01

    Different optimal operating conditions for a C3-corrected transmission electron microscope were compared for both conventional field emission sources and for the next generation of monochromated instruments. In particular, the contrast transfer functions and corresponding wave aberration functions for two previously proposed optimal conditions in which C3 is adjusted to compensate, respectively, C5 or Cc are critically compared. The results indicate that in the presence of a small positive C5 the former provides flat transfer to the information limit whereas the latter shows oscillatory transfer at high spatial frequencies, which is more pronounced for the monochromated instrument. The effects of this behaviour were further investigated through multislice simulations of Si [110] and diamond [110] under the C5-limited condition. These confirm that for the former structure with an interatomic separation of 0.14 nm this aberration has little influence, but that for the latter with a sub-0.1 nm interatomic separation its presence leads to a restricted defocus range over which the structure is faithfully resolved. PMID:14599096

  12. Automated computational aberration correction method for broadband interferometric imaging techniques.

    PubMed

    Pande, Paritosh; Liu, Yuan-Zhi; South, Fredrick A; Boppart, Stephen A

    2016-07-15

    Numerical correction of optical aberrations provides an inexpensive and simpler alternative to the traditionally used hardware-based adaptive optics techniques. In this Letter, we present an automated computational aberration correction method for broadband interferometric imaging techniques. In the proposed method, the process of aberration correction is modeled as a filtering operation on the aberrant image using a phase filter in the Fourier domain. The phase filter is expressed as a linear combination of Zernike polynomials with unknown coefficients, which are estimated through an iterative optimization scheme based on maximizing an image sharpness metric. The method is validated on both simulated data and experimental data obtained from a tissue phantom, an ex vivo tissue sample, and an in vivo photoreceptor layer of the human retina. PMID:27420526

  13. Brief history of the Cambridge STEM aberration correction project and its progeny.

    PubMed

    Brown, L Michael; Batson, Philip E; Dellby, Niklas; Krivanek, Ondrej L

    2015-10-01

    We provide a brief history of the project to correct the spherical aberration of the scanning transmission electron microscope (STEM) that started in Cambridge (UK) and continued in Kirkland (WA, USA), Yorktown Heights (NY, USA), and other places. We describe the project in the full context of other aberration correction research and related work, partly in response to the incomplete context presented in the paper "In quest of perfection in electron optics: A biographical sketch of Harald Rose on the occasion of his 80th birthday", recently published in Ultramicroscopy. PMID:26094204

  14. Towards Aberration Correction of Transcranial Ultrasound Using Acoustic Droplet Vaporization

    PubMed Central

    Haworth, Kevin J.; Fowlkes, J. Brian; Carson, Paul L.; Kripfgans, Oliver D.

    2008-01-01

    We report on the first experiments demonstrating the transcranial acoustic formation of stable gas bubbles that can be used for transcranial ultrasound aberration correction. It is demonstrated that the gas bubbles can be formed transcranially by phase-transitioning single, superheated, micron-size, liquid dodecafluoropentane droplets with ultrasound, a process known as acoustic droplet vaporization (ADV). ADV was performed at 550 kHz, where the skull is less attenuating and aberrating, allowing for higher-amplitudes to be reached at the focus. Additionally, it is demonstrated that time-reversal focusing at 1 MHz can be used to correct for transcranial aberrations with a single gas bubble acting as a point beacon. Aberration correction was performed using a synthetic aperture approach and verified by the realignment of the scattered waveforms. Under the conditions described below, time-reversal aberration correction using gas bubbles resulted in a gain of 1.9 ± 0.3 in an introduced focusing factor. This is a small fraction of the gain anticipated from complete transmit-receive of a fully-populated two-dimensional array with sub-wavelength elements. PMID:17935872

  15. Studies of a magnetically focused electrostatic mirror. II. Aberration corrections

    PubMed

    Tsai

    2000-02-01

    A magnetically focused electrostatic mirror is shown to be able to correct the spherical and chromatic aberrations of a probe forming system simultaneously. The probe forming system comprises a uniform magnetic lens and a uniform electrostatic mirror. Previous theoretical investigations showed that the spherical and chromatic aberration coefficients of these two components are the same values but with opposite sign, whose combination will therefore be free from aberrations. The experimental arrangement used a solenoid to produce a uniform magnetic field, and a series of plate electrodes to produce a uniform electrostatic field. These fields are shown to satisfy the experimental requirements. By deliberately changing the extraction voltage to defocus the electron beam, the author is able to observe correction of chromatic aberration by one order of magnitude. By deliberately changing the lens field and the mirror field, the author is able to observe the reduction of the asymmetry caused by the spherical aberration, which the author believes also indicates correction by one order of magnitude. PMID:10652006

  16. Aberration corrected STEM of iron rhodium nanoislands

    NASA Astrophysics Data System (ADS)

    McLaren, M. J.; Hage, F. S.; Loving, M.; Ramasse, Q. M.; Lewis, L. H.; Marrows, C. H.; Brydson, R. M. D.

    2014-06-01

    Iron-rhodium (FeRh) nanoislands of equiatomic composition have been analysed using scanning transmission electron microscopy (STEM) electron energy loss spec-troscopy(EELS) and high angle annular dark field (HAADF) techniques. Previous magne-tometry results have lead to a hypothesis that at room temperature the core of the islands are antiferromagnetic while the shell has a small ferromagnetic signal. The causes of this effect are most likely to be a difference in composition at the edges or a strain on the island that stretches the lattice and forces the ferromagnetic transition. The results find, at the film-substrate interface, an iron-rich layer ~ 5 Å thick that could play a key role in affecting the magnetostructural transition around the interfacial region and account for the room temperature ferromagnetism.

  17. Holographic optical system for aberration corrections in laser Doppler velocimetry

    NASA Technical Reports Server (NTRS)

    Kim, R. C.; Case, S. K.; Schock, H. J.

    1985-01-01

    An optical system containing multifaceted holographic optical elements (HOEs) has been developed to correct for aberrations introduced by nonflat windows in laser Doppler velocimetry. The multifacet aberration correction approach makes it possible to record on one plate many sets of adjacent HOEs that address different measurement volume locations. By using 5-mm-diameter facets, it is practical to place 10-20 sets of holograms on one 10 x 12.5-cm plate, so that the procedure of moving the entire optical system to examine different locations may not be necessary. The holograms are recorded in dichromated gelatin and therefore are nonabsorptive and suitable for use with high-power argon laser beams. Low f-number optics coupled with a 90-percent efficient distortion-correcting hologram in the collection side of the system yield high optical efficiency.

  18. Phase aberration correction by correlation in digital holographic adaptive optics

    PubMed Central

    Liu, Changgeng; Yu, Xiao; Kim, Myung K.

    2013-01-01

    We present a phase aberration correction method based on the correlation between the complex full-field and guide-star holograms in the context of digital holographic adaptive optics (DHAO). Removal of a global quadratic phase term before the correlation operation plays an important role in the correction. Correlation operation can remove the phase aberration at the entrance pupil plane and automatically refocus the corrected optical field. Except for the assumption that most aberrations lie at or close to the entrance pupil, the presented method does not impose any other constraints on the optical systems. Thus, it greatly enhances the flexibility of the optical design for DHAO systems in vision science and microscopy. Theoretical studies show that the previously proposed Fourier transform DHAO (FTDHAO) is just a special case of this general correction method, where the global quadratic phase term and a defocus term disappear. Hence, this correction method realizes the generalization of FTDHAO into arbitrary DHAO systems. The effectiveness and robustness of this method are demonstrated by simulations and experiments. PMID:23669707

  19. Correction of axial optical aberrations in hyperspectral imaging systems

    NASA Astrophysics Data System (ADS)

    Špiclin, Žiga; Pernuš, Franjo; Likar, Boštjan

    2011-03-01

    In hyper-spectral imaging systems with a wide spectral range, axial optical aberrations may lead to a significant blurring of image intensities in certain parts of the spectral range. Axial optical aberrations arise from the indexof- refraction variations that is dependent on the wavelength of incident light. To correct axial optical aberrations the point-spread function (PSF) of the image acquisition system needs to be identified. We proposed a multiframe joint blur identification and image restoration method that maximizes the likelihood of local image energy distributions between spectral images. Gaussian mixture model based density estimate provides a link between corresponding spatial information shared among spectral images so as to find and restore the image edges via a PSF update. Model of the PSF was assumed to be a linear combination of Gaussian functions, therefore the blur identification process had to find only the corresponding scalar weights of each Gaussian function. Using the identified PSF, image restoration was performed by the iterative Richardson-Lucy algorithm. Experiments were conducted on four different biological samples using a hyper-spectral imaging system based on acousto-optic tunable filter in the visible spectral range (0.55 - 1.0 μm). By running the proposed method, the quality of raw spectral images was substantially improved. Image quality improvements were quantified by a measure of contrast and demonstrate the potential of the proposed method for the correction of axial optical aberrations.

  20. Aberration Corrected Photoemission Electron Microscopy with Photonics Applications

    NASA Astrophysics Data System (ADS)

    Fitzgerald, Joseph P. S.

    Photoemission electron microscopy (PEEM) uses photoelectrons excited from material surfaces by incident photons to probe the interaction of light with surfaces with nanometer-scale resolution. The point resolution of PEEM images is strongly limited by spherical and chromatic aberration. Image aberrations primarily originate from the acceleration of photoelectrons and imaging with the objective lens and vary strongly in magnitude with specimen emission characteristics. Spherical and chromatic aberration can be corrected with an electrostatic mirror, and here I develop a triode mirror with hyperbolic geometry that has two adjacent, field-adjustable regions. I present analytic and numerical models of the mirror and show that the optical properties agree to within a few percent. When this mirror is coupled with an electron lens, it can provide a large dynamic range of correction and the coefficients of spherical and chromatic aberration can be varied independently. I report on efforts to realize a triode mirror corrector, including design, characterization, and alignment in our microscope at Portland State University (PSU). PEEM may be used to investigate optically active nanostructures, and we show that photoelectron emission yields can be identified with diffraction, surface plasmons, and dielectric waveguiding. Furthermore, we find that photoelectron micrographs of nanostructured metal and dielectric structures correlate with electromagnetic field calculations. We conclude that photoemission is highly spatially sensitive to the electromagnetic field intensity, allowing the direct visualization of the interaction of light with material surfaces at nanometer scales and over a wide range of incident light frequencies.

  1. Spherical Aberration Corrections for the Electrostatic Gridded Lens

    SciTech Connect

    Pikin,A.

    2008-05-01

    Two methods of spherical aberration corrections of an electrostatic gridded lens have been studied with ray tracing simulations. Both methods are based on modifying electrostatic field on the periphery of the lens. In a simplest case such modification is done by extending the part of the grid support on its radial periphery in axial direction. In alternative method the electric field on the radial periphery of the lens is modified by applying an optimum voltage on an electrically isolated correcting electrode. It was demonstrated, that for a given focal length the voltage on this lens can be optimized for minimum aberration The performance of lenses is presented as a lens contribution to the beam RMS normalized emittance.

  2. Harmonic source wavefront aberration correction for ultrasound imaging

    PubMed Central

    Dianis, Scott W.; von Ramm, Olaf T.

    2011-01-01

    A method is proposed which uses a lower-frequency transmit to create a known harmonic acoustical source in tissue suitable for wavefront correction without a priori assumptions of the target or requiring a transponder. The measurement and imaging steps of this method were implemented on the Duke phased array system with a two-dimensional (2-D) array. The method was tested with multiple electronic aberrators [0.39π to 1.16π radians root-mean-square (rms) at 4.17 MHz] and with a physical aberrator 0.17π radians rms at 4.17 MHz) in a variety of imaging situations. Corrections were quantified in terms of peak beam amplitude compared to the unaberrated case, with restoration between 0.6 and 36.6 dB of peak amplitude with a single correction. Standard phantom images before and after correction were obtained and showed both visible improvement and 14 dB contrast improvement after correction. This method, when combined with previous phase correction methods, may be an important step that leads to improved clinical images. PMID:21303031

  3. An adaptive optic for correcting low-order wavefront aberrations

    SciTech Connect

    Thompson, C A; Wilhelmsen, J

    1999-09-02

    Adaptive Optics used for correcting low-order wavefront aberrations were tested and compared using interferometry, beam propagation, and a far-field test. Results confirm that the design and manufacturing specifications were met. Experimental data also confirms theoretical performance expectations, indicating the usefulness of these optics (especially in a laser-beam processing system), and identifying the resulting differences between the two fabrication methods used to make the optics.

  4. Chromatic Aberration Correction for Atomic Resolution TEM Imaging from 20 to 80 kV.

    PubMed

    Linck, Martin; Hartel, Peter; Uhlemann, Stephan; Kahl, Frank; Müller, Heiko; Zach, Joachim; Haider, Max; Niestadt, Marcel; Bischoff, Maarten; Biskupek, Johannes; Lee, Zhongbo; Lehnert, Tibor; Börrnert, Felix; Rose, Harald; Kaiser, Ute

    2016-08-12

    Atomic resolution in transmission electron microscopy of thin and light-atom materials requires a rigorous reduction of the beam energy to reduce knockon damage. However, at the same time, the chromatic aberration deteriorates the resolution of the TEM image dramatically. Within the framework of the SALVE project, we introduce a newly developed C_{c}/C_{s} corrector that is capable of correcting both the chromatic and the spherical aberration in the range of accelerating voltages from 20 to 80 kV. The corrector allows correcting axial aberrations up to fifth order as well as the dominating off-axial aberrations. Over the entire voltage range, optimum phase-contrast imaging conditions for weak signals from light atoms can be adjusted for an optical aperture of at least 55 mrad. The information transfer within this aperture is no longer limited by chromatic aberrations. We demonstrate the performance of the microscope using the examples of 30 kV phase-contrast TEM images of graphene and molybdenum disulfide, showing unprecedented contrast and resolution that matches image calculations. PMID:27563976

  5. Chromatic Aberration Correction for Atomic Resolution TEM Imaging from 20 to 80 kV

    NASA Astrophysics Data System (ADS)

    Linck, Martin; Hartel, Peter; Uhlemann, Stephan; Kahl, Frank; Müller, Heiko; Zach, Joachim; Haider, Max.; Niestadt, Marcel; Bischoff, Maarten; Biskupek, Johannes; Lee, Zhongbo; Lehnert, Tibor; Börrnert, Felix; Rose, Harald; Kaiser, Ute

    2016-08-01

    Atomic resolution in transmission electron microscopy of thin and light-atom materials requires a rigorous reduction of the beam energy to reduce knockon damage. However, at the same time, the chromatic aberration deteriorates the resolution of the TEM image dramatically. Within the framework of the SALVE project, we introduce a newly developed Cc/Cs corrector that is capable of correcting both the chromatic and the spherical aberration in the range of accelerating voltages from 20 to 80 kV. The corrector allows correcting axial aberrations up to fifth order as well as the dominating off-axial aberrations. Over the entire voltage range, optimum phase-contrast imaging conditions for weak signals from light atoms can be adjusted for an optical aperture of at least 55 mrad. The information transfer within this aperture is no longer limited by chromatic aberrations. We demonstrate the performance of the microscope using the examples of 30 kV phase-contrast TEM images of graphene and molybdenum disulfide, showing unprecedented contrast and resolution that matches image calculations.

  6. An aberration corrected photoemission electron microscope at the advanced light source

    SciTech Connect

    Feng, J.; MacDowell, A.A.; Duarte, R.; Doran, A.; Forest, E.; Kelez, N.; Marcus, M.; Munson, D.; Padmore, H.; Petermann, K.; Raoux, S.; Robin, D.; Scholl, A.; Schlueter, R.; Schmid, P.; Stohr, J.; Wan, W.; Wei, D.H.; Wu, Y.

    2003-11-01

    Design of a new aberration corrected Photoemission electron microscope PEEM3 at the Advanced Light Source is outlined. PEEM3 will be installed on an elliptically polarized undulator beamline and will be used for the study of complex materials at high spatial and spectral resolution. The critical components of PEEM3 are the electron mirror aberration corrector and aberration-free magnetic beam separator. The models to calculate the optical properties of the electron mirror are discussed. The goal of the PEEM3 project is to achieve the highest possible transmission of the system at resolutions comparable to our present PEEM2 system (50 nm) and to enable significantly higher resolution, albeit at the sacrifice of intensity. We have left open the possibility to add an energy filter at a later date, if it becomes necessary driven by scientific need to improve the resolution further.

  7. Research on stitching interferometry aspheric surface with correcting systemic aberration

    NASA Astrophysics Data System (ADS)

    Qiao, Yujing; Han, Guihua

    2010-10-01

    Sub-aperture stitching interferometry was originally used for measurement of large-diameter plane and spherical, it is a technological means that uses small-caliber interferometer to test each parts of optical component, and then all the subaperture data are combined or stitched together to create a map of the full surface. Correcting adjust errors of three directions is currently stitching algorithm for realizing the stitching testing aspheric surface. But without spatial analysis for bias errors of positioning mechanism, we can't know exactly the actual appearance of bias errors, consequently will not be able to implement a accuracy stitching.. Because the accuracy of individual stitching can't meet the accuracy requirements, the test result of stitching interferometry aspheric surface will not meet requirements of accuracy due to the errors accumulation. Correcting systemic aberration method is presented to solve the problem mentioned above. It is based on the analysis of the actual impact appearance of location components' bias error in interferometry. The actual appearance is exactly the same after comparing with the Seidle aberration. a correction bias errors model of stitching measure is found based on the analysis, and it proposed an accuracy stitching measurement for quadric surface measurement. It gets the stitching coefficients with least square fitting method, and acquires the estimate values of bias errors in sub-aperture stitching components, and corrects the high-order systemic aberration, therefore improve the fitting accuracy in sub-apertures overlap zone. The experiment result shows, the stitching accuracy of this stitching method is higher than traditional stitching method.

  8. Ultrahigh-vacuum third-order spherical aberration (Cs) corrector for a scanning transmission electron microscope.

    PubMed

    Mitsuishi, Kazutaka; Takeguchi, Masaki; Kondo, Yukihito; Hosokawa, Fumio; Okamoto, Kimiharu; Sannomiya, Takumi; Hori, Madoka; Iwama, Takeshi; Kawazoe, Muneyuki; Furuya, Kazuo

    2006-12-01

    Initial results from an ultrahigh-vacuum (UHV) third-order spherical aberration (Cs) corrector for a dedicated scanning transmission electron microscopy, installed at the National Institute for Materials Science, Tsukuba, Japan, are presented here. The Cs corrector is of the dual hexapole type. It is UHV compatible and was installed on a UHV column. The Ronchigram obtained showed an extension of the sweet spot area, indicating a successful correction of the third-order spherical aberration Cs. The power spectrum of an image demonstrated that the resolution achieved was 0.1 nm. A first trial of the direct measurement of the fifth-order spherical aberration C5 was also attempted on the basis of a Ronchigram fringe measurement. PMID:19830936

  9. Correcting for Beam Aberrations in a Beam-Waveguide Antenna

    NASA Technical Reports Server (NTRS)

    Franco, Manuel; Slobin, Stephen; Veruttipong, Watt

    2003-01-01

    A method for correcting the aim of a beam-waveguide microwave antenna compensates for the beam aberration that occurs during radio tracking of a target that has a component of velocity transverse to the line of sight from the tracking station. The method was devised primarily for use in tracking of distant target spacecraft by large terrestrial beam-waveguide antennas of NASA's Deep Space Network (DSN). The method should also be adaptable to tracking, by other beam-waveguide antennas, of targets that move with large transverse velocities at large distances from the antennas.

  10. A proposal for the holographic correction of incoherent aberrations by tilted reference waves.

    PubMed

    Röder, Falk; Lubk, Axel

    2015-05-01

    The recently derived general transfer theory for off-axis electron holography provides a new approach for reconstructing the electron wave beyond the conventional sideband information limit. Limited ensemble coherence of the electron beam between object and reference area leads to an attenuation of spatial frequencies of the object exit wave in the presence of aberrations of the objective lens. Concerted tilts of the reference wave under the condition of an invariant object exit wave are proposed to diminish the aberration impact on spatial frequencies even beyond the sideband information limit allowing its transfer with maximum possible contrast. In addition to the theoretical considerations outlined in detail, an experimental proof-of-principle is presented. A fully controlled tilt of the reference wave, however, remains as a promising task for the future. The use of a hologram series with varying reference wave tilt is considered for linearly synthesizing an effective aperture for the transfer into the sideband with broader bandwidth compared to conventional off-axis electron holography allowing us to correct the incoherent aberrations in transmission electron microscopy. Furthermore, tilting a reference wave with respect to a plane wave is expected to be an alternative way for measuring the coherent and incoherent aberrations of a transmission electron microscope. The capability of tilting the reference wave is expected to be beneficial for improving the signal-to-noise ratio in dark-field off-axis electron holography as well. PMID:25680104

  11. Active Correction of Aberrations of Low-Quality Telescope Optics

    NASA Technical Reports Server (NTRS)

    Hemmati, Hamid; Chen, Yijian

    2007-01-01

    A system of active optics that includes a wavefront sensor and a deformable mirror has been demonstrated to be an effective means of partly correcting wavefront aberrations introduced by fixed optics (lenses and mirrors) in telescopes. It is envisioned that after further development, active optics would be used to reduce wavefront aberrations of about one wave or less in telescopes having aperture diameters of the order of meters or tens of meters. Although this remaining amount of aberration would be considered excessive in scientific applications in which diffraction-limited performance is required, it would be acceptable for free-space optical- communication applications at wavelengths of the order of 1 m. To prevent misunderstanding, it is important to state the following: The technological discipline of active optics, in which the primary or secondary mirror of a telescope is directly and dynamically tilted, distorted, and/or otherwise varied to reduce wavefront aberrations, has existed for decades. The term active optics does not necessarily mean the same thing as does adaptive optics, even though active optics and adaptive optics are related. The term "adaptive optics" is often used to refer to wavefront correction at speeds characterized by frequencies ranging up to between hundreds of hertz and several kilohertz high enough to enable mitigation of adverse effects of fluctuations in atmospheric refraction upon propagation of light beams. The term active optics usually appears in reference to wavefront correction at significantly lower speeds, characterized by times ranging from about 1 second to as long as minutes. Hence, the novelty of the present development lies, not in the basic concept of active or adaptive optics, but in the envisioned application of active optics in conjunction with a deformable mirror to achieve acceptably small wavefront errors in free-space optical communication systems that include multi-meter-diameter telescope mirrors that are

  12. Seeing Inside Materials by Aberration-Corrected Electron Microscopy

    SciTech Connect

    Pennycook, Stephen J

    2011-01-01

    The recent successful correction of lens aberrations in the electron microscope has improved resolution by more than a factor of two in just a few years, bringing many benefits for the study of materials. These benefits extend significantly beyond enhanced resolution alone. Aberration correction gives higher resolution by allowing the objective lens to have a wider aperture, which also results in a reduced depth of field. This effect can be used to only focus specific sections inside materials for the first time. In this contribution we describe recent results exploiting this capability. Additionally, we show how combining the microscopy data with first-principles theory gives new insights into materials properties. We cover two applications, both involving heavy atoms in a lighter host. The first shows how single Hf atoms can be mapped in three dimensions inside the 1 nm-wide SiO2 region of a high dielectric constant device structure, and how a link to macroscopic device properties results through theoretical calculations. The second example is from the field of nanoscience, where individual Au atoms are imaged inside Si nanowires grown by a vapor-liquid-solid mechanism. The majority of Au atoms are probably injected by the highly energetic electron beam. However, their observed sites and atomic configurations represent at least meta-stable configurations and match well to results from density functional calculations.

  13. High order aberration and straylight evaluation after cataract surgery with implantation of an aspheric, aberration correcting monofocal intraocular lens

    PubMed Central

    Kretz, Florian T A; Tandogan, Tamer; Khoramnia, Ramin; Auffarth, Gerd U

    2015-01-01

    AIM To evaluate the quality of vision in respect to high order aberrations and straylight perception after implantation of an aspheric, aberration correcting, monofocal intraocular lens (IOL). METHODS Twenty-one patients (34 eyes) aged 50 to 83y underwent cataract surgery with implantation of an aspheric, aberration correcting IOL (Tecnis ZCB00, Abbott Medical Optics). Three months after surgery they were examined for uncorrected (UDVA) and corrected distance visual acuity (CDVA), contrast sensitivity (CS) under photopic and mesopic conditions with and without glare source, ocular high order aberrations (HOA, Zywave II) and retinal straylight (C-Quant). RESULTS Postoperatively, patients achieved a postoperative CDVA of 0.0 logMAR or better in 97.1% of eyes. Mean values of high order abberations were +0.02±0.27 (primary coma components) and -0.04±0.16 (spherical aberration term). Straylight values of the C-Quant were 1.35±0.44 log which is within normal range of age matched phakic patients. The CS measurements under mesopic and photopic conditions in combination with and without glare did not show any statistical significance in the patient group observed (P≥0.28). CONCLUSION The implantation of an aspherical aberration correcting monofocal IOL after cataract surgery resulted in very low residual higher order aberration (HOA) and normal straylight. PMID:26309872

  14. Sextupole system for the correction of spherical aberration

    DOEpatents

    Crewe, A.V.; Kopf, D.A.

    In an electron beam device in which an electron beam is developed and then focused by a lens to a particular spot, there is provided a means for eliminating spherical aberration. A sextupole electromagnetic lens is positioned between two focusing lenses. The interaction of the sextupole with the beam compensates for spherical aberration. (GHT)

  15. Retinal image contrast obtained by a model eye with combined correction of chromatic and spherical aberrations

    PubMed Central

    Ohnuma, Kazuhiko; Kayanuma, Hiroyuki; Lawu, Tjundewo; Negishi, Kazuno; Yamaguchi, Takefumi; Noda, Toru

    2011-01-01

    Correcting spherical and chromatic aberrations in vitro in human eyes provides substantial visual acuity and contrast sensitivity improvements. We found the same improvement in the retinal images using a model eye with/without correction of longitudinal chromatic aberrations (LCAs) and spherical aberrations (SAs). The model eye included an intraocular lens (IOL) and artificial cornea with human ocular LCAs and average human SAs. The optotypes were illuminated using a D65 light source, and the images were obtained using two-dimensional luminance colorimeter. The contrast improvement from the SA correction was higher than the LCA correction, indicating the benefit of an aspheric achromatic IOL. PMID:21698008

  16. Correcting the wavefront aberration of membrane mirror based on liquid crystal spatial light modulator

    NASA Astrophysics Data System (ADS)

    Yang, Bin; Wei, Yin; Chen, Xinhua; Tang, Minxue

    2014-11-01

    Membrane mirror with flexible polymer film substrate is a new-concept ultra lightweight mirror for space applications. Compared with traditional mirrors, membrane mirror has the advantages of lightweight, folding and deployable, low cost and etc. Due to the surface shape of flexible membrane mirror is easy to deviate from the design surface shape, it will bring wavefront aberration to the optical system. In order to solve this problem, a method of membrane mirror wavefront aberration correction based on the liquid crystal spatial light modulator (LCSLM) will be studied in this paper. The wavefront aberration correction principle of LCSLM is described and the phase modulation property of a LCSLM is measured and analyzed firstly. Then the membrane mirror wavefront aberration correction system is designed and established according to the optical properties of a membrane mirror. The LCSLM and a Hartmann-Shack sensor are used as a wavefront corrector and a wavefront detector, respectively. The detected wavefront aberration is calculated and converted into voltage value on LCSLM for the mirror wavefront aberration correction by programming in Matlab. When in experiment, the wavefront aberration of a glass plane mirror with a diameter of 70 mm is measured and corrected for verifying the feasibility of the experiment system and the correctness of the program. The PV value and RMS value of distorted wavefront are reduced and near diffraction limited optical performance is achieved. On this basis, the wavefront aberration of the aperture center Φ25 mm in a membrane mirror with a diameter of 200 mm is corrected and the errors are analyzed. It provides a means of correcting the wavefront aberration of membrane mirror.

  17. Cationic surface reconstructions on cerium oxide nanocrystals: an aberration-corrected HRTEM study.

    PubMed

    Bhatta, Umananda M; Ross, Ian M; Sayle, Thi X T; Sayle, Dean C; Parker, Stephen C; Reid, David; Seal, Sudipta; Kumar, Amit; Möbus, Günter

    2012-01-24

    Instabilities of nanoscale ceria surface facets are examined on the atomic level. The electron beam and its induced atom migration are proposed as a readily available probe to emulate and quantify functional surface activity, which is crucial for, for example, catalytic performance. In situ phase contrast high-resolution transmission electron microscopy with spherical aberration correction is shown to be the ideal tool to analyze cationic reconstruction. Hydrothermally prepared ceria nanoparticles with particularly enhanced {100} surface exposure are explored. Experimental analysis of cationic reconstruction is supported by molecular dynamics simulations where the Madelung energy is shown to be directly related to the binding energy, which enables one to generate a visual representation of the distribution of "reactive" surface oxygen. PMID:22148265

  18. Resolving 45-pm-separated Si-Si atomic columns with an aberration-corrected STEM.

    PubMed

    Sawada, Hidetaka; Shimura, Naoki; Hosokawa, Fumio; Shibata, Naoya; Ikuhara, Yuichi

    2015-06-01

    Si-Si atomic columns separated by 45 pm were successfully resolved with a 300-kV aberration-corrected scanning transmission electron microscope (STEM) equipped with a cold-field emission gun. Using a sufficiently small Gaussian effective source size and a 0.4-eV energy spread at 300 kV, the focused electron probe on the specimen was simulated to be sub-50 pm. Image simulation showed that the present probe condition was sufficient to resolve 45 pm Si-Si dumbbells. A silicon crystalline specimen was observed from the [114] direction with a high-angle annular dark field STEM and the intensity profile showed 45 pm separation. A spot corresponding to (45 pm)(-1) was confirmed in the power spectrum of the Fourier transform. PMID:25825509

  19. Aberration corrected imaging of a carbon nanotube encapsulated Lindqvist Ion and correlation with Density Functional Theory

    NASA Astrophysics Data System (ADS)

    Sloan, J.; Bichoutskaia, E.; Liu, Z.; Kuganathan, N.; Faulques, E.; Suenaga, K.; Shannon, I. J.

    2012-07-01

    80 kV aberration-corrected transmission electron microscopy (AC-TEM) of discrete [W6O19]2- polyoxometalate ions mounted within double walled carbon nanotubes (DWNTs) allow high precision structural studies to be performed. W atom column separations within the octahedral W6 tungsten template can be visualized with sufficient clarity that correlation with full-scale density functional theory (DFT) can be achieved. Calculations performed on the gas phase and DWNT-mounted [W6O19]2- anions show good agreement, in the latter case, with measured separations between pairs of W2 atom columns imaged within equatorial WO6 octahedra and single W atoms within axial WO6 octahedra. Structural data from the tilted chiral encapsulating DWNT was also determined simultaneously with the anion structural measurements, allowing the nanotube conformation to be addressed in the DFT calculations.

  20. Adaptive Optics Analysis of Visual Benefit with Higher-order Aberrations Correction of Human Eye - Poster Paper

    NASA Astrophysics Data System (ADS)

    Xue, Lixia; Dai, Yun; Rao, Xuejun; Wang, Cheng; Hu, Yiyun; Liu, Qian; Jiang, Wenhan

    2008-01-01

    Higher-order aberrations correction can improve visual performance of human eye to some extent. To evaluate how much visual benefit can be obtained with higher-order aberrations correction we developed an adaptive optics vision simulator (AOVS). Dynamic real time optimized modal compensation was used to implement various customized higher-order ocular aberrations correction strategies. The experimental results indicate that higher-order aberrations correction can improve visual performance of human eye comparing with only lower-order aberration correction but the improvement degree and higher-order aberration correction strategy are different from each individual. Some subjects can acquire great visual benefit when higher-order aberrations were corrected but some subjects acquire little visual benefit even though all higher-order aberrations were corrected. Therefore, relative to general lower-order aberrations correction strategy, customized higher-order aberrations correction strategy is needed to obtain optimal visual improvement for each individual. AOVS provides an effective tool for higher-order ocular aberrations optometry for customized ocular aberrations correction.

  1. Correction of chromatic aberrations at television registration of image through protective viewing systems

    NASA Astrophysics Data System (ADS)

    Kulyas, Oleg L.; Nikitin, Konstantin A.

    2016-03-01

    Ways of chromatic aberration in images are examined and analyzed which are generated at television supervision through protective glasses of a considerable thickness. The results of experimental check up of the given method of correction is introduced and described.

  2. An SLM-based Shack-Hartmann wavefront sensor for aberration correction in optical tweezers

    NASA Astrophysics Data System (ADS)

    Bowman, Richard W.; Wright, Amanda J.; Padgett, Miles J.

    2010-12-01

    Holographic optical tweezers allow the creation of multiple optical traps in 3D configurations through the use of dynamic diffractive optical elements called spatial light modulators (SLMs). We show that, in addition to controlling traps, the SLM in a holographic tweezers system can be both the principal element of a wavefront sensor and the corrective element in a closed-loop adaptive optics system. This means that aberrations in such systems can be estimated and corrected without altering the experimental setup. Aberrations are estimated using the Shack-Hartmann method, where an array of spots is projected into the sample plane and the distortion of this array is used to recover the aberration. The system can recover aberrations of up to ten wavelengths peak-peak, and is sensitive to aberrations much smaller than a wavelength. The spot pattern could also be analysed by eye, as a tool for aligning the system.

  3. Aberration corrected aspheric grating for far ultraviolet spectrographs - Conventional approach

    NASA Technical Reports Server (NTRS)

    Content, David; Trout, Catherine; Davila, Pam; Wilson, Mark

    1991-01-01

    Two approaches to reducing optical aberrations of concave grating spectrographs have been used, holographically controlling the groove curvature and spacing and reshaping the optical substrate while ruling the grooves conventionally. The latter approach, slightly deforming an ellipsoidal grating blank, can lead to diffraction-limited performance at a single FUV wavelength. When such a grating is used in a slitted Rowland circle spectrograph, the result is an extremely efficient spectrograph with spectral resolving power of about 30,000 and low astigmatism. Optical fabrication technology has advanced to the point where these exotic surface gratings are becoming practical.

  4. Temporal integration property of stereopsis after higher-order aberration correction

    PubMed Central

    Kang, Jian; Dai, Yun; Zhang, Yudong

    2015-01-01

    Based on a binocular adaptive optics visual simulator, we investigated the effect of higher-order aberration correction on the temporal integration property of stereopsis. Stereo threshold for line stimuli, viewed in 550nm monochromatic light, was measured as a function of exposure duration, with higher-order aberrations uncorrected, binocularly corrected or monocularly corrected. Under all optical conditions, stereo threshold decreased with increasing exposure duration until a steady-state threshold was reached. The critical duration was determined by a quadratic summation model and the high goodness of fit suggested this model was reasonable. For normal subjects, the slope for stereo threshold versus exposure duration was about −0.5 on logarithmic coordinates, and the critical duration was about 200 ms. Both the slope and the critical duration were independent of the optical condition of the eye, showing no significant effect of higher-order aberration correction on the temporal integration property of stereopsis. PMID:26601010

  5. Temporal integration property of stereopsis after higher-order aberration correction.

    PubMed

    Kang, Jian; Dai, Yun; Zhang, Yudong

    2015-11-01

    Based on a binocular adaptive optics visual simulator, we investigated the effect of higher-order aberration correction on the temporal integration property of stereopsis. Stereo threshold for line stimuli, viewed in 550nm monochromatic light, was measured as a function of exposure duration, with higher-order aberrations uncorrected, binocularly corrected or monocularly corrected. Under all optical conditions, stereo threshold decreased with increasing exposure duration until a steady-state threshold was reached. The critical duration was determined by a quadratic summation model and the high goodness of fit suggested this model was reasonable. For normal subjects, the slope for stereo threshold versus exposure duration was about -0.5 on logarithmic coordinates, and the critical duration was about 200 ms. Both the slope and the critical duration were independent of the optical condition of the eye, showing no significant effect of higher-order aberration correction on the temporal integration property of stereopsis. PMID:26601010

  6. Surgical correction of an aberrant right subclavian artery in a dog

    PubMed Central

    Yoon, Hun-Young; Jeong, Soon-wuk

    2011-01-01

    A diagnosis of an aberrant right subclavian artery was made in a 3-month-old Boston terrier. Surgical correction was performed after confirming adequate collateral circulation. Reports of surgical correction and evaluation of the perioperative thoracic limb blood pressure are rare in dogs. PMID:22467968

  7. Effect of correction of aberration dynamics on chaos in human ocular accommodation.

    PubMed

    Hampson, Karen M; Cufflin, Matthew P; Mallen, Edward A H

    2013-11-15

    We used adaptive optics to determine the effect of monochromatic aberration dynamics on the level of chaos in the accommodation control system. Four participants viewed a stationary target while the dynamics of their aberrations were either left uncorrected, defocus was corrected, or all aberrations except defocus were corrected. Chaos theory analysis was used to discern changes in the accommodative microfluctuations. We found a statistically significant reduction in the chaotic nature of the accommodation microfluctuations during correction of defocus, but not when all aberrations except defocus were corrected. The Lyapunov exponent decreased from 0.71 ± 0.07 D/s (baseline) to 0.55 ± 0.03 D/s (correction of defocus fluctuations). As the reduction of chaos in physiological signals is indicative of stress to the system, the results indicate that for the participants included in this study, fluctuations in defocus have a more profound effect than those of the other aberrations. There were no changes in the power spectrum between experimental conditions. Hence chaos theory analysis is a more subtle marker of changes in the accommodation control system and will be of value in the study of myopia onset and progression. PMID:24322122

  8. Modeling of Optical Aberration Correction using a Liquid Crystal Device

    NASA Technical Reports Server (NTRS)

    Xinghua, Wang; Bin, Wang; McManamon, Paul F.; Pouch, John J.; Miranda, Felix A.

    2006-01-01

    Gruneisen (sup 1-3), has shown that small, light weight, liquid crystal based devices can correct for the optical distortion caused by an imperfect primary mirror in a telescope and has discussed the efficiency of this correction. In this paper we expand on that work and propose a semi-analytical approach for quantifying the efficiency of a liquid crystal based wavefront corrector for this application.

  9. High-resolution adaptive optics scanning laser ophthalmoscope with dual deformable mirrors for large aberration correction

    SciTech Connect

    Chen, D; Jones, S M; Silva, D A; Olivier, S S

    2007-01-25

    Scanning laser ophthalmoscopes with adaptive optics (AOSLO) have been shown previously to provide a noninvasive, cellular-scale view of the living human retina. However, the clinical utility of these systems has been limited by the available deformable mirror technology. In this paper, we demonstrate that the use of dual deformable mirrors can effectively compensate large aberrations in the human retina, making the AOSLO system a viable, non-invasive, high-resolution imaging tool for clinical diagnostics. We used a bimorph deformable mirror to correct low-order aberrations with relatively large amplitudes. The bimorph mirror is manufactured by Aoptix, Inc. with 37 elements and 18 {micro}m stroke in a 10 mm aperture. We used a MEMS deformable mirror to correct high-order aberrations with lower amplitudes. The MEMS mirror is manufactured by Boston Micromachine, Inc with 144 elements and 1.5 {micro}m stroke in a 3 mm aperture. We have achieved near diffraction-limited retina images using the dual deformable mirrors to correct large aberrations up to {+-} 3D of defocus and {+-} 3D of cylindrical aberrations with test subjects. This increases the range of spectacle corrections by the AO systems by a factor of 10, which is crucial for use in the clinical environment. This ability for large phase compensation can eliminate accurate refractive error fitting for the patients, which greatly improves the system ease of use and efficiency in the clinical environment.

  10. Polyvinylidene fluoride molecules in nanofibers, imaged at atomic scale by aberration corrected electron microscopy

    NASA Astrophysics Data System (ADS)

    Lolla, Dinesh; Gorse, Joseph; Kisielowski, Christian; Miao, Jiayuan; Taylor, Philip L.; Chase, George G.; Reneker, Darrell H.

    2015-12-01

    Atomic scale features of polyvinylidene fluoride molecules (PVDF) were observed with aberration corrected transmission electron microscopy. Thin, self-supporting PVDF nanofibers were used to create images that show conformations and relative locations of atoms in segments of polymer molecules, particularly segments near the surface of the nanofiber. Rows of CF2 atomic groups, at 0.25 nm intervals, which marked the paths of segments of the PVDF molecules, were seen. The fact that an electron microscope image of a segment of a PVDF molecule depended upon the particular azimuthal direction, along which the segment was viewed, enabled observation of twist around the molecular axis. The 0.2 nm side-by-side distance between the two fluorine atoms attached to the same carbon atom was clearly resolved. Morphological and chemical changes produced by energetic electrons, ranging from no change to fiber scission, over many orders of magnitude of electrons per unit area, promise quantitative new insights into radiation chemistry. Relative movements of segments of molecules were observed. Promising synergism between high resolution electron microscopy and molecular dynamic modeling was demonstrated. This paper is at the threshold of growing usefulness of electron microscopy to the science and engineering of polymer and other molecules.Atomic scale features of polyvinylidene fluoride molecules (PVDF) were observed with aberration corrected transmission electron microscopy. Thin, self-supporting PVDF nanofibers were used to create images that show conformations and relative locations of atoms in segments of polymer molecules, particularly segments near the surface of the nanofiber. Rows of CF2 atomic groups, at 0.25 nm intervals, which marked the paths of segments of the PVDF molecules, were seen. The fact that an electron microscope image of a segment of a PVDF molecule depended upon the particular azimuthal direction, along which the segment was viewed, enabled observation of

  11. Aberration corrected environmental STEM (AC ESTEM) for dynamic in-situ gas reaction studies of nanoparticle catalysts

    NASA Astrophysics Data System (ADS)

    Boyes, E. D.; Gai, P. L.

    2014-06-01

    Environmental scanning transmission electron microscopy (ESTEM) with aberration correction (AC) has recently been added to the capabilities of the more established ETEM for analysis of heterogeneous nanoparticle based catalysts. It has helped to reveal the importance and potentially unique properties of individual atoms as active sites in their own right as well as pathways between established nanoparticles. A new capability is introduced for dynamic in-situ experiments under controlled conditions of specimen temperature and gas environment related to real world conditions pertinent to a range of industrial and societal priorities for new and improved chemical processes, materials, fuels, pharmaceutical products and processes, and in control or remediation of environmental emissions.

  12. Holographic Adaptive Laser Optics System (HALOS): Fast, Autonomous Aberration Correction

    NASA Astrophysics Data System (ADS)

    Andersen, G.; MacDonald, K.; Gelsinger-Austin, P.

    2013-09-01

    We present an adaptive optics system which uses a multiplexed hologram to deconvolve the phase aberrations in an input beam. This wavefront characterization is extremely fast as it is based on simple measurements of the intensity of focal spots and does not require any computations. Furthermore, the system does not require a computer in the loop and is thus much cheaper, less complex and more robust as well. A fully functional, closed-loop prototype incorporating a 32-element MEMS mirror has been constructed. The unit has a footprint no larger than a laptop but runs at a bandwidth of 100kHz over an order of magnitude faster than comparable, conventional systems occupying a significantly larger volume. Additionally, since the sensing is based on parallel, all-optical processing, the speed is independent of actuator number running at the same bandwidth for one actuator as for a million. We are developing the HALOS technology with a view towards next-generation surveillance systems for extreme adaptive optics applications. These include imaging, lidar and free-space optical communications for unmanned aerial vehicles and SSA. The small volume is ideal for UAVs, while the high speed and high resolution will be of great benefit to the ground-based observation of space-based objects.

  13. Aberration and boresight error correction for conformal aircraft windows using the inner window surface and tilted fixed correctors.

    PubMed

    Zhao, Chunzhu; Cui, Qingfeng; Mao, Shan

    2016-04-01

    A static solution to aberrations and boresight error for tilted conformal aircraft windows at different look angles is reported. The solution uses the inner window surface to correct the window aberrations at a 0° look angle and uses fixed correctors behind the window to correct the residual window aberrations at other look angles. Then, the boresight error for the window at different look angles is corrected by tilting the fixed correctors. The principle of the solution is discussed, and a design example shows that the solution is effective in correcting the aberrations and boresight error for a tilted conformal aircraft window at different look angles. PMID:27139665

  14. Energy-based adaptive focusing of waves: application to noninvasive aberration correction of ultrasonic wavefields

    PubMed Central

    Herbert, Eric; Pernot, Mathieu; Montaldo, Gabriel; Fink, Mathias; Tanter, Mickael

    2009-01-01

    An aberration correction method based on the maximization of the wave intensity at the focus of an emitting array is presented. The potential of this new adaptive focusing technique is investigated for ultrasonic focusing in biological tissues. The acoustic intensity is maximized non invasively through the direct measurement or indirect estimation of the beam energy at the focus for a series of spatially coded emissions. For ultrasonic waves, the acoustic energy at the desired focus can be indirectly estimated from the local displacements induced in tissues by the ultrasonic radiation force of the beam. Based on the measurement of these displacements, this method allows the precise estimation of the phase and amplitude aberrations and consequently the correction of aberrations along the beam travel path. The proof of concept is first performed experimentally using a large therapeutic array with strong electronic phase aberrations (up to 2π). Displacements induced by the ultrasonic radiation force at the desired focus are indirectly estimated using the time shift of backscattered echoes recorded on the array. The phase estimation is deduced accurately using a direct inversion algorithm which reduces the standard deviation of the phase distribution from σ = 1.89 before correction to σ = 0.53 following correction. The corrected beam focusing quality is verified using a needle hydrophone. The peak intensity obtained through the aberrator is found to be −7.69 dB below the reference intensity obtained without any aberration. Using the phase correction, a sharp focus is restored through the aberrator with a relative peak intensity of −0.89 dB. The technique is tested experimentally using a linear transmit/receive array through a real aberrating layer. The array is used to automatically correct its beam quality, as it both generates the radiation force with coded excitations and indirectly estimates the acoustic intensity at the focus with speckle tracking. This

  15. Adaptive temporal and wavefront aberration correction for ultrafast lasers with a membrane deformable mirror

    NASA Astrophysics Data System (ADS)

    Sherman, Leah Bruner

    Two adaptive optic systems for correction of either temporal phase error and wavefront errors for ultrafast pulses are demonstrated. These systems consists of a computer controlled micromachined membrane deformable mirror (MMDM) and a genetic learning algorithm (GA). Nonlinear excitation such as two-photon fluorescence or second harmonic generation are used as feedback to the GA to determine the appropriate correction to apply to the mirror. Two MMDMs are used, a 30 x 8 mm, 39 actuator linear MMDM for pulse-shaping applications and a 15 mm diameter, 37 actuator wavefront MMDM. Linear pre-compensation of self-phase modulation (SPM) was experimentally demonstrated utilizing the linear MMDM in a linear pulse-shaper for ultrafast pulses. The nonlinear nature of SPM makes arbitrary polynomial compensation necessary. Pre-compensation of SPM generated in an optical fiber by a 10 fs pulse reduced the pulse from 30fs to 20fs. We demonstrates adaptive correction with the wavefront MMDM by corrected for coma and astigmatism in a reflective multiphoton scanning microscope. An f1, parabola produces a very tight focus with no aberration when it is perfectly aligned. However, when beam scanning is used for two-dimensional imaging the image is severely aberrated. The MMDM and the GA are able to find the best possible wavefront for aberration correction for each scanning position. The horizontal scanning range was increased from 60 mum without the adaptive correction to 170 mum, ≈3 times the uncorrected scanning range, and the vertical scanning range was increased by a comparable amount. This resulted in an increase in scanning area of 9 times. The wavefront MMDM was also used for adaptive correction of spherical aberration from focusing from air, deep into a water-based sample. This depth-based aberration results from an index of refraction mismatch between the sample and the immersion medium of the objective and occurs regardless of beam scanning or sample scanning. By

  16. High performance Czerny-Turner imaging spectrometer with aberrations corrected by tilted lenses

    NASA Astrophysics Data System (ADS)

    Zhong, Xing; Zhang, Yuan; Jin, Guang

    2015-03-01

    The design of the high performance imaging spectrometer using low-cost plane grating is researched in this paper. In order to correct the aberrations well, under the guidance of the vector aberration theory, the modification of Czerny-Turner system with inserted tilt lenses is proposed. The novel design of a short-wave infrared imaging spectrometer working at between wavelengths of 1-2.5 μm is shown as an example, whose numerical aperture achieves 0.15 in image space. The aberrations are corrected well and the Modulation Transfer Function (MTF) performance is the same as the convex gratings systems. The smiles and keystones of the spectral image are acceptable. Advantages of the proposed design with a plane grating are obviously that the diffraction efficiency is high while the cost is very low.

  17. The correction of aberrations computed in the aperture plane of multifrequency microwave radiometer antennas

    NASA Technical Reports Server (NTRS)

    Schmidt, R. F.

    1984-01-01

    An analytical/numerical approach to identifying and correcting the aberrations introduced by a general displacement of the feed from the focal point of a single offset paraboloid antenna used in deployable radiometer systems is developed. A 15 meter reflector with 18 meter focal length is assumed for the analysis, which considers far field radiation pattern quality, focal region fields, and aberrations appearing in the aperture plane. The latter are obtained by ray tracing in the transmit mode and are expressed in terms of optical notation. Attention is given to the physical restraints imposed on corrective elements by real microwave systems and to the intermediate near field aspects of the problem in three dimensions. The subject of wave fronts and caustics in the receive mode is introduced for comparative purposes. Several specific examples are given for aberration reduction at eight beamwidths of scan at a frequency of 1.414 GHz.

  18. A lateral chromatic aberration correction system for ultrahigh-definition color video camera

    NASA Astrophysics Data System (ADS)

    Yamashita, Takayuki; Shimamoto, Hiroshi; Funatsu, Ryohei; Mitani, Kohji; Nojiri, Yuji

    2006-02-01

    We have developed color camera for an 8k x 4k-pixel ultrahigh-definition video system, which is called Super Hi- Vision, with a 5x zoom lens and a signal-processing system incorporating a function for real-time lateral chromatic aberration correction. The chromatic aberration of the lens degrades color image resolution. So in order to develop a compact zoom lens consistent with ultrahigh-resolution characteristics, we incorporated a real-time correction function in the signal-processing system. The signal-processing system has eight memory tables to store the correction data at eight focal length points on the blue and red channels. When the focal length data is inputted from the lens control units, the relevant correction data are interpolated from two of eights correction data tables. This system performs geometrical conversion on both channels using this correction data. This paper describes that the correction function can successfully reduce the lateral chromatic aberration, to an amount small enough to ensure the desired image resolution was achieved over the entire range of the lens in real time.

  19. Polyvinylidene fluoride molecules in nanofibers, imaged at atomic scale by aberration corrected electron microscopy.

    PubMed

    Lolla, Dinesh; Gorse, Joseph; Kisielowski, Christian; Miao, Jiayuan; Taylor, Philip L; Chase, George G; Reneker, Darrell H

    2016-01-01

    Atomic scale features of polyvinylidene fluoride molecules (PVDF) were observed with aberration corrected transmission electron microscopy. Thin, self-supporting PVDF nanofibers were used to create images that show conformations and relative locations of atoms in segments of polymer molecules, particularly segments near the surface of the nanofiber. Rows of CF2 atomic groups, at 0.25 nm intervals, which marked the paths of segments of the PVDF molecules, were seen. The fact that an electron microscope image of a segment of a PVDF molecule depended upon the particular azimuthal direction, along which the segment was viewed, enabled observation of twist around the molecular axis. The 0.2 nm side-by-side distance between the two fluorine atoms attached to the same carbon atom was clearly resolved. Morphological and chemical changes produced by energetic electrons, ranging from no change to fiber scission, over many orders of magnitude of electrons per unit area, promise quantitative new insights into radiation chemistry. Relative movements of segments of molecules were observed. Promising synergism between high resolution electron microscopy and molecular dynamic modeling was demonstrated. This paper is at the threshold of growing usefulness of electron microscopy to the science and engineering of polymer and other molecules. PMID:26369731

  20. Non-common path aberration correction in an adaptive optics scanning ophthalmoscope

    PubMed Central

    Sulai, Yusufu N.; Dubra, Alfredo

    2014-01-01

    The correction of non-common path aberrations (NCPAs) between the imaging and wavefront sensing channel in a confocal scanning adaptive optics ophthalmoscope is demonstrated. NCPA correction is achieved by maximizing an image sharpness metric while the confocal detection aperture is temporarily removed, effectively minimizing the monochromatic aberrations in the illumination path of the imaging channel. Comparison of NCPA estimated using zonal and modal orthogonal wavefront corrector bases provided wavefronts that differ by ~λ/20 in root-mean-squared (~λ/30 standard deviation). Sequential insertion of a cylindrical lens in the illumination and light collection paths of the imaging channel was used to compare image resolution after changing the wavefront correction to maximize image sharpness and intensity metrics. Finally, the NCPA correction was incorporated into the closed-loop adaptive optics control by biasing the wavefront sensor signals without reducing its bandwidth. PMID:25401020

  1. Aberration-Corrected Stem of Q-Rich Separates from the Saratov (L4) Meteorite

    NASA Astrophysics Data System (ADS)

    Stroud, R. M.; Chisholm, M. F.; Amari, A.; Matsuda, J.

    2012-09-01

    TEM and aberration-corrected STEM analysis of two nanodiamond- and SiC-free Saratov (L4) separates, AJ (most Q-rich) and AI (Q-rich), show that the carrier is porous carbon consisting of nanoscale graphene platelets.

  2. Device and method for creating Gaussian aberration-corrected electron beams

    DOEpatents

    McMorran, Benjamin; Linck, Martin

    2016-01-19

    Electron beam phase gratings have phase profiles that produce a diffracted beam having a Gaussian or other selected intensity profile. Phase profiles can also be selected to correct or compensate electron lens aberrations. Typically, a low diffraction order produces a suitable phase profile, and other orders are discarded.

  3. Correcting spherical aberrations in confocal light sheet microscopy: a theoretical study.

    PubMed

    Silvestri, L; Sacconi, L; Pavone, F S

    2014-07-01

    In the last years, fluorescence light sheet microscopy has attracted an increasing interest among the microscopy community. One of the most promising applications of this technique is the reconstruction of macroscopic biological specimens with microscopic resolution, without physical sectioning. To this aim, light sheet microscopy is combined with clearing protocols based on refractive index matching, which render the tissue transparent. However, these protocols lead to a huge drop in the fluorescence signal, limiting their practical applicability. The reduction of signal to background ratio is commonly ascribed to chemical degradation of the fluorophores by the organic solvents used for clearing. This view however completely neglects another important factor of contrast loss, i.e., optical aberrations. In fact, commercially available objectives suitable for light sheet microscopy are not designed for the refractive index of the clearing solutions, and this mismatch introduces severe spherical aberration. Here we simulated the aberrated point spread function (PSF) of a light sheet microscope with confocal slit detection. We investigated the variation of the PSF as a function of objective numerical aperture (NA) and of imaging depth inside the clearing solution. We also explored the possibility of correcting such spherical aberration by introducing extra optical devices in the detection path. By correcting up to the second order spherical aberration, a quasi-diffraction-limited regime can be recovered, and image quality is restored. PMID:24395714

  4. Comparison of spherical aberration and small pupil profiles in improving depth of focus for presbyopic corrections

    PubMed Central

    Hickenbotham, Adam; Tiruveedhula, Pavan; Roorda, Austin

    2012-01-01

    PURPOSE To compare the validity and effectiveness of 2 methods for expanding depth of focus to correct for presbyopia; that is, induction of spherical aberration and small pupil apertures. SETTING University of California, Berkeley, California, USA. DESIGN Comparative case series. METHODS A random 4-alternative forced-choice acuity task was performed. Visual performance and depth of focus was compared using adaptive optics–corrected distance visual acuity (CDVA) values and mean visual acuity over a 3.0 diopter (D) range of defocus using the following 3 adaptive optics–corrected profiles: 2.0 mm pupil, 5.0 mm pupil, and 5.0 mm pupil with −0.274 µm of spherical aberration. RESULTS The study enrolled 13 subjects. The 5.0 mm pupil profile had a CDVA of −0.218 logMAR and a mean visual acuity through focus of 0.156 logMAR. The 2.0 mm pupil profile had a worse CDVA (0.012 logMAR) but an improved mean visual acuity (0.061 logMAR). The 5.0 mm pupil profile with −0.274 µm of spherical aberration measured a CDVA of −0.082 logMAR and a mean visual acuity 0.103 logMAR. CONCLUSIONS The spherical aberration and small-pupil profiles improved the mean visual acuity across a 3.0 D range of defocus but resulted in decreased CDVA at the plane of best focus in comparison to an adaptive optics–corrected 5.0 mm pupil. Small-pupil profiles are a better choice than spherical aberration profiles for presbyopic corrections due to expected accuracy, predictability, and patient satisfaction. PMID:23031641

  5. Adaptive, spatially-varying aberration correction for real-time holographic projectors.

    PubMed

    Kaczorowski, Andrzej; Gordon, George S D; Wilkinson, Timothy D

    2016-07-11

    A method of generating an aberration- and distortion-free wide-angle holographically projected image in real time is presented. The target projector is first calibrated using an automated adaptive-optical mechanism. The calibration parameters are then fed into the hologram generation program, which applies a novel piece-wise aberration correction algorithm. The method is found to offer hologram generation times up to three orders of magnitude faster than the standard method. A projection of an aberration- and distortion-free image with a field of view of 90x45 degrees is demonstrated. The implementation on a mid-range GPU achieves high resolution at a frame rate up to 12fps. The presented methods are automated and can be performed on any holographic projector. PMID:27410846

  6. Binocular visual acuity for the correction of spherical aberration in polychromatic and monochromatic light.

    PubMed

    Schwarz, Christina; Cánovas, Carmen; Manzanera, Silvestre; Weeber, Henk; Prieto, Pedro M; Piers, Patricia; Artal, Pablo

    2014-01-01

    Correction of spherical (SA) and longitudinal chromatic aberrations (LCA) significantly improves monocular visual acuity (VA). In this work, the visual effect of SA correction in polychromatic and monochromatic light on binocular visual performance is investigated. A liquid crystal based binocular adaptive optics visual analyzer capable of operating in polychromatic light is employed in this study. Binocular VA improves when SA is corrected and LCA effects are reduced separately and in combination, resulting in the highest value for SA correction in monochromatic light. However, the binocular summation ratio is highest for the baseline condition of uncorrected SA in polychromatic light. Although SA correction in monochromatic light has a greater impact monocularly than binocularly, bilateral correction of both SA and LCA may further improve binocular spatial visual acuity which may support the use of aspheric-achromatic ophthalmic devices, in particular, intraocular lenses (IOLs). PMID:24520150

  7. Simultaneous and independent adaptive correction of spherical and chromatic aberration using an electron mirror and lens combination.

    PubMed

    Fitzgerald, J P S; Word, R C; Könenkamp, R

    2012-04-01

    We present a theoretical analysis of an electrostatic triode mirror combined with an einzel lens for the correction of spherical and chromatic aberration. We show that this device adaptively corrects spherical and chromatic aberration simultaneously and independently. Chromatic aberration can be compensated over a relative range of -38% to +100%, and spherical aberration over ±100% range. We compare the analytic calculation with a numerical simulation and show that the two descriptions agree to within 5% in the relevant operating regime of the device. PMID:22459116

  8. Apparatus for and method of correcting for aberrations in a light beam

    DOEpatents

    Sawicki, R.H.

    1996-09-17

    A technique for adjustably correcting for aberrations in a light beam is disclosed herein. This technique utilizes first means which defines a flat, circular light reflecting surface having opposite reinforced circumferential edges and a central post and which is resiliently distortable, to a limited extent, into different concave and/or convex curvatures, which may be Gaussian-like, about the central axis, and second means acting on the first means for adjustably distorting the light reflecting surface into a particular selected one of the different curvatures depending upon the aberrations to be corrected for and for fixedly maintaining the curvature selected. In the embodiment disclosed, the light reflecting surface is adjustably distorted into the selected curvature by application of particular axial moments to the central post on the opposite side from the light reflecting surface and lateral moments to the circumference of the reflecting surface. 8 figs.

  9. Apparatus for and method of correcting for aberrations in a light beam

    DOEpatents

    Sawicki, Richard H.

