Science.gov

Sample records for ablation dynamics model

  1. Dynamical modeling of laser ablation processes

    SciTech Connect

    Leboeuf, J.N.; Chen, K.R.; Donato, J.M.; Geohegan, D.B.; Liu, C.L.; Puretzky, A.A.; Wood, R.F.

    1995-09-01

    Several physics and computational approaches have been developed to globally characterize phenomena important for film growth by pulsed laser deposition of materials. These include thermal models of laser-solid target interactions that initiate the vapor plume; plume ionization and heating through laser absorption beyond local thermodynamic equilibrium mechanisms; gas dynamic, hydrodynamic, and collisional descriptions of plume transport; and molecular dynamics models of the interaction of plume particles with the deposition substrate. The complexity of the phenomena involved in the laser ablation process is matched by the diversity of the modeling task, which combines materials science, atomic physics, and plasma physics.

  2. Modeling of dynamical processes in laser ablation

    SciTech Connect

    Leboeuf, J.N.; Chen, K.R.; Donato, J.M.; Geohegan, D.B.; Liu, C.L.; Puretzky, A.A.; Wood, R.F.

    1995-12-31

    Various physics and computational approaches have been developed to globally characterize phenomena important for film growth by pulsed-laser deposition of materials. These include thermal models of laser-solid target interactions that initiate the vapor plume, plume ionization and heating through laser absorption beyond local thermodynamic equilibrium mechanisms, hydrodynamic and collisional descriptions of plume transport, and molecular dynamics models of the interaction of plume particles with the deposition substrate.

  3. A compact non-differential approach for modeling laser ablation plasma dynamics

    NASA Astrophysics Data System (ADS)

    Irimiciuc, S. A.; Gurlui, S.; Nica, P.; Focsa, C.; Agop, M.

    2017-02-01

    Various differentiable physical models are frequently used to describe the dynamics of laser-produced plasma plumes (e.g., kinetic models, two-fluid models, etc.). Given the complexity of all the phenomena involved in the laser-matter interactions, it is required to introduce the laser ablation plasma dynamic variable dependencies both on the space-time coordinates and on the resolution scales. Therefore, an adequate theoretical approach may be the use of non-differentiable physical models (fractal models). Continuing our previous work on the fractal hydrodynamic model for laser ablation plasma dynamics, we propose here a compact version for the analysis of the spatial and temporal evolution of some plasma dynamic variables, such as velocities, currents, number densities, or temperatures. Moreover, the influence of external factors on the ablation plasma dynamics is considered. The predictions of this model are compared with the experimental data obtained by using a Langmuir probe on an Aluminum laser-produced plasma.

  4. Dynamics of multiple plumes in laser ablation: Modeling of the shielding effect

    NASA Astrophysics Data System (ADS)

    Zinovik, Igor; Povitsky, Alex

    2006-07-01

    The scattering and absorption of laser radiation by previously ablated plumes in laser ablation (known as the shielding effect) dramatically affect the efficiency of laser ablation process. The ablated plumes consisting of water vapor, droplets, and particles are modeled as a gas-particle equilibrium mixture by solution of the Euler equations combined with the transport equation for the ratio of heat capacities. Shielding effect on the overall ablated mass by multiple plumes is studied for a wide range of concentration of particles in vaporized plumes, various laser repetition rates, scattering, and absorption of laser energy. The shielding phenomenon is studied for short sequences of discrete plumes to focus on the shielding effect of individual plumes. The results of numerical modeling were compared to experimental results of laser-induced water explosive vaporization. Ablation rate was calculated for a single ablated plume and for the sequence of six laser pulses at the repetition rates of 0.33 and 1MHz at which gas dynamics interactions between plumes are strong but plumes have not yet form a continuous jet. A single ablated plume has an initial semispherical shape which transforms into mushroomlike cloud with a thin stem and a ring vortex as it was observed in experiments with water and cornea ablation. For the plume with a given ablated mass, the longer ejection of plume with smaller density produces the plume with smaller shielding capacity. For multiple laser pulses, the velocity of ejected mixture increases from the center of the target to its periphery because of the shielding effect. The ablated mass of the current plume depends on the attenuation of the incident laser beam energy caused by the propagation of laser beam through previously ablated plumes. In the case of laser energy absorption, the ablation rate per pulse exceeds 2-2.5 times the rate obtained for the laser energy scattering.

  5. Application of the Wire Ablation Dynamics Model to the Design and Optimization of Wire Array Loads of Complex Geometry

    SciTech Connect

    Esaulov, A. A.; Kantsyrev, V. L.; Safronova, A. S.; Williamson, K. M.; Shrestha, I.; Osborne, G. C.

    2009-01-21

    The implosion dynamics of wire array loads of complex geometry, such as nested cylindrical and planar wire arrays, is significantly affected by the uneven current distribution between the array wires, which was considered previously in the Wire Dynamics Model (WDM) simulations. The novel Wire Ablation Dynamics Model (WADM) extends the formalism of the original WDM by including the dynamics of wire ablation. The WADM simulations demonstrate that the implosions of the arrays with higher masses are more ablation dominated. The WADM simulations of the implosions dynamics of nested wire arrays have been performed for the short pulse (100 ns) and long pulse (220 ns) regimes at COBRA generator. Another factor that affects the result of the trade between the ablation and implosion time scales is the form of the current pulse, which can be very different from the classical sine-square shape. The predictions of the array implosion times by the WADM are in very good agreement with the recent experiments at the COBRA and Zebra facilities.

  6. Synergist Ablation as a Rodent Model to Study Satellite Cell Dynamics in Adult Skeletal Muscle.

    PubMed

    Kirby, Tyler J; McCarthy, John J; Peterson, Charlotte A; Fry, Christopher S

    2016-01-01

    In adult skeletal muscles, satellite cells are the primary myogenic stem cells involved in myogenesis. Normally, they remain in a quiescent state until activated by a stimulus, after which they proliferate, differentiate, and fuse into an existing myofiber or form a de novo myofiber. To study satellite cell dynamics in adult murine models, most studies utilize regeneration models in which the muscle is severely damaged and requires the participation from satellite cells in order to repair. Here, we describe a model to study satellite cell behavior in muscle hypertrophy that is independent of muscle regeneration.Synergist ablation surgery involves the surgical removal of the gastrocnemius and soleus muscles resulting in functional overload of the remaining plantaris muscle. This functional overload results in myofiber hypertrophy, as well as the activation, proliferation, and fusion of satellite cells into the myofibers. Within 2 weeks of functional overload, satellite cell content increases approximately 275 %, an increase that is accompanied with a ~60 % increase in the number of myonuclei. Therefore, this can be used as an alternative model to study satellite cell behavior in adulthood that is different from regeneration, and capable of revealing new satellite cell functions in regulating muscle adaptation.

  7. Mathematical modelling of tumour volume dynamics in response to stereotactic ablative radiotherapy for non-small cell lung cancer

    NASA Astrophysics Data System (ADS)

    Tariq, Imran; Humbert-Vidan, Laia; Chen, Tao; South, Christopher P.; Ezhil, Veni; Kirkby, Norman F.; Jena, Rajesh; Nisbet, Andrew

    2015-05-01

    This paper reports a modelling study of tumour volume dynamics in response to stereotactic ablative radiotherapy (SABR). The main objective was to develop a model that is adequate to describe tumour volume change measured during SABR, and at the same time is not excessively complex as lacking support from clinical data. To this end, various modelling options were explored, and a rigorous statistical method, the Akaike information criterion, was used to help determine a trade-off between model accuracy and complexity. The models were calibrated to the data from 11 non-small cell lung cancer patients treated with SABR. The results showed that it is feasible to model the tumour volume dynamics during SABR, opening up the potential for using such models in a clinical environment in the future.

  8. Coupled molecular dynamics-Monte Carlo model to study the role of chemical processes during laser ablation of polymeric materials.

    PubMed

    Prasad, Manish; Conforti, Patrick F; Garrison, Barbara J

    2007-08-28

    The coarse grained chemical reaction model is enhanced to build a molecular dynamics (MD) simulation framework with an embedded Monte Carlo (MC) based reaction scheme. The MC scheme utilizes predetermined reaction chemistry, energetics, and rate kinetics of materials to incorporate chemical reactions occurring in a substrate into the MD simulation. The kinetics information is utilized to set the probabilities for the types of reactions to perform based on radical survival times and reaction rates. Implementing a reaction involves changing the reactants species types which alters their interaction potentials and thus produces the required energy change. We discuss the application of this method to study the initiation of ultraviolet laser ablation in poly(methyl methacrylate). The use of this scheme enables the modeling of all possible photoexcitation pathways in the polymer. It also permits a direct study of the role of thermal, mechanical, and chemical processes that can set off ablation. We demonstrate that the role of laser induced heating, thermomechanical stresses, pressure wave formation and relaxation, and thermochemical decomposition of the polymer substrate can be investigated directly by suitably choosing the potential energy and chemical reaction energy landscape. The results highlight the usefulness of such a modeling approach by showing that various processes in polymer ablation are intricately linked leading to the transformation of the substrate and its ejection. The method, in principle, can be utilized to study systems where chemical reactions are expected to play a dominant role or interact strongly with other physical processes.

  9. Test of Thermal Transport Models through Dynamic Overpressure Stabilization of Ablation-Front Perturbation Growth in Laser-Driven CH Foils

    SciTech Connect

    Gotchev, O.V.; Goncharov, V.N.; Knauer, J.P.; Boehly, T.R.; Collins, T.J.B.; Epstein, R.; Jaanimagi, P.A.; Meyerhofer, D.D.

    2006-03-24

    Heat-flow-induced dynamic overpressure at the perturbed ablation front of an ICF target can stabilize the ablative Richtmyer/Meshkov-like instability and mitigate the subsequent ablative Rayleigh/Taylor (RT) instability. A series of experiments was performed on the OMEGA laser to quantify the dynamic overpressure stabilization during the shock transit. Analysis of the experimental data using hydrocode simulations shows that the observed oscillatory evolution of the ablation-front perturbations depends on Dc, the size of the thermal conduction zone, and the fluid velocity in the blowoff region Vbl that are sensitive to the thermal transport model used. We show that the simulations match the experiment well when the time dependence of the heat-flux inhibition is taken into account using a recently developed nonlocal heat transport model.

  10. Pellet ablation and ablation model development

    SciTech Connect

    Houlberg, W.A.

    1989-01-01

    A broad survey of pellet ablation is given, based primarily on information presented at this meeting. The implications of various experimental observations for ablation theory are derived from qualitative arguments of the physics involved. The major elements of a more complete ablation theory are then outlined in terms of these observations. This is followed by a few suggestions on improving the connections between theory and experimental results through examination of ablation data. Although this is a rather aggressive undertaking for such a brief (and undoubtedly incomplete) assessment, some of the discussion may help us advance the understanding of pellet ablation. 17 refs.

  11. Thermal Ablation Modeling for Silicate Materials

    NASA Technical Reports Server (NTRS)

    Chen, Yih-Kanq

    2016-01-01

    A general thermal ablation model for silicates is proposed. The model includes the mass losses through the balance between evaporation and condensation, and through the moving molten layer driven by surface shear force and pressure gradient. This model can be applied in the ablation simulation of the meteoroid and the glassy ablator for spacecraft Thermal Protection Systems. Time-dependent axisymmetric computations are performed by coupling the fluid dynamics code, Data-Parallel Line Relaxation program, with the material response code, Two-dimensional Implicit Thermal Ablation simulation program, to predict the mass lost rates and shape change. The predicted mass loss rates will be compared with available data for model validation, and parametric studies will also be performed for meteoroid earth entry conditions.

  12. Molecular dynamics simulations studies of laser ablation in metals

    SciTech Connect

    Roth, Johannes; Sonntag, Steffen; Karlin, Johannes; Paredes, Carolina Trichet; Sartison, Marc; Krauss, Armin; Trebin, Hans-Rainer

    2012-07-30

    An overview of several aspects of our recent molecular dynamics simulations of femtosecond laser ablation is presented. This includes the study of phase diagrams for suitable interactions, analysis of ablated material and bubble formation below threshold, study of two-pulse ablation and the classification of materials with respect to electron properties and electron-phonon coupling in the two-temperature model. A treatment of boundary conditions and of an extended twotemperature model is also included. Most of the results apply to aluminum, others also to copper and iron, and to metals in general.

  13. Thermal Ablation Modeling for Silicate Materials

    NASA Technical Reports Server (NTRS)

    Chen, Yih-Kanq

    2016-01-01

    A thermal ablation model for silicates is proposed. The model includes the mass losses through the balance between evaporation and condensation, and through the moving molten layer driven by surface shear force and pressure gradient. This model can be applied in ablation simulations of the meteoroid or glassy Thermal Protection Systems for spacecraft. Time-dependent axi-symmetric computations are performed by coupling the fluid dynamics code, Data-Parallel Line Relaxation program, with the material response code, Two-dimensional Implicit Thermal Ablation simulation program, to predict the mass lost rates and shape change. For model validation, the surface recession of fused amorphous quartz rod is computed, and the recession predictions reasonably agree with available data. The present parametric studies for two groups of meteoroid earth entry conditions indicate that the mass loss through moving molten layer is negligibly small for heat-flux conditions at around 1 MW/cm(exp. 2).

  14. Laser ablation dynamics in metals: The thermal regime

    SciTech Connect

    Mezzapesa, F. P.; Brambilla, M.; Dabbicco, M.; Scamarcio, G.; Columbo, L. L.; Ancona, A.; Sibillano, T.

    2012-07-02

    We studied the laser ablation dynamics of steel in the thermal regime both experimentally and theoretically. The real-time monitoring of the process shows that the ablation rate depends on laser energy density and ambient pressure during the exposure time. We demonstrated that the ablation efficiency can be enhanced when the pressure is reduced with respect to the atmospheric pressure for a given laser fluence, reaching an upper limit despite of high-vacuum conditions. An analytical model based on the Hertz-Knudsen law reproduces all the experimental results.

  15. Approximate model for laser ablation of carbon

    NASA Astrophysics Data System (ADS)

    Shusser, Michael

    2010-08-01

    The paper presents an approximate kinetic theory model of ablation of carbon by a nanosecond laser pulse. The model approximates the process as sublimation and combines conduction heat transfer in the target with the gas dynamics of the ablated plume which are coupled through the boundary conditions at the interface. The ablated mass flux and the temperature of the ablating material are obtained from the assumption that the ablation rate is restricted by the kinetic theory limitation on the maximum mass flux that can be attained in a phase-change process. To account for non-uniform distribution of the laser intensity while keeping the calculation simple the quasi-one-dimensional approximation is used in both gas and solid phases. The results are compared with the predictions of the exact axisymmetric model that uses the conservation relations at the interface derived from the momentum solution of the Boltzmann equation for arbitrary strong evaporation. It is seen that the simpler approximate model provides good accuracy.

  16. Molecular dynamics investigation of mechanisms of femtosecond laser ablation

    NASA Astrophysics Data System (ADS)

    Cheng, Changrui

    Laser micro-machining has been widely applied for material processing in many industries. A phenomenon called "laser ablation" is usually involved in the laser micro-machining process. Laser ablation is the process of material removal after the irradiation of a laser beam onto the material. It is commonly characterized by small temporal and spatial scales, extremely high material temperature and pressure, and strong non-equilibrium thermodynamic state. In this work, molecular dynamics (MD) simulation is conducted to study the femtosecond laser ablation of metals (nickel and copper) and dielectrics (fused silica, or glass). The laser heating and the ablation processes are numerically modeled, and the computation is accelerated by parallel processing technique. Both the pair-wise Morse potential and the many-body EAM (Embedded-Atom Method) potential are employed for metals. In the simulation of fused silica, the BKS (van Beest, Kramer and van Santen) potential is used, and the generation of free electrons, the energy transport from laser beam to free electrons and energy coupling between electrons and the lattice are considered. The main goal of this work is to illustrate the detailed processes of femtosecond laser ablation and to study its mechanisms. From the MD results, it is found that the mechanism of femtosecond laser ablation is strongly dependent on the laser fluences. For metals, low fluence laser ablation is mainly through phase explosion (homogeneous gas bubble nucleation), while spinodal decomposition is responsible for high fluence ablation. Ablation mechanism is determined by whether or not the material (liquid) temperature exceeds the critical temperature. For fused silica, the generation and existence of free electrons are found to affect ablation significantly, especially at low fluence, where Coulomb explosion is found to play an important role in material separation.

  17. Theoretical Modeling for Hepatic Microwave Ablation

    PubMed Central

    Prakash, Punit

    2010-01-01

    Thermal tissue ablation is an interventional procedure increasingly being used for treatment of diverse medical conditions. Microwave ablation is emerging as an attractive modality for thermal therapy of large soft tissue targets in short periods of time, making it particularly suitable for ablation of hepatic and other tumors. Theoretical models of the ablation process are a powerful tool for predicting the temperature profile in tissue and resultant tissue damage created by ablation devices. These models play an important role in the design and optimization of devices for microwave tissue ablation. Furthermore, they are a useful tool for exploring and planning treatment delivery strategies. This review describes the status of theoretical models developed for microwave tissue ablation. It also reviews current challenges, research trends and progress towards development of accurate models for high temperature microwave tissue ablation. PMID:20309393

  18. Laser ablation plume dynamics in nanoparticle synthesis

    SciTech Connect

    Osipov, V V; Platonov, V V; Lisenkov, V V

    2009-06-30

    The dynamics of the plume ejected from the surface of solid targets (YSZ, Nd:YAG and graphite) by a CO{sub 2} laser pulse with a duration of {approx}500 {mu}s (at the 0.03 level), energy of 1.0-1.3 J and peak power of 6-7 kW have been studied using high-speed photography of the plume luminescence and shadow. The targets were used to produce nanopowders by laser evaporation. About 200 {mu}s after termination of the pulse, shadowgraph images of the plumes above the YSZ and Nd:YAG targets showed dark straight tracks produced by large particles. The formation of large ({approx}10 {mu}m) particles is tentatively attributed to cracking of the solidified melt at the bottom of the ablation crater. This is supported by the fact that no large particles are ejected from graphite, which sublimes without melting. Further support to this hypothesis is provided by numerical 3D modelling of melt cooling in craters produced by laser pulses of different shapes. (interaction of laser radiation with matter. laser plasma)

  19. Simple model for ablative stabilization

    NASA Astrophysics Data System (ADS)

    Mikaelian, Karnig O.

    1992-11-01

    We present a simple analytic model for ablative stablization of the Rayleigh-Taylor instability. In this model the effect of ablation is to move the peak of the perturbations to the location of peak pressure. This mechanism enhances the density-gradient stabilization, which is effective at short wavelengths, and it also enhances the stabilization of long-wavelength perturbations due to finite shell thickness. We consider the following density profile: exponential blowoff plasma with a density gradient β, followed by a constant-density shell of thickness δt. For perturbations of arbitrary wave number k, we present an explicit expression for the growth rate γ as a function of k, β, and δt. We find that ``thick'' shells defined by β δt>=1 have γ2>=0 for any k, while ``thin'' shells defined by β δt<1 can have γ2<0 for small k, reflecting stability by proximity to the back side of the shell. We also present lasnex simulations that are in good agreement with our analytic formulas.

  20. On the Ablation Models of Fuel Pellets

    SciTech Connect

    Rozhansky, V.A.; Senichenkov, I.Yu.

    2005-12-15

    The neutral gas shielding model and neutral-gas-plasma shielding model are analyzed qualitatively. The main physical processes that govern the formation of the shielding gas cloud and, consequently, the ablation rate are considered. For the neutral gas shielding model, simple formulas relating the ablation rate and cloud parameters to the parameters of the pellet and the background plasma are presented. The estimates of the efficiency of neutral gas shielding and plasma shielding are compared. It is shown that the main portion of the energy flux of the background electrons is released in the plasma cloud. Formulas for the ablation rate and plasma parameters are derived in the neutral-gas-plasma shielding model. The question is discussed as to why the neutral gas shielding model describes well the ablation rate of the pellet material, although it does not take into account the ionization effects and the effects associated with the interaction of ionized particles with the magnetic field. The reason is that the ablation rate depends weakly on the energy flux of hot electrons; as a result, the attenuation of this flux by the electrostatic shielding and plasma shielding has little effect on the ablation rate. This justifies the use of the neutral gas shielding model to estimate the ablation rate (to within a factor of about 2) over a wide range of parameters of the pellet and the background plasma.

  1. Ablation dynamics in laser sclerotomy ab externo

    NASA Astrophysics Data System (ADS)

    Brinkmann, Ralf; Droege, Gerit; Mohrenstecher, Dirk; Scheu, M.; Birngruber, Reginald

    1996-01-01

    Laser sclerostomy ab externo with flashlamp excited mid-IR laser systems emitting in the 2-3 micrometer spectral range is in phase II clinical trials. Although acutely high success rates were achieved, the restenosis rate after several months is about 40%. Laser pulses of several hundreds of microseconds, known to induce thermo-mechanical explosive evaporation were used for this procedure. We investigated the ablation dynamics in tissue and the cavitation bubble dynamics in water by means of an Er:YAG laser system to estimate the extent of mechanical damage zones in the sclera and in the anterior chamber, which may contribute to the clinical failure. We found substantial mechanical tissue deformation during the ablation process caused by the cavitation effects. Stress waves up to several bar generated by explosive evaporization were measured. The fast mechanical stretching and collapsing of the scleral tissue induced by cavitation resulted in tissue dissection as could be proved by flash photography and histology. The observed high restenosis might be a result of a subsequent enhanced wound healing process. Early fistula occlusions due to iris adherences, observed in about 20% of the clinical cases may be attributed to intraocular trauma induced by vapor bubble expansion through the anterior chamber after scleral perforation. An automatic feedback system minimizing adverse effects by steering and terminating the laser process during scleral fistulization is demonstrated. Moreover, a new approach in laser sclerostomy ab externo is presented using a cw-IR laser diode system emitting at the 1.94 micrometer mid-IR water absorption peak. This system was used in vitro and showed smaller damage zones compared to the pulsed laser radiation.

  2. Molecular dynamic simulation of tungsten ablation under transient high heat flux

    NASA Astrophysics Data System (ADS)

    Yan, Sha; Zhu, Yizhou; Xue, Jianming; Zhang, Jie; Qu, Miao; Le, Xiaoyun

    2015-08-01

    Molecular dynamic (MD) method is used to simulation the tungsten ablation under transient high heat flux generated by energetic ions. A model including 363,600 W atoms was built based on Finnis-Sinclair potential. The results show that the ablation threshold is much lower than the one of boiling. So the ablation effects might be underestimated if using energy threshold of boiling instead of that of ablation. Particle size distribution of ablation products follows a power decay law with an exponent around -2.5, which does not affect by the incident heat flux. The transverse velocities of particles obey normal distribution, and a stream speed is added to the random movement for the longitudinal velocity. As the ablation start up, the recoiled impulse can induce shock wave in remained target, which is supported by experimental pressure wave measurements.

  3. Higher Order Chemistry Models in the CFD Simulation of Laser-Ablated Carbon Plumes

    NASA Technical Reports Server (NTRS)

    Greendyke, R. B.; Creel, J. R.; Payne, B. T.; Scott, C. D.

    2005-01-01

    Production of single-walled carbon nanotubes (SWNT) has taken place for a number of years and by a variety of methods such as laser ablation, chemical vapor deposition, and arc-jet ablation. Yet, little is actually understood about the exact chemical kinetics and processes that occur in SWNT formation. In recent time, NASA Johnson Space Center has devoted a considerable effort to the experimental evaluation of the laser ablation production process for SWNT originally developed at Rice University. To fully understand the nature of the laser ablation process it is necessary to understand the development of the carbon plume dynamics within the laser ablation oven. The present work is a continuation of previous studies into the efforts to model plume dynamics using computational fluid dynamics (CFD). The ultimate goal of the work is to improve understanding of the laser ablation process, and through that improved understanding, refine the laser ablation production of SWNT.

  4. Microwave Ablation Compared with Radiofrequency Ablation for Breast Tissue in an Ex Vivo Bovine Udder Model

    SciTech Connect

    Tanaka, Toshihiro; Westphal, Saskia; Isfort, Peter; Braunschweig, Till; Penzkofer, Tobias Bruners, Philipp; Kichikawa, Kimihiko; Schmitz-Rode, Thomas Mahnken, Andreas H.

    2012-08-15

    Purpose: To compare the effectiveness of microwave (MW) ablation with radiofrequency (RF) ablation for treating breast tissue in a nonperfused ex vivo model of healthy bovine udder tissue. Materials and Methods: MW ablations were performed at power outputs of 25W, 35W, and 45W using a 915-MHz frequency generator and a 2-cm active tip antenna. RF ablations were performed with a bipolar RF system with 2- and 3-cm active tip electrodes. Tissue temperatures were continuously monitored during ablation. Results: The mean short-axis diameters of the coagulation zones were 1.34 {+-} 0.14, 1.45 {+-} 0.13, and 1.74 {+-} 0.11 cm for MW ablation at outputs of 25W, 35W, and 45W. For RF ablation, the corresponding values were 1.16 {+-} 0.09 and 1.26 {+-} 0.14 cm with electrodes having 2- and 3-cm active tips, respectively. The mean coagulation volumes were 2.27 {+-} 0.65, 2.85 {+-} 0.72, and 4.45 {+-} 0.47 cm{sup 3} for MW ablation at outputs of 25W, 35W, and 45W and 1.18 {+-} 0.30 and 2.29 {+-} 0.55 cm{sup 3} got RF ablation with 2- and 3-cm electrodes, respectively. MW ablations at 35W and 45W achieved significantly longer short-axis diameters than RF ablations (P < 0.05). The highest tissue temperature was achieved with MW ablation at 45W (P < 0.05). On histological examination, the extent of the ablation zone in MW ablations was less affected by tissue heterogeneity than that in RF ablations. Conclusion: MW ablation appears to be advantageous with respect to the volume of ablation and the shape of the margin of necrosis compared with RF ablation in an ex vivo bovine udder.

  5. Numerical Modeling of Ablation Heat Transfer

    NASA Technical Reports Server (NTRS)

    Ewing, Mark E.; Laker, Travis S.; Walker, David T.

    2013-01-01

    A unique numerical method has been developed for solving one-dimensional ablation heat transfer problems. This paper provides a comprehensive description of the method, along with detailed derivations of the governing equations. This methodology supports solutions for traditional ablation modeling including such effects as heat transfer, material decomposition, pyrolysis gas permeation and heat exchange, and thermochemical surface erosion. The numerical scheme utilizes a control-volume approach with a variable grid to account for surface movement. This method directly supports implementation of nontraditional models such as material swelling and mechanical erosion, extending capabilities for modeling complex ablation phenomena. Verifications of the numerical implementation are provided using analytical solutions, code comparisons, and the method of manufactured solutions. These verifications are used to demonstrate solution accuracy and proper error convergence rates. A simple demonstration of a mechanical erosion (spallation) model is also provided to illustrate the unique capabilities of the method.

  6. Dynamics of Laser Ablation in Superfluid ^4{He}

    NASA Astrophysics Data System (ADS)

    Buelna, X.; Popov, E.; Eloranta, J.

    2017-02-01

    Pulsed laser ablation of metal targets immersed in superfluid ^4{He} is visualized by time-resolved shadowgraph photography and the products are analyzed by post-experiment atomic force microscopy (AFM) measurements. The expansion dynamics of the gaseous ablation half-bubble on the target surface appears underdamped and follows the predicted behavior for the thermally induced bubble growth mechanism. An inherent instability of the ablation bubble appears near its maximum radius and no tightly focused cavity collapse or rebound events are observed. During the ablation bubble retreat phase, the presence of sharp edges in the target introduces flow patterns that lead to the creation of large classical vortex rings. Furthermore, on the nanometer scale, AFM data reveal that the metal nanoparticles created by laser ablation are trapped in spherical vortex tangles and quantized vortex rings present in the non-equilibrium liquid.

  7. General Model for Multicomponent Ablation Thermochemistry

    NASA Technical Reports Server (NTRS)

    Milos, Frank S.; Marschall, Jochen; Rasky, Daniel J. (Technical Monitor)

    1994-01-01

    A previous paper (AIAA 94-2042) presented equations and numerical procedures for modeling the thermochemical ablation and pyrolysis of thermal protection materials which contain multiple surface species. This work describes modifications and enhancements to the Multicomponent Ablation Thermochemistry (MAT) theory and code for application to the general case which includes surface area constraints, rate limited surface reactions, and non-thermochemical mass loss (failure). Detailed results and comparisons with data are presented for the Shuttle Orbiter reinforced carbon-carbon oxidation protection system which contains a mixture of sodium silicate (Na2SiO3), silica (SiO2), silicon carbide (SiC), and carbon (C).

  8. Ablation Plume Dynamics in a Background Gas

    SciTech Connect

    Amoruso, Salvatore; Schou, Joergen; Lunney, James G.

    2010-10-08

    The expansion of a plume in a background gas of pressure comparable to that used in pulsed laser deposition (PLD) has been analyzed in terms of the model of Predtechensky and Mayorov (PM). This approach gives a relatively clear and simple description of the essential hydrodynamics during the expansion. The model also leads to an insightful treatment of the stopping behavior in dimensionless units for plumes and background gases of different atomic/molecular masses. The energetics of the plume dynamics can also be treated with this model. Experimental time-of-flight data of silver ions in a neon background gas show a fair agreement with predictions from the PM-model. Finally we discuss the validity of the model, if the work done by the pressure of the background gas is neglected.

  9. Calcified lesion modeling for excimer laser ablation

    NASA Astrophysics Data System (ADS)

    Scott, Holly A.; Archuleta, Andrew; Splinter, Robert

    2009-06-01

    Objective: Develop a representative calcium target model to evaluate penetration of calcified plaque lesions during atherectomy procedures using 308 nm Excimer laser ablation. Materials and Methods: An in-vitro model representing human calcified plaque was analyzed using Plaster-of-Paris and cement based composite materials as well as a fibrinogen model. The materials were tested for mechanical consistency. The most likely candidate(s) resulting from initial mechanical and chemical screening was submitted for ablation testing. The penetration rate of specific multi-fiber catheter designs and a single fiber probe was obtained and compared to that in human cadaver calcified plaque. The effects of lasing parameters and catheter tip design on penetration speed in a representative calcified model were verified against the results in human cadaver specimens. Results: In Plaster of Paris, the best penetration was obtained using the single fiber tip configuration operating at 100 Fluence, 120 Hz. Calcified human lesions are twice as hard, twice as elastic as and much more complex than Plaster of Paris. Penetration of human calcified specimens was highly inconsistent and varied significantly from specimen to specimen and within individual specimens. Conclusions: Although Plaster of Paris demonstrated predictable increases in penetration with higher energy density and repetition rate, it can not be considered a totally representative laser ablation model for calcified lesions. This is in part due to the more heterogeneous nature and higher density composition of cadaver intravascular human calcified occlusions. Further testing will require a more representative model of human calcified lesions.

  10. Diagnosing implosion velocity and ablator dynamics at NIF (u)

    SciTech Connect

    Hayes, Anna; Grim, Gary; Jungnam, Jerry; Bradley, Paul; Rundberg, Bob; Wilhelmy, Jerry; Wilson, Doug

    2009-07-09

    An enhanced understanding of the unique physics probed in a burning NIP capsule is important for both nuclear weapons physics and thermonuclear ignition. In this talk we introduce a new diagnostic idea, designed to measure dynamic aspects of the capsule implosion that are not currently accessible. The current set of diagnostics for the NIF experiments includes reaction history (a time resolved measure of the d + t burn), neutron time-of-flight and spectrometry and spatial imaging of the neutron production and scattering. Although valuable, this abbreviated set of diagnostics cannot determine key dynamical properties of the implosion, such as implosion velocity (v{sub impl}) and ablator thickness. To surpass the present limits of {approx} 10{sup 15} d+t reactions, it will be necessary to increase significantly the implosion energy delivered to the DT fuel by finely tuning the balance between the remaining (imploding) ablator mass and velocity. If too much mass remains, the implosion velocity will be too slow, and the subsecpwnt PdV work will not be sufficient to overcome cooling via conduction and radiation. If too little mass remains, hydrodynamic instabilities will occur, resulting in unpredictable and degraded performance. Detailed calculations suggest the ablator must reach an implosion velocity of 3-4 x 10{sup 7} cm/sec and an areal density of {rho}{Delta}R {approx}200 mg/cm{sup 2} in order to achieve ignition. The authors present a new scheme to measure these important quantities using neutron reactions on the ablator material. During the burn, the ablator is moving relative to the 14.1 MeV d+t neutrons that are traversing the capsule. The resulting neutron-ablator Doppler shift causes a few unique nuclear reactions to become sensitive detectors of the ablator velocity at peak burn time. The 'point-design' capsule at the NIF will be based on a {sup 9}Be ablator, and the {sup 9}Be(n,p){sup 9}Li reaction has an energy threshold of 14.2 MeV, making it the ideal

  11. Molecular dynamics simulation of heat-affected zone of copper metal ablated with femtosecond laser

    NASA Astrophysics Data System (ADS)

    Hirayama, Yoichi; Obara, Minoru

    2005-03-01

    Femtosecond laser ablation of materials with high thermal conductivity is of paramount importance, because the chemical composition and properties of the area ablated with femtosecond laser are kept unchanged. The material processing by femtosecond laser can well control the heat-affected zone, compared to nanosecond laser ablation. We report on the heat-affected zone of crystalline copper (Cu) by use of femtosecond laser experimentally and theoretically. Laser ablation of Cu is investigated theoretically by two temperature model and molecular dynamics (MD) simulation. The MD simulation takes into account of electron temperature and thermal diffusion length calculated by two temperature model. The dependence of lattice temperature on time and depth is calculated by the MD simulation and two temperature model. The heat-affected zone estimated from the temperature is mainly studied and calculated to be 3 nm at 0.02 J/cm2 which is below the threshold fluence of 0.137 J/cm2. In addition, the thickness of heat-affected zone of copper crystal ablated with femtosecond Ti:sapphire laser is experimentally studied. As a result of X-ray diffraction (XRD) of the ablated surface, the surface crystallinity is partially changed into disordered structure from crystal form. The residual energy left in the metal, which is not used for ablation, will induce liquid phase, leading to the amorphous phase of the metal during resolidification. The thickness of heat-affected zone depends on laser fluence and is experimentally measured to be less than 1 μm at higher laser fluences than the ablation threshold.

  12. Efficiency and Plume Dynamics for Mid-IR Laser Ablation of Cornea

    NASA Astrophysics Data System (ADS)

    Jayasinghe, Aroshan; Ivanov, Borislav; Hutson, M. Shane

    2009-03-01

    This paper reports ablation experiments on porcine corneal tissue using the Vanderbilt Mark III Free Electron Laser (FEL) and a tabletop Raman-shifted Alexandrite laser. These experiments were designed to test previous models that suggested wavelength and intensity dependent ablation mechanisms. In one test, we compare ablation efficiency and plume dynamics for two FEL wavelengths (λ=2.77, 6.45 μm) chosen such that different components of the tissue matrix act as the primary chromophore (water or protein respectively), while keeping the total absorption constant. We find small differences in ablation efficiency (with slightly more efficient ablation at 2.77 μm); no difference in shockwave propagation; and slightly more particulate matter in the plume at 6.45 μm. In a second test, we find that the Raman-shifted Alexandrite laser has similar ablation efficiency to the FEL in the 6-7 μm range -- despite a ˜500-fold higher intensity. Although these results do not confirm the previous model predictions, the findings do suggest that the Raman-shifted laser can be a viable alternative to the FEL for surgical applications.