    1996-01-01

    A technique for adjustably correcting for aberrations in a light beam is disclosed herein. This technique utilizes first means which defines a flat, circular light reflecting surface having opposite reinforced circumferential edges and a central post and which is resiliently distortable, to a limited extent, into different concave and/or convex curvatures, which may be Gaussian-like, about the central axis, and second means acting on the first means for adjustably distorting the light reflecting surface into a particular selected one of the different curvatures depending upon the aberrations to be corrected for and for fixedly maintaining the curvature selected. In the embodiment disclosed, the light reflecting surface is adjustably distorted into the selected curvature by application of particular axial moments to the central post on the opposite side from the light reflecting surface and lateral moments to the circumference of the reflecting surface.

  10. Effects of higher-order aberration correction on stereopsis at different viewing durations

    NASA Astrophysics Data System (ADS)

    Kang, Jian; Xiao, Fei; Zhao, Junlei; Zhao, Haoxin; Hu, Yiyun; Tang, Guomao; Dai, Yun; Zhang, Yudong

    2015-07-01

    To better understand how the eye's optics affects stereopsis, we measured stereoacuity before and after higher-order aberration (HOA) correction with a binocular adaptive optics visual simulator. The HOAs were corrected either binocularly or monocularly in the better eye (the eye with better contrast sensitivity). A two-line stereo pattern served as the visual stimulus. Stereo thresholds at different viewing durations were obtained with the psychophysical method of constant stimuli. Binocular HOA correction led to significant improvement in stereoacuity. However, better eye HOA correction could bring either a bad degradation or a slight improvement in stereoacuity. As viewing duration increased, the stereo benefit approached the level of 1.0 for both binocular and better eye correction, suggesting that long viewing durations might weaken the effects of the eye's optical quality on stereopsis.

  11. Effects of higher-order aberration correction on stereopsis at different viewing durations.

    PubMed

    Kang, Jian; Xiao, Fei; Zhao, Junlei; Zhao, Haoxin; Hu, Yiyun; Tang, Guomao; Dai, Yun; Zhang, Yudong

    2015-07-01

    To better understand how the eye's optics affects stereopsis, we measured stereoacuity before and after higher-order aberration (HOA) correction with a binocular adaptive optics visual simulator. The HOAs were corrected either binocularly or monocularly in the better eye (the eye with better contrast sensitivity). A two-line stereo pattern served as the visual stimulus. Stereo thresholds at different viewing durations were obtained with the psychophysical method of constant stimuli. Binocular HOA correction led to significant improvement in stereoacuity. However, better eye HOA correction could bring either a bad degradation or a slight improvement in stereoacuity. As viewing duration increased, the stereo benefit approached the level of 1.0 for both binocular and better eye correction, suggesting that long viewing durations might weaken the effects of the eye's optical quality on stereopsis. PMID:26172611

  12. Lowered threshold energy for femtosecond laser induced optical breakdown in a water based eye model by aberration correction with adaptive optics.

    PubMed

    Hansen, Anja; Géneaux, Romain; Günther, Axel; Krüger, Alexander; Ripken, Tammo

    2013-06-01

    In femtosecond laser ophthalmic surgery tissue dissection is achieved by photodisruption based on laser induced optical breakdown. In order to minimize collateral damage to the eye laser surgery systems should be optimized towards the lowest possible energy threshold for photodisruption. However, optical aberrations of the eye and the laser system distort the irradiance distribution from an ideal profile which causes a rise in breakdown threshold energy even if great care is taken to minimize the aberrations of the system during design and alignment. In this study we used a water chamber with an achromatic focusing lens and a scattering sample as eye model and determined breakdown threshold in single pulse plasma transmission loss measurements. Due to aberrations, the precise lower limit for breakdown threshold irradiance in water is still unknown. Here we show that the threshold energy can be substantially reduced when using adaptive optics to improve the irradiance distribution by spatial beam shaping. We found that for initial aberrations with a root-mean-square wave front error of only one third of the wavelength the threshold energy can still be reduced by a factor of three if the aberrations are corrected to the diffraction limit by adaptive optics. The transmitted pulse energy is reduced by 17% at twice the threshold. Furthermore, the gas bubble motions after breakdown for pulse trains at 5 kilohertz repetition rate show a more transverse direction in the corrected case compared to the more spherical distribution without correction. Our results demonstrate how both applied and transmitted pulse energy could be reduced during ophthalmic surgery when correcting for aberrations. As a consequence, the risk of retinal damage by transmitted energy and the extent of collateral damage to the focal volume could be minimized accordingly when using adaptive optics in fs-laser surgery. PMID:23761849

  13. Lowered threshold energy for femtosecond laser induced optical breakdown in a water based eye model by aberration correction with adaptive optics

    PubMed Central

    Hansen, Anja; Géneaux, Romain; Günther, Axel; Krüger, Alexander; Ripken, Tammo

    2013-01-01

    In femtosecond laser ophthalmic surgery tissue dissection is achieved by photodisruption based on laser induced optical breakdown. In order to minimize collateral damage to the eye laser surgery systems should be optimized towards the lowest possible energy threshold for photodisruption. However, optical aberrations of the eye and the laser system distort the irradiance distribution from an ideal profile which causes a rise in breakdown threshold energy even if great care is taken to minimize the aberrations of the system during design and alignment. In this study we used a water chamber with an achromatic focusing lens and a scattering sample as eye model and determined breakdown threshold in single pulse plasma transmission loss measurements. Due to aberrations, the precise lower limit for breakdown threshold irradiance in water is still unknown. Here we show that the threshold energy can be substantially reduced when using adaptive optics to improve the irradiance distribution by spatial beam shaping. We found that for initial aberrations with a root-mean-square wave front error of only one third of the wavelength the threshold energy can still be reduced by a factor of three if the aberrations are corrected to the diffraction limit by adaptive optics. The transmitted pulse energy is reduced by 17% at twice the threshold. Furthermore, the gas bubble motions after breakdown for pulse trains at 5 kilohertz repetition rate show a more transverse direction in the corrected case compared to the more spherical distribution without correction. Our results demonstrate how both applied and transmitted pulse energy could be reduced during ophthalmic surgery when correcting for aberrations. As a consequence, the risk of retinal damage by transmitted energy and the extent of collateral damage to the focal volume could be minimized accordingly when using adaptive optics in fs-laser surgery. PMID:23761849

  14. Aberrations of a facet-type transmission grating for cosmic x-ray and XUV spectroscopy.

    PubMed

    Beuermann, K P; Bräuninger, H; Trümper, J

    1978-08-01

    The aberrations of various types of curved constant-period transmission gratings are discussed, using Fermat's principle. We show that optimal performance is achieved with a grating assembled from individual facets which form a nonclosed surface. For this geometry, primary coma and astigmatism are proportional to the facet size and, hence, may be adapted to the angular resolution of a Wolter-type telescope. PMID:20203778

  15. Optimizing wavefront-guided corrections for highly aberrated eyes in the presence of registration uncertainty

    PubMed Central

    Shi, Yue; Queener, Hope M.; Marsack, Jason D.; Ravikumar, Ayeswarya; Bedell, Harold E.; Applegate, Raymond A.

    2013-01-01

    Dynamic registration uncertainty of a wavefront-guided correction with respect to underlying wavefront error (WFE) inevitably decreases retinal image quality. A partial correction may improve average retinal image quality and visual acuity in the presence of registration uncertainties. The purpose of this paper is to (a) develop an algorithm to optimize wavefront-guided correction that improves visual acuity given registration uncertainty and (b) test the hypothesis that these corrections provide improved visual performance in the presence of these uncertainties as compared to a full-magnitude correction or a correction by Guirao, Cox, and Williams (2002). A stochastic parallel gradient descent (SPGD) algorithm was used to optimize the partial-magnitude correction for three keratoconic eyes based on measured scleral contact lens movement. Given its high correlation with logMAR acuity, the retinal image quality metric log visual Strehl was used as a predictor of visual acuity. Predicted values of visual acuity with the optimized corrections were validated by regressing measured acuity loss against predicted loss. Measured loss was obtained from normal subjects viewing acuity charts that were degraded by the residual aberrations generated by the movement of the full-magnitude correction, the correction by Guirao, and optimized SPGD correction. Partial-magnitude corrections optimized with an SPGD algorithm provide at least one line improvement of average visual acuity over the full magnitude and the correction by Guirao given the registration uncertainty. This study demonstrates that it is possible to improve the average visual acuity by optimizing wavefront-guided correction in the presence of registration uncertainty. PMID:23757512

  16. Atomic-Scale Observation of Migration and Coalescence of Au Nanoclusters on YSZ Surface by Aberration-Corrected STEM

    PubMed Central

    Li, Junjie; Wang, Zhongchang; Chen, Chunlin; Huang, Sumei

    2014-01-01

    Unraveling structural dynamics of noble metal nanoclusters on oxide supports is critical to understanding reaction process and origin of catalytic activity in heterogeneous catalysts. Here, we show that aberration-corrected scanning transmission electron microscopy can provide direct atomic-resolution imaging of surface migration, coalescence, and atomic rearrangement of Au clusters on an Y:ZrO2 (YSZ) support. The high resolution enables us to reveal migration and coalescence process of Au clusters at the atomic scale, and to demonstrate that the coalesced clusters undergo a cooperative atomic rearrangement, which transforms the coherent into incoherent Au/YSZ interface. This approach can help to elucidate atomistic mechanism of catalytic activities and to develop novel catalysts with enhanced functionality. PMID:24980655

  17. In-situ aberration correction of Bessel beams using spatial light modulator

    NASA Astrophysics Data System (ADS)

    Jákl, Petr; Arzola, Alejandro V.; Zemánek, Pavel

    2015-01-01

    A spatial light modulator (SLM) is a versatile device capable of real-time generation of diffractive phase gratings. Employing the SLM in an optical setup opens the possibility of dynamic modification of properties of the incident laser beam, such as its splitting into an arbitrary number of diffracted beams, changing its convergence or its modification into non-traditional laser beam profiles. Advanced feedback procedures enable resolving complex phase masks correcting aberrations inherent to the whole optical system, such as imprecisions of manufacturing process, inhomogeneity of refractive index of materials used or misalignment of optical elements. In this work, generation of Bessel beams (BB) using the SLM is presented. The BB quality is very sensitive to the optical aberrations of the system, especially when higher topological charge is applied to create so-called optical vortices. Therefore, the method compensating those aberrations is applied and the corrected beam is inspected by a CCD camera and optical micro-manipulations of micro-particles. Our experimental results demonstrate successful trapping, rotation and translation of micrometer-sized particles purely by optical forces.

  18. Correction of axial chromatic aberrations in confocal Raman microspectroscopic measurements of a single microbial spore.

    PubMed

    Lasch, Peter; Hermelink, Antje; Naumann, Dieter

    2009-06-01

    Herein we describe a strategy for correcting the longitudinal or axial component of chromatic aberration in confocal Raman microspectroscopy. The method is based on measuring a vertical series of confocal Raman sections of samples by a high numerical aperture Raman microscope. Using the known characteristics of the wavelength-dependent focal shift of the optical system, the Raman intensities can be corrected to allow the rearrangement of Raman data from different focal planes. In the present study the computational correction routine was applied to an experimental data set of 4-dimensional (xyz spatial and the spectral dimension) confocal Raman spectra collected from single spores of Bacillus cereus. After correcting the axial component of the chromatic aberration, univariate and multivariate spectral parameters were obtained and used in the following for 3D segmentation and volume rendering on the basis of the structural and compositional information contained in the Raman spectra of the spore. Using univariate Raman intensities from defined functional group frequencies or k-means cluster membership values as a multivariate parameter for volume rendering, we demonstrate a high degree of correlation between confocal Raman microspectroscopy and the spores' morphology. In this paper we will also present cluster mean spectra which will be discussed in light of the presence of proteins and Ca-DPA, a calcium chelate of dipicolinic acid in the spore. PMID:19475143

  19. Wavefront aberration measurements and corrections through thick tissue using fluorescent microsphere reference beacons

    PubMed Central

    Azucena, Oscar; Crest, Justin; Cao, Jian; Sullivan, William; Kner, Peter; Gavel, Donald; Dillon, Daren; Olivier, Scot; Kubby, Joel

    2010-01-01

    We present a new method to directly measure and correct the aberrations introduced when imaging through thick biological tissue. A Shack-Hartmann wavefront sensor is used to directly measure the wavefront error induced by a Drosophila embryo. The wavefront measurements are taken by seeding the embryo with fluorescent microspheres used as “artificial guide-stars.” The wavefront error is corrected in ten millisecond steps by applying the inverse to the wavefront error on a micro-electro-mechanical deformable mirror in the image path of the microscope. The results show that this new approach is capable of improving the Strehl ratio by 2 times on average and as high as 10 times when imaging through 100 μm of tissue. The results also show that the isoplanatic half-width is approximately 19 μm resulting in a corrected field of view 38 μm in diameter around the guide-star. PMID:20721137

  20. Design and progress toward a multi-conjugate adaptive optics system for distributed aberration correction

    SciTech Connect

    Baker, K; Olivier, S; Tucker, J; Silva, D; Gavel, D; Lim, R; Gratrix, E

    2004-08-17

    This article investigates the use of a multi-conjugate adaptive optics system to improve the field-of-view for the system. The emphasis of this research is to develop techniques to improve the performance of optical systems with applications to horizontal imaging. The design and wave optics simulations of the proposed system are given. Preliminary results from the multi-conjugate adaptive optics system are also presented. The experimental system utilizes a liquid-crystal spatial light modulator and an interferometric wave-front sensor for correction and sensing of the phase aberrations, respectively.

  1. Aberration correction during real time in vivo imaging of bone marrow with sensorless adaptive optics confocal microscope

    NASA Astrophysics Data System (ADS)

    Wang, Zhibin; Wei, Dan; Wei, Ling; He, Yi; Shi, Guohua; Wei, Xunbin; Zhang, Yudong

    2014-08-01

    We have demonstrated adaptive correction of specimen-induced aberration during in vivo imaging of mouse bone marrow vasculature with confocal fluorescence microscopy. Adaptive optics system was completed with wavefront sensorless correction scheme based on stochastic parallel gradient descent algorithm. Using image sharpness as the optimization metric, aberration correction was performed based upon Zernike polynomial modes. The experimental results revealed the improved signal and resolution leading to a substantially enhanced image contrast with aberration correction. The image quality of vessels at 38- and 75-μm depth increased three times and two times, respectively. The corrections allowed us to detect clearer bone marrow vasculature structures at greater contrast and improve the signal-to-noise ratio.

  2. Dynamic Aberration Correction for Conformal Window of High-Speed Aircraft Using Optimized Model-Based Wavefront Sensorless Adaptive Optics.

    PubMed

    Dong, Bing; Li, Yan; Han, Xin-Li; Hu, Bin

    2016-01-01

    For high-speed aircraft, a conformal window is used to optimize the aerodynamic performance. However, the local shape of the conformal window leads to large amounts of dynamic aberrations varying with look angle. In this paper, deformable mirror (DM) and model-based wavefront sensorless adaptive optics (WSLAO) are used for dynamic aberration correction of an infrared remote sensor equipped with a conformal window and scanning mirror. In model-based WSLAO, aberration is captured using Lukosz mode, and we use the low spatial frequency content of the image spectral density as the metric function. Simulations show that aberrations induced by the conformal window are dominated by some low-order Lukosz modes. To optimize the dynamic correction, we can only correct dominant Lukosz modes and the image size can be minimized to reduce the time required to compute the metric function. In our experiment, a 37-channel DM is used to mimic the dynamic aberration of conformal window with scanning rate of 10 degrees per second. A 52-channel DM is used for correction. For a 128 × 128 image, the mean value of image sharpness during dynamic correction is 1.436 × 10(-5) in optimized correction and is 1.427 × 10(-5) in un-optimized correction. We also demonstrated that model-based WSLAO can achieve convergence two times faster than traditional stochastic parallel gradient descent (SPGD) method. PMID:27598161

  3. Smart microscope: an adaptive optics learning system for aberration correction in multiphoton confocal microscopy.

    PubMed

    Albert, O; Sherman, L; Mourou, G; Norris, T B; Vdovin, G

    2000-01-01

    Off-axis aberrations in a beam-scanning multiphoton confocal microscope are corrected with a deformable mirror. The optimal mirror shape for each pixel is determined by a genetic learning algorithm, in which the second-harmonic or two-photon fluorescence signal from a reference sample is maximized. The speed of the convergence is improved by use of a Zernike polynomial basis for the deformable mirror shape. This adaptive optical correction scheme is implemented in an all-reflective system by use of extremely short (10-fs) optical pulses, and it is shown that the scanning area of an f:1 off-axis parabola can be increased by nine times with this technique. PMID:18059779

  4. Pitch–Catch Phase Aberration Correction of Multiple Isoplanatic Patches for 3-D Transcranial Ultrasound Imaging

    PubMed Central

    Lindsey, Brooks D.; Smith, Stephen W.

    2013-01-01

    Having previously presented the ultrasound brain helmet, a system for simultaneous 3-D ultrasound imaging via both temporal bone acoustic windows, the scanning geometry of this system is utilized to allow each matrix array to serve as a correction source for the opposing array. Aberration is estimated using cross-correlation of RF channel signals, followed by least mean squares solution of the resulting overdetermined system. Delay maps are updated and real-time 3-D scanning resumes. A first attempt is made at using multiple arrival time maps to correct multiple unique aberrators within a single transcranial imaging volume, i.e., several isoplanatic patches. This adaptive imaging technique, which uses steered unfocused waves transmitted by the opposing, or beacon, array, updates the transmit and receive delays of 5 isoplanatic patches within a 64° × 64° volume. In phantom experiments, color flow voxels above a common threshold have also increased by an average of 92%, whereas color flow variance decreased by an average of 10%. This approach has been applied to both temporal acoustic windows of two human subjects, yielding increases in echo brightness in 5 isoplanatic patches with a mean value of 24.3 ± 9.1%, suggesting that such a technique may be beneficial in the future for performing noninvasive 3-D color flow imaging of cerebrovascular disease, including stroke. PMID:23475914

  5. Real-Time 3D Contrast-Enhanced Transcranial Ultrasound and Aberration Correction

    PubMed Central

    Ivancevich, Nikolas M.; Pinton, Gianmarco F.; Nicoletto, Heather A.; Bennett, Ellen; Laskowitz, Daniel T.; Smith, Stephen W.

    2008-01-01

    Contrast-enhanced (CE) transcranial ultrasound (US) and reconstructed 3D transcranial ultrasound have shown advantages over traditional methods in a variety of cerebrovascular diseases. We present the results from a novel ultrasound technique, namely real-time 3D contrast-enhanced transcranial ultrasound. Using real-time 3D (RT3D) ultrasound and micro-bubble contrast agent, we scanned 17 healthy volunteers via a single temporal window and 9 via the sub-occipital window and report our detection rates for the major cerebral vessels. In 71% of subjects, both of our observers identified the ipsilateral circle of Willis from the temporal window, and in 59% we imaged the entire circle of Willis. From the sub-occipital window, both observers detected the entire vertebrobasilar circulation in 22% of subjects, and in 44% the basilar artery. After performing phase aberration correction on one subject, we were able to increase the diagnostic value of the scan, detecting a vessel not present in the uncorrected scan. These preliminary results suggest that RT3D CE transcranial US and RT3D CE transcranial US with phase aberration correction have the potential to greatly impact the field of neurosonology. PMID:18395321

  6. Error Correction for Tandem Data-Transmission Paths

    NASA Technical Reports Server (NTRS)

    Posner, E. C.; Rubin, A. L.

    1985-01-01

    Mathematical analysis for digital data transmission calculates optimum number of binary error-correcting repeaters to install in given number of wideband channel links. Asymptotic results compared to computed numerical results.

  7. Phase aberration correction by multi-stencils fast marching method using sound speed image in ultrasound computed tomography

    NASA Astrophysics Data System (ADS)

    Qu, Xiaolei; Azuma, Takashi; Lin, Hongxiang; Imoto, Haruka; Tamano, Satoshi; Takagi, Shu; Umemura, Shin-Ichiro; Sakuma, Ichiro; Matsumoto, Yoichiro

    2016-04-01

    Reflection image from ultrasound computed tomography (USCT) system can be obtained by synthetic aperture technique, however its quality is decreased by phase aberration caused by inhomogeneous media. Therefore, phase aberration correction is important to improve image quality. In this study, multi-stencils fast marching method (MSFMM) is employed for phase correction. The MSFMM is an accurate and fast solution of Eikonal equation which considers the refraction. The proposed method includes two steps. First, the MSFMM is used to compute sound propagation time from each element to each image gird point using sound speed image of USCT. Second, synthetic aperture technique is employed to obtain reflection image using the computed propagation time. To evaluate the proposed method, both numerical simulation and phantom experiment were conducted. With regard to numerical simulation, both quantitative and qualitative comparisons between reflection images with and without phase aberration correction were given. In the quantitative comparison, the diameters of point spread function (PSF) in reflection images of a two layer structure were presented. In the qualitative comparison, reflection images of simple circle and complex breast modes with phase aberration correction show higher quality than that without the correction. In respect to phantom experiment, a piece of breast phantom with artificial glandular structure inside was scanned by a USCT prototype, and the artificial glandular structure is able to be visible more clearly in the reflection image with phase aberration correction than in that without the correction. In this study, a phase aberration correction method by the MSFMM are proposed for reflection image of the USCT.

  8. The research of calibration method on lens-tilt displacement transmission-type system based on the aberration bounded model

    NASA Astrophysics Data System (ADS)

    Xu, Chun-mei; Liu, Bing-qi; Li, Li; Huang, Fu-yu; Zhang, Chu

    2015-10-01

    As the developing appliance range of high-resolution optical design, the requirement on the aberration of system design is becoming higher and higher, but the installation and adjustment error of optical components is an important element which influences the aberration. The decentration and tilt of optical components result not only the image lateral displacement but also the aberration enlargement of the optical system, the research on image quality of plane symmetric optical system is becoming more and more popular. The Gaussian correction methods on lens decentration already exist, but it is short of theoretical research to guide the correction on the lens tilt, which leads to the effect of image lateral displacement. This thesis analyzes theoretically a mathematical model between the lens tilt degree and wave aberration, and deduces mathematically the correction equation of zero aberration increment under the aberration constraint condition. Taking an example of some type optical sight, the ZEMAX simulation is carried out to validate this method, and the results show that: This method can effectively guide the correction of lens tilt, and reduce the influence of lens position change on the optical imaging quality. It has important practical significance to guide high-resolution optical design.

  9. Dark-field electron holography for the mapping of strain in nanostructures: correcting artefacts and aberrations

    NASA Astrophysics Data System (ADS)

    Hÿtch, M. J.; Houdellier, F.; Hüe, F.; Snoeck, E.

    2010-07-01

    We present details of the new electron holographic dark-field technique (HoloDark) for mapping strain in nanostructures. A diffracted beam emanating from an unstrained region of crystal is interfered (with the aid of an electrostatic biprism) with a diffracted beam from the strained region of interest. Geometric phase analysis (GPA) of the holographic fringes determines the relative deformation of the two crystalline lattices. Strain can be measured to high precision, with nanometre spatial resolution and for micron fields of view. Experiments are carried out on the SACTEM-Toulouse, a Tecnai F20 (FEI) equipped with imaging aberration corrector (CEOS), field-emission gun and rotatable biprism (FEI). We operate the microscope in free-lens control with the main objective lens switched off and using the corrector transfer lenses as a Lorentz lens. We will present measurements of strain in test nanostructures and show how artefacts from thickness variations can be removed. Finally, we show our first results using a recently developed aberration-corrected Lorentz mode (CEOS).

  10. Interfacial atomic structure analysis at sub-angstrom resolution using aberration-corrected STEM

    PubMed Central

    2014-01-01

    The atomic structure of a SiGe/Si epitaxial interface grown via molecular beam epitaxy on a single crystal silicon substrate was investigated using an aberration-corrected scanning transmittance electron microscope equipped with a high-angle annular dark-field detector and an energy-dispersive spectrometer. The accuracy required for compensation of the various residual aberration coefficients to achieve sub-angstrom resolution with the electron optics system was also evaluated. It was found that the interfacial layer was composed of a silicon single crystal, connected coherently to epitaxial SiGe nanolaminates. In addition, the distance between the dumbbell structures of the Si and Ge atoms was approximately 0.136 nm at the SiGe/Si interface in the [110] orientation. The corresponding fast Fourier transform exhibited a sub-angstrom scale point resolution of 0.78 Å. Furthermore, the relative positions of the atoms in the chemical composition line scan signals could be directly interpreted from the corresponding incoherent high-angle annular dark-field image. PMID:25426003

  11. Ultrahigh-resolution optical coherence tomography with monochromatic and chromatic aberration correction

    PubMed Central

    Zawadzki, Robert J.; Cense, Barry; Zhang, Yan; Choi, Stacey S.; Miller, Donald T.; Werner, John S.

    2008-01-01

    We have developed an improved adaptive optics - optical coherence tomography (AO-OCT) system and evaluated its performance for in vivo imaging of normal and pathologic retina. The instrument provides unprecedented image quality at the retina with isotropic 3D resolution of 3.5 × 3.5 × 3.5 μm3. Critical to the instrument's resolution is a customized achromatizing lens that corrects for the eye's longitudinal chromatic aberration and an ultra broadband light source (Δλ=112nm λ0=∼836 nm). The eye's transverse chromatic aberrations is modeled and predicted to be sufficiently small for the imaging conditions considered. The achromatizing lens was strategically placed at the light input of the AO-OCT sample arm. This location simplifies use of the achromatizing lens and allows straightforward implementation into existing OCT systems. Lateral resolution was achieved with an AO system that cascades two wavefront correctors, a large stroke bimorph deformable mirror (DM) and a micro-electromechanical system (MEMS) DM with a high number of actuators. This combination yielded diffraction-limited imaging in the eyes examined. An added benefit of the broadband light source is the reduction of speckle size in the axial dimension. Additionally, speckle contrast was reduced by averaging multiple B-scans of the same proximal patch of retina. The combination of improved micron-scale 3D resolution, and reduced speckle size and contrast were found to significantly improve visibility of microscopic structures in the retina. PMID:18545525

  12. Prospects of atomic resolution imaging with an aberration-corrected STEM.

    PubMed

    Ishizuka, K

    2001-01-01

    We investigated high-resolution scanning transmission electron microscope (STEM) images obtained from a microscope equipped with a spherical aberration corrector. The probe size (full-width at half-maximum) is reduced to 0.76 A at 200 kV by assuming the fifth-order spherical aberration coefficient C5 = 100 mm. For the simulation we have used the recently developed scheme for a STEM image simulation based on the Fast Fourier Transform (FFT) multislice algorithm. The peak-to-background (P/B) ratio of the high-angle annular dark-field (HAADF) image is significantly improved at a thin specimen region. Although the P/B ratio becomes worse at a thicker region, the resolution is kept high even at such a region. An almost true HAADF signal will be obtained even from a weak-scattering phosphorous column in InP [001] when the background is subtracted. In the bright-field image the coherent character of elastic scattering is suppressed by averaging over a large convergence angle, making the specimen effectively self-luminous. The claim that HAADF imaging is relatively insensitive to a defocus as well as a specimen thickness is valid only qualitatively, and a detailed image simulation will be required for a quantitative analysis as in the case of the conventional transmission electron microscope. It was noted that the delta function approximation for the object function may not be applicable for a very fine probe, and that the achievable resolution of the HAADF imaging will be limited by the widths of the high-angle thermal diffuse scattering potential. PMID:11592674

  13. Multiwavelength phase unwrapping and aberration correction using depth filtered digital holography.

    PubMed

    Jaedicke, Volker; Goebel, Sebastian; Koukourakis, Nektarios; Gerhardt, Nils C; Welp, Hubert; Hofmann, Martin R

    2014-07-15

    In this Letter, we present a new approach to processing data from a standard spectral domain optical coherence tomography (OCT) system using depth filtered digital holography (DFDH). Intensity-based OCT processing has an axial resolution of the order of a few micrometers. When the phase information is used to obtain optical path length differences, subwavelength accuracy can be achieved, but this limits the resolvable step heights to half of the wavelength of the system. Thus there is a metrology gap between phase- and intensity-based methods. Our concept addresses this metrology gap by combining DFHD with multiwavelength phase unwrapping. Additionally, the measurements are corrected for aberrations. Here, we present proof of concept measurements of a structured semiconductor sample. PMID:25121676

  14. Structural investigation of precipitates with Cu and Zn atomic columns in Al-Mg-Si alloys by aberration-corrected HAADF-STEM

    NASA Astrophysics Data System (ADS)

    Saito, Takeshi; Marioara, Calin D.; Andersen, Sigmund J.; Lefebvre, Williams; Holmestad, Randi

    2014-06-01

    Precipitates in Al-Mg-Si alloys with Cu addition (~0.1 wt%) and Zn addition (~1 wt%) were investigated by aberration corrected high angle annular dark field scanning transmission electron microscopy (HAADF-STEM). Most precipitates had no overall unit cell but contained ordered network of Si atomic columns for both the Cu and the Zn containing precipitates. It was found that both Cu and Zn atomic columns are located at specific sites and producing characteristic local configurations on the Si atomic columns.

  15. In-flight aberrations corrections for large space telescopes using active optics

    NASA Astrophysics Data System (ADS)

    Laslandes, M.; Ferrari, M.; Hugot, E.; Lemaitre, G.

    2010-07-01

    The need for both high quality images and light structures is a constant concern in the conception of space telescopes. The goal here is to determine how an active optics system could be embarked on a satellite in order to correct the wave front deformations of the optical train. The optical aberrations appearing in a space environment are due to mirrors' deformations, with three main origins: the thermal variations, the weightlessness in space with respect to the Assemblage, Integration and Testing (AIT) conditions on ground and the use of large weightlighted primary mirrors. We are developing a model of deformable mirror as minimalist as possible, especially in term of number of actuators, which is able to correct the first Zernike polynomials in the specified range of amplitude and precision. Flight constraints as weight, volume and power consumption have to be considered. Firstly, such a system is designed according to the equations from the elasticity theory: we determine the geometrical and mechanical characteristics of the mirror, the location of the forces to be applied and the way to apply them. The concept is validated with a Finite Element Analysis (FEA), allowing optimizing the system by taking into account parameters absent from the theory. At the end of the program the mirror will be realized and characterized in a representative optical configuration.

  16. Application of polymer graded-index materials for aberration correction of progressive addition lenses

    NASA Astrophysics Data System (ADS)

    Shitanoki, Yuki; Tagaya, Akihiro; Koike, Yasuhiro

    2009-02-01

    Graded-index (GRIN) progressive addition lens (PAL) was successfully fabricated, and GRIN's potential for aberration correction of PAL was confirmed. GRIN material was prepared by partial diffusion of methyl methacrylate (MMA (nd at polymer = 1.492)) monomer into cross-linked benzyl methacrylate (BzMA (nd at polymer=1.568)) flat gel, and GRINPAL was prepared by polymerization of the GRIN material attached to a mold of commercially available PAL. GRIN polymer materials have been used for various applications such as rod lenses and optical fibers. GRIN represents gradual change of refractive index in a material, which adds or reduces light focusing power of the material. PAL is a multifocal spectacle lens for presbyopia. However, some localized aberrations (especially astigmatism) in PAL have not yet been reduced satisfactorily for decades by optimizing surface geometry of a lens. In this research, we propose to employ GRIN materials for astigmatism reduction of PALs. BzMA flat gel was prepared by UV polymerization of BzMA, crosslinking agent ethylene glycol dimethacrylate (EDMA) and photopolymerization initiator DAROCURE 1173. MMA monomer was diffused into BzMA flat gel from a portion of periphery for several hours. The obtained GRIN material was attached to a mold of commercially available PAL and polymerized by UV. As a result, reduction of astigmatism was confirmed locally in the fabricated PAL and GRIN-PAL using lens meter. In conclusion, GRIN-PAL was successfully fabricated. The validity of GRIN employment for the astigmatism reduction in PAL was demonstrated experimentally.

  17. Simultaneous correction of large low-order and high-order aberrations with a new deformable mirror technology

    NASA Astrophysics Data System (ADS)

    Rooms, F.; Camet, S.; Curis, J. F.

    2010-02-01

    A new technology of deformable mirror will be presented. Based on magnetic actuators, these deformable mirrors feature record strokes (more than +/- 45μm of astigmatism and focus correction) with an optimized temporal behavior. Furthermore, the development has been made in order to have a large density of actuators within a small clear aperture (typically 52 actuators within a diameter of 9.0mm). We will present the key benefits of this technology for vision science: simultaneous correction of low and high order aberrations, AO-SLO image without artifacts due to the membrane vibration, optimized control, etc. Using recent papers published by Doble, Thibos and Miller, we show the performances that can be achieved by various configurations using statistical approach. The typical distribution of wavefront aberrations (both the low order aberration (LOA) and high order aberration (HOA)) have been computed and the correction applied by the mirror. We compare two configurations of deformable mirrors (52 and 97 actuators) and highlight the influence of the number of actuators on the fitting error, the photon noise error and the effective bandwidth of correction.

  18. Automatic transmission electronic gearshift control having altitude corrected shift criteria

    SciTech Connect

    Baltusis, P.A.; Greene, T.L.; Palansky, B.J.

    1990-07-24

    This patent describes a method for controlling gearshifts in an automatic transmission of a motor vehicle having an engine, electronic computer, electronic memory accessible to the computer. It comprises: generating an engine speed signal; storing in memory engine speeds corresponding to a wide open throttle condition at which gearshifts are scheduled to occur at a reference barometric pressure; calculating a engine speed barometric pressure correction to account for a difference between reference barometric pressure and current ambient barometric pressure; generating, in response to the engine speed barometric pressure correction, an altitude corrected engine speed signal representing engine speed corresponding to a wide open throttle condition at which gearshifts are to occur at current ambient barometric pressure; comparing the current engine speed signal to the barometric pressure corrected engine speed signal; and producing a gearshift when the comparison indicates current engine speed exceeds the barometric pressure corrected engine speed.

  19. A two-stage method to correct aberrations induced by slide slant in bright-field microscopy.

    PubMed

    Fan, Yilun; Bradley, Andrew P

    2016-08-01

    To achieve optimal image quality in bright field microscopy, the slide surface should be perpendicular to the optical axis of the microscope. However, in the recently proposed "slanted scan" slide acquisition technique, scan speed is increased by purposely slanting the slide by a small angle (of 3-5°) so that multiple focal depths can be imaged simultaneously. In this case, the slanted slide introduces a bend in the point spread function (PSF), resulting in a coma and other aberrations that degrade image quality. In this paper, we propose a two-stage deconvolution method specifically designed to correct the aberrations induced by a slanted scan, but with general applicability to high-resolution bright-field microscopy. Specifically, we initially apply phase deconvolution to correct the dominating coma aberration, before applying a conventional semi-blind deconvolution method to further improve image resolution and contrast. We also propose a novel method to estimate the degree of coma aberration and the PSF of the optics utilising actual cytology specimens. The efficacy of the proposed algorithm is demonstrated quantitatively on simulated data, against a ground-truth (object) image, and qualitatively on cervical cytology specimens. Results demonstrate both improved convergence speed of the two-stage approach, especially when correcting the bend in the PSF, and a resultant image quality that is comparable to a conventionally (flat) scanned specimen. PMID:27182660

  20. Aberration correction for direct laser written waveguides in a transverse geometry.

    PubMed

    Huang, L; Salter, P S; Payne, F; Booth, M J

    2016-05-16

    The depth dependent spherical aberration is investigated for ultrafast laser written waveguides fabricated in a transverse writing geometry using the slit beam shaping technique in the low pulse repetition rate regime. The axial elongation of the focus caused by the aberration leads to a distortion of the refractive index change, and waveguides designed as single mode become multimode. We theoretically estimate a depth range over which the aberration effects can be compensated simply by adjusting the incident laser power. If deeper fabrication is required, it is demonstrated experimentally that the aberration can be successfully removed using adaptive optics to fabricate single mode optical waveguides over a depth range > 1 mm. PMID:27409879

  1. Simple system of aberration correction for very large spherical primary mirrors

    NASA Astrophysics Data System (ADS)

    Beach, David A.

    2000-10-01

    Several large telescopes are now being proposed that would benefit from the cost reduction due to the use of spherical primary mirror. However, structural cost constraints require compact formats that tend to impose very high speeds, e.g. f/1.5, which renders difficult the correction of the resulting very large spherical aberration. A technique is described here in which a spherical concentric Cassegrain-like primary-secondary combination is followed by a simple catadioptric focal modifier. The spherical primary is 9m diameter, f/1.5, and the final focus is f/5 with a sub-arcsecond resolution over a 5 arcminute angular field for a passband of 480-850nm. Primary- secondary separation is only 11m and central obscuration is only 11% of pupil area. The two relatively small corrector components provide the functions of concentric meniscus and zonal corrector plate and are made from the same single glass- BK7 is the example given, but silica or any other preferred glass is possible. The relatively small zonal corrector is the only aspheric surface in the entire system. A related system is described elsewhere in which a 30 arcminute angular field can be achieved with a similar resolution, but with more complex glass requirements. However, supply of such exotic glasses may be difficult in large diameters, and the system presented here may find a place in some specialized applications.

  2. Chromatic-aberration-corrected diffractive lenses for ultra-broadband focusing

    DOE PAGESBeta

    Wang, Peng; Mohammad, Nabil; Menon, Rajesh

    2016-02-12

    We exploit the inherent dispersion in diffractive optics to demonstrate planar chromatic-aberration-corrected lenses. Specifically, we designed, fabricated and characterized cylindrical diffractive lenses that efficiently focus the entire visible band (450 nm to 700 nm) onto a single line. These devices are essentially pixelated, multi-level microstructures. Experiments confirm an average optical efficiency of 25% for a three-wavelength apochromatic lens whose chromatic focus shift is only 1.3 μm and 25 μm in the lateral and axial directions, respectively. Super-achromatic performance over the continuous visible band is also demonstrated with averaged lateral and axial focus shifts of only 1.65 μm and 73.6 μm,more » respectively. These lenses are easy to fabricate using single-step grayscale lithography and can be inexpensively replicated. Furthermore, these devices are thin (<3 μm), error tolerant, has low aspect ratio (<1:1) and offer polarization-insensitive focusing, all significant advantages compared to alternatives that rely on metasurfaces. Lastly, our design methodology offers high design flexibility in numerical aperture and focal length, and is readily extended to 2D.« less

  3. Chromatic-aberration-corrected diffractive lenses for ultra-broadband focusing

    PubMed Central

    Wang, Peng; Mohammad, Nabil; Menon, Rajesh

    2016-01-01

    We exploit the inherent dispersion in diffractive optics to demonstrate planar chromatic-aberration-corrected lenses. Specifically, we designed, fabricated and characterized cylindrical diffractive lenses that efficiently focus the entire visible band (450 nm to 700 nm) onto a single line. These devices are essentially pixelated, multi-level microstructures. Experiments confirm an average optical efficiency of 25% for a three-wavelength apochromatic lens whose chromatic focus shift is only 1.3 μm and 25 μm in the lateral and axial directions, respectively. Super-achromatic performance over the continuous visible band is also demonstrated with averaged lateral and axial focus shifts of only 1.65 μm and 73.6 μm, respectively. These lenses are easy to fabricate using single-step grayscale lithography and can be inexpensively replicated. Furthermore, these devices are thin (<3 μm), error tolerant, has low aspect ratio (<1:1) and offer polarization-insensitive focusing, all significant advantages compared to alternatives that rely on metasurfaces. Our design methodology offers high design flexibility in numerical aperture and focal length, and is readily extended to 2D. PMID:26868264

  4. Multi-focus microscopy for aberration-corrected multi-color three-dimensional imaging

    NASA Astrophysics Data System (ADS)

    Abrahamsson, Sara

    Due to the classical conflict between spatial and temporal resolution, microscopy studies of fast events in living samples are often performed in 2D even when 3D imaging would be desirable and could provide new insights to biological function. This dissertation describes an instant 3D imaging system - a multi-focus microscope (MFM) - which provides high- resolution, aberration-corrected, multi-color fluorescence images of multiple focal planes simultaneously. Forming an instant focal series eliminates the need for multiple camera exposures and mechanical refocusing, allowing 3D imaging limited only by sample signal strength and the camera read-out rate for a single frame. A module containing the MFM optical components can easily be appended to the camera port of a commercial wide-field microscope. The excellent resolution and sensitivity of MFM is demonstrated on two different 3D biological imaging problems; neuronal imaging in the entire C.elegans embryo and mRNA imaging in cultured mammalian cells.

  5. Chromatic-aberration-corrected diffractive lenses for ultra-broadband focusing.

    PubMed

    Wang, Peng; Mohammad, Nabil; Menon, Rajesh

    2016-01-01

    We exploit the inherent dispersion in diffractive optics to demonstrate planar chromatic-aberration-corrected lenses. Specifically, we designed, fabricated and characterized cylindrical diffractive lenses that efficiently focus the entire visible band (450 nm to 700 nm) onto a single line. These devices are essentially pixelated, multi-level microstructures. Experiments confirm an average optical efficiency of 25% for a three-wavelength apochromatic lens whose chromatic focus shift is only 1.3 μm and 25 μm in the lateral and axial directions, respectively. Super-achromatic performance over the continuous visible band is also demonstrated with averaged lateral and axial focus shifts of only 1.65 μm and 73.6 μm, respectively. These lenses are easy to fabricate using single-step grayscale lithography and can be inexpensively replicated. Furthermore, these devices are thin (<3 μm), error tolerant, has low aspect ratio (<1:1) and offer polarization-insensitive focusing, all significant advantages compared to alternatives that rely on metasurfaces. Our design methodology offers high design flexibility in numerical aperture and focal length, and is readily extended to 2D. PMID:26868264

  6. Double aberration-corrected TEM/STEM of tungstated zirconia nanocatalysts for the synthesis of paracetamol

    NASA Astrophysics Data System (ADS)

    Yoshida, K.; Shiju, N. R.; Brown, D. R.; Boyes, E. D.; Gai, P. L.

    2010-07-01

    We report highly active tungstated zirconia nanocatalysts for the synthesis of paracetamol by Beckmann rearrangement of 4-hydroxyacetophenone oxime. Double aberration-corrected (2AC)-TEM/STEM studies were performed in a JEOL 2200FS FEG TEM/STEM at the 1 Angstrom (1 Å = 0.1 nanometer) level. Observations at close to zero defocus were carried out using the AC-TEM as well as AC-STEM including high angle annular dark field (HAADF) imaging, from the same areas of the catalyst crystallites. The studies from the same areas have revealed the location and the nanostructure of the polytungstate species (clusters) and the nanograins of zirconia. The AC (S)TEM was crucial to observe the nanostructure and location of polytungstate clusters on the zirconia grains. Polytungstate clusters as small as 0.5 nm have been identified using the HAADF-STEM. The nanostructures of the catalyst and the W surface density have been correlated with paracetamol reaction studies. The results demonstrate the nature of active sites and high activity of the tungstated zirconia nanocatalyst, which is an environmentally clean alternative to the current homogeneous process.

  7. Chromosome therapy. Correction of large chromosomal aberrations by inducing ring chromosomes in induced pluripotent stem cells (iPSCs).

    PubMed

    Kim, Taehyun; Bershteyn, Marina; Wynshaw-Boris, Anthony

    2014-01-01

    The fusion of the short (p) and long (q) arms of a chromosome is referred to as a "ring chromosome." Ring chromosome disorders occur in approximately 1 in 50,000-100,000 patients. Ring chromosomes can result in birth defects, mental disabilities, and growth retardation if additional genes are deleted during the formation of the ring. Due to the severity of these large-scale aberrations affecting multiple contiguous genes, no possible therapeutic strategies for ring chromosome disorders have so far been proposed. Our recent study (Bershteyn et al.) using patient-derived fibroblast lines containing ring chromosomes, found that cellular reprogramming of these fibroblasts into induced pluripotent stem cells (iPSCs) resulted in the cell-autonomous correction of the ring chromosomal aberration via compensatory uniparental disomy (UPD). These observations have important implications for studying the mechanism of chromosomal number control and may lead to the development of effective therapies for other, more common, chromosomal aberrations. PMID:25482192

  8. Long-range chemical orders in Au-Pd nanoparticles revealed by aberration-corrected electron microscopy.

    PubMed

    Nelayah, Jaysen; Nguyen, Nhat Tai; Alloyeau, Damien; Wang, Guillaume Yangshu; Ricolleau, Christian

    2014-09-01

    Despite the importance of gold-palladium nanoalloys in heterogeneous catalysis, the phase stability of Au-Pd alloys still remains unclear. We report here on the alloying and chemical ordering in epitaxially-grown and post-annealed gold-palladium nanoparticles (NPs) using aberration-corrected transmission electron microscopy. Au-Pd NPs with a controlled size, composition and structure were grown by pulsed laser deposition on freshly-cleaved NaCl(001) single crystals heated at 300 °C. After transfer to an amorphous carbon support, the NPs were annealed in vacuum at elevated temperatures above 400 °C for a few hours (6-10 hours) to promote chemical ordering. The as-grown NPs were mostly monocrystalline with a chemically-disordered face-centered cubic structure. Upon high-temperature annealing, a high degree of chemical ordering was observed in nanometer-sized NPs. Electron microscopy measurements showed that both L10 and L12 orders are stabilized in the Au-rich region of the Au-Pd phase diagram. These ordered phases exist at temperatures as high as 600 °C. Moreover, compositional analysis of single annealed particles revealed that the observed chemical ordering occurs in parallel to a two-tiered Ostwald ripening process. Due to this ripening process, a clear dependence between chemical composition and particle size is established during annealing with an enrichment in Pd as the NPs grow in size. Our results, besides clarifying some controversial aspects about long-range order in Au-Pd alloys, shed light on the structural stability of Au-Pd nanoalloys at elevated temperatures. PMID:25079393

  9. Direct observation of atomic columns in a Bi-2223 polycrystal by aberration-corrected STEM using a low accelerating voltage

    NASA Astrophysics Data System (ADS)

    Nagai, Takuro; Haruta, Mitsutaka; Kikuchi, Masashi; Zhang, Weizhu; Takeguchi, Masaki; Kimoto, Koji

    2014-05-01

    Aberration correction in scanning transmission electron microscopy (STEM) enables an atomic-scale probe size of ˜0.1 nm at a low accelerating voltage of 80 kV that avoids knock-on damage in materials including light elements such as oxygen. We used this advanced method of microscopy to directly observe atomic columns in a (Bi,Pb)2Sr2Ca2Cu3O10+δ (Bi-2223) superconducting wire produced by a powder-in-tube method. Using the atomic-number (Z) contrast mechanism, incoherent high-angle annular dark-field (HAADF) imaging clearly showed the atomic columns. Atomic displacements toward the boundary with a maximum magnitude of ˜0.26 nm enable each atomic layer to be continuous at edge grain boundaries (EGBs). The grains tend to be terminated with deficient (Bi,Pb)-O single layers at c-axis twist boundaries (TWBs) and small-angle asymmetrical tilt boundaries (ATBs); a quantitative HAADF analysis showed that the occupancies of the (Bi,Pb) sites around these boundaries are ˜0.66 and ˜0.72, respectively. Electron energy-loss spectroscopy (EELS) mapping successfully visualized atomic columns in the half-unit cell intergrowth of (Bi,Pb)2Sr2CaCu2O8+δ (Bi-2212) and (Bi,Pb)2Sr2Ca3Cu4O12+δ (Bi-2234) phases. Furthermore, the HAADF analysis indicated that the occupancy of the (Bi,Pb) sites is modulated between ˜0.88 and 1.0 along the diagonal direction of the primitive perovskite cell with the same period as the structural modulation.

  10. A Novel Concept for a Deformable Membrane Mirror for Correction of Large Amplitude Aberrations

    NASA Technical Reports Server (NTRS)

    Moore, Jim; Patrick, Brian

    2006-01-01

    Very large, light weight mirrors are being developed for applications in space. Due to launch mass and volume restrictions these mirrors will need to be much more flexible than traditional optics. The use of primary mirrors with these characteristics will lead to requirements for adaptive optics capable of correcting wave front errors with large amplitude relatively low spatial frequency aberrations. The use of low modulus membrane mirrors actuated with electrostatic attraction forces is a potential solution for this application. Several different electrostatic membrane mirrors are now available commercially. However, as the dynamic range requirement of the adaptive mirror is increased the separation distance between the membrane and the electrodes must increase to accommodate the required face sheet deformations. The actuation force applied to the mirror decreases inversely proportional to the square of the separation distance; thus for large dynamic ranges the voltage requirement can rapidly increase into the high voltage regime. Experimentation with mirrors operating in the KV range has shown that at the higher voltages a serious problem with electrostatic field cross coupling between actuators can occur. Voltage changes on individual actuators affect the voltage of other actuators making the system very difficult to control. A novel solution has been proposed that combines high voltage electrodes with mechanical actuation to overcome this problem. In this design an array of electrodes are mounted to a backing structure via light weight large dynamic range flextensional actuators. With this design the control input becomes the separation distance between the electrode and the mirror. The voltage on each of the actuators is set to a uniform relatively high voltage, thus the problem of cross talk between actuators is avoided and the favorable distributed load characteristic of electrostatic actuation is retained. Initial testing and modeling of this concept

  11. Aberration correction for transcranial photoacoustic tomography of primates employing adjunct image data

    PubMed Central

    Huang, Chao; Schoonover, Robert W.; Guo, Zijian; Schirra, Carsten O.; Anastasio, Mark A.; Wang, Lihong V.

    2012-01-01

    Abstract. A challenge in photoacoustic tomography (PAT) brain imaging is to compensate for aberrations in the measured photoacoustic data due to their propagation through the skull. By use of information regarding the skull morphology and composition obtained from adjunct x-ray computed tomography image data, we developed a subject-specific imaging model that accounts for such aberrations. A time-reversal-based reconstruction algorithm was employed with this model for image reconstruction. The image reconstruction methodology was evaluated in experimental studies involving phantoms and monkey heads. The results establish that our reconstruction methodology can effectively compensate for skull-induced acoustic aberrations and improve image fidelity in transcranial PAT. PMID:22734772

  12. Progress on PEEM3 - An Aberration Corrected X-Ray PhotoemissionElectron Microscope at the ALS

    SciTech Connect

    MacDowell, Alastair A.; Feng, J.; DeMello, A.; Doran, A.; Duarte,R.; Forest, E.; Kelez, N.; Marcus, M.A.; Miller, T.; Padmore, H.A.; Raoux, S.; Robin, D.; Scholl, A.; Schlueter, R.; Schmid, P.; Stohr, J.; Wan, W.; Wei, D.H.; Wu, Y.

    2006-05-20

    A new ultrahigh-resolution photoemission electron microscope called PEEM3 is being developed and built at the Advanced Light Source (ALS). An electron mirror combined with a much-simplified magnetic dipole separator is to be used to provide simultaneous correction of spherical and chromatic aberrations. It is installed on an elliptically polarized undulator (EPU) beamline, and will be operated with very high spatial resolution and high flux to study the composition, structure, electric and magnetic properties of complex materials. The instrument has been designed and is described. The instrumental hardware is being deployed in 2 phases. The first phase is the deployment of a standard PEEM type microscope consisting of the standard linear array of electrostatic electron lenses. The second phase will be the installation of the aberration corrected upgrade to improve resolution and throughput. This paper describes progress as the instrument enters the commissioning part of the first phase.

  13. AO-OCT for in vivo mouse retinal imaging: Application of adaptive lens in wavefornt sensorless aberration correction

    NASA Astrophysics Data System (ADS)

    Bonora, Stefano; Jian, Yifan; Pugh, Edward N.; Sarunic, Marinko V.; Zawadzki, Robert J.

    2014-03-01

    We demonstrate Adaptive optics - Optical Coherence Tomography (OCT) with modal sensorless Adaptive Optics correction with the use of novel Adaptive Lens (AL) applied for in-vivo imaging of mouse retinas. The AL can generate low order aberrations: defocus, astigmatism, coma and spherical aberration that were used in an adaptive search algorithm. Accelerated processing of the OCT data with a Graphic Processing Unit (GPU) permitted real time extraction of image projection total intensity for arbitrarily selected retinal depth plane to be optimized. Wavefront sensorless control is a viable option for imaging biological structures for which AOOCT cannot establish a reliable wavefront that could be corrected by wavefront corrector. Image quality improvements offered by adaptive lens with sensorless AO-OCT was evaluated on in vitro samples followed by mouse retina data acquired in vivo.

  14. Sub-micron spatial resolution of a micro-XAFS electrostatic microscope with bending magnet radiation: Performance assessments and prospects for aberration correction

    NASA Astrophysics Data System (ADS)

    Tonner, B. P.; Dunham, D.

    1994-08-01

    The X-ray photoemission electron microscope (XPEEM) has been shown to be a valuable tool for small-area X-ray absorption fine-structure (XAFS) spectroscopy, and for state-selected imaging. The instrument currently in regular operation on bending-magnet monochromators uses electrostatic optics to create an image of a sample surface in vacuum. The instrument can be operated on a wide variety of X-ray and VUV beamlines, and the spectral resolution is determined by the beamline monochromator. The spatial resolution is determined primarily by the aberrations of the immersion lens accelerating field and the objective lens, although other factors such as surface roughness play an important, though less fundamental role. We have tested the spatial resolution of micro-XAFS with a high quality test object, consisting of a free-standing circular zone plate made of gold. These tests confirm the assessment that chromatic aberration limits the performance of the optics, because of the wide range of kinetic energies of secondary electrons produced in XAFS spectroscopy, and the highly asymmetric intensity distribution of these secondaries. One attempt at solving the chromatic aberration problem is the use of an energy filter, which solves the problem by allowing only a narrow band of electrons to produce an image. We describe an alternative approach, based on chromatic aberration correction, which has great potential for an XPEEM instrument with extremely high transmission, and spatial resolution below 10 nm. We also point out the performance improvements to be expected when XPEEM is adapted to high-throughput undulator beamlines.

  15. Multiple sextupole system for the correction of third and higher order aberration

    DOEpatents

    Crewe, Albert V.

    1983-01-01

    A means is provided for compensating for third and higher order aberration in charged particle beam devices. The means includes two sextupoles with an intermediate focusing lens, all positioned between two focusing lenses.

  16. Higher-order aberrations and best-corrected visual acuity in Native American children with a high prevalence of astigmatism

    PubMed Central

    Miller, Joseph M.; Harvey, Erin M.; Schwiegerling, Jim

    2016-01-01

    Purpose To determine whether higher-order aberrations (HOAs) in children from a highly astigmatic population differ from population norms and whether HOAs are associated with astigmatism and reduced best-corrected visual acuity. Methods Subjects were 218 Tohono O’odham Native American children 5–9 years of age. Noncycloplegic HOA measurements were obtained with a handheld Shack-Hartmann sensor (SHS). Signed (z06s to z14s) and unsigned (z06u to z14u) wavefront aberration Zernike coefficients Z(3,−3) to Z(4,4) were rescaled for a 4 mm diameter pupil and compared to adult population norms. Cycloplegic refraction and best-corrected logMAR letter visual acuity (BCVA) were also measured. Regression analyses assessed the contribution of astigmatism (J0) and HOAs to BCVA. Results The mean root-mean-square (RMS) HOA of 0.191 ± 0.072 μm was significantly greater than population norms (0.100 ± 0.044 μm. All unsigned HOA coefficients (z06u to z14u) and all signed coefficients except z09s, z10s, and z11s were significantly larger than population norms. Decreased BCVA was associated with astigmatism (J0) and spherical aberration (z12u) but not RMS coma, with the effect of J0 about 4 times as great as z12u. Conclusions Tohono O’odham children show elevated HOAs compared to population norms. Astigmatism and unsigned spherical aberration are associated with decreased acuity, but the effects of spherical aberration are minimal and not clinically significant. PMID:26239206

  17. Open-loop wavefront sensing scheme for specimen aberrations correction in two-photon excited fluorescence microscopy

    NASA Astrophysics Data System (ADS)

    Aviles-Espinosa, Rodrigo; Andilla, Jordi; Porcar-Guezenec, Rafael; Levecq, Xavier; Artigas, David; Loza-Alvarez, Pablo

    2011-07-01

    The recent linkage between adaptive optics, a technique borrowed from astronomy and various imaging devices, has enabled to push forward their imaging capabilities by improving its contrast and resolution. A specific case is nonlinear microscopy (NLM) that, although it brings several inherent advantages (compared to linear fluorescence techniques) due to its nonlinear dependence on the excitation beam, its enhanced capabilities can be limited by the sample inhomogeneous structure. In this work, we demonstrate how these imaging capabilities can be enhanced by, employing adaptive optics in a two step correction process. Firstly, a closed-loop methodology aided by Shack-Hartman Wavefront sensing scheme is implemented for compensating the aberrations produced by the laser and the optical elements before the high numerical aperture microscope objective, resulting in a one-time calibration process. Then the residual aberrations are produced by the microscope objective and the sample. These are measured in a similar way as it is done in astronomy (employing a laser guide-star), using the two-photon excited fluorescence. The properties of this incoherent emission produced inside a test sample are compared to a genetically modified Caenorhabditis. elegans nematode expressing GFP showing that the emission of this protein (at 810nm) can be sensed efficiently with our WFS by modifying the exposure time. Therefore the recorded wavefront will capture the sample aberrations which are used to shape a deformable mirror in an open-loop configuration. This correction principle is demonstrated in a test sample by correcting aberrations in a "single-shot" resulting in a reduced sample exposure.

  18. Synthesis and Cs-Corrected Scanning Transmission Electron Microscopy Characterization of Multimetallic Nanoparticles

    NASA Astrophysics Data System (ADS)

    Khanal, Subarna; Bhattarai, Nabraj; Velázquez-Salazar, Jesus; Jose-Yacaman, Miguel; Subarna Khanal Team

    2014-03-01

    Multimetallic nanoparticles have been attracted greater attention both in materials science and nanotechnology due to its unique electronic, optical, biological, and catalytic properties lead by physiochemical interactions among different atoms and phases. The distinct features of multimetallic nanoparticles enhanced synergetic properties, large surface to volume ratio and quantum size effects ultimately lead to novel and wide range of possibilities for different applications than monometallic counterparts. For instance, PtPd, Pt/Cu, Au-Au3Cu, AgPd/Pt, AuCu/Pt and many other multimetallic nanoparticles have raised interest for their various applications in fuel cells, ethanol and methanol oxidation reactions, hydrogen storage, and so on. The nanostructures were analyzed by transmission electron microscopy (TEM) and by aberration-corrected scanning transmission electron microscopy (Cs-corrected STEM), in combination with high angle annular dark field (HAADF), bright field (BF), energy dispersive X-ray spectroscopy (EDS), and electron energy loss spectroscopy (EELS) detectors. These techniques allowed us to probe the structure at the atomic level of the nanoparticles revealing new structural information and elemental composition of the nanoparticles. The authors would like to acknowledge NSF grants DMR-1103730, ``Alloys at the Nanoscale: The Case of Nanoparticles Second Phase'' and NSF PREM Grant # DMR 0934218.

  19. Optical alignment influenced aberrations in laser beam delivery systems and their correction

    NASA Astrophysics Data System (ADS)

    Scaggs, Michael; Haas, Gil

    2015-03-01

    Industrial high power laser systems are often evaluated based upon spatial profile of the beam before they are brought to focus for processing materials. It is therefore often assumed that if the raw beam profile is good that the focus is equally as good. The possibility of having good optics and poor alignment or bad optics and good alignment and therefore not achieve a good focal spot is quite high due to the fact that a raw beam spatial profile does not manifest third order aberrations. In such instances the focal spot will contain aberrations when there are slightly misaligned, poor quality, high power optics in the system such as a beam expander or eye piece and objective of a 3-axis galvo. Likewise, if the beam itself is not on axis, the third order aberrations of astigmatism and coma are likely to appear but again not be seen in the unfocused beams spatial profile. The third order aberrations of astigmatism, coma and spherical aberration can significantly alter both the size and spatial profile at the focus resulting in out of spec performance. The impact of beam and zoom expanders and their alignment in beam delivery systems is investigated by measuring both the far field unfocused and the far field focus beams using an all passive beam waist analyzer system.

  20. Aberration-corrected concave grating for the mid-infrared spectrometer aboard the Infrared Telescope in Space.

    PubMed

    Onaka, T

    1995-02-01

    A mechanically ruled aberration-corrected concave grating was developed for use in the low-resolution mid-infrared spectrometer aboard the cryogenically cooled Infrared Telescope in Space. The design and the performance testing of the grating are reported. The spectrometer requires a wide spectral range (4.5-11.7 µm) and a wide field of view (8 × 8 arcmin) with a low wavelength resolution (Δλ ≤ 0.3 µm). The aberration-corrected concave grating provides a flat focal plane with a small aberration in the spatial direction compared with those caused by the finite size of the entrance slit. It also permits a simple design for the spectrometer, which is advantageous for applications in space cryogenic instruments. The measurements of the wavelength resolution and the spatial resolution are shown to be in good agreement with the predicted performance. The diffraction efficiency of the grating is more than 80% at the blaze wavelength (6 µm) and fairly high (>30%) over the entire wavelength range in question. The grating produces polarization of less than 10% for λ < 6.4 µm and of 10-20% for 6.7 µm <λ 9.7 µm. These results indicate the potential applicability of this type of grating to the wide-field IR spectroscopic observations. PMID:20963166

  1. Correlation-based aberration correction in the presence of inoperable elements.

    PubMed

    O'Donnell, M; Engeler, W E

    1992-01-01

    Estimation of phase aberrations using correlation processing between neighboring elements in a phased array is explored in the presence of inoperable elements. Using a CORDIC-based implementation of a complex baseband correlator, inactive elements can be identified simultaneous with correlation processing. Following detection of inoperable elements, a simple rerouting of the adaptive beam former is used to eliminate these elements from correlation analysis. Experimental results on a 3.33-MHz, 64-element array system with four contiguous, inactive elements demonstrate the robustness of the simple rerouting method for accurate phase aberration estimation. PMID:18267685

  2. Increase of penetration depth in real-time clinical epi-optoacoustic imaging: clutter reduction and aberration correction

    NASA Astrophysics Data System (ADS)

    Jaeger, Michael; Gashi, Kujtim; Peeters, Sara; Held, Gerrit; Preisser, Stefan; Gruenig, Michael; Frenz, Martin

    2014-03-01

    Optoacoustic (OA) imaging will experience broadest clinical application if implemented in epi-style with the irradiation optics and the acoustic probe integrated in a single probe. This will allow most flexible imaging of the human body in a combined system together with echo ultrasound (US). In such a multimodal combination, the OA signal could provide functional information within the anatomical context shown in the US image, similar to what is already done with colour flow imaging. Up to date, successful deep epi-OA imaging was difficult to achieve, owing to clutter and acoustic aberrations. Clutter signals arise from strong optical absorption in the region of tissue irradiation and strongly reduce contrast and imaging depth. Acoustic aberrations are caused by the inhomogeneous speed of sound and degrade the spatial resolution of deep tissue structures, further reducing contrast and thus imaging depth. In past years we have developed displacement-compensated averaging (DCA) for clutter reduction based on the clutter decorrelation that occurs when palpating the tissue using the ultrasound probe. We have now implemented real-time DCA on a research ultrasound system to evaluate its clutter reduction performance in freehand scanning of human volunteers. Our results confirm that DCA significantly improves image contrast and imaging depth, making clutter reduction a basic requirement for a clinically successful combination of epi-OA and US imaging. In addition we propose a novel technique which allows automatic full aberration correction of OA images, based on measuring the effect of aberration spatially resolved using echo US. Phantom results demonstrate that this technique allows spatially invariant diffraction-limited resolution in presence of a strong aberrator.

  3. Dynamic optical aberration correction with adaptive coded apertures techniques in conformal imaging

    NASA Astrophysics Data System (ADS)

    Li, Yan; Hu, Bin; Zhang, Pengbin; Zhang, Binglong

    2015-02-01

    Conformal imaging systems are confronted with dynamic aberration in optical design processing. In classical optical designs, for combination high requirements of field of view, optical speed, environmental adaption and imaging quality, further enhancements can be achieved only by the introduction of increased complexity of aberration corrector. In recent years of computational imaging, the adaptive coded apertures techniques which has several potential advantages over more traditional optical systems is particularly suitable for military infrared imaging systems. The merits of this new concept include low mass, volume and moments of inertia, potentially lower costs, graceful failure modes, steerable fields of regard with no macroscopic moving parts. Example application for conformal imaging system design where the elements of a set of binary coded aperture masks are applied are optimization designed is presented in this paper, simulation results show that the optical performance is closely related to the mask design and the reconstruction algorithm optimization. As a dynamic aberration corrector, a binary-amplitude mask located at the aperture stop is optimized to mitigate dynamic optical aberrations when the field of regard changes and allow sufficient information to be recorded by the detector for the recovery of a sharp image using digital image restoration in conformal optical system.

  4. Comparison of analytical and numerical approaches for CT-based aberration correction in transcranial passive acoustic imaging

    NASA Astrophysics Data System (ADS)

    Jones, Ryan M.; Hynynen, Kullervo

    2016-01-01

    Computed tomography (CT)-based aberration corrections are employed in transcranial ultrasound both for therapy and imaging. In this study, analytical and numerical approaches for calculating aberration corrections based on CT data were compared, with a particular focus on their application to transcranial passive imaging. Two models were investigated: a three-dimensional full-wave numerical model (Connor and Hynynen 2004 IEEE Trans. Biomed. Eng. 51 1693-706) based on the Westervelt equation, and an analytical method (Clement and Hynynen 2002 Ultrasound Med. Biol. 28 617-24) similar to that currently employed by commercial brain therapy systems. Trans-skull time delay corrections calculated from each model were applied to data acquired by a sparse hemispherical (30 cm diameter) receiver array (128 piezoceramic discs: 2.5 mm diameter, 612 kHz center frequency) passively listening through ex vivo human skullcaps (n  =  4) to emissions from a narrow-band, fixed source emitter (1 mm diameter, 516 kHz center frequency). Measurements were taken at various locations within the cranial cavity by moving the source around the field using a three-axis positioning system. Images generated through passive beamforming using CT-based skull corrections were compared with those obtained through an invasive source-based approach, as well as images formed without skull corrections, using the main lobe volume, positional shift, peak sidelobe ratio, and image signal-to-noise ratio as metrics for image quality. For each CT-based model, corrections achieved by allowing for heterogeneous skull acoustical parameters in simulation outperformed the corresponding case where homogeneous parameters were assumed. Of the CT-based methods investigated, the full-wave model provided the best imaging results at the cost of computational complexity. These results highlight the importance of accurately modeling trans-skull propagation when calculating CT-based aberration corrections

  5. Magnitude of speed of sound aberration corrections for ultrasound image guided radiotherapy for prostate and other anatomical sites

    SciTech Connect

    Fontanarosa, Davide; Meer, Skadi van der; Bloemen-van Gurp, Esther; Stroian, Gabriela; Verhaegen, Frank

    2012-08-15

    Purpose: The purpose of this work is to assess the magnitude of speed of sound (SOS) aberrations in three-dimensional ultrasound (US) imaging systems in image guided radiotherapy. The discrepancy between the fixed SOS value of 1540 m/s assumed by US systems in human soft tissues and its actual nonhomogeneous distribution in patients produces small but systematic errors of up to a few millimeters in the positions of scanned structures. Methods: A correction, provided by a previously published density-based algorithm, was applied to a set of five prostate, five liver, and five breast cancer patients. The shifts of the centroids of target structures and the change in shape were evaluated. Results: After the correction the prostate cases showed shifts up to 3.6 mm toward the US probe, which may explain largely the reported positioning discrepancies in the literature on US systems versus other imaging modalities. Liver cases showed the largest changes in volume of the organ, up to almost 9%, and shifts of the centroids up to more than 6 mm either away or toward the US probe. Breast images showed systematic small shifts of the centroids toward the US probe with a maximum magnitude of 1.3 mm. Conclusions: The applied correction in prostate and liver cancer patients shows positioning errors of several mm due to SOS aberration; the errors are smaller in breast cancer cases, but possibly becoming more important when breast tissue thickness increases.

  6. [Aberration corrected intraocular lens for microincision cataract surgery (MICS). Intraindividual comparison with a conventional lens - 1-year follow-up].

    PubMed

    Möglich, M; Häberle, H; Pham, D T; Wirbelauer, C

    2009-10-01

    Microincision cataract surgery (MICS) is an important advancement in the field of cataract surgery. This article compares an aberration corrected hydrophilic acrylic intraocular lens (IOL) having a hydrophobic surface for MICS with a one-piece hydrophobic acrylic IOL with respect to capsule sac stability, image quality, and after-cataract formation over the course of 1 year. The operations were performed as bimanual MICS or coaxial phacoemulsification. Overall the results after implantation of the IOL by MICS can be regarded as positive in comparison to the standard operation. PMID:18836727

  7. The use of symmetry to correct Larmor phase aberrations in spin echo scattering angle measurement

    NASA Astrophysics Data System (ADS)

    Pynn, Roger; Lee, W. T.; Stonaha, P.; Shah, V. R.; Washington, A. L.; Kirby, B. J.; Majkrzak, C. F.; Maranville, B. B.

    2008-06-01

    Spin echo scattering angle measurement (SESAME) is a sensitive interference technique for measuring neutron diffraction. The method uses waveplates or birefringent prisms to produce a phase separation (the Larmor phase) between the "up" and "down" spin components of a neutron wavefunction that is initially prepared in a state that is a linear combination of in-phase up and down components. For neutrons, uniformly birefringent optical elements can be constructed from closed solenoids with appropriately shaped cross sections. Such elements are inconvenient in practice, however, both because of the precision they demand in the control of magnetic fields outside the elements and because of the amount of material required in the neutron beam. In this paper, we explore a different option in which triangular-cross-section solenoids used to create magnetic fields for SESAME have gaps in one face, allowing the lines of magnetic flux to "leak out" of the solenoid. Although the resulting field inhomogeneity produces aberrations in the Larmor phase, the symmetry of the solenoid gaps causes the aberrations produced by neighboring pairs of triangular solenoids to cancel to a significant extent. The overall symmetry of the SESAME apparatus leads to further cancellations of aberrations, providing an architecture that is easy to construct and robust in performance.

  8. Full correction for spatially distributed speed-of-sound in echo ultrasound based on measuring aberration delays via transmit beam steering

    NASA Astrophysics Data System (ADS)

    Jaeger, Michael; Robinson, Elise; Günhan Akarçay, H.; Frenz, Martin

    2015-06-01

    Aberrations of the acoustic wave front, caused by spatial variations of the speed-of-sound, are a main limiting factor to the diagnostic power of medical ultrasound imaging. If not accounted for, aberrations result in low resolution and increased side lobe level, over all reducing contrast in deep tissue imaging. Various techniques have been proposed for quantifying aberrations by analysing the arrival time of coherent echoes from so-called guide stars or beacons. In situations where a guide star is missing, aperture-based techniques may give ambiguous results. Moreover, they are conceptually focused on aberrators that can be approximated as a phase screen in front of the probe. We propose a novel technique, where the effect of aberration is detected in the reconstructed image as opposed to the aperture data. The varying local echo phase when changing the transmit beam steering angle directly reflects the varying arrival time of the transmit wave front. This allows sensing the angle-dependent aberration delay in a spatially resolved way, and thus aberration correction for a spatially distributed volume aberrator. In phantoms containing a cylindrical aberrator, we achieved location-independent diffraction-limited resolution as well as accurate display of echo location based on reconstructing the speed-of-sound spatially resolved. First successful volunteer results confirm the clinical potential of the proposed technique.

  9. Transcranial passive acoustic mapping with hemispherical sparse arrays using CT-based skull-specific aberration corrections: a simulation study

    NASA Astrophysics Data System (ADS)

    Jones, Ryan M.; O'Reilly, Meaghan A.; Hynynen, Kullervo

    2013-07-01

    The feasibility of transcranial passive acoustic mapping with hemispherical sparse arrays (30 cm diameter, 16 to 1372 elements, 2.48 mm receiver diameter) using CT-based aberration corrections was investigated via numerical simulations. A multi-layered ray acoustic transcranial ultrasound propagation model based on CT-derived skull morphology was developed. By incorporating skull-specific aberration corrections into a conventional passive beamforming algorithm (Norton and Won 2000 IEEE Trans. Geosci. Remote Sens. 38 1337-43), simulated acoustic source fields representing the emissions from acoustically-stimulated microbubbles were spatially mapped through three digitized human skulls, with the transskull reconstructions closely matching the water-path control images. Image quality was quantified based on main lobe beamwidths, peak sidelobe ratio, and image signal-to-noise ratio. The effects on the resulting image quality of the source’s emission frequency and location within the skull cavity, the array sparsity and element configuration, the receiver element sensitivity, and the specific skull morphology were all investigated. The system’s resolution capabilities were also estimated for various degrees of array sparsity. Passive imaging of acoustic sources through an intact skull was shown possible with sparse hemispherical imaging arrays. This technique may be useful for the monitoring and control of transcranial focused ultrasound (FUS) treatments, particularly non-thermal, cavitation-mediated applications such as FUS-induced blood-brain barrier disruption or sonothrombolysis, for which no real-time monitoring techniques currently exist.

  10. A Hemispherical Sparse Phased Array Design For Low Frequency Transcranial Focused Ultrasound Applications Without Skull-Specific Phase Aberration Correction

    NASA Astrophysics Data System (ADS)

    Yin, Xiangtao; Hynynen, Kullervo

    2006-05-01

    A sparse large-element hemispherical phased array scheme was investigated for low frequency transcranial focused ultrasound applications without skull-specific phase aberration correction. The simulated transcranial focused beams in brain from the randomly distributed sparse array elements (0.25 MHz, 125 mm radius of curvature, 250 mm diameter, 50% sparsity of 953 square elements of 10 mm spacing) could be steered without skull specific aberration correction at 0.25 MHz. The 28 foci were on average 1.7±1.2 mm shifted from their intended locations. The average -3 dB beam width and length were 3.3±1.2 mm and 6.3±2.2 mm, respectively. The sidelobe levels ranged from 28% to 62% of the peak pressure values. The focal beam was steerable 35 mm laterally away from the transducer center axis and 30 mm axially in the transducer center axis when the sidelobe pressure values were 50% of or less than the peak pressure values. This allows the array to be mechanically aimed to one quarter of the brain and then electronically steered. The sparse array design offers a tradeoff between the best beam steering range and the manageable number of elements for a practical clinical system.

  11. MAGNETIC LIQUID DEFORMABLE MIRRORS FOR ASTRONOMICAL APPLICATIONS: ACTIVE CORRECTION OF OPTICAL ABERRATIONS FROM LOWER-GRADE OPTICS AND SUPPORT SYSTEM

    SciTech Connect

    Borra, E. F.

    2012-08-01

    Deformable mirrors are increasingly used in astronomy. However, they still are limited in stroke for active correction of high-amplitude optical aberrations. Magnetic liquid deformable mirrors (MLDMs) are a new technology that has the advantages of high-amplitude deformations and low costs. In this paper, we demonstrate extremely high strokes and interactuator strokes achievable by MLDMs which can be used in astronomical instrumentation. In particular, we consider the use of such a mirror to suggest an interesting application for the next generation of large telescopes. We present a prototype 91 actuator deformable mirror made of a magnetic liquid (ferrofluid). This mirror uses a technique that linearizes the response of such mirrors by superimposing a large and uniform magnetic field on the magnetic field produced by an array of small coils. We discuss experimental results that illustrate the performance of MLDMs. A most interesting application of MLDMs comes from the fact they could be used to correct the aberrations of large and lower optical quality primary mirrors held by simple support systems. We estimate basic parameters of the needed MLDMs, obtaining reasonable values.

  12. Transcranial passive acoustic mapping with hemispherical sparse arrays using CT-based skull-specific aberration corrections: a simulation study

    PubMed Central

    Jones, Ryan M.; O’Reilly, Meaghan A.; Hynynen, Kullervo

    2013-01-01

    The feasibility of transcranial passive acoustic mapping with hemispherical sparse arrays (30 cm diameter, 16 to 1372 elements, 2.48 mm receiver diameter) using CT-based aberration corrections was investigated via numerical simulations. A multi-layered ray acoustic transcranial ultrasound propagation model based on CT-derived skull morphology was developed. By incorporating skull-specific aberration corrections into a conventional passive beamforming algorithm (Norton and Won 2000 IEEE Trans. Geosci. Remote Sens. 38 1337–43), simulated acoustic source fields representing the emissions from acoustically-stimulated microbubbles were spatially mapped through three digitized human skulls, with the transskull reconstructions closely matching the water-path control images. Image quality was quantified based on main lobe beamwidths, peak sidelobe ratio, and image signal-to-noise ratio. The effects on the resulting image quality of the source’s emission frequency and location within the skull cavity, the array sparsity and element configuration, the receiver element sensitivity, and the specific skull morphology were all investigated. The system’s resolution capabilities were also estimated for various degrees of array sparsity. Passive imaging of acoustic sources through an intact skull was shown possible with sparse hemispherical imaging arrays. This technique may be useful for the monitoring and control of transcranial focused ultrasound (FUS) treatments, particularly non-thermal, cavitation-mediated applications such as FUS-induced blood-brain barrier disruption or sonothrombolysis, for which no real-time monitoring technique currently exists. PMID:23807573

  13. Tuning fifth-order aberrations in a Quadrupole-Octupole Corrector

    SciTech Connect

    Lupini, Andrew R; Pennycook, Stephen J

    2012-01-01

    The resolution of conventional electron microscopes is usually limited by spherical aberration. Microscopes equipped with aberration-correctors are then primarily limited by higher-order, chromatic, and misalignment aberrations. In particular the Nion third-order aberration correctors installed on machines with a low energy spread and possessing sophisticated alignment software were limited by the uncorrected fifth-order aberrations. Here we show how the Nion fifth-order aberration corrector can be used to adjust and reduce some of the fourth and fifth-order aberrations in a probe-corrected scanning transmission electron microscope.

  14. Bayesian-based aberration correction and numerical diffraction for improved lensfree on-chip microscopy of biological specimens.

    PubMed

    Wong, Alexander; Kazemzadeh, Farnoud; Jin, Chao; Wang, Xiao Yu

    2015-05-15

    Lensfree on-chip microscopy is an emerging imaging technique that can be used to visualize and study biological specimens without the need for imaging lens systems. Important issues that can limit the performance of lensfree on-chip microscopy include interferometric aberrations, acquisition noise, and image reconstruction artifacts. In this study, we introduce a Bayesian-based method for performing aberration correction and numerical diffraction that accounts for all three of these issues to improve the effective numerical aperture (NA) and signal-to-noise ratio (SNR) of the reconstructed microscopic image. The proposed method was experimentally validated using the USAF resolution target as well as real waterborne Anabaena flos-aquae samples, demonstrating improvements in NA by ∼25% over the standard method, and improvements in SNR of 2.8 and 8.2 dB in the reconstructed image when compared to the reconstructed images produced using the standard method and a maximum likelihood estimation method, respectively. PMID:26393707

  15. Letter: A method for the chromatic aberration correction of a laser time of-flight mass analyzer.

    PubMed

    Sysoeva, Elizaveta A; Sysoev, Alexander A

    2016-01-01

    The new ion-optical system of the laser time-of-flight (TOF) mass spectrometer on the basis of two tandem wedge-shape reflectors has been offered and implemented. A new method of correcting chromatic aberration by the ion energy was proposed that used a wire electrode unit with adjustable potentials. This unit allows one to adjust the local TOF of the ions in a narrow energy range ± (1-2)% within the total ion packet with an energy spread of ± 20%. The method reduces the duration of the ion packets by up to 1.5ns, which enables us to obtain the restriction of resolution at a level not worse than R ~ 10500 for a TOF ~35 µs. The aim of the project is to increase the separation of isobaric ions to improve the limit of detection of the laser TOF-MS for the analysis of high-purity samples. PMID:27553736

  16. Anisotropic aberration correction using region of interest based digital adaptive optics in Fourier domain OCT

    PubMed Central

    Kumar, Abhishek; Kamali, Tschackad; Platzer, René; Unterhuber, Angelika; Drexler, Wolfgang; Leitgeb, Rainer A.

    2015-01-01

    In this paper a numerical technique is presented to compensate for anisotropic optical aberrations, which are usually present across the lateral field of view in the out of focus regions, in high resolution optical coherence tomography and microscopy (OCT/OCM) setups. The recorded enface image field at different depths in the tomogram is digitally divided into smaller sub-regions or the regions of interest (ROIs), processed individually using subaperture based digital adaptive optics (DAO), and finally stitched together to yield a final image with a uniform diffraction limited resolution across the entire field of view (FOV). Using this method, a sub-micron lateral resolution is achieved over a depth range of 218 μmfor a nano-particle phantom sample imaged using a fiber based point scanning spectral domain (SD) OCM system with a limited depth of focus (DOF) of ~7 μmat a numerical aperture (NA) of 0.6. Thus, an increase in DOF by ~30x is demonstrated in this case. The application of this method is also shown in ex vivo mouse adipose tissue. PMID:25908999

  17. Three-dimensional transcranial ultrasound imaging with bilateral phase aberration correction of multiple isoplanatic patches: A pilot human study with microbubble contrast enhancement

    PubMed Central

    Lindsey, Brooks D.; Nicoletto, Heather A.; Bennett, Ellen R.; Laskowitz, Daniel T.; Smith, Stephen W.

    2013-01-01

    With stroke currently the second-leading cause of death globally, and 87% of all strokes classified as ischemic, the development of a fast, accessible, cost-effective approach for imaging occlusive stroke could have a significant impact on healthcare outcomes and costs. While clinical examination and standard CT alone do not provide adequate information for understanding the complex temporal events that occur during an ischemic stroke, ultrasound imaging is well-suited to the task of examining blood flow dynamics in real-time and may allow for localization of a clot. A prototype bilateral 3D ultrasound imaging system utilizing two matrix array probes on either side of the head allows for correction of skull-induced aberration throughout two entire phased array imaging volumes. We investigated the feasibility of applying this custom correction technique in 5 healthy volunteers with Definity® microbubble contrast enhancement. Subjects were scanned simultaneously via both temporal acoustic windows in 3D color flow mode. The number of color flow voxels above a common threshold increased due to aberration correction in 5/5 subjects, with a mean increase of 33.9%. The percentage of large arteries visualized in 3D color Doppler imaging increased from 46% without aberration correction to 60% with aberration correction. PMID:24239360

  18. Alpharetroviral Vector-mediated Gene Therapy for X-CGD: Functional Correction and Lack of Aberrant Splicing

    PubMed Central

    Kaufmann, Kerstin B.; Brendel, Christian; Suerth, Julia D.; Mueller-Kuller, Uta; Chen-Wichmann, Linping; Schwäble, Joachim; Pahujani, Shweta; Kunkel, Hana; Schambach, Axel; Baum, Christopher; Grez, Manuel

    2013-01-01

    Comparative integrome analysis has revealed that the most neutral integration pattern among retroviruses is attributed to alpharetroviruses. We chose X-linked chronic granulomatous disease (X-CGD) as model to evaluate the potential of self-inactivating (SIN) alpharetroviral vectors for gene therapy of monogenic diseases. Therefore, we combined the alpharetroviral vector backbone with the elongation factor-1α short promoter, both considered to possess a low genotoxic profile, to drive transgene (gp91phox) expression. Following efficient transduction transgene expression was sustained and provided functional correction of the CGD phenotype in a cell line model at low vector copy number. Further analysis in a murine X-CGD transplantation model revealed gene-marking of bone marrow cells and oxidase positive granulocytes in peripheral blood. Transduction of human X-CGD CD34+ cells provided functional correction up to wild-type levels and long-term expression upon transplantation into a humanized mouse model. In contrast to lentiviral vectors, no aberrantly spliced transcripts containing cellular exons fused to alpharetroviral sequences were found in transduced cells, implying that the safety profile of alpharetroviral vectors may extend beyond their neutral integration profile. Taken together, this highlights the potential of this SIN alpharetroviral system as a platform for new candidate vectors for future gene therapy of hematopoietic disorders. PMID:23207695

  19. Aberration-corrected X-ray spectrum imaging and Fresnel contrast to differentiate nanoclusters and cavities in helium-irradiated alloy 14YWT

    SciTech Connect

    Miller, Michael K; Parish, Chad M

    2014-01-01

    Helium accumulation negatively impacts structural materials used in neutron-irradiated environments, such as fission and fusion reactors. Next-generation fission and fusion reactors will require structural materials, such as steels, resistant to large neutron doses yet see service temperatures in the range most affected by helium embrittlement. Previous work has indicated the difficulty of experimentally differentiating nanometer-sized helium bubbles from the Ti-Y-O rich nanoclustsers (NCs) in radiation-tolerant nanostructured ferritic alloys (NFAs). Because the NCs are expected to sequester helium away from grain boundaries and reduce embrittlement, experimental methods to study simultaneously the NC and bubble populations are needed. In this study, aberration-corrected scanning transmission electron microscopy (STEM) results combining high-collection-efficiency X-ray spectrum images (SIs), multivariate statistical analysis (MVSA), and Fresnel-contrast bright-field STEM imaging have been used for such a purpose. Results indicate that Fresnel-contrast imaging, with careful attention to TEM-STEM reciprocity, differentiates bubbles from NCs, and MVSA of X-ray SIs unambiguously identifies NCs. Therefore, combined Fresnel-contrast STEM and X-ray SI is an effective STEM-based method to characterize helium-bearing NFAs.

  20. Aberration-corrected X-ray spectrum imaging and Fresnel contrast to differentiate nanoclusters and cavities in helium-irradiated alloy 14YWT.

    PubMed

    Parish, Chad M; Miller, Michael K

    2014-04-01

    Helium accumulation negatively impacts structural materials used in neutron-irradiated environments, such as fission and fusion reactors. Next-generation fission and fusion reactors will require structural materials, such as steels, that are resistant to large neutron doses yet see service temperatures in the range most affected by helium embrittlement. Previous work has indicated the difficulty of experimentally differentiating nanometer-sized cavities such as helium bubbles from the Ti-Y-O rich nanoclusters (NCs) in radiation-tolerant nanostructured ferritic alloys (NFAs). Because the NCs are expected to sequester helium away from grain boundaries and reduce embrittlement, experimental methods to study simultaneously the NC and bubble populations are needed. In this study, aberration-corrected scanning transmission electron microscopy (STEM) results combining high-collection-efficiency X-ray spectrum images (SIs), multivariate statistical analysis (MVSA), and Fresnel-contrast bright-field STEM imaging, have been used for such a purpose. Fresnel-contrast imaging, with careful attention to TEM-STEM reciprocity, differentiates bubbles from NCs. MVSA of X-ray SIs unambiguously identifies NCs. Therefore, combined Fresnel-contrast STEM and X-ray SI is an effective STEM-based method to characterize helium-bearing NFAs. PMID:24598435

  1. Computed Ultrasound Tomography in Echo mode (CUTE) of speed of sound for diagnosis and for aberration correction in pulse-echo sonography

    NASA Astrophysics Data System (ADS)

    Jaeger, Michael; Held, Gerrit; Preisser, Stefan; Peeters, Sara; Grünig, Michael; Frenz, Martin

    2014-03-01

    Sound speed as a diagnostic marker for various diseases of human tissue has been of interest for a while. Up to now, mostly transmission ultrasound computed tomography (UCT) was able to detect spatially resolved sound speed, and its promise as a diagnostic tool has been demonstrated. However, UCT is limited to acoustically transparent samples such as the breast. We present a novel technique where spatially resolved detection of sound speed can be achieved using conventional pulse-echo equipment in reflection mode. For this purpose, pulse-echo images are acquired under various transmit beam directions and a two-dimensional map of the sound speed is reconstructed from the changing phase of local echoes using a direct reconstruction method. Phantom results demonstrate that a high spatial resolution (1 mm) and contrast (0.5 % of average sound speed) can be achieved suitable for diagnostic purposes. In comparison to previous reflection-mode based methods, CUTE works also in a situation with only diffuse echoes, and its direct reconstruction algorithm enables real-time application. This makes it suitable as an addition to conventional clinical ultrasound where it has the potential to benefit diagnosis in a multimodal approach. In addition, knowledge of the spatial distribution of sound speed allows full aberration correction and thus improved spatial resolution and contrast of conventional B-mode ultrasound.

  2. Migration of Single Iridium Atoms and Tri-iridium Clusters on MgO Surfaces. Aberration-Corrected STEM Imaging and ab-initio Calculations

    SciTech Connect

    Han, Chang W.; Iddir, Hakim; Uzun, Alper; Curtiss, Larry A.; Browning, Nigel D.; Gates, Bruce C.; Ortalan, Volkan

    2015-11-06

    To address the challenge of fast, direct atomic-scale visualization of the diffusion of atoms and clusters on surfaces, we used aberration-corrected scanning transmission electron microscopy (STEM) with high scan speeds (as little as ~0.1 s per frame) to visualize the diffusion of (1) a heavy atom (Ir) on the surface of a support consisting of light atoms, MgO(100), and (2) an Ir3 cluster on MgO(110). Sequential Z-contrast images elucidate the diffusion mechanisms, including the hopping of Ir1 and the rotational migration of Ir3 as two Ir atoms remain anchored to the surface. Density functional theory (DFT) calculations provided estimates of the diffusion energy barriers and binding energies of the iridium species to the surfaces. The results show how the combination of fast-scan STEM and DFT calculations allow real-time visualization and fundamental understanding of surface diffusion phenomena pertaining to supported catalysts and other materials.

  3. High resolution structural and compositional mapping of the SrTiO3/LaFeO3 interface using chromatic aberration corrected energy filtered imaging

    NASA Astrophysics Data System (ADS)

    Kabius, Bernd; Houben, Lothar; Dwyer, Christian; Colby, Robert; Chambers, Scott A.; Dunin-Borkowski, Rafal

    2014-03-01

    Interfaces between insulating polar perovskites have demonstrated a wealth of electronic and magnetic properties. Understanding and predicting the properties of a specific interface requires atomic level knowledge of interface structure and chemistry. Electron microscopy is capable of this task, and has been frequently applied to oxide interfaces using a combination of high-angle angular dark field scanning transmission electron microscopy (HAADF-STEM) and electron energy-loss spectroscopy (EELS). Energy-filtered TEM (EFTEM) captures a full image for a given energy losses, allowing a larger field of view than typical for STEM-EELS in far less time. However, EFTEM has not, to date, demonstrated the spatial resolution of STEM-EELS due to the limits set by chromatic aberration Cc. This study of LaFeO3/SrTiO3 demonstrates that Cc correction enhances the resolution of EFTEM for elemental mapping, allowing a unit cell-by-unit cell analysis of the concentration gradients across the SrTiO3/LaFeO3 interface. The charge distribution at the interface will be discussed. The research was performed using EMSL, a national scientific user facility sponsored by the Department of Energy's Office of Biological and Environmental Research and located at Pacific Northwest National Laboratory

  4. Atomic-resolution study of dislocation structures and interfaces in poly-crystalline thin film CdTe using aberration-corrected STEM

    NASA Astrophysics Data System (ADS)

    Paulauskas, Tadas; Colegrove, Eric; Buurma, Chris; Kim, Moon; Klie, Robert

    2014-03-01

    Commercial success of CdTe-based thin film photovoltaic devices stems from its nearly ideal direct band gap which very effectively couples to Sun's light spectrum as well as ease of manufacturing and low cost of these modules. However, to further improve the conversion efficiency beyond 20 percent, it is important to minimize the harmful effects of grain boundaries and lattice defects in CdTe. Direct atomic-scale characterization is needed in order identify the carrier recombination centers. Likewise, it is necessary to confirm that passivants in CdTe, such as Cl, are able to diffuse and bind to the target defects. In this study, we characterize dislocation structures and grain boundaries in poly-crystalline CdTe using aberration-corrected cold-field emission scanning transmission electron microscopy (STEM). The chemical composition of Shockley partial, Frank and Lomer-Cottrell dislocations is examined via atomic column-resolved X-ray energy dispersive (XEDS) and electron energy-loss spectroscopies (EELS). Segregation of Cl towards dislocation cores and grain boundaries is shown in CdCl2 treated samples. We also investigate interfaces in ultra-high-vacuum bonded CdTe bi-crystals with pre-defined misorientation angles which are intended to mimic grain boundaries. Funded by: DOE EERE Sunshot Award EE0005956.

  5. Imaging screw dislocations at atomic resolution by aberration-corrected electron optical sectioning

    NASA Astrophysics Data System (ADS)

    Yang, H.; Lozano, J. G.; Pennycook, T. J.; Jones, L.; Hirsch, P. B.; Nellist, P. D.

    2015-06-01

    Screw dislocations play an important role in materials' mechanical, electrical and optical properties. However, imaging the atomic displacements in screw dislocations remains challenging. Although advanced electron microscopy techniques have allowed atomic-scale characterization of edge dislocations from the conventional end-on view, for screw dislocations, the atoms are predominantly displaced parallel to the dislocation line, and therefore the screw displacements are parallel to the electron beam and become invisible when viewed end-on. Here we show that screw displacements can be imaged directly with the dislocation lying in a plane transverse to the electron beam by optical sectioning using annular dark field imaging in a scanning transmission electron microscope. Applying this technique to a mixed [a+c] dislocation in GaN allows direct imaging of a screw dissociation with a 1.65-nm dissociation distance, thereby demonstrating a new method for characterizing dislocation core structures.

  6. Experimental demonstration of passive acoustic imaging in the human skull cavity using CT-based aberration corrections

    PubMed Central

    Jones, Ryan M.; O’Reilly, Meaghan A.; Hynynen, Kullervo

    2015-01-01

    Purpose: Experimentally verify a previously described technique for performing passive acoustic imaging through an intact human skull using noninvasive, computed tomography (CT)-based aberration corrections Jones et al. [Phys. Med. Biol. 58, 4981–5005 (2013)]. Methods: A sparse hemispherical receiver array (30 cm diameter) consisting of 128 piezoceramic discs (2.5 mm diameter, 612 kHz center frequency) was used to passively listen through ex vivo human skullcaps (n = 4) to acoustic emissions from a narrow-band fixed source (1 mm diameter, 516 kHz center frequency) and from ultrasound-stimulated (5 cycle bursts, 1 Hz pulse repetition frequency, estimated in situ peak negative pressure 0.11–0.33 MPa, 306 kHz driving frequency) Definity™ microbubbles flowing through a thin-walled tube phantom. Initial in vivo feasibility testing of the method was performed. The performance of the method was assessed through comparisons to images generated without skull corrections, with invasive source-based corrections, and with water-path control images. Results: For source locations at least 25 mm from the inner skull surface, the modified reconstruction algorithm successfully restored a single focus within the skull cavity at a location within 1.25 mm from the true position of the narrow-band source. The results obtained from imaging single bubbles are in good agreement with numerical simulations of point source emitters and the authors’ previous experimental measurements using source-based skull corrections O’Reilly et al. [IEEE Trans. Biomed. Eng. 61, 1285–1294 (2014)]. In a rat model, microbubble activity was mapped through an intact human skull at pressure levels below and above the threshold for focused ultrasound-induced blood–brain barrier opening. During bursts that led to coherent bubble activity, the location of maximum intensity in images generated with CT-based skull corrections was found to deviate by less than 1 mm, on average, from the position

  7. Reply to L.M. Brown et al. "Brief history of the Cambridge STEM aberration correction project and its progeny" in Ultramicroscopy 157, 88 (2015).

    PubMed

    Urban, K W; Rose, H

    2016-02-01

    We comment on a Short Communication recently published in Ultramicroscopy in which Brown et al. criticize our description of the time sequence of events in the development of aberration correction systems in electron optics during the 1990s put forward in the introduction to the Ultramicroscopy April 2015 Special Issue. We present an analysis of the published literature furnishing evidence that our description is correct. PMID:26624509

  8. Canopy induced aberration correction in airborne electro-optical imaging systems

    NASA Astrophysics Data System (ADS)

    Harder, James A.; Sprague, Michaelene W.

    2011-11-01

    An increasing number of electro-optical systems are being used by pilots in tactical aircraft. This means that the afore mentioned systems must operate through the aircrafts canopy, unfortunately the canopy functions as a less than ideal lens element in the electro-optical sensor optical path. The canopy serves first and foremost as an aircraft structural component, considerations like minimizing the drag co-efficient and the ability to survive bird strikes take precedence over achieving optimal optical characteristics. This paper describes how the authors characterized the optical characteristics of an aircraft canopy. Families of modulation transfer functions were generated, for various viewing geometries through the canopy and for various electro-optical system entrance pupil diameters. These functions provided us with the means to significantly reduce the effect of the canopy "lens" on the performance of a representative electro-optical system, using an Astigmatic Corrector Lens. A comparison of the electro-optical system performance with and without correction is also presented.

  9. Simultaneous fluorescence and high-resolution bright-field imaging with aberration correction over a wide field-of-view with Fourier ptychographic microscopy (FPM) (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Chung, Jaebum; Kim, Jinho; Ou, Xiaoze; Horstmeyer, Roarke; Yang, Changhuei

    2016-03-01

    We present a method to acquire both fluorescence and high-resolution bright-field images with correction for the spatially varying aberrations over a microscope's wide field-of-view (FOV). First, the procedure applies Fourier ptychographic microscopy (FPM) to retrieve the amplitude and phase of a sample, at a resolution that significantly exceeds the cutoff frequency of the microscope objective lens. At the same time, FPM algorithm is able to leverage on the redundancy within the set of acquired FPM bright-field images to estimate the microscope aberrations, which usually deteriorate in regions further away from the FOV's center. Second, the procedure acquires a raw wide-FOV fluorescence image within the same setup. Lack of moving parts allows us to use the FPM-estimated aberration map to computationally correct for the aberrations in the fluorescence image through deconvolution. Overlaying the aberration-corrected fluorescence image on top of the high-resolution bright-field image can be done with accurate spatial correspondence. This can provide means to identifying fluorescent regions of interest within the context of the sample's bright-field information. An experimental demonstration successfully improves the bright-field resolution of fixed, stained and fluorescently tagged HeLa cells by a factor of 4.9, and reduces the error caused by aberrations in a fluorescence image by 31%, over a field of view of 6.2 mm by 9.3 mm. For optimal deconvolution, we show the fluorescence image needs to have a signal-to-noise ratio of ~18.

  10. Utilization of the excimer laser and a moving piezoelectric mirror to accomplish the customized contact lens ablation to correct high-order aberrations

    NASA Astrophysics Data System (ADS)

    de Matos, Luciana; Yasuoka, Fátima M. M.; Schor, Paulo; de Oliveira, Enos; Bagnato, Vanderlei S.; Carvalho, Luis A. V.

    2014-02-01

    The use of the Hartman-Shack sensor in ophthalmology allowed the identification of higher-order aberrations, which make possible the search for methods to correct them. Customized refractive surgery is one of the most successful methods, although there are patients which cannot be submitted to this surgery due to a variety of abnormal limiting factors such as cornea thickness and quantity of higher-order aberrations. Being this an irreversible process, the alternative is to develop a non-surgical method. This work proposes a method to obtain personalized contact lenses to correct high-order aberrations via the development of a customized ablation system using an excimer laser and a moving piezoelectric mirror. The process to produce such lenses consists of four steps. 1) The map of total aberrations of the patient's eye is measured by using an aberrometer with a Hartman-Shack sensor. 2) The measured aberration map is used to determine the maps for correction and related distribution of laser pulses for the ablation process with the excimer laser. 3) The lens production is performed following the same principle as customized refractive surgery. 4) The quality control of the lens is evaluated by two tests. 4.1) The lens is measured by a non-commercial lensometer, which is assembled specially for this measurement, as the ones commercially available are not capable of measuring asymmetric and irregular surfaces. 4.2) The evaluation of the lens-eye system is made using the aberrometer of the first step in order to verify the residual aberrations. Here, the lenses are ablated with a customized refractive surgery system.

  11. Double-aberration corrected TEM/STEM of solid acid nanocatalysts in the development of pharmaceutical NSAIDS

    NASA Astrophysics Data System (ADS)

    Yoshida, K.; Shiju, N.; Brown, R.; Wright, I.; Boyes, E. D.; Gai, P. L.

    2012-07-01

    We report nanostructural and physico-chemical studies in the development of an efficient low temperature heterogeneous catalytic process for nonsteroidal anti-inflammatory drugs (NSAIDS) such as N-acetyl-p-aminophenol (paracetamol or acetaminophen) on tungstated zirconia nanocatalysts. Using a double-aberration corrected TEM/STEM, modified in-house for in-situ studies at the sub-Angstrom level, we directly observed in real-time, the dynamic precursor transformation to the active catalyst. We quantified the observations with catalytic activity studies for the NSAIDS. The studies have provided the direct evidence for single tungsten promoter atoms and surface WOx species of <= 0.35 nm, with nanoclusters of WOx (0.6 to 1nm), located at grain boundaries on the surface of the zirconia nanoparticles. The correlation between the nanostructure and catalytic activity indicates that the species create Brønsted acid sites highly active for the low temperature process. The results open up opportunities for developing green heterogeneous methods for pharmaceuticals.

  12. Glutamatergic transmission aberration: a major cause of behavioral deficits in a murine model of Down's syndrome.

    PubMed

    Kaur, Gurjinder; Sharma, Ajay; Xu, Wenjin; Gerum, Scott; Alldred, Melissa J; Subbanna, Shivakumar; Basavarajappa, Balapal S; Pawlik, Monika; Ohno, Masuo; Ginsberg, Stephen D; Wilson, Donald A; Guilfoyle, David N; Levy, Efrat

    2014-04-01

    Trisomy 21, or Down's syndrome (DS), is the most common genetic cause of intellectual disability. Altered neurotransmission in the brains of DS patients leads to hippocampus-dependent learning and memory deficiency. Although genetic mouse models have provided important insights into the genes and mechanisms responsible for DS-specific changes, the molecular mechanisms leading to memory deficits are not clear. We investigated whether the segmental trisomy model of DS, Ts[Rb(12.1716)]2Cje (Ts2), exhibits hippocampal glutamatergic transmission abnormalities and whether these alterations cause behavioral deficits. Behavioral assays demonstrated that Ts2 mice display a deficit in nest building behavior, a measure of hippocampus-dependent nonlearned behavior, as well as dysfunctional hippocampus-dependent spatial memory tested in the object-placement and the Y-maze spontaneous alternation tasks. Magnetic resonance spectra measured in the hippocampi revealed a significantly lower glutamate concentration in Ts2 as compared with normal disomic (2N) littermates. The glutamate deficit accompanied hippocampal NMDA receptor1 (NMDA-R1) mRNA and protein expression level downregulation in Ts2 compared with 2N mice. In concert with these alterations, paired-pulse analyses suggested enhanced synaptic inhibition and/or lack of facilitation in the dentate gyrus of Ts2 compared with 2N mice. Ts2 mice also exhibited disrupted synaptic plasticity in slice recordings of the hippocampal CA1 region. Collectively, these findings imply that deficits in glutamate and NMDA-R1 may be responsible for impairments in synaptic plasticity in the hippocampus associated with behavioral dysfunctions in Ts2 mice. Thus, these findings suggest that glutamatergic deficits have a significant role in causing intellectual disabilities in DS. PMID:24719089

  13. Comparison of 3-D Multi-Lag Cross-Correlation and Speckle Brightness Aberration Correction Algorithms on Static and Moving Targets

    PubMed Central

    Ivancevich, Nikolas M.; Dahl, Jeremy J.; Smith, Stephen W.

    2010-01-01

    Phase correction has the potential to increase the image quality of 3-D ultrasound, especially transcranial ultrasound. We implemented and compared 2 algorithms for aberration correction, multi-lag cross-correlation and speckle brightness, using static and moving targets. We corrected three 75-ns rms electronic aberrators with full-width at half-maximum (FWHM) auto-correlation lengths of 1.35, 2.7, and 5.4 mm. Cross-correlation proved the better algorithm at 2.7 and 5.4 mm correlation lengths (P < 0.05). Static cross-correlation performed better than moving-target cross-correlation at the 2.7 mm correlation length (P < 0.05). Finally, we compared the static and moving-target cross-correlation on a flow phantom with a skull casting aberrator. Using signal from static targets, the correction resulted in an average contrast increase of 22.2%, compared with 13.2% using signal from moving targets. The contrast-to-noise ratio (CNR) increased by 20.5% and 12.8% using static and moving targets, respectively. Doppler signal strength increased by 5.6% and 4.9% for the static and moving-targets methods, respectively. PMID:19942503

  14. 46 CFR 530.10 - Amendment, correction, cancellation, and electronic transmission errors.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 46 Shipping 9 2013-10-01 2013-10-01 false Amendment, correction, cancellation, and electronic... SHIPPING IN FOREIGN COMMERCE SERVICE CONTRACTS Filing Requirements § 530.10 Amendment, correction, cancellation, and electronic transmission errors. (a) Terms. When used in this section, the following...

  15. 46 CFR 530.10 - Amendment, correction, cancellation, and electronic transmission errors.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 46 Shipping 9 2012-10-01 2012-10-01 false Amendment, correction, cancellation, and electronic... SHIPPING IN FOREIGN COMMERCE SERVICE CONTRACTS Filing Requirements § 530.10 Amendment, correction, cancellation, and electronic transmission errors. (a) Terms. When used in this section, the following...

  16. Bidirectional synchronization and hierarchical error correction for robust image transmission

    NASA Astrophysics Data System (ADS)

    Li, HongZhi; Chen, Chang W.

    1998-12-01

    In this paper, we present a novel joint source and channel image coding scheme for noisy channel transmission. The proposed scheme consists of two innovative components: (1) Intelligent bi-directional synchronization, and (2) Layered bit-plane error protection. The bi-directional synchronization is able to recover the coding synchronization when any single or even when two consecutive synchronization codes are corrupted by the channel noise. With synchronized partition, unequal error protection for each bit-plane can be designed to suit for a wide range of channel environments. The hierarchical error protection strategy is based on the analysis of bit-plane error sensitivity, aiming at achieving an optimal joint source and channel coding when the compressed image data are transmitted over noisy channels. Experimental results over extensive channel simulations show that the proposed scheme outperforms the approach proposed by Sherwood and Zeger who have reported the best numerical results in the literature.

  17. Correct averaging in transmission radiography: Analysis of the inverse problem

    NASA Astrophysics Data System (ADS)

    Wagner, Michael; Hampel, Uwe; Bieberle, Martina

    2016-05-01

    Transmission radiometry is frequently used in industrial measurement processes as a means to assess the thickness or composition of a material. A common problem encountered in such applications is the so-called dynamic bias error, which results from averaging beam intensities over time while the material distribution changes. We recently reported on a method to overcome the associated measurement error by solving an inverse problem, which in principle restores the exact average attenuation by considering the Poisson statistics of the underlying particle or photon emission process. In this paper we present a detailed analysis of the inverse problem and its optimal regularized numerical solution. As a result we derive an optimal parameter configuration for the inverse problem.

  18. Transmission errors and forward error correction in embedded differential pulse code modulation

    NASA Astrophysics Data System (ADS)

    Goodman, D. J.; Sundberg, C.-E.

    1983-11-01

    Formulas are derived for the combined effects of quantization and transmission errors on embedded Differential Pulse Code Modulation (DPCM) performance. The present analysis, which is both more general and precise than previous work on transmission errors in digital communication of analog signals, includes as its special cases the conventional DPCM and Pulse code Modulation. An SNR formula is obtained in which the effects of source characteristics and the effects of transmission characteristics are clearly distinguishable. Also given in computationally convenient form are specialized formulas applying to uncoded transmission through a random-error channel, transmission through a slowly fading channel, and transmission with all or part of the DCPM signal being protected by an error-correcting code.

  19. Aberration-corrected aspheric grating designs for the Lyman/Far-Ultraviolet Spectroscopic Explorer high-resolution spectrograph - A comparison

    NASA Technical Reports Server (NTRS)

    Trout, Catherine; Content, David; Davila, Pam

    1992-01-01

    Two approaches to reducing the optical aberrations of concave diffraction gratings have been studied to obtain candidate grating designs for the Lyman/Far-Ultraviolet Spectroscopic Explorer mission. The first approach involves shaping the grating substrate while using straight and equally spaced grooves. The second approach involves using a gating substrate with a relatively simple figure and holographically controlling the groove curvature and spacing. Specific designs derived from both approaches are analyzed and compared.

  20. 46 CFR 530.10 - Amendment, correction, cancellation, and electronic transmission errors.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 46 Shipping 9 2010-10-01 2010-10-01 false Amendment, correction, cancellation, and electronic..., cancellation, and electronic transmission errors. (a) Terms. When used in this section, the following terms will have these meanings: (1) Amendment means any change to a service contract which has...

  1. Technique for narrow-band imaging in the far ultraviolet based on aberration-corrected holographic gratings.

    PubMed

    Wilkinson, E; Indebetouw, R; Beasley, M

    2001-07-01

    We have developed a new family of imaging spectrometer designs that combine the imaging power of two-element telescopes with the aberration control of first-generation holographic gratings. The resulting optical designs provide high spatial resolution over modest fields of view at selectable wavelengths. These all-reflective designs are particularly suited for narrow-band imaging below 1050 A, the wavelength below which there are no transmitting materials in the UV. We have developed designs to efficiently map the spatial distribution of UV-emitting material. This mapping capability is absent in current and future astronomical instruments but is crucial to the understanding of the nature of a variety of astrophysical phenomena. Although our examples focus on UV wavelengths, the design concept is applicable to any wavelength. PMID:11958267

  2. Quality Improvement Method using Double Error Correction in Burst Transmission Systems

    NASA Astrophysics Data System (ADS)

    Tsuchiya, Naosuke; Tomiyama, Shigenori; Tanaka, Kimio

    Recently, it has a tendency to reduce an error correction and flow control in order to realize a high speed transmission in a burst transmission systems such as ATM network, IP (Internet Protocol) network, frame relay and so on. Therefore a degradation of network quality, an information loss caused by buffer overflow and decrease of average bit error rate, are occurred, especially for high speed information such as high definition television signals, it is necessary to improve these degradations. This paper proposes one of the typical reconstruction methods of lost information and an improvement of average bit error rate. In order to analyse the degradation phenomena, the Gilbert model is introduced for burst errors and the Fluid flow model for buffer overflow. This method is applied to ATM network which mainly transmit a video signals and it makes clear that proposed method is useful for high speed transmission.

  3. Tuberculosis transmission in multiple correctional facilities--Kansas, 2002-2003.

    PubMed

    2004-08-20

    Tuberculosis (TB) is a substantial health concern in correctional facilities; inmates and employees are at high risk, and TB outbreaks can lead to transmission in surrounding communities. The Advisory Council for the Elimination of Tuberculosis (ACET) recommends that all correctional facilities have a written TB infection-control plan (TBICP). In September 2002, after diagnosis of smear-positive pulmonary TB in a prison inmate, the Kansas TB Control Program, with assistance from CDC, initiated a 6-month contact investigation. This report summarizes the results of that investigation, which determined that, while symptomatic for TB, the inmate had resided in three different jails and a state prison, placing hundreds of employees and other inmates at risk for TB infection. The circumstances of this case underscore the need for effective TBICPs to be implemented by trained employees in jails and prisons and for establishment of mechanisms to facilitate information-sharing between correctional facilities and local and state health departments. PMID:15318157

  4. Transmission-corrected x-ray fluorescence analysis of uranium and plutonium solutions using a dual transmission source

    SciTech Connect

    Ruhter, W.D.; Camp, D.C.

    1987-11-24

    The energy-dispersive x-ray fluorescence analysis (XRFA) technique has been implemented at several spent nuclear fuel reprocessing facilities for nondestructive measurements of uranium and/or plutonium concentrations in process streams and product storage tanks. An important factor in these quantitative measurements is the absorption of the fluoresced x-rays by the solution matrix, which must be taken into account to accurately quantify the U or Pu concentrations. We describe a new, accurate method using a dual transmission source of Gd-153 and Co-57 to correct for matrix effects. Results of measurements on uranium and plutonium solution standards show the methodology to be better than 0.5%, which includes statistical precision, over the concentration range from 1 to 250 g/l. 5 refs., 4 figs., 3 tabs.

  5. Design and Performance Characteristics of the ORNL AdvancedMicroscopy Laboratory and JEOL 2200FS-AC Aberration-CorrectedSTEM/TEM

    SciTech Connect

    Allard, Lawrence F.; Blom, Douglas A.; O'Keefe, Michael A.; Mishina, S.

    2005-02-15

    At ORNL, the new Advanced Microscopy Laboratory (AML) has recently been completed, with two aberration-corrected instruments installed, and two more planned in the near future to fill the 4-laboratory building. The installed JEOL 2200FS-AC has demonstrated aTEM information limit of 0.9A. This limit is expected given the measured instrument parameters (HT and OL power supply stabilities, beam energy spread, etc.), and illustrates that the environmental influences are not adversely affecting the instrument performance. In STEM high-angle annular dark-field (HA-ADF) mode, images of a thin Si crystal in<110>zone axis orientation, after primary aberrations in the illuminating beam were optimally corrected, showed a significant vibration effect. The microscope is fitted with three magnetically levitated turbo pumps (one on the column at about the specimen position,and two near floor level) that pump the Omega energy filter and detector chamber. These pumps run at 48,000 rpm, precisely equivalent to 800Hz. It was determined that the upper turbo pump was contributing essentially all of the 800Hz signal to the image, and in fact that the pump was defective. After replacing the pump with one significantly quieter than the original, the Si atomic column image and associated diffractogram(Fig. 4b) show a much-reduced effect of the 800Hz signal, but still some residual effect from the turbo pump. The upper pump will be removed from the main column to an adjacent frame on the floor, and will have a large-diameter, well-damped, pump line to the original connection to the column to effectively isolate the pump from the column. If the 800Hz signal results from mechanical vibrations, they will be damped, and if the signal results from acoustic coupling to the column, it can be damped by appropriate acoustic materials.

  6. Correction for dynamic bias error in transmission measurements of void fraction.

    PubMed

    Andersson, P; Sundén, E Andersson; Svärd, S Jacobsson; Sjöstrand, H

    2012-12-01

    Dynamic bias errors occur in transmission measurements, such as X-ray, gamma, or neutron radiography or tomography. This is observed when the properties of the object are not stationary in time and its average properties are assessed. The nonlinear measurement response to changes in transmission within the time scale of the measurement implies a bias, which can be difficult to correct for. A typical example is the tomographic or radiographic mapping of void content in dynamic two-phase flow systems. In this work, the dynamic bias error is described and a method to make a first-order correction is derived. A prerequisite for this method is variance estimates of the system dynamics, which can be obtained using high-speed, time-resolved data acquisition. However, in the absence of such acquisition, a priori knowledge might be used to substitute the time resolved data. Using synthetic data, a void fraction measurement case study has been simulated to demonstrate the performance of the suggested method. The transmission length of the radiation in the object under study and the type of fluctuation of the void fraction have been varied. Significant decreases in the dynamic bias error were achieved to the expense of marginal decreases in precision. PMID:23278029

  7. Correction for dynamic bias error in transmission measurements of void fraction

    NASA Astrophysics Data System (ADS)

    Andersson, P.; Sundén, E. Andersson; Svärd, S. Jacobsson; Sjöstrand, H.

    2012-12-01

    Dynamic bias errors occur in transmission measurements, such as X-ray, gamma, or neutron radiography or tomography. This is observed when the properties of the object are not stationary in time and its average properties are assessed. The nonlinear measurement response to changes in transmission within the time scale of the measurement implies a bias, which can be difficult to correct for. A typical example is the tomographic or radiographic mapping of void content in dynamic two-phase flow systems. In this work, the dynamic bias error is described and a method to make a first-order correction is derived. A prerequisite for this method is variance estimates of the system dynamics, which can be obtained using high-speed, time-resolved data acquisition. However, in the absence of such acquisition, a priori knowledge might be used to substitute the time resolved data. Using synthetic data, a void fraction measurement case study has been simulated to demonstrate the performance of the suggested method. The transmission length of the radiation in the object under study and the type of fluctuation of the void fraction have been varied. Significant decreases in the dynamic bias error were achieved to the expense of marginal decreases in precision.

  8. Comparison of Adaptive Optics and Phase-Conjugate Mirrors for Correction of Aberrations in Double-Pass Amplifiers

    NASA Astrophysics Data System (ADS)

    Jackel, Steven; Moshe, Inon; Lavi, Raphy

    2003-02-01

    Correction of birefringence-induced effects (depolarization and bipolar focusing) were achieved in double-pass amplifiers by use of a Faraday rotator between the laser rod and the retroreflecting optic. A necessary condition was ray retrace. Retrace was limited by imperfect conjugate-beam fidelity and by nonreciprocal refractive indices. We compared various retroreflectors: stimulated-Brillouin-scatter phase-conjugate mirrors (PCMs), PCMs with rod-to-PCM relay imaging (IPCM), IPCMs with astigmatism-correcting adaptive optics, and all-adaptive-optics imaging variable-radius mirrors. Results with flash-lamp-pumped, Nd:Cr:GSGG double-pass amplifiers showed the superiority of adaptive optics over nonlinear optics retroreflectors in terms of maximum average power, improved beam quality, and broader oscillator pulse duration /bandwidth operating range. Hybrid PCM-adaptive optics retroreflectors yielded intermediate power /beam-quality results.

  9. Comparison of adaptive optics and phase-conjugate mirrors for correction of aberrations in double-pass amplifiers.

    PubMed

    Jackel, Steven; Moshe, Inon; Lavi, Raphy

    2003-02-20

    Correction of birefringence-induced effects (depolarization and bipolar focusing) were achieved in double-pass amplifiers by use of a Faraday rotator between the laser rod and the retroreflecting optic. A necessary condition was ray retrace. Retrace was limited by imperfect conjugate-beam fidelity and by nonreciprocal refractive indices. We compared various retroreflectors: stimulated-Brillouin-scatter phase-conjugate mirrors (PCMs), PCMs with rod-to-PCM relay imaging (IPCM), IPCMs with astigmatism-correcting adaptive optics, and all-adaptive-optic imaging variable-radius mirrors. Results with flash-lamp-pumped, Nd:Cr:GSGG double-pass amplifiers showed the superiority of adaptive optics over nonlinear optic retroreflectors in terms of maximum average power, improved beam quality, and broader oscillator pulse duration/bandwidth operating range. Hybrid PCM-adaptive optics retroreflectors yielded intermediate power/beam-quality results. PMID:12617213

  10. Ongoing Transmission of Hepatitis B Virus Infection Among Inmates at a State Correctional Facility

    PubMed Central

    Khan, Amy J.; Simard, Edgar P.; Bower, William A.; Wurtzel, Heather L.; Khristova, Marina; Wagner, Karla D.; Arnold, Kathryn E.; Nainan, Omana V.; LaMarre, Madeleine; Bell, Beth P.

    2005-01-01

    Objectives. We sought to determine hepatitis B virus (HBV) infection prevalence, associated exposures, and incidence among male inmates at a state correctional facility. Methods. A cross-sectional serological survey was conducted in June 2000, and susceptible inmates were retested in June 2001. Results. At baseline, 230 inmates (20.5%; 95% confidence interval [CI]=18.2%, 22.9%) exhibited evidence of HBV infection, including 11 acute and 11 chronic infections. Inmates with HBV infection were more likely than susceptible inmates to have injected drugs (38.8% vs 18.0%; adjusted prevalence odds ratio [OR]=3.0; 95% CI=1.9, 4.9), to have had more than 25 female sex partners (27.7% vs 17.5%; adjusted prevalence OR=2.0; 95% CI=1.4, 3.0), and to have been incarcerated for more than 14 years (38.4% vs 17.6%; adjusted prevalence OR=1.7; 95% CI=1.1, 2.6). One year later, 18 (3.6%) showed evidence of new HBV infection. Among 19 individuals with infections, molecular analysis identified 2 clusters involving 10 inmates, each with a unique HBV sequence. Conclusions. We documented ongoing HBV transmission at a state correctional facility. Similar transmission may occur at other US correctional facilities and could be prevented by vaccination of inmates. PMID:16186457

  11. Reduction of large set data transmission using algorithmically corrected model-based techniques for bandwidth efficiency

    NASA Astrophysics Data System (ADS)

    Khair, Joseph Daniel

    Communication requirements and demands on deployed systems are increasing daily. This increase is due to the desire for more capability, but also, due to the changing landscape of threats on remote vehicles. As such, it is important that we continue to find new and innovative ways to transmit data to and from these remote systems, consistent with this changing landscape. Specifically, this research shows that data can be transmitted to a remote system effectively and efficiently with a model-based approach using real-time updates, called Algorithmically Corrected Model-based Technique (ACMBT), resulting in substantial savings in communications overhead. To demonstrate this model-based data transmission technique, a hardware-based test fixture was designed and built. Execution and analysis software was created to perform a series of characterizations demonstrating the effectiveness of the new transmission method. The new approach was compared to a traditional transmission approach in the same environment, and the results were analyzed and presented. A Figure of Merit (FOM) was devised and presented to allow standardized comparison of traditional and proposed data transmission methodologies alongside bandwidth utilization metrics. The results of this research have successfully shown the model-based technique to be feasible. Additionally, this research has opened the trade space for future discussion and implementation of this technique.