  13. Electromagnetic measurement and modeling techniques for microwave ablation probes.

    PubMed

    Brannan, Joseph D

    2009-01-01

    Broadband scattering parameter measurement of a commercially available microwave ablation probe over the course of a 10 minute 45 Watt ablation cycle within ex-vivo bovine liver tissue is performed. Measurement results are compared to finite difference time domain simulation of the probe in non-ablated and fully ablated tissue geometries. Measurement and simulation results agree well from 0-3 GHz demonstrating the accuracy of a multi-compartmental ablation geometry modeling technique. The electromagnetic modeling technique presented in this paper introduces a useful design tool for optimizing microwave ablation probes without the need for multi-physics simulation packages. The relevance of tissue complex permittivity change with temperature to microwave ablation probe performance is discussed.

  14. Modeling CO{sub 2} Laser Ablative Impulse with Polymers

    SciTech Connect

    Sinko, John E.; Phipps, Claude R.; Sasoh, Akihiro

    2010-10-08

    Laser ablation vaporization models have usually ignored the spatial dependence of the laser beam. Here, we consider effects from modeling using a Gaussian beam for both photochemical and photothermal conditions. The modeling results are compared to experimental and literature data for CO{sub 2} laser ablation of the polymer polyoxymethylene under vacuum, and discussed in terms of the ablated mass areal density and momentum coupling coefficient. Extending the scope of discussion, laser ablative impulse generation research has lacked a cohesive strategy for linking the vaporization and plasma regimes. Existing models, mostly formulated for ultraviolet laser systems or metal targets, appear to be inappropriate or impractical for applications requiring CO{sub 2} laser ablation of polymers. A recently proposed method for linking the vaporization and plasma regimes for analytical modeling is addressed here along with the implications of its use. Key control parameters are considered, along with the major propulsion parameters needed for laser ablation propulsion modeling.

  15. 3D photomechanical model of tooth enamel ablation by Er-laser radiation

    NASA Astrophysics Data System (ADS)

    Belikov, Andrey V.; Shatilova, Ksenia V.; Skrypnik, Alexei V.

    2014-02-01

    The three-dimensional (3D) photomechanical model of human tooth enamel ablation is described. It takes into account: the structural peculiarities of enamel, Er-laser beam energy spatial distribution and laser radiation attenuation in the tissue. Dynamics change of enamel coefficient of absorption during ablation is also discussed. We consider the 3D photomechanical model of incomplete removal (modification) of the enamel rods by the pressure of water contained in the enamel pores and heated by laser radiation, and complete removal (ablation) of the enamel rods as result of hydroxyapatite heated by laser radiation and evaporation. Modeling results are in close agreement with the experimental results.

  16. Mathematical Modeling of Laser Ablation in Liquids with Applications to Laser Ultrasonics

    SciTech Connect

    Conant, R. J.; Telschow, Kenneth Louis; Walter, John Bradley

    2002-12-01

    The use of laser ablation as a means of generating ultrasonic waves in liquid metals is studied in this paper. A mathematical model for predicting the onset of ablation is developed, as is a model of the ablation process based on steady state, one-dimensional gas dynamics in which the vapor phase is treated as an ideal gas. The results of this model are then used in a quasi-two-dimensional model of laser ablation that accounts for the spatial distribution of intensity in the laser beam. Model predictions are compared with experiments conducted on liquid mercury and excellent agreement is obtained. Based on these results, a simplified model is developed that shows excellent agreement with both the theory and the experiments.

  17. Damage in materials following ablation by ultrashort laser pulses: A molecular-dynamics study

    SciTech Connect

    Bouilly, Delphine; Perez, Danny; Lewis, Laurent J.

    2007-11-01

    The formation of craters following femtosecond- and picosecond-pulse laser ablation in the thermal regime is studied using a generic two-dimensional numerical model based on molecular-dynamics simulations and the Lennard-Jones potential. Femtosecond pulses are found to produce very clean craters through a combination of etching of the walls and the formation of a very thin heat affected zone. Our simulations also indicate that dislocations are emitted continuously during all of the ablation process (i.e., for hundreds of ps). For picosecond pulses, we observe much thicker heat affected zones which result from melting and recrystallization following the absorption of the light. In this case also, continuous emission of dislocations--though fewer in number--takes place throughout the ablation process.

  18. Computational modeling of ultra-short-pulse ablation of enamel

    SciTech Connect

    London, R.A.; Bailey, D.S.; Young, D.A.

    1996-02-29

    A computational model for the ablation of tooth enamel by ultra-short laser pulses is presented. The role of simulations using this model in designing and understanding laser drilling systems is discussed. Pulses of duration 300 sec and intensity greater than 10{sup 12} W/cm{sup 2} are considered. Laser absorption proceeds via multi-photon initiated plasma mechanism. The hydrodynamic response is calculated with a finite difference method, using an equation of state constructed from thermodynamic functions including electronic, ion motion, and chemical binding terms. Results for the ablation efficiency are presented. An analytic model describing the ablation threshold and ablation depth is presented. Thermal coupling to the remaining tissue and long-time thermal conduction are calculated. Simulation results are compared to experimental measurements of the ablation efficiency. Desired improvements in the model are presented.

  19. Laser ablation of a turbid medium: Modeling and experimental results

    SciTech Connect

    Brygo, F.; Semerok, A.; Weulersse, J.-M.; Thro, P.-Y.; Oltra, R.

    2006-08-01

    Q-switched Nd:YAG laser ablation of a turbid medium (paint) is studied. The optical properties (absorption coefficient, scattering coefficient, and its anisotropy) of a paint are determined with a multiple scattering model (three-flux model), and from measurements of reflection-transmission of light through thin layers. The energy deposition profiles are calculated at wavelengths of 532 nm and 1.064 {mu}m. They are different from those described by a Lambert-Beer law. In particular, the energy deposition of the laser beam is not maximum on the surface but at some depth inside the medium. The ablated rate was measured for the two wavelengths and compared with the energy deposition profile predicted by the model. This allows us to understand the evolution of the ablated depth with the wavelength: the more the scattering coefficient is higher, the more the ablated depth and the threshold fluence of ablation decrease.

  20. Molecular dynamics investigation of desorption and ion separation following picosecond infrared laser (PIRL) ablation of an ionic aqueous protein solution.

    PubMed

    Zou, J; Wu, C; Robertson, W D; Zhigilei, L V; Miller, R J D

    2016-11-28

    Molecular dynamics simulations were performed to characterize the ablation process induced by a picosecond infrared laser (PIRL) operating in the regime of desorption by impulsive vibrational excitation (DIVE) of a model peptide (lysozyme)/counter-ion system in aqueous solution. The simulations were performed for ablation under typical experimental conditions found within a time-of-flight mass spectrometer (TOF-MS), that is in vacuum with an applied electric field (E = ± 10(7) V/m), for up to 2 ns post-ablation and compared to the standard PIRL-DIVE ablation condition (E = 0 V/m). Further, a simulation of ablation under an extreme field condition (E = 10(10) V/m) was performed for comparison to extend the effective dynamic range of the effect of the field on charge separation. The results show that the plume dynamics were retained under a typical TOF-MS condition within the first 1 ns of ablation. Efficient desorption was observed with more than 90% of water molecules interacting with lysozyme stripped off within 1 ns post-ablation. The processes of ablation and desolvation of analytes were shown to be independent of the applied electric field and thus decoupled from the ion separation process. Unlike under the extreme field conditions, the electric field inside a typical TOF-MS was shown to modify the ions' motion over a longer time and in a soft manner with no enhancement to fragmentation observed as compared to the standard PIRL-DIVE. The study indicates that the PIRL-DIVE ablation mechanism could be used as a new, intrinsically versatile, and highly sensitive ion source for quantitative mass spectrometry.

  1. Molecular dynamics investigation of desorption and ion separation following picosecond infrared laser (PIRL) ablation of an ionic aqueous protein solution

    NASA Astrophysics Data System (ADS)

    Zou, J.; Wu, C.; Robertson, W. D.; Zhigilei, L. V.; Miller, R. J. D.

    2016-11-01

    Molecular dynamics simulations were performed to characterize the ablation process induced by a picosecond infrared laser (PIRL) operating in the regime of desorption by impulsive vibrational excitation (DIVE) of a model peptide (lysozyme)/counter-ion system in aqueous solution. The simulations were performed for ablation under typical experimental conditions found within a time-of-flight mass spectrometer (TOF-MS), that is in vacuum with an applied electric field (E = ± 107 V/m), for up to 2 ns post-ablation and compared to the standard PIRL-DIVE ablation condition (E = 0 V/m). Further, a simulation of ablation under an extreme field condition (E = 1010 V/m) was performed for comparison to extend the effective dynamic range of the effect of the field on charge separation. The results show that the plume dynamics were retained under a typical TOF-MS condition within the first 1 ns of ablation. Efficient desorption was observed with more than 90% of water molecules interacting with lysozyme stripped off within 1 ns post-ablation. The processes of ablation and desolvation of analytes were shown to be independent of the applied electric field and thus decoupled from the ion separation process. Unlike under the extreme field conditions, the electric field inside a typical TOF-MS was shown to modify the ions' motion over a longer time and in a soft manner with no enhancement to fragmentation observed as compared to the standard PIRL-DIVE. The study indicates that the PIRL-DIVE ablation mechanism could be used as a new, intrinsically versatile, and highly sensitive ion source for quantitative mass spectrometry.

  2. Numerical investigation on target implosions driven by radiation ablation and shock compression in dynamic hohlraums

    SciTech Connect

    Xiao, Delong; Sun, Shunkai; Zhao, Yingkui; Ding, Ning; Wu, Jiming; Dai, Zihuan; Yin, Li; Zhang, Yang; Xue, Chuang

    2015-05-15

    In a dynamic hohlraum driven inertial confinement fusion (ICF) configuration, the target may experience two different kinds of implosions. One is driven by hohlraum radiation ablation, which is approximately symmetric at the equator and poles. The second is caused by the radiating shock produced in Z-pinch dynamic hohlraums, only taking place at the equator. To gain a symmetrical target implosion driven by radiation ablation and avoid asymmetric shock compression is a crucial issue in driving ICF using dynamic hohlraums. It is known that when the target is heated by hohlraum radiation, the ablated plasma will expand outward. The pressure in the shocked converter plasma qualitatively varies linearly with the material temperature. However, the ablation pressure in the ablated plasma varies with 3.5 power of the hohlraum radiation temperature. Therefore, as the hohlraum temperature increases, the ablation pressure will eventually exceed the shock pressure, and the expansion of the ablated plasma will obviously weaken the shock propagation and decrease its velocity after propagating into the ablator plasma. Consequently, longer time duration is provided for the symmetrical target implosion driven by radiation ablation. In this paper these processes are numerically investigated by changing drive currents or varying load parameters. The simulation results show that a critical hohlraum radiation temperature is needed to provide a high enough ablation pressure to decelerate the shock, thus providing long enough time duration for the symmetric fuel compression driven by radiation ablation.

  3. Plume dynamics from UV pulsed ablation of Al and Ti

    NASA Astrophysics Data System (ADS)

    Bauer, William; Perram, Glen; Haugan, Timothy

    2016-12-01

    Pulsed laser ablation of Al and Ti with a < 3.3 J/cm2 KrF laser and Ar background pressure of up to 1 Torr was performed to study the ablated plume. Mass loss experiments revealed the number of ablated atoms per pulse increases by 30% for Ti and 20% for Al as pressure decreases from 1 Torr to vacuum. Optical emission imaging performed using a gated ICCD revealed a strong dependence of shock front parameters, defined by the Sedov-Taylor blast and classical drag models, on background pressure. Spatially resolved optical emission spectroscopy from Al I, Al II, Ti I, and Ti II revealed ion temperatures of 104 K that decreased away from the target surface along the surface normal and neutral temperatures of 103 K independent of target distance. Comparison between kinetic energy in the shock and internal excitation energy reveals that nearly 100% of the energy is partitioned into shock front kinetic energy and 1% into internal excitation.

  4. Low temperature ablation models made by pressure/vacuum application

    NASA Technical Reports Server (NTRS)

    Fischer, M. C.; Heier, W. C.

    1970-01-01

    Method developed employs high pressure combined with strong vacuum force to compact ablation models into desired conical shape. Technique eliminates vapor hazard and results in high material density providing excellent structural integrity.

  5. Ablation and Thermal Response Property Model Validation for Phenolic Impregnated Carbon Ablator

    NASA Technical Reports Server (NTRS)

    Milos, F. S.; Chen, Y.-K.

    2009-01-01

    Phenolic Impregnated Carbon Ablator was the heatshield material for the Stardust probe and is also a candidate heatshield material for the Orion Crew Module. As part of the heatshield qualification for Orion, physical and thermal properties were measured for newly manufactured material, included emissivity, heat capacity, thermal conductivity, elemental composition, and thermal decomposition rates. Based on these properties, an ablation and thermal-response model was developed for temperatures up to 3500 K and pressures up to 100 kPa. The model includes orthotropic and pressure-dependent thermal conductivity. In this work, model validation is accomplished by comparison of predictions with data from many arcjet tests conducted over a range of stagnation heat flux and pressure from 107 Watts per square centimeter at 2.3 kPa to 1100 Watts per square centimeter at 84 kPa. Over the entire range of test conditions, model predictions compare well with measured recession, maximum surface temperatures, and in depth temperatures.

  6. Modeling and Validation of Microwave Ablations with Internal Vaporization

    PubMed Central

    Chiang, Jason; Birla, Sohan; Bedoya, Mariajose; Jones, David; Subbiah, Jeyam; Brace, Christopher L.

    2014-01-01

    Numerical simulation is increasingly being utilized for computer-aided design of treatment devices, analysis of ablation growth, and clinical treatment planning. Simulation models to date have incorporated electromagnetic wave propagation and heat conduction, but not other relevant physics such as water vaporization and mass transfer. Such physical changes are particularly noteworthy during the intense heat generation associated with microwave heating. In this work, a numerical model was created that integrates microwave heating with water vapor generation and transport by using porous media assumptions in the tissue domain. The heating physics of the water vapor model was validated through temperature measurements taken at locations 5, 10 and 20 mm away from the heating zone of the microwave antenna in homogenized ex vivo bovine liver setup. Cross-sectional area of water vapor transport was validated through intra-procedural computed tomography (CT) during microwave ablations in homogenized ex vivo bovine liver. Iso-density contours from CT images were compared to vapor concentration contours from the numerical model at intermittent time points using the Jaccard Index. In general, there was an improving correlation in ablation size dimensions as the ablation procedure proceeded, with a Jaccard Index of 0.27, 0.49, 0.61, 0.67 and 0.69 at 1, 2, 3, 4, and 5 minutes. This study demonstrates the feasibility and validity of incorporating water vapor concentration into thermal ablation simulations and validating such models experimentally. PMID:25330481

  7. Adjustment of ablation shapes and subwavelength ripples based on electron dynamics control by designing femtosecond laser pulse trains

    NASA Astrophysics Data System (ADS)

    Yuan, Yanping; Jiang, Lan; Li, Xin; Wang, Cong; Lu, Yongfeng

    2012-11-01

    A quantum model is proposed to investigate femtosecond laser pulse trains processing of dielectrics by including the plasma model with the consideration of laser particle-wave duality. Central wavelengths (400 nm and 800 nm) strongly impact the surface plasmon field distribution, the coupling field intensity distribution (between the absorbed intensity and the surface plasma), and the distribution of transient localized free electron density in the material. This, in turn, significantly changes the localized transient optical/thermal properties during laser materials processing. The effects of central wavelengths on ablation shapes and subwavelength ripples are discussed. The simulation results show that: (1) ablation shapes and the spacing of subwavelength ripples can be adjusted by localized transient electron dynamics control using femtosecond laser pulse trains; (2) the adjustment of the radii of ablation shapes is stronger than that of the periods of subwavelength ripples.

  8. Saphenous Venous Ablation with Hot Contrast in a Canine Model

    SciTech Connect

    Prasad, Amit Qian Zhong; Kirsch, David; Eissa, Marna; Narra, Pavan; Lopera, Jorge; Espinoza, Carmen G.; Castaneda, Wifrido

    2008-01-15

    Purpose. To determine the feasibility, efficacy, and safety of thermal ablation of the saphenous vein with hot contrast medium. Methods. Twelve saphenous veins of 6 dogs were percutaneously ablated with hot contrast medium. In all animals, ablation was performed in the vein of one leg, followed by ablation in the contralateral side 1 month later. An occlusion balloon catheter was placed in the infragenicular segment of the saphenous vein via a jugular access to prevent unwanted thermal effects on the non-target segment of the saphenous vein. After inflation of the balloon, 10 ml of hot contrast medium was injected under fluoroscopic control through a sheath placed in the saphenous vein above the ankle. A second 10 ml injection of hot contrast medium was made after 5 min in each vessel. Venographic follow-up of the ablated veins was performed at 1 month (n = 12) and 2 months (n = 6). Results. Follow-up venograms showed that all ablated venous segments were occluded at 1 month. In 6 veins which were followed up to 2 months, 4 (66%) remained occluded, 1 (16%) was partially patent, and the remaining vein (16%) was completely patent. In these latter 2 cases, an inadequate amount of hot contrast was delivered to the lumen due to a closed balloon catheter downstream which did not allow contrast to displace blood within the vessel. Discussion. Hot contrast medium thermal ablation of the saphenous vein appears feasible, safe, and effective in the canine model, provided an adequate amount of embolization agent is used.

  9. Thermal-mechanical deformation modelling of soft tissues for thermal ablation.

    PubMed

    Li, Xin; Zhong, Yongmin; Jazar, Reza; Subic, Aleksandar

    2014-01-01

    Modeling of thermal-induced mechanical behaviors of soft tissues is of great importance for thermal ablation. This paper presents a method by integrating the heating process with thermal-induced mechanical deformations of soft tissues for simulation and analysis of the thermal ablation process. This method combines bio-heat transfer theories, constitutive elastic material law under thermal loads as well as non-rigid motion dynamics to predict and analyze thermal-mechanical deformations of soft tissues. The 3D governing equations of thermal-mechanical soft tissue deformation are discretized by using the finite difference scheme and are subsequently solved by numerical algorithms. Experimental results show that the proposed method can effectively predict the thermal-induced mechanical behaviors of soft tissues, and can be used for the thermal ablation therapy to effectively control the delivered heat energy for cancer treatment.

  10. Modeling of multi-burst mode pico-second laser ablation for improved material removal rate

    NASA Astrophysics Data System (ADS)

    Hu, Wenqian; Shin, Yung C.; King, Galen

    2010-02-01

    This paper deals with the unique phenomena occurring during the multi-burst mode picosecond (ps) laser ablation of metals through modeling and experimental studies. The two-temperature model (TTM) is used and expanded to calculate the ablation depth in the multi-burst mode. A nonlinear increment of ablation volume is found during the multi-burst laser ablation. The deactivation of ablated material and the application of temperature-dependent electron-phonon coupling are demonstrated to be important to provide reliable results. The simulation results based on this expanded laser ablation model are experimentally validated. A significant increase of ablation rate is found in the multi-burst mode, compared with the single-pulse mode under the same total fluence. This numerical model provides a physical perspective into the energy transport process during multi-burst laser ablation and can be used to study the pulse-to-pulse separation time effect on the ablation rate.

  11. Evaluating Models for Calculating Sub-Debris Ice Ablation

    NASA Astrophysics Data System (ADS)

    Nicholson, L. I.

    2014-12-01

    Debris-covered glaciers are a common feature of the mountain cryosphere, and the proportion of glacierized area that is debris-covered is increasing in many regions. Thus, in order to generate decadal or centennial projections of runoff and mass change of these glaciers it is important to be able to quantify the impact of surface debris on ice ablation. While exposed ice cliffs, ponded water and fluvial action are all important contributors to ablation within debris-covered areas, the focus here is on assessing the performance of a number of models of sub-debris melt of varying complexity. The goal is to determine the impact simplifying assumptions can be expected to have on glacier ablation over seasonal, annual and decadal timescales.

  12. Endometrial ablation

    MedlinePlus

    Hysteroscopy-endometrial ablation; Laser thermal ablation; Endometrial ablation-radiofrequency; Endometrial ablation-thermal balloon ablation; Rollerball ablation; Hydrothermal ablation; Novasure ablation

  13. Comparison of kinetic theory models of laser ablation of carbon

    SciTech Connect

    Shusser, Michael

    2010-05-15

    The paper compares the predictions of three-dimensional kinetic theory models of laser ablation of carbon. All the models are based on the moment solution of the Boltzmann equation for arbitrary strong evaporation but use different approximations. Comparison of the model predictions demonstrated that the choice of the particular model has very little influence on the results. The influence of the heat conduction from the gas to the solid phase was also found to be negligible in this problem.

  14. Experimental and computational study of complex shockwave dynamics in laser ablation plumes in argon atmosphere

    SciTech Connect

    Harilal, S. S.; Miloshevsky, G. V.; Diwakar, P. K.; LaHaye, N. L.; Hassanein, A.

    2012-08-15

    We investigated spatio-temporal evolution of ns laser ablation plumes at atmospheric pressure, a favored condition for laser-induced breakdown spectroscopy and laser-ablation inductively coupled plasma mass-spectrometry. The 1064 nm, 6 ns pulses from a Nd:YAG laser were focused on to an Al target and the generated plasma was allowed to expand in 1 atm Ar. The hydrodynamic expansion features were studied using focused shadowgraphy and gated 2 ns self-emission visible imaging. Shadowgram images showed material ejection and generation of shock fronts. A secondary shock is observed behind the primary shock during the time window of 100-500 ns with instabilities near the laser cone angle. By comparing the self-emission images obtained using fast photography, it is concluded that the secondary shocks observed in the shadowgraphy were generated by fast moving target material. The plume front estimates using fast photography exhibited reasonable agreement with data obtained from shadowgraphy at early times {<=}400 ns. However, at later times, fast photography images showed plume confinement while the shadowgraphic images showed propagation of the plume front even at greater times. The structure and dynamics of the plume obtained from optical diagnostic tools were compared to numerical simulations. We have shown that the main features of plume expansion in ambient Ar observed in the experiments can be reproduced using a continuum hydrodynamics model which provided valuable insight into the expansion dynamics and shock structure of the plasma plume.

  15. Model-based optimal planning of hepatic radiofrequency ablation.

    PubMed

    Chen, Qiyong; Müftü, Sinan; Meral, Faik Can; Tuncali, Kemal; Akçakaya, Murat

    2016-07-19

    This article presents a model-based pre-treatment optimal planning framework for hepatic tumour radiofrequency (RF) ablation. Conventional hepatic radiofrequency (RF) ablation methods rely on pre-specified input voltage and treatment length based on the tumour size. Using these experimentally obtained pre-specified treatment parameters in RF ablation is not optimal to achieve the expected level of cell death and usually results in more healthy tissue damage than desired. In this study we present a pre-treatment planning framework that provides tools to control the levels of both the healthy tissue preservation and tumour cell death. Over the geometry of tumour and surrounding tissue, we formulate the RF ablation planning as a constrained optimization problem. With specific constraints over the temperature profile (TP) in pre-determined areas of the target geometry, we consider two different cost functions based on the history of the TP and Arrhenius index (AI) of the target location, respectively. We optimally compute the input voltage variation to minimize the damage to the healthy tissue while ensuring a complete cell death in the tumour and immediate area covering the tumour. As an example, we use a simulation of a 1D symmetric target geometry mimicking the application of single electrode RF probe. Results demonstrate that compared to the conventional methods both cost functions improve the healthy tissue preservation.

  16. Mathematical Modeling of Radiofrequency Ablation for Varicose Veins

    PubMed Central

    Choi, Sun Young; Kwak, Byung Kook

    2014-01-01

    We present a three-dimensional mathematical model for the study of radiofrequency ablation (RFA) with blood flow for varicose vein. The model designed to analyze temperature distribution heated by radiofrequency energy and cooled by blood flow includes a cylindrically symmetric blood vessel with a homogeneous vein wall. The simulated blood velocity conditions are U = 0, 1, 2.5, 5, 10, 20, and 40 mm/s. The lower the blood velocity, the higher the temperature in the vein wall and the greater the tissue damage. The region that is influenced by temperature in the case of the stagnant flow occupies approximately 28.5% of the whole geometry, while the region that is influenced by temperature in the case of continuously moving electrode against the flow direction is about 50%. The generated RF energy induces a temperature rise of the blood in the lumen and leads to an occlusion of the blood vessel. The result of the study demonstrated that higher blood velocity led to smaller thermal region and lower ablation efficiency. Since the peak temperature along the venous wall depends on the blood velocity and pullback velocity, the temperature distribution in the model influences ablation efficiency. The vein wall absorbs more energy in the low pullback velocity than in the high one. PMID:25587351

  17. Femtosecond laser ablation of CuxZr1-x bulk metallic glasses: A molecular dynamics study

    NASA Astrophysics Data System (ADS)

    Marinier, Sébastien; Lewis, Laurent J.

    2015-11-01

    Molecular-dynamics simulations combined with a two-temperature model are used to study laser ablation in CuxZr1-x (x =0.33 ,0.50 ,0.67 ) metallic glasses as well as crystalline CuZr2 in the C11b (MoSi2) structure. Ablation thresholds are found to be 430 ±10 ,450 ±10 ,510 ±10 , and 470 ±10 J/m 2 for a-Cu2Zr , a-CuZr, a-CuZr2, and c-CuZr2, respectively. The larger threshold in amorphous CuZr2 results from a weaker electron-phonon coupling and thus longer electron-ion equilibration time. We observe that the velocity of the pressure waves in the amorphous samples is not affected by the fluence, in contrast to the crystal; this is due to differences in the behavior of the shear modulus with increasing pressure. The heat-affected zone in the different systems is characterized in terms of the melting depth as well as inelastic deformations. The melting depth is found to be smaller in the crystal than in the amorphous targets because of its higher melting temperature. The inelastic deformations are investigated in terms of the von Mises shear strain invariant ηMises; the homogeneous nucleation of shear transformation zones is observed in the glass as reported in previous theoretical and experimental studies. The coalescence of the shear transformation zones is also found at higher fluence.

  18. Modeling of Heat Transfer and Ablation of Refractory Material Due to Rocket Plume Impingement

    NASA Technical Reports Server (NTRS)

    Harris, Michael F.; Vu, Bruce T.

    2012-01-01

    CR Tech's Thermal Desktop-SINDA/FLUINT software was used in the thermal analysis of a flame deflector design for Launch Complex 39B at Kennedy Space Center, Florida. The analysis of the flame deflector takes into account heat transfer due to plume impingement from expected vehicles to be launched at KSC. The heat flux from the plume was computed using computational fluid dynamics provided by Ames Research Center in Moffet Field, California. The results from the CFD solutions were mapped onto a 3-D Thermal Desktop model of the flame deflector using the boundary condition mapping capabilities in Thermal Desktop. The ablation subroutine in SINDA/FLUINT was then used to model the ablation of the refractory material.

  19. Modeling of laser ablation processes for thin film deposition of materials^

    NASA Astrophysics Data System (ADS)

    Leboeuf, Jean-Noel G.

    1996-05-01

    The laser ablation technique for pulsed laser deposition of thin films has proven extremely successful at growing high-quality films of very complex and novel materials, such as high temperature superconducting compounds and diamond-like carbon. The physics ingredients involved are quite complicated given that they include laser-solid interactions at the target, plasma formation off the target, vapor/plasma plume transport towards the deposition substrate, and plume-solid interactions at the substrate. A global physics and computational approach to the laser ablation process has been taken which relies on thermal models to describe laser-solid interactions; on kinetic models of plasma formation in the ablated plume; on an assorted variety of hydrodynamic, gas dynamic and collisional models of plume transport in near vacuum and in a higher pressure background gas; and on molecular dynamics methods to treat plume-substrate interactions. We have chosen to concentrate mostly on silicon to validate our models against experiments. The application of our physics results does however go beyond silicon, given the universality of many experimental observations, such as plume splitting for instance, for a wide variety of laser-ablated materials, be it carbon, copper, yttrium or YBCO. ^* In collaboration with K. R. Chen, J. M. Donato, D. B. Geohegan, C. L. Liu, A. A. Puretzky and R. F. Wood, Oak Ridge National Laboratory, Oak Ridge, TN 37831-8071 ^ Work supported by Oak Ridge National Laboratory Directed Research and Development (LDRD) Fund under U.S Department of Energy contract No. DE-AC05-96OR22464 with Lockheed Martin Energy Systems, Inc.

  20. Finite-element model for endometrial ablation systems

    NASA Astrophysics Data System (ADS)

    Ryan, Thomas P.; Platt, Robert C.; Humphries, Stanley, Jr.

    1998-04-01

    Ablation of the endometrium has become a viable treatment for dysfunctional bleeding of the uterus in women. Surgical applications of thermal ablation utilized a rolling electrode to ablate the inner uterine lining, but required practiced surgical skills and made it difficult to assess subsurface damage. Recently, various energy systems have been applied to the endometrium such as lasers, microwaves, RF electrodes, hot water balloons, and cryotherapy. A finite element model is presented to compare a multi-electrode, multiplexed RF device with a balloon containing hot fluid. The temperature fields in the uterine wall are plotted over time for various blood flow values. Assumptions of constant electrical conductivity are compared to temperature- dependent electrical conductivity. Temperatures are shown to be a maximum of about 10 - 20 degree(s)C higher when varying electrical conductivity is used. Results are also shown for cases with a 2 mm blood vessel in the field and how each device adjusts its operation to compensate for this heat sink. Damage integral results will be shown according to the time and temperature of the treatments.

  1. Modeling of Interactions of Ablated Plumes

    DTIC Science & Technology

    2008-02-01

    C). B. The governing equations and the numerical method The developed model is based on the compressible two-species Euler and Navier - Stokes equations ...heat transfer at 20 km are obtained by solving the inviscid Euler and viscous Navier - Stokes equations (see Fig. 2). Note that in this and subsequent...altitude 20kmn: a-b) plume concentration -t 45l) and c-d) heat transfer coefficient, where a,c) Euler equations and b,d) Navier - Stokes equations . III

  2. Epicardial ablation guidance using coronary arterial models and live fluoroscopic overlay registrations

    NASA Astrophysics Data System (ADS)

    Manzke, R.; Thiagalingam, A.; Movassaghi, B.; d'Avila, A.; Reddy, V. Y.; Chan, R. C.

    2008-03-01

    Knowledge of patient-specific cardiac anatomy is required for catheter-based ablation in epicardial ablation procedures such as ventricular tachycardia (VT) ablation interventions. In particular, knowledge of critical structures such as the coronary arteries is essential to avoid collateral damage. In such ablation procedures, ablation catheters are brought in via minimally-invasive subxiphoid access. The catheter is then steered to ablation target sites on the left ventricle (LV). During the ablation and catheter navigation it is of vital importance to avoid damage of coronary structures. Contrast-enhanced rotational X-ray angiography of the coronary arteries delivers a 3D impression of the anatomy during the time of intervention. Vessel modeling techniques have been shown to be able to deliver accurate 3D anatomical models of the coronary arteries. To simplify epicardial navigation and ablation, we propose to overlay coronary arterial models, derived from rotational X-ray angiography and vessel modeling, onto real-time X-ray fluoroscopy. In a preclinical animal study, we show that overlay of intra-operatively acquired 3D arterial models onto X-ray helps to place ablation lesions at a safe distance from coronary structures. Example ablation lesions have been placed based on the model overlay at reasonable distances between key arterial vessels and on top of marginal branches.

  3. Analysis of laser ablation dynamics of CFRP in order to reduce heat affected zone

    NASA Astrophysics Data System (ADS)

    Sato, Yuji; Tsukamoto, Masahiro; Nariyama, Tatsuya; Nakai, Kazuki; Matsuoka, Fumihiro; Takahashi, Kenjiro; Masuno, Shinichiro; Ohkubo, Tomomasa; Nakano, Hitoshi

    2014-03-01

    A carbon fiber reinforced plastic [CFRP], which has high strength, light weight and weather resistance, is attractive material applied for automobile, aircraft and so on. The laser processing of CFRP is one of suitable way to machining tool. However, thermal affected zone was formed at the exposure part, since the heat conduction property of the matrix is different from that of carbon fiber. In this paper, we demonstrated that the CFRP plates were cut with UV nanosecond laser to reduce the heat affected zone. The ablation plume and ablation mass were investigated by laser microscope and ultra-high speed camera. Furthermore, the ablation model was constructed by energy balance, and it was confirmed that the ablation rate was 0.028 μg/ pulse in good agreement with the calculation value of 0.03 μg/ pulse.

  4. X-ray ablation measurements and modeling for ICF applications

    SciTech Connect

    Anderson, Andrew Thomas

    1996-09-01

    X-ray ablation of material from the first wall and other components of an ICF (Inertial Confinement Fusion) chamber is a major threat to the laser final optics. Material condensing on these optics after a shot may cause damage with subsequent laser shots. To ensure the successful operation of the ICF facility, removal rates must be predicted accurately. The goal for this dissertation is to develop an experimentally validated x-ray response model, with particular application to the National Ignition Facility (NIF). Accurate knowledge of the x-ray and debris emissions from ICF targets is a critical first step in the process of predicting the performance of the target chamber system. A number of 1-D numerical simulations of NIF targets have been run to characterize target output in terms of energy, angular distribution, spectrum, and pulse shape. Scaling of output characteristics with variations of both target yield and hohlraum wall thickness are also described. Experiments have been conducted at the Nova laser on the effects of relevant x-ray fluences on various materials. The response was diagnosed using post-shot examinations of the surfaces with scanning electron microscope and atomic force microscope instruments. Judgments were made about the dominant removal mechanisms for each material. Measurements of removal depths were made to provide data for the modeling. The finite difference ablation code developed here (ABLATOR) combines the thermomechanical response of materials to x-rays with models of various removal mechanisms. The former aspect refers to energy deposition in such small characteristic depths (~ micron) that thermal conduction and hydrodynamic motion are significant effects on the nanosecond time scale. The material removal models use the resulting time histories of temperature and pressure-profiles, along with ancillary local conditions, to predict rates of surface vaporization and the onset of conditions that would lead to spallation.

  5. Planar laser-driven ablation model for nonlocalized absorption

    SciTech Connect

    Dahmani, F.; Kerdja, T. )

    1991-05-01

    A model for planar laser-driven ablation is presented. Nonlocalized inverse bremsstrahlung absorption of laser energy at a density {ital n}{sub 1}{lt}{ital n}{sub {ital c}} is assumed. A steady-state solution in the conduction zone is joined to a rarefaction wave in the underdense plasma. The calculations relate all steady-state fluid quantities to only the material, absorbed intensity, and laser wavelength. The theory agrees well with results from a computer hydrodynamics code MEDUSA (Comput. Phys. Commun. {bold 7}, 271 (1974)) and experiments.