  12. Carbon-metal interfaces analyzed by aberration-corrected TEM: how copper and nickel nanoparticles interact with MWCNTs.

    PubMed

    Ilari, Gabriele M; Hage, Fredrik S; Zhang, Yucheng; Rossell, Marta D; Ramasse, Quentin M; Niederberger, Markus; Erni, Rolf

    2015-05-01

    Experimental confirmation for the stronger interaction of Ni with multi-walled carbon nanotubes (MWCNTs) compared to Cu with MWCNTs is presented. The interfaces between Cu (Ni) nanoparticles side-on oriented onto MWCNTs are analyzed with high spatial resolution electron energy-loss spectroscopy (EELS) of the carbon K-edge. The EEL spectra reveal a rehybridization from sp(2) to sp(3) hybridized carbon of the outermost MWCNT layer at the Ni interface, but no such rehybridization can be observed at the Cu interface. The EELS results are supported by transmission electron microscopy (TEM) images, which show a better wetting behavior of Ni and a smaller gap at the Ni-MWCNT interface, as compared to the corresponding Cu interfaces. The different behavior of Cu and Ni can be explained in terms of differing valence d-orbital occupancy. For the successful experimental demonstration of this effect the use of a soft chemical metal deposition technique is crucial. PMID:25836722

  13. Axial ultrasound B-scans of the entire eye with a 20-MHz linear array: correction of crystalline lens phase aberration by applying Fermat's principle.

    PubMed

    Mateo, Tony; Chang, Alexandre; Mofid, Yassine; Pisella, Pierre-Jean; Ossant, Frederic

    2014-11-01

    In ophthalmic ultrasonography the crystalline lens is known to be the main source of phase aberration, causing a significant decrease in resolution and distortion effects on axial B-scans. This paper proposes a computationally efficient method to correct the phase aberration arising from the crystalline lens, including refraction effects using a bending ray tracing approach based on Fermat's principle. This method is used as a basis to perform eye-adapted beamforming (BF), with appropriate focusing delays for a 128-element 20-MHz linear array in both emission and reception. Implementation was achieved on an in-house developed experimental ultrasound scanning device, the ECODERM. The proposed BF was tested in vitro by imaging a wire phantom through an eye phantom consisting of a synthetic gelatin lens anatomically set up in an appropriate liquid (turpentine) to approach the in vivo velocity ratio. Both extremes of accommodation shapes of the human crystalline lens were investigated. The performance of the developed BF was evaluated in relation to that in homogeneous medium and compared to a conventional delay-and-sum (DAS) BF and a second adapted BF which was simplified to ignore the lens refraction. Global expectations provided by our method with the transducer array are reviewed by an analysis quantifying both image quality and spatial fidelity, as well as the detrimental effects of a crystalline lens in conventional reconstruction. Compared to conventional array imaging, the results indicated a two-fold improvement in the lateral resolution, greater sensitivity and a considerable reduction of spatial distortions that were sufficient to envisage reliable biometry directly in B-mode, especially phakometry. PMID:24988589

  14. Transmission of multidrug-resistant tuberculosis among immunocompromised persons in a correctional system--New York, 1991.

    PubMed

    1992-07-17

    During 1990 and 1991, nosocomial transmission of multidrug-resistant tuberculosis (MDR-TB) was documented in four hospitals in New York and Florida. Subsequently, additional MDR-TB outbreaks have been investigated by CDC. This report summarizes preliminary results of an investigation of transmission of MDR-TB in a correctional facility in New York. PMID:1630427

  15. Sunlight Transmission through Desert Dust and Marine Aerosols: Diffuse Light Corrections to Sun Photometry and Pyrheliometry

    NASA Technical Reports Server (NTRS)

    Russell, P. B.; Livingston, J. M.; Dubovik, O.; Ramirez, S. A.; Wang, J.; Redemann, J.; Schmid, B.; Box, M.; Holben, B. N.

    2003-01-01

    Desert dust and marine aerosols are receiving increased scientific attention because of their prevalence on intercontinental scales and their potentially large effects on Earth radiation and climate, as well as on other aerosols, clouds, and precipitation. The relatively large size of desert dust and marine aerosols produces scattering phase functions that are strongly forward- peaked. Hence, Sun photometry and pyrheliometry of these aerosols are more subject to diffuse-light errors than is the case for smaller aerosols. Here we quantify these diffuse-light effects for common Sun photometer and pyrheliometer fields of view (FOV), using a data base on dust and marine aerosols derived from (1) AERONET measurements of sky radiance and solar beam transmission and (2) in situ measurements of aerosol layer size distribution and chemical composition. Accounting for particle non-sphericity is important when deriving dust size distribution from both AERONET and in situ aerodynamic measurements. We express our results in terms of correction factors that can be applied to Sun photometer and pyrheliometer measurements of aerosol optical depth (AOD). We find that the corrections are negligible (less than approximately 1% of AOD) for Sun photometers with narrow FOV (half-angle eta less than degree), but that they can be as large as 10% of AOD at 354 nm wavelength for Sun photometers with eta = 1.85 degrees. For pyrheliometers (which can have eta up to approximately 2.8 degrees), corrections can be as large as 16% at 354 nm. We find that AOD correction factors are well correlated with AOD wavelength dependence (hence Angstrom exponent). We provide best-fit equations for determining correction factors from Angstrom exponents of uncorrected AOD spectra, and we demonstrate their application to vertical profiles of multiwavelength AOD.

  16. The atomic structural dynamics of γ-Al2O3 supported Ir-Pt nanocluster catalysts prepared from a bimetallic molecular precursor: a study using aberration-corrected electron microscopy and X-ray absorption spectroscopy.

    PubMed

    Small, Matthew W; Sanchez, Sergio I; Menard, Laurent D; Kang, Joo H; Frenkel, Anatoly I; Nuzzo, Ralph G

    2011-03-16

    This study describes a prototypical, bimetallic heterogeneous catalyst: compositionally well-defined Ir-Pt nanoclusters with sizes in the range of 1-2 nm supported on γ-Al(2)O(3). Deposition of the molecular bimetallic cluster [Ir(3)Pt(3)(μ-CO)(3)(CO)(3)(η-C(5)Me(5))(3)] on γ-Al(2)O(3), and its subsequent reduction with hydrogen, provides highly dispersed supported bimetallic Ir-Pt nanoparticles. Using spherical aberration-corrected scanning transmission electron microscopy (C(s)-STEM) and theoretical modeling of synchrotron-based X-ray absorption spectroscopy (XAS) measurements, our studies provide unambiguous structural assignments for this model catalytic system. The atomic resolution C(s)-STEM images reveal strong and specific lattice-directed strains in the clusters that follow local bonding configurations of the γ-Al(2)O(3) support. Combined nanobeam diffraction (NBD) and high-resolution transmission electron microscopy (HRTEM) data suggest the polycrystalline γ-Al(2)O(3) support material predominantly exposes (001) and (011) surface planes (ones commensurate with the zone axis orientations frequently exhibited by the bimetallic clusters). The data reveal that the supported bimetallic clusters exhibit complex patterns of structural dynamics, ones evidencing perturbations of an underlying oblate/hemispherical cuboctahedral cluster-core geometry with cores that are enriched in Ir (a result consistent with models based on surface energetics, which favor an ambient cluster termination by Pt) due to the dynamical responses of the M-M bonding to the specifics of the adsorbate and metal-support interactions. Taken together, the data demonstrate that strong temperature-dependent charge-transfer effects occur that are likely mediated variably by the cluster-support, cluster-adsorbate, and intermetallic bonding interactions. PMID:21341654

  17. Aberration correction in double-pass amplifiers through the use of phase-conjugate mirrors and/or adaptive optics

    NASA Astrophysics Data System (ADS)

    Jackel, Steven M.; Moshe, Inon; Lavi, Raphael

    2001-04-01

    Corrrection of birefringence induced effects (depolarization and bipolar focusing) was achieved in double-pass amplifiers using a Faraday rotator placed between the laser rod and the retroreflecting optic. A necessary condition was that each ray in the beam retraced its path through the amplifying medium. Retrace was limited by imperfect conjugate-beam fidelity and by nonreciprocal double-pass indices of refraction. We compare various retroreflectors: stimulated Brillouin scatter phase-conjugate-mirrors (PCMs), PCMs with relay lenses to image the rod principal plane onto the PCM entrance aperture (IPCMs), IPCMs with external, adaptively-adjusted, astigmatism-correcting cylindrical doublets, and all adaptive optics imaging variable-radius-mirrors (IVRMs). Results with flashlamp pumped, Nd:Cr:GSGG double-pass amplifiers show that average output power increased fivefold with a Faraday rotator plus complete nonlinear optics retroreflector package (IPCM+cylindrical zoom), and that this represents an 80% increase over the power achieved using just a PCM. Far better results are, however, achieved with an IVRM.

  18. Adaptive optics full-field OCT: a resolution almost insensitive to aberrations (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Xiao, Peng; Fink, Mathias; Boccara, A. Claude

    2016-03-01

    A Full-Field OCT (FFOCT) setup coupled to a compact transmissive liquid crystal spatial light modulator (LCSLM) is used to induce or correct aberrations and simulate eye examinations. To reduce the system complexity, strict pupil conjugation was abandoned. During our work on quantifying the effect of geometrical aberrations on FFOCT images, we found that the image resolution is almost insensitive to aberrations. Indeed if the object channel PSF is distorted, its interference with the reference channel conserves the main feature of an unperturbed PSF with only a reduction of the signal level. This unique behavior is specific to the use of a spatially incoherent illumination. Based on this, the FFOCT image intensity was used as the metric for our wavefront sensorless correction. Aberration correction was first conducted on an USAF resolution target with the LSCLM as both aberration generator and corrector. A random aberration mask was induced, and the low-order Zernike Modes were corrected sequentially according to the intensity metric function optimization. A Ficus leaf and a fixed mouse brain tissue slice were also imaged to demonstrate the correction of sample self-induced wavefront distortions. After optimization, more structured information appears for the leaf imaging. And the high-signal fiber-like myelin fiber structures were resolved much more clearly after the whole correction process for mouse brain imaging. Our experiment shows the potential of this compact AO-FFOCT system for aberration correction imaging. This preliminary approach that simulates eyes aberrations correction also opens the path to a simple implementation of FFOCT adaptive optics for retinal examinations.

  19. Cosmic Aberration, and Its Correction

    ERIC Educational Resources Information Center

    Dixon, Robert

    2011-01-01

    Because the speed of light is finite, the further we look into space, the earlier we see. A galaxy seen 50 million light years away is 50 million years ago. How far out in space and how far back in time can we expect to see, and what should it look like? To a first approximation and ignoring local galactic interactions, the Hubble model of the…

  20. Observation of Cu nanometre scale clusters formed in Fe85Si2B8P4Cu1 nanocrystalline soft magnetic alloy by a spherical aberration-corrected TEM/STEM

    NASA Astrophysics Data System (ADS)

    Nishijima, Masahiko; Matsuura, Makoto; Zhang, Yan; Makino, Akihiro

    2015-05-01

    Microstructure of a nanocrystalline soft magnetic Fe85Si2B8P4Cu1 alloy (NANOMET®) was investigated by the state of the art spherical aberration-corrected TEM/STEM. Observation by TEM shows that the microstructure of NANOMET® heat treated at 738 K for 600 s which exhibits the optimum soft magnetic properties has homogeneously distributed bcc-Fe nanocrystallites with the average grain size of 30 nm embedded in an amorphous matrix. Elemental mappings indicate that P is excluded from bcc-Fe grains and enriched outside the grains, which causes to retard the grain growth of bcc-Fe crystallites. The aberration-corrected STEM-EDS analysis with the ultrafine electron probe successfully proved that Cu atoms form nanometre scale clusters inside and/or outside the bcc-Fe nanocrystallites.

  1. Systematic error of lidar profiles caused by a polarization-dependent receiver transmission: quantification and error correction scheme.

    PubMed

    Mattis, Ina; Tesche, Matthias; Grein, Matthias; Freudenthaler, Volker; Müller, Detlef

    2009-05-10

    Signals of many types of aerosol lidars can be affected with a significant systematic error, if depolarizing scatterers are present in the atmosphere. That error is caused by a polarization-dependent receiver transmission. In this contribution we present an estimation of the magnitude of this systematic error. We show that lidar signals can be biased by more than 20%, if linearly polarized laser light is emitted, if both polarization components of the backscattered light are measured with a single detection channel, and if the receiver transmissions for these two polarization components differ by more than 50%. This signal bias increases with increasing ratio between the two transmission values (transmission ratio) or with the volume depolarization ratio of the scatterers. The resulting error of the particle backscatter coefficient increases with decreasing backscatter ratio. If the particle backscatter coefficients are to have an accuracy better than 5%, the transmission ratio has to be in the range between 0.85 and 1.15. We present a method to correct the measured signals for this bias. We demonstrate an experimental method for the determination of the transmission ratio. We use collocated measurements of a lidar system strongly affected by this signal bias and an unbiased reference system to verify the applicability of the correction scheme. The errors in the case of no correction are illustrated with example measurements of fresh Saharan dust. PMID:19424398

  2. Polarization Aberrations

    NASA Technical Reports Server (NTRS)

    Mcguire, James P., Jr.; Chipman, Russell A.

    1990-01-01

    The analysis of the polarization characteristics displayed by optical systems can be divided into two categories: geometrical and physical. Geometrical analysis calculates the change in polarization of a wavefront between pupils in an optical instrument. Physical analysis propagates the polarized fields wherever the geometrical analysis is not valid, i.e., near the edges of stops, near images, in anisotropic media, etc. Polarization aberration theory provides a starting point for geometrical design and facilitates subsequent optimization. The polarization aberrations described arise from differences in the transmitted (or reflected) amplitudes and phases at interfaces. The polarization aberration matrix (PAM) is calculated for isotropic rotationally symmetric systems through fourth order and includes the interface phase, amplitude, linear diattenuation, and linear retardance aberrations. The exponential form of Jones matrices used are discussed. The PAM in Jones matrix is introduced. The exact calculation of polarization aberrations through polarization ray tracing is described. The report is divided into three sections: I. Rotationally Symmetric Optical Systems; II. Tilted and Decentered Optical Systems; and Polarization Analysis of LIDARs.

  3. Quantitative analysis of radiation-induced chromosome aberrations.

    PubMed

    Sachs, R K; Levy, D; Hahnfeldt, P; Hlatky, L

    2004-01-01

    We review chromosome aberration modeling and its applications, especially to biodosimetry and to characterizing chromosome geometry. Standard results on aberration formation pathways, randomness, dose-response, proximity effects, transmissibility, kinetics, and relations to other radiobiological endpoints are summarized. We also outline recent work on graph-theoretical descriptions of aberrations, Monte-Carlo computer simulations of aberration spectra, software for quantifying aberration complexity, and systematic links of apparently incomplete with complete or truly incomplete aberrations. PMID:15162028

  4. Optimization of attenuation correction for positron emission tomography studies of thorax and pelvis using count-based transmission scans.

    PubMed

    Boellaard, R; van Lingen, A; van Balen, S C M; Lammertsma, A A

    2004-02-21

    The quality of thorax and pelvis transmission scans and therefore of attenuation correction in PET depends on patient thickness and transmission rod source strength. The purpose of the present study was to assess the feasibility of using count-based transmission scans, thereby guaranteeing more consistent image quality and more precise quantification than with fixed transmission scan duration. First, the relation between noise equivalent counts (NEC) of 10 min calibration transmission scans and rod source activity was determined over a period of 1.5 years. Second, the relation between transmission scan counts and uniform phantom diameter was studied numerically, determining the relative contribution of counts from lines of response passing through the phantom as compared with the total number of counts. Finally, the relation between patient weight and transmission scan duration was determined for 35 patients, who were scanned at the level of thorax or pelvis. After installation of new rod sources, the NEC of transmission scans first increased slightly (5%) with decreasing rod source activity and after 3 months decreased with a rate of 2-3% per month. The numerical simulation showed that the number of transmission scan counts from lines of response passing through the phantom increased with phantom diameter up to 7 cm. For phantoms larger than 7 cm, the number of these counts decreased at approximately the same rate as the total number of transmission scan counts. Patient data confirmed that the total number of transmission scan counts decreased with increasing patient weight with about 0.5% kg(-1). It can be concluded that count-based transmission scans compensate for radioactive decay of the rod sources. With count-based transmission scans, rod sources can be used for up to 1.5 years at the cost of a 50% increased transmission scan duration. For phantoms with diameters of more than 7 cm and for patients scanned at the level of thorax or pelvis, use of count

  5. 46 CFR 531.8 - Amendment, correction, cancellation, and electronic transmission errors.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... transmission errors. 531.8 Section 531.8 Shipping FEDERAL MARITIME COMMISSION REGULATIONS AFFECTING OCEAN..., cancellation, and electronic transmission errors. (a) Amendment. (1) NSAs may be amended by mutual agreement of.... (c) Electronic transmission errors. (1) An authorized person who experiences a purely...

  6. 46 CFR 530.10 - Amendment, correction, cancellation, and electronic transmission errors.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... transmission errors. 530.10 Section 530.10 Shipping FEDERAL MARITIME COMMISSION REGULATIONS AFFECTING OCEAN..., cancellation, and electronic transmission errors. (a) Terms. When used in this section, the following terms... in appendix A to this part. (d) Electronic transmission errors. An authorized person who...

  7. 46 CFR 530.10 - Amendment, correction, cancellation, and electronic transmission errors.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... transmission errors. 530.10 Section 530.10 Shipping FEDERAL MARITIME COMMISSION REGULATIONS AFFECTING OCEAN..., cancellation, and electronic transmission errors. (a) Terms. When used in this section, the following terms... in appendix A to this part. (d) Electronic transmission errors. An authorized person who...

  8. 46 CFR 531.8 - Amendment, correction, cancellation, and electronic transmission errors.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... transmission errors. 531.8 Section 531.8 Shipping FEDERAL MARITIME COMMISSION REGULATIONS AFFECTING OCEAN..., cancellation, and electronic transmission errors. (a) Amendment. (1) NSAs may be amended by mutual agreement of.... (c) Electronic transmission errors. (1) An authorized person who experiences a purely...

  9. Correction.

    PubMed

    2015-11-01

    In the article by Heuslein et al, which published online ahead of print on September 3, 2015 (DOI: 10.1161/ATVBAHA.115.305775), a correction was needed. Brett R. Blackman was added as the penultimate author of the article. The article has been corrected for publication in the November 2015 issue. PMID:26490278

  10. Correction.

    PubMed

    2015-12-01

    In the article by Narayan et al (Narayan O, Davies JE, Hughes AD, Dart AM, Parker KH, Reid C, Cameron JD. Central aortic reservoir-wave analysis improves prediction of cardiovascular events in elderly hypertensives. Hypertension. 2015;65:629–635. doi: 10.1161/HYPERTENSIONAHA.114.04824), which published online ahead of print December 22, 2014, and appeared in the March 2015 issue of the journal, some corrections were needed.On page 632, Figure, panel A, the label PRI has been corrected to read RPI. In panel B, the text by the upward arrow, "10% increase in kd,” has been corrected to read, "10% decrease in kd." The corrected figure is shown below.The authors apologize for these errors. PMID:26558821

  11. Correction

    NASA Astrophysics Data System (ADS)

    1995-04-01

    Seismic images of the Brooks Range, Arctic Alaska, reveal crustal-scale duplexing: Correction Geology, v. 23, p. 65 68 (January 1995) The correct Figure 4A, for the loose insert, is given here. See Figure 4A below. Corrected inserts will be available to those requesting copies of the article from the senior author, Gary S. Fuis, U.S. Geological Survey, 345 Middlefield Road, Menlo Park, CA 94025. Figure 4A. P-wave velocity model of Brooks Range region (thin gray contours) with migrated wide-angle reflections (heavy red lines) and migreated vertical-incidence reflections (short black lines) superimposed. Velocity contour interval is 0.25 km/s; 4,5, and 6 km/s contours are labeled. Estimated error in velocities is one contour interval. Symbols on faults shown at top are as in Figure 2 caption.

  12. 46 CFR 531.8 - Amendment, correction, cancellation, and electronic transmission errors.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... SHIPPING IN FOREIGN COMMERCE NVOCC SERVICE ARRANGEMENTS Filing Requirements § 531.8 Amendment, correction... the NSA shall be re-rated according to the otherwise applicable tariff provisions. (e) If the... 46 Shipping 9 2010-10-01 2010-10-01 false Amendment, correction, cancellation, and...

  13. Determination of gamma-ray self-attenuation correction in environmental samples by combining transmission measurements and Monte Carlo simulations.

    PubMed

    Šoštarić, Marko; Babić, Dinko; Petrinec, Branko; Zgorelec, Željka

    2016-07-01

    We develop a simple and widely applicable method for determining the self-attenuation correction in gamma-ray spectrometry on environmental samples. The method relies on measurements of the transmission of photons over the matrices of a calibration standard and an analysed sample. Results of this experiment are used in subsequent Monte Carlo simulations in which we first determine the linear attenuation coefficients (μ) of the two matrices and then the self-attenuation correction for the analysed sample. The method is validated by reproducing, over a wide energy range, the literature data for the μ of water. We demonstrate the use of the method on a sample of sand, for which we find that the correction is considerable below ~400keV, where many naturally occurring radionuclides emit gamma rays. At the lowest inspected energy (~60keV), one measures an activity that is by a factor of ~1.8 smaller than its true value. PMID:27157125

  14. Mapping magnetism with atomic resolution using aberrated electron probes

    NASA Astrophysics Data System (ADS)

    Idrobo, Juan; Rusz, Ján; McGuire, Michael A.; Symons, Christopher T.; Vatsavai, Ranga Raju; Lupini, Andrew R.

    2015-03-01

    In this talk, we report a direct experimental real-space mapping of magnetic circular dichroism with atomic resolution in aberration-corrected scanning transmission electron microscopy (STEM). Using an aberrated electron probe with customized phase distribution, we reveal with electron energy-loss (EEL) spectroscopy the checkerboard antiferromagnetic ordering of Mn moments in LaMnAsO by observing a dichroic signal in the Mn L-edge. The aberrated probes allow the collection of EEL spectra using the transmitted beam, which results in a magnetic circular dichroic signal with intrinsically larger signal-to-noise ratios than those obtained via nanodiffraction techniques (where most of the transmitted electrons are discarded). The novel experimental setup presented here, which can easily be implemented in aberration-corrected STEM, opens new paths for probing dichroic signals in materials with unprecedented spatial resolution. This research was supported by DOE SUFD MSED, by UT-Battelle, LLC, under Contract No. DE-AC05-00OR22725 with the US DOE, and by the Swedish Research Council and Swedish National Infrastructure for Computing (NSC center)

  15. Correction.

    PubMed

    2016-02-01

    Neogi T, Jansen TLTA, Dalbeth N, et al. 2015 Gout classification criteria: an American College of Rheumatology/European League Against Rheumatism collaborative initiative. Ann Rheum Dis 2015;74:1789–98. The name of the 20th author was misspelled. The correct spelling is Janitzia Vazquez-Mellado. We regret the error. PMID:26881284

  16. Correction.

    PubMed

    2016-02-01

    In the article by Guessous et al (Guessous I, Pruijm M, Ponte B, Ackermann D, Ehret G, Ansermot N, Vuistiner P, Staessen J, Gu Y, Paccaud F, Mohaupt M, Vogt B, Pechère-Bertschi A, Martin PY, Burnier M, Eap CB, Bochud M. Associations of ambulatory blood pressure with urinary caffeine and caffeine metabolite excretions. Hypertension. 2015;65:691–696. doi: 10.1161/HYPERTENSIONAHA.114.04512), which published online ahead of print December 8, 2014, and appeared in the March 2015 issue of the journal, a correction was needed.One of the author surnames was misspelled. Antoinette Pechère-Berstchi has been corrected to read Antoinette Pechère-Bertschi.The authors apologize for this error. PMID:26763012

  17. Correction.

    PubMed

    2015-05-22

    The Circulation Research article by Keith and Bolli (“String Theory” of c-kitpos Cardiac Cells: A New Paradigm Regarding the Nature of These Cells That May Reconcile Apparently Discrepant Results. Circ Res. 2015:116:1216-1230. doi: 10.1161/CIRCRESAHA.116.305557) states that van Berlo et al (2014) observed that large numbers of fibroblasts and adventitial cells, some smooth muscle and endothelial cells, and rare cardiomyocytes originated from c-kit positive progenitors. However, van Berlo et al reported that only occasional fibroblasts and adventitial cells derived from c-kit positive progenitors in their studies. Accordingly, the review has been corrected to indicate that van Berlo et al (2014) observed that large numbers of endothelial cells, with some smooth muscle cells and fibroblasts, and more rarely cardiomyocytes, originated from c-kit positive progenitors in their murine model. The authors apologize for this error, and the error has been noted and corrected in the online version of the article, which is available at http://circres.ahajournals.org/content/116/7/1216.full ( PMID:25999426

  18. Correction

    NASA Astrophysics Data System (ADS)

    1998-12-01

    Alleged mosasaur bite marks on Late Cretaceous ammonites are limpet (patellogastropod) home scars Geology, v. 26, p. 947 950 (October 1998) This article had the following printing errors: p. 947, Abstract, line 11, “sepia” should be “septa” p. 947, 1st paragraph under Introduction, line 2, “creep” should be “deep” p. 948, column 1, 2nd paragraph, line 7, “creep” should be “deep” p. 949, column 1, 1st paragraph, line 1, “creep” should be “deep” p. 949, column 1, 1st paragraph, line 5, “19774” should be “1977)” p. 949, column 1, 4th paragraph, line 7, “in particular” should be “In particular” CORRECTION Mammalian community response to the latest Paleocene thermal maximum: An isotaphonomic study in the northern Bighorn Basin, Wyoming Geology, v. 26, p. 1011 1014 (November 1998) An error appeared in the References Cited. The correct reference appears below: Fricke, H. C., Clyde, W. C., O'Neil, J. R., and Gingerich, P. D., 1998, Evidence for rapid climate change in North America during the latest Paleocene thermal maximum: Oxygen isotope compositions of biogenic phosphate from the Bighorn Basin (Wyoming): Earth and Planetary Science Letters, v. 160, p. 193 208.

  19. 46 CFR 531.8 - Amendment, correction, cancellation, and electronic transmission errors.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ..., cancellation, and electronic transmission errors. (a) Amendment. (1) NSAs may be amended by mutual agreement of... § 531.5 and Appendix A to this part. (i) Where feasible, NSAs should be amended by amending only the affected specific term(s) or subterms. (ii) Each time any part of an NSA is amended, the filer shall...

  20. 46 CFR 531.8 - Amendment, correction, cancellation, and electronic transmission errors.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ..., cancellation, and electronic transmission errors. (a) Amendment. (1) NSAs may be amended by mutual agreement of... § 531.5 and Appendix A to this part. (i) Where feasible, NSAs should be amended by amending only the affected specific term(s) or subterms. (ii) Each time any part of an NSA is amended, the filer shall...

  1. Correcting nonlinear drift distortion of scanning probe and scanning transmission electron microscopies from image pairs with orthogonal scan directions.

    PubMed

    Ophus, Colin; Ciston, Jim; Nelson, Chris T

    2016-03-01

    Unwanted motion of the probe with respect to the sample is a ubiquitous problem in scanning probe and scanning transmission electron microscopies, causing both linear and nonlinear artifacts in experimental images. We have designed a procedure to correct these artifacts by using orthogonal scan pairs to align each measurement line-by-line along the slow scan direction, by fitting contrast variation along the lines. We demonstrate the accuracy of our algorithm on both synthetic and experimental data and provide an implementation of our method. PMID:26716724

  2. Rooting Out Aberrant Behavior in Training.

    ERIC Educational Resources Information Center

    Kokalis, Jerry, Jr.; Paquin, Dave

    1989-01-01

    Discusses aberrant, or disruptive, behavior in an industrial/business, classroom-based, instructor-led training setting. Three examples of aberrant behavior are described, typical case studies are provided for each, and preventive (long-term) and corrective (on-the-spot) strategies for dealing with the problems are discussed. (LRW)

  3. Impurity temperature correction factors for the transmission grating spectrometer in the TJ-II stellarator

    SciTech Connect

    Arevalo, J.; McCarthy, K. J.; Carmona, J. M.; Fontdecaba, J. M.

    2010-10-15

    Impurity ion temperature and velocity profiles are obtained across plasmas in the TJ-II stellarator by performing charge-exchange recombination spectroscopy with a diagnostic neutral beam injector. For this, a tridirectional (toroidal plus two poloidal opposing views) multichannel spectroscopic diagnostic, incorporating 12-way fiber arrays, a compact f/1.8 spectrograph, and a back-illuminated CCD, permits Doppler line shifts and widths (of the C VI line at 529.05 nm) to be determined with 1-2 cm spatial resolution. For good photon counting statistics under Li-coated wall conditions, 600 {mu}m diameter fibers collect and transmit light to curved 100 {mu}m wide input slits. When calibrated with a neon pencil lamp this entrance slit width results in a non-Gaussian instrumental function that, if not handled correctly, can result in systematically underestimated impurity temperatures. Here we develop and present correction factors for this effect for a range of conditions.

  4. Evaluation of the transmission line model for couplant layer corrections in pulse-echo measurements.

    PubMed

    Sturtevant, Blake; Pantea, Cristian; Sinha, Dipen

    2013-05-01

    An acoustic couplant layer plays an integral role in many ultrasonic nondestructive testing and material characterization applications. It is important to account for this layer for accurate time-delay measurements. In pulse-echo measurements, the couplant layer can be accounted for by modeling the frequency dependence of phase delay. In this paper, two such models are evaluated for robustness in determining an accurate phase velocity: a simple linear relationship and the acoustic transmission line with its associated nonlinear expression. For this evaluation, measurements of acoustic phase delay in an aluminum sample were made by the pulse-echo method using tone bursts of 1800 different carrier frequencies between 35 and 125 MHz. The transmission line model was fit to the measured data using an unconstrained nonlinear least squares fitting routine with two free parameters: the acoustic phase velocity in the sample and the couplant thickness. It was found that this nonlinear model was extremely sensitive to the initial parameter guesses and could not unambiguously determine both the couplant layer thickness and acoustic phase velocity. In contrast, the faster and simpler linear least squares fit to the delay data determines a unique phase velocity in agreement with resonant ultrasound spectroscopy, an independent measurement technique. PMID:23661128

  5. Atomically resolved structure of ligand-protected Au9 clusters on TiO2 nanosheets using aberration-corrected STEM

    NASA Astrophysics Data System (ADS)

    Al Qahtani, Hassan S.; Kimoto, Koji; Bennett, Trystan; Alvino, Jason F.; Andersson, Gunther G.; Metha, Gregory F.; Golovko, Vladimir B.; Sasaki, Takayoshi; Nakayama, Tomonobu

    2016-03-01

    Triphenylphosphine ligand-protected Au9 clusters deposited onto titania nanosheets show three different atomic configurations as observed by scanning transmission electron microscopy. The configurations observed are a 3-dimensional structure, corresponding to the previously proposed Au9 core of the clusters, and two pseudo-2-dimensional (pseudo-2D) structures, newly found by this work. With the help of density functional theory (DFT) calculations, the observed pseudo-2D structures are attributed to the low energy, de-ligated structures formed through interaction with the substrate. The combination of scanning transmission electron microscopy with DFT calculations thus allows identifying whether or not the deposited Au9 clusters have been de-ligated in the deposition process.

  6. Characterization and modelling of the spatially- and spectrally-varying point-spread function in hyperspectral imaging systems for computational correction of axial optical aberrations

    NASA Astrophysics Data System (ADS)

    Špiclin, Žiga; Bürmen, Miran; Pernuš, Franjo; Likar, Boštjan

    2012-03-01

    Spatial resolution of hyperspectral imaging systems can vary significantly due to axial optical aberrations that originate from wavelength-induced index-of-refraction variations of the imaging optics. For systems that have a broad spectral range, the spatial resolution will vary significantly both with respect to the acquisition wavelength and with respect to the spatial position within each spectral image. Variations of the spatial resolution can be effectively characterized as part of the calibration procedure by a local image-based estimation of the pointspread function (PSF) of the hyperspectral imaging system. The estimated PSF can then be used in the image deconvolution methods to improve the spatial resolution of the spectral images. We estimated the PSFs from the spectral images of a line grid geometric caliber. From individual line segments of the line grid, the PSF was obtained by a non-parametric estimation procedure that used an orthogonal series representation of the PSF. By using the non-parametric estimation procedure, the PSFs were estimated at different spatial positions and at different wavelengths. The variations of the spatial resolution were characterized by the radius and the fullwidth half-maximum of each PSF and by the modulation transfer function, computed from images of USAF1951 resolution target. The estimation and characterization of the PSFs and the image deconvolution based spatial resolution enhancement were tested on images obtained by a hyperspectral imaging system with an acousto-optic tunable filter in the visible spectral range. The results demonstrate that the spatial resolution of the acquired spectral images can be significantly improved using the estimated PSFs and image deconvolution methods.

  7. Refraction corrected transmission ultrasound computed tomography for application in breast imaging

    PubMed Central

    Li, Shengying; Jackowski, Marcel; Dione, Donald P.; Varslot, Trond; Staib, Lawrence H.; Mueller, Klaus

    2010-01-01

    Purpose: We present an iterative framework for CT reconstruction from transmission ultrasound data which accurately and efficiently models the strong refraction effects that occur in our target application: Imaging the female breast. Methods: Our refractive ray tracing framework has its foundation in the fast marching method (FNMM) and it allows an accurate as well as efficient modeling of curved rays. We also describe a novel regularization scheme that yields further significant reconstruction quality improvements. A final contribution is the development of a realistic anthropomorphic digital breast phantom based on the NIH Visible Female data set. Results: Our system is able to resolve very fine details even in the presence of significant noise, and it reconstructs both sound speed and attenuation data. Excellent correspondence with a traditional, but significantly more computationally expensive wave equation solver is achieved. Conclusions: Apart from the accurate modeling of curved rays, decisive factors have also been our regularization scheme and the high-quality interpolation filter we have used. An added benefit of our framework is that it accelerates well on GPUs where we have shown that clinical 3D reconstruction speeds on the order of minutes are possible. PMID:20527557

  8. An optical tomography PSF almost insensitive to aberrations: the benefit of a spatial incoherent illumination (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Xiao, Peng; Fink, Mathias; Boccara, A. Claude

    2016-03-01

    An aberrated imaging system PSF is broadened; this broadening is responsible of the blurring of the images. A lot of effort has been carried out to correct the effects of aberrations on OCT images for eye examination or biological samples. We have worked on quantifying the effect of geometrical aberrations on Full-Field OCT images and found that there is mostly no loss of resolution but a decrease of the signal level. This is obviously why we use these signals as metric to correct the wavefront distortion. Moreover we found that this absence of blurring, which is due to the fact that we record the dot product of a diffraction limited reference signal and the distorted sample signal, is specific to the use of an incoherent illumination and did not show up with OCT approaches that use spatially coherent sources. More precisely the loss in signal is roughly proportional to the square root of the Strehl ratio: for example, a Strehl ratio of 1/9, which is considered to give a low quality image, would only be 1/3 in Full-Field OCT while keeping the sharpness of the image. Using both an USAF resolution target and a transmissive SLM we have demonstrated this unique feature of sharpness conservation. It was also confirmed by using biological samples. We think that we can thus restrict the aberration corrections in eye examination to the main aberrations (e.g. focus and astigmatism) that will increase the speed of the correction.

  9. HEAVY ION FUSION SCIENCE VIRTUAL NATIONAL LABORATORY 1ST QUARTER 2010 MILESTONE REPORT: Simulations of fast correction of chromatic aberrations to establish physics specifications for implementation on NDCX-1 and NDCX-2

    SciTech Connect

    LIDIA, S.M.; LUND, S.M.; SEIDL, P.A.

    2010-01-04

    This milestone has been accomplished. The Heavy Ion Fusion Science Virtual National Laboratory has completed simulations of a fast correction scheme to compensate for chromatic and time-dependent defocusing effects in the transport of ion beams to the target plane in the NDCX-1 facility. Physics specifications for implementation in NDCX-1 and NDCX-2 have been established. This milestone has been accomplished. The Heavy Ion Fusion Science Virtual National Laboratory has completed simulations of a fast correction scheme to compensate for chromatic and time-dependent defocusing effects in the transport of ion beams to the target plane in the NDCX-1 facility. Physics specifications for implementation in NDCX-1 and NDCX-2 have been established. Focal spot differences at the target plane between the compressed and uncompressed regions of the beam pulse have been modeled and measured on NDCX-1. Time-dependent focusing and energy sweep from the induction bunching module are seen to increase the compressed pulse spot size at the target plane by factors of two or more, with corresponding scaled reduction in the peak intensity and fluence on target. A time-varying beam envelope correction lens has been suggested to remove the time-varying aberration. An Einzel (axisymmetric electric) lens system has been analyzed and optimized for general transport lines, and as a candidate correction element for NDCX-1. Attainable high-voltage holdoff and temporal variations of the lens driving waveform are seen to effect significant changes on the beam envelope angle over the duration of interest, thus confirming the utility of such an element on NDCX-1. Modeling of the beam dynamics in NDCX-1 was performed using a time-dependent (slice) envelope code and with the 3-D, self-consistent, particle-in-cell code WARP. Proof of concept was established with the slice envelope model such that the spread in beam waist positions relative to the target plane can be minimized with a carefully designed

  10. Direct imaging of local atomic ordering in a Pd-Ni-P bulk metallic glass using Cs-corrected transmission electron microscopy.

    PubMed

    Hirata, Akihiko; Hirotsu, Yoshihiko; Nieh, T G; Ohkubo, Tadakatsu; Tanaka, Nobuo

    2007-01-01

    In amorphous alloys, crystalline atomic clusters as small as 1-2 nm are frequently observed as local lattice fringe images by high-resolution electron microscopy (HREM). These clusters can be understood as local structures of amorphous alloys corresponding to "medium-range-order (MRO)". The MRO structure can be observed only under suitable defocusing conditions of the objective lens in HREM. A clear imaging of the MRO structure is difficult in conventional TEMs, mainly due to the delocalization of the image, caused mainly by the spherical aberration of the objective lens and eventually by the chosen defocus. In the present study, we have examined MRO in a Pd-based bulk metallic glass (Pd(40)Ni(40)P(20)) using a high-resolution TEM (acceleration voltage 200 kV) fitted with a spherical aberration constant corrector (Cs corrector) for aberration correction. We found that when Cs was close to zero and defocus values were near the Gaussian focus, MRO regions with an FCC-Pd structure could be clearly observed with a low image disturbance. Under these conditions, the phase-contrast transfer function was understood to act as an ideal filter function, which distinctly selects specific lattice periods of the FCC-Pd clusters. The obtained atomic images of the glass structure including the FCC-Pd clusters are in good agreement with those expected from image simulation according to our amorphous structure model. In this study, we have demonstrated that the Cs-corrected HREM is a powerful tool to directly image locally ordered structures in metallic glasses. PMID:16872747

  11. 3D resolved mapping of optical aberrations in thick tissues

    PubMed Central

    Zeng, Jun; Mahou, Pierre; Schanne-Klein, Marie-Claire; Beaurepaire, Emmanuel; Débarre, Delphine

    2012-01-01

    We demonstrate a simple method for mapping optical aberrations with 3D resolution within thick samples. The method relies on the local measurement of the variation in image quality with externally applied aberrations. We discuss the accuracy of the method as a function of the signal strength and of the aberration amplitude and we derive the achievable resolution for the resulting measurements. We then report on measured 3D aberration maps in human skin biopsies and mouse brain slices. From these data, we analyse the consequences of tissue structure and refractive index distribution on aberrations and imaging depth in normal and cleared tissue samples. The aberration maps allow the estimation of the typical aplanetism region size over which aberrations can be uniformly corrected. This method and data pave the way towards efficient correction strategies for tissue imaging applications. PMID:22876353

  12. "The role of redundant information in cultural transmission and cultural stabilization": Correction to Acerbi and Tennie (2016).

    PubMed

    2016-05-01

    Reports an error in "The role of redundant information in cultural transmission and cultural stabilization" by Alberto Acerbi and Claudio Tennie (Journal of Comparative Psychology, 2016[Feb], Vol 130[1], 62-70). In the article the copyright should have been "© 2016 The Author(s)". The author note also should have included the following license statement "This article has been published under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Copyright for this article is retained by the author(s). Author(s) grant(s) the American Psychological Association the exclusive right to publish the article and identify itself as the original publisher." The online version of this article has been corrected. (The following abstract of the original article appeared in record 2016-07004-005.) Redundant copying has been proposed as a manner to achieve the high-fidelity necessary to pass on and preserve complex traits in human cultural transmission. There are at least 2 ways to define redundant copying. One refers to the possibility of copying repeatedly the same trait over time, and another to the ability to exploit multiple layers of information pointing to the same trait during a single copying event. Using an individual-based model, we explore how redundant copying (defined as in the latter way) helps to achieve successful transmission. The authors show that increasing redundant copying increases the likelihood of accurately transmitting a behavior more than either augmenting the number of copying occasions across time or boosting the general accuracy of social learning. They also investigate how different cost functions, deriving, for example, from the need to invest more energy in cognitive processing, impact the evolution of redundant copying. The authors show that populations converge either

  13. Image-based EUVL aberration metrology

    NASA Astrophysics Data System (ADS)

    Fenger, Germain Louis

    A significant factor in the degradation of nanolithographic image fidelity is optical wavefront aberration. As resolution of nanolithography systems increases, effects of wavefront aberrations on aerial image become more influential. The tolerance of such aberrations is governed by the requirements of features that are being imaged, often requiring lenses that can be corrected with a high degree of accuracy and precision. Resolution of lithographic systems is driven by scaling wavelength down and numerical aperture (NA) up. However, aberrations are also affected from the changes in wavelength and NA. Reduction in wavelength or increase in NA result in greater impact of aberrations, where the latter shows a quadratic dependence. Current demands in semiconductor manufacturing are constantly pushing lithographic systems to operate at the diffraction limit; hence, prompting a need to reduce all degrading effects on image properties to achieve maximum performance. Therefore, the need for highly accurate in-situ aberration measurement and correction is paramount. In this work, an approach has been developed in which several targets including phase wheel, phase disk, phase edges, and binary structures are used to generate optical images to detect and monitor aberrations in extreme ultraviolet (EUV) lithographic systems. The benefit of using printed patterns as opposed to other techniques is that the lithography system is tested under standard operating conditions. Mathematical models in conjunction with iterative lithographic simulations are used to determine pupil phase wavefront errors and describe them as combinations of Zernike polynomials.

  14. Interpreting Chromosome Aberration Spectra

    NASA Technical Reports Server (NTRS)

    Levy, Dan; Reeder, Christopher; Loucas, Bradford; Hlatky, Lynn; Chen, Allen; Cornforth, Michael; Sachs, Rainer

    2007-01-01

    Ionizing radiation can damage cells by breaking both strands of DNA in multiple locations, essentially cutting chromosomes into pieces. The cell has enzymatic mechanisms to repair such breaks; however, these mechanisms are imperfect and, in an exchange process, may produce a large-scale rearrangement of the genome, called a chromosome aberration. Chromosome aberrations are important in killing cells, during carcinogenesis, in characterizing repair/misrepair pathways, in retrospective radiation biodosimetry, and in a number of other ways. DNA staining techniques such as mFISH ( multicolor fluorescent in situ hybridization) provide a means for analyzing aberration spectra by examining observed final patterns. Unfortunately, an mFISH observed final pattern often does not uniquely determine the underlying exchange process. Further, resolution limitations in the painting protocol sometimes lead to apparently incomplete final patterns. We here describe an algorithm for systematically finding exchange processes consistent with any observed final pattern. This algorithm uses aberration multigraphs, a mathematical formalism that links the various aspects of aberration formation. By applying a measure to the space of consistent multigraphs, we will show how to generate model-specific distributions of aberration processes from mFISH experimental data. The approach is implemented by software freely available over the internet. As a sample application, we apply these algorithms to an aberration data set, obtaining a distribution of exchange cycle sizes, which serves to measure aberration complexity. Estimating complexity, in turn, helps indicate how damaging the aberrations are and may facilitate identification of radiation type in retrospective biodosimetry.

  15. Sensing Phase Aberrations behind Lyot Coronagraphs

    NASA Astrophysics Data System (ADS)

    Sivaramakrishnan, Anand; Soummer, Rémi; Pueyo, Laurent; Wallace, J. Kent; Shao, Michael

    2008-11-01

    Direct detection of young extrasolar planets orbiting nearby stars can be accomplished from the ground with extreme adaptive optics and coronagraphy in the near-infrared, as long as this combination can provide an image with a dynamic range of 107 after the data are processed. Slowly varying speckles due to residual phase aberrations that are not measured by the primary wave-front sensor are the primary obstacle to achieving such a dynamic range. In particular, non-common optical path aberrations occurring between the wave-front sensor and the coronagraphic occulting spot degrade performance the most. We analyze the passage of both low and high spatial frequency phase ripples, as well as low-order Zernike aberrations, through an apodized pupil Lyot coronagraph in order to demonstrate the way coronagraphic filtering affects various aberrations. We derive the coronagraphically induced cutoff frequency of the filtering and estimate coronagraphic contrast losses due to low-order Zernike aberrations: tilt, astigmatism, defocus, coma, and spherical aberration. Such slowly varying path errors can be measured behind a coronagraph and corrected by a slowly updated optical path delay precompensation or offset asserted on the wave front by the adaptive optics (AO) system. We suggest ways of measuring and correcting all but the lowest spatial frequency aberrations using Lyot plane wave-front data, in spite of the complex interaction between the coronagraph and those mid-spatial frequency aberrations that cause image plane speckles near the coronagraphic focal plane mask occulter's edge. This investigation provides guidance for next-generation coronagraphic instruments currently under construction.

  16. Comparison of Aberrations After Standard and Customized Refractive Surgery

    NASA Astrophysics Data System (ADS)

    Fang, L.; He, X.; Wang, Y.

    2013-09-01

    To detect possible differences in residual wavefront aberrations between standard and customized laser refractive surgery based onmathematical modeling, the residual optical aberrations after conventional and customized laser refractive surgery were compared accordingto the ablation profile with transition zone. The results indicated that ablation profile has a significant impact on the residual aberrations.The amount of residual aberrations for conventional correction is higher than that for customized correction. Additionally, the residualaberrations for high myopia eyes are markedly larger than those for moderate myopia eyes. For a 5 mm pupil, the main residual aberrationterm is coma and yet it is spherical aberration for a 7 mm pupil. When the pupil diameter is the same as optical zone or greater, themagnitudes of residual aberrations is obviously larger than that for a smaller pupil. In addition, the magnitudes of the residual fifth orsixth order aberrations are relatively large, especially secondary coma in a 6 mm pupil and secondary spherical aberration in a 7 mm pupil.Therefore, the customized ablation profile may be superior to the conventional correction even though the transition zone and treatmentdecentration are taken into account. However, the customized ablation profile will still induce significant amount of residual aberrations.

  17. Correcting Hubble Vision.

    ERIC Educational Resources Information Center

    Shaw, John M.; Sheahen, Thomas P.

    1994-01-01

    Describes the theory behind the workings of the Hubble Space Telescope, the spherical aberration in the primary mirror that caused a reduction in image quality, and the corrective device that compensated for the error. (JRH)

  18. Reactivation of latently infected HIV-1 viral reservoirs and correction of aberrant alternative splicing in the LMNA gene via AMPK activation: Common mechanism of action linking HIV-1 latency and Hutchinson-Gilford progeria syndrome.

    PubMed

    Finley, Jahahreeh

    2015-09-01

    AMPK, a master regulator of cellular metabolism which has been shown to activate PKC-theta (θ) and is essential for T cell activation, may modulate the splicing activities of SRp55 as well as enhance a p32-mediated inhibition of ASF/SF2-induced alternative splicing, potentially correcting aberrant alternative splicing in the LMNA gene and reactivating latent viral HIV-1 reservoirs. Moreover, similar epigenetic modifications and cell cycle regulators also characterize the analogous stages of premature senescence in progeroid cells and latency in HIV-1 infected T cells. AMPK-activating compounds including metformin and resveratrol may thus embody a novel treatment paradigm linking the pathophysiology of HGPS with that of HIV-1 latency. PMID:26115946

  19. Possibilities and limitations of advanced transmission electron microscopy for carbon-based nanomaterials

    PubMed Central

    Bittencourt, Carla; Van Tendeloo, Gustaaf

    2015-01-01

    Summary A major revolution for electron microscopy in the past decade is the introduction of aberration correction, which enables one to increase both the spatial resolution and the energy resolution to the optical limit. Aberration correction has contributed significantly to the imaging at low operating voltages. This is crucial for carbon-based nanomaterials which are sensitive to electron irradiation. The research of carbon nanomaterials and nanohybrids, in particular the fundamental understanding of defects and interfaces, can now be carried out in unprecedented detail by aberration-corrected transmission electron microscopy (AC-TEM). This review discusses new possibilities and limits of AC-TEM at low voltage, including the structural imaging at atomic resolution, in three dimensions and spectroscopic investigation of chemistry and bonding. In situ TEM of carbon-based nanomaterials is discussed and illustrated through recent reports with particular emphasis on the underlying physics of interactions between electrons and carbon atoms. PMID:26425406

  20. Site-isolated Iridium Complexes on MgO Powder: Individual Ir Atoms Imaged by Scanning Transmission Electron Microscopy

    SciTech Connect

    Uzun, A.; Ortalan, V; D. Browning, N; C. Gates , B

    2009-01-01

    Iridium complexes were synthesized on MgO powder by adsorption of Ir(C{sub 2}H{sub 4}){sub 2}(acac) [acac = acetonylacetonate]; images determined by aberration-corrected scanning transmission electron microscopy show individual Ir atoms, demonstrating that the supported complexes were site-isolated.

  1. Quantification of the Information Limit of Transmission Electron Microscopes

    SciTech Connect

    Barthel, J.; Thust, A.

    2008-11-14

    The resolving power of high-resolution transmission electron microscopes is characterized by the information limit, which reflects the size of the smallest object detail observable with a particular instrument. We introduce a highly accurate measurement method for the information limit, which is suitable for modern aberration-corrected electron microscopes. An experimental comparison with the traditionally applied Young's fringe method yields severe discrepancies and confirms theoretical considerations according to which the Young's fringe method does not reveal the information limit.

  2. Aberrations of the cathode objective lens up to fifth order.

    PubMed

    Tromp, R M; Wan, W; Schramm, S M

    2012-08-01

    In this paper we discuss a topic that was close to Prof. Gertrude Rempfer s interests for many years. On this occasion of her 100th birthday, we remember and honor Gertrude for her many outstanding contributions, and for the inspiring example that she set. We derive theoretical expressions for the aberration coefficients of the uniform electrostatic field up to 5th order and compare these with raytracing calculations for the cathode lens used in Low Energy Electron Microscopy and Photo Electron Emission Microscopy experiments. These higher order aberration coefficients are of interest for aberration corrected experiments in which chromatic (C(c)) and spherical (C₃) aberrations of the microscope are set to zero. The theoretical predictions are in good agreement with the results of raytracing. Calculations of image resolution using the Contrast Transfer Function method show that sub-nanometer resolution is achievable in an aberration corrected LEEM system. PMID:22188906

  3. Properties of second-order geometrical aberrations

    NASA Astrophysics Data System (ADS)

    Grammatin, A. P.

    1994-08-01

    This paper analyzes the properties of second-order aberrations that arise in centered optical systems that contain an aspherical surface whose sagittal equation contains a term proportional to the cube of the distance from a surface point to the optical axis. It is shown that the second-order spherical aberration decreases from the center of the field to its edge. No astigmatism appears in wide, oblique beams in the central part of the field. Coma increases linearly from zero at the center of the field to a value equal to the spherical aberration, and then remains constant over the field. A proof is given of the possibility of correcting the image curvature by using an aspherical surface of the type described above.

  4. A method to study electronic transport properties of molecular junction: one-dimension transmission combined with three-dimension correction approximation (OTCTCA)

    PubMed Central

    Liu, Ran; Wang, Chuan-Kui; Li, Zong-Liang

    2016-01-01

    Based on the ab initio calculation, a method of one-dimension transmission combined with three-dimension correction approximation (OTCTCA) is developed to investigate electron-transport properties of molecular junctions. The method considers that the functional molecule provides a spatial distribution of effective potential field for the electronic transport. The electrons are injected from one electrode by bias voltage, then transmit through the potential field around the functional molecule, at last are poured into the other electrode with a specific transmission probability which is calculated from one-dimension Schrödinger equation combined with three-dimension correction. The electron-transport properties of alkane diamines and 4, 4′-bipyridine molecular junctions are studied by applying OTCTCA method. The numerical results show that the conductance obviously exponentially decays with the increase of molecular length. When stretching molecular junctions, steps with a certain width are presented in conductance traces. Especially, in stretching process of 4, 4′-bipyridine molecular junction, if the terminal N atom is broken from flat part of electrode tip and exactly there is a surface Au atom on the tip nearby the N atom, the molecule generally turns to absorb on the surface Au atom, which further results in another lower conductance step in the traces as the experimental probing. PMID:26911451

  5. A method to study electronic transport properties of molecular junction: one-dimension transmission combined with three-dimension correction approximation (OTCTCA).

    PubMed

    Liu, Ran; Wang, Chuan-Kui; Li, Zong-Liang

    2016-01-01

    Based on the ab initio calculation, a method of one-dimension transmission combined with three-dimension correction approximation (OTCTCA) is developed to investigate electron-transport properties of molecular junctions. The method considers that the functional molecule provides a spatial distribution of effective potential field for the electronic transport. The electrons are injected from one electrode by bias voltage, then transmit through the potential field around the functional molecule, at last are poured into the other electrode with a specific transmission probability which is calculated from one-dimension Schrödinger equation combined with three-dimension correction. The electron-transport properties of alkane diamines and 4, 4'-bipyridine molecular junctions are studied by applying OTCTCA method. The numerical results show that the conductance obviously exponentially decays with the increase of molecular length. When stretching molecular junctions, steps with a certain width are presented in conductance traces. Especially, in stretching process of 4, 4'-bipyridine molecular junction, if the terminal N atom is broken from flat part of electrode tip and exactly there is a surface Au atom on the tip nearby the N atom, the molecule generally turns to absorb on the surface Au atom, which further results in another lower conductance step in the traces as the experimental probing. PMID:26911451

  6. A method to study electronic transport properties of molecular junction: one-dimension transmission combined with three-dimension correction approximation (OTCTCA)

    NASA Astrophysics Data System (ADS)

    Liu, Ran; Wang, Chuan-Kui; Li, Zong-Liang

    2016-02-01

    Based on the ab initio calculation, a method of one-dimension transmission combined with three-dimension correction approximation (OTCTCA) is developed to investigate electron-transport properties of molecular junctions. The method considers that the functional molecule provides a spatial distribution of effective potential field for the electronic transport. The electrons are injected from one electrode by bias voltage, then transmit through the potential field around the functional molecule, at last are poured into the other electrode with a specific transmission probability which is calculated from one-dimension Schrödinger equation combined with three-dimension correction. The electron-transport properties of alkane diamines and 4, 4‧-bipyridine molecular junctions are studied by applying OTCTCA method. The numerical results show that the conductance obviously exponentially decays with the increase of molecular length. When stretching molecular junctions, steps with a certain width are presented in conductance traces. Especially, in stretching process of 4, 4‧-bipyridine molecular junction, if the terminal N atom is broken from flat part of electrode tip and exactly there is a surface Au atom on the tip nearby the N atom, the molecule generally turns to absorb on the surface Au atom, which further results in another lower conductance step in the traces as the experimental probing.

  7. Tuberculosis outbreak in a housing unit for human immunodeficiency virus-infected patients in a correctional facility: transmission risk factors and effective outbreak control.

    PubMed

    Mohle-Boetani, Janet C; Miguelino, Vanessa; Dewsnup, Daniel H; Desmond, Edward; Horowitz, Evalyn; Waterman, Stephen H; Bick, Joseph

    2002-03-01

    In 1995, an outbreak of tuberculosis (TB) occurred among residents of a correctional-facility housing unit for inmates infected with human immunodeficiency virus (HIV). We isolated and treated patients who were suspected to have TB. To determine risk factors for in-prison transmission of TB, we conducted a case-control study to compare inmate case patients infected with a distinct outbreak strain of TB with control subjects who resided in the HIV unit. We identified 15 case patients during a 4-month period. Among inmates with a CD4 count of <100 cells/mm(3), case patients were more likely than control subjects to spend >/=20 hours per week in a communal day room (odds ratio, 42; P=.002) and were less likely to have a television in their single-person room (odds ratio, 0.10; P=.003). The communal day room was a likely site of transmission. Successful collaboration between the correctional system and public health departments halted the outbreak. PMID:11803502

  8. Effect of optical aberrations on image quality and visual performance

    NASA Astrophysics Data System (ADS)

    Ravikumar, Sowmya

    In addition to the effects of diffraction, retinal image quality in the human eye is degraded by optical aberrations. Although the paraxial geometric optics description of defocus consists of a simple blurred circle whose size determines the extent of blur, in reality the interactions between monochromatic and chromatic aberrations create a complex pattern of retinal image degradation. My thesis work hypothesizes that although both monochromatic and chromatic optical aberrations in general reduce image quality from best achievable, the underlying causes of retinal image quality degradation are characteristic of the nature of the aberration, its interactions with other aberrations as well as the composition of the stimulus. To establish a controlled methodology, a computational model of the retinal image with various levels of aberrations was used to create filters equivalent to those produced by real optical aberrations. Visual performance was measured psychophysically by using these special filters that separately modulated amplitude and phase in the retinal image. In order to include chromatic aberration into the optical interactions, a computational polychromatic model of the eye was created and validated. The model starts with monochromatic wavefront maps and derives a composite white light point-spread function whose quality was assessed using metrics of image quality. Finally, in order to assess the effectiveness of simultaneous multifocal intra-ocular lenses in correcting the eye's optical aberrations, a polychromatic computational model of a pseudophakic eye was constructed. This model incorporated the special chromatic properties unique to an eye corrected with hybrid refractive-diffractive optical elements. Results showed that normal optical aberrations reduced visual performance not only by reducing image contrast but also by altering the phase structure of the image. Longitudinal chromatic aberration had a greater effect on image quality in isolation

  9. Electrostatic mirror objective with eliminated spherical and axial chromatic aberrations.

    PubMed

    Bimurzaev, Seitkerim B; Serikbaeva, Gulnur S; Yakushev, Evgeniy M

    2003-01-01

    Computational formulae for the coefficients of the third-order spherical aberration and the second-order axial chromatic aberration are presented for an axially symmetric electrostatic electron mirror. A technique for eliminating the high-order derivatives of the potential axial distribution in mirror systems from the integrands is described. Conditions for elimination of spherical and axial chromatic aberrations, either separately or simultaneously, are found for a three-electrode axially symmetric mirror composed of coaxial cylinders of the same diameter. A principal scheme of the transmission electron microscope, where an electrostatic electron mirror serves as its objective, is presented. PMID:14599097

  10. Anisoplanatism in adaptive optics systems due to pupil aberrations

    SciTech Connect

    Bauman, B

    2005-08-01

    Adaptive optics systems typically include an optical relay that simultaneously images the science field to be corrected and also a set of pupil planes conjugate to the deformable mirror of the system. Often, in the optical spaces where DM's are placed, the pupils are aberrated, leading to a displacement and/or distortion of the pupil that varies according to field position--producing a type of anisoplanatism, i.e., a degradation of the AO correction with field angle. The pupil aberration phenomenon is described and expressed in terms of Seidel aberrations. An expression for anisoplanatism as a function of pupil distortion is derived, an example of an off-axis parabola is given, and a convenient method for controlling pupil-aberration-generated anisoplanatism is proposed.

  11. Direct visualization method of the atomic structure of light and heavy atoms with double-detector C{sub s}-corrected scanning transmission electron microscopy

    SciTech Connect

    Kotaka, Yasutoshi

    2012-09-24

    The advent of C{sub s}-corrected scanning transmission electron microscopy (STEM) has advanced the observation of atomic structures in materials and nanotechnology devices. High-angle annular dark-field (HAADF)-STEM using an annular detector visualizes heavy elements as bright spots at atomic resolution that can be observed with the Z-contrast technique. In this study, the atomic column of light elements is directly observed as bright spots by middle-angle bright-field (MABF)-STEM imaging. Therefore, a double-detector STEM imaging method was developed, exploiting the advantage of both MABF-STEM and HAADF-STEM to maximum, which consists of multiple exposures of simultaneously observed MABF- and HAADF-STEM images in red-green-blue color.

  12. Multiplexed aberration measurement for deep tissue imaging in vivo

    PubMed Central

    Wang, Chen; Liu, Rui; Milkie, Daniel E.; Sun, Wenzhi; Tan, Zhongchao; Kerlin, Aaron; Chen, Tsai-Wen; Kim, Douglas S.; Ji, Na

    2014-01-01

    We describe a multiplexed aberration measurement method that modulates the intensity or phase of light rays at multiple pupil segments in parallel to determine their phase gradients. Applicable to fluorescent-protein-labeled structures of arbitrary complexity, it allows us to obtain diffraction-limited resolution in various samples in vivo. For the strongly scattering mouse brain, a single aberration correction improves structural and functional imaging of fine neuronal processes over a large imaging volume. PMID:25128976

  13. Cosmological parameter estimation: impact of CMB aberration

    SciTech Connect

    Catena, Riccardo; Notari, Alessio E-mail: notari@ffn.ub.es

    2013-04-01

    The peculiar motion of an observer with respect to the CMB rest frame induces an apparent deflection of the observed CMB photons, i.e. aberration, and a shift in their frequency, i.e. Doppler effect. Both effects distort the temperature multipoles a{sub lm}'s via a mixing matrix at any l. The common lore when performing a CMB based cosmological parameter estimation is to consider that Doppler affects only the l = 1 multipole, and neglect any other corrections. In this paper we reconsider the validity of this assumption, showing that it is actually not robust when sky cuts are included to model CMB foreground contaminations. Assuming a simple fiducial cosmological model with five parameters, we simulated CMB temperature maps of the sky in a WMAP-like and in a Planck-like experiment and added aberration and Doppler effects to the maps. We then analyzed with a MCMC in a Bayesian framework the maps with and without aberration and Doppler effects in order to assess the ability of reconstructing the parameters of the fiducial model. We find that, depending on the specific realization of the simulated data, the parameters can be biased up to one standard deviation for WMAP and almost two standard deviations for Planck. Therefore we conclude that in general it is not a solid assumption to neglect aberration in a CMB based cosmological parameter estimation.

  14. Cosmological parameter estimation: impact of CMB aberration

    NASA Astrophysics Data System (ADS)

    Catena, Riccardo; Notari, Alessio

    2013-04-01

    The peculiar motion of an observer with respect to the CMB rest frame induces an apparent deflection of the observed CMB photons, i.e. aberration, and a shift in their frequency, i.e. Doppler effect. Both effects distort the temperature multipoles alm's via a mixing matrix at any l. The common lore when performing a CMB based cosmological parameter estimation is to consider that Doppler affects only the l = 1 multipole, and neglect any other corrections. In this paper we reconsider the validity of this assumption, showing that it is actually not robust when sky cuts are included to model CMB foreground contaminations. Assuming a simple fiducial cosmological model with five parameters, we simulated CMB temperature maps of the sky in a WMAP-like and in a Planck-like experiment and added aberration and Doppler effects to the maps. We then analyzed with a MCMC in a Bayesian framework the maps with and without aberration and Doppler effects in order to assess the ability of reconstructing the parameters of the fiducial model. We find that, depending on the specific realization of the simulated data, the parameters can be biased up to one standard deviation for WMAP and almost two standard deviations for Planck. Therefore we conclude that in general it is not a solid assumption to neglect aberration in a CMB based cosmological parameter estimation.

  15. Quantitative Analysis of the Head Scatter and Jaw Transmission Correction Factor for Commissioning of Enhanced Dynamic Wedge Fields Using a MapCHECK 2 Diode Array

    NASA Astrophysics Data System (ADS)

    Dickerson, Edward C.

    Quality assurance in radiation oncology treatment planning requires independent verification of dose to be delivered to a patient through "second check" calculations for simple plans as well as planar dose fluence measurements for more complex treatments, such as intensity modulated radiation treatments (IMRT). Discrepancies between treatment planning system (TPS) and second check calculations created a need for treatment plan verification using a two dimensional diode array for Enhanced Dynamic Wedge (EDW) fields. While these measurements met clinical standards for treatment, they revealed room for improvement in the EDW model. The purpose of this study is to analyze the head scatter and jaw transmission effects of the moving jaw in EDW fields by measuring dose profiles with a two dimensional diode array in order to minimize differences between the manufacturer provided fluence table (Golden Segmented Treatment Table) and actual machine output. The jaw transmission effect reduces the dose gradient in the wedge direction due to transmission photons adding dose to the heel region of the field. The head scatter effect also reduces the gradient in the dose profile due to decreased accelerator output at increasingly smaller field sizes caused by the moving jaw. The field size continuously decreases with jaw motion, and thus the toe region of the wedge receives less dose than anticipated due to less head scatter contribution for small field sizes. The Golden Segmented Treatment Table (GSTT) does not take these factors into account since they are specific to each individual machine. Thus, these factors need to be accounted for in the TPS to accurately model the gradient of the wedge. The TPS used in this clinic uses one correction factor (transmission factor) to account for both effects since both factors reduce the dose gradient of the wedge. Dose profile measurements were made for 5x5 cm2, 10x10 cm2, and 20x20 cm2 field sizes with open fields and 10°, 15°, 20°, 25

  16. Influences of reference plane and direction of measurement on eye aberration measurement

    NASA Astrophysics Data System (ADS)

    Atchison, David A.; Charman, W. Neil

    2005-12-01

    We explored effects of measurement conditions on wave aberration estimates for uncorrected, axially myopic model eyes. Wave aberrations were initially referenced to either the anterior corneal pole or the natural entrance pupil of symmetrical eye models, with rays traced into the eye from infinity (into the eye) to simulate normal vision, into the eye from infinity and then back out of the eye from the retinal intercepts (into/out of the eye), or out of the eye from the retinal fovea (out of the eye). The into-the-eye and out-of-the-eye ray traces gave increases in spherical aberration as myopia increased, but the into/out-of-the-eye ray trace showed little variation in spherical aberration. Reference plane choice also affected spherical aberration. Corresponding residual aberrations were calculated after the models had been optically corrected, either by placing the object or image plane at the paraxial far point or by modifying corneas to simulate laser ablation corrections. Correcting aberrations by ablation was more complete if the original aberrations were referenced to the cornea rather than to the entrance pupil. For eyes corrected by spectacle lenses, failure to allow for effects of pupil magnification on apparent entrance pupil diameter produced larger changes in measured aberrations. The general findings regarding choice of reference plane and direction of measurement were found to be equally applicable to eyes that lacked rotational symmetry.

  17. Bone sonometry: reducing phase aberration to improve estimates of broadband ultrasonic attenuation.

    PubMed

    Bauer, Adam Q; Anderson, Christian C; Holland, Mark R; Miller, James G

    2009-01-01

    Previous studies suggest that phase cancellation at the receiving transducer can result in the overestimation of the frequency dependent ultrasonic attenuation of bone, a quantity that has been shown to correlate with bone mineral density and ultimately with osteoporotic fracture risk. Evidence supporting this interpretation is provided by phase insensitive processing of the data, which appear to reduce the apparent overestimates of attenuation. The present study was designed to clarify the components underlying phase aberration artifacts in such through-transmission measurements by conducting systematic studies of the simplest possible test objects capable of introducing phase aberration. Experimental results are presented for a Lexan phantom over the frequency range 300-700 kHz and a Plexiglas phantom over the 3-7 MHz range. Both phantoms were flat and parallel plates featuring a step discontinuity milled into one of their initially flat sides. The through-transmitted signals were received by a 0.6 mm diameter membrane hydrophone that was raster scanned over a grid coaxial with the transmitting transducer. Signals received by the pseudoarray were processed offline to emulate phase sensitive and phase insensitive receivers with different aperture diameters. The data processed phase sensitively were focused to demonstrate the results of planar, geometrical, and correlation-based aberration correction methods. Results are presented illustrating the relative roles of interference in the ultrasonic field and phase cancellation at the receiving transducer in producing phase aberration artifacts. It was found that artifacts due to phase cancellation or interference can only be minimized with phase insensitive summation techniques by choosing an appropriately large receiving aperture. Data also suggest the potentially confounding role of time-and frequency-domain artifacts on ultrasonic measurements and illustrate the advantages of two-dimensional receiving arrays in

  18. Erratum: cosmological parameter estimation: impact of CMB aberration Erratum: cosmological parameter estimation: impact of CMB aberration

    NASA Astrophysics Data System (ADS)

    Catena, Riccardo; Notari, Alessio

    2013-07-01

    The peculiar motion of an observer with respect to the CMB rest frame induces an apparent deflection of the observed CMB photons, i.e. aberration, and a shift in their frequency, i.e. Doppler effect. Both effects distort the temperature multipoles alm's via a mixing matrix at any l. The common lore when performing a CMB based cosmological parameter estimation is to consider that Doppler affects only the l = 1 multipole, and neglect any other corrections. In ref. [1] we checked the validity of this assumption in parameter estimation for a Planck-like angular resolution, both for a full-sky ideal experiment and also when sky cuts are included to model CMB foreground contaminations with a sky fraction similar to the Planck satellite. The result to this analysis was that aberration and Doppler have a sizable impact on a CMB based parameter estimation. In this erratum we correct an error made in ref. [1] when comparing pseudo angular power spectra computed in the CMB rest frame with the ones measured by a moving observer. Properly comparing the two spectra we find now that although the corrections to the Cl due to aberration and Doppler are larger than the cosmic variance at l > 1000 and potentially important, the resulting bias on the parameters is negligible for Planck.

  19. The impact of aberrations on object reconstruction with interferometric synthetic aperture microscopy

    NASA Astrophysics Data System (ADS)

    Adie, Steven G.; Graf, Benedikt W.; Ahmad, Adeel; Darbarsyah, Budiman; Boppart, Stephen A.; Carney, P. Scott

    2011-03-01

    Interferometric synthetic aperture microscopy (ISAM) reconstructs the scattering potential of a sample with spatially invariant resolution, based on the incident beam profile, the beam scan pattern, the physical model of light sample interaction, and subsequent light collection by the system. In practice, aberrations may influence the beam profile, particularly at higher NA, when ISAM is expected to provide maximum benefit over optical coherence microscopy. Thus it is of interest to determine the effects of aberrations on ISAM reconstructions. In this paper we present the forward model incorporating the effects of aberrations, which forms the basis for aberration correction in ISAM. Simulations and experimental results show that when operating far from focus, modest amounts of spherical aberration can introduce artifacts to the point-spread function, even at relatively low NA ~ 0.1-0.2. Further work will investigate computational methods to correct the effects of aberrations, i.e. to perform virtual adaptive optics.

  20. Hexapod kinematics for secondary mirror aberration control .

    NASA Astrophysics Data System (ADS)

    Schipani, P.

    This work deals with active correction of the aberrations in a telescope by moving the secondary mirror. A special attention is dedicated to the case of a secondary mirror whose motions are controlled by a 6-6 Stewart Platform (generally called by astronomers simply "hexapod", even if this term is more general). The kinematics of the device is studied. The non trivial forward kinematics problem is solved by an iterative algorithm fitting the necessities of an active optics system and fast enough to be used in a closed loop feedback control.

  1. Solutions with precise prediction for thermal aberration error in low-k1 immersion lithography

    NASA Astrophysics Data System (ADS)

    Fukuhara, Kazuya; Mimotogi, Akiko; Kono, Takuya; Aoyama, Hajime; Ogata, Taro; Kita, Naonori; Matsuyama, Tomoyuki

    2013-04-01

    Thermal aberration becomes a serious problem in the production of semiconductors for which low-k1 immersion lithography with a strong off-axis illumination, such as dipole setting, is used. The illumination setting localizes energy of the light in the projection lens, bringing about localized temperature rise. The temperature change varies lens refractive index and thus generates aberrations. The phenomenon is called thermal aberration. For realizing manufacturability of fine patterns with high productivity, thermal aberration control is important. Since heating areas in the projection lens are determined by source shape and distribution of diffracted light by a mask, the diffracted pupilgram convolving illumination source shape with diffraction distribution can be calculated using mask layout data for the thermal aberration prediction. Thermal aberration is calculated as a function of accumulated irradiation power. We have evaluated the thermal aberration computational prediction and control technology "Thermal Aberration Optimizer" (ThAO) on a Nikon immersion system. The thermal aberration prediction consists of two steps. The first step is prediction of the diffraction map on the projection pupil. The second step is computing thermal aberration from the diffraction map using a lens thermal model and an aberration correction function. We performed a verification test for ThAO using a mask of 1x-nm memory and strong off-axis illumination. We clarified the current performance of thermal aberration prediction, and also confirmed that the impacts of thermal aberration of NSR-S621D on CD and overlay for our 1x-nm memory pattern are very small. Accurate thermal aberration prediction with ThAO will enable thermal aberration risk-free lithography for semiconductor chip production.

  2. Deciphering the physics and chemistry of perovskites with transmission electron microscopy.

    PubMed

    Polking, Mark J

    2016-03-17

    Perovskite oxides exhibit rich structural complexity and a broad range of functional properties, including ferroelectricity, ferromagnetism, and superconductivity. The development of aberration correction for the transmission electron microscope and concurrent progress in electron spectroscopy, electron holography, and other techniques has fueled rapid progress in the understanding of the physics and chemistry of these materials. New techniques based on the transmission electron microscope are first surveyed, and the applications of these techniques for the study of the structure, chemistry, electrostatics, and dynamics of perovskite oxides are then explored in detail, with a particular focus on ferroelectric materials. PMID:26762871

  3. Chromosome Aberrations in Astronauts

    NASA Technical Reports Server (NTRS)

    George, Kerry A.; Durante, M.; Cucinotta, Francis A.

    2007-01-01

    A review of currently available data on in vivo induced chromosome damage in the blood lymphocytes of astronauts proves that, after protracted exposure of a few months or more to space radiation, cytogenetic biodosimetry analyses of blood collected within a week or two of return from space provides a reliable estimate of equivalent radiation dose and risk. Recent studies indicate that biodosimetry estimates from single spaceflights lie within the range expected from physical dosimetry and biophysical models, but very large uncertainties are associated with single individual measurements and the total sample population remains low. Retrospective doses may be more difficult to estimate because of the fairly rapid time-dependent loss of "stable" aberrations in blood lymphocytes. Also, biodosimetry estimates from individuals who participate in multiple missions, or very long (interplanetary) missions, may be complicated by an adaptive response to space radiation and/or changes in lymphocyte survival and repopulation. A discussion of published data is presented and specific issues related to space radiation biodosimetry protocols are discussed.

  4. Image Ellipticity from Atmospheric Aberrations

    SciTech Connect

    de Vries, W H; Olivier, S S; Asztalos, S J; Rosenberg, L J; Baker, K L

    2007-03-06

    We investigate the ellipticity of the point-spread function (PSF) produced by imaging an unresolved source with a telescope, subject to the effects of atmospheric turbulence. It is important to quantify these effects in order to understand the errors in shape measurements of astronomical objects, such as those used to study weak gravitational lensing of field galaxies. The PSF modeling involves either a Fourier transform of the phase information in the pupil plane or a ray-tracing approach, which has the advantage of requiring fewer computations than the Fourier transform. Using a standard method, involving the Gaussian weighted second moments of intensity, we then calculate the ellipticity of the PSF patterns. We find significant ellipticity for the instantaneous patterns (up to more than 10%). Longer exposures, which we approximate by combining multiple (N) images from uncorrelated atmospheric realizations, yield progressively lower ellipticity (as 1/{radical}N). We also verify that the measured ellipticity does not depend on the sampling interval in the pupil plane using the Fourier method. However, we find that the results using the ray-tracing technique do depend on the pupil sampling interval, representing a gradual breakdown of the geometric approximation at high spatial frequencies. Therefore, ray tracing is generally not an accurate method of modeling PSF ellipticity induced by atmospheric turbulence unless some additional procedure is implemented to correctly account for the effects of high spatial frequency aberrations. The Fourier method, however, can be used directly to accurately model PSF ellipticity, which can give insights into errors in the statistics of field galaxy shapes used in studies of weak gravitational lensing.

  5. Diffractively corrected counter-rotating Risley prisms.

    PubMed

    Nie, Xin; Yang, Hongfang; Xue, Changxi

    2015-12-10

    Using the vector refraction equation and the vector diffraction equation, we obtain the expressions of the direction cosines of the refractive rays for the two wedge prisms, and the direction cosines of the diffractive rays for two wedge grisms, in which diffractive gratings were etched into the prism faces to correct the chromatic aberrations. A mathematical model between the two vector equations is proposed to compare the difference angle chromatic aberrations when the Risley prisms/grisms are rotating at different angles. We conclude that the use of diffractively corrected prisms offers a new method to correct chromatic aberrations in Risley prisms. PMID:26836873

  6. Coating-induced wavefront aberrations

    NASA Astrophysics Data System (ADS)

    Reiley, Daniel J.; Chipman, Russell A.

    1992-12-01

    The coatings which are used on telescope mirrors and other optical interfaces can have a profound effect on the image quality formed by an optical system. This paper evaluates the defocus and astigmatism which are caused by the s- and p-phase shifts of coatings. These coating-induced wavefront aberrations are usually insignificant, but can, under certain circumstances, overshadow the geometric wavefront aberrations of the system. The wavefront aberrations induced by reflection-enhanced coatings on an f/1.5 Cassegrain telescope are numerically evaluated as an example.

  7. DNA Repair Defects and Chromosomal Aberrations

    NASA Technical Reports Server (NTRS)

    Hada, Megumi; George, K. A.; Huff, J. L.; Pluth, J. M.; Cucinotta, F. A.

    2009-01-01

    Yields of chromosome aberrations were assessed in cells deficient in DNA doublestrand break (DSB) repair, after exposure to acute or to low-dose-rate (0.018 Gy/hr) gamma rays or acute high LET iron nuclei. We studied several cell lines including fibroblasts deficient in ATM (ataxia telangiectasia mutated; product of the gene that is mutated in ataxia telangiectasia patients) or NBS (nibrin; product of the gene mutated in the Nijmegen breakage syndrome), and gliomablastoma cells that are proficient or lacking in DNA-dependent protein kinase (DNA-PK) activity. Chromosomes were analyzed using the fluorescence in situ hybridization (FISH) chromosome painting method in cells at the first division post irradiation, and chromosome aberrations were identified as either simple exchanges (translocations and dicentrics) or complex exchanges (involving >2 breaks in 2 or more chromosomes). Gamma irradiation induced greater yields of both simple and complex exchanges in the DSB repair-defective cells than in the normal cells. The quadratic dose-response terms for both simple and complex chromosome exchanges were significantly higher for the ATM- and NBS-deficient lines than for normal fibroblasts. However, in the NBS cells the linear dose-response term was significantly higher only for simple exchanges. The large increases in the quadratic dose-response terms in these repair-defective cell lines points the importance of the functions of ATM and NBS in chromatin modifications to facilitate correct DSB repair and minimize the formation of aberrations. The differences found between ATM- and NBS-deficient cells at low doses suggest that important questions should with regard to applying observations of radiation sensitivity at high dose to low-dose exposures. For aberrations induced by iron nuclei, regression models preferred purely linear dose responses for simple exchanges and quadratic dose responses for complex exchanges. Relative biological effectiveness (RBE) factors of all of

  8. Active Optical Control of Quasi-Static Aberrations for ATST

    NASA Astrophysics Data System (ADS)

    Johnson, L. C.; Upton, R.; Rimmele, T. R.; Hubbard, R.; Barden, S. C.

    2012-12-01

    The Advanced Technology Solar Telescope (ATST) requires active control of quasi-static telescope aberrations in order to achieve the image quality set by its science requirements. Four active mirrors will be used to compensate for optical misalignments induced by changing gravitational forces and thermal gradients. These misalignments manifest themselves primarily as low-order wavefront aberrations that will be measured by a Shack-Hartmann wavefront sensor. When operating in closed-loop with the wavefront sensor, the active optics control algorithm uses a linear least-squares reconstructor incorporating force constraints to limit force applied to the primary mirror while also incorporating a neutral-point constraint on the secondary mirror to limit pointing errors. The resulting system compensates for astigmatism and defocus with rigid-body motion of the secondary mirror and higher-order aberrations with primary mirror bending modes. We demonstrate this reconstruction method and present simulation results that apply the active optics correction to aberrations generated by finite-element modeling of thermal and gravitational effects over a typical day of ATST operation. Quasi-static wavefront errors are corrected to within limits set by wavefront sensor noise in all cases with very little force applied to the primary mirror surface and minimal pointing correction needed.

  9. Iron redistribution in a zirconium alloy after neutron and proton irradiation studied by energy-dispersive X-ray spectroscopy (EDX) using an aberration-corrected (scanning) transmission electron microscope

    NASA Astrophysics Data System (ADS)

    Francis, E. M.; Harte, A.; Frankel, P.; Haigh, S. J.; Jädernäs, D.; Romero, J.; Hallstadius, L.; Preuss, M.

    2014-11-01

    Zirconium alloys used as cladding materials in nuclear reactors can exhibit accelerated irradiation induced growth, often termed linear growth, after sustained neutron irradiation. This phenomenon has been linked to the formation of -component dislocation loops and to the concentration of interstitial solute atoms. It is well documented for the Zircaloys that Fe dissolves from second phase particles (SPPs) during irradiation thus increasing the interstitial solute concentration in the matrix. However, no progress has yet been made into understanding whether a similar process occurs for the newer ZIRLO™ alloys. We aim to overcome this shortcoming here by studying compositional changes in second phase particles in Low Tin ZIRLO™ after neutron and proton irradiation using energy dispersive X-ray (EDX) spectroscopy. Material irradiated to 18 dpa (displacements per atom) using neutrons and to 2.3 and 7 dpa by protons was investigated. The results show that Fe is lost from Zr-Nb-Fe-SPPs during both neutron and proton irradiation. Prior to irradiation, Fe was detected at the interface of β-Nb-SPPs. This Fe enrichment is also dispersed during irradiation. Qualitatively, excellent agreement was found regarding the elemental redistribution processes observed after proton and neutron irradiation.

  10. Impact of astigmatism and high-order aberrations on subjective best focus.

    PubMed

    Marcos, Susana; Velasco-Ocana, Miriam; Dorronsoro, Carlos; Sawides, Lucie; Hernandez, Martha; Marin, Gildas

    2015-08-01

    We studied the role of native astigmatism and ocular aberrations on best-focus setting and its shift upon induction of astigmatism in 42 subjects (emmetropes, myopes, hyperopes, with-the-rule [WTR] and against-the-rule [ATR] myopic astigmats). Stimuli were presented in a custom-developed adaptive optics simulator, allowing correction for native aberrations and astigmatism induction (+1 D; 6-mm pupil). Best-focus search consisted on randomized-step interleaved staircase method. Each subject searched best focus for four different images, and four different conditions (with/without aberration correction, with/without astigmatism induction). The presence of aberrations induced a significant shift in subjective best focus (0.4 D; p < 0.01), significantly correlated (p = 0.005) with the best-focus shift predicted from optical simulations. The induction of astigmatism produced a statistically significant shift of the best-focus setting in all groups under natural aberrations (p = 0.001), and in emmetropes and in WTR astigmats under corrected aberrations (p < 0.0001). Best-focus shift upon induced astigmatism was significantly different across groups, both for natural aberrations and AO-correction (p < 0.0001). Best focus shifted in opposite directions in WTR and ATR astigmats upon induction of astigmatism, symmetrically with respect to the best-focus shift in nonastigmatic myopes. The shifts are consistent with a bias towards vertical and horizontal retinal blur in WTR and ATR astigmats, respectively, indicating adaptation to native astigmatism. PMID:26237300

  11. Anisotropic Complementary Acoustic Metamaterial for Canceling out Aberrating Layers

    NASA Astrophysics Data System (ADS)

    Shen, Chen; Xu, Jun; Fang, Nicholas X.; Jing, Yun

    2014-10-01

    In this paper, we investigate a type of anisotropic, acoustic complementary metamaterial (CMM) and its application in restoring acoustic fields distorted by aberrating layers. The proposed quasi two-dimensional (2D), nonresonant CMM consists of unit cells formed by membranes and side branches with open ends. Simultaneously, anisotropic and negative density is achieved by assigning membranes facing each direction (x and y directions) different thicknesses, while the compressibility is tuned by the side branches. Numerical examples demonstrate that the CMM, when placed adjacent to a strongly aberrating layer, could acoustically cancel out that aberrating layer. This leads to dramatically reduced acoustic field distortion and enhanced sound transmission, therefore virtually removing the layer in a noninvasive manner. In the example where a focused beam is studied, using the CMM, the acoustic intensity at the focus is increased from 28% to 88% of the intensity in the control case (in the absence of the aberrating layer and the CMM). The proposed acoustic CMM has a wide realm of potential applications, such as cloaking, all-angle antireflection layers, ultrasound imaging, detection, and treatment through aberrating layers.

  12. Sexual aberration or instinctual vicissitude? Revisiting freud's "the sexual aberrations".

    PubMed

    Phillips, Sidney H

    2014-04-01

    The author reconsiders Freud's "The Sexual Aberrations," the first of his Three Essays on the Theory of Sexuality (1905), in light of contemporary psychoanalytic theory. Are the concepts of sexual aberration and norm still viable? The author argues that they are necessary but insufficient elements in current theory. He then presents a competing model in which sexuality can be reduced to a more elemental level of disturbance and wish, where it is an expression of a nonsexual wish--for example, to possess or control the object to eliminate separateness. The author presents clinical material to demonstrate this alternative model. PMID:24777366

  13. Aberrations in asymmetrical electron lenses.

    PubMed

    Fitzgerald, J P S; Word, R C; Könenkamp, R

    2012-08-01

    Starting from well established knowledge in light-optics we explore the question if electron-optical aberration can be improved in asymmetrical electron lenses. We show that spherical as well as chromatic aberration coefficients are reduced in asymmetric electrostatic einzel lenses when the center electrode is moved away from the center position towards the entrance electrode. Relative improvements up to 40% for both the chromatic and the spherical aberration coefficients can be obtained. We use analytical and numerical calculations to confirm this result for exemplary cases of a lens with fixed length and working distance. The agreement of the two calculation methods is very good. We then derive an estimate for the electron-optical aberration coefficients from light-optics. The derived expressions for chromatic and spherical aberrations are somewhat simpler than the ones derived from electron-optics as they involve integrals only over the electrostatic potential, not over the electron paths. The estimated formulas still agree well with the electron optical calculations. Overall, we are tempted to suggest that the enormous knowledge base of light optics can provide considerable guidance for electron-optical applications. PMID:22206603

  14. Aberration measurement of projection optics in lithographic tools by use of an alternating phase-shifting mask

    NASA Astrophysics Data System (ADS)

    Wang, Fan; Wang, Xiangzhao; Ma, Mingying; Zhang, Dongqing; Shi, Weijie; Hu, Jianming

    2006-01-01

    As a critical dimension shrinks, the degradation in image quality caused by wavefront aberrations of projection optics in lithographic tools becomes a serious problem. It is necessary to establish a technique for a fast and accurate in situ aberration measurement. We introduce what we believe to be a novel technique for characterizing the aberrations of projection optics by using an alternating phase-shifting mask. The even aberrations, such as spherical aberration and astigmatism, and the odd aberrations, such as coma, are extracted from focus shifts and image displacements of the phase-shifted pattern, respectively. The focus shifts and the image displacements are measured by a transmission image sensor. The simulation results show that, compared with the accuracy of the previous straightforward measurement technique, the accuracy of the coma measurement increases by more than 30% and the accuracy of the spherical-aberration measurement increases by approximately 20%.

  15. Eye aberration analysis with Zernike polynomials

    NASA Astrophysics Data System (ADS)

    Molebny, Vasyl V.; Chyzh, Igor H.; Sokurenko, Vyacheslav M.; Pallikaris, Ioannis G.; Naoumidis, Leonidas P.

    1998-06-01

    New horizons for accurate photorefractive sight correction, afforded by novel flying spot technologies, require adequate measurements of photorefractive properties of an eye. Proposed techniques of eye refraction mapping present results of measurements for finite number of points of eye aperture, requiring to approximate these data by 3D surface. A technique of wave front approximation with Zernike polynomials is described, using optimization of the number of polynomial coefficients. Criterion of optimization is the nearest proximity of the resulted continuous surface to the values calculated for given discrete points. Methodology includes statistical evaluation of minimal root mean square deviation (RMSD) of transverse aberrations, in particular, varying consecutively the values of maximal coefficient indices of Zernike polynomials, recalculating the coefficients, and computing the value of RMSD. Optimization is finished at minimal value of RMSD. Formulas are given for computing ametropia, size of the spot of light on retina, caused by spherical aberration, coma, and astigmatism. Results are illustrated by experimental data, that could be of interest for other applications, where detailed evaluation of eye parameters is needed.

  16. How To Measure Gravitational Aberration?

    NASA Astrophysics Data System (ADS)

    Krizek, M.; Solcova, A.

    2007-08-01

    In 1905, Henri Poincaré predicted the existence of gravitational waves and assumed that their speed c[g] would be that of the speed of light c. If the gravitational aberration would also have the same magnitude as the aberration of light, we would observe several paradoxical phenomena. For instance, the orbit of two bodies of equal mass would be unstable, since two attractive forces arise that are not in line and hence form a couple. This tends to increase the angular momentum, period, and total energy of the system. This can be modelled by a system of ordinary differential equations with delay. A big advantage of computer simulation is that we can easily perform many test for various possible values of the speed of gravity [1]. In [2], Carlip showed that gravitational aberration in general relativity is almost cancelled out by velocity-dependent interactions. This means that rays of sunlight are not parallel to the attractive gravitational force of the Sun, i.e., we do not see the Sun in the direction of its attractive force, but slightly shifted about an angle less than 20``. We show how the actual value of the gravitational aberration can be obtained by measurement of a single angle at a suitable time instant T corresponding to the perihelion of an elliptic orbit. We also derive an a priori error estimate that expresses how acurately T has to be determined to attain the gravitational aberration to a prescribed tolerance. [1] M. Křížek: Numerical experience with the finite speed of gravitational interaction, Math. Comput. Simulation 50 (1999), 237-245. [2] S. Carlip: Aberration and the speed of gravity, Phys. Lett. A 267 (2000), 81-87.

  17. Chromosome Aberrations by Heavy Ions

    NASA Astrophysics Data System (ADS)

    Ballarini, Francesca; Ottolenghi, Andrea

    It is well known that mammalian cells exposed to ionizing radiation can show different types of chromosome aberrations (CAs) including dicentrics, translocations, rings, deletions and complex exchanges. Chromosome aberrations are a particularly relevant endpoint in radiobiology, because they play a fundamental role in the pathways leading either to cell death, or to cell conversion to malignancy. In particular, reciprocal translocations involving pairs of specific genes are strongly correlated (and probably also causally-related) with specific tumour types; a typical example is the BCR-ABL translocation for Chronic Myeloid Leukaemia. Furthermore, aberrations can be used for applications in biodosimetry and more generally as biomarkers of exposure and risk, that is the case for cancer patients monitored during Carbon-ion therapy and astronauts exposed to space radiation. Indeed hadron therapy and astronauts' exposure to space radiation represent two of the few scenarios where human beings can be exposed to heavy ions. After a brief introduction on the main general features of chromosome aberrations, in this work we will address key aspects of the current knowledge on chromosome aberration induction, both from an experimental and from a theoretical point of view. More specifically, in vitro data will be summarized and discussed, outlining important issues such as the role of interphase death/mitotic delay and that of complex-exchange scoring. Some available in vivo data on cancer patients and astronauts will be also reported, together with possible interpretation problems. Finally, two of the few available models of chromosome aberration induction by ionizing radiation (including heavy ions) will be described and compared, focusing on the different assumptions adopted by the authors and on how these models can deal with heavy ions.

  18. Intracavity adaptive correction of a 10 kW, solid-state, heat-capacity laser

    SciTech Connect

    LaFortune, K N; Hurd, R L; Brase, J M; Yamamoto, R M

    2004-05-13

    The Solid-State, Heat-Capacity Laser (SSHCL), under development at Lawrence Livermore National Laboratory (LLNL) is a large aperture (100 cm{sup 2}), confocal, unstable resonator requiring near-diffraction-limited beam quality. There are two primary sources of the aberrations in the system: residual, static aberrations from the fabrication of the optical components and predictable, time-dependent, thermally-induced index gradients within the gain medium. A deformable mirror placed within the cavity is used to correct the aberrations that are sensed externally with a Shack-Hartmann wavefront sensor. Although the complexity of intracavity adaptive correction is greater than that of external correction, it enables control of the mode growth within the resonator, resulting in the ability to correct a more aberrated system longer. The overall system design, measurement techniques and correction algorithms are discussed. Experimental results from initial correction of the static aberrations and dynamic correction of the time-dependent aberrations are presented.

  19. Eigenfunction analysis of stochastic backscatter for characterization of acoustic aberration in medical ultrasound imaging

    NASA Astrophysics Data System (ADS)

    Varslot, Trond; Krogstad, Harald; Mo, Eirik; Angelsen, Bjørn A.

    2004-06-01

    Presented here is a characterization of aberration in medical ultrasound imaging. The characterization is optimal in the sense of maximizing the expected energy in a modified beamformer output of the received acoustic backscatter. Aberration correction based on this characterization takes the form of an aberration correction filter. The situation considered is frequently found in applications when imaging organs through a body wall: aberration is introduced in a layer close to the transducer, and acoustic backscatter from a scattering region behind the body wall is measured at the transducer surface. The scattering region consists of scatterers randomly distributed with very short correlation length compared to the acoustic wavelength of the transmit pulse. The scatterer distribution is therefore assumed to be δ correlated. This paper shows how maximizing the expected energy in a modified beamformer output signal naturally leads to eigenfunctions of a Fredholm integral operator, where the associated kernel function is a spatial correlation function of the received stochastic signal. Aberration characterization and aberration correction are presented for simulated data constructed to mimic aberration introduced by the abdominal wall. The results compare well with what is obtainable using data from a simulated point source.

  20. Higher order aberration comparison between two aspherical intraocular lenses: MC6125AS and Akreos advanced optics

    PubMed Central

    Rajabi, Mohammad Taher; Korouji, Sara; Farjadnia, Mahgol; Naderan, Mohammad; Rajabi, Mohammad Bagher; Khosravi, Bahram; Tabatabaie, Seyed Mehdi

    2015-01-01

    AIM To compare higher order aberrations in two aspherical intraocular lenses (IOLs): Akreos advanced optics (AO) and Dr. Schmidt Microcrystalline 6125 aspheric anterior surface (MC6125AS) with each other. METHODS Forty eyes of 39 patients underwent phacoemulsification and Akreos AO and MC6125AS were implanted in their eyes in a random manner. Three months post-operatively, higher order aberrations including spherical aberration, coma aberration, and total aberrations were measured and compared. RESULTS The total aberration was 0.24±0.17 in eyes with Dr. Schmidt and 0.20±0.01 in eyes with Akreos AO (P=0.361). The mean of coma aberration was 0.17±0.21 and 0.09±0.86 in Dr. Schmidt and Akreos lenses, respectively (P=0.825). Total spherical aberration was almost the same in both groups (Mean: 0.05, P=0.933). Best corrected visual acuity in Akreos AO (0.10±0.68) and Dr. Schmidt (0.09±0.67) did not differ significantly (P=0.700). CONCLUSION There is no statistically significant difference in the higher order aberrations between these two aspherical lenses. PMID:26086009

  1. Color correction strategies in optical design

    NASA Astrophysics Data System (ADS)

    Pfisterer, Richard N.; Vorndran, Shelby D.

    2014-12-01

    An overview of color correction strategies is presented. Starting with basic first-order aberration theory, we identify known color corrected solutions for doublets and triplets. Reviewing the modern approaches of Robb-Mercado, Rayces-Aguilar, and C. de Albuquerque et al, we find that they confirm the existence of glass combinations for doublets and triplets that yield color corrected solutions that we already know exist. Finally we explore the use of the y, ӯ diagram in conjunction with aberration theory to identify the solution space of glasses capable of leading to color corrected solutions in arbitrary optical systems.

  2. Optimal incision sites to reduce corneal aberration variations after small incision phacoemulsification cataract surgery

    PubMed Central

    Chu, Ling; Zhao, Jiang-Yue; Zhang, Jin-Song; Meng, Jie; Wang, Ming-Wu; Yang, Ya-Jing; Yu, Jia-Ming

    2016-01-01

    AIM To analyze the effect of steep meridian small incision phacoemulsification cataract surgery on anterior, posterior and total corneal wavefront aberration. METHODS Steep meridian small incision phacoemulsification cataract surgery was performed in age-related cataract patients which were divided into three groups according to the incision site: 12 o'clock, 9 o'clock and between 9 and 12 o'clock (BENT) incision groups. The preoperative and 3-month postoperative root mean square (RMS) values of anterior, posterior and total corneal wavefront aberration including coma, spherical aberration, and total higher-order aberrations (HOAs), were measured by Pentacam scheimpflug imaging. The mean preoperative and postoperative corneal wavefront aberrations were documented. RESULTS Total corneal aberration and total lower-order aberrations decreased significantly in three groups after operation. RMS value of total HOAs decreased significantly postoperatively in the 12 o'clock incision group (P<0.001). Corneal spherical aberration was statistically significantly lower after steep meridian small incision phacoemulsification cataract surgery in BENT incision group (P<0.05) and Pearson correlation analysis indicated that spherical aberration changes had no significant relationship with total astigmatism changes in all three corneal incision location. CONCLUSION Corneal incision of phacoemulsification cataract surgery can affect corneal wavefront aberration. The 12 o'clock corneal incision eliminated more HOAs and the spherical aberrations decreased in BENT incision group obviously when we selected steep meridian small incision. Cataract lens replacement using wavefront-corrected intraocular lens combined with optimized corneal incision site would improve ocular aberration results. PMID:27162725

  3. Aberration corrected STEM to study an ancient hair dyeing formula

    NASA Astrophysics Data System (ADS)

    Patriarche, G.; Van Elslande, E.; Castaing, J.; Walter, P.

    2014-05-01

    Lead-based chemistry was initiated in ancient Egypt for cosmetic preparation more than 4000 years ago. Here, we study a hair-dyeing recipe using lead salts described in text since Greco-Roman times. We report direct evidence about the shape and distribution of PbS nanocrystals that form within the hair during blackening.

  4. Tomographic diffractive microscopy and multiview profilometry with flexible aberration correction.

    PubMed

    Liu, H; Bailleul, J; Simon, B; Debailleul, M; Colicchio, B; Haeberlé, O

    2014-02-01

    We have developed a tomographic diffractive microscope in reflection, which permits observation of sample surfaces with an improved lateral resolution, compared to a conventional holographic microscope. From the same set of data, high-precision measurements can be performed on the shape of the reflective surface by reconstructing the phase of the diffracted field. Doing so allows for several advantages compared to classical holographic interferometric measurements: improvement in lateral resolution, easier phase unwrapping, reduction of the coherent noise, combined with the high-longitudinal precision provided by interferometric phase measurements. We demonstrate these capabilities by imaging various test samples. PMID:24514193

  5. Method for reducing sidelobe impact of low order aberration in a coronagraph

    NASA Technical Reports Server (NTRS)

    Ftaclas, Christ (Inventor); Crout, Robert R. (Inventor)

    1995-01-01

    The invention relates to a method for reducing a sidelobe impact of low order aberrations using a coronagraph (2) having an apodized occulting mask (10), comprising the steps of: (a) providing in the coronagraph (2) the apodized occulting disk (10) having a transmission profile which graduates from opaque to transparent along its radius and the negative of whose amplitude transmission is a Gaussian profile; (b) determining a predicted sidelobe impact of the aberrations from a particular mix of low order aberration measured in a system as described by the Zernike polynomials; (c) applying the coronagraph to a system point spread function using a given rms width for the Gaussian profile describing the apodized occulting mask (10) and determining an attenuation level of the aberration sidelobes; (d) scaling the Gaussian occulting mask (10) profile to a wider rms width if the sidelobe attenuation level is too low; and (e) repeating the steps (b) through (d) until the attenuation level is acceptable.

  6. Electron Vortex Production and Control Using Aberration Induced Diffraction Catastrophes

    NASA Astrophysics Data System (ADS)

    Petersen, T. C.; Weyland, M.; Paganin, D. M.; Simula, T. P.; Eastwood, S. A.; Morgan, M. J.

    2013-01-01

    An aberration corrected electron microscope is used to create electron diffraction catastrophes, containing arrays of intensity zeros threading vortex cores. Vortices are ascribed to these arrays using catastrophe theory, scalar diffraction integrals, and experimentally retrieved phase maps. From measured wave function phases, obtained using focal-series phase retrieval, the orbital angular momentum density is mapped for highly astigmatic electron probes. We observe vortex rings and topological reconnections of nodal lines by tracking the vortex cores using the retrieved phases.

  7. Stewart platform kinematics and secondary mirror aberration control

    NASA Astrophysics Data System (ADS)

    Schipani, P.; Marty, L.

    2006-06-01

    This work deals with active correction of the aberrations in a telescope by moving the secondary mirror. A special attention is here dedicated to the case of a secondary mirror whose motions are controlled by a 6-6 Stewart Platform (generally called by astronomers simply "hexapod", even if this term is more general). The kinematics of the device is studied; an iterative algorithm to solve the non trivial forward kinematics problem is described.

  8. Analysis of laser beam quality degradation caused by quartic phase aberrations.

    PubMed

    Siegman, A E

    1993-10-20

    Simple formulas are derived for the degradation in the beam-quality factor, M(2), of an arbitrary laser beam caused by quartic phase distortions such as those that might occur in a spherically aberrated optical component, a thermally aberrated laser output window, or a divergent beam emerging from a high-index dielectric medium as in a wide-stripe, unstable-resonator diode laser. A new formula for the defocus correction that is needed to collimate optimally a beam with quartic phase aberration is also derived. Analytical results and numerical examples are given for both radially aberrated and one-dimensionaltransversely aberrated cases, and a simple experimental measurement of the beam-quality degradation produced by a thin plano-convex lens is shown to be in good agreement with the theory. PMID:20856411

  9. Distortion of ultrashort pulses caused by aberrations

    NASA Astrophysics Data System (ADS)

    Horváth, Z. L.; Kovács, A. P.; Bor, Zs.

    The effect of the primary wave aberrations (spherical aberration, astigmatism and coma) on ultrashort pulses is studied by the Nijboer-Zernike theory. The results of the geometrical and the wave optical treatments are compared.

  10. Using geometric algebra to study optical aberrations

    SciTech Connect

    Hanlon, J.; Ziock, H.

    1997-05-01

    This paper uses Geometric Algebra (GA) to study vector aberrations in optical systems with square and round pupils. GA is a new way to produce the classical optical aberration spot diagrams on the Gaussian image plane and surfaces near the Gaussian image plane. Spot diagrams of the third, fifth and seventh order aberrations for square and round pupils are developed to illustrate the theory.

  11. Analysis of nodal aberration properties in off-axis freeform system design.

    PubMed

    Shi, Haodong; Jiang, Huilin; Zhang, Xin; Wang, Chao; Liu, Tao

    2016-08-20

    Freeform surfaces have the advantage of balancing off-axis aberration. In this paper, based on the framework of nodal aberration theory (NAT) applied to the coaxial system, the third-order astigmatism and coma wave aberration expressions of an off-axis system with Zernike polynomial surfaces are derived. The relationship between the off-axis and surface shape acting on the nodal distributions is revealed. The nodal aberration properties of the off-axis freeform system are analyzed and validated by using full-field displays (FFDs). It has been demonstrated that adding Zernike terms, up to nine, to the off-axis system modifies the nodal locations, but the field dependence of the third-order aberration does not change. On this basis, an off-axis two-mirror freeform system with 500 mm effective focal length (EFL) and 300 mm entrance pupil diameter (EPD) working in long-wave infrared is designed. The field constant aberrations induced by surface tilting are corrected by selecting specific Zernike terms. The design results show that the nodes of third-order astigmatism and coma move back into the field of view (FOV). The modulation transfer function (MTF) curves are above 0.4 at 20 line pairs per millimeter (lp/mm) which meets the infrared reconnaissance requirement. This work provides essential insight and guidance for aberration correction in off-axis freeform system design. PMID:27557003

  12. Parametric synthesis of optical systems composed of thin lenses by using the plane-parallel plate aberration properties

    NASA Astrophysics Data System (ADS)

    Ezhova, Kseniia; Zverev, Victor; Ezhova, Vasilisa

    2015-09-01

    The possibility of constructing the optical system with an aplanatic correction of aberrations representing generally combination of the thin lens with an aplanatic meniscus and plane-parallel plate of small thickness is shown.

  13. A Model of Distributed Phase Aberration for Deblurring Phase Estimated from Scattering

    PubMed Central

    Tillett, Jason C.; Astheimer, Jeffrey P.; Waag, Robert C.

    2010-01-01

    Correction of aberration in ultrasound imaging uses the response of a point reflector or its equivalent to characterize the aberration. Because a point reflector is usually unavailable, its equivalent is obtained using statistical methods, such as processing reflections from multiple focal regions in a random medium. However, the validity of methods that use reflections from multiple points is limited to isoplanatic patches for which the aberration is essentially the same. In this study, aberration is modeled by an offset phase screen to relax the isoplanatic restriction. Methods are developed to determine the depth and phase of the screen and to use the model for compensation of aberration as the beam is steered. Use of the model to enhance the performance of the noted statistical estimation procedure is also described. Experimental results obtained with tissue-mimicking phantoms that implement different models and produce different amounts of aberration are presented to show the efficacy of these methods. The improvement in b-scan resolution realized with the model is illustrated. The results show that the isoplanatic patch assumption for estimation of aberration can be relaxed and that propagation-path characteristics and aberration estimation are closely related. PMID:20040448

  14. Metal resist for extreme ultraviolet lithography characterized by scanning transmission electron microscopy

    NASA Astrophysics Data System (ADS)

    Toriumi, Minoru; Sato, Yuta; Koshino, Masanori; Suenaga, Kazu; Itani, Toshiro

    2016-03-01

    We characterized the structures of metal resists used in EUV lithography by low-voltage aberration-corrected scanning transmission electron microscopy (STEM) combined with electron energy-loss spectroscopy (EELS). This study presents the first atomic-level observation of resist components in resist film. The structures of metal (zirconium or titanium) oxide cores are unambiguously identified, and the local elemental distribution in the resist film is obtained. The initial size of zirconium oxide cores is well maintained in the resist film. However, titanium oxide cores tend to aggregate to form an indefinite structure. The spatial distribution of metal cores may influence lithographic characteristics.

  15. Atomic Resolution Transmission Electron Microscopy of Defects in Hexagonal Boron Nitride and Graphene

    NASA Astrophysics Data System (ADS)

    Gibb, Ashley; Alem, Nasim; Song, Chengyu; Ciston, Jim; Zettl, Alex

    2014-03-01

    Monolayer sheets of sp2-bonded materials such as graphene and hexagonal boron nitride (h-BN) have been studied extensively due to their properties including high mechanical strength, thermal conductivity, stability, interesting electronic properties, and potential for integration into novel devices. Understanding the atomic scale structure of defects in these materials is important because defects can significantly affect the physical properties in these materials. In particular, understanding the dynamics of these defects explains much about the material's stability. We have synthesized h-BN and graphene using low pressure chemical vapor deposition and imaged defects using atomic resolution aberration corrected transmission electron microscopy.

  16. Atomic-resolution scanning transmission electron microscopy through 50-nm-thick silicon nitride membranes

    SciTech Connect

    Ramachandra, Ranjan; Jonge, Niels de; Demers, Hendrix

    2011-02-28

    Silicon nitride membranes can be used for windows of environmental chambers for in situ electron microscopy. We report that aberration corrected scanning transmission electron microscopy (STEM) achieved atomic resolution on gold nanoparticles placed on both sides of a 50-nm-thick silicon nitride membrane at 200 keV electron beam energy. Spatial frequencies of 1/1.2 A were visible for a beam semi-angle of 26.5 mrad. Imaging though a 100-nm-thick membrane was also tested. The achieved imaging contrast was evaluated using Monte Carlo simulations of the STEM imaging of a sample of with a representative geometry and composition.

  17. Correlations between corneal and total wavefront aberrations

    NASA Astrophysics Data System (ADS)

    Mrochen, Michael; Jankov, Mirko; Bueeler, Michael; Seiler, Theo

    2002-06-01

    Purpose: Corneal topography data expressed as corneal aberrations are frequently used to report corneal laser surgery results. However, the optical image quality at the retina depends on all optical elements of the eye such as the human lens. Thus, the aim of this study was to investigate the correlations between the corneal and total wavefront aberrations and to discuss the importance of corneal aberrations for representing corneal laser surgery results. Methods: Thirty three eyes of 22 myopic subjects were measured with a corneal topography system and a Tschernig-type wavefront analyzer after the pupils were dilated to at least 6 mm in diameter. All measurements were centered with respect to the line of sight. Corneal and total wavefront aberrations were calculated up to the 6th Zernike order in the same reference plane. Results: Statistically significant correlations (p < 0.05) between the corneal and total wavefront aberrations were found for the astigmatism (C3,C5) and all 3rd Zernike order coefficients such as coma (C7,C8). No statistically significant correlations were found for all 4th to 6th order Zernike coefficients except for the 5th order horizontal coma C18 (p equals 0.003). On average, all Zernike coefficients for the corneal aberrations were found to be larger compared to Zernike coefficients for the total wavefront aberrations. Conclusions: Corneal aberrations are only of limited use for representing the optical quality of the human eye after corneal laser surgery. This is due to the lack of correlation between corneal and total wavefront aberrations in most of the higher order aberrations. Besides this, the data present in this study yield towards an aberration balancing between corneal aberrations and the optical elements within the eye that reduces the aberration from the cornea by a certain degree. Consequently, ideal customized ablations have to take both, corneal and total wavefront aberrations, into consideration.

  18. Evaluation of an automated karyotyping system for chromosome aberration analysis

    NASA Technical Reports Server (NTRS)

    Prichard, Howard M.

    1987-01-01

    Chromosome aberration analysis is a promising complement to conventional radiation dosimetry, particularly in the complex radiation fields encountered in the space environment. The capabilities of a recently developed automated karyotyping system were evaluated both to determine current capabilities and limitations and to suggest areas where future development should be emphasized. Cells exposed to radiometric chemicals and to photon and particulate radiation were evaluated by manual inspection and by automated karyotyping. It was demonstrated that the evaluated programs were appropriate for image digitization, storage, and transmission. However, automated and semi-automated scoring techniques must be advanced significantly if in-flight chromosome aberration analysis is to be practical. A degree of artificial intelligence may be necessary to realize this goal.

  19. Correction methods for underwater turbulence degraded imaging

    NASA Astrophysics Data System (ADS)

    Kanaev, A. V.; Hou, W.; Restaino, S. R.; Matt, S.; Gładysz, S.

    2014-10-01

    The use of remote sensing techniques such as adaptive optics and image restoration post processing to correct for aberrations in a wavefront of light propagating through turbulent environment has become customary for many areas including astronomy, medical imaging, and industrial applications. EO imaging underwater has been mainly concentrated on overcoming scattering effects rather than dealing with underwater turbulence. However, the effects of turbulence have crucial impact over long image-transmission ranges and under extreme turbulence conditions become important over path length of a few feet. Our group has developed a program that attempts to define under which circumstances application of atmospheric remote sensing techniques could be envisioned. In our experiments we employ the NRL Rayleigh-Bénard convection tank for simulated turbulence environment at Stennis Space Center, MS. A 5m long water tank is equipped with heating and cooling plates that generate a well measured thermal gradient that in turn produces various degrees of turbulence. The image or laser beam spot can be propagated along the tank's length where it is distorted by induced turbulence. In this work we report on the experimental and theoretical findings of the ongoing program. The paper will introduce the experimental setup, the techniques used, and the measurements made as well as describe novel methods for postprocessing and correction of images degraded by underwater turbulence.

  20. Chromosome aberrations induced by zebularine in triticale.

    PubMed

    Ma, Xuhui; Wang, Qing; Wang, Yanzhi; Ma, Jieyun; Wu, Nan; Ni, Shuang; Luo, Tengxiao; Zhuang, Lifang; Chu, Chenggen; Cho, Seong-Woo; Tsujimoto, Hisashi; Qi, Zengjun

    2016-07-01

    Chromosome engineering is an important approach for generating wheat germplasm. Efficient development of chromosome aberrations will facilitate the introgression and application of alien genes in wheat. In this study, zebularine, a DNA methylation transferase inhibitor, was successfully used to induce chromosome aberrations in the octoploid triticale cultivar Jinghui#1. Dry seeds were soaked in zebularine solutions (250, 500, and 750 μmol/L) for 24 h, and the 500 μmol/L treatment was tested in three additional treatment times, i.e., 12, 36, and 48 h. All treatments induced aberrations involving wheat and rye chromosomes. Of the 920 cells observed in 67 M1 plants, 340 (37.0%) carried 817 aberrations with an average of 0.89 aberrations per cell (range: 0-12). The aberrations included probable deletions, telosomes and acentric fragments (49.0%), large segmental translocations (28.9%), small segmental translocations (17.1%), intercalary translocations (2.6%), long chromosomes that could carry more than one centromere (2.0%), and ring chromosomes (0.5%). Of 510 M2 plants analyzed, 110 (21.6%) were found to carry stable aberrations. Such aberrations included 79 with varied rye chromosome numbers, 7 with wheat and rye chromosome translocations, 15 with possible rye telosomes/deletions, and 9 with complex aberrations involving variation in rye chromosome number and wheat-rye translocations. These indicated that aberrations induced by zebularine can be steadily transmitted, suggesting that zebularine is a new efficient agent for chromosome manipulation. PMID:27334255

  1. Aberrant Gene Expression in Humans

    PubMed Central

    Yang, Ence; Ji, Guoli; Brinkmeyer-Langford, Candice L.; Cai, James J.

    2015-01-01

    Gene expression as an intermediate molecular phenotype has been a focus of research interest. In particular, studies of expression quantitative trait loci (eQTL) have offered promise for understanding gene regulation through the discovery of genetic variants that explain variation in gene expression levels. Existing eQTL methods are designed for assessing the effects of common variants, but not rare variants. Here, we address the problem by establishing a novel analytical framework for evaluating the effects of rare or private variants on gene expression. Our method starts from the identification of outlier individuals that show markedly different gene expression from the majority of a population, and then reveals the contributions of private SNPs to the aberrant gene expression in these outliers. Using population-scale mRNA sequencing data, we identify outlier individuals using a multivariate approach. We find that outlier individuals are more readily detected with respect to gene sets that include genes involved in cellular regulation and signal transduction, and less likely to be detected with respect to the gene sets with genes involved in metabolic pathways and other fundamental molecular functions. Analysis of polymorphic data suggests that private SNPs of outlier individuals are enriched in the enhancer and promoter regions of corresponding aberrantly-expressed genes, suggesting a specific regulatory role of private SNPs, while the commonly-occurring regulatory genetic variants (i.e., eQTL SNPs) show little evidence of involvement. Additional data suggest that non-genetic factors may also underlie aberrant gene expression. Taken together, our findings advance a novel viewpoint relevant to situations wherein common eQTLs fail to predict gene expression when heritable, rare inter-individual variation exists. The analytical framework we describe, taking into consideration the reality of differential phenotypic robustness, may be valuable for investigating

  2. Aberrant methylation during cervical carcinogenesis.

    PubMed

    Virmani, A K; Muller, C; Rathi, A; Zoechbauer-Mueller, S; Mathis, M; Gazdar, A F

    2001-03-01

    We studied the pattern of aberrant methylation during the multistage pathogenesis of cervical cancers. We analyzed a total of 73 patient samples and 10 cervical cancer cell lines. In addition, tissue samples [peripheral blood lymphocytes (n = 10) and buccal epithelial cells (n = 12)] were obtained from 22 healthy volunteers. On the basis of the results of preliminary analysis, the cervical samples were grouped into three categories: (a) nondysplasia/low-grade cervical intraepithelial neoplasia (CIN; n = 37); (b) high-grade CIN (n = 17); and (c) invasive cancer (n = 19). The methylation status of six genes was determined (p16, RARbeta, FHIT, GSTP1, MGMT, and hMLH1). Our main findings are as follows: (a) methylation was completely absent in control tissues; (b) the frequencies of methylation for all of the genes except hMLH1 were >20% in cervical cancers; (c) aberrant methylation commenced early during multistage pathogenesis and methylation of at least one gene was noted in 30% of the nondysplasia/low-grade CIN group; (d) an increasing trend for methylation was seen with increasing pathological change; (e) methylation of RARbeta and GSTP1 were early events, p16 and MGMT methylation were intermediate events, and FHIT methylation was a late, tumor-associated event; and (f) methylation occurred independently of other risk factors including papillomavirus infection, smoking history, or hormone use. Although our findings need to be extended to a larger series, they suggest that the pattern of aberrant methylation in women with or without dysplasia may help identify subgroups at increased risk for histological progression or cancer development. PMID:11297252

  3. Aberrations for Grazing Incidence Optics

    NASA Technical Reports Server (NTRS)

    Saha, Timo T.

    2008-01-01

    Large number of grazing incidence telescope configurations have been designed and studied. Wolte1 telescopes are commonly used in astronomical applications. Wolter telescopes consist of a paraboloidal primary mirror and a hyperboloidal or an ellipsoidal secondary mirror. There are 8 possible combinations of Wolter telescopes. Out of these possible designs only type 1 and type 2 telescopes are widely used. Type 1 telescope is typically used for x-ray applications and type 2 telescopes are used for EUV applications. Wolter-Schwarzshild (WS) telescopes offer improved image quality over a small field of view. The WS designs are stigmatic and free of third order coma and, therefore, the PSF is significantly better over a small field of view. Typically the image is more symmetric about its centroid. As for the Wolter telescopes there are 8 possible combinations of WS telescopes. These designs have not been widely used because the surface equations are complex parametric equations complicating the analysis and typically the resolution requirements are too low to take full advantage of the WS designs. There are several other design options. Most notable are wide field x-ray telescope designs. Polynomial designs were originally suggested by Burrows4 and hyperboloid-hyperboloid designs for solar physics applications were designed by Harvey5. No general aberration theory exists for grazing incidence telescopes that would cover all the design options. Several authors have studied the aberrations of grazing incidence telescopes. A comprehensive theory of Wolter type 1 and 2 telescopes has been developed. Later this theory was expanded to include all possible combinations of grazing incidence and also normal incidence paraboloid-hyperboloid and paraboloid-ellipsoid telescopes. In this article the aberration theory of Wolter type telescopes is briefly reviewed.