  6. Dynamic Lung Tumor Tracking for Stereotactic Ablative Body Radiation Therapy

    PubMed Central

    Kunos, Charles A.; Fabien, Jeffrey M.; Shanahan, John P.; Collen, Christine; Gevaert, Thierry; Poels, Kenneth; Van den Begin, Robbe; Engels, Benedikt; De Ridder, Mark

    2015-01-01

    Physicians considering stereotactic ablative body radiation therapy (SBRT) for the treatment of extracranial cancer targets must be aware of the sizeable risks for normal tissue injury and the hazards of physical tumor miss. A first-of-its-kind SBRT platform achieves high-precision ablative radiation treatment through a combination of versatile real-time imaging solutions and sophisticated tumor tracking capabilities. It uses dual-diagnostic kV x-ray units for stereoscopic open-loop feedback of cancer target intrafraction movement occurring as a consequence of respiratory motions and heartbeat. Image-guided feedback drives a gimbaled radiation accelerator (maximum 15 x 15 cm field size) capable of real-time ±4 cm pan-and-tilt action. Robot-driven ±60° pivots of an integrated ±185° rotational gantry allow for coplanar and non-coplanar accelerator beam set-up angles, ultimately permitting unique treatment degrees of freedom. State-of-the-art software aids real-time six dimensional positioning, ensuring irradiation of cancer targets with sub-millimeter accuracy (0.4 mm at isocenter). Use of these features enables treating physicians to steer radiation dose to cancer tumor targets while simultaneously reducing radiation dose to normal tissues. By adding respiration correlated computed tomography (CT) and 2-[18F] fluoro-2-deoxy-ᴅ-glucose (18F-FDG) positron emission tomography (PET) images into the planning system for enhanced tumor target contouring, the likelihood of physical tumor miss becomes substantially less1. In this article, we describe new radiation plans for the treatment of moving lung tumors. PMID:26131774

  7. Molecular Dynamics Investigations of the Ablator/Fuel Interface during Early Stages of Inertial Confinement Fusion

    NASA Astrophysics Data System (ADS)

    Stanton, Liam; Glosli, James; Murillo, Michael

    2016-10-01

    At the National Ignition Facility, high-powered laser beams are used to compress a small target to generate fusion reactions. A critical issue in achieving this is the understanding of mix at the ablator/fuel interface. Mixing occurs at various length scales, ranging from atomic inter-species diffusion to hydrodynamic instabilities. Because the interface is preheated by energy from the incoming shock, it is important to understand the dynamics before the shock arrives. The interface is in the warm dense matter phase with a deuterium/tritium fuel mixture on one side and a plastic mixture on the other. We would like to understand various aspects of the evolution, including the state of the interface when the main shock arrives, the role of electric field generation at the interface, and the character and time scales for diffusion. We present a multiscale approach to model these processes, which combines molecular dynamics to simulate the ionic degrees of freedom with orbital-free density functional theory to calculate the electronic structure. Simulation results are presented and connections to hydrodynamic models are discussed. This work is performed under the auspices of the U. S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  8. On the Properties of Plastic Ablators in Laser-Driven Material Dynamics Experiments

    SciTech Connect

    Swift, D C; Kraus, R G

    2007-11-15

    Radiation hydrodynamics simulations were used to study the effect of plastic ablators in laser-driven shock experiments. The sensitivity to composition and equation of state was found to be 5-10% in ablation pressure. As was found for metals, a laser pulse of constant irradiance gave a pressure history which decreased by several percent per nanosecond. The pressure history could be made more constant by adjusting the irradiance history. The impedance mismatch with the sample gave an increase o(100%) in the pressure transmitted into the sample, for a reduction of several tens of percent in the duration of the peak load applied to the sample, and structured the release history by adding a release step to a pressure close to the ablation pressure. Algebraic relations were found between the laser pulse duration, the ablator thickness, and the duration of the peak pressure applied to the sample, involving quantities calculated from the equations of state of the ablator and sample using shock dynamics.

  9. Ablation plume structure and dynamics in ambient gas observed by laser-induced fluorescence imaging spectroscopy

    NASA Astrophysics Data System (ADS)

    Miyabe, M.; Oba, M.; Iimura, H.; Akaoka, K.; Khumaeni, A.; Kato, M.; Wakaida, I.

    2015-08-01

    The dynamic behavior of an ablation plume in ambient gas has been investigated by laser-induced fluorescence imaging spectroscopy. The second harmonic beam from an Nd:YAG laser (0.5-6 J/cm2) was focused on a sintered oxide pellet or a metal chip of gadolinium. The produced plume was subsequently intersected with a sheet-shaped UV beam from a dye laser so that time-resolved fluorescence images were acquired with an intensified CCD camera at various delay times. The obtained cross-sectional images of the plume indicate that the ablated ground state atoms and ions of gadolinium accumulate in a hemispherical contact layer between the plume and the ambient gas, and a cavity containing a smaller density of ablated species is formed near the center of the plume. At earlier expansion stage, another luminous component also expands in the cavity so that it coalesces into the hemispherical layer. The splitting and coalescence for atomic plume occur later than those for ionic plume. Furthermore, the hemispherical layer of neutral atoms appears later than that of ions; however, the locations of the layers are nearly identical. This coincidence of the appearance locations of the layers strongly suggests that the neutral atoms in the hemispherical layer are produced as a consequence of three-body recombination of ions through collisions with gas atoms. The obtained knowledge regarding plume expansion dynamics and detailed plume structure is useful for optimizing the experimental conditions for ablation-based spectroscopic analysis.

  10. Dynamics of plasma expansion and shockwave formation in femtosecond laser-ablated aluminum plumes in argon gas at atmospheric pressures

    SciTech Connect

    Miloshevsky, Alexander; Harilal, Sivanandan S.; Miloshevsky, Gennady Hassanein, Ahmed

    2014-04-15

    Plasma expansion with shockwave formation during laser ablation of materials in a background gasses is a complex process. The spatial and temporal evolution of pressure, temperature, density, and velocity fields is needed for its complete understanding. We have studied the expansion of femtosecond (fs) laser-ablated aluminum (Al) plumes in Argon (Ar) gas at 0.5 and 1 atmosphere (atm). The expansion of the plume is investigated experimentally using shadowgraphy and fast-gated imaging. The computational fluid dynamics (CFD) modeling is also carried out. The position of the shock front measured by shadowgraphy and fast-gated imaging is then compared to that obtained from the CFD modeling. The results from the three methods are found to be in good agreement, especially during the initial stage of plasma expansion. The computed time- and space-resolved fields of gas-dynamic parameters have provided valuable insights into the dynamics of plasma expansion and shockwave formation in fs-pulse ablated Al plumes in Ar gas at 0.5 and 1 atm. These results are compared to our previous data on nanosecond (ns) laser ablation of Al [S. S. Harilal et al., Phys. Plasmas 19, 083504 (2012)]. It is observed that both fs and ns plumes acquire a nearly spherical shape at the end of expansion in Ar gas at 1 atm. However, due to significantly lower pulse energy of the fs laser (5 mJ) compared to pulse energy of the ns laser (100 mJ) used in our studies, the values of pressure, temperature, mass density, and velocity are found to be smaller in the fs laser plume, and their time evolution occurs much faster on the same time scale. The oscillatory shock waves clearly visible in the ns plume are not observed in the internal region of the fs plume. These experimental and computational results provide a quantitative understanding of plasma expansion and shockwave formation in fs-pulse and ns-pulse laser ablated Al plumes in an ambient gas at atmospheric pressures.

  11. Modeling and Simulation of Ablation-Controlled Plasmas

    NASA Astrophysics Data System (ADS)

    Kundrapu, Madhusudhan N.

    Ablation and plasma formation in high energy laser target interactions and arc discharges are studied numerically. Each of the two processes is modeled separately due to the type of energy source and the resulting flow eld. Ablation of the target material and plasma formation are coupled to obtain evaporation rate, temperature distribution, velocity eld, and species concentration self-consistently. Laser ablation is studied in the perspective of directed energy applications, where beam size varies from few centimeters to tens of centimeters with energies extending up to 10 kW/cm2. Because of this high energy deposition, the evaporated material expands to supersonic speeds into the free space. Due to the large spot sizes and associated supersonic flow, one dimensional Euler equations are considered to be sufficient for modeling the plume. Instead, more emphasis was given to evaporation model, by introducing Knudsen layer kinetics at the plume target interface, and plasma shielding. The evaporation rate is validated with results from the experiments and simulations are carried out to nd the in fluence of laser beam frequency on evaporation rates. The evaporation model used in this work is found to be more accurate than the widely used model based on sonic speed assumption. The optimum beam wavelength for Al surfaces is found to be 850 nm. Attenuation of telemetry data by plasma is a concern for the testing of directed energy systems. Electrostatic approach for the mitigation of communication attenuation is analyzed to obtain the fluency limits up to which the approach can be implemented. It is found from sheath calculations that uninterrupted telemetry can be achieved through Al plasma for fluences below 4 J/cm2 at a background pressure of 1 atm, using a maximum bias voltage of 10 kV . Arc discharge ablation is modeled for the synthesis of nanoparticles. The electric arc generated between the electrodes, placed inside a Helium chamber, evaporates the catalyst

  12. Gas-dynamic acceleration of laser-ablation plumes: Hyperthermal particle energies under thermal vaporization

    SciTech Connect

    Morozov, A. A.; Evtushenko, A. B.; Bulgakov, A. V.

    2015-02-02

    The expansion of a plume produced by low-fluence laser ablation of graphite in vacuum is investigated experimentally and by direct Monte Carlo simulations in an attempt to explain hyperthermal particle energies for thermally vaporized materials. We demonstrate that the translation energy of neutral particles, ∼2 times higher than classical expectations, is due to two effects, hydrodynamic plume acceleration into the forward direction and kinetic selection of fast particles in the on-axis region. Both effects depend on the collision number within the plume and on the particles internal degrees of freedom. The simulations allow ablation properties to be evaluated, such as ablation rate and surface temperature, based on time-of-flight measurements. Available experimental data on kinetic energies of various laser-produced particles are well described by the presented model.

  13. Hydrodynamic model for ultra-short pulse ablation of hard dental tissue

    SciTech Connect

    London, R.A.; Bailey, D.S.; Young, D.A.; Alley, W.E.; Feit, M.D.; Rubenchik, A.M.; Neev, J.

    1996-02-29

    A computational model for the ablation of tooth enamel by ultra-short laser pulses is presented. The role of simulations using this model in designing and understanding laser drilling systems is discussed. Pulses of duration 300 fsec and intensity greater than 10{sup 12} W/cm{sup 2} are considered. Laser absorption proceeds via multi-photon initiated plasma mechanism. The hydrodynamic response is calculated with a finite difference method, using an equation of state constructed from thermodynamic functions including electronic, ion motion, and chemical binding terms. Results for the ablation efficiency are presented. An analytic model describing the ablation threshold and ablation depth is presented. Thermal coupling to the remaining tissue and long-time thermal conduction are calculated. Simulation results are compared to experimental measurements of the ablation efficiency. Desired improvements in the model are presented.

  14. Comparison of percutaneous cryoablation with microwave ablation in a porcine liver model.

    PubMed

    Niu, Lizhi; Li, Jialiang; Zeng, Jianying; Zhou, Liang; Wang, Song; Zhou, Xulong; Sheng, Lin; Chen, Jibing; Xu, Kecheng

    2014-04-01

    We compared imaging and pathological changes between argon-helium cryosurgical (AH) and microwave (MW) ablation in a porcine liver model. Immediately after ablation, computed tomography (CT) imaging showed that the area affected by MW ablation was considerably greater than that affected by AH ablation; moreover, the surface area of necrotic tissue was considerably greater in the AH group, whereas the depth of the necrotic area was similar. Seven days after ablation, the affected area had not changed much in the AH group, but it had significantly increased in the MW group; similarly, the surface and depth of the necrotic areas had not changed much in the AH group, but they had increased significantly in the MW group. The pathological findings showed similar definitive areas for both groups at both time points. The findings indicated that long time after both therapies, complete tissue necrosis can be achieved, but the extent and depth of necrosis differ: necrosis foci after AH ablation could be predicted by ice ball under CT image, and necrosis foci after MW ablation will increase obviously. MW ablation might therefore be suitable for tumors with a larger volume and simple anatomical structures, and AH ablation might be suitable for tumors with complex anatomical structures or those located near important organs. These two methods could therefore be used in combination in clinical settings, but details of the procedure need to be studied.

  15. Modeling of beam-target interaction during pulsed electron beam ablation of graphite: Case of melting

    NASA Astrophysics Data System (ADS)

    Ali, Muddassir; Henda, Redhouane

    2017-02-01

    A one-dimensional thermal model based on a two-stage heat conduction equation is employed to investigate the ablation of graphite target during nanosecond pulsed electron beam ablation. This comprehensive model accounts for the complex physical phenomena comprised of target heating, melting and vaporization upon irradiation with a polyenergetic electron beam. Melting and vaporization effects induced during ablation are taken into account by introducing moving phase boundaries. Phase transition induced during ablation is considered through the temperature dependent thermodynamic properties of graphite. The effect of electron beam efficiency, power density, and accelerating voltage on ablation is analyzed. For an electron beam operating at an accelerating voltage of 15 kV and efficiency of 0.6, the model findings show that the target surface temperature can reach up to 7500 K at the end of the pulse. The surface begins to melt within 25 ns from the pulse start. For the same process conditions, the estimated ablation depth and ablated mass per unit area are about 0.60 μm and 1.05 μg/mm2, respectively. Model results indicate that ablation takes place primarily in the regime of normal vaporization from the surface. The results obtained at an accelerating voltage of 15 kV and efficiency factor of 0.6 are satisfactorily in good accordance with available experimental data in the literature.

  16. Experimental measurement of ablation effects in plasma armature railguns

    SciTech Connect

    Parker, J.V.; Parsons, W.M.

    1986-01-01

    Experimental evidence supporting the importance of ablation in plasma armature railguns is presented. Experiments conducted using the HYVAX and MIDI-2 railguns are described. Several indirect effects of ablation are identified from the experimental results. An improved ablation model of plasma armature dynamics is proposed which incorporates the restrike process.

  17. Higher Order Chemistry Models in the CFD Simulation of Laser-Ablated Carbon Plumes

    NASA Technical Reports Server (NTRS)

    Scott, C. D.; Greendyke, R. B.; Creel, J. R.; Payne, B. T.

    2005-01-01

    Production of single-walled carbon nanotubes (SWNT) has taken place for a number of years and by a variety of methods such-as laser ablation, chemical vapor deposition, and arc-jet ablation. Yet, little is actually understood about the exact chemical kinetics and processes that occur in SWNT formation. In recent time, NASA Johnson Space Center has devoted a considerable effort to the experimental evaluation of the laser ablation production process for SWNT originally developed at Rice University. To fully understand the nature of the laser ablation process it is necessary to understand the development of the carbon plume dynamics within the laser ablation oven. The present work is a continuation of previous studies into the efforts to model plume dynamics using computational fluid dynamics (CFD). The ultimate goal of the work is to improve understanding of the laser ablation process, and through that improved understanding, refine the laser ablation production of SWNT. Fig. 1 shows a basic schematic of the laser-ablation oven at NASA-JSC. Construction of the facility is simple in concept. Two concentric quartz tubes of 1.5 mm thickness form the inner and outer tubes with inside diameters of 2.2 and 5.08 cm respectively. At one end of the inner tube are located two 60 Hz pulsed lasers operating at 1064 nm and 532 nm wavelength with beam diameters of 5 mm aligned coaxially with the longitudinal axis of the inner quartz tube. For standard nanotube production runs, a 10 ns 532 nm pulse is followed 50 ns later by a 10 ns 1064 nm pulse. Each pulse is of 300 mJ energy. A target of carbon graphite with approximately 1% nickel and cobalt catalysts is located at the other end of the inner quartz tube. In the ordinary processing of SWNT, a base flow of 100 sccm of argon is maintained from the laser location and exits past the carbon target at a pressure of 66.7 kPa. These conditions yield a baseline mass flow through the chamber of 2.723x10(exp -6)kg/s of argon. The whole

  18. INTERACTION OF LASER RADIATION WITH MATTER. LASER PLASMA: Laser ablation plume dynamics in nanoparticle synthesis

    NASA Astrophysics Data System (ADS)

    Osipov, V. V.; Platonov, V. V.; Lisenkov, V. V.

    2009-06-01

    The dynamics of the plume ejected from the surface of solid targets (YSZ, Nd:YAG and graphite) by a CO2 laser pulse with a duration of ~500 μs (at the 0.03 level), energy of 1.0-1.3 J and peak power of 6-7 kW have been studied using high-speed photography of the plume luminescence and shadow. The targets were used to produce nanopowders by laser evaporation. About 200 μs after termination of the pulse, shadowgraph images of the plumes above the YSZ and Nd:YAG targets showed dark straight tracks produced by large particles. The formation of large (~10 μm) particles is tentatively attributed to cracking of the solidified melt at the bottom of the ablation crater. This is supported by the fact that no large particles are ejected from graphite, which sublimes without melting. Further support to this hypothesis is provided by numerical 3D modelling of melt cooling in craters produced by laser pulses of different shapes.

  19. Femtosecond laser ablation dynamics of fused silica extracted from oscillation of time-resolved reflectivity

    SciTech Connect

    Kumada, Takayuki Akagi, Hiroshi; Itakura, Ryuji; Otobe, Tomohito; Yokoyama, Atsushi

    2014-03-14

    Femtosecond laser ablation dynamics of fused silica is examined via time-resolved reflectivity measurements. After optical breakdown was caused by irradiation of a pump pulse with fluence F{sub pump} = 3.3–14.9 J/cm{sup 2}, the reflectivity oscillated with a period of 63 ± 2 ps for a wavelength λ = 795 nm. The period was reduced by half for λ = 398 nm. We ascribe the oscillation to the interference between the probe pulses reflected from the front and rear surfaces of the photo-excited molten fused silica layer. The time-resolved reflectivity agrees closely with a model comprising a photo-excited layer which expands due to the formation of voids, and then separates into two parts, one of which is left on the sample surface and the other separated as a molten thin layer from the surface by the spallation mechanism. Such oscillations were not observed in the reflectivity of soda-lime glass. Whether the reflectivity oscillates or not probably depends on the layer viscosity while in a molten state. Since viscosity of the molten fused silica is several orders of magnitude higher than that of the soda-lime glass at the same temperature, fused silica forms a molten thin layer that reflects the probe pulse, whereas the soda-lime glass is fragmented into clusters.

  20. Method for evaluation of predictive models of microwave ablation via post-procedural clinical imaging

    NASA Astrophysics Data System (ADS)

    Collins, Jarrod A.; Brown, Daniel; Kingham, T. Peter; Jarnagin, William R.; Miga, Michael I.; Clements, Logan W.

    2015-03-01

    Development of a clinically accurate predictive model of microwave ablation (MWA) procedures would represent a significant advancement and facilitate an implementation of patient-specific treatment planning to achieve optimal probe placement and ablation outcomes. While studies have been performed to evaluate predictive models of MWA, the ability to quantify the performance of predictive models via clinical data has been limited to comparing geometric measurements of the predicted and actual ablation zones. The accuracy of placement, as determined by the degree of spatial overlap between ablation zones, has not been achieved. In order to overcome this limitation, a method of evaluation is proposed where the actual location of the MWA antenna is tracked and recorded during the procedure via a surgical navigation system. Predictive models of the MWA are then computed using the known position of the antenna within the preoperative image space. Two different predictive MWA models were used for the preliminary evaluation of the proposed method: (1) a geometric model based on the labeling associated with the ablation antenna and (2) a 3-D finite element method based computational model of MWA using COMSOL. Given the follow-up tomographic images that are acquired at approximately 30 days after the procedure, a 3-D surface model of the necrotic zone was generated to represent the true ablation zone. A quantification of the overlap between the predicted ablation zones and the true ablation zone was performed after a rigid registration was computed between the pre- and post-procedural tomograms. While both model show significant overlap with the true ablation zone, these preliminary results suggest a slightly higher degree of overlap with the geometric model.

  1. Ablation dynamics in wire array Z-pinches under modifications on global magnetic field topology

    SciTech Connect

    Veloso, Felipe Muñoz-Cordovez, Gonzalo; Donoso-Tapia, Luis; Valenzuela-Villaseca, Vicente; Favre, Mario; Wyndham, Edmund; Suzuki-Vidal, Francisco; Swadling, George; Chittenden, Jeremy

    2015-07-15

    The dynamics of ablation streams and precursor plasma in cylindrical wire array Z-pinches under temporal variations of the global magnetic field topology is investigated through experiments and numerical simulations. The wire arrays in these experiments are modified by replacing a pair of consecutive wires with wires of a larger diameter. This modification leads to two separate effects, both of which impact the dynamics of the precursor plasma; firstly, current is unevenly distributed between the wires and secondly, the thicker wires take longer to fully ablate. The uneven distribution of current is evidenced in the experiments by the drift of the precursor off axis due to a variation in the global magnetic field topology which modifies the direction of the ablation streams tracking the precursor position. The variation of the global magnetic field due to the presence of thick wires is studied with three-dimensional magnetohydrodynamic (MHD) simulations, showing that the global field changes from the expected toroidal field to a temporally variable topology after breakages appear in the thin wires. This leads to an observed acceleration of the precursor column towards the region closer to the thick wires and later, when thick wires also present breakages, it continues moving away from the original array position as a complicated and disperse object subject to MHD instabilities.

  2. Numerical models to evaluate the temperature increase induced by ex vivo microwave thermal ablation.

    PubMed

    Cavagnaro, M; Pinto, R; Lopresto, V

    2015-04-21

    Microwave thermal ablation (MTA) therapies exploit the local absorption of an electromagnetic field at microwave (MW) frequencies to destroy unhealthy tissue, by way of a very high temperature increase (about 60 °C or higher). To develop reliable interventional protocols, numerical tools able to correctly foresee the temperature increase obtained in the tissue would be very useful. In this work, different numerical models of the dielectric and thermal property changes with temperature were investigated, looking at the simulated temperature increments and at the size of the achievable zone of ablation. To assess the numerical data, measurement of the temperature increases close to a MTA antenna were performed in correspondence with the antenna feed-point and the antenna cooling system, for increasing values of the radiated power. Results show that models not including the changes of the dielectric and thermal properties can be used only for very low values of the power radiated by the antenna, whereas a good agreement with the experimental values can be obtained up to 20 W if water vaporization is included in the numerical model. Finally, for higher power values, a simulation that dynamically includes the tissue's dielectric and thermal property changes with the temperature should be performed.

  3. Numerical models to evaluate the temperature increase induced by ex vivo microwave thermal ablation

    NASA Astrophysics Data System (ADS)

    Cavagnaro, M.; Pinto, R.; Lopresto, V.

    2015-04-01

    Microwave thermal ablation (MTA) therapies exploit the local absorption of an electromagnetic field at microwave (MW) frequencies to destroy unhealthy tissue, by way of a very high temperature increase (about 60 °C or higher). To develop reliable interventional protocols, numerical tools able to correctly foresee the temperature increase obtained in the tissue would be very useful. In this work, different numerical models of the dielectric and thermal property changes with temperature were investigated, looking at the simulated temperature increments and at the size of the achievable zone of ablation. To assess the numerical data, measurement of the temperature increases close to a MTA antenna were performed in correspondence with the antenna feed-point and the antenna cooling system, for increasing values of the radiated power. Results show that models not including the changes of the dielectric and thermal properties can be used only for very low values of the power radiated by the antenna, whereas a good agreement with the experimental values can be obtained up to 20 W if water vaporization is included in the numerical model. Finally, for higher power values, a simulation that dynamically includes the tissue’s dielectric and thermal property changes with the temperature should be performed.

  4. Modeling Ablation of Fibrous Materials from Bulk to Knudsen Regime

    NASA Technical Reports Server (NTRS)

    Lachaud, Jean; Mansour, Nagi N.

    2008-01-01

    Material-environment interactions are analyzed at microscopic scale to explain the lower than expected density observed by post-flight analysis of the char layer on the Stardust shield. Mass transfer, ablation (oxidation), and surface recession of fibrous material is simulated in 3D using a Monte-Carlo simulation tool. Ablation is found to occur either at the surface or in volume depending on Knudsen and Thiele number values. This study supports the idea of volume ablation followed by possible carbon fiber spallation that may explain post-flight analyses.

  5. Role of shielding in modelling cryogenic deuterium pellet ablation

    NASA Astrophysics Data System (ADS)

    Gál, K.; Belonohy, É.; Kocsis, G.; Lang, P. T.; Veres, G.; ASDEX Upgrade Team

    2008-08-01

    For the better characterization of pellet ablation, the numerical LLP code has been enhanced by combining two relevant shielding mechanisms: that of the spherically expanding neutral cloud surrounding the pellet and that of the field elongated ionized material forming a channel flow. In contrast to our expectation the presence of the channel flow can increase the ablation rate although it reduces the heat flux travelling through it. The contribution of the different shielding effect in the ablation process is analysed for several pellet and plasma parameters and an ablation rate scaling is presented based on simple regression in the ASDEX Upgrade pellet and plasma parameter range. Finally the simulated results are compared with experimental data from typical ASDEX Upgrade discharges.

  6. Multiscale Modeling of Ablation and Pyrolysis in PICA-Like materials

    NASA Technical Reports Server (NTRS)

    Lachaud, Jean; Mansour, Nagi N.

    2008-01-01

    During atmospheric entry of planetary probes, the thermal protection system (TIPS) of the probe is exposed to high temperatures under low pressures. In these conditions, carbonous fibrous TIPS materials may undergo oxidation leading to mass loss and wall recession called ablation. This work aims to improve the understanding of material/environment interactions through a study of the coupling between oxygen transport in the Knudsen regime, heterogeneous oxidation of carbon, and surface recession. A 3D Random Walk Monte Carlo simulation tool is used for this study. The fibrous architecture of a model material, consisting of high porosity random array of carbon fibers, is numerically represented on a 3D Cartesian grid. Mass transport in the Knudsen regime from the boundary layer to the surface, and inside this porous material is simulated by random walk. A reaction probability is used to simulate the heterogeneous oxidation reaction. The surface recession of the fibers is followed by front tracking using a simplified marching cube approach. The output data of the simulations are ablation velocity and dynamic evolution of the material porosity. A parametric study is carried out to analyze the material behavior as a function of Knudsen number for the porous media (length of the mean free path compared to the mean pore diameter) and the intrinsic reactivity of the carbon fibers. The model is applied to Stardust mission reentry conditions and explains the unexpected behavior of the TIPS material that underwent mass loss in volume.

  7. Non-ablative hyperthermic mesenchymal regeneration: a proposed mechanism of action based on the Vivev model

    NASA Astrophysics Data System (ADS)

    Vos, Jeffrey A.; Livengood, Ryan H.; Jessop, Morris; Coad, James E.

    2011-03-01

    Novel non-ablative hyperthermic medical devices are currently being developed, in association with cryogen surface cooling, to rejuvenate tissues without collagen scarring. These devices have been designed to remodel skin, manage urinary stress incontinence, and more recently, treat vaginal laxity. In contrast to the thermal injury and reparative healing associated with higher energy ablation systems, these lower energy non-ablative systems are designed to subtly modify the collagen, stimulate the fibroblasts, and maintain a functional tissue architecture that subsequently promotes tissue rejuvenation and restoration. While these devices have primarily relied on clinical outcome questionnaires and satisfaction surveys to establish efficacy, a physiologic explanation for the induced tissue changes and tightening has not been well documented. Recent histology studies, using the Viveve ovine vaginal treatment model, have identified changes that propose both a mechanism of action and a tissue remodeling timeline for such non-ablative hyperthermic devices. The Viveve model results are consistent with subtle connective tissue changes leading to fibroblast stimulation and subsequent collagen replacement and augmentation. Unlike tissue ablation devices that cause thermal necrosis, these non-ablative devices renew the targeted tissue without dense collagenous scarring over a period of 3 or more months. The spectrum of histologic findings, as illustrated in the Viveve ovine vaginal model, further support the previously documented safety and efficacy profiles for low-dose non-ablative hyperthermic devices that rejuvenate and tighten submucosal tissues.

  8. Multidiagnostics analysis of ion dynamics in ultrafast laser ablation of metals over a large fluence range

    SciTech Connect

    Anoop, K. K.; Polek, M. P.; Bruzzese, R.; Amoruso, S.; Harilal, Sivanandan S.

    2015-02-28

    The ions dynamics in ultrafast laser ablation of metals is studied over a fluence range spanning from the ablation threshold up to ~75 J/cm2 by means of three established diagnostic techniques. Langmuir probe, Faraday cup and spectrally resolved ICCD imaging simultaneously monitor the laser-produced plasma ions produced during ultrafast laser ablation of a copper target. The fluence dependence of ion yield is analyzed observing the occurrence of three different regimes. Moreover, the specific ion yield shows a maximum at about 4-5 J/cm2, followed by a gradual reduction and a transition to a high-fluence regime above ~50 J/cm2. The fluence variation of the copper ions angular distribution is also analyzed, observing a gradual increase of forward peaking of Cu ions for fluences up to ~10 J/cm2. Then, a broader ion component is observed at larger angles for fluences larger than ~10 J/cm2. Finally, an experimental characterization of the ions angular distribution for several metallic targets (Mg, Al, Cr, Fe, Cu, and W) is carried out at a relatively high fluence of ~66 J/cm2. Interestingly, the ion emission from the volatile metals show a narrow forward peaked distribution and a high peak ion yield compared to the refractory metals. Moreover, the width of ion angular distributions presents a striking correlation with the peak ion yield.

  9. Enhancement of Intermittent Androgen Ablation Therapy by Finasteride Administration in Animal Models

    DTIC Science & Technology

    2005-02-01

    AD Award Number: DAMD17-02-1-0113 TITLE: Enhancement of Intermittent Androgen Ablation Therapy by Finasteride Administration in Animal Models...Enhancement of Intermittent Androgen Ablation Therapy by DAMDI7-02-1-0113 Finasteride Administration in Animal Models 6. AUTHOR(S) Zhou Wang, Ph.D. 7...differentiation but weaker in stimulating proliferation, which led to our hypothesis that intermittent androgen suppression (IAS) can be enhanced by finasteride

  10. Optimization of Catheter Ablation of Atrial Fibrillation: Insights Gained from Clinically-Derived Computer Models

    PubMed Central

    Zhao, Jichao; Kharche, Sanjay R.; Hansen, Brian J.; Csepe, Thomas A.; Wang, Yufeng; Stiles, Martin K.; Fedorov, Vadim V.

    2015-01-01

    Atrial fibrillation (AF) is the most common heart rhythm disturbance, and its treatment is an increasing economic burden on the health care system. Despite recent intense clinical, experimental and basic research activity, the treatment of AF with current antiarrhythmic drugs and catheter/surgical therapies remains limited. Radiofrequency catheter ablation (RFCA) is widely used to treat patients with AF. Current clinical ablation strategies are largely based on atrial anatomy and/or substrate detected using different approaches, and they vary from one clinical center to another. The nature of clinical ablation leads to ambiguity regarding the optimal patient personalization of the therapy partly due to the fact that each empirical configuration of ablation lines made in a patient is irreversible during one ablation procedure. To investigate optimized ablation lesion line sets, in silico experimentation is an ideal solution. 3D computer models give us a unique advantage to plan and assess the effectiveness of different ablation strategies before and during RFCA. Reliability of in silico assessment is ensured by inclusion of accurate 3D atrial geometry, realistic fiber orientation, accurate fibrosis distribution and cellular kinetics; however, most of this detailed information in the current computer models is extrapolated from animal models and not from the human heart. The predictive power of computer models will increase as they are validated with human experimental and clinical data. To make the most from a computer model, one needs to develop 3D computer models based on the same functionally and structurally mapped intact human atria with high spatial resolution. The purpose of this review paper is to summarize recent developments in clinically-derived computer models and the clinical insights they provide for catheter ablation. PMID:25984605

  11. Image-based Modeling and Characterization of RF Ablation Lesions in Cardiac Arrhythmia Therapy.

    PubMed

    Linte, Cristian A; Camp, Jon J; Rettmann, Maryam E; Holmes, David R; Robb, Richard A

    2013-02-09

    In spite of significant efforts to enhance guidance for catheter navigation, limited research has been conducted to consider the changes that occur in the tissue during ablation as means to provide useful feedback on the progression of therapy delivery. We propose a technique to visualize lesion progression and monitor the effects of the RF energy delivery using a surrogate thermal ablation model. The model incorporates both physical and physiological tissue parameters, and uses heat transfer principles to estimate temperature distribution in the tissue and geometry of the generated lesion in near real time. The ablation model has been calibrated and evaluated using ex vivo beef muscle tissue in a clinically relevant ablation protocol. To validate the model, the predicted temperature distribution was assessed against that measured directly using fiberoptic temperature probes inserted in the tissue. Moreover, the model-predicted lesions were compared to the lesions observed in the post-ablation digital images. Results showed an agreement within 5°C between the model-predicted and experimentally measured tissue temperatures, as well as comparable predicted and observed lesion characteristics and geometry. These results suggest that the proposed technique is capable of providing reasonably accurate and sufficiently fast representations of the created RF ablation lesions, to generate lesion maps in near real time. These maps can be used to guide the placement of successive lesions to ensure continuous and enduring suppression of the arrhythmic pathway.

  12. Image-based modeling and characterization of RF ablation lesions in cardiac arrhythmia therapy

    NASA Astrophysics Data System (ADS)

    Linte, Cristian A.; Camp, Jon J.; Rettmann, Maryam E.; Holmes, David R.; Robb, Richard A.

    2013-03-01

    In spite of significant efforts to enhance guidance for catheter navigation, limited research has been conducted to consider the changes that occur in the tissue during ablation as means to provide useful feedback on the progression of therapy delivery. We propose a technique to visualize lesion progression and monitor the effects of the RF energy delivery using a surrogate thermal ablation model. The model incorporates both physical and physiological tissue parameters, and uses heat transfer principles to estimate temperature distribution in the tissue and geometry of the generated lesion in near real time. The ablation model has been calibrated and evaluated using ex vivo beef muscle tissue in a clinically relevant ablation protocol. To validate the model, the predicted temperature distribution was assessed against that measured directly using fiberoptic temperature probes inserted in the tissue. Moreover, the model-predicted lesions were compared to the lesions observed in the post-ablation digital images. Results showed an agreement within 5°C between the model-predicted and experimentally measured tissue temperatures, as well as comparable predicted and observed lesion characteristics and geometry. These results suggest that the proposed technique is capable of providing reasonably accurate and sufficiently fast representations of the created RF ablation lesions, to generate lesion maps in near real time. These maps can be used to guide the placement of successive lesions to ensure continuous and enduring suppression of the arrhythmic pathway.

  13. Dynamic frame selection for in vivo ultrasound temperature estimation during radiofrequency ablation

    NASA Astrophysics Data System (ADS)

    Daniels, Matthew J.; Varghese, Tomy

    2010-08-01

    Minimally invasive therapies such as radiofrequency ablation have been developed to treat cancers of the liver, prostate and kidney without invasive surgery. Prior work has demonstrated that ultrasound echo shifts due to temperature changes can be utilized to track the temperature distribution in real time. In this paper, a motion compensation algorithm is evaluated to reduce the impact of cardiac and respiratory motion on ultrasound-based temperature tracking methods. The algorithm dynamically selects the next suitable frame given a start frame (selected during the exhale or expiration phase where extraneous motion is reduced), enabling optimization of the computational time in addition to reducing displacement noise artifacts incurred with the estimation of smaller frame-to-frame displacements at the full frame rate. A region of interest that does not undergo ablation is selected in the first frame and the algorithm searches through subsequent frames to find a similarly located region of interest in subsequent frames, with a high value of the mean normalized cross-correlation coefficient value. In conjunction with dynamic frame selection, two different two-dimensional displacement estimation algorithms namely a block matching and multilevel cross-correlation are compared. The multi-level cross-correlation method incorporates tracking of the lateral tissue expansion in addition to the axial deformation to improve the estimation performance. Our results demonstrate the ability of the proposed motion compensation using dynamic frame selection in conjunction with the two-dimensional multilevel cross-correlation to track the temperature distribution.

  14. Solution of a one-dimensional ablation model

    NASA Astrophysics Data System (ADS)

    Rupertijunior, Nerbe Jose

    1991-11-01

    Ablation in multilayered one-dimensional media is studied. A finite element technique using a Streamline Upwind/Petrov-Galerkin (SU/PG) formulation is employed with a moving mesh which adapts itself to the moving boundary at each time step. The SU/PG formulation is used to avoid oscillations caused by first order derivatives in the energy equation. Ablation problems with time-dependent heat fluxes and a typical example in aerospace thermal protection applications are solved. Critical comparisons are made with finite differences results recently obtained through the control volume approach with exponential differencing. The generalized integral transform technique (GITT) is used as an alternative solution to ablation in multilayered media and to validate the results obtained by the finite element method. The eigenvalues needed in the GITT solution are determined simultaneously with the tansformed temperatures by rewriting the associated transcedental equations into ordinary differential equations.

  15. Towards patient-specific modelling of lesion formation during radiofrequency catheter ablation for atrial fibrillation

    PubMed Central

    Soor, Navjeevan; Morgan, Ross; Varela, Marta; Aslanidi, Oleg V.

    2017-01-01

    Radiofrequency catheter ablation procedures are a first-line method of clinical treatment for atrial fibrillation. However, they suffer from suboptimal success rates and are also prone to potentially serious adverse effects. These limitations can be at least partially attributed to the inter- and intra- patient variations in atrial wall thickness, and could be mitigated by patient-specific approaches to the procedure. In this study, a modelling approach to optimising ablation procedures in subject-specific 3D atrial geometries was applied. The approach enabled the evaluation of optimal ablation times to create lesions for a given wall thickness measured from MRI. A nonliner relationship was revealed between the thickness and catheter contact time required for fully transmural lesions. Hence, our approach based on MRI reconstruction of the atrial wall combined with subject-specific modelling of ablation can provide useful information for improving clinical procedures.

  16. Enhancement of Intermittent Androgen Ablation Therapy by Finasteride Administration in Animal Models

    DTIC Science & Technology

    2006-02-01

    1-0113 TITLE: Enhancement of Intermittent Androgen Ablation Therapy by Finasteride Administration in Animal Models...To) 14 JAN 2002 - 13 JAN 2006 4. TITLE AND SUBTITLE Enhancement of Intermittent Androgen Ablation Therapy by Finasteride 5a. CONTRACT NUMBER... finasteride , an inhibitor of T to DHT conversion. We have tested our hypothesis using LNCaP xenograft tumors in nude mice. Our experiments showed

  17. In Vivo Evaluation of Lung Microwave Ablation in a Porcine Tumor Mimic Model

    SciTech Connect

    Planche, Olivier; Teriitehau, Christophe; Boudabous, Sana; Robinson, Joey Marie; Rao, Pramod; Deschamps, Frederic; Farouil, Geoffroy; Baere, Thierry de

    2013-02-15

    To evaluate the microwave ablation of created tumor mimics in the lung of a large animal model (pigs), with examination of the ablative synergy of multiple antennas. Fifty-six tumor-mimic models of various sizes were created in 15 pigs by using barium-enriched minced collected thigh muscle injected into the lung of the same animal. Tumors were ablated under fluoroscopic guidance by single-antenna and multiple-antenna microwaves. Thirty-five tumor models were treated in 11 pigs with a single antenna at 75 W for 15 min, with 15 measuring 20 mm in diameter, 10 measuring 30 mm, and 10 measuring 40 mm. Mean circularity of the single-antenna ablation zones measured 0.64 {+-} 0.12, with a diameter of 35.7 {+-} 8.7 mm along the axis of the antenna and 32.7 {+-} 12.8 mm perpendicular to the feeding point. Multiple-antenna delivery of 75 W for 15 min caused intraprocedural death of 2 animals; modified protocol to 60 W for 10 min resulted in an ablation zone with a diameter of 43.0 {+-} 7.7 along the axis of the antenna and 54.8 {+-} 8.5 mm perpendicular to the feeding point; circularity was 0.70 {+-} 0.10. A single microwave antenna can create ablation zones large enough to cover lung tumor mimic models of {<=}4 cm with no heat sink effect from vessels of {<=}6 mm. Synergic use of 3 antennas allows ablation of larger volumes than single-antenna or radiofrequency ablation, but great caution must be taken when 3 antennas are used simultaneously in the lung in clinical practice.

  18. [Using 3.0 T MR to dynamically observe ablated lung tumors after percutaneous cryotherapy therapy].

    PubMed

    Li, J; Qu, J R; Zhang, H K; Xiao, J C; Jiang, L N; Zhao, Y; Li, H L

    2016-09-20

    Objective: To initially explore MRI features and its changing trends including of lung tumors after Argon-Helium cryoablation therapy, and enhance the recognition of MR findings of lung tumors postcryoablation. Methods: Twenty-three cases of patients with twenty six nodules of pulmonary malignance who received Argon-Helium cryoablation therapy in Henan Cancer Hospital from July 2014 to January 2016 were enrolled.All patients underwent unenhanced and dynamic contrast-enhanced MRI scans at pre-and 1-day, 1-week, 1-, 3-, 6-, 12-month postcryoablation. Two radiologists independently reviewed MRI images, signal intensity in the ablated zone on T1WI and T2WI were assessed by a 5-point scale.The changing trends of size and signal intensity with time were showed by time-maximum diameter and time-score curve.Time-signal intensity curves based on dynamic enhanced sequence were also performed. Results: Typical MRI findings includes: heterogeneous signal intensity on both T1WI and T2WI at 1-day postcryoablation(26/26, 100%). Hyper-intense on T1WI(22/26, 84.6%) and T2WI(17/26, 65.4%) with a hypo-intense rim at 1-week postcryoablation.Decreasing signal intensity on T1WI(17/26, 65.4%) and increasing signal intensity on T2WI(22/26, 84.6%) at 1-month.Signal intensity declined to the level of muscle on both T1WI(18/26, 69.2%) and T2WI(19/26, 73.1%) at 3-month, nineteen ablated zone turned into patchy shape(19/26, 73.1%). The maximum diameter was largest at 1-day and gradually shrunk with time. The mean score value toped at 1-week and gradually decreased. A straight line type without definite enhancement was found from 1-day to 1-month postcryoablation, an inflow curve with a mild delayed enhancement was seen from 3- to 12- month. Totally 4 recurrence (4/26, 15.4%) all occurred at 3-month and were lack of a complete hypo-intense rim at 1-week postcryoablation. Conclusion: MRI findings of lung tumors postcryoablation are characteristic, a complete hypo-intense rim at 1-week is helpful

  19. Pulsed laser ablation in liquids: Impact of the bubble dynamics on particle formation.

    PubMed

    Reich, Stefan; Schönfeld, Patrick; Wagener, Philipp; Letzel, Alexander; Ibrahimkutty, Shyjumon; Gökce, Bilal; Barcikowski, Stephan; Menzel, Andreas; Dos Santos Rolo, Tomy; Plech, Anton

    2017-03-01

    Pulsed laser ablation in liquids (PLAL) is a multiscale process, involving multiple mutually interacting phenomena. In order to synthesize nanoparticles with well-defined properties it is important to understand the dynamics of the underlying structure evolution. We use visible-light stroboscopic imaging and X-ray radiography to investigate the dynamics occurring during PLAL of silver and gold on a macroscopic scale, whilst X-ray small angle scattering is utilized to deepen the understanding on particle genesis. By comparing our results with earlier reports we can elucidate the role of the cavitation bubble. We find that symmetry breaking at the liquid-solid interface is a critical factor for bubble motion and that the bubble motion acts on the particle distribution as confinement and retraction force to create secondary agglomerates.

  20. Modeling bimodal vessel effects on radio and microwave frequency ablation zones.

    PubMed

    Brannan, Joseph D; Ladtkow, Casey M

    2009-01-01

    A bench liver model is presented that separates the thermal and electrical effects of large blood vessels within radio and microwave frequency ablation boundaries. The model includes a cylindrical tissue environment with a 5 mm vessel placed parallel to and 15 mm way from either a Covidien Energy-based Devices Evident MW Ablation Percutaneous Antenna or a CoolTip RF Ablation Single Electrode Kit. An array of fiber optic thermal probes is used to monitor radial temperature profile on the vessel and non-vessel sides of the ablation zone. Circulating blood exhibits higher electrical conductivity than surrounding liver tissue and provides a significant means for transport of thermal energy. Data from the thermal probes indicate key performance differentiators between MW and RF ablation modalities when they are used next to large blood vessels clarifying the difference between thermal and electrical energy sink. The results suggest RFA is susceptible to both the thermal and electrical energy sink effects of large vasculature while MWA is only susceptible to thermal sink. Ablation zone boundaries were distorted on both the vessel and non-vessel sides with RFA whereas with MWA only the vessel side is affected.

  1. Model-based assessment of probe placement criteria in cancer therapy using RF ablation

    NASA Astrophysics Data System (ADS)

    Tanotogono, E. W.; Akasum, G. F.; Suprijanto; Sudirham, J. J.

    2016-03-01

    Radiofrequency ablation has been developed as a minimally-invasive method for cancer therapy. Nevertheless, the unfeasibility of direct observation during ablation process sometimes becomes a challenge for practitioners, particularly those constrained by the absence of a proper monitoring system. Thus, aiming to develop a prudent cancer therapy planning, this research develops a 3D model that enable practitioners to predict the tissue damage resulted by a simulated ablation before a real ablation is executed. The model, developed using finite element method, is made to mimic real human liver tissue by simulating its physical properties as temperature-dependent functions. Three probe placement cases, representing three different approaches, are analysed to study the effect of probe placement configuration on tissue damage formed during a time-dependent ablation process. The three placement cases are surface-perpendicular placement, misaligned placement, and relatively accurate placement. It can be concluded that the accuracy of a probe placement configuration can be assessed by quantifying two major parameters: average tissue damage in the target domain and accumulated damage resulted in complementary tissue domain. Optimum ablation duration can also be determined by considering those parameters.

  2. Modeling of long term behavior of ablation plumes produced with ultrashort laser pulses

    SciTech Connect

    Feit, M D; Komashko, A M; Rubenchik, A M

    2000-02-10

    Expansion of ablation plumes created by intense ultrashort lasers is determined by various complicated physical processes which have very different spatial and time scales. Since complete simulation by one model is practically impossible, the authors suggest using two models describing initial and final stages that can be matched at an intermediate time. The proposed modeling procedure connects laser parameters to plume properties far away from the ablation spot. Laser material interaction and beginning of the expansion are simulated with a one-dimensional hydrodynamics code and the final stage is modeled using an analytical solution for an expanding three-dimensional ellipsoidal gas cloud.

  3. Dynamics of femtosecond laser absorption of fused silica in the ablation regime

    SciTech Connect

    Lebugle, M. Sanner, N.; Varkentina, N.; Sentis, M.; Utéza, O.

    2014-08-14

    We investigate the ultrafast absorption dynamics of fused silica irradiated by a single 500 fs laser pulse in the context of micromachining applications. A 60-fs-resolution pump-probe experiment that measures the reflectivity and transmissivity of the target under excitation is developed to reveal the evolution of plasma absorption. Above the ablation threshold, an overcritical plasma with highly non-equilibrium conditions is evidenced in a thin layer at the surface. The maximum electron density is reached at a delay of 0.5 ps after the peak of the pump pulse, which is a strong indication of the occurrence of electronic avalanche. The results are further analyzed to determine the actual feedback of the evolution of the optical properties of the material on the pump pulse. We introduce an important new quantity, namely, the duration of absorption of the laser by the created plasma, corresponding to the actual timespan of laser absorption by inverse Bremsstrahlung. Our results indicate an increasing contribution of plasma absorption to the total material absorption upon raising the excitation fluence above the ablation threshold. The role of transient optical properties during the energy deposition stage is characterized and our results emphasize the necessity to take it into account for better understanding and control of femtosecond laser-dielectrics interaction.

  4. Experiments on Dynamic Overpressure Stabilization of Ablative Richtmyer--Meshkov Growth in ICF Targets on OMEGA

    NASA Astrophysics Data System (ADS)

    Gotchev, O. V.; Goncharov, V. N.; Jaanimagi, P. A.; Knauer, J. P.; Meyerhofer, D. D.

    2002-11-01

    Dynamic overpressure sets the growth rate of the ablative Richtmyer--Meshkov (RM) instability and the late-time imprint levels in directly driven ICF targets. It leads to temporal oscillations of the perturbed ablation front, which have been predicted analytically and observed experimentally,(Y. Aglitskiy et al.), Phys. Plasmas 9, 2264 (2002). and in 2-D ORCHID simulations. These predictions were verified on OMEGA by measuring the perturbation amplitudes and frequencies directly with an x-ray framing camera through face-on x-ray radiography. Planar plastic targets with variable thickness (20 to 60 μm) and single-mode (λ = 10 to 30 μm) ripples on the front surface were irradiated with 1.5-ns square UV laser pulses at maximum energy. Results clearly indicate a phase reversal in the evolution of the target areal density perturbations, in good agreement with theory and simulation. Nonlinearity in the evolution of the preimposed mode, resulting in an enriched spectrum, was observed for initial amplitudes previously believed to develop linearly with time. Upcoming experiments with a high-resolution, streaked imager, will allow for the detailed recording of the evolution of the RM instability and the competing stabilization effect. This work was supported by the U.S. DOE Office of Inertial Confinement Fusion under Cooperative Agreement No. DE-FC03-92SF19460.

  5. Dynamics of laser ablative shock waves from one dimensional periodic structured surfaces

    NASA Astrophysics Data System (ADS)

    Paturi, Prem Kiran; Chelikani, Leela; Pinnoju, Venkateshwarlu; Acrhem Team

    2015-06-01

    Spatio-temporal evolution of Laser ablative shock waves (LASWs) from one dimensional periodic structured surfaces (1D-PSS) of Aluminum is studied using time resolved defocused shadowgraphy technique. LASWs are generated by focusing 7 ns pulses from second harmonic of Nd:YAG (532 nm, 10 Hz) laser on to 1D-PSS with sinusoidal and triangular modulations of varying periodicity. An expanded He-Ne laser (632.8 nm) is used as probe beam for shadowgraphy. Evolution of ablative shock front (SF) with 1.5 ns temporal resolution is used to measure position of the SF, its nature, density and pressure behind the SF. The effect of surface modulation on the LASW and contact front dynamics was compared to those from a flat surface (FS) of Aluminum. SWs from FS and PSS obeyed Taylor's solution for spherical and planar nature, respectively. The velocity of SF from 1D PSS had a twofold increase compared to the FS. This was further enhanced for structures whose periodicity is of the order of excitation wavelength. Variation of SF properties with varying periodicity over a range of 3.3 μm to 0.55 μm has the potential to tailor shockwaves of required parameters. The work is supported by Defence Research and Developement Organization, India through Grants-in-Aid Program. The periodic surfaces were procured with financial support from BRFST project No. NFP-MAT-A12-04.

  6. Cavitation dynamics of laser ablation of bulk and wire-shaped metals in water during nanoparticles production.

    PubMed

    De Giacomo, A; Dell'Aglio, M; Santagata, A; Gaudiuso, R; De Pascale, O; Wagener, P; Messina, G C; Compagnini, G; Barcikowski, S

    2013-03-07

    Although the first nanoseconds to microseconds rule the resulting process yield of laser ablation in liquid, a comprehensive view involving combination of time-resolved measurement techniques is still lacking. In this paper, fundamental aspects of laser ablation of metals in water during the production of nanoparticles are discussed. Three fast diagnostic methods have been applied simultaneously. These are Optical Emission Spectroscopy for the plasma characterization, fast shadowgraph for plasma and cavitation bubble dynamics and laser scattering for the mechanisms of delivery of the produced materials in the liquid. Moreover, in order to validate the discussion, the effect on cavitation dynamics of the ablation of bulk and wire-shaped targets has been investigated together with the relative nanoparticles production yield. Unusual arrow-bow ejection phenomena between the cavitation bubble and the wire result in suppressed material back-deposition, causing efficient ejection of ablated matter into the liquid. The presented nanosecond and microsecond-resolved analysis allows estimating the timescale and role of the basic mechanisms involved in laser ablation in liquids as well as the thermodynamic characteristics of the processes.

  7. Toward online modeling for lesion visualization and monitoring in cardiac ablation therapy.

    PubMed

    Linte, Cristian A; Camp, Jon J; Holmes, David R; Rettmann, Maryam E; Robb, Richard A

    2013-01-01

    Despite extensive efforts to enhance catheter navigation, limited research has been done to visualize and monitor the tissue lesions created during ablation in the attempt to provide feedback for effective therapy. We propose a technique to visualize the temperature distribution and extent of induced tissue injury via an image-based model that uses physiological tissue parameters and relies on heat transfer principles to characterize lesion progression in near real time. The model was evaluated both numerically and experimentally using ex vivo bovine muscle samples while emulating a clinically relevant ablation protocol. Results show agreement to within 5 degreeC between the model-predicted and experimentally measured end-ablation tissue temperatures, as well as comparable predicted and observed lesion characteristics. The model yields temperature and lesion updates in near real-time, thus providing reasonably accurate and sufficiently fast monitoring for effective therapy.

  8. Ablative Thermal Protection System Fundamentals

    NASA Technical Reports Server (NTRS)

    Beck, Robin A. S.

    2013-01-01

    This is the presentation for a short course on the fundamentals of ablative thermal protection systems. It covers the definition of ablation, description of ablative materials, how they work, how to analyze them and how to model them.

  9. Theory and numerical modeling of the accelerated expansion of laser-ablated materials near a solid surface

    NASA Astrophysics Data System (ADS)

    Chen, K. R.; King, T. C.; Hes, J. H.; Leboeuf, J. N.; Geohegan, D. B.; Wood, R. F.; Puretzky, A. A.; Donato, J. M.

    1999-09-01

    A self-similar theory and numerical hydrodynamic modeling is developed to investigate the effects of dynamic source and partial ionization on the acceleration of the unsteady expansion of laser-ablated material near a solid target surface. The dynamic source effect accelerates the expansion in the direction perpendicular to the target surface, while the dynamic partial ionization effect accelerates the expansion in all directions. The vaporized material during laser ablation provides a nonadiabatic dynamic source at the target surface into the unsteady expanding fluid. For studying the dynamic source effect, the self-similar theory begins with an assumed profile of plume velocity, u=v/vm=α+(1-α)ξ, where vm is the maximum expansion velocity, α is a constant, and ξ=x/vmt. The resultant profiles of plume density and plume temperature are derived. The relations obtained from the conservations of mass, momentum, and energy, respectively, all show that the maximum expansion velocity is inversely proportional to α, where 1-α is the slope of plume velocity profile. The numerical hydrodynamic simulation is performed with the Rusanov method and the Newton Raphson method. The profiles and scalings obtained from numerical hydrodynamic modeling are in good agreement with the theory. The dynamic partial ionization requires ionization energy from the heat at the expansion front, and thus reduces the increase of front temperature. The reduction of thermal motion would increase the flow velocity to conserve the momentum. This dynamic partial ionization effect is studied with the numerical hydrodynamic simulation including the Saha equation. With these effects, α is reduced from its value of conventional free expansion. This reduction on α increases the flow velocity slope, decreases the flow velocity near the surface, and reduces the thermal motion of plume, such that the maximum expansion velocity is significantly increased over that found from conventional models. The

  10. Ultrashort laser ablation of metals: pump probe experiments, the role of ballistic electrons and the two-temperature model

    NASA Astrophysics Data System (ADS)

    Schmidt, V.; Husinsky, W.; Betz, G.

    2002-09-01

    The dynamics of laser ablation from metallic surfaces (Ag, Al, Fe and Ni) induced by the combined effect of two 30 fs sub-threshold laser pulses has been examined. In a pump-probe setup the yield of the emitted secondary ions and neutrals has been determined as a function of the delay between the two laser pulses. The instantaneous generation of highly excited (ballistic) electrons by the laser pulse and the thermal properties of the metal, which have been modified to be valid into the regime of high electron temperatures have been found to be determining factors for the ablation process. Unexpectedly, two distinct maxima for particle emission have been observed as a function of the time separation of the pump and the probe pulse. The energy relaxation is discussed within the frame of the two-temperature model (TTM) and it is shown that the measured behavior (in the time domain) of ablated particles can only be explained by taking into account a general expression for the thermal conductivity, valid for a wide range of electron temperatures and in addition a substantial role of hot, ballistic electrons.

  11. Imaging the ultrafast Kerr effect, free carrier generation, relaxation and ablation dynamics of Lithium Niobate irradiated with femtosecond laser pulses

    NASA Astrophysics Data System (ADS)

    Garcia-Lechuga, Mario; Siegel, Jan; Hernandez-Rueda, Javier; Solis, Javier

    2014-09-01

    The interaction of high-power single 130 femtosecond (fs) laser pulses with the surface of Lithium Niobate is experimentally investigated in this work. The use of fs-resolution time-resolved microscopy allows us to separately observe the instantaneous optical Kerr effect induced by the pulse and the generation of a free electron plasma. The maximum electron density is reached 550 fs after the peak of the Kerr effect, confirming the presence of a delayed carrier generation mechanism. We have also observed the appearance of transient Newton rings during the ablation process, related to optical interference of the probe beam reflected at the front and back surface of the ablating layer. Finally, we have analyzed the dynamics of the photorefractive effect on a much longer time scale by measuring the evolution of the transmittance of the irradiated area for different fluences below the ablation threshold.

  12. Imaging the ultrafast Kerr effect, free carrier generation, relaxation and ablation dynamics of Lithium Niobate irradiated with femtosecond laser pulses

    SciTech Connect

    Garcia-Lechuga, Mario Siegel, Jan Hernandez-Rueda, Javier; Solis, Javier

    2014-09-21

    The interaction of high-power single 130 femtosecond (fs) laser pulses with the surface of Lithium Niobate is experimentally investigated in this work. The use of fs-resolution time-resolved microscopy allows us to separately observe the instantaneous optical Kerr effect induced by the pulse and the generation of a free electron plasma. The maximum electron density is reached 550 fs after the peak of the Kerr effect, confirming the presence of a delayed carrier generation mechanism. We have also observed the appearance of transient Newton rings during the ablation process, related to optical interference of the probe beam reflected at the front and back surface of the ablating layer. Finally, we have analyzed the dynamics of the photorefractive effect on a much longer time scale by measuring the evolution of the transmittance of the irradiated area for different fluences below the ablation threshold.

  13. Experimental and modelling investigations into the laser ablation with picosecond pulses at second harmonics

    NASA Astrophysics Data System (ADS)

    Boerner, Paul; Zandonadi, Germana; Eberle, Gregory; Wegener, Konrad

    2015-03-01

    Ablation threshold experiments on various materials are carried out using a picosecond laser generating second harmonic radiation in air at atmospheric pressure. Various materials are investigated which vary according to their different electronic band gap structure and include: silicon, fine grain polycrystalline diamond, copper, steel and tungsten carbide. Through the use of scanning electron microscopy and 3D confocal microscopy, the crater depth and diameter are determined and a correlation is found. The ablation thresholds are given for the aforementioned materials and compared with recent literature results. Picosecond laser-material interactions are modelled using the two-temperature model, simulated and compared with experimental results for metallic materials. An extension of the two-temperature model to semiconducting and insulating materials is discussed. This alternative model uses multiple rate equations to describe the transient free electron density. Additionally, a set of coupled ordinary differential equations describes the processes of multiphoton excitation, inverse bremsstrahlung, and collisional excitation. The resulting electron density distribution can be used as an input for an electron density dependent twotemperature model. This multiple rate equation model is a generic and fast model, which provides important information like ablation threshold, ablation depth and optical properties.

  14. Quantitative Comparison of a New Ab Initio Micrometeor Ablation Model with an Observationally Verifiable Standard Model

    NASA Astrophysics Data System (ADS)

    Meisel, David D.; Szasz, Csilla; Kero, Johan

    2008-06-01

    The Arecibo UHF radar is able to detect the head-echos of micron-sized meteoroids up to velocities of 75 km/s over a height range of 80 140 km. Because of their small size there are many uncertainties involved in calculating their above atmosphere properties as needed for orbit determination. An ab initio model of meteor ablation has been devised that should work over the mass range 10-16 kg to 10-7 kg, but the faint end of this range cannot be observed by any other method and so direct verification is not possible. On the other hand, the EISCAT UHF radar system detects micrometeors in the high mass part of this range and its observations can be fit to a “standard” ablation model and calibrated to optical observations (Szasz et al. 2007). In this paper, we present a preliminary comparison of the two models, one observationally confirmable. Among the features of the ab initio model that are different from the “standard” model are: (1) uses the experimentally based low pressure vaporization theory of O’Hanlon (A users’s guide to vacuum technology, 2003) for ablation, (2) uses velocity dependent functions fit from experimental data on heat transfer, luminosity and ionization efficiencies measured by Friichtenicht and Becker (NASA Special Publication 319: 53, 1973) for micron sized particles, (3) assumes a density and temperature dependence of the micrometeoroids and ablation product specific heats, (4) assumes a density and size dependent value for the thermal emissivity and (5) uses a unified synthesis of experimental data for the most important meteoroid elements and their oxides through least square fits (as functions of temperature, density, and/or melting point) of the tables of thermodynamic parameters given in Weast (CRC Handbook of Physics and Chemistry, 1984), Gray (American Institute of Physics Handbook, 1972), and Cox (Allen’s Astrophysical Quantities 2000). This utilization of mostly experimentally determined data is the main reason for

  15. A preclinical rodent model of acute radiation-induced lung injury after ablative focal irradiation reflecting clinical stereotactic body radiotherapy.

    PubMed

    Hong, Zhen-Yu; Lee, Hae-June; Choi, Won Hoon; Lee, Yoon-Jin; Eun, Sung Ho; Lee, Jung Il; Park, Kwangwoo; Lee, Ji Min; Cho, Jaeho

    2014-07-01

    In a previous study, we established an image-guided small-animal micro-irradiation system mimicking clinical stereotactic body radiotherapy (SBRT). The goal of this study was to develop a rodent model of acute phase lung injury after ablative irradiation. A radiation dose of 90 Gy was focally delivered to the left lung of C57BL/6 mice using a small animal stereotactic irradiator. At days 1, 3, 5, 7, 9, 11 and 14 after irradiation, the lungs were perfused with formalin for fixation and paraffin sections were stained with hematoxylin and eosin (H&E) and Masson's trichrome. At days 7 and 14 after irradiation, micro-computed tomography (CT) images of the lung were taken and lung functional measurements were performed with a flexiVent™ system. Gross morphological injury was evident 9 days after irradiation of normal lung tissues and dynamic sequential events occurring during the acute phase were validated by histopathological analysis. CT images of the mouse lungs indicated partial obstruction located in the peripheral area of the left lung. Significant alteration in inspiratory capacity and tissue damping were detected on day 14 after irradiation. An animal model of radiation-induced lung injury (RILI) in the acute phase reflecting clinical stereotactic body radiotherapy was established and validated with histopathological and functional analysis. This model enhances our understanding of the dynamic sequential events occurring in the acute phase of radiation-induced lung injury induced by ablative dose focal volume irradiation.

  16. Evaluation of Finite-Rate GasSurface Interaction Models for a Carbon Based Ablator

    NASA Technical Reports Server (NTRS)

    Chen, Yih-Kanq; Goekcen, Tahir

    2015-01-01

    Two sets of finite-rate gas-surface interaction model between air and the carbon surface are studied. The first set is an engineering model with one-way chemical reactions, and the second set is a more detailed model with two-way chemical reactions. These two proposed models intend to cover the carbon surface ablation conditions including the low temperature rate-controlled oxidation, the mid-temperature diffusion-controlled oxidation, and the high temperature sublimation. The prediction of carbon surface recession is achieved by coupling a material thermal response code and a Navier-Stokes flow code. The material thermal response code used in this study is the Two-dimensional Implicit Thermal-response and Ablation Program, which predicts charring material thermal response and shape change on hypersonic space vehicles. The flow code solves the reacting full Navier-Stokes equations using Data Parallel Line Relaxation method. Recession analyses of stagnation tests conducted in NASA Ames Research Center arc-jet facilities with heat fluxes ranging from 45 to 1100 wcm2 are performed and compared with data for model validation. The ablating material used in these arc-jet tests is Phenolic Impregnated Carbon Ablator. Additionally, computational predictions of surface recession and shape change are in good agreement with measurement for arc-jet conditions of Small Probe Reentry Investigation for Thermal Protection System Engineering.

  17. Ablation Modeling of Ares-I Upper State Thermal Protection System Using Thermal Desktop

    NASA Technical Reports Server (NTRS)

    Sharp, John R.; Page, Arthur T.

    2007-01-01

    The thermal protection system (TPS) for the Ares-I Upper Stage will be based on Space Transportation System External Tank (ET) and Solid Rocket Booster (SRB) heritage materials. These TPS materials were qualified via hot gas testing that simulated ascent and re-entry aerothermodynamic convective heating environments. From this data, the recession rates due to ablation were characterized and used in thermal modeling for sizing the thickness required to maintain structural substrate temperatures. At Marshall Space Flight Center (MSFC), the in-house code ABL is currently used to predict TPS ablation and substrate temperatures as a FORTRAN application integrated within SINDA/G. This paper describes a comparison of the new ablation utility in Thermal Desktop and SINDA/FLUINT with the heritage ABL code and empirical test data which serves as the validation of the Thermal Desktop software for use on the design of the Ares-I Upper Stage project.

  18. Modeling of ablation threshold dependence on pulse duration for dielectrics with ultrashort pulsed laser

    NASA Astrophysics Data System (ADS)

    Sun, Mingying; Zhu, Jianqiang; Lin, Zunqi

    2017-01-01

    We present a numerical model of plasma formation in ultrafast laser ablation on the dielectrics surface. Ablation threshold dependence on pulse duration is predicted with the model and the numerical results for water agrees well with the experimental data for pulse duration from 140 fs to 10 ps. Influences of parameters and approximations of photo- and avalanche-ionization on the ablation threshold prediction are analyzed in detail for various pulse lengths. The calculated ablation threshold is strongly dependent on electron collision time for all the pulse durations. The complete photoionization model is preferred for pulses shorter than 1 ps rather than the multiphoton ionization approximations. The transition time of inverse bremsstrahlung absorption needs to be considered when pulses are shorter than 5 ps and it can also ensure the avalanche ionization (AI) coefficient consistent with that in multiple rate equations (MREs) for pulses shorter than 300 fs. The threshold electron density for AI is only crucial for longer pulses. It is reasonable to ignore the recombination loss for pulses shorter than 100 fs. In addition to thermal transport and hydrodynamics, neglecting the threshold density for AI and recombination could also contribute to the disagreements between the numerical and the experimental results for longer pulses.

  19. Simulation of ablation and plume dynamics under femtosecond double-pulse laser irradiation of aluminum: Comparison of atomistic and continual approaches

    NASA Astrophysics Data System (ADS)

    Fokin, Vladimir B.; Povarnitsyn, Mikhail E.; Levashov, Pavel R.

    2017-02-01

    We elaborated two numerical methods, two-temperature hydrodynamics and hybrid two-temperature molecular dynamics, which take into account basic mechanisms of a metal target response to ultrashort laser irradiation. The model used for the description of the electronic subsystem is identical for both approaches, while the ionic part is defined by an equation of state in hydrodynamics and by an interatomic potential in molecular dynamics. Since the phase diagram of the equation of state and corresponding potential match reasonably well, the dynamics of laser ablation obtained by both methods is quite similar. This correspondence can be considered as a first step towards the development of a self-consistent combined model. Two important processes are highlighted in simulations of double-pulse ablation: (1) the crater depth decrease as a result of recoil flux formation in the nascent plume when the delay between the pulses increases; (2) the plume reheating by the second pulse that gives rise to two- three-fold growth of the electron temperature with the delay varying from 0 to 200 ps.

  20. Equivalent Dynamic Models.

    PubMed

    Molenaar, Peter C M

    2017-02-16

    Equivalences of two classes of dynamic models for weakly stationary multivariate time series are discussed: dynamic factor models and autoregressive models. It is shown that exploratory dynamic factor models can be rotated, yielding an infinite set of equivalent solutions for any observed series. It also is shown that dynamic factor models with lagged factor loadings are not equivalent to the currently popular state-space models, and that restriction of attention to the latter type of models may yield invalid results. The known equivalent vector autoregressive model types, standard and structural, are given a new interpretation in which they are conceived of as the extremes of an innovating type of hybrid vector autoregressive models. It is shown that consideration of hybrid models solves many problems, in particular with Granger causality testing.

  1. Femtosecond pulse laser ablation of chromium: experimental results and two-temperature model simulations

    NASA Astrophysics Data System (ADS)

    Saghebfar, M.; Tehrani, M. K.; Darbani, S. M. R.; Majd, A. E.

    2017-01-01

    In this work, the results of experimental and computational single- and multi-shot ablation threshold and the incubation effect of chromium metal sample, irradiated by ultrashort laser pulses, are presented. The experimental value of the ablation threshold is determined based on D2 method by measuring the outer ablation crater diameters as a function of incident laser pulse energy using 800 nm, 30 fs, laser pulses. The value of 0.19 ± 0.04 (J/cm2 ), is obtained for the single-shot ablation threshold fluence. The experimental results are compared with time-dependent heat flow calculations based on the two-temperature model and the effect of number and separation time of two consecutive laser pulses with the same total fluence is studied for the Cr target. Moreover, the role of pulse width and absorbed fluence in thermal equilibrium time between electrons and lattice is investigated in two-temperature model. The thermal equilibrium between electron and lattice is established after a few picoseconds for low fluences and after a few tens of picoseconds at higher fluences.

  2. Correlation between Ultrasound Reflection Intensity and Tumor Ablation Ratio of Late-Stage Pancreatic Carcinoma in HIFU Therapy: Dynamic Observation on Ultrasound Reflection Intensity

    PubMed Central

    Ge, Hui-Yu; Miao, Li-Ying; Wang, Jin-Rui; Xiong, Liu-Lin; Yan, Fang; Zheng, Cui-Shan; Jia, Jian-Wen; Cui, Li-Gang; Chen, Wen

    2013-01-01

    The minimally invasive high-intensity focused ultrasound (HIFU) therapy is thermal ablation treatment for late-stage pancreatic carcinoma with widely recognized safety and effectiveness, but there are currently no instant assessment methods for its ablation effect. It is vital to find a real-time high-sensitive assessment method. This research aims to dynamically observe the variation rules of ultrasound reflection intensity, analyze the correlation between ultrasound reflection intensity and tumor ablation ratio, and find out the value of ultrasound reflection intensity in prognosis of HIFU ablation effect. HIFU intermittent therapies were retrospectively analyzed for 31 subjects with late-stage pancreatic carcinoma from March 2007 to December 2009 in the study. The variation rules of the ultrasound reflection intensity during HIFU therapy were summarized and the correlation between ultrasound reflection intensity and tumor ablation ratio was analyzed based on the tumor ablation ratio indicated by CT scanning. The conclusion is that variation of ultrasound reflection intensity can be used for initial assessment of tumor ablation in HIFU therapy and early prognosis of overall HIFU ablation, providing important clinical basis for improving safety and effectiveness of HIFU therapy. Ultrasound can work as a real-time imaging instrument for observation of HIFU ablation effect in treating late-stage pancreatic carcinoma. PMID:24453916

  3. Correlation between ultrasound reflection intensity and tumor ablation ratio of late-stage pancreatic carcinoma in HIFU therapy: dynamic observation on ultrasound reflection intensity.

    PubMed

    Ge, Hui-Yu; Miao, Li-Ying; Wang, Jin-Rui; Xiong, Liu-Lin; Yan, Fang; Zheng, Cui-Shan; Jia, Jian-Wen; Cui, Li-Gang; Chen, Wen

    2013-01-01

    The minimally invasive high-intensity focused ultrasound (HIFU) therapy is thermal ablation treatment for late-stage pancreatic carcinoma with widely recognized safety and effectiveness, but there are currently no instant assessment methods for its ablation effect. It is vital to find a real-time high-sensitive assessment method. This research aims to dynamically observe the variation rules of ultrasound reflection intensity, analyze the correlation between ultrasound reflection intensity and tumor ablation ratio, and find out the value of ultrasound reflection intensity in prognosis of HIFU ablation effect. HIFU intermittent therapies were retrospectively analyzed for 31 subjects with late-stage pancreatic carcinoma from March 2007 to December 2009 in the study. The variation rules of the ultrasound reflection intensity during HIFU therapy were summarized and the correlation between ultrasound reflection intensity and tumor ablation ratio was analyzed based on the tumor ablation ratio indicated by CT scanning. The conclusion is that variation of ultrasound reflection intensity can be used for initial assessment of tumor ablation in HIFU therapy and early prognosis of overall HIFU ablation, providing important clinical basis for improving safety and effectiveness of HIFU therapy. Ultrasound can work as a real-time imaging instrument for observation of HIFU ablation effect in treating late-stage pancreatic carcinoma.