  4. Sources of the monochromatic aberrations induced in human eyes after laser refractive surgery

    NASA Astrophysics Data System (ADS)

    Porter, Jason

    Laser in-situ keratomileusis (LASIK) procedures correct the eye's defocus and astigmatism but also introduce higher order monochromatic aberrations. Little is known about the origins of these induced aberrations. The advent of wavefront sensor technology has made it possible to measure accurately and quickly the aberrations of normal and postoperative LASIK eyes. The goal of this thesis was to exploit this technology to better understand some of the potential mechanisms by which aberrations could be introduced during LASIK. A first step towards investigating these sources was to characterize the aberration changes in post-LASIK eyes. Higher order rms wavefront error increased after conventional and customized LASIK surgery. On average, spherical aberration approximately doubled, and significant changes in vertical and horizontal coma were observed. We examined two sources of postoperative aberrations: the creation of a microkeratome flap and the subsequent laser ablation. Higher order rms increased slightly and there was a wide variation in the response of individual Zernike modes after cutting a flap. The majority of induced spherical aberration was due to the laser ablation and not the flap-cut. Aberrations are also induced by static and dynamic decentrations of the patient's pupil. We found that ablations were typically decentered in the superotemporal direction due to shifts in pupil center location between aberration measurement (dilated) and surgical (undilated) conditions in customized LASIK eyes. There was a weak correlation between the horizontal coma theoretically induced by this offset and that measured postoperatively. Finally, dynamic eye movements during the procedure induce higher order aberrations. We found that the most problematic decentrations during LASIK are relatively slow drifts in eye position. An eye-tracking system with a 2-Hz closed-loop bandwidth could compensate for most eye movements during LASIK. One solution for reducing the

  5. Aberrations of ellipsoidal reflectors for unit magnification.

    PubMed

    Mielenz, K D

    1974-12-01

    Ellipsoidal reflectors are useful for the 1:1 imaging of small objects without spherical and chromatic aberration. The magnitude of the off-axis aberrations of such reflectors is computed by application of Fermat's principle to the Hamiltonian point characteristic. The limiting form of the mirror aperture for which these aberrations do not exceed a set tolerance is an ellipse whose semiaxes depend on object size and angle of incidence. PMID:20134811

  6. Double-pass measurement of human eye aberrations: limitations and practical realization

    NASA Astrophysics Data System (ADS)

    Letfullin, Renat R.; Belyakov, Alexey I.; Cherezova, Tatyana Y.; Kudryashov, Alexis V.

    2004-11-01

    The problem of correct eye aberrations measurement is very important with the rising widespread of a surgical procedure for reducing refractive error in the eye, so called, LASIK (laser-assisted in situ keratomileusis). The double-pass technique commonly used for measuring aberrations of a human eye involves some uncertainties. One of them is loosing the information about odd human eye aberrations. We report about investigations of the applicability limit of the double-pass measurements depending upon the aberrations status introduced by human eye and actual size of the entrance pupil. We evaluate the double-pass effects for various aberrations and different pupil diameters. It is shown that for small pupils the double-pass effects are negligible. The testing and alignment of aberrometer was performed using the schematic eye, developed in our lab. We also introduced a model of human eye based on bimorph flexible mirror. We perform calculations to demonstrate that our schematic eye is capable of reproducing spatial-temporal statistics of aberrations of living eye with normal vision or even myopic or hypermetropic or with high aberrations ones.

  7. Depth aberrations characterization in linear and nonlinear microscopy schemes using a Shack-Hartmann wavefront sensor

    NASA Astrophysics Data System (ADS)

    Aviles-Espinosa, Rodrigo; Andilla, Jordi; Porcar-Guezenec, Rafael; Levecq, Xavier; Artigas, David; Loza-Alvarez, Pablo

    2012-03-01

    The performance of imaging devices such as linear and nonlinear microscopes (NLM) can be limited by the optical properties of the imaged sample. Such an important aspect has already been described using theoretical models due to the difficulties of implementing a direct wavefront sensing scheme. However, these only stand for simple interfaces and cannot be generalized to biological samples given its structural complexity. This has leaded to the development of sensor-less adaptive optics (AO) implementations. In this approach, aberrations are iteratively corrected trough an image related parameter (aberrations are not measured), being prone of causing sample damage. In this work, we perform a practical implementation of a Shack-Hartman wavefront sensor to compensate for sample induced aberrations, demonstrating its applicability in linear and NLM. We perform an extensive analysis of wavefront distortion effects through different depths employing phantom samples. Aberration effects originated by the refractive index mismatch and depth are quantified using the linear and nonlinear guide-star concept. More over we analyze offaxis aberrations in NLM, an important aspect that is commonly overlooked. In this case spherical aberration behaves similarly to the wavefront error compared with the on-axis case. Finally we give examples of aberration compensation using epi-fluorescence and nonlinear microscopy.

  8. Influence of aberrations in microholographic recording

    NASA Astrophysics Data System (ADS)

    Katayama, Ryuichi

    2015-11-01

    The influence of various types of aberrations (spherical, coma, and astigmatic) of recording and readout beams on the readout signal in a microholographic recording was investigated through a numerical simulation. The simulation conditions were that the wavelength of the laser was 405 nm and the numerical aperture of the objective lenses was 0.85. The tolerance of the root-mean-square (RMS) wavefront aberrations was defined as the aberration when the normalized signal level decreased to 0.8. Among the three types of aberrations, the influence of the spherical aberration was the most significant. When both the recording and readout beams were aberrated and the signs of the aberrations were in the worst case, the tolerance of the RMS wavefront aberrations was less than half of the Maréchal's criterion. Moreover, when the RMS wavefront aberrations of the recording and readout beams were within the above tolerance, the bit intervals of 0.13 and 0.65 μm in the inplane and vertical directions, respectively, which correspond to the recording density of 91 bit/μm3 (recording capacity of 16 TB for a 120-mm-diameter optical disk having a 300-μm-thick recording layer), were shown to be feasible for confocal detection with an allowable signal-to-noise ratio.

  9. Corrective Optics For Camera On Telescope

    NASA Technical Reports Server (NTRS)

    Macenka, Steven A.; Meinel, Aden B.

    1994-01-01

    Assembly of tilted, aspherical circularly symmetric mirrors used as corrective optical subsystem for camera mounted on telescope exhibiting both large spherical wave-front error and inherent off-axis astigmatism. Subsystem provides unobscured camera aperture and diffraction-limited camera performance, despite large telescope aberrations. Generic configuration applied in other optical systems in which aberations deliberately introduced into telescopes and corrected in associated cameras. Concept of corrective optical subsystem provides designer with additional degrees of freedom used to optimize optical system.

  10. Aberrations of varied line-space grazing incidence gratings in converging light beams

    NASA Technical Reports Server (NTRS)

    Hettrick, M. C.

    1984-01-01

    Analyses of the imaging properties of several designs for varied-line space gratings in converging beams of light in grazing-incidence spectrometers are presented. An explicit model is defined for the case of a plane-reflection grating intercepting light that converges and is reflected to a stigmatic point associated with the zero-order image of the grating. Smooth spatial variation of the grating constant then permits aberration correction. The aberrations are expressed as polynomials in the grating lens coordinates using power series expansions. Application of the model is illustrated in terms of aberrations experienced with the short wavelength spectrometer on the EUVE satellite. Attention is given to straight and parallel in-plane grooves, curved groove in-plane designs and off-plane grooves. Aberrations due to dispersions and misalignment are also considered.

  11. Adaptive control of an automatic transmission

    SciTech Connect

    Lentz, C.A.; Runde, J.K.; Hunter, J.H.; Wiles, C.R.

    1991-12-10

    This patent describes a vehicular automatic transmission in which a shift from a first speed ratio to a second speed ratio is carried out through concurrent disengagement of a fluid pressure operated off-going torque transmitting device associated with the first speed ratio and engagement of a fluid pressure operated oncoming torque transmitting device associated with the second speed ratio, a method of automatically shifting the transmission. It comprises disengaging the off-going torque transmitting device by reducing its pre-shift engagement pressure, engaging the on-coming torque transmitting device by supplying it with hydraulic pressure according to a pressure command having a predetermined initial value, and thereafter initiating a closed-loop control of the pressure command based on a predefined pattern of input and output speeds chosen to yield high quality shifting, the pressure command achieving a final value upon completion of the closed-loop control; comparing a difference between the final value of the pressure command and the pressure command at the initiation of the closed-loop control with a threshold to detect an aberration; and if the difference exceeds the threshold, adjusting the predetermined initial value by an amount which is a function of the difference so that on the next shift the pressure command will have an initial value which is substantially correct for achieving the predefined pattern of input and output speeds.

  12. Binocular adaptive optics visual simulator: understanding the impact of aberrations on actual vision

    NASA Astrophysics Data System (ADS)

    Fernández, Enrique J.; Prieto, Pedro M.; Artal, Pablo

    2010-02-01

    A novel adaptive optics system is presented for the study of vision. The apparatus is capable for binocular operation. The binocular adaptive optics visual simulator permits measuring and manipulating ocular aberrations of the two eyes simultaneously. Aberrations can be corrected, or modified, while the subject performs visual testing under binocular vision. One of the most remarkable features of the apparatus consists on the use of a single correcting device, and a single wavefront sensor (Hartmann-Shack). Both the operation and the total cost of the instrument largely benefit from this attribute. The correcting device is a liquid-crystal-on-silicon (LCOS) spatial light modulator. The basic performance of the visual simulator consists in the simultaneous projection of the two eyes' pupils onto both the corrector and sensor. Examples of the potential of the apparatus for the study of the impact of the aberrations under binocular vision are presented. Measurements of contrast sensitivity with modified combinations of spherical aberration through focus are shown. Special attention was paid on the simulation of monovision, where one eye is corrected for far vision while the other is focused at near distance. The results suggest complex binocular interactions. The apparatus can be dedicated to the better understanding of the vision mechanism, which might have an important impact in developing new protocols and treatments for presbyopia. The technique and the instrument might contribute to search optimized ophthalmic corrections.

  13. Some Useful Correspondences In Aberration Theory

    NASA Astrophysics Data System (ADS)

    Shafer, David

    1986-10-01

    There are many correspondences between the behavior of monochromatic aberrations and chromatic aberrations. Usually the behavior of the chromatic aberrations is of a lower order than the corresponding monochromatic behavior. The cause of the 5th-order mono-chromatic astigmatism, for example, is similar in type to the cause of the chromatic variation of 3rd-order astigmatism. The stop-shift behavior of 3rd-order monochromatic coma is similar to that of first-order lateral color, and so on. These correspondences are interesting for two reasons. One is that they have not been commented on much before, despite the value of one's being aware of these relationships. Methods used to control a monochromatic aberration may also apply to the corresponding chromatic aberration, and vice-versa, for example. The other benefit to studying this topic is that the chromatic aberrations, which are of a lower order than their monochro-matic correspondences, are much easier to understand and visualize. A simple diagram can illustrate the stop-shift behavior of lateral color much more easily than trying to do the same thing with 3rd-order coma. Finally, the very important distinction between intrinsic and induced aberrations can be best illustrated with chromatic aberrations, because of their lower order.

  14. Harmonic oscillator states in aberration optics

    NASA Technical Reports Server (NTRS)

    Wolf, Kurt Bernardo

    1993-01-01

    The states of the three-dimensional quantum harmonic oscillator classify optical aberrations of axis-symmetric systems due to the isomorphism between the two mathematical structures. Cartesian quanta and angular momentum classifications have their corresponding aberration classifications. The operation of concatenation of optical elements introduces a new operation between harmonic oscillator states.

  15. Aberrant Radial Artery Causing Carpal Tunnel Syndrome

    PubMed Central

    Kokkalis, Zinon T.; Tolis, Konstantinos E.; Megaloikonomos, Panayiotis D.; Panagopoulos, Georgios N.; Igoumenou, Vasilios G.; Mavrogenis, Andreas F.

    2016-01-01

    Anatomical vascular variations are rare causes of carpal tunnel syndrome. An aberrant medial artery is the most common vascular variation, while an aberrant radial artery causing carpal tunnel syndrome is even more rare, with an incidence ranging less than 3%. This article reports a patient with compression of the median nerve at the carpal tunnel by an aberrant superficial branch of the radial artery. An 80- year- old man presented with a 5-year history of right hand carpal tunnel syndrome; Tinel sign, Phalen test and neurophysiological studies were positive. Open carpal tunnel release showed an aberrant superficial branch of the radial artery with its accompanying veins running from radially to medially, almost parallel to the median nerve, ending at the superficial palmar arterial arch. The median nerve was decompressed without ligating the aberrant artery. At the last follow-up, 2 years after diagnosis and treatment the patient is asymptomatic. PMID:27517078

  16. Nodal aberration theory applied to freeform surfaces

    NASA Astrophysics Data System (ADS)

    Fuerschbach, Kyle; Rolland, Jannick P.; Thompson, Kevin P.

    2014-12-01

    When new three-dimensional packages are developed for imaging optical systems, the rotational symmetry of the optical system is often broken, changing its imaging behavior and making the optical performance worse. A method to restore the performance is to use freeform optical surfaces that compensate directly the aberrations introduced from tilting and decentering the optical surfaces. In order to effectively optimize the shape of a freeform surface to restore optical functionality, it is helpful to understand the aberration effect the surface may induce. Using nodal aberration theory the aberration fields induced by a freeform surface in an optical system are explored. These theoretical predications are experimentally validated with the design and implementation of an aberration generating telescope.

  17. Aberrant Radial Artery Causing Carpal Tunnel Syndrome.

    PubMed

    Kokkalis, Zinon T; Tolis, Konstantinos E; Megaloikonomos, Panayiotis D; Panagopoulos, Georgios N; Igoumenou, Vasilios G; Mavrogenis, Andreas F

    2016-06-01

    Anatomical vascular variations are rare causes of carpal tunnel syndrome. An aberrant medial artery is the most common vascular variation, while an aberrant radial artery causing carpal tunnel syndrome is even more rare, with an incidence ranging less than 3%. This article reports a patient with compression of the median nerve at the carpal tunnel by an aberrant superficial branch of the radial artery. An 80- year- old man presented with a 5-year history of right hand carpal tunnel syndrome; Tinel sign, Phalen test and neurophysiological studies were positive. Open carpal tunnel release showed an aberrant superficial branch of the radial artery with its accompanying veins running from radially to medially, almost parallel to the median nerve, ending at the superficial palmar arterial arch. The median nerve was decompressed without ligating the aberrant artery. At the last follow-up, 2 years after diagnosis and treatment the patient is asymptomatic. PMID:27517078

  18. Voids and Mn-rich inclusions in a (Ga,Mn)As ferromagnetic semiconductor investigated by transmission electron microscopy

    NASA Astrophysics Data System (ADS)

    Kovács, A.; Sadowski, J.; Kasama, T.; Domagała, J.; Mathieu, R.; Dietl, T.; Dunin-Borkowski, R. E.

    2011-04-01

    Voids adjacent to cubic (ZnS-type) and hexagonal (NiAs-type) Mn-rich nanocrystals are characterized using aberration-corrected transmission electron microscopy in an annealed Ga0.995Mn0.005As magnetic semiconductor specimen grown by molecular beam epitaxy. Nanobeam electron diffraction measurements suggest that the nanocrystals exhibit deviations in lattice parameter as compared to bulk MnAs. After annealing at 903 K, the magnetic transition temperature of the specimen is likely to be dominated by the presence of cubic ferromagnetic nanocrystals. In situ annealing inside the electron microscope is used to study the nucleation, coalescence, and grain growth of individual nanocrystals.

  19. Probing core-electron orbitals by scanning transmission electron microscopy and measuring the delocalization of core-level excitations

    NASA Astrophysics Data System (ADS)

    Jeong, Jong Seok; Odlyzko, Michael L.; Xu, Peng; Jalan, Bharat; Mkhoyan, K. Andre

    2016-04-01

    By recording low-noise energy-dispersive x-ray spectroscopy maps from crystalline specimens using aberration-corrected scanning transmission electron microscopy, it is possible to probe core-level electron orbitals in real space. Both the 1 s and 2 p orbitals of Sr and Ti atoms in SrTi O3 are probed, and their projected excitation potentials are determined. This paper also demonstrates experimental measurement of the electronic excitation impact parameter and the delocalization of an excitation due to Coulombic beam-orbital interaction.

  20. Pushing the envelope of in situ transmission electron microscopy.

    PubMed

    Ramachandramoorthy, Rajaprakash; Bernal, Rodrigo; Espinosa, Horacio D

    2015-05-26

    Recent major improvements to the transmission electron microscope (TEM) including aberration-corrected electron optics, light-element-sensitive analytical instrumentation, sample environmental control, and high-speed and sensitive direct electron detectors are becoming more widely available. When these advances are combined with in situ TEM tools, such as multimodal testing based on microelectromechanical systems, key measurements and insights on nanoscale material phenomena become possible. In particular, these advances enable metrology that allows for unprecedented correlation to quantum mechanics and the predictions of atomistic models. In this Perspective, we provide a summary of recent in situ TEM research that has leveraged these new TEM capabilities as well as an outlook of the opportunities that exist in the different areas of in situ TEM experimentation. Although these advances have improved the spatial and temporal resolution of TEM, a critical analysis of the various in situ TEM fields reveals that further progress is needed to achieve the full potential of the technology. PMID:25942405

  1. Atomic-Scale Imaging and Spectroscopy for In Situ Liquid Scanning Transmission Electron Microscopy

    SciTech Connect

    Jungjohann, K. L.; Evans, James E.; Aguiar, Jeff; Arslan, Ilke; Browning, Nigel D.

    2012-06-04

    Observation of growth, synthesis, dynamics and electrochemical reactions in the liquid state is an important yet largely unstudied aspect of nanotechnology. The only techniques that can potentially provide the insights necessary to advance our understanding of these mechanisms is simultaneous atomic-scale imaging and quantitative chemical analysis (through spectroscopy) under environmental conditions in the transmission electron microscope (TEM). In this study we describe the experimental and technical conditions necessary to obtain electron energy loss (EEL) spectra from a nanoparticle in colloidal suspension using aberration corrected scanning transmission electron microscopy (STEM) combined with the environmental liquid stage. At a fluid path length below 400 nm, atomic resolution images can be obtained and simultaneous compositional analysis can be achieved. We show that EEL spectroscopy can be used to quantify the total fluid path length around the nanoparticle, and demonstrate characteristic core-loss signals from the suspended nanoparticles can be resolved and analyzed to provide information on the local interfacial chemistry with the surrounding environment. The combined approach using aberration corrected STEM and EEL spectra with the in situ fluid stage demonstrates a plenary platform for detailed investigations of solution based catalysis and biological research.

  2. The BHVI-EyeMapper: Peripheral Refraction and Aberration Profiles

    PubMed Central

    Fedtke, Cathleen; Ehrmann, Klaus; Falk, Darrin; Bakaraju, Ravi C.; Holden, Brien A.

    2014-01-01

    ABSTRACT Purpose The aim of this article was to present the optical design of a new instrument (BHVI-EyeMapper, EM), which is dedicated to rapid peripheral wavefront measurements across the visual field for distance and near, and to compare the peripheral refraction and higher-order aberration profiles obtained in myopic eyes with and without accommodation. Methods Central and peripheral refractive errors (M, J180, and J45) and higher-order aberrations (C[3, 1], C[3, 3], and C[4, 0]) were measured in 26 myopic participants (mean [±SD] age, 20.9 [±2.0] years; mean [±SD] spherical equivalent, −3.00 [±0.90] diopters [D]) corrected for distance. Measurements were performed along the horizontal visual field with (−2.00 to −5.00 D) and without (+1.00 D fogging) accommodation. Changes as a function of accommodation were compared using tilt and curvature coefficients of peripheral refraction and aberration profiles. Results As accommodation increased, the relative peripheral refraction profiles of M and J180 became significantly (p < 0.05) more negative and the profile of M became significantly (p < 0.05) more asymmetric. No significant differences were found for the J45 profiles (p > 0.05). The peripheral aberration profiles of C[3, 1], C[3, 3], and C[4, 0] became significantly (p < 0.05) less asymmetric as accommodation increased, but no differences were found in the curvature. Conclusions The current study showed that significant changes in peripheral refraction and higher-order aberration profiles occurred during accommodation in myopic eyes. With its extended measurement capabilities, that is, permitting rapid peripheral refraction and higher-order aberration measurements up to visual field angles of ±50 degrees for distance and near (up to −5.00 D), the EM is a new advanced instrument that may provide additional insights in the ongoing quest to understand and monitor myopia development. PMID:25105690

  3. Removal of ghost images by using tilted element optical systems with polynomial surfaces for aberration compensation

    NASA Astrophysics Data System (ADS)

    Rogers, Jeremy D.; Tkaczyk, Tomasz S.; Descour, Michael R.; Kärkkäinen, Ari H.; Richards-Kortum, Rebecca

    2006-02-01

    A novel solution to problematic ghost images is implemented by using tilted lens elements with polynomial surfaces. Tilting the lens surfaces sends reflections out of the imaging path. The nonrotationally symmetric polynomial surfaces correct aberrations caused by tilts. The complex lens surfaces are fabricated by using gray-scale lithographic patterning of hybrid solgel glass.

  4. Removal of ghost images by using tilted element optical systems with polynomial surfaces for aberration compensation.

    PubMed

    Rogers, Jeremy D; Tkaczyk, Tomasz S; Descour, Michael R; Kärkkäinen, Ari H O; Richards-Kortum, Rebecca

    2006-02-15

    A novel solution to problematic ghost images is implemented by using tilted lens elements with polynomial surfaces. Tilting the lens surfaces sends reflections out of the imaging path. The nonrotationally symmetric polynomial surfaces correct aberrations caused by tilts. The complex lens surfaces are fabricated by using gray-scale lithographic patterning of hybrid solgel glass. PMID:16496901

  5. Addressing preservation of elastic contrast in energy-filtered transmission electron microscopy.

    PubMed

    Brown, H G; D'Alfonso, A J; Forbes, B D; Allen, L J

    2016-01-01

    Energy-filtered transmission electron microscopy (EFTEM) images with resolutions of the order of an Ångström can be obtained using modern microscopes corrected for chromatic aberration. However, the delocalized nature of the transition potentials for atomic ionization often confounds direct interpretation of EFTEM images, leading to what is known as "preservation of elastic contrast". In this paper we demonstrate how more interpretable images might be obtained by scanning with a focused coherent probe and incoherently averaging the energy-filtered images over probe position. We dub this new imaging technique energy-filtered imaging scanning transmission electron microscopy (EFISTEM). We develop a theoretical framework for EFISTEM and show that it is in fact equivalent to precession EFTEM, where the plane wave illumination is precessed through a range of tilts spanning the same range of angles as the probe forming aperture in EFISTEM. It is demonstrated that EFISTEM delivers similar results to scanning transmission electron microscopy with an electron energy-loss spectrometer but has the advantage that it is immune to coherent aberrations and spatial incoherence of the probe and is also more resilient to scan distortions. PMID:26476801

  6. Aberration-Coreected Electron Microscopy at Brookhaven National Laboratory

    SciTech Connect

    Zhu,Y.; Wall, J.

    2008-04-01

    The last decade witnessed the rapid development and implementation of aberration correction in electron optics, realizing a more-than-70-year-old dream of aberration-free electron microscopy with a spatial resolution below one angstrom [1-9]. With sophisticated aberration correctors, modern electron microscopes now can reveal local structural information unavailable with neutrons and x-rays, such as the local arrangement of atoms, order/disorder, electronic inhomogeneity, bonding states, spin configuration, quantum confinement, and symmetry breaking [10-17]. Aberration correction through multipole-based correctors, as well as the associated improved stability in accelerating voltage, lens supplies, and goniometers in electron microscopes now enables medium-voltage (200-300kV) microscopes to achieve image resolution at or below 0.1nm. Aberration correction not only improves the instrument's spatial resolution but, equally importantly, allows larger objective lens pole-piece gaps to be employed thus realizing the potential of the instrument as a nanoscale property-measurement tool. That is, while retaining high spatial resolution, we can use various sample stages to observe the materials response under various temperature, electric- and magnetic- fields, and atmospheric environments. Such capabilities afford tremendous opportunities to tackle challenging science and technology issues in physics, chemistry, materials science, and biology. The research goal of the electron microscopy group at the Dept. of Condensed Matter Physics and Materials Science and the Center for Functional Nanomaterials, as well as the Institute for Advanced Electron Microscopy, Brookhaven National Laboratory (BNL), is to elucidate the microscopic origin of the physical- and chemical-behavior of materials, and the role of individual, or groups of atoms, especially in their native functional environments. We plan to accomplish this by developing and implementing various quantitative electron

  7. Picometre-precision analysis of scanning transmission electron microscopy images of platinum nanocatalysts.

    PubMed

    Yankovich, Andrew B; Berkels, Benjamin; Dahmen, W; Binev, P; Sanchez, S I; Bradley, S A; Li, Ao; Szlufarska, Izabela; Voyles, Paul M

    2014-01-01

    Measuring picometre-scale shifts in the positions of individual atoms in materials provides new insight into the structure of surfaces, defects and interfaces that influence a broad variety of materials' behaviour. Here we demonstrate sub-picometre precision measurements of atom positions in aberration-corrected Z-contrast scanning transmission electron microscopy images based on the non-rigid registration and averaging of an image series. Non-rigid registration achieves five to seven times better precision than previous methods. Non-rigidly registered images of a silica-supported platinum nanocatalyst show pm-scale contraction of atoms at a (111)/(111) corner towards the particle centre and expansion of a flat (111) facet. Sub-picometre precision and standardless atom counting with <1 atom uncertainty in the same scanning transmission electron microscopy image provide new insight into the three-dimensional atomic structure of catalyst nanoparticle surfaces, which contain the active sites controlling catalytic reactions. PMID:24916914

  8. Picometre-precision analysis of scanning transmission electron microscopy images of platinum nanocatalysts

    NASA Astrophysics Data System (ADS)

    Yankovich, Andrew B.; Berkels, Benjamin; Dahmen, W.; Binev, P.; Sanchez, S. I.; Bradley, S. A.; Li, Ao; Szlufarska, Izabela; Voyles, Paul M.

    2014-06-01

    Measuring picometre-scale shifts in the positions of individual atoms in materials provides new insight into the structure of surfaces, defects and interfaces that influence a broad variety of materials’ behaviour. Here we demonstrate sub-picometre precision measurements of atom positions in aberration-corrected Z-contrast scanning transmission electron microscopy images based on the non-rigid registration and averaging of an image series. Non-rigid registration achieves five to seven times better precision than previous methods. Non-rigidly registered images of a silica-supported platinum nanocatalyst show pm-scale contraction of atoms at a ()/() corner towards the particle centre and expansion of a flat () facet. Sub-picometre precision and standardless atom counting with <1 atom uncertainty in the same scanning transmission electron microscopy image provide new insight into the three-dimensional atomic structure of catalyst nanoparticle surfaces, which contain the active sites controlling catalytic reactions.

  9. Effect of aberrations in vortex spatial filtering

    NASA Astrophysics Data System (ADS)

    Sharma, Manoj Kumar; Joseph, Joby; Senthilkumaran, P.

    2012-11-01

    Edge enhancement is a very important operation in image processing and a spiral phase plate can be used as a radial Hilbert mask for isotropic edge enhancement. In this paper we analyze the effect of various Seidel aberrations on the performance of radial Hilbert mask or the vortex phase mask. The aberrated vortex phase mask is implemented optically with the help of a high resolution, spatial light modulator (SLM). It has also been shown that out of various aberrations astigmatism can introduce anisotropy in the Hilbert mask which causes selective edge enhancement.

  10. Strain-induced growth of oriented graphene layers revealed by in situ transmission electron microscopy observation.

    PubMed

    Wan, Neng; Pan, Wei; Lin, Tao

    2016-06-22

    We report on the observation of the strain-induced oriented alignment of graphene layers during the in situ 80 keV e-beam irradiation of an amorphous carbon structure using an aberration corrected (Cs-corrected) electron transmission microscope. E-beam irradiation promoted the amorphous-to-ordered structure transformation and contributed to the formation of small sized graphene flakes by local structure reconstruction. In the mean time, graphene flakes were driven to rotate and re-orient along the strain direction under the uni-axial stress conditions, which finally connected with each other and produced a high oriented structure. Our observations suggest that strain engineering could be an effective method in tuning the microstructure and properties especially in layer-structured materials. PMID:27150490

  11. Polarization Aberrations in Astronomical Telescopes: The Point Spread Function

    NASA Astrophysics Data System (ADS)

    Breckinridge, James B.; Lam, Wai Sze T.; Chipman, Russell A.

    2015-05-01

    and coronagraph applications. (4) Part of the aberration is a polarization-dependent astigmatism, with a magnitude of 22 milliwaves, which enlarges the PSF image. (5) The orthogonally polarized components of unpolarized sources contain different wavefront aberrations, which differ by approximately 32 milliwaves. This implies that a wavefront correction system cannot optimally correct the aberrations for all polarizations simultaneously. (6) The polarization aberrations couple small parts of each polarization component of the light (~10-4) into the orthogonal polarization where these components cause highly distorted secondary, or "ghost" PSF images. (7) The radius of the spatial extent of the 90% encircled energy of these two ghost PSF image is twice as large as the radius of the Airy diffraction pattern. Coronagraphs for terrestrial exoplanet science are expected to image objects 10-10, or 6 orders of magnitude less than the intensity of the instrument-induced "ghost" PSF image, which will interfere with exoplanet measurements. A polarization aberration expansion which approximates the Jones pupil of the example telescope in six polarization terms is presented in the appendix. Individual terms can be associated with particular polarization defects. The dependence of these terms on angles of incidence, numerical aperture, and the Taylor series representation of the Fresnel equations lead to algebraic relations between these parameters and the scaling of the polarization aberrations. These "design rules" applicable to the example telescope are collected in § 5. Currently, exoplanet coronagraph masks are designed and optimized for scalar diffraction in optical systems. Radiation from the "ghost" PSF image leaks around currently designed image plane masks. Here, we show a vector-wave or polarization optimization is recommended. These effects follow from a natural description of the optical system in terms of the Jones matrices associated with each ray path of interest

  12. Visual and optical performance of eyes with different corneal spherical aberration implanted with aspheric intraocular lens

    PubMed Central

    Gong, Xian-Hui; Zheng, Qin-Xiang; Wang, Na; Chen, Ding; Zhao, Juan; Li, Jin; Zhao, Yun-E

    2012-01-01

    AIM To compare the visual and optical performance of eyes with different corneal spherical aberration (SA) implanted with spherical aberration-free intraocular lens (IOLs). METHODS Thirty-six patients with different corneal SA had phacoemulsification with implantation of spherical aberration-free IOLs. Patients were divided into 3 groups according to the value of preoperative corneal SA. Eyes with corneal SA <0.10µm were assigned to group A, those with 0.10 ≤corneal SA <0.20µm to Group B, and those with 0.20≤ corneal SA <0.35µm to Group C. Best-corrected visual acuity (BCVA), contrast sensitivity, corneal SA, total ocular aberrations, and depth of focus were recorded 3 months postoperatively. Distance-corrected near and intermediate visual acuity was studied to measure depth of focus. RESULTS BCVA and contrast sensitivity were similar between groups. There were no significant differences in distance-corrected near or intermediate visual acuity. Corneal SA was similar before and 3 months after surgery in the 3 groups. With a 5.0mm pupil diameter, root mean square values for total ocular higher-order aberrations (HOAs) were lower in groups A and B than in group C. Total ocular SA was lower in group A than in groups B and C. SA was also lower in group B than in group C. Coma and trefoil were similar between the groups. CONCLUSION Implantation of spherical aberration-free IOLs in eyes with different corneal SA results in similar visual performance at BCVA, contrast sensitivity and depth of focus. PMID:22773981

  13. Transverse chromatic aberration after corneal refractive surgery

    NASA Astrophysics Data System (ADS)

    Anera, R. G.; Jiménez, J. R.; Jiménez del Barco, L.; Hita, E.

    2005-05-01

    An expression has been deduced theoretically from a schematic-eye model, for the transverse or lateral chromatic aberration (TCA) after refractive surgery. The aim was to investigate analytically how chromatic aberration varies after the emmetropization process. These changes in the TCA have been characterized from changes in corneal asphericity. The results indicate that TCA after refractive surgery diminishes as the degree of myopia increases, a trend contrary to that occurring with monochromatic aberrations, such as spherical or coma. These results can explain the fact that the real deterioration of the visual function under photopic conditions detected in those operated on for myopia is less than expected when only monochromatic aberrations are taken into account.

  14. Spherical aberration in electrically thin flat lenses.

    PubMed

    Ruphuy, Miguel; Ramahi, Omar M

    2016-08-01

    We analyze the spherical aberration of a new generation of lenses made of flat electrically thin inhomogeneous media. For such lenses, spherical aberration is analyzed quantitatively and qualitatively, and comparison is made to the classical gradient index rod. Both flat thin and thick lenses are made of gradient index materials, but the physical mechanisms and design equations are different. Using full-wave three-dimensional numerical simulation, we evaluate the spherical aberrations using the Maréchal criterion and show that the thin lens gives significantly better performance than the thick lens (rod). Additionally, based on ray tracing formulation, third-order analysis for longitudinal aberration and optical path difference are presented, showing strong overall performance of thin lenses in comparison to classical rod lenses. PMID:27505651

  15. Aberrations of a horizontal-vertical depolarizer

    NASA Technical Reports Server (NTRS)

    Mcclain, Stephen C.; Chipman, Russell A.; Hillman, Lloyd W.

    1992-01-01

    Ray-trace equations for uniaxial birefringent materials are used here to derive third-order estimates for aberrations that are produced in imaging through uniaxial plates and horizontal-vertical (HV) depolarizers. An HV depolarizer is a spatial pseudodepolarizer; it converts a uniform input polarization state into a continuum of spatially varying polarization states in an output beam. An HV depolarizer consists of two birefringent wedges whose crystal axes are crossed at 90 deg. The interface between the wedges is included, which leads to a spatially varying retardance that provides the spatial pseudodepolarization. In HV depolarizers, spherical aberration, astigmatism, and image doubling are the principal aberrations for on-axis objects. Only spherical aberration occurs in isotropic plates, while the presence of birefringent wedges introduces astigmatism and image doubling. It is shown that image separation is proportional to the magnitude of the retardance variation.

  16. Chromosome aberrations in decondensed sperm DNA

    SciTech Connect

    Preston, R.J.

    1982-01-01

    Factors that could influence the chromosomal aberration frequency observed at first cleavage following in vivo exposure of germ cells to chemical mutagens are discussed. The techniques of chromosome aberration analysis following sperm DNA condensation by in vitro fertilization or fusion seem to be viable research areas for providing information of human germ cell exposures. However, the potential sensitivity of the assay needs to be better understood, and factors that can influence this sensitivity require a great deal of further study using animal models.

  17. Prediction of Visual Acuity from Wavefront Aberrations

    NASA Technical Reports Server (NTRS)

    Watson, Andrew B. (Inventor); Ahumada, Albert J. (Inventor)

    2013-01-01

    A method for generating a visual acuity metric, based on wavefront aberrations (WFAs), associated with a test subject and representing classes of imperfections, such as defocus, astigmatism, coma and spherical aberrations, of the subject's visual system. The metric allows choices of different image template, can predict acuity for different target probabilities, can incorporate different and possibly subject-specific neural transfer functions, can predict acuity for different subject templates, and incorporates a model of the optotype identification task.

  18. Laboratory experiment of a high-contrast imaging coronagraph with new step-transmission filters

    NASA Astrophysics Data System (ADS)

    Dou, Jiangpei; Ren, Deqing; Zhu, Yongtian; Zhang, Xi

    2009-08-01

    We present the latest results of our laboratory experiment of the coronagraph with step-transmission filters. The primary goal of this work is to test the stability of the coronagraph and identify the main factors that limit its performance. At present, a series of step-transmission filters has been designed. These filters were manufactured with Cr film on a glass substrate with a high surface quality. During the process of the experiment of each filter, we have identified several contrast limiting factors, which includes the non-symmetry of the coating film, transmission error, scattered light and the optical aberration caused by the thickness difference of coating film. To eliminate these factors, we developed a procedure for the correct test of the coronagraph and finally it delivered a contrast in the order of 10-6~10-7 at an angular distance of 4λD, which is well consistent with theoretical design. As a follow-up effort, a deformable mirror has been manufactured to correct the wave-front error of the optical system, which should deliver better performance with an extra contrast improvement in the order of 10-2~10-3. It is shown that the step-transmission filter based coronagraph is promising for the high-contrast imaging of earth-like planets.

  19. Accommodation to Wavefront Vergence and Chromatic Aberration

    PubMed Central

    Wang, Yinan; Kruger, Philip B.; Li, James S.; Lin, Peter L.; Stark, Lawrence R.

    2011-01-01

    Purpose Longitudinal chromatic aberration (LCA) provides a cue to accommodation with small pupils. However, large pupils increase monochromatic aberrations, which may obscure chromatic blur. In the present study, we examined the effect of pupil size and LCA on accommodation. Methods Accommodation was recorded by infrared optometer while observers (nine normal trichromats) viewed a sinusoidally moving Maltese cross target in a Badal stimulus system. There were two illumination conditions: white (3000 K; 20 cd/m2) and monochromatic (550 nm with 10 nm bandwidth; 20 cd/m2) and two artificial pupil conditions (3 mm and 5.7 mm). Separately, static measurements of wavefront aberration were made with the eye accommodating to targets between 0 and 4 D (COAS, Wavefront Sciences). Results Large individual differences in accommodation to wavefront vergence and to LCA are a hallmark of accommodation. LCA continues to provide a signal at large pupil sizes despite higher levels of monochromatic aberrations. Conclusions Monochromatic aberrations may defend against chromatic blur at high spatial frequencies, but accommodation responds best to optical vergence and to LCA at 3 c/deg where blur from higher order aberrations is less. PMID:21317666

  20. Angular-dispersion-induced spatiotemporal aberrations in noncollinear optical parametric amplifiers

    SciTech Connect

    Bromage, Jake; Dorrer, Christophe; Zuegel, Jonathan D.

    2010-01-01

    We characterize spatiotemporal aberrations induced in noncollinear optical parametric amplifiers (NOPAs), for the first time (to our knowledge), using spatially resolved spectral interferometry. Measurements show that when the submillimeter pump and signal beams are not correctly aligned, several degrees of pulse-front tilt caused by angular dispersion are introduced by the NOPA angular-dependent gain, without significant loss of bandwidth. After eliminating the pulse-front tilt, analysis of the residual higher-order aberrations shows that far-field intensities reaching 80% of the theoretical limit can be achieved without complex spatiospectral phase optimization.

  1. Pharmacological correction of misfolding of ABC proteins.

    PubMed

    Rudashevskaya, Elena L; Stockner, Thomas; Trauner, Michael; Freissmuth, Michael; Chiba, Peter

    2014-06-01

    The endoplasmic reticulum (ER) quality control system distinguishes between correctly and incorrectly folded proteins to prevent processing of aberrantly folded conformations along the secretory pathway. Non-synonymous mutations can lead to misfolding of ABC proteins and associated disease phenotypes. Specific phenotypes may at least partially be corrected by small molecules, so-called pharmacological chaperones. Screening for folding correctors is expected to open an avenue for treatment of diseases such as cystic fibrosis and intrahepatic cholestasis. PMID:25027379

  2. Pharmacological correction of misfolding of ABC proteins☆

    PubMed Central

    Rudashevskaya, Elena L.; Stockner, Thomas; Trauner, Michael; Freissmuth, Michael; Chiba, Peter

    2014-01-01

    The endoplasmic reticulum (ER) quality control system distinguishes between correctly and incorrectly folded proteins to prevent processing of aberrantly folded conformations along the secretory pathway. Non-synonymous mutations can lead to misfolding of ABC proteins and associated disease phenotypes. Specific phenotypes may at least partially be corrected by small molecules, so-called pharmacological chaperones. Screening for folding correctors is expected to open an avenue for treatment of diseases such as cystic fibrosis and intrahepatic cholestasis. PMID:25027379

  3. Understanding the structure of nanocatalysts with high resolution scanning/transmission electron microscopy

    NASA Astrophysics Data System (ADS)

    Francis, L. D.; Rivas, J.; José-Yacamán, M.

    2014-03-01

    Nanomaterials including nanoparticles, nanowires and nanotubes play an important role in heterogeneous catalysis. Thanks to the rapid improvement of the electron microscopic techniques and with the advent of aberration corrected electron microscopy as well as theoretical methodologies, the potential effects induced by nanocatalysts are better understood than before by unravelling their atomic structure. A brief introduction to advanced electron microscopic techniques namely aberration corrected scanning transmission electron microscopy (Cs-STEM) is presented and subsequently two examples of nanocatalysts are considered in the present review. The first example will focus on the study of bimetallic/core-shell nanoalloys. In heterogeneous catalysis, catalysts containing two or more metals might show significantly different catalytic properties compared to the parent metals and thus are widely utilized in several catalytic reactions. Atom-by-atom insights of the nanoalloy based catalysts ex: Au-Pd will be described in the present review using a combination of advanced electron microscopic and spectroscopic techniques. A related example on the understanding of bimetallic clusters by HAADF-STEM will also be presented in addition to nanoparticles. In the second case understanding the structure of transition metal chalcogenide based nanocatalysts by HRTEM and aberration corrected STEM, for the case of MoS2 will be discussed. MoS2-based catalysts serve as model catalysts and are employed in the hydrodesulphurisations (HDS) reactions in the removal of sulphur from gasoline and related petrochemical products. They have been studied in various forms including nanowires, nanotubes and nanoplates. Their structure, atomic insights and as a consequence elucidation of their corresponding catalytic activity are thus important.

  4. Effect of Higher-Order Spherical Aberration Term on Transfer Function in Electron Microscopy

    NASA Astrophysics Data System (ADS)

    Uchida, Yuji; Fujimoto, Fuminori

    1986-04-01

    The effect of the higher-order spherical aberration coefficient on the transfer function in transmission electron microscopy was calculated. In order to simplify the system, the optical illumination system was assumed to be perfectly coherent and axially symmetric. The result shows that the effect of the fifth-order spherical aberration coefficient, C5, on the usual transfer function with the third-order spherical aberration coefficient Cs\\equivC3{=}0.5 mm for 100 keV electrons cannot be neglected, if high-order Bragg reflections from net planes with smaller lattice spacings than 0.1 nm are utilized for lattice imaging. The effect of the higher-order term due to the defocussing on the transfer function is also discussed.

  5. mBAND Analysis of Late Chromosome Aberrations in Human Lymphocytes Induced by Gamma Rays and Fe Ions

    NASA Technical Reports Server (NTRS)

    Sunagawa, Mayumi; Zhang, Ye; Yeshitla, Samrawit; Kadhim, Munira; Wilson, Bobby; Wu, Honglu

    2014-01-01

    Chromosomal translocations and inversions are considered stable, and cells containing these types of chromosome aberrations can survive multiple cell divisions. An efficient method to detect an inversion is multi-color banding fluorescent in situ hybridization (mBAND) which allows identification of both inter- and intrachromosome aberrations simultaneously. Post irradiation, chromosome aberrations may also arise after multiple cell divisions as a result of genomic instability. To investigate the stable or late-arising chromosome aberrations induced after radiation exposure, we exposed human lymphocytes to gamma rays and Fe ions ex vivo, and cultured the cells for multiple generations. Chromosome aberrations were analyzed in cells collected at first mitosis and at several time intervals during the culture period post irradiation. With gamma irradiation, about half of the damages observed at first mitosis remained after 7 day- and 14 day- culture, suggesting the transmissibility of damages to the surviving progeny. Detailed analysis of chromosome break ends participating in exchanges revealed a greater fraction of break ends involved in intrachromosome aberrations in the 7- and 14-day samples in comparison to the fraction at first mitosis. In particular, simple inversions were found at 7 and 14 days, but not at the first mitosis, suggesting that some of the aberrations might be formed days post irradiation. In contrast, at the doses that produced similar frequencies of gamma-induced chromosome aberrations as observed at first mitosis, a significantly lower yield of aberrations remained at the same population doublings after Fe ion exposure. At these equitoxic doses, more complex type aberrations were observed for Fe ions, indicating that Fe ion-induced initial chromosome damages are more severe and may lead to cell death. Comparison between low and high doses of Fe ion irradiation in the induction of late damages will also be discussed.

  6. Measurement of the atmospheric primary aberrations by a 4-aperture differential image motion monitor

    NASA Astrophysics Data System (ADS)

    Shomali, Ramin; Nasiri, Sadollah; Darudi, Ahmad

    2011-05-01

    The present paper investigates and discusses the ability of the Hartmann test with a 4-aperture differential image motion monitor (DIMM) to measure the atmospheric primary aberrations which, in turn, can be used for the calculation of the atmospheric coherence time. Through performing numerical simulations, we show that the 4-aperture DIMM is able to measure the defocus and astigmatism terms correctly whereas its results are not reliable for the coma. The most important limitations in the measurement of the primary aberrations by the 4-aperture DIMM are the centroid displacements of the spots which are caused by the higher order aberrations. This effect is negligible in the calculation of the defocus and astigmatisms, whereas it cannot be ignored in the calculation of the coma.

  7. Calibration for the errors resulted from aberration in long focal length measurement

    NASA Astrophysics Data System (ADS)

    Yao, Jiang; Luo, Jia; He, Fan; Bai, Jian; Wang, Kaiwei; Hou, Xiyun; Hou, Changlun

    2014-09-01

    In this paper, a high-accuracy calibration method for errors resulted from aberration in long focal length measurement, is presented. Generally, Gaussian Equation is used for calculation without consideration of the errors caused by aberration. However, the errors are the key factor affecting the accuracy in the measurement system of a large aperture and long focal length lens. We creatively introduce an effective way to calibrate the errors, with detailed analysis of the long focal length measurement based on divergent light and Talbot interferometry. Aberration errors are simulated by Zemax. Then, we achieve auto-correction with the help of Visual C++ software and the experimental results reveal that the relative accuracy is better than 0.01%.By comparing modified values with experimental results obtained in knife-edge testing measurement, the proposed method is proved to be highly effective and reliable.

  8. Measuring aberrations in the rat brain by coherence-gated wavefront sensing using a Linnik interferometer

    PubMed Central

    Wang, Jinyu; Léger, Jean-François; Binding, Jonas; Boccara, A. Claude; Gigan, Sylvain; Bourdieu, Laurent

    2012-01-01

    Aberrations limit the resolution, signal intensity and achievable imaging depth in microscopy. Coherence-gated wavefront sensing (CGWS) allows the fast measurement of aberrations in scattering samples and therefore the implementation of adaptive corrections. However, CGWS has been demonstrated so far only in weakly scattering samples. We designed a new CGWS scheme based on a Linnik interferometer and a SLED light source, which is able to compensate dispersion automatically and can be implemented on any microscope. In the highly scattering rat brain tissue, where multiply scattered photons falling within the temporal gate of the CGWS can no longer be neglected, we have measured known defocus and spherical aberrations up to a depth of 400 µm. PMID:23082292

  9. Segment aberration effects on contrast.

    PubMed

    Crossfield, Ian J; Troy, Mitchell

    2007-07-20

    High-contrast imaging, particularly the direct detection of extrasolar planets, is a major science driver for the next generation of telescopes. This science requires the suppression of scattered starlight at extremely high levels and that telescopes be correctly designed today to meet these stringent requirements in the future. The challenge increases in systems with complicated aperture geometries such as obscured, segmented telescopes. Such systems can also require intensive modeling and simulation efforts in order to understand the trade-offs between different optical parameters. The feasibility and development of a contrast prediction tool for use in the design and systems engineering of these telescopes is described. The performance of a particular starlight suppression system on a large segmented telescope is described analytically. These analytical results and the results of a contrast predictor are then compared with the results of a full wave-optics simulation. PMID:17609697

  10. Polarization aberration control for hyper-NA lithographic projection optics at design stage

    NASA Astrophysics Data System (ADS)

    Liu, Xiaolin; Li, Yanqiu; Liu, Ke

    2015-08-01

    For hyper numerical aperture (NA) lithographic projection optics, not only scalar aberration but also polarization aberration (PA) should be controlled. Optical interfaces, coatings and intrinsic birefringence of lens materials can induce polarization aberration, so they cannot be ignored at design phase. There are few comprehensive and systematic studies on PA control at design phase for lithographic optics. In this paper, a lithographic projection lens with 1.2 of NA is designed, the root-mean-square of scalar aberration reach 1nm. For PA control of this system, firstly the influence of different subsets of polarization aberration on imaging performance is analyzed. The results indicate that the scalar transmission and diattenuation mainly cause critical dimension error (CDE), and the scalar phase and retardance mainly cause pattern placement error (PE). The results also show the diattenuation is the main controlled object in the process of PA control. Furthermore, a cooperative design strategy for PA control is proposed, which is to cooperate between custom coating design and the optimization of crystal orientation based on optical structure design. Through the cooperative design, the PA can be greatly reduced, especially diattenuation. The simulation results of the final system reveal that the dynamic range of CDE is suppressed from -12.7nm ~ +4.3nm to -0.1nm ~ +0.9nm after PA control, while keeping PE at an acceptable level.

  11. Aberrant Activity in Degenerated Retinas Revealed by Electrical Imaging

    PubMed Central

    Zeck, Günther

    2016-01-01

    In this review, I present and discuss the current understanding of aberrant electrical activity found in the ganglion cell layer (GCL) of rod-degenerated (rd) mouse retinas. The reported electrophysiological properties revealed by electrical imaging using high-density microelectrode arrays can be subdivided between spiking activity originating from retinal ganglion cells (RGCs) and local field potentials (LFPs) reflecting strong trans-membrane currents within the GCL. RGCs in rd retinas show increased and rhythmic spiking compared to age-matched wild-type retinas. Fundamental spiking frequencies range from 5 to 15 Hz in various mouse models. The rhythmic RGC spiking is driven by a presynaptic network comprising AII amacrine and bipolar cells. In the healthy retina this rhythm-generating circuit is inhibited by photoreceptor input. A unique physiological feature of rd retinas is rhythmic LFP manifested as spatially-restricted low-frequency (5–15 Hz) voltage changes. Their spatiotemporal characterization revealed propagation and correlation with RGC spiking. LFPs rely on gap-junctional coupling and are shaped by glycinergic and by GABAergic transmission. The aberrant RGC spiking and LFPs provide a simple readout of the functionality of the remaining retinal circuitry which can be used in the development of improved vision restoration strategies. PMID:26903810

  12. Mirror-based broadband scanner with minimized aberration

    NASA Astrophysics Data System (ADS)

    Yu, Jiun-Yann; Tzeng, Yu-Yi; Huang, Chen-Han; Chui, Hsiang-Chen; Chu, Shi-Wei

    2009-02-01

    To obtain specific biochemical information in optical scanning microscopy, labeling technique is routinely required. Instead of the complex and invasive sample preparation procedures, incorporating spectral acquisition, which commonly requires a broadband light source, provides another mechanism to enhance molecular contrast. But most current optical scanning system is lens-based and thus the spectral bandwidth is limited to several hundred nanometers due to anti-reflection coating and chromatic aberration. The spectral range of interest in biological research covers ultraviolet to infrared. For example, the absorption peak of water falls around 3 μm, while most proteins exhibit absorption in the UV-visible regime. For imaging purpose, the transmission window of skin and cerebral tissues fall around 1300 and 1800 nm, respectively. Therefore, to extend the spectral bandwidth of an optical scanning system from visible to mid-infrared, we propose a system composed of metallic coated mirrors. A common issue in such a mirror-based system is aberrations induced by oblique incidence. We propose to compensate astigmatism by exchanging the sagittal and tangential planes of the converging spherical mirrors in the scanning system. With the aid of an optical design software, we build a diffraction-limited broadband scanning system with wavefront flatness better than λ/4 at focal plane. Combined with a mirror-based objective this microscopic system will exhibit full spectral capability and will be useful in microscopic imaging and therapeutic applications.

  13. Multiple aberrant hormone receptors in Cushing's syndrome.

    PubMed

    El Ghorayeb, Nada; Bourdeau, Isabelle; Lacroix, André

    2015-10-01

    The mechanisms regulating cortisol production when ACTH of pituitary origin is suppressed in primary adrenal causes of Cushing's syndrome (CS) include diverse genetic and molecular mechanisms. These can lead either to constitutive activation of the cAMP system and steroidogenesis or to its regulation exerted by the aberrant adrenal expression of several hormone receptors, particularly G-protein coupled hormone receptors (GPCR) and their ligands. Screening for aberrant expression of GPCR in bilateral macronodular adrenal hyperplasia (BMAH) and unilateral adrenal tumors of patients with overt or subclinical CS demonstrates the frequent co-expression of several receptors. Aberrant hormone receptors can also exert their activity by regulating the paracrine secretion of ACTH or other ligands for those receptors in BMAH or unilateral tumors. The aberrant expression of hormone receptors is not limited to adrenal CS but can be implicated in other endocrine tumors including primary aldosteronism and Cushing's disease. Targeted therapies to block the aberrant receptors or their ligands could become useful in the future. PMID:25971648

  14. Aberration in proper motions for Galactic stars

    NASA Astrophysics Data System (ADS)

    Liu, J.-C.; Xie, Y.; Zhu, Z.

    2014-12-01

    Accelerations of both the solar system barycenter (SSB) and stars in the MilkyWay cause a systematic observational effect on the stellar proper motions, which was first studied by J. Kovalevsky (2003). This paper intends to extend that work and aims to estimate the magnitude and significance of the aberration in proper motions of stars, especially in the region near the Galactic center (GC). We adopt two models for the Galactic rotation curve to evaluate the aberrational effect on the Galactic plane. We show that the effect of aberration in proper motions depends on the galactocentric distance of stars; it is dominated by the acceleration of stars in the central region of the Galaxy. Then we investigate the applicability of the theoretical expressions: if the orbital period of stars is only a fraction of the light time from the star to the SSB, the expression with approximation proposed by Kovalevsky is not appropriate. With a more suitable formulation, we found that the aberration has no effect on the determination of the stellar orbits on the celestial sphere. In the future this aberrational effect under consideration should be considered with high-accurate astrometry, particularly in constructing the Gaia celestial reference system realized by Galactic stars.

  15. Striatal Activity is Associated with Deficits of Cognitive Control and Aberrant Salience for Patients with Schizophrenia

    PubMed Central

    Ceaser, Alan E.; Barch, Deanna M.

    2016-01-01

    A recent meta-analysis has shown that a large dopamine abnormality exists in the striatum when comparing patients with schizophrenia and controls, and this abnormality is thought to contribute to aberrant salience assignment (or a misattribution of relevance to irrelevant stimuli). This abnormality may also disrupt striatal contributions to cognitive control processing. We examined the relationship between striatal involvement in cognition and aberrant salience symptoms using a task of cognitive control that involves updating, interference control, and simple maintenance. The current study included a sample of 22 patients with schizophrenia and 20 healthy controls and used a slow event-related fMRI design. We predicted that (1) aberrant salience symptoms would be greater for patient's, (2) patients would demonstrate increased errors during interference control trials, given that patients may be inappropriately assigning salience to distracters, and (3) striatal activity during those errors would be correlated with aberrant salience symptoms. We found a trend toward a significant difference between patients and controls on aberrant salience symptoms, and a significant difference between groups on select task conditions. During interference control trials, patients were more likely to inappropriately encode distracters. For patients, both prefrontal and striatal activity was significantly greater when patients inappropriately identified the distracter as correct compared to activity during distracter rejection. During updating, patient prefrontal and striatal activity was significantly lower for incorrect than correct updating trials. Finally, as predicted, for patients the increase of activity during incorrect distracter trials was positively correlated with aberrant salience symptoms, but only for the striatal region. These relationships may have implications for treatments that improve cognitive function and reduce symptom expression. PMID:26869912

  16. Comparison of higher order aberrations in patients with various refractive errors

    PubMed Central

    Khan, Muhammad Saim; Humayun, Sadia; Fawad, Aisha; Ishaq, Mazhar; Arzoo, Sabahat; Mashhadi, Fawad

    2015-01-01

    Objective: To compare the mean root mean square (RMS) of total higher order aberrations (HOAs), coma and spherical aberrations in individuals with myopia, hypermetropia and myopic astigmatism. Methods: This prospective analytical study was conducted at Armed Forces Institute of Ophthalmology, Rawalpindi, Pakistan from Jan 2014 to Dec 2014. Two hundred eyes of 121 patients with age ranging from 18-40 years were included in the study. Patients were divided into 4 group namely Low myopia, High myopia, Astigmatism and Hypermetropia on the basis of refractive error. Included were the patients who had refractive error more than ± 0.5D and best corrected visual acuity (BCVA) of 0.00 or better. Patients who had history of surgery and / or eye disease were excluded from the study. Visual acuity (VA), Spherical equivalent (SE) of refractive error, RMS value of total HOAs, coma and spherical aberrations were evaluated. HOAs were measured with aberrometer (Wavelight analyzer version 1073) at 6 mm pupil size. Results: Age of the patients ranged from 18 years to 40 years with mean age of 29.10±10.6 years. Seventy one (35.5%) were males and 129 (64.5%) were female. Mean RMS value of HOAs, coma and spherical aberrations was calculated in all four groups. RMS of total HOAs and spherical aberrations in hypermetropia was 0.96±0.96 and 0.30±0.42 respectively and it was higher than other three groups. Conclusions: In overall comparison the mean RMS of total HOAs and spherical aberrations was significantly increased in hypermetropia group and there was a statistically significant negative correlation of SE of hypermetropia with RMS of total HOAs and spherical aberration. PMID:26430409

  17. Ocular higher-order aberrations and mesopic pupil size in individuals screened for refractive surgery

    PubMed Central

    Hashemian, Seyed Javad; Soleimani, Mohammad; Foroutan, Alireza; Joshaghani, Mahmood; Ghaempanah, Mohammad Jafar; Jafari, Mohammad Ebrahim; Yaseri, Mehdi

    2012-01-01

    AIM To study the distribution of ocular higher-order aberrations(HOAs) and mesopic pupil size in individuals screened for refractive surgery. METHODS Ocular HOAs and mesopic pupil size were studied in 2 458 eyes of 1 240 patients with myopia, myopic astigmatism and compound myopic astigmatism and 215 eyes of 110 patients with hyperopia, hyperopic astigmatism and compound hyperopic astigmatism using the Zywave aberrometer (Busch& Lomb). All patients had correctable refractive errors without a history of refractive surgery or underlying diseases. Root-mean-square values of HOAs, total spherical aberration, total coma and mesopic pupil size were analyzed. Ocular HOAs were measured across a ≥ 6.0 mm pupil, and pupil size measurements were performed under the mesopic condition. RESULTS The mean values of HOAs, total spherical aberration and total coma in the myopic group were 0.369µm, ±0.233, 0.133± 0.112µm and 0.330±0.188µm, respectively. In the hyperopic group the mean values of HOAs, total spherical aberration and total coma were 0.418µm ±0.214, 0.202±0.209µm and 0.343±0.201µm, respectively. Hyperopes showed greater total HOAs (P<0.01) and total spherical aberration (P<0.01) compared to myopes. In age-matched analysis, only the amount of total spherical aberration was higher in the hyperopic group (P=0.05). Mesopic pupil size in the myopic group was larger (P≤0.05). CONCLUSION The results suggested that significant levels of HOAs were found in both groups which are important for planning refractive surgeries on Iranians. There were significantly higher levels of total spherical aberration in hyperopes compared to myopes. Mesopic pupil size was larger in myopic group. PMID:22762055

  18. Conformal dome correction with counterrotating phase plates

    NASA Astrophysics Data System (ADS)

    Sparrold, Scott W.; Mills, James P.; Knapp, David J.; Ellis, Kenneth S.; Mitchell, Thomas A.; Manhart, Paul K.

    2000-07-01

    Windows and domes that are shaped to aerodynamic requirements can increase range and speed for the host platform. This class of optical systems is referred to as conformal optics. The solution discussed here is intended for conformal missile systems having gimbals that point the optical line of sight through different parts of the dome. A conformal dome induces large amounts of varying aberration, tens to hundreds of waves across gimbal angle, and therefore requires dynamic correction. Space is very constricted in missile sensors, and it is therefore highly desirable to limit the number of motors used for aberration correction. This paper describes the performance of a new class of optical systems that employ counterrotating phase prisms to correct conformal dome aberrations while gimbaling the optical system. The phase surfaces on the prisms are described by Zernike circular polynomials. Since the shear across the phase surfaces is rotational, the only aberrations that are generated are those without rotational symmetry, such as tilt, coma, or astigmatism. Using this approach, CODE VTM was used to analyze and design a compact, high-performance conformal optical system.

  19. Computation of astigmatic and trefoil figure errors and misalignments for two-mirror telescopes using nodal-aberration theory.