  4. Thermal melting and ablation dynamics on a femtosecond laser-heated highly-oriented pyrolytic graphite surface

    NASA Astrophysics Data System (ADS)

    Ionin, A. A.; Kudryashov, S. I.

    2016-10-01

    Time-resolved optical reflection microscopy studies demonstrate spatiotemporal dynamics of melting and ablation of graphite surface molten by single IR femtosecond laser pulses, which are revealed by monitoring picosecond oscillations of the probe reflectivity modulated by transient acoustic reverberations in the surface melt. Temporal periods and amplitudes of the reverberations are affected through transient variations of melt thickness and acoustic impedance by melting, thermal expansion, spallation and fragmentation processes, thus enabling quantitative evaluation of their contributions and basic parameters.

  5. Understanding plume splitting of laser ablated plasma: A view from ion distribution dynamics

    SciTech Connect

    Wu, Jian; Li, Xingwen; Wei, Wenfu; Jia, Shenli; Qiu, Aici

    2013-11-15

    Plume splitting in low-pressure ambient air was understood in view of ion distribution dynamics from the laser ablated Al plasma (1064 nm 0.57 J/mm{sup 2}) by combining fast photography and spatially resolved spectroscopy. In the beginning, the spectral lines were mainly from the Al III ion. Then, the Bragg peak in stopping power of the ambient gas to Al III could be the dominant reason for the enhanced emission from the fast moving part, and the recombination of Al III to Al I-II ions near the target surface was response to the radiations from the slow moving/stationary part. As the ambient gas pressure increased, stopping distances of the Al III decreased, and radiation from the air ions became pronounced. The laser shadowgraph image at 1100 Pa indicated that the shock wave front located between the fast moving and slow moving parts. Electron densities of the fast moving plasma, which peaked at the plasma front, were on the order of 10{sup 16} cm{sup −3}, and the electron temperatures were 2–3 eV.

  6. 3D transient model to predict temperature and ablated areas during laser processing of metallic surfaces

    NASA Astrophysics Data System (ADS)

    Naghshine, Babak. B.; Kiani, Amirkianoosh

    2017-02-01

    Laser processing is one of the most popular small-scale patterning methods and has many applications in semiconductor device fabrication and biomedical engineering. Numerical modelling of this process can be used for better understanding of the process, optimization, and predicting the quality of the final product. An accurate 3D model is presented here for short laser pulses that can predict the ablation depth and temperature distribution on any section of the material in a minimal amount of time. In this transient model, variations of thermal properties, plasma shielding, and phase change are considered. Ablation depth was measured using a 3D optical profiler. Calculated depths are in good agreement with measured values on laser treated titanium surfaces. The proposed model can be applied to a wide range of materials and laser systems.

  7. Fractal hydrodynamic model of high-fluence laser ablation plasma expansion

    SciTech Connect

    Agop, M.; Nica, P.; Gurlui, S.; Focsa, C.

    2010-10-08

    Optical/electrical characterization of transient plasmas generated by high-fluence (up to 1 kJ/cm{sup 2}) laser ablation of various targets revealed as a general feature the splitting of the plume in two structures. In order to account for this behavior, a new fractal hydrodynamic model has been developed in a non-differentiable space-time. The model successfully retrieves the kinetics of the two structures.

  8. Ablator Modeling: Why Not Much Has Changed Over the Past 45 plus Years

    NASA Technical Reports Server (NTRS)

    Laub, B.

    2011-01-01

    In the late 1950s, the earliest models describing the thermal response of ablative materials were based on the heat of ablation concept, which is an empirical approach that was reasonable for the types of materials of interest at that time. In the early-mid 60s the models were expanded to include pyrolysis since organic resin composites became the TPS materials of interest. However, surface recession was still predominantly modeled via empirical correlation. The development of the 1-D CMA finite difference code in the mid-late 60s introduced the thermochemical ablation approach for gas/surface interactions. Since that time investigators have developed finite volume and finite element codes, in 1-D, 2-D and 3-D, but the basic modeling has not evolved significantly. Models describing internal gas pressure due to pyrolysis, particle impact erosion, in-depth radiant transport, etc., have been added to address specific problems, but the fundamental modeling has not evolved. The reasons for this stagnation, as viewed by the author, will be described.

  9. A novel parameter for predicting arterial fusion and ablation in finite element models

    NASA Astrophysics Data System (ADS)

    Fankell, Douglas; Kramer, Eric; Taylor, Kenneth; Ferguson, Virginia; Rentschler, Mark E.

    2015-03-01

    Tissue fusion devices apply heat and pressure to ligate or ablate blood vessels during surgery. Although this process is widely used, a predictive finite element (FE) model incorporating both structural mechanics and heat transfer has not been developed, limiting improvements to empirical evidence. This work presents the development of a novel damage parameter, which incorporates stress, water content and temperature, and demonstrates its application in a FE model. A FE model, using the Holzapfel-Gasser-Ogden strain energy function to represent the structural mechanics and equations developed by Cezo to model water content and heat transfer, was created to simulate the fusion or ablation of a porcine splenic artery. Using state variables, the stresses, temperature and water content are recorded and combined to create a single parameter at each integration point. The parameter is then compared to a critical value (determined through experiments). If the critical value is reached, the element loses all strength. If the value is not reached, no change occurs. Little experimental data exists for validation, but the resulting stresses, temperatures and water content fall within ranges predicted by prior work. Due to the lack of published data, additional experimental studies are being conducted to rigorously validate and accurately determine the critical value. Ultimately, a novel method for demonstrating tissue damage and fusion in a FE model is presented, providing the first step towards in-depth FE models simulating fusion and ablation of arteries.

  10. Abrasion-ablation model for neutron production in heavy ion reactions

    NASA Technical Reports Server (NTRS)

    Cucinotta, Francis A.; Wilson, John W.; Townsend, Lawrence W.

    1995-01-01

    In heavy ion reactions, neutron production at forward angles is observed to occur with a Gaussian shape that is centered near the beam energy and extends to energies well above that of the beam. This paper presents an abrasion-ablation model for making quantitative predictions of the neutron spectrum. To describe neutrons produced from the abrasion step of the reaction where the projectile and target overlap, the authors use the Glauber model and include effects of final-state interactions. They then use the prefragment mass distribution from abrasion with a statistical evaporation model to estimate the neutron spectrum resulting from ablation. Measurements of neutron production from Ne and Nb beams are compared with calculations, and good agreement is found.

  11. Mouse Models in Orthopaedic Research: An Overview of Fracture, Marrow Ablation, and Distraction Osteogenesis

    PubMed Central

    Lybrand, Kyle; Bragdon, Beth; Gerstenfeld, Louis

    2015-01-01

    Three commonly used murine surgical models of bone healing (closed fracture with intramedullary fixation, distraction osteogenesis (DO), and marrow ablation by reaming) are presented. Detailed surgical protocols for each model are outlined. The nature of the regenerative processes and the types of research questions that may be addressed with these models are briefly outlined. The relative strengths and weaknesses of these models are compared to a number of other surgical models that are used to address similar research questions. Refer to our companion article for more detailed overview of the underlying biology of each model. PMID:25727199

  12. An improved three-dimensional two-temperature model for multi-pulse femtosecond laser ablation of aluminum

    SciTech Connect

    Zhang, Jinping; Chen, Yuping Hu, Mengning; Chen, Xianfeng

    2015-02-14

    In this paper, an improved three-dimensional two-temperature model for multi-pulse femtosecond laser ablation of aluminum was proposed and proved in our experiment. Aiming to achieve hole-drilling with a high ratio of depth/entrance diameter in vacuum, this model can predict the depth and radius of the drilled holes precisely when employing different laser parameters. Additionally, for multi-pulse laser ablation, we found that the laser fluence and number of pulses are the dominant parameters and the multi-pulse ablation threshold is much lower than the single-pulse one, which will help to obtain high-quality holes.

  13. Critical Fluences And Modeling Of CO{sub 2} Laser Ablation Of Polyoxymethylene From Vaporization To The Plasma Regime

    SciTech Connect

    Sinko, John E.; Phipps, Claude R.; Tsukiyama, Yosuke; Ogita, Naoya; Sasoh, Akihiro; Umehara, Noritsugu; Gregory, Don A.

    2010-05-06

    A CO{sub 2} laser was operated at pulse energies up to 10 J to ablate polyoxymethylene targets in air and vacuum conditions. Critical effects predicted by ablation models are discussed in relation to the experimental data, including specifically the threshold fluences for vaporization and critical plasma formation, and the fluence at which the optimal momentum coupling coefficient is found. Finally, we discuss a new approach for modeling polymers at long wavelengths, including a connection formula that links the vaporization and plasma regimes for laser ablation propulsion.

  14. Dynamics of vitellogenin and vitellogenesis-inhibiting hormone levels in adult and subadult whiteleg shrimp, Litopenaeus vannamei: relation to molting and eyestalk ablation.

    PubMed

    Kang, Bong Jung; Okutsu, Tomoyuki; Tsutsui, Naoaki; Shinji, Junpei; Bae, Sun-Hye; Wilder, Marcy N

    2014-01-01

    Levels of vitellogenin (VG) and vitellogenesis-inhibiting hormone (VIH) in the whiteleg shrimp, Litopenaeus vannamei, were measured by time-resolved fluoroimmunoassay in relation to the molting cycle and ovarian maturation induced by eyestalk ablation. During the molt cycle, VG mRNA expression levels and VG concentrations showed similar patterns of fluctuation. VG levels increased significantly at early intermolt (stage C0) in adults, but not in subadults. Unilateral and bilateral eyestalk ablation increased VG levels in adults, whereas only bilateral eyestalk ablation affected subadults. VIH levels showed contrasting patterns between adults and subadults. In adults, levels were high in late postmolt adults (stage B) and then low thereafter, whereas they increased from postmolt (stage A) to intermolt (stage C0) in subadults and remained high. Unilateral eyestalk ablation increased VIH levels 10 days following ablation in adults, after which levels decreased at 20 days. VIH levels decreased from 10 to 20 days after bilateral ablation. Both unilateral and bilateral ablation led to increased VIH levels in subadults. Eyestalk ablation induced ovarian maturation, but did not reduce VIH concentrations in the hemolymph. This phenomenon was perhaps due to other crustacean hyperglycemic hormone peptides having cross-reactivity with VIH antibodies. This is the first report to quantify concentrations of VG and VIH together in L. vannamei hemolymph, and to examine their relative dynamics.

  15. Thermal dynamic modeling study

    NASA Technical Reports Server (NTRS)

    Ojalvo, I. U.

    1972-01-01

    Some thermal dynamic requirements associated with the space shuttle vehicle are reviewed. Pertinent scaling laws are discussed and recommendations are offered regarding the need for conducting reduced-scale dynamic tests of major components at elevated temperatures. Items considered are the development and interpretation of thermal dynamic structural scaling laws, the identification of major related problem areas and a presentation of viable model fabrication, instrumentation, and test procedures.

  16. Laser mass ablation efficiency measurements indicate bubble-driven dynamics dominates laser thrombolysis

    SciTech Connect

    Godwin, R.P.; Chapyak, E.J.; Prahl, S.A.; Shangguan, H.Q.

    1998-03-01

    Mass removal experiments have been performed at the Oregon Medical Laser Center with 10 to 100 mJ 1 {micro}s laser pulses at optical wavelengths. Above the energy threshold for bubble formation, the laser mass ablation efficiency ({micro}g/mJ) for removal of gel surrogate thrombus is nearly constant for a given experimental geometry and gel absorption coefficient. The efficiency in contact experiments, in which the optical fiber delivering the energy is in close proximity to the absorbing gel, is approximately three times that of non-contact experiments, in which the optical fiber is {approximately}1 mm from the gel. Mass removal occurs hundreds of microseconds after the laser deposition. Experimental data and numerical simulations are consistent with the hypothesis that jet formation during bubble collapse plays a dominant role in mass removal. This hypothesis suggests a model in which the mass removed scales linearly with the maximum bubble volume and explains the distinctive features, including the magnitude, of the mass removal.

  17. Modeling of the human enamel laser ablation process at the mesoscopic scale

    NASA Astrophysics Data System (ADS)

    Vila Verde, Ana C.; Duarte Ramos, Marta Maria; Mendes Ribeiro, Ricardo; Stoneham, Marshall

    2003-06-01

    A mesoscopic simulation of the process of human enamel laser ablation by Er:YAG and CO2 lasers is being developed using the finite element method, taking into account the complex structure and chemical composition of this material. A geometric model that allows studying in detail the temperature, stress and displacement distribution within a few enamel rods is presented. The heat generation that takes place inside the enamel at the centre of the laser spot, caused by a non-ablative laser pulse emitted by CO2 and Er:YAG lasers, was simulated. The sensitivity of our model to the estimated material parameters was studied. Temperature, displacement and stress distribution maps obtained for both lasers are presented. These preliminary results suggest that the temperature distribution across the enamel rods is different in the two situations considered; thermally induced stresses in the material are higher in the regions that are richer in hydroxyapatite (HA), and the higher displacements are observed in the regions that are rich in water. The rod tails inside enamel present higher stresses in the direction perpendicular to the surface of enamel than the ones that are created at the surface of our simulated structure. We conclude that the mesostructure plays a crucial role in the accurate modelling of dental laser ablation.

  18. Creation of a Tumor-Mimic Model Using a Muscle Paste for Radiofrequency Ablation of the Lung

    SciTech Connect

    Kawai, T. Kaminou, T.; Sugiura, K.; Hashimoto, M.; Ohuchi, Y.; Adachi, A.; Fujioka, S.; Ito, H.; Nakamura, K.; Ogawa, T.

    2009-03-15

    The purpose of this study was to develop an easily created tumor-mimic model and evaluate its efficacy for radiofrequency ablation (RFA) of the lung. The bilateral lungs of eight living adult swine were used. A tumor-mimic model was made by percutaneous injection of 1.0 ml muscle paste through the bone biopsy needle into the lung. An RFA probe was then inserted into the tumor mimics immediately after tumor creation. Ablation time, tissue impedance, and temperature were recorded. The tumor mimics and their coagulated regions were evaluated microscopically and macroscopically. The muscle paste was easily injected into the lung parenchyma through the bone biopsy needle and well visualized under fluoroscopy. In 10 of 12 sites the tumor mimics were oval shaped, localized, and homogeneous on gross specimens. Ten tumor mimics were successfully ablated, and four locations were ablated in the normal lung parenchyma as controls. In the tumor and normal lung parenchyma, ablation times were 8.9 {+-} 3.5 and 4.4 {+-} 1.6 min, respectively; tissue impedances at the start of ablation were 100.6 {+-} 16.6 and 145.8 {+-} 26.8 {Omega}, respectively; and temperatures at the end of ablation were 66.0 {+-} 7.9 and 57.5 {+-} 7.6{sup o}C, respectively. The mean size of tumor mimics was 13.9 x 8.2 mm, and their coagulated area was 18.8 x 13.1 mm. In the lung parenchyma, the coagulated area was 15.3 x 12.0 mm. In conclusion, our tumor-mimic model using muscle paste can be easily and safely created and can be ablated using the ablation algorithm in the clinical setting.

  19. Modeling Climate Dynamically

    ERIC Educational Resources Information Center

    Walsh, Jim; McGehee, Richard

    2013-01-01

    A dynamical systems approach to energy balance models of climate is presented, focusing on low order, or conceptual, models. Included are global average and latitude-dependent, surface temperature models. The development and analysis of the differential equations and corresponding bifurcation diagrams provides a host of appropriate material for…

  20. SLAM: a sodium-limestone concrete ablation model

    SciTech Connect

    Suo-Anttila, A.J.

    1983-12-01

    SLAM is a three-region model, containing a pool (sodium and reaction debris) region, a dry (boundary layer and dehydrated concrete) region, and a wet (hydrated concrete) region. The model includes a solution to the mass, momentum, and energy equations in each region. A chemical kinetics model is included to provide heat sources due to chemical reactions between the sodium and the concrete. Both isolated model as well as integrated whole code evaluations have been made with good results. The chemical kinetics and water migration models were evaluated separately, with good results. Several small and large-scale sodium limestone concrete experiments were simulated with reasonable agreement between SLAM and the experimental results. The SLAM code was applied to investigate the effects of mixing, pool temperature, pool depth and fluidization. All these phenomena were found to be of significance in the predicted response of the sodium concrete interaction. Pool fluidization is predicted to be the most important variable in large scale interactions.

  1. Theoretical modeling for radiofrequency ablation: state-of-the-art and challenges for the future

    PubMed Central

    Berjano, Enrique J

    2006-01-01

    Radiofrequency ablation is an interventional technique that in recent years has come to be employed in very different medical fields, such as the elimination of cardiac arrhythmias or the destruction of tumors in different locations. In order to investigate and develop new techniques, and also to improve those currently employed, theoretical models and computer simulations are a powerful tool since they provide vital information on the electrical and thermal behavior of ablation rapidly and at low cost. In the future they could even help to plan individual treatment for each patient. This review analyzes the state-of-the-art in theoretical modeling as applied to the study of radiofrequency ablation techniques. Firstly, it describes the most important issues involved in this methodology, including the experimental validation. Secondly, it points out the present limitations, especially those related to the lack of an accurate characterization of the biological tissues. After analyzing the current and future benefits of this technique it finally suggests future lines and trends in the research of this area. PMID:16620380

  2. Histological evaluation of vertical laser channels from ablative fractional resurfacing: an ex vivo pig skin model.

    PubMed

    Skovbølling Haak, Christina; Illes, Monica; Paasch, Uwe; Hædersdal, Merete

    2011-07-01

    Ablative fractional resurfacing (AFR) represents a new treatment potential for various skin conditions and new laser devices are being introduced. It is important to gain information about the impact of laser settings on the dimensions of the created laser channels for obtaining a safe and efficient treatment outcome. The aim of this study was to establish a standard model to document the histological tissue damage profiles after AFR and to test a new laser device at diverse settings. Ex vivo abdominal pig skin was treated with a MedArt 620, prototype fractional carbon dioxide (CO(2)) laser (Medart, Hvidovre, Denmark) delivering single microbeams (MB) with a spot size of 165 μm. By using a constant pulse duration of 2 ms, intensities of 1-18 W, single and 2-4 stacked pulses, energies were delivered in a range from 2-144 mJ/MB. Histological evaluations included 3-4 high-quality histological measurements for each laser setting (n = 28). AFR created cone-shaped laser channels. Ablation depths varied from reaching the superficial dermis (2 mJ, median 41 μm) to approaching the subcutaneous fat (144 mJ, median 1,943 μm) and correlated to the applied energy levels in an approximate linear relation (r(2) = 0.84, p < 0.001). The dermal ablation width increased slightly within the energy range of 4-144 mJ (median 163 μm). The thickness of the coagulation zone reached a plateau around 65 μm at energies levels above 16 mJ. The calculated volumes of ablated tissue increased with increasing energies. We suggest this ex vivo pig skin model to characterize AFR laser channels histologically.

  3. Chemical models for simulating single-walled nanotube production in arc vaporization and laser ablation processes

    NASA Technical Reports Server (NTRS)

    Scott, Carl D.

    2004-01-01

    Chemical kinetic models for the nucleation and growth of clusters and single-walled carbon nanotube (SWNT) growth are developed for numerical simulations of the production of SWNTs. Two models that involve evaporation and condensation of carbon and metal catalysts, a full model involving all carbon clusters up to C80, and a reduced model are discussed. The full model is based on a fullerene model, but nickel and carbon/nickel cluster reactions are added to form SWNTs from soot and fullerenes. The full model has a large number of species--so large that to incorporate them into a flow field computation for simulating laser ablation and arc processes requires that they be simplified. The model is reduced by defining large clusters that represent many various sized clusters. Comparisons are given between these models for cases that may be applicable to arc and laser ablation production. Solutions to the system of chemical rate equations of these models for a ramped temperature profile show that production of various species, including SWNTs, agree to within about 50% for a fast ramp, and within 10% for a slower temperature decay time.

  4. High speed direct imaging of thin metal film ablation by movie-mode dynamic transmission electron microscopy

    NASA Astrophysics Data System (ADS)

    Hihath, Sahar; Santala, Melissa K.; Cen, Xi; Campbell, Geoffrey; van Benthem, Klaus

    2016-03-01

    Obliteration of matter by pulsed laser beams is not only prevalent in science fiction movies, but finds numerous technological applications ranging from additive manufacturing over machining of micro- and nanostructured features to health care. Pulse lengths ranging from femtoseconds to nanoseconds are utilized at varying laser beam energies and pulse lengths, and enable the removal of nanometric volumes of material. While the mechanisms for removal of material by laser irradiation, i.e., laser ablation, are well understood on the micrometer length scale, it was previously impossible to directly observe obliteration processes on smaller scales due to experimental limitations for the combination of nanometer spatial and nanosecond temporal resolution. Here, we report the direct observation of metal thin film ablation from a solid substrate through dynamic transmission electron microscopy. Quantitative analysis reveals liquid-phase dewetting of the thin-film, followed by hydrodynamic sputtering of nano- to submicron sized metal droplets. We discovered unexpected fracturing of the substrate due to evolving thermal stresses. This study confirms that hydrodynamic sputtering remains a valid mechanism for droplet expulsion on the nanoscale, while irradiation induced stress fields represent limit laser processing of nanostructured materials. Our results allow for improved safety during laser ablation in manufacturing and medical applications.

  5. High speed direct imaging of thin metal film ablation by movie-mode dynamic transmission electron microscopy.

    PubMed

    Hihath, Sahar; Santala, Melissa K; Cen, Xi; Campbell, Geoffrey; van Benthem, Klaus

    2016-03-11

    Obliteration of matter by pulsed laser beams is not only prevalent in science fiction movies, but finds numerous technological applications ranging from additive manufacturing over machining of micro- and nanostructured features to health care. Pulse lengths ranging from femtoseconds to nanoseconds are utilized at varying laser beam energies and pulse lengths, and enable the removal of nanometric volumes of material. While the mechanisms for removal of material by laser irradiation, i.e., laser ablation, are well understood on the micrometer length scale, it was previously impossible to directly observe obliteration processes on smaller scales due to experimental limitations for the combination of nanometer spatial and nanosecond temporal resolution. Here, we report the direct observation of metal thin film ablation from a solid substrate through dynamic transmission electron microscopy. Quantitative analysis reveals liquid-phase dewetting of the thin-film, followed by hydrodynamic sputtering of nano- to submicron sized metal droplets. We discovered unexpected fracturing of the substrate due to evolving thermal stresses. This study confirms that hydrodynamic sputtering remains a valid mechanism for droplet expulsion on the nanoscale, while irradiation induced stress fields represent limit laser processing of nanostructured materials. Our results allow for improved safety during laser ablation in manufacturing and medical applications.

  6. High speed direct imaging of thin metal film ablation by movie-mode dynamic transmission electron microscopy

    DOE PAGES

    Hihath, Sahar; Santala, Melissa K.; Cen, Xi; ...

    2016-03-11

    Obliteration of matter by pulsed laser beams is not only prevalent in science fiction movies, but finds numerous technological applications ranging from additive manufacturing over machining of micro- and nanostructured features to health care. Pulse lengths ranging from femtoseconds to nanoseconds are utilized at varying laser beam energies and pulse lengths, and enable the removal of nanometric volumes of material. While the mechanisms for removal of material by laser irradiation, i.e., laser ablation, are well understood on the micrometer length scale, it was previously impossible to directly observe obliteration processes on smaller scales due to experimental limitations for the combinationmore » of nanometer spatial and nanosecond temporal resolution. Here, we report the direct observation of metal thin film ablation from a solid substrate through dynamic transmission electron microscopy. Quantitative analysis reveals liquid-phase dewetting of the thin-film, followed by hydrodynamic sputtering of nano- to submicron sized metal droplets. We discovered unexpected fracturing of the substrate due to evolving thermal stresses. This study confirms that hydrodynamic sputtering remains a valid mechanism for droplet expulsion on the nanoscale, while irradiation induced stress fields represent limit laser processing of nanostructured materials. Ultimately, our results allow for improved safety during laser ablation in manufacturing and medical applications.« less

  7. High speed direct imaging of thin metal film ablation by movie-mode dynamic transmission electron microscopy

    SciTech Connect

    Hihath, Sahar; Santala, Melissa K.; Cen, Xi; Campbell, Geoffrey; van Benthem, Klaus

    2016-03-11

    Obliteration of matter by pulsed laser beams is not only prevalent in science fiction movies, but finds numerous technological applications ranging from additive manufacturing over machining of micro- and nanostructured features to health care. Pulse lengths ranging from femtoseconds to nanoseconds are utilized at varying laser beam energies and pulse lengths, and enable the removal of nanometric volumes of material. While the mechanisms for removal of material by laser irradiation, i.e., laser ablation, are well understood on the micrometer length scale, it was previously impossible to directly observe obliteration processes on smaller scales due to experimental limitations for the combination of nanometer spatial and nanosecond temporal resolution. Here, we report the direct observation of metal thin film ablation from a solid substrate through dynamic transmission electron microscopy. Quantitative analysis reveals liquid-phase dewetting of the thin-film, followed by hydrodynamic sputtering of nano- to submicron sized metal droplets. We discovered unexpected fracturing of the substrate due to evolving thermal stresses. This study confirms that hydrodynamic sputtering remains a valid mechanism for droplet expulsion on the nanoscale, while irradiation induced stress fields represent limit laser processing of nanostructured materials. Ultimately, our results allow for improved safety during laser ablation in manufacturing and medical applications.

  8. High speed direct imaging of thin metal film ablation by movie-mode dynamic transmission electron microscopy

    PubMed Central

    Hihath, Sahar; Santala, Melissa K.; Cen, Xi; Campbell, Geoffrey; van Benthem, Klaus

    2016-01-01

    Obliteration of matter by pulsed laser beams is not only prevalent in science fiction movies, but finds numerous technological applications ranging from additive manufacturing over machining of micro- and nanostructured features to health care. Pulse lengths ranging from femtoseconds to nanoseconds are utilized at varying laser beam energies and pulse lengths, and enable the removal of nanometric volumes of material. While the mechanisms for removal of material by laser irradiation, i.e., laser ablation, are well understood on the micrometer length scale, it was previously impossible to directly observe obliteration processes on smaller scales due to experimental limitations for the combination of nanometer spatial and nanosecond temporal resolution. Here, we report the direct observation of metal thin film ablation from a solid substrate through dynamic transmission electron microscopy. Quantitative analysis reveals liquid-phase dewetting of the thin-film, followed by hydrodynamic sputtering of nano- to submicron sized metal droplets. We discovered unexpected fracturing of the substrate due to evolving thermal stresses. This study confirms that hydrodynamic sputtering remains a valid mechanism for droplet expulsion on the nanoscale, while irradiation induced stress fields represent limit laser processing of nanostructured materials. Our results allow for improved safety during laser ablation in manufacturing and medical applications. PMID:26965073

  9. Dynamics of Molecular Emission Features from Nanosecond, Femtosecond Laser and Filament Ablation Plasmas

    SciTech Connect

    Harilal, Sivanandan S.; Yeak, J.; Brumfield, Brian E.; Suter, Jonathan D.; Phillips, Mark C.

    2016-06-15

    The evolutionary paths of molecular species and nanoparticles in laser ablation plumes are not well understood due to the complexity of numerous physical processes that occur simultaneously in a transient laser-plasma system. It is well known that the emission features of ions, atoms, molecules and nanoparticles in a laser ablation plume strongly depend on the laser irradiation conditions. In this letter we report the temporal emission features of AlO molecules in plasmas generated using a nanosecond laser, a femtosecond laser and filaments generated from a femtosecond laser. Our results show that, at a fixed laser energy, the persistence of AlO is found to be highest and lowest in ns and filament laser plasmas respectively while molecular species are formed at early times for both ultrashort pulse (fs and filament) generated plasmas. Analysis of the AlO emission band features show that the vibrational temperature of AlO decays rapidly in filament assisted laser ablation plumes.

  10. Exceptional ablation season 2009 on the Zhadang Glacier, Central Tibet - An approach combining field measurements and numerical modelling

    NASA Astrophysics Data System (ADS)

    Maussion, Fabien; Huintjes, Eva; Schneider, Christoph; Scherer, Dieter

    2010-05-01

    The central goal of the project DynRG-TiP (Dynamic Response of Glaciers on the Tibetan Plateau) is improving our understanding of atmosphere-cryosphere interactions on the Tibetan Plateau (TiP) by adding new data and improved methods combining field studies, remote sensing and numerical modelling. The setup of two automatic weather stations (AWS) on the slopes of Zhadang (north exposed) and Tangse River No. 2 Glacier (south exposed) - 5.850 m a.s.l, Western Nyainqentanglha Mountains (NyM) - in May 2009, joining the previous installations of the Chinese co-operating partners from the Institute of Tibetan Plateau Research, make the Zhadang glacier one of the most extensively equipped and best observed glaciers in Central Asia. Based on previous studies (Kang et al., 2009), a summer ablation lower than 2 m w.e. was expected at the positions of the AWS. However, at the time of the second field campaign in October 2009, both stations had fallen over. This incidence occurred already in mid-July, despite of the mast being fixed three meters deep in the ice. At that time approximately half of the ablation period had passed and the estimated lowering of the surface already summed up to about 2 m. The ice-atmosphere interaction processes leading to this exceptional high melt rates are studied using the data gathered from the two AWS, supplemented by the output of the mesoscale Weather Research and Forecasting (WRF-ARW) model. The downscaling approach using two-way nesting, following Box et al., 2006 and Caldwell et al., 2009, allows substantial improvements in surface mass balance (SMB) computations, providing additional spatial information on long-term time series. A first assessment of the downscaling capabilities of the WRF modelling system is realized for the ablation season 2009, analyzing the output of a 2 km grid resolution nested domain centered on the NyM. References: Box, J. E., Bromwich, D. H., Veenhuis, B. A., Bai, L.-S., Stroeve, J. C., Rogers, J. C., Steffen, K

  11. Dynamic model for biospeckle.

    PubMed

    Paixão, Crysttian Arantes; da Costa, Antonio Tavares

    2013-06-01

    This paper reports the development of a simple dynamic microscopic model to describe the main features of the phenomenon known as dynamic speckle, or biospeckle. Biospeckle is an interference pattern formed when a biological surface is illuminated with coherent light. The dynamic characteristics of biospeckle have been investigated as possible tools for assessing the quality of biological products. Our model, despite its simplicity, was able to reproduce qualitatively the main features of biospeckle. We were able to correlate variations in a microscopic parameter associated with movement of the particles comprising the organic surface with changes in a macroscopic parameter that measures the change rate of a dynamic interference pattern. We showed that this correlation occurs only within a limited range of parameter microscope values. We also showed how our model was able to describe nonuniform surfaces composed of more than one type of particles.

  12. High Fidelity Computer Models for Prospective Treatment Planning of RF Ablation with in vitro Experimental Correlation

    PubMed Central

    Fuentes, David; Cardan, Rex; Stafford, R. Jason; Yung, Joshua; Dodd, Gerald D.; Feng, Yusheng

    2010-01-01

    Purpose To evaluate the accuracy of computer simulation in predicting the thermal damage region produced by a radiofrequency (RF) ablation procedure in an in vitro perfused bovine liver model. The thermal dose end point in the liver model is used to quantitatively assess computer prediction for use in prospective treatment planning of RF ablation procedures. Materials and Methods Geometric details of the tri-cooled-tip electrode were modeled. The resistive heating of a pulsed voltage delivery was simulated in 4D using finite element methods (FEM) implemented on high performance parallel computing architectures. A range of physically realistic blood perfusion parameters, 3.6–53.6kg/s/m3 were considered in the computer model. An Arrhenius damage model was used to predict the thermal dose. Dice similarity coefficients (DSC) were the metric used to compare computational predictions to T1-weighted contrast enhanced images of the damage obtained from a RF procedure performed on an in vitro perfused bovine liver model. Results For a perfusion parameter greater than 16.3kg/s/m3, simulations predict the temporal evolution of the damaged volume is perfusion limited and will reach a maximum value. Over a range of physically meaningful perfusion values, 16.3–33.1kg/s/m3, the predicted thermal dose reaches the maximum damage volume within two minutes of the delivery and is in good agreement, DSC > 0.7, with experimental measurements obtained from the perfused liver model. Conclusions As measured by the computed volumetric DSC, computer prediction accuracy of the thermal dose shows good correlation with ablation lesions measured in vitro perfused bovine liver models over a range of physically realistic perfusion values. PMID:20920840

  13. Dynamic response of laser ablative shock waves from coated and uncoated amorphous boron nanoparticles

    NASA Astrophysics Data System (ADS)

    Chelikani, Leela; Pinnoju, Venkateshwarlu; Verma, Pankaj; Singh, Raja V.; Kiran, P. Prem

    2017-01-01

    Laser ablative shock waves from compacted nano-sized powders was studied using time resolved shadowgraphy technique. Shock wave properties such as propagation of shock front, contact front, velocity and pressure behind the shock front were studied from nano-sized powders of Amorphous Boron (B) and Lithium Fluoride coated Boron (LiF-B) with the material density of 2.34 g/cc. The experiments were performed to understand the challenging aspects of laser-powder interactions to explore their application potential for laser ablation Propulsion (LAP).

  14. Thermal vapor bubble and pressure dynamics during infrared laser ablation of tissue

    NASA Astrophysics Data System (ADS)

    Wagner, Wolfgang; Sokolow, Adam; Pearlstein, Robert; Edwards, Glenn

    2009-01-01

    Free-electron laser irradiation can superheat tissue water, driving thermal vapor bubbles confined by tissue matrix and leading to mechanical tissue failure (ablation). Acoustic transients propagating from an ablation cavity were recorded with a polarization quadrature, interferometric vibrometer. For 3.0 μm infrared irradiation, the shocklike transients with peak pressures in the megapascal range indicate amplification due to bubble collapse. In contrast, for 6.45 μm irradiation, elastic transients with peak pressures in the 0.1 MPa range indicate tissue failure during bubble growth.

  15. Phospholamban Ablation Using CRISPR/Cas9 System Improves Mortality in a Murine Heart Failure Model

    PubMed Central

    Kaneko, Manami; Hashikami, Kentarou; Yamamoto, Satoshi; Matsumoto, Hirokazu; Nishimoto, Tomoyuki

    2016-01-01

    Sarcoplasmic reticulum Ca2+-ATPase 2a (SERCA2a) and its inhibitory protein called phospholamban (PLN) are pivotal for Ca2+ handling in cardiomyocyte and are known that their expression level and activity were changed in the heart failure patients. To examine whether PLN inhibition can improve survival rate as well as cardiac function in heart failure, we performed PLN ablation in calsequestrin overexpressing (CSQ-Tg) mice, a severe heart failure model, using clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated (Cas) system. According this method, generation rate of PLN wild type mice (PLN copy >0.95) and PLN homozygous knockout (KO) mice (PLN copy <0.05) were 39.1% and 10.5%, respectively. While CSQ overexpression causes severe heart failure symptoms and premature death, a significant ameliorating effect on survival rate was observed in PLN homozygous KO/CSQ-Tg mice compared to PLN wild type/CSQ-Tg mice (median survival days are 55 and 50 days, respectively). Measurement of cardiac function with cardiac catheterization at the age of 5 weeks revealed that PLN ablation improved cardiac function in CSQ-Tg mice without affecting heart rate and blood pressure. Furthermore, increases in atrial and lung weight, an index of congestion, were significantly inhibited by PLN ablation. These results suggest that PLN deletion would be a promising approach to improve both mortality and cardiac function in the heart failure. PMID:27992596

  16. Modeling of lung's electrical impedance using fractional calculus for analysis of heat generation during RF-ablation.