    PubMed

    Ju, Guohao; Yan, Changxiang; Gu, Zhiyuan; Ma, Hongcai

    2016-05-01

    In active optics systems, one concern is how to quantitatively separate the effects of astigmatic and trefoil figure errors and misalignments that couple together in determining the total aberration fields when wavefront measurements are available at only a few field points. In this paper, we first quantitatively describe the impact of mount-induced trefoil deformation on the net aberration fields by proposing a modified theoretical formulation for the field-dependent aberration behavior of freeform surfaces based on the framework of nodal aberration theory. This formulation explicitly expresses the quantitative relationships between the magnitude of freeform surfaces and the induced aberration components where the freeform surfaces can be located away from the aperture stop and decentered from the optical axis. On this basis, and in combination with the mathematical presentation of nodal aberration theory for the effects of misalignments, we present the analytic expressions for the aberration fields of two-mirror telescopes in the presence of astigmatic primary mirror figure errors, mount-induced trefoil deformations on both mirrors, and misalignments. We quantitatively separate these effects using the analytical expressions with wavefront measurements at a few field points and pointing errors. Valuable insights are provided on how to separate these coupled effects in the computation process. Monte Carlo simulations are conducted to demonstrate the correctness and accuracy of the analytic method presented in this paper. PMID:27140345

  20. Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography

    PubMed Central

    Chung, Jaebum; Kim, Jinho; Ou, Xiaoze; Horstmeyer, Roarke; Yang, Changhuei

    2016-01-01

    This paper presents a method to simultaneously acquire an aberration-corrected, wide field-of-view fluorescence image and a high-resolution coherent bright-field image using a computational microscopy method. First, the procedure applies Fourier ptychographic microscopy (FPM) to retrieve the amplitude and phase of a sample, at a resolution that significantly exceeds the cutoff spatial frequency of the microscope objective lens. At the same time, redundancy within the set of acquired FPM bright-field images offers a means to estimate microscope aberrations. Second, the procedure acquires an aberrated fluorescence image, and computationally improves its resolution through deconvolution with the estimated aberration map. An experimental demonstration successfully improves the bright-field resolution of fixed, stained and fluorescently tagged HeLa cells by a factor of 4.9, and reduces the error caused by aberrations in a fluorescence image by up to 31%, over a field of view of 6.2 mm by 9.3 mm. For optimal deconvolution, we show the fluorescence image needs to have a signal-to-noise ratio of at least ~18. PMID:26977345

  1. Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography.

    PubMed

    Chung, Jaebum; Kim, Jinho; Ou, Xiaoze; Horstmeyer, Roarke; Yang, Changhuei

    2016-02-01

    This paper presents a method to simultaneously acquire an aberration-corrected, wide field-of-view fluorescence image and a high-resolution coherent bright-field image using a computational microscopy method. First, the procedure applies Fourier ptychographic microscopy (FPM) to retrieve the amplitude and phase of a sample, at a resolution that significantly exceeds the cutoff spatial frequency of the microscope objective lens. At the same time, redundancy within the set of acquired FPM bright-field images offers a means to estimate microscope aberrations. Second, the procedure acquires an aberrated fluorescence image, and computationally improves its resolution through deconvolution with the estimated aberration map. An experimental demonstration successfully improves the bright-field resolution of fixed, stained and fluorescently tagged HeLa cells by a factor of 4.9, and reduces the error caused by aberrations in a fluorescence image by up to 31%, over a field of view of 6.2 mm by 9.3 mm. For optimal deconvolution, we show the fluorescence image needs to have a signal-to-noise ratio of at least ~18. PMID:26977345

  2. Comparison between two different methods to obtain the wavefront aberration function

    NASA Astrophysics Data System (ADS)

    Cruz Félix, Angel S.; Ibarra, Jorge; López, Estela; Rosales, Marco A.; Tepichín, Eduardo

    2010-08-01

    The analysis and measurement of the wavefront aberration function are very important tools that allow us to evaluate the performance of any specified optical system. This technology has been adopted in visual optics for the analysis of optical aberrations in the human eye, before and after being subjected to laser refractive surgery. We have been working in the characterization and evaluation of the objective performance of human eyes that have been subjected to two different surface ablation techniques known as ASA and PASA1. However, optical aberrations in the human eye are time-dependent2 and, hence, difficult to analyze. In order to obtain a static profile from the post-operatory wavefront aberration function we applied these ablation techniques directly over hard contact lenses. In this work we show the comparison between two different methods to obtain the wavefront aberration function from a reference refractive surface, in order to generalize this method and being able to fully characterize hard contact lenses which have been subjected to different ablation techniques typically used in refractive surgery for vision correction. For the first method we used a Shack-Hartmann wavefront sensor, and in the second method we used a Mach-Zehnder type interferometer. We show the preliminary results of this characterization.

  3. An aberrant precision account of autism

    PubMed Central

    Lawson, Rebecca P.; Rees, Geraint; Friston, Karl J.

    2014-01-01

    Autism is a neurodevelopmental disorder characterized by problems with social-communication, restricted interests and repetitive behavior. A recent and thought-provoking article presented a normative explanation for the perceptual symptoms of autism in terms of a failure of Bayesian inference (Pellicano and Burr, 2012). In response, we suggested that when Bayesian inference is grounded in its neural instantiation—namely, predictive coding—many features of autistic perception can be attributed to aberrant precision (or beliefs about precision) within the context of hierarchical message passing in the brain (Friston et al., 2013). Here, we unpack the aberrant precision account of autism. Specifically, we consider how empirical findings—that speak directly or indirectly to neurobiological mechanisms—are consistent with the aberrant encoding of precision in autism; in particular, an imbalance of the precision ascribed to sensory evidence relative to prior beliefs. PMID:24860482

  4. Optical mechanism for aberration of starlight.

    PubMed

    Woodruff, Robert A

    2012-07-01

    We present a physical-optics-based theory for aberration of starlight and show that the influence of the moving sensor on the incident stellar wavefront combined with a finite velocity of light within the sensor can fully account for the aberration phenomena. Our treatment differs from all previous derivations because we include wavefront-imaging physics within the sensor model. Our predictions match existing Earth-based aberration measurements but differ from predictions of the special relativistic-based theory for larger velocities. We derive design parameters for an experiment using an Earth-based sensor containing a refractive optical medium that would experimentally differentiate between these two theories and yield an independent experimental test of time dilation. PMID:22751386

  5. Aberrant immunophenotypes of mantle cell lymphomas.

    PubMed

    Wohlschlaeger, Ch; Lange, K; Merz, H; Feller, A C

    2003-02-01

    Mantle cell lymphomas (MCL) are characterized by cytomorphological criteria, a distinct immunophenotype and a characteristic chromosomal aberration (t(11;14)). In morphological variants of MCL the immunohistochemical constellation with CD5-positivity and CD23-negativity is a helpful and decisive diagnostic aid to differentiate MCL from other B-cell-lymphomas, e.g. lymphocytic lymphomas (B-CLL). In this study the morphological, immunophenotypical, and genetical features of 50 MCL were analysed. Five cases revealed an aberrant immunophenotype with lacking expression of CD5 (n = 3) and positive reactivity to CD23 (n = 2) while cyclin D1 expression could be demonstrated in all 5 cases. These constellations show that there is, besides morphological subgroups, a small group of MCL with aberrant immunophenotypes, which has to be taken into account in the differential diagnosis to lymphocytic lymphoma and other lymphomas. PMID:12688344

  6. Wave-front aberrations analysis by Zernike polynomials based on the annular sub-aperture stitching system

    NASA Astrophysics Data System (ADS)

    Duan, Lei; Hui, Mei; Deng, Jiayuan; Gong, Cheng; Zhao, Yuejin

    2012-11-01

    Annular sub-aperture stitching method was developed for testing large-aperture aspheric surfaces without using of any compensating element for measurement. It is necessary to correct measurement of aspheric optical aberrations and create mathematical description to describe wave-front aberrations. Zernike polynomials are suitable to describe wave aberration functions and data fitting of experimental measurements for the annular sub-aperture stitching system. This paper uses Zernike polynomials to describe the wave-front aberrations of full wave-front and reconstructed wave-front by annular sub-aperture stitching algorithm. At the same time, the imaging quality of the aspheric optical element can be contrasted. The stitching result shows good agreement with the full aperture result.

  7. Extended Depth of Field for High-Resolution Scanning Transmission Electron Microscopy

    SciTech Connect

    Hovden, Robert; Xin, Huolin L.; Muller, David A.

    2010-12-02

    Aberration-corrected scanning transmission electron microscopes (STEMs) provide sub-Angstrom lateral resolution; however, the large convergence angle greatly reduces the depth of field. For microscopes with a small depth of field, information outside of the focal plane quickly becomes blurred and less defined. It may not be possible to image some samples entirely in focus. Extended depth-of-field techniques, however, allow a single image, with all areas in focus, to be extracted from a series of images focused at a range of depths. In recent years, a variety of algorithmic approaches have been employed for bright-field optical microscopy. Here, we demonstrate that some established optical microscopy methods can also be applied to extend the ~6 nm depth of focus of a 100 kV 5th-order aberration-corrected STEM (α{sub max} = 33 mrad) to image Pt-Co nanoparticles on a thick vulcanized carbon support. These techniques allow us to automatically obtain a single image with all the particles in focus as well as a complimentary topography map.

  8. Extended depth of field for high-resolution scanning transmission electron microscopy.

    PubMed

    Hovden, Robert; Xin, Huolin L; Muller, David A

    2011-02-01

    Aberration-corrected scanning transmission electron microscopes (STEMs) provide sub-Angstrom lateral resolution; however, the large convergence angle greatly reduces the depth of field. For microscopes with a small depth of field, information outside of the focal plane quickly becomes blurred and less defined. It may not be possible to image some samples entirely in focus. Extended depth-of-field techniques, however, allow a single image, with all areas in focus, to be extracted from a series of images focused at a range of depths. In recent years, a variety of algorithmic approaches have been employed for bright-field optical microscopy. Here, we demonstrate that some established optical microscopy methods can also be applied to extend the ∼ 6 nm depth of focus of a 100 kV 5th-order aberration-corrected STEM (α max = 33 mrad) to image Pt-Co nanoparticles on a thick vulcanized carbon support. These techniques allow us to automatically obtain a single image with all the particles in focus as well as a complimentary topography map. PMID:21122192

  9. Computational evidence for a discrete-scatterer aberration model in medical ultrasound

    NASA Astrophysics Data System (ADS)

    Lacefield, James C.

    2001-05-01

    Many techniques for correcting ultrasound focus distortion model the aberrating properties of tissue with a single time-shift screen, but simulations and phantom studies suggest single-screen models are ineffective for transmit focus compensation. Extension of the models to include multiple parallel screens is a logical increment in complexity, but the number of screens must be manageable and readily determined to yield practical aberration correction methods. To assess the feasibility of multi-screen strategies, simulations were performed to search for a general form for the aberration profile of breast tissue. Two-dimensional propagation of 3-MHz planar wavefronts through digitized breast specimens was computed using a k-space method [Tabei et al., J. Acoust. Soc. Am. 111, 53-63 (2002)] and waveforms were sampled at 1-mm intervals along the propagation direction. Arrival time, amplitude, and coherence fluctuations were correlated with scattering from distinct structures. This observation was most apparent when the first derivatives of those parameters with respect to the propagation direction were compared with the connective tissue architecture in the specimens. The assumption underlying time-shift screen models that aberration arises from smooth fluctuations in the acoustic properties of tissue merits reexamination. [Research supported by an NSERC Discovery Grant.

  10. Shingles Transmission

    MedlinePlus

    ... on Shingles Immunization Action Coalition Chickenpox Q&As Transmission Language: English Español (Spanish) Recommend on Facebook Tweet ... Prevention & Treatment Related Pages Preventing Varicella Zoster Virus Transmission in Healthcare Settings Related Links Medline Plus NIH ...

  11. Propagation of aberrations through phase-induced amplitude apodization coronagraph.

    PubMed

    Pueyo, Laurent; Kasdin, N Jeremy; Shaklan, Stuart

    2011-02-01

    The specification of polishing requirements for the optics in coronagraphs dedicated to exoplanet detection requires careful and accurate optical modeling. Numerical representations of propagated aberrations through the system as well as simulations of the broadband wavefront compensation system using multiple DMs are critical when one devises an error budget for such a class of instruments. In this communication, we introduce an analytical tool that serves this purpose for phase-induced amplitude apodization (PIAA) coronagraphs. We first start by deriving the analytical form of the propagation of a harmonic ripple through a PIAA unit. Using this result, we derive the chromaticity of the field at any plane in the optical train of a telescope equipped with such a coronagraph. Finally, we study the chromatic response of a two-sequential-DM wavefront actuator correcting such a corrugated field and thus quantify the requirements on the manufacturing of PIAA mirrors. PMID:21293522

  12. Aberration averaging using point spread function for scanning projection systems

    NASA Astrophysics Data System (ADS)

    Ooki, Hiroshi; Noda, Tomoya; Matsumoto, Koichi

    2000-07-01

    Scanning projection system plays a leading part in current DUV optical lithography. It is frequently pointed out that the mechanically induced distortion and field curvature degrade image quality after scanning. On the other hand, the aberration of the projection lens is averaged along the scanning direction. This averaging effect reduces the residual aberration significantly. The aberration averaging based on the point spread function and phase retrieval technique in order to estimate the effective wavefront aberration after scanning is described in this paper. Our averaging method is tested using specified wavefront aberration, and its accuracy is discussed based on the measured wavefront aberration of recent Nikon projection lens.

  13. Aberrations of diffracted wave fields. II. Diffraction gratings.

    PubMed

    Mahajan, V N

    2000-12-01

    The Rayleigh-Sommerfeld theory is applied to diffraction of a spherical wave by a grating. The grating equation is obtained from the aberration-free diffraction pattern, and its aberrations are shown to be the same as the conventional aberrations obtained by using Fermat's principle. These aberrations are shown to be not associated with the diffraction process. Moreover, it is shown that the irradiance distribution of a certain diffraction order is the Fraunhofer diffraction pattern of the grating aperture as a whole aberrated by the aberration of that order. PMID:11140481

  14. Determining the accommodative response from wavefront aberrations.

    PubMed

    Tarrant, Janice; Roorda, Austin; Wildsoet, Christine F

    2010-01-01

    The purpose of this study was to evaluate some of the methods used to calculate objective refractions from wavefront aberrations, to determine their applicability for accommodation research. A wavefront analyzer was used to measure the ocular aberrations of 13 emmetropes and 17 myopes at distance, and 4 near target vergences: 2, 3, 4, and 5 D. The accommodative response was calculated using the following techniques: least squares fitting (Zernike defocus), paraxial curvature matching (Seidel defocus), and 5 optical quality metrics (PFWc, PFSc, PFCc, NS, and VSMTF). We also evaluated a task-specific method of determining optimum focus that used a through-focus procedure to select the image that best optimized both contrast amplitude and gradient (CAG). Neither Zernike nor Seidel defocus appears to be the best method for determining the accommodative response from wavefront aberrations. When the eye has negative spherical aberration, Zernike defocus tends to underestimate, whereas Seidel defocus tends to overestimate the accommodative response. A better approach is to first determine the best image plane using a suitable optical quality metric and then calculate the accommodative error relative to this plane. Of the metrics evaluated, both NS and VSMTF were reasonable choices, with the CAG algorithm being a less preferred alternate. PMID:20616123

  15. Anti-forensics of chromatic aberration

    NASA Astrophysics Data System (ADS)

    Mayer, Owen; Stamm, Matthew C.

    2015-03-01

    Over the past decade, a number of information forensic techniques have been developed to identify digital image manipulation and falsification. Recent research has shown, however, that an intelligent forger can use anti-forensic countermeasures to disguise their forgeries. In this paper, an anti-forensic technique is proposed to falsify the lateral chromatic aberration present in a digital image. Lateral chromatic aberration corresponds to the relative contraction or expansion between an image's color channels that occurs due to a lens's inability to focus all wavelengths of light on the same point. Previous work has used localized inconsistencies in an image's chromatic aberration to expose cut-and-paste image forgeries. The anti-forensic technique presented in this paper operates by estimating the expected lateral chromatic aberration at an image location, then removing deviations from this estimate caused by tampering or falsification. Experimental results are presented that demonstrate that our anti-forensic technique can be used to effectively disguise evidence of an image forgery.

  16. Aberration features in directional dark matter detection

    SciTech Connect

    Bozorgnia, Nassim; Gelmini, Graciela B.; Gondolo, Paolo E-mail: gelmini@physics.ucla.edu

    2012-08-01

    The motion of the Earth around the Sun causes an annual change in the magnitude and direction of the arrival velocity of dark matter particles on Earth, in a way analogous to aberration of stellar light. In directional detectors, aberration of weakly interacting massive particles (WIMPs) modulates the pattern of nuclear recoil directions in a way that depends on the orbital velocity of the Earth and the local galactic distribution of WIMP velocities. Knowing the former, WIMP aberration can give information on the latter, besides being a curious way of confirming the revolution of the Earth and the extraterrestrial provenance of WIMPs. While observing the full aberration pattern requires extremely large exposures, we claim that the annual variation of the mean recoil direction or of the event counts over specific solid angles may be detectable with moderately large exposures. For example, integrated counts over Galactic hemispheres separated by planes perpendicular to Earth's orbit would modulate annually, resulting in Galactic Hemisphere Annual Modulations (GHAM) with amplitudes larger than the usual non-directional annual modulation.

  17. Designing refractive beam shapers via aberration theory

    NASA Astrophysics Data System (ADS)

    Laskin, Alexander; Shealy, David

    2014-10-01

    In this paper, we use aberration theory to design a refractive laser beam shaper in the configuration of two-aspheric lenses, whose analytical equations are known, but rather complicated. Specifically, we use results from third order aberration theory to obtain the parameters of the refracting laser beam shaper from the transverse aberration, which are then used as a starting point for further optimization by using optical design software. This approach was developed during the beginning of the twentieth century, works well for systems with a low numerical aperture, and allows one to define the following parameters of an optical system: radii of curvature, indices of refraction, thicknesses or air gaps, and conic constants of second order aspheric surfaces. We shall consider surfaces of the second-order spherical and conic sections and shall consider the example of designing of a two-lens beam shaper of the Keplerian 1-to-1 telescopic design providing a theoretical flat phase front and a flat-top irradiance profile of the output beam, where the ray mapping function from the input aperture to the output aperture is known from the literature. Explicit expression for third order longitudinal aberration and the Seidel coefficients are expressed in terms beam waist and input beam geometrical parameter, indices, lens radii and conic constants.

  18. Corneal Aberrations Before and After Photorefractive Keratectomy

    PubMed Central

    Rosa, Nicola; De Bernardo, Maddalena; Lanza, Michele; Borrelli, Maria; Fusco, Fabrizia; Flagiello, Antimo

    2010-01-01

    Purpose To determine whether - and which - higher-order corneal aberrations, up to the sixth order, are induced by photorefractive keratectomy (PRK). Methods 197 eyes of 197 patients have been examined with a corneal aberrometer for a 3.5 and a 6.0 mm pupil simulation, both before and 1, 3, 6 months after myopic PRK treatment ranging from −15.25 D to -0.5 D (mean −5.31±2.95 D). The statistical evaluation was performed using a paired Student's T-test. Results After PRK there is a clear-cut increase in almost all the higher-order corneal aberrations for both a 3.5 and a 6.0 mm pupil simulation. These aberrations tend to normalize after 3 and 6 months mainly for a 3.5 mm simulation, whereas such normalization is not present for a 6.0 mm simulation. Conclusions PRK induces significant aberrations both for 3.5 and 6 mm pupils, 1 month after PRK, but a trend towards normalization is evident at the 6 month follow-up for the smaller pupil size.

  19. Liquid Crystal based adaptive optics system to compensate both low and high order aberrations in a model eye

    NASA Astrophysics Data System (ADS)

    Mu, Quanquan; Cao, Zhaoliang; Li, Dayu; Hu, Lifa; Xuan, Li

    2007-02-01

    Based on a simple eye model system, a high resolution adaptive optics retina imaging system was built to demonstrate the availability of using liquid crystal devices as a wave-front corrector for both low and high order aberrations. Myopia glass was used to introduce large low order aberrations. A fiber bundle was used to simulate the retina. After correction, its image at different diopters became very clear. We can get a root mean square (RMS) correction precision of lower than 0.049λ (λ=0.63μm) for over to 10 diopters and the modulation transfer function (MTF) retains 511p/mm, which is nearly the diffraction limited resolution for a 2.7mm pupil diameter. The closed loop bandwidth was nearly 4 Hz, which is capable to track most of the aberration dynamics in a real eye.

  20. [The number of aberrations in aberrant cells as a parameter of chromosomal instability. 1. Characterization of dose dependency].

    PubMed

    Kutsokon', N K; Bezrukov, V F; Lazarenko, L M; Rashydov, N M; Hrodzyns'kyĭ, D M

    2003-01-01

    Analysis of chromosome instability (CI) is of great importance in view of pollution of the environment by genotoxic factors. Frequency of aberrant cells, spectrum of chromosome aberrations, damages of aberrant cell and distribution of aberrations in the cells are the most conventional parameters of CI. We have carried out the comparative analysis of the frequency of aberrant cells and the dynamics of aberrant cell damages induced by different mutagenic factors (alpha-irradiation from 241Am, gamma-irradiation from 60Co and tioTEPA) in Allium-test. This comparative analysis denotes that the studied parameters have different dynamics characterizing different mechanisms of CI in Allium cepa L. PMID:14569619

  1. Three-dimensional STED microscopy of aberrating tissue using dual adaptive optics.

    PubMed

    Patton, Brian R; Burke, Daniel; Owald, David; Gould, Travis J; Bewersdorf, Joerg; Booth, Martin J

    2016-04-18

    When imaging through tissue, the optical inhomogeneities of the sample generate aberrations that can prevent effective Stimulated Emission Depletion (STED) imaging. This is particularly problematic for 3D-enhanced STED. We present here an adaptive optics implementation that incorporates two adaptive optic elements to enable correction in all beam paths, allowing performance improvement in thick tissue samples. We use this to demonstrate 3D STED imaging of complex structures in Drosophila melanogaster brains. PMID:27137319

  2. Three-Dimensional Scanning Transmission Electron Microscopy of Biological Specimens

    PubMed Central

    de Jonge, Niels; Sougrat, Rachid; Northan, Brian M.; Pennycook, Stephen J.

    2010-01-01

    A three-dimensional (3D) reconstruction of the cytoskeleton and a clathrin-coated pit in mammalian cells has been achieved from a focal-series of images recorded in an aberration-corrected scanning transmission electron microscope (STEM). The specimen was a metallic replica of the biological structure comprising Pt nanoparticles 2–3 nm in diameter, with a high stability under electron beam radiation. The 3D dataset was processed by an automated deconvolution procedure. The lateral resolution was 1.1 nm, set by pixel size. Particles differing by only 10 nm in vertical position were identified as separate objects with greater than 20% dip in contrast between them. We refer to this value as the axial resolution of the deconvolution or reconstruction, the ability to recognize two objects, which were unresolved in the original dataset. The resolution of the reconstruction is comparable to that achieved by tilt-series transmission electron microscopy. However, the focal-series method does not require mechanical tilting and is therefore much faster. 3D STEM images were also recorded of the Golgi ribbon in conventional thin sections containing 3T3 cells with a comparable axial resolution in the deconvolved dataset. PMID:20082729

  3. Implementation of a Shack-Hartmann wavefront sensor for the measurement of embryo-induced aberrations using fluorescent microscopy

    NASA Astrophysics Data System (ADS)

    Azucena, Oscar; Kubby, Joel; Crest, Justin; Cao, Jian; Sullivan, William; Kner, Peter; Gavel, Donald; Dillon, Daren; Olivier, Scot

    2009-02-01

    Adaptive optics (AO) improves the quality of astronomical imaging systems by using real time measurement of the turbulent medium in the optical path using a guide star (natural or artificial) as a point source reference beacon. AO has also been applied to vision science to improve the current view of the human eye. This paper will address our current research focused on the improvement of fluorescent microscopy for biological imaging utilizing current AO technology. A Shack-Hartmann wavefront sensor (SHWS) was used to measure the aberration introduced by a Drosophila Melanogaster embryo with an implanted 1 micron fluorescent bead that serves as a point source reference beacon. The measurements show an average peak-to-valley and root-mean-square (RMS) wavefront error of 0.77 micrometers and 0.15 micrometers, respectively. The Zernike coefficients have been measured for these aberrations which indicate that the correction of the first 14 Zernike coefficients should be sufficient to correct the aberrations we have obtained. These results support the utilization of SHWS for biological imaging applications and that a MEMS deformable mirror with 1 micron of stroke and 100 actuators will be sufficient to correct these aberrations. The design, assembly and initial results for the use of a MEMS deformable mirror, SHWS and implanted fluorescent reference beacon for wavefront correction will also be discussed.

  4. Differentiated Effects of Sensory Activities as Abolishing Operations via Non-Contingent Reinforcement on Academic and Aberrant Behavior

    ERIC Educational Resources Information Center

    Mancil, G. Richmond; Haydon, Todd; Boman, Marty

    2016-01-01

    The purpose of the study was to evaluate the effectiveness of sensory activities used as antecedent interventions on the percentage correct on academic tasks and rate of aberrant behavior in three elementary aged children with Autism Spectrum Disorders (ASD). Study activities were conducted in an after school program for children with ASD where…

  5. Primary aberrations in focused radially polarized vortex beams

    NASA Astrophysics Data System (ADS)

    Biss, David P.; Brown, T. G.

    2004-02-01

    We study the effect of primary aberrations on the 3-D polarization of the electric field in a focused lowest order radially polarized beam. A full vector diffraction treatment of the focused beams is used. Attention is given to the effects of primary spherical, astigmatic, and comatic aberrations on the local polarization, Strehl ratio, and aberration induced degradation of the longitudinal field at focus

  6. FTIR spectroscopic imaging and mapping with correcting lenses for studies of biological cells and tissues.

    PubMed

    Kimber, James A; Foreman, Liberty; Turner, Benjamin; Rich, Peter; Kazarian, Sergei G

    2016-06-23

    Histopathology of tissue samples is used to determine the progression of cancer usually by staining and visual analysis. It is recognised that disease progression from healthy tissue to cancerous is accompanied by spectral signature changes in the mid-infrared range. In this work, FTIR spectroscopic imaging in transmission mode using a focal plane array (96 × 96 pixels) has been applied to the characterisation of Barrett's oesophageal adenocarcinoma. To correct optical aberrations, infrared transparent lenses were used of the same material (CaF2) as the slide on which biopsies were fixed. The lenses acted as an immersion objective, reducing scattering and improving spatial resolution. A novel mapping approach using a sliding lens is presented where spectral images obtained with added lenses are stitched together such that the dataset contained a representative section of the oesophageal tissue. Images were also acquired in transmission mode using high-magnification optics for enhanced spatial resolution, as well as with a germanium micro-ATR objective. The reduction of scattering was assessed using k-means clustering. The same tissue section map, which contained a region of high grade dysplasia, was analysed using hierarchical clustering analysis. A reduction of the trough at 1077 cm(-1) in the second derivative spectra was identified as an indicator of high grade dysplasia. In addition, the spatial resolution obtained with the lens using high-magnification optics was assessed by measurements of a sharp interface of polymer laminate, which was also compared with that achieved with micro ATR-FTIR imaging. In transmission mode using the lens, it was determined to be 8.5 μm and using micro-ATR imaging, the resolution was 3 μm for the band at a wavelength of ca. 3 μm. The spatial resolution was also assessed with and without the added lens, in normal and high-magnification modes using a USAF target. Spectroscopic images of cells in transmission mode using two

  7. WISECONDOR: detection of fetal aberrations from shallow sequencing maternal plasma based on a within-sample comparison scheme

    PubMed Central

    Straver, Roy; Sistermans, Erik A.; Holstege, Henne; Visser, Allerdien; Oudejans, Cees B. M.; Reinders, Marcel J. T.

    2014-01-01

    Genetic disorders can be detected by prenatal diagnosis using Chorionic Villus Sampling, but the 1:100 chance to result in miscarriage restricts the use to fetuses that are suspected to have an aberration. Detection of trisomy 21 cases noninvasively is now possible owing to the upswing of next-generation sequencing (NGS) because a small percentage of fetal DNA is present in maternal plasma. However, detecting other trisomies and smaller aberrations can only be realized using high-coverage NGS, making it too expensive for routine practice. We present a method, WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR), which detects small aberrations using low-coverage NGS. The increased detection resolution was achieved by comparing read counts within the tested sample of each genomic region with regions on other chromosomes that behave similarly in control samples. This within-sample comparison avoids the need to re-sequence control samples. WISECONDOR correctly identified all T13, T18 and T21 cases while coverages were as low as 0.15–1.66. No false positives were identified. Moreover, WISECONDOR also identified smaller aberrations, down to 20 Mb, such as del(13)(q12.3q14.3), +i(12)(p10) and i(18)(q10). This shows that prevalent fetal copy number aberrations can be detected accurately and affordably by shallow sequencing maternal plasma. WISECONDOR is available at bioinformatics.tudelft.nl/wisecondor. PMID:24170809

  8. A challenging case due to uncommon aberrancies.

    PubMed

    Waleed, Mohammad; Raza, Ali; Minhaj, Tariq; Houghton, Timothy

    2015-01-01

    A 71-year-old man was referred to a rapid access chest pain clinic by his general practitioner. He presented with a 6-month history of twice weekly central chest pain lasting 2-3 min with walking and exertion, relieved with rest or co-codamol tablets. After initial investigations and a positive myoview scan, he was listed for an elective coronary angiogram. Unfortunately, the procedure was abandoned due to unclear course of the guide wire and a possible aberrant aortic course. Further non-invasive tests were arranged to clarify the anatomy of the vessels. After getting a clear idea of the aberrancies, coronary angiogram was replanned, and the patient underwent successful angiography with angioplasty to one of the coronary arteries, without any complications. PMID:26404545

  9. Transmission eigenvalues

    NASA Astrophysics Data System (ADS)

    Cakoni, Fioralba; Haddar, Houssem

    2013-10-01

    In inverse scattering theory, transmission eigenvalues can be seen as the extension of the notion of resonant frequencies for impenetrable objects to the case of penetrable dielectrics. The transmission eigenvalue problem is a relatively late arrival to the spectral theory of partial differential equations. Its first appearance was in 1986 in a paper by Kirsch who was investigating the denseness of far-field patterns for scattering solutions of the Helmholtz equation or, in more modern terminology, the injectivity of the far-field operator [1]. The paper of Kirsch was soon followed by a more systematic study by Colton and Monk in the context of developing the dual space method for solving the inverse scattering problem for acoustic waves in an inhomogeneous medium [2]. In this paper they showed that for a spherically stratified media transmission eigenvalues existed and formed a discrete set. Numerical examples were also given showing that in principle transmission eigenvalues could be determined from the far-field data. This first period of interest in transmission eigenvalues was concluded with papers by Colton et al in 1989 [3] and Rynne and Sleeman in 1991 [4] showing that for an inhomogeneous medium (not necessarily spherically stratified) transmission eigenvalues, if they existed, formed a discrete set. For the next seventeen years transmission eigenvalues were ignored. This was mainly due to the fact that, with the introduction of various sampling methods to determine the shape of an inhomogeneous medium from far-field data, transmission eigenvalues were something to be avoided and hence the fact that transmission eigenvalues formed at most a discrete set was deemed to be sufficient. In addition, questions related to the existence of transmission eigenvalues or the structure of associated eigenvectors were recognized as being particularly difficult due to the nonlinearity of the eigenvalue problem and the special structure of the associated transmission

  10. LSST Telescope Alignment Plan Based on Nodal Aberration Theory

    NASA Astrophysics Data System (ADS)

    Sebag, J.; Gressler, W.; Schmid, T.; Rolland, J. P.; Thompson, K. P.

    2012-04-01

    The optical alignment of the Large Synoptic Survey Telescope (LSST) is potentially challenging, due to its fast three-mirror optical design and its large 3.5° field of view (FOV). It is highly advantageous to align the three-mirror optical system prior to the integration of the complex science camera on the telescope, which corrects the FOV via three refractive elements and includes the operational wavefront sensors. A telescope alignment method based on nodal aberration theory (NAT) is presented here to address this challenge. Without the science camera installed on the telescope, the on-axis imaging performance of the telescope is diffraction-limited, but the field of view is not corrected. The nodal properties of the three-mirror telescope design have been analyzed and an alignment approach has been developed using the intrinsically linear nodal behavior, which is linked via sensitivities to the misalignment parameters. Since mirror figure errors will exist in any real application, a methodology to introduce primary-mirror figure errors into the analysis has been developed and is also presented.

  11. Transmission eigenvalues

    NASA Astrophysics Data System (ADS)

    Cakoni, Fioralba; Haddar, Houssem

    2013-10-01

    In inverse scattering theory, transmission eigenvalues can be seen as the extension of the notion of resonant frequencies for impenetrable objects to the case of penetrable dielectrics. The transmission eigenvalue problem is a relatively late arrival to the spectral theory of partial differential equations. Its first appearance was in 1986 in a paper by Kirsch who was investigating the denseness of far-field patterns for scattering solutions of the Helmholtz equation or, in more modern terminology, the injectivity of the far-field operator [1]. The paper of Kirsch was soon followed by a more systematic study by Colton and Monk in the context of developing the dual space method for solving the inverse scattering problem for acoustic waves in an inhomogeneous medium [2]. In this paper they showed that for a spherically stratified media transmission eigenvalues existed and formed a discrete set. Numerical examples were also given showing that in principle transmission eigenvalues could be determined from the far-field data. This first period of interest in transmission eigenvalues was concluded with papers by Colton et al in 1989 [3] and Rynne and Sleeman in 1991 [4] showing that for an inhomogeneous medium (not necessarily spherically stratified) transmission eigenvalues, if they existed, formed a discrete set. For the next seventeen years transmission eigenvalues were ignored. This was mainly due to the fact that, with the introduction of various sampling methods to determine the shape of an inhomogeneous medium from far-field data, transmission eigenvalues were something to be avoided and hence the fact that transmission eigenvalues formed at most a discrete set was deemed to be sufficient. In addition, questions related to the existence of transmission eigenvalues or the structure of associated eigenvectors were recognized as being particularly difficult due to the nonlinearity of the eigenvalue problem and the special structure of the associated transmission

  12. AQUIFER TRANSMISSIVITY

    EPA Science Inventory

    Evaluation of groundwater resources requires the knowledge of the capacity of aquifers to store and transmit ground water. This requires estimates of key hydraulic parameters, such as the transmissivity, among others. The transmissivity T (m2/sec) is a hydrauli...

  13. Aberrant phenotypes in Kikuchi’s disease

    PubMed Central

    Wei, Xue-Jing; Zhou, Xiao-Ge; Xie, Jian-Lan; Zheng, Xiao-Dan; Zheng, Yuan-Yuan

    2014-01-01

    Initial reports emphasized the immunophenotypic similarities between benign and malignant T cell populations, while some previous studies indicating that aberrant T-cell antigen loss is a good marker for detecting malignant T-cell proliferation. Recently, we found a very interesting and thought-provoking phenomenon: In benign disease-28 of 38 (73.7%) cases of Kikuchi’s disease also showed aberrant phenotypes with loss of pan-T cell antigens, which makes the differential diagnosis between Kikuchi’s disease and T cell lymphoma more challenging. In our study, 38 cases of Kikuchi’s disease and 30 cases of reactive lymphoid hyperplasia (RLH) were studied by EliVision immunohistochemical staining. As well as TCR gene rearrangement using PCR was negative in 10 tested cases of the Kikuchi’s disease. Among these cases, the most common antigen deficiency was CD5 (22 cases), then CD7 (11 cases), CD2 (8 cases) and CD3 (2 cases). Compared with proliferative and xanthomatous types of Kikuchi’s disease, antigens tended to be lost in necrotizing type. Based on follow-up data, a correlation was not found between the occurrence of aberrant phenotypes and prognosis. In RLH, obvious pan-T cell antigen loss was also not found. In conclusion, this is the first study to demonstrate distinct patterns of antigen loss in Kikuchi’s disease, suggesting that T cell antigen loss is not reliable as an auxiliary diagnostic standard for T cell lymphoma. PMID:25337197

  14. Saving SALT: repairs to the spherical aberration corrector of the Southern African Large Telescope (SALT)

    NASA Astrophysics Data System (ADS)

    O'Donoghue, Darragh E.; O'Connor, James; Crause, Lisa A.; Strumpfer, Francois; Strydom, Ockert J.; Brink, Janus D.; Sass, Craig; Wiid, Eben; Atad-Ettedgui, Eli

    2010-07-01

    The construction of the Southern African Large Telescope (SALT) was largely completed by the end of 2005. At the beginning of 2006, it was realized that the telescope's image quality suffered from optical aberrations, chiefly a focus gradient across the focal plane, but also accompanied by astigmatism and higher order aberrations. In the previous conference in this series, a paper was presented describing the optical system engineering investigation which had been conducted to diagnose the problem. This investigation exonerated the primary mirror as the cause, as well as the science instruments, and was isolated to the interface between the telescope and a major optical sub-system, the spherical aberration corrector (SAC). This is a complex sub-system of four aspheric mirrors which corrects the spherical aberration of the 11-m primary mirror. In the last two years, a solution to this problem was developed which involved removing the SAC from the telescope, installing a modification of the SAC/telescope interface, re-aligning and testing the four SAC mirrors and re-installation on the telescope. This paper describes the plan, discusses the details and shows progress to date and the current status.

  15. Jitter Correction

    NASA Technical Reports Server (NTRS)

    Waegell, Mordecai J.; Palacios, David M.

    2011-01-01

    Jitter_Correct.m is a MATLAB function that automatically measures and corrects inter-frame jitter in an image sequence to a user-specified precision. In addition, the algorithm dynamically adjusts the image sample size to increase the accuracy of the measurement. The Jitter_Correct.m function takes an image sequence with unknown frame-to-frame jitter and computes the translations of each frame (column and row, in pixels) relative to a chosen reference frame with sub-pixel accuracy. The translations are measured using a Cross Correlation Fourier transformation method in which the relative phase of the two transformed images is fit to a plane. The measured translations are then used to correct the inter-frame jitter of the image sequence. The function also dynamically expands the image sample size over which the cross-correlation is measured to increase the accuracy of the measurement. This increases the robustness of the measurement to variable magnitudes of inter-frame jitter

  16. Chromatic variation of aberration: the role of induced aberrations and raytrace direction

    NASA Astrophysics Data System (ADS)

    Berner, A.; Nobis, T.; Shafer, D.; Gross, H.

    2015-09-01

    The design and optimization process of an optical system contains several first order steps. The definition of the appropriate lens type and the fixation of the raytrace direction are some of them. The latter can be understood as a hidden assumption rather than an aware design step. This is usually followed by the determination of the paraxial lens layout calculated for the primary wavelength. It is obvious, that for this primary wavelength the paraxial calculations are independent of raytrace direction. Today, most of the lens designs are specified not to work only for one wavelength, but in a certain wavelength range. Considering such rays of other wavelengths, one can observe that depending on the direction there will already occur differences in the first order chromatic aberrations and additionally in the chromatic variation of the third-order aberrations. The reason for this effect are induced aberrations emerging from one surface to the following surfaces by perturbed ray heights and ray angles. It can be shown, that the total amount of surface-resolved first order chromatic aberrations and the chromatic variation of the five primary aberrations can be split into an intrinsic part and an induced part. The intrinsic part is independent of the raytrace direction whereas the induced part is not.

  17. Closed-loop adaptive optics using a spatial light modulator for sensing and compensating of optical aberrations in ophthalmic applications

    NASA Astrophysics Data System (ADS)

    Akondi, Vyas; Jewel, Md. Atikur Rahman; Vohnsen, Brian

    2014-09-01

    Sensing and compensating of optical aberrations in closed-loop mode using a single spatial light modulator (SLM) for ophthalmic applications is demonstrated. Notwithstanding the disadvantages of the SLM, in certain cases, this multitasking capability of the device makes it advantageous over existing deformable mirrors (DMs), which are expensive and in general used for aberration compensation alone. A closed-loop adaptive optics (AO) system based on a single SLM was built. Beam resizing optics were used to utilize the large active area of the device and hence make it feasible to generate 137 active subapertures for wavefront sensing. While correcting Zernike aberrations up to fourth order introduced with the help of a DM (for testing purposes), diffraction-limited resolution was achieved. It is shown that matched filter and intensity-weighted centroiding techniques stand out among others. Closed-loop wavefront correction of aberrations in backscattered light from the eyes of three healthy human subjects was demonstrated after satisfactory results were obtained using an artificial eye, which was simulated with a short focal length lens and a sheet of white paper as diffuser. It is shown that the closed-loop AO system based on a single SLM is capable of diffraction-limited correction for ophthalmic applications.

  18. Block of gap junctions eliminates aberrant activity and restores light responses during retinal degeneration.

    PubMed

    Toychiev, Abduqodir H; Ivanova, Elena; Yee, Christopher W; Sagdullaev, Botir T

    2013-08-28

    Retinal degeneration leads to progressive photoreceptor cell death, resulting in vision loss. Subsequently, inner retinal neurons develop aberrant synaptic activity, compounding visual impairment. In retinal ganglion cells, light responses driven by surviving photoreceptors are obscured by elevated levels of aberrant spiking activity. Here, we demonstrate in rd10 mice that targeting disruptive neuronal circuitry with a gap junction antagonist can significantly reduce excessive spiking. This treatment increases the sensitivity of the degenerated retina to light stimuli driven by residual photoreceptors. Additionally, this enhances signal transmission from inner retinal neurons to ganglion cells, potentially allowing the retinal network to preserve the fidelity of signals either from prosthetic electronic devices, or from cells optogenetically modified to transduce light. Thus, targeting maladaptive changes to the retina allows for treatments to use existing neuronal tissue to restore light sensitivity, and to augment existing strategies to replace lost photoreceptors. PMID:23986234

  19. Effects of astigmatic aberration in holographic generation of Laguerre-Gaussian beam

    NASA Astrophysics Data System (ADS)

    Wada, Atsushi; Miyamoto, Yoko; Ohtani, Takumi; Nishihara, Noboru; Takeda, Mitsuo

    2001-05-01

    The Laguerre-Gaussian (LG) beam is an optical beam with a phase singularity that propagates along its axis. We have previously reported the fabrication of blazed transmission phase holograms to generate beams with phase singularities. A common problem encountered in the generation of a phase singularity with high charge is that the singularity tends to split into m individual charge 1 singularities, where m is the charge of the original singularity. We have found through numerical simulation that astigmatic aberration can cause a higher-charge phase singularity to split. We have also found that strong astigmatic aberrations make the resulting beam close to a Hermite-Gaussian beam rather than an LG beam. Experimental investigation of these phenomena agree with the numerical simulation.

  20. Few-layer graphene as a support film for transmission electron microscopy imaging of nanoparticles.

    PubMed

    McBride, James R; Lupini, Andrew R; Schreuder, Michael A; Smith, Nathanael J; Pennycook, Stephen J; Rosenthal, Sandra J

    2009-12-01

    One consistent limitation for high-resolution imaging of small nanoparticles is the high background signal from the amorphous carbon support film. With interest growing for smaller and smaller nanostructures, state of the art electron microscopes are becoming necessary for rudimentary tasks, such as nanoparticle sizing. As a monolayer of carbon, free-standing graphene represents the ultimate support film for nanoparticle imaging. In this work, conventional high-resolution transmission electron microscopy (HRTEM) and aberration-corrected scanning transmission electron microscopy (STEM) were used to assess the benefits and feasibility of few-layer graphene support films. Suspensions of few-layer graphene to produce the support films were prepared by simple sonication of exfoliated graphite. The greatest benefit was observed for conventional HRTEM, where lattice resolved imaging of sub 2 nm CdSe nanocrystals was achieved. The few-layer graphene films were also used as a support film for C(s)-corrected STEM and electron energy loss spectroscopy of CuInSe(2) nanocrystals. PMID:20356171

  1. Detecting independent and recurrent copy number aberrations using interval graphs

    PubMed Central

    Wu, Hsin-Ta; Hajirasouliha, Iman; Raphael, Benjamin J.

    2014-01-01

    Motivation: Somatic copy number aberrations (SCNAs) are frequent in cancer genomes, but many of these are random, passenger events. A common strategy to distinguish functional aberrations from passengers is to identify those aberrations that are recurrent across multiple samples. However, the extensive variability in the length and position of SCNAs makes the problem of identifying recurrent aberrations notoriously difficult. Results: We introduce a combinatorial approach to the problem of identifying independent and recurrent SCNAs, focusing on the key challenging of separating the overlaps in aberrations across individuals into independent events. We derive independent and recurrent SCNAs as maximal cliques in an interval graph constructed from overlaps between aberrations. We efficiently enumerate all such cliques, and derive a dynamic programming algorithm to find an optimal selection of non-overlapping cliques, resulting in a very fast algorithm, which we call RAIG (Recurrent Aberrations from Interval Graphs). We show that RAIG outperforms other methods on simulated data and also performs well on data from three cancer types from The Cancer Genome Atlas (TCGA). In contrast to existing approaches that employ various heuristics to select independent aberrations, RAIG optimizes a well-defined objective function. We show that this allows RAIG to identify rare aberrations that are likely functional, but are obscured by overlaps with larger passenger aberrations. Availability: http://compbio.cs.brown.edu/software. Contact: braphael@brown.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:24931984

  2. Chromosomal aberrations in ISS crew members

    NASA Astrophysics Data System (ADS)

    Johannes, Christian; Goedecke, Wolfgang; Antonopoulos, Alexandra

    2012-07-01

    High energy radiation is a major risk factor in manned space missions. Astronauts and cosmonauts are exposed to ionising radiations of cosmic and solar origin, while on the Earth's surface people are well protected by the atmosphere and a deflecting magnetic field. There are now data available describing the dose and the quality of ionising radiation on-board of the International Space Station (ISS). Nonetheless, the effect of increased radiation dose on mutation rates of ISS crew members are hard to predict. Therefore, direct measurements of mutation rates are required in order to better estimate the radiation risk for longer duration missions. The analysis of chromosomal aberrations in peripheral blood lymphocytes is a well established method to measure radiation-induced mutations. We present data of chromosome aberration analyses from lymphocyte metaphase spreads of ISS crew members participating in short term (10-14 days) or long term (around 6 months) missions. From each subject we received two blood samples. The first sample was drawn about 10 days before launch and a second one within 3 days after return from flight. From lymphocyte cultures metaphase plates were prepared on glass slides. Giemsa stained and in situ hybridised metaphases were scored for chromosome changes in pre-flight and post-flight blood samples and the mutation rates were compared. Results obtained in chromosomal studies on long-term flight crew members showed pronounced inter-individual differences in the response to elevated radiation levels. Overall slight but significant elevations of typical radiation induced aberrations, i.e., dicentric chromosomes and reciprocal translocations have been observed. Our data indicate no elevation of mutation rates due to short term stays on-board the ISS.

  3. Local sample thickness determination via scanning transmission electron microscopy defocus series.

    PubMed

    Beyer, A; Straubinger, R; Belz, J; Volz, K

    2016-05-01

    The usable aperture sizes in (scanning) transmission electron microscopy ((S)TEM) have significantly increased in the past decade due to the introduction of aberration correction. In parallel with the consequent increase of convergence angle the depth of focus has decreased severely and optical sectioning in the STEM became feasible. Here we apply STEM defocus series to derive the local sample thickness of a TEM sample. To this end experimental as well as simulated defocus series of thin Si foils were acquired. The systematic blurring of high resolution high angle annular dark field images is quantified by evaluating the standard deviation of the image intensity for each image of a defocus series. The derived dependencies exhibit a pronounced maximum at the optimum defocus and drop to a background value for higher or lower values. The full width half maximum (FWHM) of the curve is equal to the sample thickness above a minimum thickness given by the size of the used aperture and the chromatic aberration of the microscope. The thicknesses obtained from experimental defocus series applying the proposed method are in good agreement with the values derived from other established methods. The key advantages of this method compared to others are its high spatial resolution and that it does not involve any time consuming simulations. PMID:26224521

  4. Aberrations in Fresnel Lenses and Mirrors

    NASA Technical Reports Server (NTRS)

    Gregory, Don

    1999-01-01

    The NASA/MSFC Shooting Star program revealed a number of technical problems that must be solved before solar thermal propulsion can become a reality. The fundamental problem of interest here is the collection of solar energy. This is the first step in the propulsion process and indeed the most important. Everything else depends on the efficiency and focusing ability of the collection lens or mirror. An initial model of Fresnel lens behavior using a wave optics approach has been completed and the results were encouraging enough to warrant an experimental investigation. This experimental investigation confirmed some of the effects predicted and produced invaluable photographic evidence of coherence based diffraction and aberration.

  5. Aberrant splicing and drug resistance in AML.

    PubMed

    de Necochea-Campion, Rosalia; Shouse, Geoffrey P; Zhou, Qi; Mirshahidi, Saied; Chen, Chien-Shing

    2016-01-01

    The advent of next-generation sequencing technologies has unveiled a new window into the heterogeneity of acute myeloid leukemia (AML). In particular, recurrent mutations in spliceosome machinery and genome-wide aberrant splicing events have been recognized as a prominent component of this disease. This review will focus on how these factors influence drug resistance through altered splicing of tumor suppressor and oncogenes and dysregulation of the apoptotic signaling network. A better understanding of these factors in disease progression is necessary to design appropriate therapeutic strategies recognizing specific alternatively spliced or mutated oncogenic targets. PMID:27613060

  6. 3D holographic head mounted display using holographic optical elements with astigmatism aberration compensation.

    PubMed

    Yeom, Han-Ju; Kim, Hee-Jae; Kim, Seong-Bok; Zhang, HuiJun; Li, BoNi; Ji, Yeong-Min; Kim, Sang-Hoo; Park, Jae-Hyeung

    2015-12-14

    We propose a bar-type three-dimensional holographic head mounted display using two holographic optical elements. Conventional stereoscopic head mounted displays may suffer from eye fatigue because the images presented to each eye are two-dimensional ones, which causes mismatch between the accommodation and vergence responses of the eye. The proposed holographic head mounted display delivers three-dimensional holographic images to each eye, removing the eye fatigue problem. In this paper, we discuss the configuration of the bar-type waveguide head mounted displays and analyze the aberration caused by the non-symmetric diffraction angle of the holographic optical elements which are used as input and output couplers. Pre-distortion of the hologram is also proposed in the paper to compensate the aberration. The experimental results show that proposed head mounted display can present three-dimensional see-through holographic images to each eye with correct focus cues. PMID:26698993

  7. Design of a freeform electronic viewfinder coupled to aberration fields of freeform optics.

    PubMed

    Bauer, Aaron; Rolland, Jannick P

    2015-11-01

    The newly formulated theory of aberration fields of freeform surfaces describes the aberrations that freeform Zernike polynomial surfaces can correct within folded powered optical systems. This theory has guided the design of an OLED-based reflective freeform electronic viewfinder covering a 25° full field-of-view with a 12 mm eyebox, which is reported together with a detailed methodology that begins with developing an unobscured starting point and ends with an optimized freeform design, analyzed both in display and visual spaces. In addition, tolerancing of the system points to the potential low sensitivity of these systems to manufacturing tilt (10 arcmin), decenter and despace (100 µm), and figure errors (λ/2 @ 0.632 µm). PMID:26561085

  8. A Monte-Carlo Model for the Formation of Radiation-induced Chromosomal Aberrations

    NASA Technical Reports Server (NTRS)

    Ponomarev, Artem L.; Cornforth, Michael N.; Loucas, Brad D.; Cucinotta, Francis A.

    2009-01-01

    multi-centrics were also recorded. Conclusion: High-LET DNA damage affects the frequencies of chromosomal aberrations. The ratio of rings to dicentrics is correct for the genomic size cut-offs corresponding to available experimental data. The present work predicts a relative abundance of small rings following irradiation by heavy ions.

  9. Lymphocyte chromosomal aberration assay in radiation biodosimetry

    PubMed Central

    Agrawala, Paban K.; Adhikari, J. S.; Chaudhury, N. K.

    2010-01-01

    Exposure to ionizing radiations, whether medical, occupational or accidental, leads to deleterious biological consequences like mortality or carcinogenesis. It is considered that no dose of ionizing radiation exposure is safe. However, once the accurate absorbed dose is estimated, one can be given appropriate medical care and the severe consequences can be minimized. Though several accurate physical dose estimation modalities exist, it is essential to estimate the absorbed dose in biological system taking into account the individual variation in radiation response, so as to plan suitable medical care. Over the last several decades, lots of efforts have been taken to design a rapid and easy biological dosimeter requiring minimum invasive procedures. The metaphase chromosomal aberration assay in human lymphocytes, though is labor intensive and requires skilled individuals, still remains the gold standard for radiation biodosimetry. The current review aims at discussing the human lymphocyte metaphase chromosomal aberration assay and recent developments involving the application of molecular cytogenetic approaches and other technological advancements to make the assay more authentic and simple to use even in the events of mass radiation casualties. PMID:21829315

  10. Memory aberrations, transliminality, and delusional ideation.

    PubMed

    Dagnall, Neil; Munley, Gary; Parker, Andrew

    2008-02-01

    This study investigated the relationships between cognitive-perceptual personality dimensions (transliminality and delusional ideation) and self-report measures of memory error (Oblivion Scale and the Prospective and Retrospective Memory Questionnaire). 100 full- and part-time psychology undergraduate students completed the measures (18 men and 82 women; M = 19.3 yr., SD = 4.4). A positive correlation was found between transliminality and reported memory aberrations (Oblivion Scale scores) and also between transliminality and Prospective and Retrospective Memory Questionnaire scores. Correlations were positive between Peters, et al. Delusions Inventory and the self-report memory measures. Transliminality and Peters, et al. Delusions Inventory scores predicted the number of memory aberrations or slips reported on the Oblivion Scale and Prospective and Retrospective Memory Questionnaire. To explore whether transliminality explained additional variance to that accounted for by the Peters, et al. Delusions Inventory, forward regression was applied and showed aspects of transliminality not accounted for by Peters, et al. Delusions Inventory did not explain additional variance within the self-report memory measures. PMID:18459357

  11. Effects of optical aberration on chromotomographic reconstruction

    NASA Astrophysics Data System (ADS)

    Tervo, Ryan; Hawks, Michael; Perram, Glen; Fickus, Matthew

    2014-06-01

    Chromotomography is a form of hyperspectral imaging that utilizes a spinning diffractive element to resolve a rapidly evolving scene. The system captures both spatial dimensions and the spectral dimension at the same time. Advanced algorithms take the recorded dispersed images and use them to construct the data cube in which each reconstructed image is the recorded scene at a specific wavelength. A simulation tool has been developed which uses Zemax to accurately trace rays through real or proposed optical systems. The simulation is used here to explore the limitations of tomographic reconstruction in both idealized and aberrated imaging systems. Results of the study show the accuracy of reconstructed images depends upon the content of the original target scene, the number of projections measured, and the angle through which the prism is rotated. For cases studied here, 20 projections are sufficient to achieve image quality 99.5±1% of the max value. Reconstructed image quality degrades with aberrations, but no worse than equivalent conventional imagers.

  12. Relationships between chromosome structure and chromosomal aberrations

    NASA Astrophysics Data System (ADS)

    Eidelman, Yuri; Andreev, Sergey

    An interphase nucleus of human lymphocyte was simulated by the novel Monte Carlo tech-nique. The main features of interphase chromosome structure and packaging were taken into account: different levels of chromatin organisation; nonrandom localisation of chromosomes within a nucleus; chromosome loci dynamics. All chromosomes in a nucleus were modelled as polymer globules. A dynamic pattern of intra/interchromosomal contacts was simulated. The detailed information about chromosomal contacts, such as distribution of intrachromoso-mal contacts over the length of each chromosome and dependence of contact probability on genomic separation between chromosome loci, were calculated and compared to the new exper-imental data obtained by the Hi-C technique. Types and frequencies of simple and complex radiation-induced chromosomal exchange aberrations (CA) induced by X-rays were predicted with taking formation and decay of chromosomal contacts into account. Distance dependence of exchange formation probability was calculated directly. mFISH data for human lymphocytes were analysed. The calculated frequencies of simple CA agreed with the experimental data. Complex CA were underestimated despite the dense packaging of chromosome territories within a nucleus. Possible influence of chromosome-nucleus structural organisation on the frequency and spectrum of radiation-induced chromosome aberrations is discussed.

  13. 47 CFR 80.90 - Suspension of transmission.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 47 Telecommunication 5 2013-10-01 2013-10-01 false Suspension of transmission. 80.90 Section 80.90... transmission. Transmission must be suspended immediately upon detection of a transmitter malfunction and must remain suspended until the malfunction is corrected, except for transmission concerning the...

  14. 47 CFR 101.207 - Suspension of transmission.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 47 Telecommunication 5 2012-10-01 2012-10-01 false Suspension of transmission. 101.207 Section 101... FIXED MICROWAVE SERVICES Operational Requirements § 101.207 Suspension of transmission. Transmission... must remain suspended until such deviation is corrected, except for transmission concerning...

  15. 47 CFR 101.207 - Suspension of transmission.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 47 Telecommunication 5 2013-10-01 2013-10-01 false Suspension of transmission. 101.207 Section 101... FIXED MICROWAVE SERVICES Operational Requirements § 101.207 Suspension of transmission. Transmission... must remain suspended until such deviation is corrected, except for transmission concerning...

  16. 47 CFR 101.207 - Suspension of transmission.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 47 Telecommunication 5 2014-10-01 2014-10-01 false Suspension of transmission. 101.207 Section 101... FIXED MICROWAVE SERVICES Operational Requirements § 101.207 Suspension of transmission. Transmission... must remain suspended until such deviation is corrected, except for transmission concerning...

  17. 47 CFR 80.90 - Suspension of transmission.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 47 Telecommunication 5 2012-10-01 2012-10-01 false Suspension of transmission. 80.90 Section 80.90... transmission. Transmission must be suspended immediately upon detection of a transmitter malfunction and must remain suspended until the malfunction is corrected, except for transmission concerning the...

  18. 47 CFR 80.90 - Suspension of transmission.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 47 Telecommunication 5 2014-10-01 2014-10-01 false Suspension of transmission. 80.90 Section 80.90... transmission. Transmission must be suspended immediately upon detection of a transmitter malfunction and must remain suspended until the malfunction is corrected, except for transmission concerning the...

  19. 47 CFR 80.90 - Suspension of transmission.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 47 Telecommunication 5 2010-10-01 2010-10-01 false Suspension of transmission. 80.90 Section 80.90... transmission. Transmission must be suspended immediately upon detection of a transmitter malfunction and must remain suspended until the malfunction is corrected, except for transmission concerning the...

  20. 47 CFR 80.90 - Suspension of transmission.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 47 Telecommunication 5 2011-10-01 2011-10-01 false Suspension of transmission. 80.90 Section 80.90... transmission. Transmission must be suspended immediately upon detection of a transmitter malfunction and must remain suspended until the malfunction is corrected, except for transmission concerning the...

  1. Transmissible amyloid.

    PubMed

    Tjernberg, L O; Rising, A; Johansson, J; Jaudzems, K; Westermark, P

    2016-08-01

    There are around 30 human diseases associated with protein misfolding and amyloid formation, each one caused by a certain protein or peptide. Many of these diseases are lethal and together they pose an enormous burden to society. The prion protein has attracted particular interest as being shown to be the pathogenic agent in transmissible diseases such as kuru, Creutzfeldt-Jakob disease and bovine spongiform encephalopathy. Whether similar transmission could occur also in other amyloidoses such as Alzheimer's disease, Parkinson's disease and serum amyloid A amyloidosis is a matter of intense research and debate. Furthermore, it has been suggested that novel biomaterials such as artificial spider silk are potentially amyloidogenic. Here, we provide a brief introduction to amyloid, prions and other proteins involved in amyloid disease and review recent evidence for their potential transmission. We discuss the similarities and differences between amyloid and silk, as well as the potential hazards associated with protein-based biomaterials. PMID:27002185

  2. Aberrations caused by mechanical misalignments in electrostatic quadrupole lens systems

    NASA Astrophysics Data System (ADS)

    Baranova, L. A.; Read, F. H.

    Image aberrations resulting from small misalignments in quadrupole lenses multiplets have been analysed. Analytical formulas for the coefficients of the beam displacement, astigmatism and coma associated with misalignments in a general quadrupole lens system have been derived. Numerical computations of systems of three and four quadrupole lenses have also been carried out. The aberration figures obtained for systems with and without a mechanical defect are compared. The aberration coefficients that have been obtained can be used for estimating tolerance limits for lens misalignments.

  3. Two well-corrected four-mirror telescopes

    NASA Technical Reports Server (NTRS)

    Korsch, D.

    1974-01-01

    A study has been conducted of a configuration resembling that of a Cassegrain telescope with two nested mirrors in the plane of the primary and two nested mirrors in the plane of the secondary. The focal plane was located in the plane of the first and the third mirror. The four surfaces available in the device for corrections made it possible to correct for third-order spherical aberration, coma, astigmatism, and distortion.