    PubMed

    Yamazaki, Nozomu; Kobayashi, Yo; Kikuchi, Hayato; Isobe, Yosuke; Lu, XiaoWei; Miyashita, Tomoyuki; Fujie, Masakatsu G

    2014-01-01

    Recently, Radio Frequency Ablation (RFA) is becoming a popular therapy for various cancers such as liver, breast, or lung cancer. RFA is one kinds of thermal therapy. However, it has been often reported about excessive ablation or non-ablation due to difficult control of ablation energy. In order to solve these difficulties, we have been proposed robotized RF-ablation system for precise cancer treatment. We have been tried to control heat energy by control of electromagnetic-wave frequency. In this paper, we reported about relation among electrical impedance of lung, lung's internal air volumes, and heat energy by use of electromagnetic-wave. In case of RFA for lung cancer, heat energy depends on electrical impedance and lung's internal air volumes. Electrical impedance has the dependence of electromagnetic-wave frequency and the dependence of lung's internal air volumes. Therefore, firstly we considered about fractional calculus model between lung's internal air volumes and electrical impedance. Secondly, we measured electric impedance frequency characteristic of lung with change of lung's internal air volumes. The measured and modeled results showed that use of fractional calculus realized high accurate model for electrical impedance of lung. And, from the results of numerical analysis of heat energy, it is supposed that control of electromagnetic-wave frequency has a small effectiveness for lung tissue ablation even if lung includes abundant air.

  17. History, ethics, advantages and limitations of experimental models for hepatic ablation

    PubMed Central

    Ong, Seok Ling; Gravante, Gianpiero; Metcalfe, Matthew S; Dennison, Ashley R

    2013-01-01

    Numerous techniques developed in medicine require careful evaluation to determine their indications, limitations and potential side effects prior to their clinical use. At present this generally involves the use of animal models which is undesirable from an ethical standpoint, requires complex and time-consuming authorization, and is very expensive. This process is exemplified in the development of hepatic ablation techniques, starting experiments on explanted livers and progressing to safety and efficacy studies in living animals prior to clinical studies. The two main approaches used are ex vivo isolated non-perfused liver models and in vivo animal models. Ex vivo non perfused models are less expensive, easier to obtain but not suitable to study the heat sink effect or experiments requiring several hours. In vivo animal models closely resemble clinical subjects but often are expensive and have small sample sizes due to ethical guidelines. Isolated perfused ex vivo liver models have been used to study drug toxicity, liver failure, organ transplantation and hepatic ablation and combine advantages of both previous models. PMID:23345935

  18. Physical processes of laser tissue ablation

    NASA Astrophysics Data System (ADS)

    Furzikov, Nickolay P.

    1991-05-01

    The revised ablation model applicable to homogeneous tissues is presented. It is based on the thermal mechanism and involves the instability of the laserinduced evaporation (thermodestruction) front the growth of the surface ripple structure the interference of the laser wave and of the surface wave arising by diffraction on the ripples Beer''s law violation the pulsed thermodestruction of the organic structural component the tissue water boiling and gas dynamic expansion of the resulting products into the surrounding medium which is followed by the shock wave formation. The UV and IR ablation schemes were implemented and compared to the corneal ablation experiments. The initial ablation pressure and temperature are given restored from the timeofflight measurements of the supersonic expansion of the product. 1.

  19. Dynamic causal modelling revisited.

    PubMed

    Friston, K J; Preller, Katrin H; Mathys, Chris; Cagnan, Hayriye; Heinzle, Jakob; Razi, Adeel; Zeidman, Peter

    2017-02-17

    This paper revisits the dynamic causal modelling of fMRI timeseries by replacing the usual (Taylor) approximation to neuronal dynamics with a neural mass model of the canonical microcircuit. This provides a generative or dynamic causal model of laminar specific responses that can generate haemodynamic and electrophysiological measurements. In principle, this allows the fusion of haemodynamic and (event related or induced) electrophysiological responses. Furthermore, it enables Bayesian model comparison of competing hypotheses about physiologically plausible synaptic effects; for example, does attentional modulation act on superficial or deep pyramidal cells - or both? In this technical note, we describe the resulting dynamic causal model and provide an illustrative application to the attention to visual motion dataset used in previous papers. Our focus here is on how to answer long-standing questions in fMRI; for example, do haemodynamic responses reflect extrinsic (afferent) input from distant cortical regions, or do they reflect intrinsic (recurrent) neuronal activity? To what extent do inhibitory interneurons contribute to neurovascular coupling? What is the relationship between haemodynamic responses and the frequency of induced neuronal activity? This paper does not pretend to answer these questions; rather it shows how they can be addressed using neural mass models of fMRI timeseries.

  20. On the correlation between the photoexcitation pathways and the critical energies required for ablation of poly(methyl methacrylate): A molecular dynamics study

    SciTech Connect

    Conforti, Patrick F.; Prasad, Manish; Garrison, Barbara J.

    2008-05-15

    The energetics initiating ablation in poly(methyl methacrylate) (PMMA) are studied using molecular dynamics (MD) simulation. The critical energy to initiate ablation in PMMA following the absorption of photons is investigated for two penetration depths along a range of fluences using a coarse-grained, hybrid Monte Carlo-MD scheme. Both heating and direct bond scission are simulated separately after photon absorption with additional transformation of material occurring via chemical reactions following the photochemical bond cleavage. For a given type of absorption and reaction channel, a critical energy can well describe the amount of energy required to initiate ablation. The simulations show a decrease in the critical energy when a greater amount of photochemistry is introduced in the system. The simulations complement experimental studies and elucidate how enhanced photochemistry lowers ablation thresholds in polymer substrates.

  1. Nonthermal ablation of deep brain targets: A simulation study on a large animal model

    PubMed Central

    Top, Can Barış; White, P. Jason; McDannold, Nathan J.

    2016-01-01

    Purpose: Thermal ablation with transcranial MRI-guided focused ultrasound (FUS) is currently limited to central brain targets because of heating and other beam effects caused by the presence of the skull. Recently, it was shown that it is possible to ablate tissues without depositing thermal energy by driving intravenously administered microbubbles to inertial cavitation using low-duty-cycle burst sonications. A recent study demonstrated that this ablation method could ablate tissue volumes near the skull base in nonhuman primates without thermally damaging the nearby bone. However, blood–brain disruption was observed in the prefocal region, and in some cases, this region contained small areas of tissue damage. The objective of this study was to analyze the experimental model with simulations and to interpret the cause of these effects. Methods: The authors simulated prior experiments where nonthermal ablation was performed in the brain in anesthetized rhesus macaques using a 220 kHz clinical prototype transcranial MRI-guided FUS system. Low-duty-cycle sonications were applied at deep brain targets with the ultrasound contrast agent Definity. For simulations, a 3D pseudospectral finite difference time domain tool was used. The effects of shear mode conversion, focal steering, skull aberrations, nonlinear propagation, and the presence of skull base on the pressure field were investigated using acoustic and elastic wave propagation models. Results: The simulation results were in agreement with the experimental findings in the prefocal region. In the postfocal region, however, side lobes were predicted by the simulations, but no effects were evident in the experiments. The main beam was not affected by the different simulated scenarios except for a shift of about 1 mm in peak position due to skull aberrations. However, the authors observed differences in the volume, amplitude, and distribution of the side lobes. In the experiments, a single element passive

  2. Validation of PICA Ablation and Thermal-Response Model at Low Heat Flux

    NASA Technical Reports Server (NTRS)

    Milos, Frank S.; Chen, Yih-Kanq

    2009-01-01

    Phenolic Impregnated Carbon Ablator (PICA) was the forebody heatshield material on the Stardust sample-return capsule and is also a primary candidate material for the Mars Science Lander (MSL), the Orion Crew Module, and the SpaceX Dragon vehicle. As part of the heatshield qualification for Orion, physical and thermal properties of virgin and charred PICA were measured, and an ablation and thermal response model was developed. We validated the model by comparing it with recession and temperature data from stagnation arcjet tests conducted over a wide range of stagnation heat flux of 107 to 1102 W/sq cm. The effect of orthotropic thermal conductivity was evident in the thermal response of the arcjet models. In general, model predictions compared well with the data; however, the uncertainty of the recession prediction was greatest for heat fluxes below 200 W/sq cm. More recent MSL testing focused on the low heat flux regime of 45 to 250 W/sq cm. The new results confirm the recession uncertainty, especially for pressures below 6 kPa. In this work we focus on improving the model predictions for MSL and Orion tests below 250 W/sq cm.

  3. Modeling of gas ionization and plasma flow in ablative pulsed plasma thrusters

    NASA Astrophysics Data System (ADS)

    Huang, Tiankun; Wu, Zhiwen; Liu, Xiangyang; Xie, Kan; Wang, Ningfei; Cheng, Yue

    2016-12-01

    A one-dimensional model to study the gas ionization and plasma flow in ablative pulsed plasma thrusters(APPTs) is established in this paper. The discharge process of the APPT used in the LES-6 satellite is simulated to validate the model. The simulation results for the impulse bit and propellant utilization give values of 29.05 μN s and 9.56%, respectively, which are in good agreement with experimental results. To test the new ionization sub-model, the discharge process of a particular APPT, XPPT-1, is simulated, and a numerical result for the propellant utilization of 62.8% is obtained, which also agrees well with experiment. The gas ionization simulation results indicate that an APPT with a lower average propellant ablation rate and higher average electric field intensity between electrodes should have higher propellant utilization. The plasma density distribution between the electrodes of APPTs can also be obtained using the new model, and the numerical results show that the plasma generation and flow are discontinuous, which is in good agreement with past experimental results of high-speed photography. This model provides a new tool with which to study the physical mechanisms of APPTs and a reference for the design of high-performance APPTs.

  4. A Short Review of Ablative-Material Response Models and Simulation Tools

    NASA Technical Reports Server (NTRS)

    Lachaud, Jean; Magin, Thierry E.; Cozmuta, Ioana; Mansour, Nagi N.

    2011-01-01

    A review of the governing equations and boundary conditions used to model the response of ablative materials submitted to a high-enthalpy flow is proposed. The heritage of model-development efforts undertaken in the 1960s is extremely clear: the bases of the models used in the community are mathematically equivalent. Most of the material-response codes implement a single model in which the equation parameters may be modified to model different materials or conditions. The level of fidelity of the models implemented in design tools only slightly varies. Research and development codes are generally more advanced but often not as robust. The capabilities of each of these codes are summarized in a color-coded table along with research and development efforts currently in progress.

  5. Nonequilibrium Ablation of Phenolic Impregnated Carbon Ablator

    NASA Technical Reports Server (NTRS)

    Milos, Frank S.; Chen, Yih K.; Gokcen, Tahir

    2012-01-01

    In previous work, an equilibrium ablation and thermal response model for Phenolic Impregnated Carbon Ablator was developed. In general, over a wide range of test conditions, model predictions compared well with arcjet data for surface recession, surface temperature, in-depth temperature at multiple thermocouples, and char depth. In this work, additional arcjet tests were conducted at stagnation conditions down to 40 W/sq cm and 1.6 kPa. The new data suggest that nonequilibrium effects become important for ablation predictions at heat flux or pressure below about 80 W/sq cm or 10 kPa, respectively. Modifications to the ablation model to account for nonequilibrium effects are investigated. Predictions of the equilibrium and nonequilibrium models are compared with the arcjet data.

  6. Global Modeling of Uranium Molecular Species Formation Using Laser-Ablated Plasmas

    NASA Astrophysics Data System (ADS)

    Curreli, Davide; Finko, Mikhail; Azer, Magdi; Armstrong, Mike; Crowhurst, Jonathan; Radousky, Harry; Rose, Timothy; Stavrou, Elissaios; Weisz, David; Zaug, Joseph

    2016-10-01

    Uranium is chemically fractionated from other refractory elements in post-detonation nuclear debris but the mechanism is poorly understood. Fractionation alters the chemistry of the nuclear debris so that it no longer reflects the chemistry of the source weapon. The conditions of a condensing fireball can be simulated by a low-temperature plasma formed by vaporizing a uranium sample via laser heating. We have developed a global plasma kinetic model in order to model the chemical evolution of U/UOx species within an ablated plasma plume. The model allows to track the time evolution of the density and energy of an uranium plasma plume moving through an oxygen atmosphere of given fugacity, as well as other relevant quantities such as average electron and gas temperature. Comparison of model predictions with absorption spectroscopy of uranium-ablated plasmas provide preliminary insights on the key chemical species and evolution pathways involved during the fractionation process. This project was sponsored by the DoD, Defense Threat Reduction Agency, Grant HDTRA1-16-1-0020. This work was performed in part under the auspices of the U.S. DoE by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  7. Modelling distributed ablation on Juncal Norte Glacier, dry Andes of central Chile

    NASA Astrophysics Data System (ADS)

    Carenzo, Marco; Pellicciotti, Francesca; Helbing, Jakob; Dadic, Ruzica; Burlando, Paolo

    2010-05-01

    In the Aconcagua River Basin, in the dry Andes of central Chile, water resources in summer originate mostly from snow and ice glacier melt. Summer seasons are dry and stable, with precipitation close to zero, low relative humidity and very intense solar radiation. The region's economic activities are dependent on these water resources, but their assessment is still incomplete and an effort is needed to evaluate present and future changes in water from glacier and seasonal snow covers in this area. The main aim of this paper is to simulate glacier melt and runoff from Juncal Norte Glacier, in the upper Aconcagua Basin, using models of various complexity and data requirement. We simulate distributed glacier ablation for two seasons using an energy-balance model (EB) and an enhanced temperature-index model (ETI). Meteorological variables measured at Automatic Weather Stations (AWSs) located on and off-glacier are extrapolated from point observations to the glacier-wide scale. Shortwave radiation is modelled with a parametric model taking into account shading, reflection from slopes and atmospheric transmittance. In the energy-balance model, the longwave radiation flux is computed from Stefan-Boltzmann relationships and turbulent fluxes are calculated using the bulk aerodynamic method. The EB model includes subsurface heat conduction and gravitational redistribution of snow. Glacier runoff is modelled using a linear reservoir approach accounting for the temporal evolution of the system. Hourly simulations of glacier melt are validated against ablation observations (ultrasonic depth gauge and ablation stakes) and runoff measured at the glacier snout is compared to a runoff record obtained from a combination of radar water level measurements and tracer experiments. Results show that extrapolation of meteorological input data, and of temperature in particular, is the largest source of model uncertainty, together with snow water equivalent initial conditions. We explore

  8. Computer Modeling for Microwave Ablation in Breast Cancer Using a Coaxial Slot Antenna

    NASA Astrophysics Data System (ADS)

    Cepeda Rubio, Mario Francisco Jesus; Guerrero López, Geshel David; Valdés Perezgasga, Francisco; Flores García, Francisco; Vera Hernández, Arturo; Leija Salas, Lorenzo

    2015-11-01

    The use of breast cancer mammography screening has allowed detection of a greater number of small carcinomas, and this has facilitated treatment by minimally invasive techniques. Microwave energy is a promising alternative treatment because it can preferentially heat and damage high-water-content breast carcinomas. In order to evaluate the feasibility of using this technique to treat breast cancer, a coaxial slot antenna computer simulation based on an axisymmetric finite element method (FEM) model was used to compare heating differences between cancer and normal breast tissue. Three FEM computer models were developed: in one of them, the coaxial slot antenna was immersed only in homogeneous breast tissue; for the second one, the antenna was immersed only in cancer tissue; for the third one, the antenna was inserted into malignant tissue surrounded by breast tissue. According to the results, the computer modeling demonstrated that the difference in dielectric properties and thermal parameters between malignant and normal adipose-dominated tissue was able to cause preferential heating of tumors during microwave ablation. Furthermore, the ablation zone radius was 42 % larger in the tumor than in low-water-content adipose tissue. Even though this technique requires further research, it is a promising minimally invasive modality for the local treatment of breast cancer.

  9. Developing patient-specific anatomic models for validation of cardiac ablation guidance procedures

    NASA Astrophysics Data System (ADS)

    Holmes, David, III; Rettmann, Maryam; Cameron, Bruce; Camp, Jon; Robb, Richard

    2008-03-01

    Image-guided cardiac ablation has the potential to decrease procedure times and improve clinical outcome for patients with cardiac arrhythmias. There are several proposed methods for integrating patient-specific anatomy into the cardiac ablation procedure; however, these methods require thorough validation. One of the primary challenges in validation is determining ground truth as a standard for comparison. Some validation protocols have been developed for animals models and even in patients; however, these methods can be costly to implement and may increase the risk to patients. We have developed an approach to building realistic patient-specific anatomic models at a low-cost in order to validate the guidance procedure without introducing additional risk to the patients. Using a pre-procedural cardiac computed tomography scan, the blood pool of the left and right atria of a patient are segmented semi-manually. In addition, several anatomical landmarks are identified in the image data. The segmented atria and landmarks are converted into a polygonalized model which is used to build a thin-walled patient-specific blood pool model in a stereo-lithography system. Thumbscrews are inserted into the model at the landmarks. The entire model is embedded in a platinum silicone material which has been shown to have tissue-mimicking properties relative to ultrasound. Once the pliable mold has set, the blood pool model is extracted by dissolving the rigid material. The resulting physical model correctly mimics a specific patient anatomy with embedded fiducals which can be used for validation experiments. The patient-specific anatomic model approach may also be used for pre-surgical practice and training of new interventionalists.

  10. Dynamical model for thyroid

    NASA Astrophysics Data System (ADS)

    Rokni Lamooki, Gholam Reza; Shirazi, Amir H.; Mani, Ali R.

    2015-05-01

    Thyroid's main chemical reactions are employed to develop a mathematical model. The presented model is based on differential equations where their dynamics reflects many aspects of thyroid's behavior. Our main focus here is the well known, but not well understood, phenomenon so called as Wolff-Chaikoff effect. It is shown that the inhibitory effect of intake iodide on the rate of one single enzyme causes a similar effect as Wolff-Chaikoff. Besides this issue, the presented model is capable of revealing other complex phenomena of thyroid hormones homeostasis.

  11. Visual TSUNAMI: A Versatile, User-Friendly, Multidimensional Ablation and Gas-Dynamics Design Code

    SciTech Connect

    Debonnel, C.S.; Wang, T.X.; Suzuki, M.; Garcia, E.; Peterson, P.F.

    2005-05-15

    Gas dynamics phenomena in thick-liquid protected inertial fusion target chambers have been explored since the early 1990's with the help of a series of simulation codes known as TSUNAMI. The code has been recently redesigned entirely to make use of modern programming techniques, languages and software; improve its user-friendliness; and refine its ability to model thick-liquid protected chambers, while expanding its capability to a larger variety of systems. The new code is named 'Visual Tsunami' to emphasize the programming language of its core, Fortran 95, as well as its graphics-based input file builder and output processors. It is aimed at providing a user-friendly design tool for complex systems for which transient gas dynamics phenomena play a key role.

  12. Modeling Initial Stage of Ablation Material Pyrolysis: Graphitic Precursor Formation and Interfacial Effects

    NASA Technical Reports Server (NTRS)

    Desai, Tapan G.; Lawson, John W.; Keblinski, Pawel

    2010-01-01

    Reactive molecular dynamics simulations are used to study initial stage of pyrolysis of ablation materials and their composites with carbon nanotubes and carbon fibers. The products formed during pyrolysis are characterized and water is found as the primary product in all cases. The water formation mechanisms are analyzed and the value of the activation energy for water formation is estimated. A detailed study on graphitic precursor formation reveals the presence of two temperature zones. In the lower temperature zone (less than 2000 K) polymerization occurs resulting in formation of large, stable graphitic precursors, and in the high temperature zone (greater than 2000 K) polymer scission results in formation of short polymer chains/molecules. Simulations performed in the high temperature zone on the phenolic resin composites (with carbon nanotubes and carbon fibers) shows that the presence of interfaces had no substantial effect on the chain scission rate or the activation energy value for water formation.

  13. Nanoparticle-assisted photothermal ablation of brain tumor in an orthotopic canine model

    NASA Astrophysics Data System (ADS)

    Schwartz, Jon A.; Shetty, Anil M.; Price, Roger E.; Stafford, R. Jason; Wang, James C.; Uthamanthil, Rajesh K.; Pham, Kevin; McNichols, Roger J.; Coleman, Chris L.; Payne, J. Donald

    2009-02-01

    We report on a pilot study demonstrating a proof of concept for the passive delivery of nanoshells to an orthotopic tumor where they induce a local, confined therapeutic response distinct from that of normal brain resulting in the photo-thermal ablation of canine Transmissible Venereal Tumor (cTVT) in a canine brain model. cTVT fragments grown in SCID mice were successfully inoculated in the parietal lobe of immuno-suppressed, mixed-breed hound dogs. A single dose of near-infrared absorbing, 150 nm nanoshells was infused intravenously and allowed time to passively accumulate in the intracranial tumors which served as a proxy for an orthotopic brain metastasis. The nanoshells accumulated within the intracranial cTVT suggesting that its neo-vasculature represented an interruption of the normal blood-brain barrier. Tumors were thermally ablated by percutaneous, optical fiber-delivered, near-infrared radiation using a 3.5 W average, 3-minute laser dose at 808 nm that selectively elevated the temperature of tumor tissue to 65.8+/-4.1ºC. Identical laser doses applied to normal white and gray matter on the contralateral side of the brain yielded sub-lethal temperatures of 48.6+/-1.1ºC. The laser dose was designed to minimize thermal damage to normal brain tissue in the absence of nanoshells and compensate for variability in the accumulation of nanoshells in tumor. Post-mortem histopathology of treated brain sections demonstrated the effectiveness and selectivity of the nanoshell-assisted thermal ablation.

  14. Carbon dioxide laser ablation with immediate autografting in a full-thickness porcine burn model.

    PubMed Central

    Glatter, R D; Goldberg, J S; Schomacker, K T; Compton, C C; Flotte, T J; Bua, D P; Greaves, K W; Nishioka, N S; Sheridan, R L

    1998-01-01

    OBJECTIVE: To compare the long-term clinical and histologic outcome of immediate autografting of full-thickness burn wounds ablated with a high-power continuous-wave CO2 laser to sharply débrided wounds in a porcine model. SUMMARY BACKGROUND DATA: Continuous-wave CO2 lasers have performed poorly as tools for burn excision because the large amount of thermal damage to viable subeschar tissues precluded successful autografting. However, a new technique, in which a high-power laser is rapidly scanned over the eschar, results in eschar vaporization without significant damage to underlying viable tissues, allowing successful immediate autografting. METHODS: Full-thickness paravertebral burn wounds measuring 36 cm2 were created on 11 farm swine. Wounds were ablated to adipose tissue 48 hours later using either a surgical blade or a 150-Watt continuous-wave CO2 laser deflected by an x-y galvanometric scanner that translated the beam over the tissue surface, removing 200 microm of tissue per scan. Both sites were immediately autografted and serially evaluated clinically and histologically for 180 days. RESULTS: The laser-treated sites were nearly bloodless. The mean residual thermal damage was 0.18+/-0.05 mm. The mean graft take was 96+/-11% in manual sites and 93+/-8% in laser sites. On postoperative day 7, the thickness of granulation tissue at the graft-wound bed interface was greater in laser-debrided sites. By postoperative day 180, the manual and laser sites were histologically identical. Vancouver scar assessment revealed no differences in scarring at postoperative day 180. CONCLUSIONS: Long-term scarring, based on Vancouver scar assessments and histologic evaluation, was equivalent at 6 months in laser-ablated and sharply excised sites. Should this technology become practical, the potential clinical implications include a reduction in surgical blood loss without sacrifice of immediate engraftment rates or long-term outcome. Images Figure 1. Figure 2. Figure 3

  15. Guiding heat in laser ablation of metals on ultrafast timescales: an adaptive modeling approach on aluminum

    NASA Astrophysics Data System (ADS)

    Colombier, J. P.; Combis, P.; Audouard, E.; Stoian, R.

    2012-01-01

    Using an optimal control hydrodynamic modeling approach and irradiation adaptive time-design, we indicate excitation channels maximizing heat load in laser ablated aluminum at low energy costs. The primary relaxation paths leading to an emerging plasma are particularly affected. With impulsive pulses on ps pedestals, thermodynamic trajectories are preferentially guided in ionized domains where variations in ionization degree occur. This impinges on the gas-transformation mechanisms and triggers a positive bremsstrahlung absorption feedback. The highest temperatures are thus obtained in the expanding ionized matter after a final impulsive excitation, as the electronic energy relaxes recombinatively. The drive relies on transitions to weakly coupled front plasmas at the critical optical density, favoring energy confinement with low mechanical work. Alternatively, robust collisional heating occurs in denser regions above the critical point. This impacts the nature, the excitation degree and the energy content of the ablated matter. Adaptive modeling can therefore provide optimal strategies with information on physical variables not readily accessible and, as experimentally confirmed, databases for pulse shapes with interest in remote spectroscopy, laser-induced matter transfer, laser material processing and development of secondary sources.

  16. Studies on linear, nonlinear optical and excited state dynamics of silicon nanoparticles prepared by picosecond laser ablation

    SciTech Connect

    Hamad, Syed; Nageswara Rao, S. V. S.; Pathak, A. P.; Krishna Podagatlapalli, G.; Mounika, R.; Venugopal Rao, S. E-mail: soma-venu@uohyd.ac.in

    2015-12-15

    We report results from our studies on the fabrication and characterization of silicon (Si) nanoparticles (NPs) and nanostructures (NSs) achieved through the ablation of Si target in four different liquids using ∼2 picosecond (ps) pulses. The consequence of using different liquid media on the ablation of Si target was investigated by studying the surface morphology along with material composition of Si based NPs. The recorded mean sizes of these NPs were ∼9.5 nm, ∼37 nm, ∼45 nm and ∼42 nm obtained in acetone, water, dichloromethane (DCM) and chloroform, respectively. The generated NPs were characterized by selected area electron diffraction (SAED), high resolution transmission microscopy (HRTEM), Raman spectroscopic techniques and Photoluminescence (PL) studies. SAED, HRTEM and Raman spectroscopy data confirmed that the material composition was Si NPs in acetone, Si/SiO{sub 2} NPs in water, Si-C NPs in DCM and Si-C NPs in chloroform and all of them were confirmed to be polycrystalline in nature. Surface morphological information of the fabricated Si substrates was obtained using the field emission scanning electron microscopic (FESEM) technique. FESEM data revealed the formation of laser induced periodic surface structures (LIPSS) for the case of ablation in acetone and water while random NSs were observed for the case of ablation in DCM and chloroform. Femtosecond (fs) nonlinear optical properties and excited state dynamics of these colloidal Si NPs were investigated using the Z-scan and pump-probe techniques with ∼150 fs (100 MHz) and ∼70 fs (1 kHz) laser pulses, respectively. The fs pump-probe data obtained at 600 nm consisted of single and double exponential decays which were tentatively assigned to electron-electron collisional relaxation (<1 ps) and non-radiative transitions (>1 ps). Large third order optical nonlinearities (∼10{sup −14} e.s.u.) for these colloids have been estimated from Z-scan data at an excitation wavelength of 680 nm

  17. Prostate cancer transrectal HIFU ablation: detection of local recurrences using T2-weighted and dynamic contrast-enhanced MRI.

    PubMed

    Rouvière, Olivier; Girouin, Nicolas; Glas, Ludivine; Ben Cheikh, Alexandre; Gelet, Albert; Mège-Lechevallier, Florence; Rabilloud, Muriel; Chapelon, Jean-Yves; Lyonnet, Denis

    2010-01-01

    The objective was to evaluate T2-weighted (T2w) and dynamic contrast-enhanced (DCE) MRI in detecting local cancer recurrences after prostate high-intensity focused ultrasound (HIFU) ablation. Fifty-nine patients with biochemical recurrence after prostate HIFU ablation underwent T2-weighted and DCE MRI before transrectal biopsy. For each patient, biopsies were performed by two operators: operator 1 (blinded to MR results) performed random and colour Doppler-guided biopsies ("routine biopsies"); operator 2 obtained up to three cores per suspicious lesion on MRI ("targeted biopsies"). Seventy-seven suspicious lesions were detected on DCE images (n = 52), T2w images (n = 2) or both (n = 23). Forty patients and 41 MR lesions were positive at biopsy. Of the 36 remaining MR lesions, 20 contained viable benign glands. Targeted biopsy detected more cancers than routine biopsy (36 versus 27 patients, p = 0.0523). The mean percentages of positive cores per patient and of tumour invasion of the cores were significantly higher for targeted biopsies (p < 0.0001). The odds ratios of the probability of finding viable cancer and viable prostate tissue (benign or malignant) at targeted versus routine biopsy were respectively 3.35 (95% CI 3.05-3.64) and 1.38 (95% CI 1.13-1.63). MRI combining T2-weighted and DCE images is a promising method for guiding post-HIFU biopsy towards areas containing recurrent cancer and viable prostate tissue.

  18. Laser-ablation-plume thermalization dynamics in background gases studied by time-resolved imaging, spectroscopic, and ion probe diagnostics

    NASA Astrophysics Data System (ADS)

    Geohegan, David B.; Puretzky, Alexander A.

    1995-04-01

    A combination of fast plasma diagnostics are utilized to probe the propagation of laser ablation plumes in vacuum and low-pressure background gases in order to understand key gas dynamic processes relevant to film growth by pulsed laser deposition. During expansion into low-pressure background gases, the ion flux in the plasma plume splits into fast and slow components over a limited range of distances and times. This general effect is presented here for the case of yttrium ablation into argon, a single-element target into an inert gas. Time- resolved optical absorption spectroscopy and optical emission spectroscopy are employed to simultaneously view the populations of both excited and ground states of Y and Y+ for comparison with intensified-CCD photography of the visible plume luminescence and ion flux measurements made with fast ion probes during this phenomenon. These measurements indicate that plume-splitting in background gases is consistent with momentum transfer from an initial, vacuum velocity distribution into a second, slowed velocity distribution initiated by scattering collisions between plume and background gas atoms. The fast distribution is exponentially attenuated in accordance with Beer's law, and the second, slowed distribution coalesces into a stable, propagating shock structure.

  19. Modeling Fractal Dynamics

    NASA Astrophysics Data System (ADS)

    West, Bruce J.

    The proper methodology for describing the dynamics of certain complex phenomena and fractal time series is the fractional calculus through the fractional Langevin equation discussed herein and applied in a biomedical context. We show that a fractional operator (derivative or integral) acting on a fractal function, yields another fractal function, allowing us to construct a fractional Langevin equation to describe the evolution of a fractal statistical process, for example, human gait and cerebral blood flow. The goal of this talk is to make clear how certain complex phenomena, such as those that are abundantly present in human physiology, can be faithfully described using dynamical models involving fractional differential stochastic equations. These models are tested against existing data sets and shown to describe time series from complex physiologic phenomena quite well.

  20. Mesoscale ocean dynamics modeling

    SciTech Connect

    mHolm, D.; Alber, M.; Bayly, B.; Camassa, R.; Choi, W.; Cockburn, B.; Jones, D.; Lifschitz, A.; Margolin, L.; Marsden, L.; Nadiga, B.; Poje, A.; Smolarkiewicz, P.; Levermore, D.

    1996-05-01

    This is the final report of a three-year, Laboratory-Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). The ocean is a very complex nonlinear system that exhibits turbulence on essentially all scales, multiple equilibria, and significant intrinsic variability. Modeling the ocean`s dynamics at mesoscales is of fundamental importance for long-time-scale climate predictions. A major goal of this project has been to coordinate, strengthen, and focus the efforts of applied mathematicians, computer scientists, computational physicists and engineers (at LANL and a consortium of Universities) in a joint effort addressing the issues in mesoscale ocean dynamics. The project combines expertise in the core competencies of high performance computing and theory of complex systems in a new way that has great potential for improving ocean models now running on the Connection Machines CM-200 and CM-5 and on the Cray T3D.

  1. Macrophages loaded with gold nanoshells for photothermal ablation of glioma: An in vitro model

    NASA Astrophysics Data System (ADS)

    Makkouk, Amani Riad

    The current median survival of patients with glioblastoma multiforme (GBM), the most common type of glioma, remains at 14.6 months despite multimodal treatments (surgery, radiotherapy and chemotherapy). This research aims to study the feasibility of photothermal ablation of glioma using gold nanoshells that are heated upon laser irradiation at their resonance wavelength. The novelty of our approach lies in improving nanoshell tumor delivery by loading them in macrophages, which are known to be recruited to gliomas via tumor-released chemoattractive agents. Ferumoxides, superparamagnetic iron oxide (SPIO) nanoparticles, are needed as an additional macrophage load in order to visualize macrophage accumulation in the tumor with magnetic resonance imaging (MRI) prior to laser irradiation. The feasibility of this approach was studied in an in vitro model of glioma spheroids with the use of continuous wave (CW) laser light for ablation. The optimal loading of both murine and rat macrophages with Ferumoxides was determined using inductively coupled plasma atomic emission spectroscopy (ICP-AES). Higher concentrations of SPIO were observed in rat macrophages, and the optimal concentration was chosen at 100 microg Fe/ml. Macrophages were found to be very sensitive to near infra-red (NIR) laser irradiation, and their use as vehicles was thus not expected to hinder the function of loaded nanoshells as tumor-ablating tools. The intracellular presence of gold nanoshells in macrophages was confirmed with TEM imaging. Next, the loading of both murine and rat macrophages with gold nanoshells was studied using UV/Vis spectrophotometry, where higher nanoshell uptake was found in rat macrophages. Incubation of loaded murine and rat macrophages with rat C-6 and human ACBT spheroids, respectively, resulted in their infiltration of the spheroids. Subsequent laser irradiation at 55 W/cm2 for 10 min and follow-up of spheroid average diameter size over 14 days post-irradiation showed that

  2. Mathematical models based on transfer functions to estimate tissue temperature during RF cardiac ablation in real time.

    PubMed

    Alba-Martínez, Jose; Trujillo, Macarena; Blasco-Gimenez, Ramon; Berjano, Enrique

    2012-01-01

    Radiofrequency cardiac ablation (RFCA) has been used to treat certain types of cardiac arrhythmias by producing a thermal lesion. Even though a tissue temperature higher than 50ºC is required to destroy the target, thermal mapping is not currently used during RFCA. Our aim was thus to develop mathematical models capable of estimating tissue temperature from tissue characteristics acquired or estimated at the beginning of the procedure (electrical conductivity, thermal conductivity, specific heat and density) and the applied voltage at any time. Biological tissue was considered as a system with an input (applied voltage) and output (tissue temperature), and so the mathematical models were based on transfer functions relating these variables. We used theoretical models based on finite element method to verify the mathematical models. Firstly, we solved finite element models to identify the transfer functions between the temperature at a depth of 4 mm and a constant applied voltage using a 7Fr and 4 mm electrode. The results showed that the relationships can be expressed as first-order transfer functions. Changes in electrical conductivity only affected the static gain of the system, while specific heat variations produced a change in the dynamic system response. In contrast, variations in thermal conductivity modified both the static gain and the dynamic system response. Finally, to assess the performance of the transfer functions obtained, we conducted a new set of computer simulations using a controlled temperature protocol and considering the temperature dependence of the thermal and electrical conductivities, i.e. conditions closer to those found in clinical use. The results showed that the difference between the values estimated from transfer functions and the temperatures obtained from finite element models was less than 4ºC, which suggests that the proposed method could be used to estimate tissue temperature in real time.

  3. Dynamics of laser ablative shock waves from one dimensional periodic structured surfaces

    NASA Astrophysics Data System (ADS)

    Chelikani, Leela; Pinnoju, Venkateshwarlu; Paturi, Prem Kiran

    2017-01-01

    Laser ablative shock waves (LASWs) from one dimensional periodic structured surfaces (1D-PSS) on Aluminum metal is studied using time resolved shadowgraphy technique. 1D-PSS of triangular and sinusoidal periodic density profiles consisting of 288 lines per laser focal spot diameter (lp2ω0) with periodicity of 0.83 μm are used as targets. The SW properties such as propagation distance, velocity and pressure behind the shock front were compared with flat Aluminum surface of the target under the same experimental conditions. The possibility of tailoring the nature of LASWs with varying density profile on the surface is presented.

  4. Ablation of brain by erbium laser: study of dynamic behavior and tissue damage

    NASA Astrophysics Data System (ADS)

    Cubeddu, Rinaldo; Sozzi, C.; Taroni, Paola; Valentini, Gianluca; Bottiroli, Giovanni F.; Croce, Anna C.

    1994-02-01

    In this work two aspects of the ablation of brain by Erbium laser have been mainly addressed: the time evolution of the phenomenon and the damages, both thermal and mechanical, produced in the tissues. The time resolved images acquired during the laser interaction revealed that deep lacerations develop in the tissue due to a mechanical stress. The damages have been evaluated by studying the changes in the autofluorescence emission properties and the reduction in enzymatic activities (NADH Oxidase and ATPase). The results obtained in this study indicate that the thermal alterations resulting from the exposure to Erbium laser are limited, whereas the mechanical damages can be very pronounced.

  5. The Coupled Chemical and Physical Dynamics Model of MALDI

    NASA Astrophysics Data System (ADS)

    Knochenmuss, Richard

    2016-06-01

    The coupled physical and chemical dynamics model of ultraviolet matrix-assisted laser desorption/ionization (MALDI) has reproduced and explained a wide variety of MALDI phenomena. The rationale behind and elements of the model are reviewed, including the photophysics, kinetics, and thermodynamics of primary and secondary reaction steps. Experimental results are compared with model predictions to illustrate the foundations of the model, coupling of ablation and ionization, differences between and commonalities of matrices, secondary charge transfer reactions, ionization in both polarities, fluence and concentration dependencies, and suppression and enhancement effects.

  6. Contact dynamics math model

    NASA Technical Reports Server (NTRS)

    Glaese, John R.; Tobbe, Patrick A.

    1986-01-01

    The Space Station Mechanism Test Bed consists of a hydraulically driven, computer controlled six degree of freedom (DOF) motion system with which docking, berthing, and other mechanisms can be evaluated. Measured contact forces and moments are provided to the simulation host computer to enable representation of orbital contact dynamics. This report describes the development of a generalized math model which represents the relative motion between two rigid orbiting vehicles. The model allows motion in six DOF for each body, with no vehicle size limitation. The rotational and translational equations of motion are derived. The method used to transform the forces and moments from the sensor location to the vehicles' centers of mass is also explained. Two math models of docking mechanisms, a simple translational spring and the Remote Manipulator System end effector, are presented along with simulation results. The translational spring model is used in an attempt to verify the simulation with compensated hardware in the loop results.

  7. Photomechanical model of tooth enamel ablation by Er-laser radiation

    NASA Astrophysics Data System (ADS)

    Belikov, A. V.; Shatilova, K. V.; Skrypnik, A. V.; Vostryakov, R. G.; Maykapar, N. O.

    2012-03-01

    The photomechanical model of ablation of human tooth enamel is described in this work. It takes into account the structural peculiarities of enamel: free water in the enamel pores or cracks. We consider the photomechanical destruction of the enamel rods of hydroxyapatite by the pressure of water contained in the enamel pores and heated by laser radiation. This model takes into account attenuation by the Lambert-Beer law when radiation passes through the tissue and the fact that the tissue removal occurs when a unit volume of water was heated to the critical temperature. Decreasing logarithmic dependence of the enamel removal efficiency on the energy density was obtained as a result of the calculations. The shape of this function follows the shape of the experimental curve.

  8. Charge-to-Mass Dispersion Methods in Knockout-Ablation Fragmentation Models

    NASA Astrophysics Data System (ADS)

    Townsend, Lawrence; Burton, Krista; de Wet, Wouter

    2014-09-01

    Breakup of high-energy heavy ions in nuclear collisions is an important process in space radiation transport, shielding and risk assessment since the secondary particles produced by these collisions have ranges greater than their parent nucleus, and are damaging to humans and spacecraft components. This work uses a quantum-mechanical optical potential knockout-ablation model to estimate these collision cross sections in order to investigate differences in isotope and element production cross sections as a result of utilizing two different models of charge-to mass ratios for the projectile prefragments produced by the abrasion/knockout process. One model commonly used, a hypergeometric model, assumes that the distribution of abraded nucleons is completely uncorrelated. However, it permits some unrealistic distributions, such as removing all neutrons in the knockout stage, while leaving all protons intact. Another model, developed for use with a classical geometric, clean-cut abrasion model, is based upon the zero point vibrations of the giant dipole resonance of the fragmenting nucleus. In this work we compare fragment production cross section predictions using the two charge dispersion models with published experimental data. Breakup of high-energy heavy ions in nuclear collisions is an important process in space radiation transport, shielding and risk assessment since the secondary particles produced by these collisions have ranges greater than their parent nucleus, and are damaging to humans and spacecraft components. This work uses a quantum-mechanical optical potential knockout-ablation model to estimate these collision cross sections in order to investigate differences in isotope and element production cross sections as a result of utilizing two different models of charge-to mass ratios for the projectile prefragments produced by the abrasion/knockout process. One model commonly used, a hypergeometric model, assumes that the distribution of abraded nucleons is

  9. The internal structure and dynamics of the railgun plasma armature between infinitely wide ablating rails

    NASA Astrophysics Data System (ADS)

    Frese, M. H.

    Conventional guns cannot achieve projectile velocities much greater than the sound speed in burned chemical propellants. Plasma armature railguns should not be subject to the same type of velocity limit. However, experiments indicate that there may be some other mechanism which can limit the velocity. A theory that accurately predicts the observed velocity limit could provide the insight necessary to raise or even lift that limit. As yet, there is no theoretical explanation drawn from physical first principles which predicts a limit to the achievable velocity. This report describes the first phase of an effort to use two-dimensional dynamic magnetohydrodynamic (MHD) simulation of the plasma motion in the bore to produce such an explanation. In this phase, MACH2, an Air Force two-dimensional MHD code has been quickly adapted to this problem. The principal goal of this effort was to demonstrate the feasibility and desirability of using MACH2 for railgun armature simulation. However, the simulations of plasma armatures described here are the most sophisticated models of the railgun arc presently available; they show the armature as a dynamic and developing plasma in a way never before seen. The goal could not have been more clearly achieved.

  10. Gamma Reaction History ablator areal density constraints upon correlated diagnostic modeling of National Ignition Facility implosion experiments

    SciTech Connect

    Cerjan, C. Sayre, D. B.; Landen, O. L.; Church, J. A.; Stoeffl, W.; Grafil, E. M.; Herrmann, H. W.; Hoffman, N. M.; Kim, Y.

    2015-03-15

    The inelastic neutron scattering induced γ-ray signal from {sup 12}C in an Inertial Confinement Fusion capsule is demonstrated to be an effective and general diagnostic for shell ablator areal density. Experimental acquisition of the time-integrated signal at 4.4 MeV using threshold detection from four gas Čerenkov cells provides a direct measurement of the {sup 12}C areal density near stagnation. Application of a three-dimensional isobaric static model of data acquired in a recent high neutron yield National Ignition Facility experimental campaign reveals two general trends: smaller remaining ablator mass at stagnation and higher shell density with increasing laser drive.

  11. Boundary conditions at the ablative walls in two-temperature modelling of thermal plasmas with reactive working gas

    NASA Astrophysics Data System (ADS)

    Pekker, Leonid; Murphy, Anthony B.

    2016-09-01

    In this paper, we propose a new set of boundary conditions at ablative hot walls with thermionic electron emission for two-temperature thermal arc models in which the temperature of electrons can deviate from the temperature of heavy particles,~{{T}\\text{e}}\

  12. A finite-element model of a microwave catheter for cardiac ablation

    SciTech Connect

    Kaouk, Z.; Khebir, A.; Savard, P.

    1996-10-01

    To investigate the delivery of microwave energy by a catheter located inside the heart for the purpose of ablating small abnormal regions producing cardiac arrhythmias, a numerical model was developed. This model is based on the finite element method and can solve both the electromagnetic field and the temperature distribution resulting from the radiated power for axisymmetrical geometries. The antenna, which is fed by a coaxial cable with a 2.4 mm diameter, is constituted by a monopole which is terminated by a metallic cylindrical cap. The heart model can be either homogeneous or constituted of coaxial cylindrical shells with different electrical and thermal conductivities representing the intracavitary blood masses, the heart, and the torso. Experimental measurements obtained in an homogeneous tissue equivalent medium, such as the reflection coefficient of the antenna at different frequencies and for different monopole lengths, the radial and axial steady-state temperature profiles, and the time course of the temperature rise, were all in close agreement with the values computed with the model. Accurate modeling is a useful prerequisite for the design of antennas, and these results confirm the validity of the catheter-heart model for the investigation and the development of microwave catheters.

  13. Gas dynamics modeling of the HYLIFE-II reactor

    SciTech Connect

    Jantzen, C.

    1995-08-01

    Gas dynamics in the IFE reactor, HYLIFE-II is modeled using the code, TSUNAMI. This code is a 2-D shock-solver that uses the Godunov method with operator splitting. Results from a cylindrically symmetric simulation indicate an initial, low density, burst of high energy particles enters the final focus transport lens within 40 microseconds after the blast, much faster than the proposed 1 millisecond shutter closing time. After approximately 100 microseconds the chamber debris flux levels off to one eighth its peak value and maintains this intensity until the shutter closes. Although initial protective jet ablation is considered, neither secondary radiation nor condensation are modeled. Therefore results are conservative.

  14. Catheter ablation.

    PubMed

    Fromer, M; Shenasa, M

    1991-02-01

    Catheter ablation is gaining increasing interest for the therapy of symptomatic, sustained arrhythmias of various origins. The scope of this review is to give an overview of the biophysical aspects and major characteristics of some of the most widely used energy sources in catheter ablation, e.g., the discharge of conventional defibrillators, modified defibrillators, laser light, and radiofrequency current application. Results from animal studies are considered to explain the basic mechanisms of catheter ablation. The recent achievements with the use of radiofrequency current to modify or ablate cardiac conduction properties are outlined in more detail.

  15. Modelling of Indirect Laser-induced Thin-film Ablation of Epoxy for Local Exposing of Carbon Fibers

    NASA Astrophysics Data System (ADS)

    Emonts, Michael; Fischer, Kai; Schmitt, Stefan; Schares, Richard Ludwig

    Laser radiation is used as enabling technology for intrinsic joining of high-strength CFRP laminates and fiber-reinforced thermoplastic injection moulding compounds by exposure of surface-near carbon fibers. Short-pulsed NIR laser sources represent an acceptable compromise with respect to ablation performance, remote process capability by use of compact 3D scanner and the capability for closed-loop process control. However, using such a laser source means also minimizing heat-affected zones (HAZ). Based on literature research about laser ablation of thin metal films, heat flow at CFRP and thermo-mechanical behavior in FRP by pyrolysis, an analytical model was generated for thin-film ablation of cured epoxy resins at the surface of CFRP laminates by lift-off of resin chips. A comparison between simulation and experimental results confirms the capability of the model to predict the exposure area and the HAZ with deviations below 15%. Threshold fluences for the HAZ (>1 J/cm2) and the resin ablation (>3 J/cm2) have been confirmed.

  16. Distributed modeling of ablation (1996–2011) and climate sensitivity on the glaciers of Taylor Valley, Antarctica

    SciTech Connect

    Hoffman, Matthew J.; Fountain, Andrew G.; Liston, Glen E.

    2016-02-24

    Here, the McMurdo Dry Valleys of Antarctica host the coldest and driest ecosystem on Earth, which is acutely sensitive to the availability of water coming from glacial runoff. We modeled the spatial variability in ablation and assessed climate sensitivity of the glacier ablation zones using 16 years of meteorological and surface mass-balance observations collected in Taylor Valley. Sublimation was the primary form of mass loss over much of the ablation zones, except for near the termini where melt, primarily below the surface, dominated. Microclimates in ~10 m scale topographic basins generated melt rates up to ten times higher than over smooth glacier surfaces. In contrast, the vertical terminal cliffs on the glaciers can have higher or lower melt rates than the horizontal surfaces due to differences in incoming solar radiation. The model systematically underpredicted ablation for the final 5 years studied, possibly due to an increase of windblown sediment. Surface mass-balance sensitivity to temperature was ~–0.02 m w.e. K–1, which is among the smallest magnitudes observed globally. We also identified a high sensitivity to ice albedo, with a decrease of 0.02 having similar effects as a 1 K increase in temperature, and a complex sensitivity to wind speed.

  17. Distributed modeling of ablation (1996–2011) and climate sensitivity on the glaciers of Taylor Valley, Antarctica

    DOE PAGES

    Hoffman, Matthew J.; Fountain, Andrew G.; Liston, Glen E.

    2016-02-24

    Here, the McMurdo Dry Valleys of Antarctica host the coldest and driest ecosystem on Earth, which is acutely sensitive to the availability of water coming from glacial runoff. We modeled the spatial variability in ablation and assessed climate sensitivity of the glacier ablation zones using 16 years of meteorological and surface mass-balance observations collected in Taylor Valley. Sublimation was the primary form of mass loss over much of the ablation zones, except for near the termini where melt, primarily below the surface, dominated. Microclimates in ~10 m scale topographic basins generated melt rates up to ten times higher than overmore » smooth glacier surfaces. In contrast, the vertical terminal cliffs on the glaciers can have higher or lower melt rates than the horizontal surfaces due to differences in incoming solar radiation. The model systematically underpredicted ablation for the final 5 years studied, possibly due to an increase of windblown sediment. Surface mass-balance sensitivity to temperature was ~–0.02 m w.e. K–1, which is among the smallest magnitudes observed globally. We also identified a high sensitivity to ice albedo, with a decrease of 0.02 having similar effects as a 1 K increase in temperature, and a complex sensitivity to wind speed.« less

  18. The distribution of heat in bone during radiofrequency ablation of an ex vivo bovine model of osteoid osteoma.

    PubMed

    Greenberg, A; Berenstein Weyel, T; Sosna, J; Applbaum, J; Peyser, A

    2014-05-01

    Osteoid osteoma is treated primarily by radiofrequency (RF) ablation. However, there is little information about the distribution of heat in bone during the procedure and its safety. We constructed a model of osteoid osteoma to assess the distribution of heat in bone and to define the margins of safety for ablation. Cavities were drilled in cadaver bovine bones and filled with a liver homogenate to simulate the tumour matrix. Temperature-sensing probes were placed in the bone in a radial fashion away from the cavities. RF ablation was performed 107 times in tumours < 10 mm in diameter (72 of which were in cortical bone, 35 in cancellous bone), and 41 times in cortical bone with models > 10 mm in diameter. Significantly higher temperatures were found in cancellous bone than in cortical bone (p < 0.05). For lesions up to 10 mm in diameter, in both bone types, the temperature varied directly with the size of the tumour (p < 0.05), and inversely with the distance from it. Tumours of > 10 mm in diameter showed a trend similar to those of smaller lesions. No temperature rise was seen beyond 12 mm from the edge of a cortical tumour of any size. Formulae were developed to predict the expected temperature in the bone during ablation.

  19. Selective ablation of Xe from silicon surfaces: molecular dynamics simulations and experimental laser patterning.

    PubMed

    Stein, Ori; Lin, Zhibin; Zhigilei, Leonid V; Asscher, Micha

    2011-06-16

    The mechanism of laser-induced removal of Xe overlayers from a Si substrate has been investigated employing MD simulations and evaluated by buffer layer assisted laser patterning experiments. Two distinct regimes of overlayer removal are identified in the simulations of a uniform heating of the Si substrate by a 5 ns laser pulse: The intensive evaporation from the surface of the Xe overlayer and the detachment of the entire Xe overlayer driven by explosive boiling in the vicinity of the hot substrate. Simulations of selective heating of only a fraction of the silicon substrate suggest that the lateral heat transfer and bonding to the unheated, colder regions of the Xe overlayer is very efficient and suppresses the separation of a fraction of the overlayer from the substrate. Interaction with surrounding cold Xe is responsible for significant increase in the substrate temperature required for achieving the spatially selective ablation of the overlayer. The predictions of the MD simulations are found to be in a qualitative agreement with the results of experimental measurements of the threshold laser power required for the removal of Xe overlayers of different thickness and the shapes of metallic stripes generated by buffer-assisted laser patterning.

  20. Dynamics of laser ablation at the early stage during and after ultrashort pulse

    NASA Astrophysics Data System (ADS)

    Ilnitsky, D. K.; Khokhlov, V. A.; Zhakhovsky, V. V.; Petrov, Yu V.; Migdal, K. P.; Inogamov, N. A.

    2016-11-01

    Study of material flow in two-temperature states is needed for a fundamental understanding the physics of femtosecond laser ablation. To explore phenomena at a very early stage of laser action on a metallic target our in-house two-temperature hydrodynamics code is used here. The early stage covers duration of laser pulse with next first few picoseconds. We draw attention to the difference in behavior at this stage between the cases: (i) of an ultrathin film (thickness of order of skin depth d skin or less), (ii) thin films (thickness of a film is 4-7 of d skin for gold), and (iii) bulk targets (more than 10d skin for gold). We demonstrate that these differences follow from a competition among conductive cooling of laser excited electrons in a skin layer, electron-ion coupling, and hydrodynamics of unloading caused by excess of pressure of excited free electrons. Conductive cooling of the skin needs a heat sink, which is performed by the cold material outside the skin. Such sink is unavailable in the ultrathin films.

  1. Percutaneous Irreversible Electroporation Lung Ablation: Preliminary Results in a Porcine Model

    SciTech Connect

    Deodhar, Ajita; Monette, Sebastien; Single, Gordon W.; Hamilton, William C.; Thornton, Raymond H.; Sofocleous, Constantinos T.; Maybody, Majid; Solomon, Stephen B.

    2011-12-15

    Objective: Irreversible electroporation (IRE) uses direct electrical pulses to create permanent 'pores' in cell membranes to cause cell death. In contrast to conventional modalities, IRE has a nonthermal mechanism of action. Our objective was to study the histopathological and imaging features of IRE in normal swine lung. Materials and Methods: Eleven female swine were studied for hyperacute (8 h), acute (24 h), subacute (96 h), and chronic (3 week) effects of IRE ablation in lung. Paired unipolar IRE applicators were placed under computed tomography (CT) guidance. Some applicators were deliberately positioned near bronchovascular structures. IRE pulse delivery was synchronized with the cardiac rhythm only when ablation was performed within 2 cm of the heart. Contrast-enhanced CT scan was performed immediately before and after IRE and at 1 and 3 weeks after IRE ablation. Representative tissue was stained with hematoxylin and eosin for histopathology. Results: Twenty-five ablations were created: ten hyperacute, four acute, and three subacute ablations showed alveolar edema and necrosis with necrosis of bronchial, bronchiolar, and vascular epithelium. Bronchovascular architecture was maintained. Chronic ablations showed bronchiolitis obliterans and alveolar interstitial fibrosis. Immediate post-procedure CT images showed linear or patchy density along the applicator tract. At 1 week, there was consolidation that resolved partially or completely by 3 weeks. Pneumothorax requiring chest tube developed in two animals; no significant cardiac arrhythmias were noted. Conclusion: Our preliminary porcine study demonstrates the nonthermal and extracellular matrix sparing mechanism of action of IRE. IRE is a potential alternative to thermal ablative modalities.

  2. Expanded modeling of temperature-dependent dielectric properties for microwave thermal ablation.

    PubMed

    Ji, Zhen; Brace, Christopher L

    2011-08-21

    Microwaves are a promising source for thermal tumor ablation due to their ability to rapidly heat dispersive biological tissues, often to temperatures in excess of 100 °C. At these high temperatures, tissue dielectric properties change rapidly and, thus, so do the characteristics of energy delivery. Precise knowledge of how tissue dielectric properties change during microwave heating promises to facilitate more accurate simulation of device performance and helps optimize device geometry and energy delivery parameters. In this study, we measured the dielectric properties of liver tissue during high-temperature microwave heating. The resulting data were compiled into either a sigmoidal function of temperature or an integration of the time-temperature curve for both relative permittivity and effective conductivity. Coupled electromagnetic-thermal simulations of heating produced by a single monopole antenna using the new models were then compared to simulations with existing linear and static models, and experimental temperatures in liver tissue. The new sigmoidal temperature-dependent model more accurately predicted experimental temperatures when compared to temperature-time integrated or existing models. The mean percent differences between simulated and experimental temperatures over all times were 4.2% for sigmoidal, 10.1% for temperature-time integration, 27.0% for linear and 32.8% for static models at the antenna input power of 50 W. Correcting for tissue contraction improved agreement for powers up to 75 W. The sigmoidal model also predicted substantial changes in heating pattern due to dehydration. We can conclude from these studies that a sigmoidal model of tissue dielectric properties improves prediction of experimental results. More work is needed to refine and generalize this model.

  3. Sequential activation of a segmented ground pad reduces skin heating during radiofrequency tumor ablation: optimization via computational models.

    PubMed

    Schutt, David J; Haemmerich, Dieter

    2008-07-01

    Radiofrequency (RF) ablation has become an accepted treatment modality for unresectable tumors. The need for larger ablation zones has resulted in increased RF generator power. Skin burns due to ground pad heating are increasingly limiting further increases in generator power, and thus, ablation zone size. We investigated a method for reducing ground pad heating in which a commercial ground pad is segmented into multiple ground electrodes, with sequential activation of ground electrode subsets. We created finite-element method computer models of a commercial ground pad (14 x 23 cm) and compared normal operation of a standard pad to sequential activation of a segmented pad (two to five separate ground electrode segments). A constant current of 1 A was applied for 12 min in all simulations. Time periods during sequential activation simulations were adjusted to keep the leading edge temperatures at each ground electrode equal. The maximum temperature using standard activation of the commercial pad was 41.7 degrees C. For sequential activation of a segmented pad, the maximum temperature ranged from 39.3 degrees C (five segments) to 40.9 degrees C (two segments). Sequential activation of a segmented ground pad resulted in lower tissue temperatures. This method may reduce the incidence of ground pad burns and enable the use of higher power generators during RF tumor ablation.

  4. Modeling of plasma distortions by laser-induced ablation spectroscopy (LIAS) and implications for the interpretation of LIAS measurements

    NASA Astrophysics Data System (ADS)

    Tokar, M. Z.; Gierse, N.; Philipps, V.; Samm, U.

    2015-09-01

    For the interpretation of the line radiation observed from laser induced ablation spectroscopy (LIAS) such parameters as the density and temperature of electrons within very compact clouds of atoms and singly charged ions of ablated material have to be known. Compared to the local plasma conditions prior to the laser pulse, these can be strongly changed during LIAS since new electrons are generated by the ionisation of particles ejected from the irradiated target. Because of their transience and spatial inhomogeneity it is technically difficult to measure disturbances induced in the plasma by LIAS. To overcome this uncertainty a numerical model has been elaborated, providing a self-consistent description for the spreading of ablated particles and accompanying modifications in the plasma. The results of calculations for LIAS performed on carbon-containing targets in Ohmic and additionally heated discharges in the tokamak TEXTOR are presented. Due to the increase in the electron density the ‘ionisation per photon’ ratio, S/XB factor, is significantly enhanced compared to unperturbed plasma conditions. The impact of the amount of material ablated and of the plasma conditions before LIAS on the level of the S/XB-enhancement is investigated.

  5. Real-time temperature estimation and monitoring of HIFU ablation through a combined modeling and passive acoustic mapping approach.

    PubMed

    Jensen, C R; Cleveland, R O; Coussios, C C

    2013-09-07

    Passive acoustic mapping (PAM) has been recently demonstrated as a method of monitoring focused ultrasound therapy by reconstructing the emissions created by inertially cavitating bubbles (Jensen et al 2012 Radiology 262 252-61). The published method sums energy emitted by cavitation from the focal region within the tissue and uses a threshold to determine when sufficient energy has been delivered for ablation. The present work builds on this approach to provide a high-intensity focused ultrasound (HIFU) treatment monitoring software that displays both real-time temperature maps and a prediction of the ablated tissue region. This is achieved by determining heat deposition from two sources: (i) acoustic absorption of the primary HIFU beam which is calculated via a nonlinear model, and (ii) absorption of energy from bubble acoustic emissions which is estimated from measurements. The two sources of heat are used as inputs to the bioheat equation that gives an estimate of the temperature of the tissue as well as estimates of tissue ablation. The method has been applied to ex vivo ox liver samples and the estimated temperature is compared to the measured temperature and shows good agreement, capturing the effect of cavitation-enhanced heating on temperature evolution. In conclusion, it is demonstrated that by using PAM and predictions of heating it is possible to produce an evolving estimate of cell death during exposure in order to guide treatment for monitoring ablative HIFU therapy.

  6. Unintended Thermal Injuries from Radiofrequency Ablation: Organ Protection with an Angioplasty Balloon Catheter in an Animal Model

    PubMed Central

    Knuttinen, Martha-Grace; Van Ha, Thuong G.; Reilly, Christopher; Montag, Anthony; Straus, Christopher

    2014-01-01

    Objectives: The aim of this study was to investigate a novel approach of using a balloon catheter as a protective device to separate liver from the diaphragm or nearby bowel during radiofrequency ablation (RFA) of hepatic dome tumors in an animal model. Materials and Methods: All experimental procedures were approved by animal Institutional Review Board. Using a 3 cm RF needle electrode, 70 hepatic ablation zones were created using ultrasound in 7 pigs. 50 lesions were created using balloon interposition between liver and diaphragm; 20 lesions were created using the balloon device interposed posteriorly between liver and bowel. Additional 21 control lesions were performed. Animals were sacrificed immediately; diaphragm and bowel were then visually inspected and sectioned. Diaphragmatic and bowel injury was then classified according to the depth of thickness. Results: Control lesions caused full thickness injury, either to diaphragm or bowel. During ablation of lesions with balloon interposition, there was significantly less diaphragmatic injury, P < 0.001 and less bowel injury, P < 0.01. Conclusion: Using balloon interposition as a protective device has advantages over previous saline infusion or CO2 insufflation, providing a safe way to expand percutaneous RFA of liver tumors located on the undersurface of the diaphragm. In addition, this method may be used in protection of other organs adjacent to areas being ablated. PMID:24678433

  7. Precision Optogenetic Tool for Selective Single- and Multiple-Cell Ablation in a Live Animal Model System.

    PubMed

    Makhijani, Kalpana; To, Tsz-Leung; Ruiz-González, Rubén; Lafaye, Céline; Royant, Antoine; Shu, Xiaokun

    2017-01-19

    Cell ablation is a strategy to study cell lineage and function during development. Optogenetic methods are an important cell-ablation approach, and we have previously developed a mini singlet oxygen generator (miniSOG) tool that works in the living Caenorhabditis elegans. Here, we use directed evolution to generate miniSOG2, an improved tool for cell ablation via photogenerated reactive oxygen species. We apply miniSOG2 to a far more complex model animal system, Drosophila melanogaster, and demonstrate that it can be used to kill a single neuron in a Drosophila larva. In addition, miniSOG2 is able to photoablate a small group of cells in one of the larval wing imaginal discs, resulting in an adult with one incomplete and one normal wing. We expect miniSOG2 to be a useful optogenetic tool for precision cell ablation at a desired developmental time point in live animals, thus opening a new window into cell origin, fate and function, tissue regeneration, and developmental biology.

  8. Sequential Activation of a Segmented Ground Pad Reduces Skin Heating During Radiofrequency Tumor Ablation: Optimization via Computational Models

    PubMed Central

    Schutt, David J.; Haemmerich, Dieter

    2009-01-01

    Radiofrequency (RF) ablation has become an accepted treatment modality for unresectable tumors. The need for larger ablation zones has resulted in increased RF generator power. Skin burns due to ground pad heating are increasingly limiting further increases in generator power, and thus, ablation zone size. We investigated a method for reducing ground pad heating in which a commercial ground pad is segmented into multiple ground electrodes, with sequential activation of ground electrode subsets. We created finite-element method computer models of a commercial ground pad (14 × 23 cm) and compared normal operation of a standard pad to sequential activation of a segmented pad (two to five separate ground electrode segments). A constant current of 1 A was applied for 12 min in all simulations. Time periods during sequential activation simulations were adjusted to keep the leading edge temperatures at each ground electrode equal. The maximum temperature using standard activation of the commercial pad was 41.7 °C. For sequential activation of a segmented pad, the maximum temperature ranged from 39.3 °C (five segments) to 40.9 °C (two segments). Sequential activation of a segmented ground pad resulted in lower tissue temperatures. This method may reduce the incidence of ground pad burns and enable the use of higher power generators during RF tumor ablation. PMID:18595807

  9. Radiosurgical Ablation of the Renal Nerve in a Porcine Model: A Minimally Invasive Therapeutic Approach to Treat Refractory Hypertension

    PubMed Central

    Long, Sarah A; Gardner, Edward A; Tay, Jonathan; Ladich, Elena; Chamberlain, David; Fogarty, Thomas J.; Maguire, Patrick J

    2017-01-01

    Background Hypertension is strongly associated with cardiovascular diseases such as heart failure, stroke, kidney disease, and has been correlated with an increased risk for heart attack. Current treatment regimens for hypertension are highly inadequate, with reports indicating that only 50.1% of the clinical population with the disease has their blood pressure under control. Objective To study the feasibility of using minimally invasive radiosurgery to ablate the renal nerves as a novel treatment for refractory hypertension, and to assess the safety and efficacy of such an approach. Methods A Hanford porcine (miniswine) model (N = 6) was used to investigate the feasibility of using the CyberHeart radiosurgical platform (CyberHeart Inc., Mountain View, CA, USA) to create safe renal nerve ablations. Norepinephrine (NE) levels were measured pre and post treatment. Additionally, renal nerve and arterial histology were studied to examine effect. Results Plasma norepinephrine levels showed a decrease over the six-month time point. Urea, nitrogen, and creatinine levels showed no changes post procedure. Histology documented no significant arterial injury in targeted areas. Renal nerves documented histologic change consistent with nerve ablation. Conclusion CyberHeart radiosurgery of the renal nerve is feasible and resulted in norepinephrine reduction and renal nerve injury consistent with radiosurgical targeted ablation. PMID:28367392

  10. Development of a Swine Benign Biliary Stricture Model Using Endoscopic Biliary Radiofrequency Ablation

    PubMed Central

    2016-01-01

    The large animal model with benign biliary stricture (BBS) is essential to undergo experiment on developing new devices and endoscopic treatment. This study conducted to establish a clinically relevant porcine BBS model by means of endobiliary radiofrequency ablation (RFA). Endoscopic retrograde cholangiography (ERC) was performed on 12 swine. The animals were allocated to three groups (60, 80, and 100 W) according to the electrical power level of RFA electrode. Endobiliary RFA was applied to the common bile duct for 60 seconds using an RFA catheter that was endoscopically inserted. ERC was repeated two and four weeks, respectively, after the RFA to identify BBS. After the strictures were identified, histologic evaluations were performed. On the follow-up ERC two weeks after the procedure, a segmental bile duct stricture was observed in all animals. On microscopic examination, severe periductal fibrosis and luminal obliteration with transmural inflammation were demonstrated. Bile duct perforations occurred in two pigs (100 W, n = 1; 80 W, n = 1) but there were no major complications in the 60 W group. The application of endobiliary RFA with 60 W electrical power resulted in a safe and reproducible swine model of BBS. PMID:27510388

  11. Brazilian Red Propolis Attenuates Hypertension and Renal Damage in 5/6 Renal Ablation Model

    PubMed Central

    Teles, Flávio; da Silva, Tarcilo Machado; da Cruz Júnior, Francisco Pessoa; Honorato, Vitor Hugo; de Oliveira Costa, Henrique; Barbosa, Ana Paula Fernandes; de Oliveira, Sabrina Gomes; Porfírio, Zenaldo; Libório, Alexandre Braga; Borges, Raquel Lerner; Fanelli, Camilla

    2015-01-01

    The pathogenic role of inflammation and oxidative stress in chronic kidney disease (CKD) is well known. Anti-inflammatories and antioxidant drugs has demonstrated significant renoprotection in experimental nephropathies. Moreover, the inclusion of natural antioxidants derived from food and herbal extracts (such as polyphenols, curcumin and lycopene) as an adjuvant therapy for slowing CKD progression has been largely tested. Brazilian propolis is a honeybee product, whose anti-inflammatory, antimicrobial and antioxidant effects have been widely shown in models of sepsis, cancer, skin irritation and liver fibrosis. Furthermore, previous studies demonstrated that this compound promotes vasodilation and reduces hypertension. However, potential renoprotective effects of propolis in CKD have never been investigated. The aim of this study was to evaluate the effects of a subtype of Brazilian propolis, the Red Propolis (RP), in the 5/6 renal ablation model (Nx). Adult male Wistar rats underwent Nx and were divided into untreated (Nx) and RP-treated (Nx+RP) groups, after 30 days of surgery; when rats already exhibited marked hypertension and proteinuria. Animals were observed for 90 days from the surgery day, when Nx+RP group showed significant reduction of hypertension, proteinuria, serum creatinine retention, glomerulosclerosis, renal macrophage infiltration and oxidative stress, compared to age-matched untreated Nx rats, which worsened progressively over time. In conclusion, RP treatment attenuated hypertension and structural renal damage in Nx model. Reduction of renal inflammation and oxidative stress could be a plausible mechanism to explain this renoprotection. PMID:25607548

  12. Brazilian red propolis attenuates hypertension and renal damage in 5/6 renal ablation model.

    PubMed

    Teles, Flávio; da Silva, Tarcilo Machado; da Cruz Júnior, Francisco Pessoa; Honorato, Vitor Hugo; de Oliveira Costa, Henrique; Barbosa, Ana Paula Fernandes; de Oliveira, Sabrina Gomes; Porfírio, Zenaldo; Libório, Alexandre Braga; Borges, Raquel Lerner; Fanelli, Camilla

    2015-01-01

    The pathogenic role of inflammation and oxidative stress in chronic kidney disease (CKD) is well known. Anti-inflammatories and antioxidant drugs has demonstrated significant renoprotection in experimental nephropathies. Moreover, the inclusion of natural antioxidants derived from food and herbal extracts (such as polyphenols, curcumin and lycopene) as an adjuvant therapy for slowing CKD progression has been largely tested. Brazilian propolis is a honeybee product, whose anti-inflammatory, antimicrobial and antioxidant effects have been widely shown in models of sepsis, cancer, skin irritation and liver fibrosis. Furthermore, previous studies demonstrated that this compound promotes vasodilation and reduces hypertension. However, potential renoprotective effects of propolis in CKD have never been investigated. The aim of this study was to evaluate the effects of a subtype of Brazilian propolis, the Red Propolis (RP), in the 5/6 renal ablation model (Nx). Adult male Wistar rats underwent Nx and were divided into untreated (Nx) and RP-treated (Nx+RP) groups, after 30 days of surgery; when rats already exhibited marked hypertension and proteinuria. Animals were observed for 90 days from the surgery day, when Nx+RP group showed significant reduction of hypertension, proteinuria, serum creatinine retention, glomerulosclerosis, renal macrophage infiltration and oxidative stress, compared to age-matched untreated Nx rats, which worsened progressively over time. In conclusion, RP treatment attenuated hypertension and structural renal damage in Nx model. Reduction of renal inflammation and oxidative stress could be a plausible mechanism to explain this renoprotection.

  13. Endometrial thermal balloon ablation using a high temperature, pulsed system: a mathematical model.

    PubMed

    Reinders, Daniel M; Baldwin, Susan A; Bert, Joel L

    2003-12-01

    A new endometrial thermal balloon ablation treatment for menorrhagia is modeled mathematically to predict its efficacy and safety. A device preheats a fluid to 173 degrees C within a reservoir external to the uterus, and then pulses this fluid without further heating between the reservoir and the balloon for 2.1 min of treatment time. The model predicted this treatment to result in consistent immediate tissue death (coagulation) depths of 3.4 +/- 0.1 mm for uterine cavities of 7 to 26 mL, and that eventual necrosis (tissue death that would occur 1-5 days post burn) may occur to depths of 6.5 +/- 0.2 mm. Whereas, burn depths varied with uterine cavity volume when a low temperature treatment (constant 75 degrees C for 15 min) was modeled (2.3-2.9 mm and 6.8-8.2 mm, for immediate tissue death and eventual necrosis respectively). Similarly, the high temperature, pulsed treatment was less sensitive to blood perfusion rate than the low temperature treatment. Predicted eventual necrosis depth was 1.5 mm less for the high temperature, pulsed treatment than that predicted for a low temperature treatment (constant 87 degrees C for 7 min) for the same immediate tissue death depth (3.5 mm), indicating that the new high temperature treatment may result in less damage to non targeted tissues.