  4. Rotorcraft transmissions

    NASA Technical Reports Server (NTRS)

    Coy, John J.

    1990-01-01

    Highlighted here is that portion of the Lewis Research Center's helicopter propulsion systems program that deals with drive train technology and the related mechanical components. The major goals of the program are to increase life, reliability, and maintainability, to reduce weight, noise, and vibration, and to maintain the relatively high mechanical efficiency of the gear train. The current activity emphasizes noise reduction technology and analytical code development, followed by experimental verification. Selected significant advances in technology for transmissions are reviewed, including advanced configurations and new analytical tools. Finally, the plan for transmission research in the future is presented.

  5. A CORRECTION.

    PubMed

    Johnson, D

    1940-03-22

    IN a recently published volume on "The Origin of Submarine Canyons" the writer inadvertently credited to A. C. Veatch an excerpt from a submarine chart actually contoured by P. A. Smith, of the U. S. Coast and Geodetic Survey. The chart in question is Chart IVB of Special Paper No. 7 of the Geological Society of America entitled "Atlantic Submarine Valleys of the United States and the Congo Submarine Valley, by A. C. Veatch and P. A. Smith," and the excerpt appears as Plate III of the volume fist cited above. In view of the heavy labor involved in contouring the charts accompanying the paper by Veatch and Smith and the beauty of the finished product, it would be unfair to Mr. Smith to permit the error to go uncorrected. Excerpts from two other charts are correctly ascribed to Dr. Veatch. PMID:17839404

  6. In Situ Transmission Electron Microscopy And Spectroscopy Studies Of Rechargeable Batteries Under Dynamic Operating Conditions: A Retrospective And Perspective View

    SciTech Connect

    Wang, Chong M.

    2015-02-14

    Since the advent of the transmission electron microscope (TEM), continuing efforts have been made to image material under native and reaction environments that typically involve liquids, gases, and external stimuli. With the advances of aberration-corrected TEM for improving the imaging resolution, steady progress has been made on developing methodologies that allow imaging under dynamic operating conditions, or in situ TEM imaging. The success of in situ TEM imaging is closely associated with advances in microfabrication techniques that enable manipulation of nanoscale objects around the objective lens of the TEM. This paper summarizes and highlights recent progress involving in situ TEM studies of energy storage materials, especially rechargeable batteries. The paper is organized to cover both the in situ TEM techniques and the scientific discoveries made possible by in situ TEM imaging.

  7. Structural characterization of interfaces in epitaxial Fe/MgO/Fe magnetic tunnel junctions by transmission electron microscopy

    SciTech Connect

    Wang, C.; Chang, L. Y.; Choi, S.-Y.; Kirkland, A. I.; Kohn, A.; Wang, S. G.; Petford-Long, A. K.; Ward, R. C. C.

    2010-07-01

    We present a detailed structural characterization of the interfaces in Fe/MgO/Fe layers grown by molecular-beam epitaxy using aberration-corrected transmission electron microscopy (TEM), scanning TEM, and electron energy-loss spectroscopy. When fabricated into magnetic tunnel junctions, these epitaxial devices exhibit large tunnel magnetoresistance ratios (e.g., 318% at 10 K), though still considerably lower than the values predicted theoretically. The reason for this discrepancy is being debated and has been attributed to the structure of, and defects at the interface, namely, the relative position of the atoms, interface oxidation, strain, and structural asymmetry of the interfaces. In this structural study, we observed that Fe is bound to O at the interfaces. The interfaces are semicoherent and mostly sharp with a minor degree of oxidation. A comparison of the two interfaces shows that the top MgO/Fe interface is rougher.

  8. Erratum: "Utilization of the Wavefront Sensor and Short-exposure Images for Simultaneous Estimation of Quasi-static Aberration and Exoplanet Intensity" (ApJ, 767, 21)

    NASA Astrophysics Data System (ADS)

    Frazin, Richard A.

    2016-04-01

    This paper first demonstrates analytically that, at millisecond timescales, the adaptive optics system in a ground-based telescope will maintain the faint planetary emission nearly constant in time, while the speckle intensity at the planet’s location will undergo wild fluctuations. Then, it presents a method for the simultaneous determination of the image of an exo-planetary system and pupil-plane aberrations that are not corrected by the adaptive optics system (so-called “non-common path aberrations”), which cause a confounding speckle background. The central idea of the method is to take simultaneous millisecond exposures in both the wavefront sensor and science camera, and then perform statistical inference procedures to determine both the aberrations and planetary image. The statistical inference is based on a Taylor expansion of an exponential containing the aberration function. While the first order terms given in the paper are correct, it is missing some second-order terms, which are important when the aberrations are large enough so that a first order expansion is not adequate. Since the numerical experiments used small aberrations, this correction has little effect on the results.

  9. mFISH analysis of chromosome aberrations induced in vitro by α-particle radiation: examination of dose-response relationships.

    PubMed

    Curwen, Gillian B; Tawn, E Janet; Cadwell, Kevin K; Guyatt, Laura; Thompson, James; Hill, Mark A

    2012-11-01

    A multicolored FISH (mFISH) technique was used to characterize the cytogenetic damage associated with exposure to α-particle radiation with particular emphasis on the quality and quantity that is likely to be transmitted through cell division to descendant cells. Peripheral blood lymphocytes were irradiated in vitro with (238)Pu α particles with a range of mean doses up to 936 mGy and were cultured for 47 h. The dose responses for total aberrant cells, stable and unstable cells, and cells with one simple chromosome aberration and multiple chromosome aberrations were predominantly linear for doses that resulted in cell nuclei receiving a single α-particle traversal. However, there was a decrease per unit dose in aberrant cells of all types at higher doses because of cells increasingly receiving multiple traversals. The proportion of radiation-induced aberrant cells containing multiple aberrations ranged from 48 to 74% with little evidence of dose dependency. Ninety-one percent of all cells with multiple aberrations were classified as unstable. Resolving the chromosome rearrangements into simple categories resulted in a linear dose response for dicentrics of 24.9 ± 3.3 × 10(-2) per Gy. The predominant aberration in stable transmissible cells was a single translocation with a dose response for predominantly single hit cell nuclei of 4.1 ± 1.3 × 10(-2) per Gy. Thus, translocations are the most likely aberration to be observed in peripheral blood lymphocytes from individuals with incorporated α-emitting radionuclides resulting in long-term chronic exposure. PMID:23083107

  10. Patterns of Chromosomal Aberrations in Solid Tumors

    PubMed Central

    Grade, Marian; Difilippantonio, Michael J.

    2016-01-01

    Chromosomal abnormalities are a defining feature of solid tumors. Such cytogenetic alterations are mainly classified into structural chromosomal aberrations and copy number alterations, giving rise to aneuploid karyotypes. The increasing detection of these genetic changes allowed the description of specific tumor entities and the associated patterns of gene expression. In fact, tumor-specific landscapes of gross genomic copy number changes, including aneuploidies of entire chromosome arms and chromosomes result in a global deregulation of the transcriptome of cancer cells. Furthermore, the molecular characterization of cytogenetic abnormalities has provided insights into the mechanisms of tumorigenesis and has, in a few instances, led to the clinical implementation of effective diagnostic and prognostic tools, as well as treatment strategies that target a specific genetic abnormality. PMID:26376875

  11. Patterns of Chromosomal Aberrations in Solid Tumors.

    PubMed

    Grade, Marian; Difilippantonio, Michael J; Camps, Jordi

    2015-01-01

    Chromosomal abnormalities are a defining feature of solid tumors. Such cytogenetic alterations are mainly classified into structural chromosomal aberrations and copy number alterations, giving rise to aneuploid karyotypes. The increasing detection of these genetic changes allowed the description of specific tumor entities and the associated patterns of gene expression. In fact, tumor-specific landscapes of gross genomic copy number changes, including aneuploidies of entire chromosome arms and chromosomes result in a global deregulation of the transcriptome of cancer cells. Furthermore, the molecular characterization of cytogenetic abnormalities has provided insights into the mechanisms of tumorigenesis and has, in a few instances, led to the clinical implementation of effective diagnostic and prognostic tools, as well as treatment strategies that target a specific genetic abnormality. PMID:26376875

  12. Overlapped Fourier coding for optical aberration removal

    PubMed Central

    Horstmeyer, Roarke; Ou, Xiaoze; Chung, Jaebum; Zheng, Guoan; Yang, Changhuei

    2014-01-01

    We present an imaging procedure that simultaneously optimizes a camera’s resolution and retrieves a sample’s phase over a sequence of snapshots. The technique, termed overlapped Fourier coding (OFC), first digitally pans a small aperture across a camera’s pupil plane with a spatial light modulator. At each aperture location, a unique image is acquired. The OFC algorithm then fuses these low-resolution images into a full-resolution estimate of the complex optical field incident upon the detector. Simultaneously, the algorithm utilizes redundancies within the acquired dataset to computationally estimate and remove unknown optical aberrations and system misalignments via simulated annealing. The result is an imaging system that can computationally overcome its optical imperfections to offer enhanced resolution, at the expense of taking multiple snapshots over time. PMID:25321982

  13. Chromosomal aberrations in lymphocytes from car painters.

    PubMed

    Silva, J M; Santos-Mello, R

    1996-05-01

    In the present paper we report the results of biological monitoring of a group of 25 car painters working in different automobile shops in Brasília. There was a significantly higher frequency of aneuplodies and chromosome deletions in the peripheral lymphocytes of car painters than in control subjects. We also detected a significant correlation between the time worked as a car painter and the frequency of aneuploidy. Smoking habits do not represent a significant factor in terms of production of the various types of chromosome aberrations among car painters. These results permitted us to conclude that the individuals studied represent a risk group and should be medically followed up with judicious periodic examinations. PMID:8637507

  14. Submicrometer Pattern Correction For Optical Lithography

    NASA Astrophysics Data System (ADS)

    Ito, Tetsuo; Kadota, Kazuya; Fukui, Hiroshi; Nagao, Masaki; Sugimoto, Aritoshi; Nozaki, Masahiro; Kato, Takeshi

    1988-01-01

    To realize higher CD controls of submicrometer devices, the submicrometer pattern corrections were investigated in optical reduction steppers considering the primary residual aberrations. The optical pattern fidelities on the reduction pattern transfer were estimated at first using the three-dimensional photoresist image simulator RESPROT (Resist Process Three-Dimensional Simulator), which is examined the Seidel's primary aberrations, i.e. spherical aberration, astigmatism, field curvature, distortion and coma. From RESPROT calculations it was known that astigmatism affects pattern shape depending on image height, coma and distortion make position shifts in exposure field, and image contrast is influenced by field curvature. These results were reflected to device design rules, process latitude enhancements and lens manufacturings. To use premature high NA g-line lenses and minimize the diffraction limit for submicrometer area, reticle pattern corrections are very useful for sub-space patterns writing in contact holes, "tailoring" of W/L for MOS-gate patterns, and sub-field position control for distortion correction on ER writing. For almost of this investigation, 5-10nm order corrections were required from original design on wafer. In order to make good use of higher NA lenses, focus latitude enhancement are required because field curvature control is very severe. For these demand, multi-step superpositions of focus and exposure, FLEX -method, is useful to enhance the depth of focus effectively. These simulated and examined results are covenient to realize submicrometer devices on advantageous optical lithography using more shorter wavelength, i.e. i-line or excirner laser steppers.

  15. The vector behavior of aberrations in high numerical aperture (0.9 < NA < 3.1) laser focusing systems

    NASA Astrophysics Data System (ADS)

    Jo, Sseunhyeun

    This dissertation investigates vector behavior of aberrations for high numerical aperture optical systems using a solid immersion lens (SIL). In order to analyze the system, this dissertation introduces the illumination system transfer function (ISTF), which is a map in the space of the exit pupil that shows reflection and transmission properties of individual plane waves that are emitted from corresponding points in the exit pupil. A vector analysis using ISTF presents the role of propagating and evanescent energy in the SIL systems, where the boundary between the them is defined by total internal reflection. The behavior of third-order aberrations such as coma and astigmatism, are dramatically affected by polarization in high NA systems. The irradiance distribution exhibits significantly different characteristics, depending on how coma or astigmatism is aligned with the incident linear polarized light. Vector effects including diffraction, polarization, and aberration, are used to analyze tolerances along with a comparison to geometrical optics. Apodization in amplitude and phase of the angular spectrum is generated in high NA focusing systems due to the difference in vector transmission and reflection for each plane wave. The size of the incident gaussian beam is effectively reduced at the exit pupil by the amplitude apodization and causes a spot size increase in image space. The apodization in phase is called gap-induced aberration due to its dependence on the air gap. The gap- induced aberration does not come from lens surface imperfection, and it exhibits multiple orders of spherical aberration and astigmatism. The apodization in amplitude and phase is well characterized by separable supergaussian functions, where each function depends on the refractive index of the SIL n SIL and the air gap height h. The best defocus, based on characteristics of gap-induced aberration, is suggested to be a good compensator only for low nSIL and h. The system performance, as

  16. Congenital Aberrant Tearing: A Re-Look

    PubMed Central

    Miller, Marilyn T.; Strömland, Kerstin; Ventura, Liana

    2008-01-01

    Purpose Congenital aberrant tearing is characterized by tearing when eating (“crocodile tears”), lack of emotional tearing, or both. Most reported cases are associated with Duane syndrome. In our previous studies we observed aberrant tearing in individuals with thalidomide embryopathy and Möbius sequence. This report summarizes the literature on the subject and adds 3 new studies that give information on this unusual condition. Methods Twenty-eight individuals with Möbius sequence were interviewed about tearing symptoms at a support group meeting in Italy. In Sweden 30 adults primarily from the original thalidomide series were reexamined. In this latter study, a Schirmer test was done at baseline and repeated 5 minutes after eating. Twenty families in Brazil who have children with Möbius sequence were questioned about tearing symptoms and exposure to misoprostol during pregnancy. Results In the 28 Italian individuals, either “crocodile tears” or lack of emotional tearing was noted in 7 cases. In the thalidomide study, 10 of 30 patients had tearing when eating and 7 had no emotional tearing. Low Schirmer scores or increased tearing after eating was noted in a few asymptomatic individuals. Among the 20 Brazilian children with Möbius sequence, 10 had some tearing abnormality. Conclusion Congenital anomalous lacrimation is rare but usually associated with Duane syndrome or abduction deficits, as in Möbius sequence and, less frequently, facial nerve palsy. Studies implicate an early insult in development at 4 to 6 weeks. At that time the facial nerve, sixth nerve, and lacrimal nucleus are in close proximity in the embryo. PMID:19277226

  17. Licklider Transmission Protocol Implementation

    NASA Technical Reports Server (NTRS)

    Burleigh, Scott C.; Krupiarz, Chris

    2011-01-01

    This software is an implementation of the Licklider Transmission Protocol (LTP), a communications protocol intended to support the Bundle Protocol in Delay-Tolerant Network (DTN) operations. LTP is designed to provide retransmission-based reliability over links characterized by extremely long message round-trip times and/or frequent interruptions in connectivity. Communication in interplanetary space is the most prominent example of this sort of environment, and LTP is principally aimed at supporting long-haul reliable transmission over deep-space RF links. Like any reliable transport service employing ARQ (Automatic Repeat re-Quests), LTP is stateful. In order to assure the reception of a block of data it has sent, LTP must retain for possible retransmission all portions of that block which might not have been received yet. In order to do so, it must keep track of which portions of the block are known to have been received so far, and which are not, together with any additional information needed for purposes of retransmitting part, or all, of the block. Long round-trip times mean substantial delay between the transmission of a block of data and the reception of an acknowledgement from the block s destination, signaling arrival of the block. If LTP postponed transmission of additional blocks of data until it received acknowledgement of the arrival of all prior blocks, valuable opportunities to use what little deep space transmission bandwidth is available would be forever lost. For this reason, LTP is based in part on a notion of massive state retention. Any number of requested transmission conversations (sessions) may be concurrently in flight at various displacements along the link between two LTP engines, and the LTP engines must necessarily retain transmission status and retransmission resources for all of them. Moreover, if any of the data of a given block are lost en route, it will be necessary to retain the state of that transmission during an additional

  18. Using nodal aberration theory to understand the aberrations of multiple unobscured three mirror anastigmatic (TMA) telescopes

    NASA Astrophysics Data System (ADS)

    Thompson, Kevin P.; Fuerschbach, Kyle; Schmid, Tobias; Rolland, Jannick P.

    2009-08-01

    The alignment of three mirror anastigmatic (TMA) telescopes has been studied since their invention in the 60s. Recently, Thompson et al.1 reported that other than the conventional uniform coma over the field caused by misalignment, TMA telescopes display only one other misalignment induced aberration, field-asymmetric, field-linear astigmatism. Currently, an instrument with three TMAs is under development as the primary spectrometer on the James Webb Space Telescope. This paper will report on the application of Nodal Aberration Theory (NAT) to understanding the optical design of an optical system with multiple TMAs as a first step towards investigating and potentially independently analyzing the sensitivities to alignment of this key instrument.

  19. Eye-tracking technology for real-time monitoring of transverse chromatic aberration.

    PubMed

    Privitera, Claudio M; Sabesan, Ramkumar; Winter, Simon; Tiruveedhula, Pavan; Roorda, Austin

    2016-04-15

    Objective measurements of transverse chromatic aberration (TCA) between two or more wavelengths with an adaptive optics scanning laser ophthalmoscope (AOSLO) are very accurate, but frequent measurements are impractical in many experimental settings. Here, we demonstrate a pupil tracker that can accurately measure relative changes in TCA that are caused by small shifts in the pupil relative to the AOSLO imaging beam. Corrections for TCA caused by these shifts improve the measurement of TCA as a function of eccentricity, revealing a strong linear relationship. We propose that pupil tracking be integrated into AOSLO systems, where robust and unobtrusive control of TCA is required. PMID:27082330

  20. Optical aberrations and alignment of the eye with age.

    PubMed

    Berrio, Esther; Tabernero, Juan; Artal, Pablo

    2010-01-01

    We explored the relative changes in ocular, corneal, and internal aberrations associated with normal aging with special emphasis in the role of ocular alignment and lens shape factor in the balance of aberrations. Ocular and corneal aberrations together with the angle kappa were measured for a 5-mm pupil diameter in 46 eyes with low refractive errors and ages ranging between 20 and 77 years. The root mean square (RMS) of the higher order ocular and corneal aberrations increased with age at a rate of 0.0032 μm/year and 0.0015 μm/year, respectively. While in young eyes the partial compensation of aberrations by the internal surfaces was clear, no significant difference was found between corneal and ocular RMS in the older group. The ocular spherical aberration (0.0011 μm/year) and horizontal coma (0.0017 μm/year) increased moderately with age. This is not due to changes in the optical alignment, since angle kappa did not vary significantly with age. Age-related variations in the radii of curvature of the crystalline lens modify slightly its shape factor, reducing the compensation of lateral coma. This suggests that geometrical changes in the crystalline lens with age contribute to modify its aberration structure, reducing the compensation mechanism and explaining most of the measured increment of ocular aberrations with age. PMID:21196516

  1. Modified Matching Ronchi Test to Visualize Lens Aberrations

    ERIC Educational Resources Information Center

    Hassani, Kh; Ziafi, H. Hooshmand

    2011-01-01

    We introduce a modification to the matching Ronchi test to visualize lens aberrations with simple and inexpensive equipment available in educational optics labs. This method can help instructors and students to observe and estimate lens aberrations in real time. It is also a semi-quantitative tool for primary tests in research labs. In this work…

  2. Optical aberrations measurement with a low cost optometric instrument

    NASA Astrophysics Data System (ADS)

    Furlan, Walter D.; Muñoz-Escrivá, L.; Pons, A.; Martínez-Corral, M.

    2002-08-01

    A simple experimental method for measuring optical aberrations of a single lens is proposed. The technique is based on the use of an optometric instrument employed for the assessment of the refractive state of the eye: the retinoscope. Experimental results for spherical aberration and astigmatism are obtained.

  3. Using Brief Assessments to Evaluate Aberrant Behavior Maintained by Attention.

    ERIC Educational Resources Information Center

    O'Reilly, Mark F.; Lancioni, Giulio E.; King, Lisa; Lally, Grainne; Dhomhnaill, Orla Nic

    2000-01-01

    Functional assessments were conducted for two Irish individuals with severe disabilities and aberrant behavior. A modified attention condition was introduced, which involved both parents interacting with a third person. Aberrant behavior occurred only in the modified attention condition. Successful treatment consisted of delivery of attention on a…

  4. Aberration analysis calculations for synchrotron radiation beamline design

    SciTech Connect

    McKinney, W.R.; Howells, M.; Padmore, H.A.

    1997-09-01

    The application of ray deviation calculations based on aberration coefficients for a single optical surface for the design of beamline optical systems is reviewed. A systematic development is presented which allows insight into which aberration may be causing the rays to deviate from perfect focus. A new development allowing analytical calculation of line shape is presented.

  5. Aberrant regeneration in idiopathic oculomotor nerve palsy: case report.

    PubMed

    Laguna, J F; Smith, M S

    1980-06-01

    Aberrant regeneration of the oculomotor nerve usually follows injury to the nerve by posterior communicating arty aneurysms or trauma. A case of idiopathic third nerve palsy with pupillary involvement occurred in an otherwise healthy 38-year-old man. Follow-up examination 32 months later showed evidence of oculomotor function with aberrant regeneration. PMID:7381547

  6. Rotorcraft transmission

    NASA Technical Reports Server (NTRS)

    Coy, John J.

    1987-01-01

    The NASA Lewis Research Center and the U.S. Army Aviation Systems Command share an interest in advancing the technology for helicopter propulsion systems. In particular, this presentation outlines that portion of the program that applies to the drive train and its various mechanical components. The major goals of the program are to increase the life, reliability, and maintainability; reduce the weight, noise, and vibration; and maintain the relatively high mechanical efficiency of the gear train. The current activity emphasizes noise reduction technology and analytical code development followed by experimental verification. Selected significant advances in technology for transmissions are reviewed, including advanced configurations and new analytical tools. Finally, the plan for transmission research in the future is presented.

  7. Three-dimensional motion correction using speckle and phase for in vivo computed optical interferometric tomography

    PubMed Central

    Shemonski, Nathan D.; Ahn, Shawn S.; Liu, Yuan-Zhi; South, Fredrick A.; Carney, P. Scott; Boppart, Stephen A.

    2014-01-01

    Over the years, many computed optical interferometric techniques have been developed to perform high-resolution volumetric tomography. By utilizing the phase and amplitude information provided with interferometric detection, post-acquisition corrections for defocus and optical aberrations can be performed. The introduction of the phase, though, can dramatically increase the sensitivity to motion (most prominently along the optical axis). In this paper, we present two algorithms which, together, can correct for motion in all three dimensions with enough accuracy for defocus and aberration correction in computed optical interferometric tomography. The first algorithm utilizes phase differences within the acquired data to correct for motion along the optical axis. The second algorithm utilizes the addition of a speckle tracking system using temporally- and spatially-coherent illumination to measure motion orthogonal to the optical axis. The use of coherent illumination allows for high-contrast speckle patterns even when imaging apparently uniform samples or when highly aberrated beams cannot be avoided. PMID:25574426

  8. Characterising a holographic modal phase mask for the detection of ocular aberrations

    NASA Astrophysics Data System (ADS)

    Corbett, A. D.; Leyva, D. Gil; Diaz-Santana, L.; Wilkinson, T. D.; Zhong, J. J.

    2005-12-01

    The accurate measurement of the double-pass ocular wave front has been shown to have a broad range of applications from LASIK surgery to adaptively corrected retinal imaging. The ocular wave front can be accurately described by a small number of Zernike circle polynomials. The modal wave front sensor was first proposed by Neil et al. and allows the coefficients of the individual Zernike modes to be measured directly. Typically the aberrations measured with the modal sensor are smaller than those seen in the ocular wave front. In this work, we investigated a technique for adapting a modal phase mask for the sensing of the ocular wave front. This involved extending the dynamic range of the sensor by increasing the pinhole size to 2.4mm and optimising the mask bias to 0.75λ. This was found to decrease the RMS error by up to a factor of three for eye-like aberrations with amplitudes up to 0.2μm. For aberrations taken from a sample of real-eye measurements a 20% decrease in the RMS error was observed.

  9. Exoplanet detection with simultaneous spectral differential imaging: effects of out-of-pupil-plane optical aberrations

    SciTech Connect

    Marois, C; Phillion, D W; Macintosh, B

    2006-05-02

    Imaging faint companions (exoplanets and brown dwarfs) around nearby stars is currently limited by speckle noise. To efficiently attenuate this noise, a technique called simultaneous spectral differential imaging (SSDI) can be used. This technique consists of acquiring simultaneously images of the field of view in several adjacent narrow bands and in combining these images to suppress speckles. Simulations predict that SSDI can achieve, with the acquisition of three wavelengths, speckle noise attenuation of several thousands. These simulations are usually performed using the Fraunhofer approximation, i.e. considering that all aberrations are located in the pupil plane. We have performed wavefront propagation simulations to evaluate how out-of-pupil-plane aberrations affect SSDI speckle noise attenuation performance. The Talbot formalism is used to give a physical insight of the problem; results are confirmed using a proper wavefront propagation algorithm. We will show that near-focal-plane aberrations can significantly reduce SSDI speckle noise attenuation performance at several {lambda}/D separation. It is also shown that the Talbot effect correctly predicts the PSF chromaticity. Both differential atmospheric refraction effects and the use of a coronagraph will be discussed.

  10. Surgical and healing changes to ocular aberrations following refractive surgery

    NASA Astrophysics Data System (ADS)

    Straub, Jochen; Schwiegerling, Jim

    2003-07-01

    Purpose: To measure ocular aberrations before and at several time periods after LASIK surgery to determine the change to the aberration structure of the eye. Methods: A Shack-Hartmann wavefront sensor was used to measure 88 LASIK patients pre-operatively and at 1 week and 12 months following surgery. Reconstructed wavefront errors are compared to look at induced differences. Manifest refraction was measured at 1 week, 1 month, 3 months, 6 months and 12 months following surgery. Sphere, cylinder, spherical aberration, and pupil diameter are analyzed. Results: A dramatic elevation in spherical aberration is seen following surgery. This elevation appears almost immediately and remains for the duration of the study. A temporary increase in pupil size is seen following surgery. Conclusions: LASIK surgery dramatically reduces defocus and astigmatism in the eye, but simultaneously increases spherical aberration levels. This increase occurs at the time of surgery and is not an effect of the healing response.

  11. Chaos in ocular aberration dynamics of the human eye

    PubMed Central

    Hampson, Karen M.; Mallen, Edward A. H.

    2012-01-01

    Since the characterization of the eye’s monochromatic aberration fluctuations in 2001, the power spectrum has remained the most widely used method for analyzing their dynamics. However, the power spectrum does not capture the complexities of the fluctuations. We measured the monochromatic aberration dynamics of six subjects using a Shack-Hartmann sensor sampling at 21 Hz. We characterized the dynamics using techniques from chaos theory. We found that the attractor embedding dimension for all aberrations, for all subjects, was equal to three. The embedding lag averaged across aberrations and subjects was 0.31 ± 0.07 s. The Lyapunov exponent of the rms wavefront error was positive for each subject, with an average value of 0.44 ± 0.15 µm/s. This indicates that the aberration dynamics are chaotic. Implications for future modeling are discussed. PMID:22567581

  12. The effect of dopamine agonists on adaptive and aberrant salience in Parkinson's disease.

    PubMed

    Nagy, Helga; Levy-Gigi, Einat; Somlai, Zsuzsanna; Takáts, Annamária; Bereczki, Dániel; Kéri, Szabolcs

    2012-03-01

    Clinical evidence suggests that after initiation of dopaminergic medications some patients with Parkinson's disease (PD) develop psychotic symptoms, such as hallucinations and delusions. Here, we tested the hypothesis that the neurocognitive basis of this phenomenon can be defined as the formation of arbitrary and illusory associations between conditioned stimuli and reward signals, called aberrant salience. Young, never-medicated PD patients and matched controls were assessed on a speeded reaction time task in which the probe stimulus was preceded by conditioned stimuli that could signal monetary reward by color or shape. The patients and controls were re-evaluated after 12 weeks during which the patients received a dopamine agonist (pramipexole or ropinirole). Results indicated that dopamine agonists increased both adaptive and aberrant salience in PD patients, that is, formation of real and illusory associations between conditioned stimuli and reward, respectively. This effect was present when associations were assessed by means of faster responding after conditioned stimuli signaling reward (implicit salience) and overt rating of stimulus-reward links (explicit salience). However, unusual feelings and experiences, which are subclinical manifestations of psychotic-like symptoms, were specifically related to irrelevant and illusory stimulus-reward associations (aberrant salience) in PD patients receiving dopamine agonists. The learning of relevant and real stimulus-reward associations (adaptive salience) was not related to unusual experiences. These results suggest that dopamine agonists may increase psychotic-like experiences in young patients with PD, possibly by facilitating dopaminergic transmission in the ventral striatum, which results in aberrant associations between conditioned stimuli and reward. PMID:22089321

  13. The Effect of Dopamine Agonists on Adaptive and Aberrant Salience in Parkinson's Disease

    PubMed Central

    Nagy, Helga; Levy-Gigi, Einat; Somlai, Zsuzsanna; Takáts, Annamária; Bereczki, Dániel; Kéri, Szabolcs

    2012-01-01

    Clinical evidence suggests that after initiation of dopaminergic medications some patients with Parkinson's disease (PD) develop psychotic symptoms, such as hallucinations and delusions. Here, we tested the hypothesis that the neurocognitive basis of this phenomenon can be defined as the formation of arbitrary and illusory associations between conditioned stimuli and reward signals, called aberrant salience. Young, never-medicated PD patients and matched controls were assessed on a speeded reaction time task in which the probe stimulus was preceded by conditioned stimuli that could signal monetary reward by color or shape. The patients and controls were re-evaluated after 12 weeks during which the patients received a dopamine agonist (pramipexole or ropinirole). Results indicated that dopamine agonists increased both adaptive and aberrant salience in PD patients, that is, formation of real and illusory associations between conditioned stimuli and reward, respectively. This effect was present when associations were assessed by means of faster responding after conditioned stimuli signaling reward (implicit salience) and overt rating of stimulus–reward links (explicit salience). However, unusual feelings and experiences, which are subclinical manifestations of psychotic-like symptoms, were specifically related to irrelevant and illusory stimulus–reward associations (aberrant salience) in PD patients receiving dopamine agonists. The learning of relevant and real stimulus–reward associations (adaptive salience) was not related to unusual experiences. These results suggest that dopamine agonists may increase psychotic-like experiences in young patients with PD, possibly by facilitating dopaminergic transmission in the ventral striatum, which results in aberrant associations between conditioned stimuli and reward. PMID:22089321

  14. Track structure based modelling of chromosome aberrations after photon and alpha-particle irradiation.

    PubMed

    Friedland, Werner; Kundrát, Pavel

    2013-08-30

    A computational model of radiation-induced chromosome aberrations in human cells within the PARTRAC Monte Carlo simulation framework is presented. The model starts from radiation-induced DNA damage assessed by overlapping radiation track structures with multi-scale DNA and chromatin models, ranging from DNA double-helix in atomic resolution to chromatin fibre loops, heterochromatic and euchromatic regions, and chromosome territories. The repair of DNA double-strand breaks via non-homologous end-joining is followed. Initial spatial distribution and complexity, diffusive motion, enzymatic processing, synapsis and ligation of individual DNA ends from the breaks are simulated. To enable scoring of different chromosome aberration types resulting from improper joining of DNA fragments, the repair module has been complemented by tracking the chromosome origin of the ligated fragments and the positions of centromeres. The modelled motion of DNA ends has sub-diffusive characteristics and corresponds to measured chromatin mobility within time-scales of a few hours. The calculated formation of dicentrics after photon and α-particle irradiation in human fibroblasts is compared to experimental data (Cornforth et al., 2002, Radiat Res 158, 43). The predicted yields of dicentrics overestimate the measurements by factors of five for γ-rays and two for α-particle irradiation. Nevertheless, the observed relative dependence on radiation dose is correctly reproduced. Calculated yields and size distributions of other aberration types are discussed. The present work represents a first mechanistic approach to chromosome aberrations and their kinetics, combining full track structure simulations with detailed models of chromatin and accounting for the kinetics of DNA repair. PMID:23811166

  15. Aberrant light directly impairs mood and learning through melanopsin-expressing neurons.

    PubMed

    LeGates, Tara A; Altimus, Cara M; Wang, Hui; Lee, Hey-Kyoung; Yang, Sunggu; Zhao, Haiqing; Kirkwood, Alfredo; Weber, E Todd; Hattar, Samer

    2012-11-22

    The daily solar cycle allows organisms to synchronize their circadian rhythms and sleep-wake cycles to the correct temporal niche. Changes in day-length, shift-work, and transmeridian travel lead to mood alterations and cognitive function deficits. Sleep deprivation and circadian disruption underlie mood and cognitive disorders associated with irregular light schedules. Whether irregular light schedules directly affect mood and cognitive functions in the context of normal sleep and circadian rhythms remains unclear. Here we show, using an aberrant light cycle that neither changes the amount and architecture of sleep nor causes changes in the circadian timing system, that light directly regulates mood-related behaviours and cognitive functions in mice. Animals exposed to the aberrant light cycle maintain daily corticosterone rhythms, but the overall levels of corticosterone are increased. Despite normal circadian and sleep structures, these animals show increased depression-like behaviours and impaired hippocampal long-term potentiation and learning. Administration of the antidepressant drugs fluoxetine or desipramine restores learning in mice exposed to the aberrant light cycle, suggesting that the mood deficit precedes the learning impairments. To determine the retinal circuits underlying this impairment of mood and learning, we examined the behavioural consequences of this light cycle in animals that lack intrinsically photosensitive retinal ganglion cells. In these animals, the aberrant light cycle does not impair mood and learning, despite the presence of the conventional retinal ganglion cells and the ability of these animals to detect light for image formation. These findings demonstrate the ability of light to influence cognitive and mood functions directly through intrinsically photosensitive retinal ganglion cells. PMID:23151476

  16. Optimization of image-based aberration metrology for EUV lithography

    NASA Astrophysics Data System (ADS)

    Levinson, Zac; Fenger, Germain; Burbine, Andrew; Schepis, Anthony R.; Smith, Bruce W.

    2014-04-01

    EUV lithography is likely more sensitive to drift from thermal and degradation effects than optical counterparts. We have developed an automated approach to photoresist image-based aberration metrology. The approach uses binary or phase mask targets and iterative simulation based solutions to retrieve an aberrated pupil function. It is well known that a partially coherent source both allows for the diffraction information of smaller features to be collected by the condenser system, and introduces pupil averaging. In general, smaller features are more sensitive to aberrations than larger features, so there is a trade-off between target sensitivity and printability. Therefore, metrology targets using this technique must be optimized for maximum sensitivity with each illumination system. This study examines aberration metrology target optimization and suggests an optimization scheme for use with any source. Interrogation of both low and high order aberrations is considered. High order aberration terms are interrogated using two separate fitting algorithms. While the optimized targets do show the lowest RMS error under the test conditions, a desirable RMS error is not achieved by either high order interrogation scheme. The implementation of a previously developed algorithm for image-based aberration metrology is used to support this work.

  17. Gene aberrations for precision medicine against lung adenocarcinoma.

    PubMed

    Saito, Motonobu; Shiraishi, Kouya; Kunitoh, Hideo; Takenoshita, Seiichi; Yokota, Jun; Kohno, Takashi

    2016-06-01

    Lung adenocarcinoma (LADC), the most frequent histological type of lung cancer, is often triggered by an aberration in a driver oncogene in tumor cells. Examples of such aberrations are EGFR mutation and ALK fusion. Lung adenocarcinoma harboring such mutations can be treated with anticancer drugs that target the aberrant gene products. Additional oncogene aberrations, including RET, ROS1, and NRG1 fusions, skipping of exon 14 of MET, and mutations in BRAF, HER2, NF1, and MEK1, were recently added to the list of such "druggable" driver oncogene aberrations, and their responses to targeted therapies are currently being evaluated in clinical trials. However, approximately 30% and 50% of LADCs in patients in Japan and Europe/USA, respectively, lack the driver oncogene aberrations listed above. Therefore, novel therapeutic strategies, such as those that exploit the vulnerabilities of cancer cells with non-oncogene aberrations, are urgently required. This review summarizes the current status of research on precision medicine against LADC and enumerates the research priorities for the near future. PMID:27027665

  18. Aberrant expression of hormone receptors in adrenal Cushing's syndrome.

    PubMed

    Christopoulos, Stavroula; Bourdeau, Isabelle; Lacroix, André

    2004-01-01

    In recent years, a novel understanding of the pathophysiology of adrenal Cushing's syndrome has emerged. The ectopic or aberrant expression of G-protein-coupled hormone receptors in the adrenal cortex was found to play a central role in the regulation of cortisol secretion in ACTH-independent macronodular adrenal hyperplasia (AIMAH) and in some unilateral adrenal adenomas. Various aberrant receptors, functionally coupled to steroidogenesis, have been reported: GIP, vasopressin, beta-adrenergic, LH/hCG, and serotonin receptors have been best characterized, but angiotensin, leptin, glucagon, IL-1 and TSH receptors have also been described. The molecular mechanisms responsible for the aberrant expression of these receptors are currently unknown. One or many of these aberrant receptors are present in most cases of AIMAH and in some cases of adrenal adenomas with overt or sub-clinical secretion of cortisol. Clinical protocols to screen for such aberrant receptors have been developed and should be performed in all patients with AIMAH. The identification of such aberrant regulation of steroidogenesis in AIMAH provides the novel opportunity to treat some of these patients with pharmacological agents that either suppress the endogenous ligand or block the aberrant receptor, thus avoiding bilateral adrenalectomy. PMID:16010457

  19. The Mechanisms of Aberrant Protein Aggregation

    NASA Astrophysics Data System (ADS)

    Cohen, Samuel; Vendruscolo, Michele; Dobson, Chris; Knowles, Tuomas

    2012-02-01

    We discuss the development of a kinetic theory for understanding the aberrant loss of solubility of proteins. The failure to maintain protein solubility results often in the assembly of organized linear structures, commonly known as amyloid fibrils, the formation of which is associated with over 50 clinical disorders including Alzheimer's and Parkinson's diseases. A true microscopic understanding of the mechanisms that drive these aggregation processes has proved difficult to achieve. To address this challenge, we apply the methodologies of chemical kinetics to the biomolecular self-assembly pathways related to protein aggregation. We discuss the relevant master equation and analytical approaches to studying it. In particular, we derive the underlying rate laws in closed-form using a self-consistent solution scheme; the solutions that we obtain reveal scaling behaviors that are very generally present in systems of growing linear aggregates, and, moreover, provide a general route through which to relate experimental measurements to mechanistic information. We conclude by outlining a study of the aggregation of the Alzheimer's amyloid-beta peptide. The study identifies the dominant microscopic mechanism of aggregation and reveals previously unidentified therapeutic strategies.

  20. Aberrant Glycosylation in the Human Trabecular Meshwork

    PubMed Central

    Sienkiewicz, Adam E.; Rosenberg, Brandon N.; Edwards, Genea; Carreon, Teresia A.; Bhattacharya, Sanjoy K.

    2014-01-01

    Purpose To determine the difference in protein glycosylation and glycosylation enzyme levels between glaucomatous and control trabecular meshwork (TM). Experimental design Glaucomatous and normal donor (n=12 each) TM tissues, Lectin-fluorescence, fluorophore assisted carbohydrate analyses, and quantitative mass spectrometry were used to determine the glycosylation levels. Primary TM cells and glycosylation inhibitors were used to determine their effect on cell shape and motility. Results In contrast to elevated levels of glycoproteins determined by lectin-fluorescence, simultaneous hyper and hypo-glycosylation in glaucomatous trabecular meshwork was revealed by fluorophore assisted carbohydrate analyses. Analyses of enzymes showed elevation of Beta-glycosidase 1 and decrease in Galactosyltransferase family 6 domain containing protein 1 in the glaucomatous trabecular meshwork. Quantitative mass spectrometry identified select protein level changes between glaucomatous and normal trabecular meshwork. Primary trabecular meshwork cells were treated with inhibitors to elicit hypo-glycosylation, which affected cell shape, motility, and fluorescent tracer transport across a layer of trabecular meshwork cells. Conclusions and clinical relevance Global protein glycosylation is aberrant in glaucomatous trabecular meshwork compared to controls. The results presented here suggest that the alteration in global TM protein glycosylation encompassing cellular and extracellular matrix proteins contributes to glaucoma pathology likely mediated through changes in properties of TM cells. PMID:24458570

  1. Vented transmission

    SciTech Connect

    Nguyen, T.H.

    1990-01-29

    This patent describes a vented transmission. It comprises: a housing; a rotary input to the housing; a rotary output from the housing; transmission means within the housing interconnecting the input and the output and including a hollow, rotary shaft journaled within the housing; a vent tube having a first end extending into one end of the hollow shaft and a second end in fluid communication with the exterior of the housing; a shoulder within the hollow shaft and intermediate the ends of the vent tube and defining of relatively smaller diameter section near the first end of the vent tube that is within the hollow shaft and a relatively large diameter section nearer the second end of the vent tube; at least one aperture extending through the hollow shaft from the large diameter section immediately adjacent the shoulder; and a labyrinth seal at the interface of the vent tube and the large diameter section at a location between the aperture (s) and the second end of the vent tube.

  2. Aberrant adenosine A2A receptor signaling contributes to neurodegeneration and cognitive impairments in a mouse model of synucleinopathy.

    PubMed

    Hu, Qidi; Ren, Xiangpeng; Liu, Ya; Li, Zhihui; Zhang, Liping; Chen, Xingjun; He, Chaoxiang; Chen, Jiang-Fan

    2016-09-01

    Synucleinopathy is characterized by abnormal accumulation of misfolded α-synuclein (α-Syn)-positive cytoplasmic inclusions and by neurodegeneration and cognitive impairments, but the pathogenesis mechanism of synucleinopathy remains to be defined. Using a transmission model of synucleinopathy by intracerebral injection of preformed A53T α-Syn fibrils, we investigated whether aberrant adenosine A2A receptor (A2AR) signaling contributed to pathogenesis of synucleinopathy. We demonstrated that intra-hippocampal injection of preformed mutant α-Syn fibrils triggered a striking and selective induction of A2AR expression which was closely co-localized with pSer129 α-Syn-rich inclusions in neurons and glial cells of hippocampus. Importantly, by abolishing aberrant A2AR signaling triggered by mutant α-Syn, genetic deletion of A2ARs blunted a cascade of pathological events leading to synucleinopathy, including pSer129 α-Syn-rich and p62-positive aggregates, NF-κB activation and astrogliosis, apoptotic neuronal cell death and working memory deficits without affecting motor activity. These findings define α-Syn-triggered aberrant A2AR signaling as a critical pathogenesis mechanism of synucleinopathy with dual controls of cognition and neurodegeneration by modulating α-Syn aggregates. Thus, aberrant A2AR signaling represents a useful biomarker as well as a therapeutic target of synucleinopathy. PMID:27342081

  3. Subwavelength-grating-induced wavefront aberrations: a case study

    NASA Astrophysics Data System (ADS)

    Crabtree, Karlton; Chipman, Russell A.

    2007-01-01

    The on-axis wavefront aberrations of a one-dimensional sub-wavelength grating anti-reflection coating on a f/1.7 lens surface is dominated by defocus, astigmatism, and piston. The astigmatism is 0.02 waves and the magnitude of the piston approaches 1 wave peak-to-valley. The difference in aberrations between orthogonally polarized wavefronts, or the retardance aberration, shows 0.01 waves of astigmatism like variation and more than 0.01 waves of retardance induced defocus like variation.

  4. Differential algebraic method for aberration analysis of typical electrostatic lenses.

    PubMed

    Liu, Zhixiong

    2006-02-01

    In this paper up to fifth-order geometric and third-order chromatic aberration coefficients of typical electrostatic lenses are calculated by means of the charged particle optics code, COSY INFINITY, based on the differential algebraic (DA) method. A two-tube immersion lens and a symmetric einzel lens have been chosen as two examples, whose axial potential distributions are numerically calculated by a FORTRAN program using the finite difference method. The DA results are in good agreement with those evaluated by the aberration integrals in electron optics. The DA method presented here can easily be extended to aberration analysis of other numerically computed electron lenses, including magnetic lenses. PMID:16125845

  5. Polyvinylidene fluoride molecules in nanofibers, imaged at atomic scale by aberration corrected electron microscopy

    NASA Astrophysics Data System (ADS)

    Reneker, Darrell; Gorse, Joseph; Lolla, Dinesh; Kisielowski, Christian; Miao, Jiayuan; Taylor, Philip; Chase, George

    Atomic scale features of polyvinylidene fluoride molecules (PVDF) were observed. Electron micrographs of thin, self-supporting PVDF nanofibers showed conformations and relative locations of atoms in segments of polymer molecules. Rows of CF2 atomic groups, at 0.25 nm intervals, marked the paths of segments of the PVDF molecules. The fact that an electron microscope image of a segment of a PVDF molecule depended upon the particular azimuthal direction, along which the segment was viewed, enabled observation of twist around the molecular axis. The 0.2 nm side-by-side distance between the two fluorine atoms attached to the same carbon atom was clearly resolved. Morphological and chemical changes produced by energetic electrons, ranging from no change to fiber scission, over many orders of magnitude of electrons per unit area, provide quantitative new insights into radiation chemistry. Relative movements of segments of molecules were observed. Synergism between high resolution electron micrographs and images created by molecular dynamic modeling was demonstrated. This paper is at the threshold of growing usefulness of electron microscopy to the science and engineering of polymer and other molecules. Support from Coalescence Filtration Nanofiber Consortium and from the Office of Basic Energy Sciences Contract No. DE-AC02-05CH11231.

  6. High Speed, Radiation Hard CMOS Pixel Sensors for Transmission Electron Microscopy

    NASA Astrophysics Data System (ADS)

    Contarato, Devis; Denes, Peter; Doering, Dionisio; Joseph, John; Krieger, Brad

    CMOS monolithic active pixel sensors are currently being established as the technology of choice for new generation digital imaging systems in Transmission Electron Microscopy (TEM). A careful sensor design that couples μm-level pixel pitches with high frame rate readout and radiation hardness to very high electron doses enables the fabrication of direct electron detectors that are quickly revolutionizing high-resolution TEM imaging in material science and molecular biology. This paper will review the principal characteristics of this novel technology and its advantages over conventional, optically-coupled cameras, and retrace the sensor development driven by the Transmission Electron Aberration corrected Microscope (TEAM) project at the LBNL National Center for Electron Microscopy (NCEM), illustrating in particular the imaging capabilities enabled by single electron detection at high frame rate. Further, the presentation will report on the translation of the TEAM technology to a finer feature size process, resulting in a sensor with higher spatial resolution and superior radiation tolerance currently serving as the baseline for a commercial camera system.

  7. Strain mapping of semiconductor specimens with nm-scale resolution in a transmission electron microscope.

    PubMed

    Cooper, David; Denneulin, Thibaud; Bernier, Nicolas; Béché, Armand; Rouvière, Jean-Luc

    2016-01-01

    The last few years have seen a great deal of progress in the development of transmission electron microscopy based techniques for strain mapping. New techniques have appeared such as dark field electron holography and nanobeam diffraction and better known ones such as geometrical phase analysis have been improved by using aberration corrected ultra-stable modern electron microscopes. In this paper we apply dark field electron holography, the geometrical phase analysis of high angle annular dark field scanning transmission electron microscopy images, nanobeam diffraction and precession diffraction, all performed at the state-of-the-art to five different types of semiconductor samples. These include a simple calibration structure comprising 10-nm-thick SiGe layers to benchmark the techniques. A SiGe recessed source and drain device has been examined in order to test their capabilities on 2D structures. Devices that have been strained using a nitride stressor have been examined to test the sensitivity of the different techniques when applied to systems containing low values of deformation. To test the techniques on modern semiconductors, an electrically tested device grown on a SOI wafer has been examined. Finally a GaN/AlN superlattice was tested in order to assess the different methods of measuring deformation on specimens that do not have a perfect crystalline structure. The different deformation mapping techniques have been compared to one another and the strengths and weaknesses of each are discussed. PMID:26606463

  8. Adaptive optics correction into single mode fiber for a low Earth orbiting space to ground optical communication link using the OPALS downlink.

    PubMed

    Wright, Malcolm W; Morris, Jeffery F; Kovalik, Joseph M; Andrews, Kenneth S; Abrahamson, Matthew J; Biswas, Abhijit

    2015-12-28

    An adaptive optics (AO) testbed was integrated to the Optical PAyload for Lasercomm Science (OPALS) ground station telescope at the Optical Communications Telescope Laboratory (OCTL) as part of the free space laser communications experiment with the flight system on board the International Space Station (ISS). Atmospheric turbulence induced aberrations on the optical downlink were adaptively corrected during an overflight of the ISS so that the transmitted laser signal could be efficiently coupled into a single mode fiber continuously. A stable output Strehl ratio of around 0.6 was demonstrated along with the recovery of a 50 Mbps encoded high definition (HD) video transmission from the ISS at the output of the single mode fiber. This proof of concept demonstration validates multi-Gbps optical downlinks from fast slewing low-Earth orbiting (LEO) spacecraft to ground assets in a manner that potentially allows seamless space to ground connectivity for future high data-rates network. PMID:26832033

  9. Requirements for discrete actuator and segmented wavefront correctors for aberration compensation in two large populations of human eyes

    PubMed Central

    Doble, Nathan; Miller, Donald T.; Yoon, Geunyoung; Williams, David R.

    2009-01-01

    Numerous types of wavefront correctors have been employed in adaptive optics (AO) systems for correcting the ocular wavefront aberration. While all have improved image quality, none have yielded diffraction-limited imaging for large pupils (≥6 mm), where the aberrations are most severe and the benefit of AO the greatest. To this end, we modeled the performance of discrete actuator, segmented piston-only, and segmented piston/tip/tilt wavefront correctors in conjunction with wavefront aberrations measured on normal human eyes in two large populations. The wavefront error was found to be as large as 53 μm, depending heavily on the pupil diameter (2–7.5 mm) and the particular refractive state. The required actuator number for diffraction-limited imaging was determined for three pupil sizes (4.5, 6, and 7.5 mm), three second-order aberration states, and four imaging wavelengths (0.4, 0.6, 0.8, and 1.0 μm). The number across the pupil varied from only a few actuators in the discrete case to greater than 100 for the piston-only corrector. The results presented will help guide the development of wavefront correctors for the next generation of ophthalmic instrumentation. PMID:17579706

  10. VLBI measurement of the secular aberration drift

    NASA Astrophysics Data System (ADS)

    Titov, O.; Lambert, S. B.; Gontier, A.-M.

    2011-05-01

    Aims: While analyzing decades of very long baseline interferometry (VLBI) data, we detected the secular aberration drift of the extragalatic radio source proper motions caused by the rotation of the Solar System barycenter around the Galactic center. Our results agree with the predicted estimate to be 4-6 micro arcseconds per year (μas/yr) towards α = 266° and δ = -29°. In addition, we tried to detect the quadrupole systematics of the velocity field. Methods: The analysis method consisted of three steps. First, we analyzed geodetic and astrometric VLBI data to produce radio source coordinate time series. Second, we fitted proper motions of 555 sources with long observational histories over the period 1990-2010 to their respective coordinate time series. Finally, we fitted vector spherical harmonic components of degrees 1 and 2 to the proper motion field. Results: Within the error bars, the magnitude and the direction of the dipole component agree with predictions. The dipole vector has an amplitude of 6.4 ± 1.5 μas/yr and is directed towards equatorial coordinates α = 263° and δ = -20°. The quadrupole component has not been detected. The primordial gravitational wave density, integrated over a range of frequencies less than 10-9 Hz, has a limit of 0.0042h-2 where h is the normalized Hubble constant is H0/(100 km s-1). We dedicate this work to the memory of Anne-Marie Gontier, our colleague and personal friend, and a widely recognized specialist of VLBI. She passed away shortly after this paper was submitted.Proper motion data is only available in electronic form at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/529/A91

  11. Focusing Diffraction Grating Element with Aberration Control

    NASA Technical Reports Server (NTRS)

    Iazikov, Dmitri; Mossberg, Thomas W.; Greiner, Christoph M.

    2010-01-01

    Diffraction gratings are optical components with regular patterns of grooves, which angularly disperse incoming light by wavelength in a single plane, called dispersion plane. Traditional gratings on flat substrates do not perform wavefront transformation in the plane perpendicular to the dispersion plane. The device proposed here exhibits regular diffraction grating behavior, dispersing light. In addition, it performs wavelength transformation (focusing or defocusing) of diffracted light in a direction perpendicular to the dispersion plane (called sagittal plane). The device is composed of a diffraction grating with the grooves in the form of equidistant arcs. It may be formed by defining a single arc or an arc approximation, then translating it along a certain direction by a distance equal to a multiple of a fixed distance ("grating period") to obtain other groove positions. Such groove layout is nearly impossible to obtain using traditional ruling methods, such as mechanical ruling or holographic scribing, but is trivial for lithographically scribed gratings. Lithographic scribing is the newly developed method first commercially introduced by LightSmyth Technologies, which produces gratings with the highest performance and arbitrary groove shape/spacing for advanced aberration control. Unlike other types of focusing gratings, the grating is formed on a flat substrate. In a plane perpendicular to the substrate and parallel to the translation direction, the period of the grating and, therefore, the projection of its k-vector onto the plane is the same for any location on the grating surface. In that plane, no waveform transformation by the grating k-vector occurs, except of simple redirection.

  12. Optimizing chromatic aberration calibration using a novel genetic algorithm

    NASA Astrophysics Data System (ADS)

    Fang, Yi-Chin; Liu, Tung-Kuan; MacDonald, John; Chou, Jyh-Horng; Wu, Bo-Wen; Tsai, Hsien-Lin; Chang, En-Hao

    2006-10-01

    Advances in digitalized image optics has increased the importance of chromatic aberration. The axial and lateral chromatic aberrations of an optical lens depends on the choice of optical glass. Based on statistics from glass companies worldwide, more than 300 optical glasses have been developed for commercial purposes. However, the complexity of optical systems makes it extremely difficult to obtain the right solution to eliminate small chromatic aberration. Even the damped least-squares technique, which is a ray-tracing-based method, is limited owing to its inability to identify an enhanced optical system configuration. Alternatively, this study instead attempts to eliminate even negligible axial and lateral colour aberration by using algorithms involving the theories of geometric optics in triplet lens, binary and real encoding, multiple dynamic crossover and random gene mutation techniques.

  13. Lens aberration measurement and analysis using a novel pattern

    NASA Astrophysics Data System (ADS)

    Nam, Byung-Ho; Cho, Byeong-Ho; Park, Jong O.; Kim, Dong-Seok; Baek, SungJin; Jeong, JongHo; Nam, ByungSub; Hwang, Young J.; Song, Young Jin

    2001-09-01

    Lens aberration of the exposure tool causes pattern deformation and position shift. As design rule shrinks, the ratio of printed feature size to applied wavelength for optical lithography is driven inexorably toward resolution limit. In this study, we devised an efficient method to evaluate lens aberration using multi-ring pattern on an attenuated phase-shift mask. Adoption of multi-ring pattern can cut down measurement time and improve measurement repeatability. These patterns are uniformly distributed through entire field in 7 by 7 manner. Lens aberration was evaluated by multi-ring pattern array under conventional or off-axis illumination with KrF stepper of NA 0.65. Multi-ring critical dimension (CD) data was discussed together with the issue of lens aberration such as coma, astigmatism, field curvature, etc. We can apply this new measurement technique to select better lens system efficiently. multi-ring, field size, pattern deformation

  14. Aberration analysis of a wedge-plate display system.

    PubMed

    Cheng, Yi-Kai; Chung, Sen-Nien; Chern, Jyh-Long

    2007-08-01

    The aberration characteristics of a wedge-plate display optical system are analyzed. The study shows that a kink-like feature is inherent in the ray-intercept curve due to either the onset of the dark zone in imaging or the coincidence of the ray direction with the vertex. Third-order aberration coefficients are deduced, and the total amount of aberration is investigated to illustrate the basic limitations of image quality in this type of display. The issue of design optimization is also investigated based on the aberration characteristics. A numerical example of a 50 in. display with a 1:10 thickness and a diagonal screen length ratio is also provided. PMID:17621338

  15. Objective shearing digital holography for removing aberration from optical system.

    PubMed

    Pan, Weiqing; Tian, Kehan; Zhang, Chuhang

    2015-09-01

    We propose a new digital holography based on the lateral shearing interference concept to remove the total aberrations from the reference wave, illumination wave, and the optical elements. It uses three mutually shifted image holograms of the object that are divided from each other to obtain phase differences. The phase aberration can be removed and the original sample phase can be reconstructed by the phase differences. Then, the influence of the stage moving imprecision on the reconstruction quality is analyzed. Optical experiments verified that the proposed method can totally remove the phase aberrations. As a result, the proposed method could be used for ultra-precise optical measurement through eliminating optical phase aberration to increase the measurement accuracy. PMID:26368865

  16. Development of a calibration standard for spherical aberration

    NASA Astrophysics Data System (ADS)

    Compertore, David C.; Ignatovich, Filipp V.; Herbrand, Matthew E.; Marcus, Michael A.

    2013-09-01

    There are no calibration standards currently available for metrology equipment used to measure spherical aberration. We have selected a set of plano-convex lenses that can be used as spherical aberration calibration standards. The key parameters of the lenses were measured using a nodal optical bench and a low coherence interferometer. Spherical aberrations of the lenses were measured using a commercially available aberrometer the CrystalWave™, based on a Shack-Hartmann wavefront sensor. The lenses were then modeled in optical modeling software, where the spherical curvatures of the lenses were adjusted to match the key parameters. The measured spherical aberrations were then compared to the values provided by the modeling software.

  17. Task difficulty and aberrant behavior in severely handicapped students.

    PubMed Central

    Weeks, M; Gaylord-Ross, R

    1981-01-01

    The influence of task difficulty on aberrant behavior was investigated with three severely handicapped students. Noticeably higher rates of problem behavior occurred in demand compared to no-demand conditions. In addition, there were higher rates of problem behaviors on difficult versus easy tasks. Both these findings were validated with visual discrimination and perceptual motor tasks. An errorless learning procedure effectively minimized errors and aberrant behavior in visual discrimination tasks but not in perceptual motor tasks. It was conceptualized that aberrant behavior was maintained by negative reinforcement contingencies. Difficult tasks were aversive to the children, who emitted aberrant responses to escape or avoid such tasks. By contrast, conditions in which no demands were made, easy tasks, and, in visual discrimination learning, errorless tasks, were less aversive and resulted in little or no problem behavior. Implications for reducing maladaptive behaviors through curricular modifications are discussed and contrasted to more traditional consequence manipulation approaches. PMID:7328069

  18. Electron Optics for Biologists: Physical Origins of Spherical Aberrations

    ERIC Educational Resources Information Center

    Geissler, Peter; Zadunaisky, Jose

    1974-01-01

    Reports on the physical origins of spherical aberrations in axially symmetric electrostatic lenses to convey the essentials of electon optics to those who must think critically about the resolution of the electron microscope. (GS)

  19. CT of ruptured aneurysm of aberrant right subclavian artery.

    PubMed

    Vega, A; Ortíz, A; Longo, J M; Pagola, M A

    1987-01-01

    This paper presents the first description of a ruptured aneurysm of an aberrant right subclavian artery. CT clearly demonstrated the vascular malformation as well as the existence of a bilateral hemothorax. PMID:3102065

  20. Performance of a phase-conjugate-engine implementing a finite-bit phase correction

    SciTech Connect

    Baker, K; Stappaerts, E; Wilks, S; Young, P; Gavel, D; Tucker, J; Silva, D; Olivier, S

    2003-10-23

    This article examines the achievable Strehl ratio when a finite-bit correction to an aberrated wave-front is implemented. The phase-conjugate-engine (PCE) used to measure the aberrated wavefront consists of a quadrature interferometric wave-front sensor, a liquid-crystal spatial-light-modulator and computer hardware/software to calculate and apply the correction. A finite-bit approximation to the conjugate phase is calculated and applied to the spatial light modulator to remove the aberrations from the optical beam. The experimentally determined Strehl ratio of the corrected beam is compared with analytical expressions for the expected Strehl ratio and shown to be in good agreement with those predictions.