  14. Dynamic absorption and scattering of water and hydrogel during high-repetition-rate (>100 MHz) burst-mode ultrafast-pulse laser ablation

    PubMed Central

    Qian, Zuoming; Covarrubias, Andrés; Grindal, Alexander W.; Akens, Margarete K.; Lilge, Lothar; Marjoribanks, Robin S.

    2016-01-01

    High-repetition-rate burst-mode ultrafast-laser ablation and disruption of biological tissues depends on interaction of each pulse with the sample, but under those particular conditions which persist from previous pulses. This work characterizes and compares the dynamics of absorption and scattering of a 133-MHz repetition-rate, burst-mode ultrafast-pulse laser, in agar hydrogel targets and distilled water. The differences in energy partition are quantified, pulse-by-pulse, using a time-resolving integrating-sphere-based device. These measurements reveal that high-repetition-rate burst-mode ultrafast-laser ablation is a highly dynamical process affected by the persistence of ionization, dissipation of plasma plume, neutral material flow, tissue tensile strength, and the hydrodynamic oscillation of cavitation bubbles. PMID:27375948

  15. Ultrashort-pulse laser ablation of nanocrystalline aluminum

    SciTech Connect

    Gill-Comeau, Maxime; Lewis, Laurent J.

    2011-12-01

    Molecular-dynamics simulations of the ablation of nanocrystalline Al films by ultrashort laser pulses in the low-fluence (no-ionization) regime (0-2.5 times the ablation threshold, F{sub th}) are reported. The simulations employ an embedded-atom method potential for the dynamics of the ions and a realistic two-temperature model for the electron gas (and its interactions with the ion gas), which confers different electronic properties to the monocrystalline solid, nanocrystalline solid, and liquid regions of the targets. The ablation dynamics in three nanocrystalline structures is studied: two dense targets with different crystallite sizes (d=3.1 and 6.2 nm on average) and a d=6.2 nm porous sample. The results are compared to the ablation of monocrystalline Al. Significant differences are observed, the nanocrystalline targets showing, in particular, a lower ablation threshold and a larger melting depth, and yielding pressure waves of higher amplitude than the monocrystalline targets. Furthermore, it is shown that nanocrystalline targets experience no residual stress associated with thermal expansion and lateral constraints, and that little crystal growth occurs in the solid during and after ablation. Laser-induced spallation of the back surface of the films is also investigated; we find, in particular, that the high-strain fracture resistance of nanocrystalline samples is significantly reduced in comparison to the crystalline material.

  16. Toward modeling of radio-frequency ablation lesions for image-guided left atrial fibrillation therapy: model formulation and preliminary evaluation.

    PubMed

    Linte, Cristian A; Camp, Jon J; Holmes, David R; Rettmann, Maryam E; Packer, Douglas L; Robb, Richard A

    2013-01-01

    In the context of image-guided left atrial fibrillation therapy, relatively very little work has been done to consider the changes that occur in the tissue during ablation in order to monitor therapy delivery. Here we describe a technique to predict the lesion progression and monitor the radio-frequency energy delivery via a thermal ablation model that uses heat transfer principles to estimate the tissue temperature distribution and resulting lesion. A preliminary evaluation of the model was conducted in ex vivo skeletal beef muscle tissue while emulating a clinically relevant tissue ablation protocol. The predicted temperature distribution within the tissue was assessed against that measured directly using fiberoptic temperature probes and showed agreement within 5°C between the model-predicted and experimentally measured tissue temperatures at prescribed locations. We believe this technique is capable of providing reasonably accurate representations of the tissue response to radio-frequency energy delivery.

  17. Ablation and Viscous Effects on the Force and Moment Characteristics of Slender Cone Models at Mach 10 under Laminar Flow Conditions

    DTIC Science & Technology

    1975-10-01

    comparison of transpirationally cooling a model as opposed to using a subliming low-temperature ablator ( camphor ) has not been made on an identical model... subliming low-temperature ablator (i.e., camphor ) reveals small but significant differences in the moment and drag characteristics for a 5-deg cone...6 2. 5-deg Sharp Cone Test Model . . . . . . . . . . . . . . . . . . . . . . . . . . . 7 3. Relative Axial Distribution of Camphor or

  18. Radiofrequency Ablation (RFA): Development of a Flow Model for Bovine Livers for Extensive Bench Testing

    SciTech Connect

    Lubienski, Andreas Bitsch, Rudi G.; Lubienski, Katrin; Kauffmann, Guenter; Duex, Markus

    2006-12-15

    Purpose. To develop a flow model for bovine livers for extensive bench testing of technical improvements or procedure-related developments of radiofrequency ablation excluding animal experiments. Methods. The perfusion of bovine livers directly from the slaughterhouse was simulated in a liver perfusion tank developed for the experimental work. The liver perfusion medium used was a Tyrode solution prepared in accordance with physiologic criteria (as for liver transplants) which was oxygenated by an oxygenator and heated to 36.5 deg. C. Portal vein circulation was regulated via a flow- and pressure-controlled pump and arterial circulation using a dialysis machine. Flow rate and pressure were adjusted as for the physiology of a human liver converted to bovine liver conditions. The fluid discharged from the liver was returned into the perfusion system through the vena cava. Extendable precision swivel arms with the radiofrequency probe attached were mounted on the liver perfusion tank. RFA was conducted with the RF3000 generator and a 2 cm LeVeen needle (Boston Scientific, Ratingen, Germany) in a three-dimensional grid for precise localization of the generated thermolesions. Results. Four bovine livers weighing 8.4 {+-} 0.4 kg each were prepared, connected to the perfusion system, and consecutively perfused for the experiments. Mean arterial flow was 569 {+-} 43 ml/min, arterial pressure 120 mmHg, portovenous flow 1440 {+-} 305 ml/min, and portal pressure 10 mmHg. Macroscopic evaluation after the experiments revealed no thrombi within the hepatic vessels. A total of 136 RF thermolesions were generated with an average number of 34 per liver. Mean RF duration was 2:59 {+-} 2:01 min:sec with an average baseline impedance of 28.2 {+-} 3.4 ohms. The mean diameter of the thermolesions along the puncture channel was 22.98 {+-} 4.34 mm and perpendicular to the channel was 23.27 {+-} 4.82 mm. Conclusion. Extracorporeal perfusion of bovine livers with consecutive standardized RF

  19. Ablator Response Model Development: From Flight Data Back to Fundamental Experiments

    NASA Technical Reports Server (NTRS)

    Mansour, Nagi N.; Lachaud, Jean R.

    2013-01-01

    The successful Mars atmospheric entry by the Mars Science Laboratory (MSL-Curiosity) combined with the success of the Earth atmospheric entry by the Stardust capsule have established PICA as a major Thermal Protection Systems (TPS) material. We expect that this class of materials will be on the short list selected by NASA for any atmospheric entry missions and that it will be the lead of that list of materials in any planning, feasibility studies or flight readiness studies. In addition to NASAs successes, the Dragon capsule, the successful commercial space vehicle built by SpaceX, uses PICA-X, while the European Space Agency is considering ASTERM for its exploration missions that involve atmospheric entries, both of these materials are of the same family as PICA. In the talk, a high-fidelity model will be detailed and discussed. The model tracks the chemical composition of the gases produced during pyrolysis. As in the conventional models, it uses equilibrium chemistry to determine the recession rate at high temperatures but switches to in-volume finite-rate ablation for lower temperatures. It also tracks the time evolution of the porosity of the material. Progress in implementing this high-fidelity model in a code will be presented. In addition, a set of basic experimental data being supported for model validation will be summarized. The validation process for the model development will be discussed. Preliminary results will be presented for a case where detailed pyrolysis product chemistry is computed. Finally, a wish list for a set of validation experiments will be outlined and discussed.

  20. Non-linear dual-phase-lag model for analyzing heat transfer phenomena in living tissues during thermal ablation.

    PubMed

    Kumar, P; Kumar, Dinesh; Rai, K N

    2016-08-01

    In this article, a non-linear dual-phase-lag (DPL) bio-heat transfer model based on temperature dependent metabolic heat generation rate is derived to analyze the heat transfer phenomena in living tissues during thermal ablation treatment. The numerical solution of the present non-linear problem has been done by finite element Runge-Kutta (4,5) method which combines the essence of Runge-Kutta (4,5) method together with finite difference scheme. Our study demonstrates that at the thermal ablation position temperature predicted by non-linear and linear DPL models show significant differences. A comparison has been made among non-linear DPL, thermal wave and Pennes model and it has been found that non-linear DPL and thermal wave bio-heat model show almost same nature whereas non-linear Pennes model shows significantly different temperature profile at the initial stage of thermal ablation treatment. The effect of Fourier number and Vernotte number (relaxation Fourier number) on temperature profile in presence and absence of externally applied heat source has been studied in detail and it has been observed that the presence of externally applied heat source term highly affects the efficiency of thermal treatment method.

  1. High-speed ablation of ultradeep channels by a phase-conjugate dynamically controlled passively Q-switched Nd:YAG laser

    SciTech Connect

    Basiev, T T; Garnov, S V; Klimentov, S M; Pivovarov, P A; Gavrilov, A V; Smetanin, S N; Solokhin, S A; Fedin, A V

    2007-10-31

    Parameters of high-speed ablation of ultradeep channels by controlled pulse trains from a single-mode phase-conjugate dynamic cavity Nd:YAG laser emitting 20-200-ns, 70-250-mJ pulses at a pulse repetition rate in a train of 40-250 kHz are studied. The optimal parameters of ablation are found, for which a long-lived region of a hot rarefied gas was maintained in the ultradeep channel, which suppressed the shielding action of the surface plasma. The control of the lasing process during ablation optimises not only the heating and plasma formation, but also the removal of the processed material in the pause between laser pulses. Adaptive regulation of lasing parameters during ablation made it possible to obtain ultradeep channels of length 8-27 mm and diameters 80-300 {mu}m of the input and output holes in metals (aluminium, steel and Inconel 718 nickel superalloy) and ultrahard ceramics (Al{sub 2}O{sub 3}, AlN, SiC). (special issue devoted to the 25th anniversary of the a.m. prokhorov general physics institute)

  2. Dynamics of spallation during femtosecond laser ablation studied by time-resolved reflectivity with double pump pulses

    SciTech Connect

    Kumada, Takayuki Otobe, Tomohito; Nishikino, Masaharu; Hasegawa, Noboru; Hayashi, Terutake

    2016-01-04

    The dynamics of photomechanical spallation during femtosecond laser ablation of fused silica was studied by time-resolved reflectivity with double pump pulses. Oscillation of reflectivity was caused by interference between the probe pulses reflected at the sample surface and the spallation layer, and was enhanced when the surface was irradiated with the second pump pulse within a time interval, Δτ, of several picoseconds after the first pump pulse. However, as Δτ was increased, the oscillation amplitude decreased with an exponential decay time of 10 ps. The oscillation disappeared when Δτ exceeded 20 ps. This result suggests that the formation time of the spallation layer is approximately 10 ps. A second pump pulse with Δτ shorter than 10 ps excites the bulk sample. The spallation layer that is photo-excited by the first and second pump pulses is separated afterward. In contrast, a pulse with Δτ longer than the formation time excites and breaks up the spallation layer that has already been separated from the bulk. The formation time of the spallation layer, as determined in this experiment, is attributed to the characteristic time of the mechanical equilibration corresponding to the thickness divided by the sound velocity of the photo-excited layer.

  3. Modeling of the shrinking process of a bubble induced by laser metal ablation in water and experimental verification

    NASA Astrophysics Data System (ADS)

    Dabir-Moghaddam, Navid; Liu, Ze; Wu, Benxin

    2017-01-01

    Laser ablation of a solid target immersed in liquid (such as water) has many important applications such as laser synthesis of nanoparticles, laser micromachining in water, and laser shock peening. Laser ablation of a solid target in water involves complicated physical processes. One important process often involved is the generation and evolution of a bubble in water and attached to the target surface, which may have significant effects on the target and the ambient water, and hence may greatly affect the relevant practical applications. Some experimental studies were reported in the literature on bubble evolutions induced by laser ablation of a solid target in water. However, the reported previous relevant physics-based modeling work is not sufficient. A physics-based model may help improve the process fundamental understanding and generate valuable information to related applications. In this paper, physics-based modeling work has been performed on the shrinking process of a bubble induced by laser metal ablation in water, together with time-resolved shadowgraph imaging experiments to verify the model. The model-predicted bubble evolution agrees reasonably well with the experimental measurement shown in the paper. Under the studied conditions, it has been found that near the bubble collapse moment (i.e., the moment when the bubble shrinks to a minimum size): (1) the bubble shrinks very fast, and the peak fluid velocity magnitude occurs inside the bubble and can exceed ˜550 m/s; (2) the temperature inside the bubble increases very quickly and approaches ˜2000 K; and (3) the pressure inside the bubble becomes very high, and can reach a peak magnitude of ˜380 MPa at the collapse moment at the bubble center. During the shrinking process, a high-pressure region outside and near the bubble wall is generated near the collapse moment, but the temperature of the region outside the bubble mostly remains low.

  4. Ultrasound simulation of real-time temperature estimation during radiofrequency ablation using finite element models.

    PubMed

    Daniels, M J; Jiang, J; Varghese, T

    2008-03-01

    Radiofrequency ablation is the most common minimally invasive therapy used in the United States to treat hepatocellular carcinoma and liver metastases. The ability to perform real-time temperature imaging while a patient is undergoing ablation therapy may help reduce the high recurrence rates following ablation therapy. Ultrasound echo signals undergo time shifts with increasing temperature due to sound speed and thermal expansion, which are tracked using both 1D cross correlation and 2D block matching based speckle tracking methods. In this paper, we present a quantitative evaluation of the accuracy and precision of temperature estimation using the above algorithms on both simulated and experimental data. A finite element analysis simulation of radiofrequency ablation of hepatic tissue was developed. Finite element analysis provides a method to obtain the exact temperature distribution along with a mapping of the tissue displacement due to thermal expansion. These local displacement maps were combined with the displacement due to speed of sound changes and utilized to generate ultrasound radiofrequency frames at specified time increments over the entire ablation procedure. These echo signals provide an ideal test-bed to evaluate the performance of both speckle tracking methods, since the estimated temperature results can be compared directly to the exact finite element solution. Our results indicate that the 1D cross-correlation (CC) method underestimates the cumulative displacement by 0.20mm, while the underestimation with 2D block matching (BM) is about 0.14 mm after 360 s of ablation. The 1D method also overestimates the size of the ablated region by 5.4% when compared to 2.4% with the 2D method after 720 s of ablation. Hence 2D block matching provides better tracking of temperature variations when compared to the 1D cross-correlation method over the entire duration of the ablation procedure. In addition, results obtained using 1D cross-correlation diverge from

  5. Thermal ablation.

    PubMed

    Webb, Heather; Lubner, Meghan G; Hinshaw, J Louis

    2011-04-01

    Image-guided tumor ablation refers to a group of treatment modalities that have emerged during the past 2 decades as important tools in the treatment of a wide range of tumors throughout the body. Although most widely recognized in the treatment of hepatic and renal malignancies, the role of thermal ablation has expanded to include lesions of the lung, breast, prostate, bone, as well as other organs and its clinical applications continue to increase. In the following article, we discuss the major thermal ablation modalities, their respective strengths and weaknesses, potential complications and how to avoid them, as well as possible future applications.

  6. Optical-thermal mathematical model for endovenous laser ablation of varicose veins.

    PubMed

    van Ruijven, Peter W M; Poluektova, Anna A; van Gemert, Martin J C; Neumann, H A Martino; Nijsten, Tamar; van der Geld, Cees W M

    2014-03-01

    Endovenous laser ablation (EVLA) is successfully used to treat varicose veins. However, the exact working mechanism is still not fully identified and the clinical procedure is not yet standardized. Mathematical modeling of EVLA could strongly improve our understanding of the influence of the various EVLA processes. The aim of this study is to combine Mordon's optical-thermal model with the presence of a strongly absorbing carbonized blood layer on the fiber tip. The model anatomy includes a cylindrically symmetric blood vessel surrounded by an infinite homogenous perivenous tissue. The optical fiber is located in the center of the vessel and is withdrawn with a pullback velocity. The fiber tip includes a small layer of strongly absorbing material, representing the layer of carbonized blood, which absorbs 45% of the emitted laser power. Heat transfer due to boiling bubbles is taken into account by increasing the heat conduction coefficient by a factor of 200 for temperatures above 95 °C. The temperature distribution in the blood, vessel wall, and surrounding medium is calculated from a numerical solution of the bioheat equation. The simulations were performed in MATLAB™ and validated with the aid of an analytical solution. The simulations showed, first, that laser wavelength did virtually not influence the simulated temperature profiles in blood and vessel wall, and, second, that temperatures of the carbonized blood layer varied slightly, from 952 to 1,104 °C. Our improved mathematical optical-thermal EVLA model confirmed previous predictions and experimental outcomes that laser wavelength is not an important EVLA parameter and that the fiber tip reaches exceedingly high temperatures.

  7. A multiphase model for pulsed ns-laser ablation of copper in an ambient gas

    SciTech Connect

    Autrique, D.; Chen, Z.; Alexiades, V.; Bogaerts, A.; Rethfeld, B.

    2012-07-30

    Laser ablation in an ambient gas is nowadays used in a growing number of applications, such as chemical analysis and pulsed laser deposition. Despite the many applications, the technique is still poorly understood. Therefore models describing the material evolution in time during short pulse laser irradiation can be helpful to unravel the puzzle and finally result in the optimization of the related applications. In the present work, a copper target is immersed in helium, initially set at atmospheric pressure and room temperature. Calculations are performed for a Gaussian-shaped laser pulse with a wavelength of 532 nm, full width at half maximum of 6 ns, and laser fluences up to 10 J/cm{sup 2}. In order to describe the transient behaviour in and above the copper target, hydrodynamic equations are solved. An internal energy method accounting for pressure relaxation is applied for the description of the target. In the plume domain a set of conservation equations is solved, assuming local thermodynamic equilibrium. Calculated crater depths and transmission profiles are compared with experimental results and similar trends are found. Our calculations indicate that for the laser fluence regime under study, explosive boiling could play a fundamental role in the plasma formation of metals under ns-pulsed laser irradiation.

  8. Patterns of histological changes following hepatic electrolytic ablation in an ex-vivo perfused model.

    PubMed

    Gravante, Gianpiero; Ong, Seok Ling; West, Kevin; McGregor, Angus; Maddern, Guy J; Metcalfe, Matthew S; Lloyd, David M; Dennison, Ashley R

    2012-10-01

    Electrolytic ablation (EA) destroys the liver by releasing toxic radicles and producing modifications in the local pH without increasing the tissue temperature. We assessed the histological changes produced by EA using an ex-vivo perfused model. Five porcine livers were harvested, preserved in ice and reperfused for six hours in an extracorporeal circuit using autologous normothermic blood. One hour after reperfusion EA was performed and liver biopsies collected at the end of the experiments. The main necrotic zone consisted of coagulative necrosis, sinusoidal dilatation and haemorrhage with an unusual morphological pattern. The coagulative necrosis and haemorrhage affected mainly the peripheral area of the lobule with relative sparing of the area surrounding the centrilobular vein. Contrasting with this sinusoidal dilatation appeared to be more prominent in the centrilobular area. EA produces patterns of tissue destruction that have not been observed with the more commonly used thermal techniques. Further studies should obtain more information about the influence of adjacent biliary and vascular structures so that appropriate clinical trials can be designed.

  9. Dynamic T2-mapping during magnetic resonance guided high intensity focused ultrasound ablation of bone marrow

    NASA Astrophysics Data System (ADS)

    Waspe, Adam C.; Looi, Thomas; Mougenot, Charles; Amaral, Joao; Temple, Michael; Sivaloganathan, Siv; Drake, James M.

    2012-11-01

    Focal bone tumor treatments include amputation, limb-sparing surgical excision with bone reconstruction, and high-dose external-beam radiation therapy. Magnetic resonance guided high intensity focused ultrasound (MR-HIFU) is an effective non-invasive thermotherapy for palliative management of bone metastases pain. MR thermometry (MRT) measures the proton resonance frequency shift (PRFS) of water molecules and produces accurate (<1°C) and dynamic (<5s) thermal maps in soft tissues. PRFS-MRT is ineffective in fatty tissues such as yellow bone marrow and, since accurate temperature measurements are required in the bone to ensure adequate thermal dose, MR-HIFU is not indicated for primary bone tumor treatments. Magnetic relaxation times are sensitive to lipid temperature and we hypothesize that bone marrow temperature can be determined accurately by measuring changes in T2, since T2 increases linearly in fat during heating. T2-mapping using dual echo times during a dynamic turbo spin-echo pulse sequence enabled rapid measurement of T2. Calibration of T2-based thermal maps involved heating the marrow in a bovine femur and simultaneously measuring T2 and temperature with a thermocouple. A positive T2 temperature dependence in bone marrow of 20 ms/°C was observed. Dynamic T2-mapping should enable accurate temperature monitoring during MR-HIFU treatment of bone marrow and shows promise for improving the safety and reducing the invasiveness of pediatric bone tumor treatments.

  10. Model-based feasibility assessment and evaluation of prostate hyperthermia with a commercial MR-guided endorectal HIFU ablation array

    PubMed Central

    Salgaonkar, Vasant A.; Prakash, Punit; Rieke, Viola; Ozhinsky, Eugene; Plata, Juan; Kurhanewicz, John; Hsu, I-C. (Joe); Diederich, Chris J.

    2014-01-01

    Purpose: Feasibility of targeted and volumetric hyperthermia (40–45 °C) delivery to the prostate with a commercial MR-guided endorectal ultrasound phased array system, designed specifically for thermal ablation and approved for ablation trials (ExAblate 2100, Insightec Ltd.), was assessed through computer simulations and tissue-equivalent phantom experiments with the intention of fast clinical translation for targeted hyperthermia in conjunction with radiotherapy and chemotherapy. Methods: The simulations included a 3D finite element method based biothermal model, and acoustic field calculations for the ExAblate ERUS phased array (2.3 MHz, 2.3 × 4.0 cm2, ∼1000 channels) using the rectangular radiator method. Array beamforming strategies were investigated to deliver protracted, continuous-wave hyperthermia to focal prostate cancer targets identified from representative patient cases. Constraints on power densities, sonication durations and switching speeds imposed by ExAblate hardware and software were incorporated in the models. Preliminary experiments included beamformed sonications in tissue mimicking phantoms under MR temperature monitoring at 3 T (GE Discovery MR750W). Results: Acoustic intensities considered during simulation were limited to ensure mild hyperthermia (Tmax < 45 °C) and fail-safe operation of the ExAblate array (spatial and time averaged acoustic intensity ISATA < 3.4 W/cm2). Tissue volumes with therapeutic temperature levels (T > 41 °C) were estimated. Numerical simulations indicated that T > 41 °C was calculated in 13–23 cm3 volumes for sonications with planar or diverging beam patterns at 0.9–1.2 W/cm2, in 4.5–5.8 cm3 volumes for simultaneous multipoint focus beam patterns at ∼0.7 W/cm2, and in ∼6.0 cm3 for curvilinear (cylindrical) beam patterns at 0.75 W/cm2. Focused heating patterns may be practical for treating focal disease in a single posterior quadrant of the prostate and diffused heating patterns may be

  11. Model-based feasibility assessment and evaluation of prostate hyperthermia with a commercial MR-guided endorectal HIFU ablation array

    SciTech Connect

    Salgaonkar, Vasant A. Hsu, I-C.; Diederich, Chris J.; Prakash, Punit; Rieke, Viola; Ozhinsky, Eugene; Kurhanewicz, John; Plata, Juan

    2014-03-15

    Purpose: Feasibility of targeted and volumetric hyperthermia (40–45 °C) delivery to the prostate with a commercial MR-guided endorectal ultrasound phased array system, designed specifically for thermal ablation and approved for ablation trials (ExAblate 2100, Insightec Ltd.), was assessed through computer simulations and tissue-equivalent phantom experiments with the intention of fast clinical translation for targeted hyperthermia in conjunction with radiotherapy and chemotherapy. Methods: The simulations included a 3D finite element method based biothermal model, and acoustic field calculations for the ExAblate ERUS phased array (2.3 MHz, 2.3 × 4.0 cm{sup 2}, ∼1000 channels) using the rectangular radiator method. Array beamforming strategies were investigated to deliver protracted, continuous-wave hyperthermia to focal prostate cancer targets identified from representative patient cases. Constraints on power densities, sonication durations and switching speeds imposed by ExAblate hardware and software were incorporated in the models. Preliminary experiments included beamformed sonications in tissue mimicking phantoms under MR temperature monitoring at 3 T (GE Discovery MR750W). Results: Acoustic intensities considered during simulation were limited to ensure mild hyperthermia (T{sub max} < 45 °C) and fail-safe operation of the ExAblate array (spatial and time averaged acoustic intensity I{sub SATA} < 3.4 W/cm{sup 2}). Tissue volumes with therapeutic temperature levels (T > 41 °C) were estimated. Numerical simulations indicated that T > 41 °C was calculated in 13–23 cm{sup 3} volumes for sonications with planar or diverging beam patterns at 0.9–1.2 W/cm{sup 2}, in 4.5–5.8 cm{sup 3} volumes for simultaneous multipoint focus beam patterns at ∼0.7 W/cm{sup 2}, and in ∼6.0 cm{sup 3} for curvilinear (cylindrical) beam patterns at 0.75 W/cm{sup 2}. Focused heating patterns may be practical for treating focal disease in a single posterior

  12. A methodology for constraining power in finite element modeling of radiofrequency ablation.

    PubMed

    Jiang, Yansheng; Possebon, Ricardo; Mulier, Stefaan; Wang, Chong; Chen, Feng; Feng, Yuanbo; Xia, Qian; Liu, Yewei; Yin, Ting; Oyen, Raymond; Ni, Yicheng

    2016-09-21

    Radiofrequency ablation (RFA) is a minimally invasive thermal therapy for the treatment of cancer, hyperopia, and cardiac tachyarrhythmia. In RFA, the power delivered to the tissue is a key parameter. The objective of this study was to establish a methodology for the finite element modeling of RFA with constant power. Because of changes in the electric conductivity of tissue with temperature, a nonconventional boundary value problem arises in the mathematic modeling of RFA: neither the voltage (Dirichlet condition) nor the current (Neumann condition), but the power, that is, the product of voltage and current was prescribed on part of boundary. We solved the problem using Lagrange multiplier: the product of the voltage and current on the electrode surface is constrained to be equal to the Joule heating. We theoretically proved the equality between the product of the voltage and current on the surface of the electrode and the Joule heating in the domain. We also proved the well-posedness of the problem of solving the Laplace equation for the electric potential under a constant power constraint prescribed on the electrode surface. The Pennes bioheat transfer equation and the Laplace equation for electric potential augmented with the constraint of constant power were solved simultaneously using the Newton-Raphson algorithm. Three problems for validation were solved. Numerical results were compared either with an analytical solution deduced in this study or with results obtained by ANSYS or experiments. This work provides the finite element modeling of constant power RFA with a firm mathematical basis and opens pathway for achieving the optimal RFA power.

  13. The Feasibility of HIFU Liver Ablation Through the Ribcage and Cartilage in a Rodent Model

    NASA Astrophysics Data System (ADS)

    King, Randy; Rieke, Viola; Pauly, Kim Butts

    2009-04-01

    We examined the feasibility of the rat model for the study of HIFU treatment of liver cancer. Significance: HIFU is being developed for the minimally invasive treatment of primary and metastatic liver cancer. In patients, obstruction of the ultrasound by the ribs poses a significant problem, and current studies are under way which investigate the efficacy of focusing around or sonicating between the ribs. Such techniques show promise for patient treatments, but are not feasible when using rodent models. Results: Six recently euthanized (within the hour) Sprague-Dewey rats were used. The hair over the anterior surface was removed. Sonications were performed with the InSightec ExAblate system at 0.95 MHz, 1.1 MHz, and 1.35MHz through the rib cage. Temperature rise was monitored with MRI-based thermometry. Lesions were created in the livers of 5/6 rats. In the five rats, energy levels between 572-1194 Joules produced lesions every time. With energies greater than 1393 Joules, skin damaged was observed which prevented the ultrasound from propagating to the liver on subsequent sonications, accounting for the one study that failed to produce lesions. No thermal damage was observed at the skin with sonications that resulted in liver lesions, and no significant heating was observed at or near the skin in the MRI temperature maps. Conclusions: It is possible to ignore the effect of ribs and sternum in rodents and create lesions within the rat liver. This technique opens the door to using hepatocellular carcinoma rodent models in HIFU studies.

  14. Catheter Ablation

    MedlinePlus

    ... you during the procedure. Machines will measure your heart’s activity. All types of ablation require cardiac catheterization to place flexible tubes, or catheters, inside your heart to make the scars. Your doctor will clean ...

  15. Ultrasound ablation enhances drug accumulation and survival in mammary carcinoma models

    PubMed Central

    Wong, Andrew W.; Fite, Brett Z.; Liu, Yu; Kheirolomoom, Azadeh; Seo, Jai W.; Watson, Katherine D.; Mahakian, Lisa M.; Tam, Sarah M.; Zhang, Hua; Foiret, Josquin; Borowsky, Alexander D.; Ferrara, Katherine W.

    2015-01-01

    Magnetic resonance–guided focused ultrasound (MRgFUS) facilitates noninvasive image-guided conformal thermal therapy of cancer. Yet in many scenarios, the sensitive tissues surrounding the tumor constrain the margins of ablation; therefore, augmentation of MRgFUS with chemotherapy may be required to destroy remaining tumor. Here, we used 64Cu-PET-CT, MRI, autoradiography, and fluorescence imaging to track the kinetics of long-circulating liposomes in immunocompetent mammary carcinoma–bearing FVB/n and BALB/c mice. We observed a 5-fold and 50-fold enhancement of liposome and drug concentration, respectively, within MRgFUS thermal ablation–treated tumors along with dense accumulation within the surrounding tissue rim. Ultrasound-enhanced drug accumulation was rapid and durable and greatly increased total tumor drug exposure over time. In addition, we found that the small molecule gadoteridol accumulates around and within ablated tissue. We further demonstrated that dilated vasculature, loss of vascular integrity resulting in extravasation of blood cells, stromal inflammation, and loss of cell-cell adhesion and tissue architecture all contribute to the enhanced accumulation of the liposomes and small molecule probe. The locally enhanced liposome accumulation was preserved even after a multiweek protocol of doxorubicin-loaded liposomes and partial ablation. Finally, by supplementing ablation with concurrent liposomal drug therapy, a complete and durable response was obtained using protocols for which a sub-mm rim of tumor remained after ablation. PMID:26595815

  16. Emission features and expansion dynamics of nanosecond laser ablation plumes at different ambient pressures

    SciTech Connect

    Farid, N.; Harilal, S. S. Hassanein, A.; Ding, H.

    2014-01-21

    The influence of ambient pressure on the spectral emission features and expansion dynamics of a plasma plume generated on a metal target has been investigated. The plasma plumes were generated by irradiating Cu targets using 6 ns, 1064 nm pulses from a Q-switched Nd:YAG laser. The emission and expansion dynamics of the plasma plumes were studied by varying air ambient pressure levels ranging from vacuum to atmospheric pressure. The ambient pressure levels were found to affect both the line intensities and broadening along with the signal to background and signal to noise ratios and the optimum pressure conditions for analytical applications were evaluated. The characteristic plume parameters were estimated using emission spectroscopy means and noticed that the excitation temperature peaked ∼300 Torr, while the electron density showed a maximum ∼100 Torr. Fast-gated images showed a complex interaction between the plume and background air leading to changes in the plume geometry with pressure as well as time. Surface morphology of irradiated surface showed that the pressure of the ambient gas affects the laser-target coupling significantly.

  17. A unified model to determine the energy partitioning between target and plasma in nanosecond laser ablation of silicon

    SciTech Connect

    Galasso, G.; Kaltenbacher, M.; Tomaselli, A.; Scarpa, D.

    2015-03-28

    In semiconductor industry, pulsed nanosecond lasers are widely applied for the separation of silicon wafers. Here, the high intensities employed activate a cascade of complex multi-physical and multi-phase mechanisms, which finally result in the formation of a laser induced plasma, shielding the target from the incoming laser beam. Such induced plasma plume, by preventing the laser to effectively reach the target, reduces the overall efficiency and controllability of the ablation process. Modelling can be a useful tool in the optimization of industrial laser applications, allowing a deeper understanding of the way the laser energy distributes between target and induced plasma. Nevertheless, the highly multi-physical character of laser ablation poses serious challenges on the implementation of the various mechanisms underlying the process within a common modelling framework. A novel strategy is here proposed in order to simulate in a simplified, yet physically consistent way, a typical industrial application as laser ablation of silicon wafers. Reasonable agreement with experimental findings is obtained. Three fundamental mechanisms have been identified as the main factors influencing the accuracy of the numerical predictions: the transition from evaporative to volumetric mass removal occurring at critical temperature, the collisional and radiative processes underlying the initial plasma formation stage and the increased impact of the liquid ejection mechanism when a sub-millimeter laser footprint is used.

  18. Thermal--electrical finite element modelling for radio frequency cardiac ablation: effects of changes in myocardial properties.

    PubMed

    Tungjitkusolmun, S; Woo, E J; Cao, H; Tsai, J Z; Vorperian, V R; Webster, J G

    2000-09-01

    Finite element (FE) analysis has been utilised as a numerical tool to determine the temperature distribution in studies of radio frequency (RF) cardiac ablation. However, none of the previous FE analyses clarified such computational aspects as software requirements, computation time or convergence test. In addition, myocardial properties included in the previous models vary greatly. A process of FE modelling of a system that included blood, myocardium, and an ablation catheter with a thermistor embedded at the tip is described. The bio-heat equation is solved to determine the temperature distribution in myocardium using a commercial software application (ABAQUS). A Cauchy convergence test (epsilon = 0.1 degree C) was performed and it is concluded that the optimal number of elements for the proposed system is 24610. The effects of changes in myocardial properties (+/- 50% electric conductivity, +100%/-50% thermal conductivity, and +100%/-50% specific heat capacity) in both power-controlled (PCRFA) and temperature-controlled RF ablation (TCRFA) were studied. Changes in myocardial properties affect the results of the FE analyses of PCRFA more than those of TCRFA, and the maximum changes in lesion volumes were -58.6% (-50% electric conductivity), -60.7% (+100% thermal conductivity), and +43.2% (-50% specific heat).

  19. High resolution modelling of snow accumulation and ablation in alpine regions

    NASA Astrophysics Data System (ADS)

    Byrne, J.; Kienzle, S.; Duke, G.; Lapp, S.; Taylor, B.; Neilsen, D.

    2005-12-01

    This work is to combine downscaled climate change scenarios with several meso-micro scale climatologic assessments of alpine snow accumulation and ablation over winter to evaluate the impacts of forecast climate change on snowpack conditions in the Oldman watershed in southern Alberta and Okanagan watershed in southern British Columbia. The synoptic analysis was used to generate long term precipitation time series scenarios using the Canadian Centre for Climate Modeling and Analysis (CCCma) CGCM1 and CGCM2 coupled general circulation model runs. Forecast changes in wintertime synoptic conditions over western North America provided estimates of changing precipitation regimes for the historical (1961-90) and future time periods (2021-50). Temperature changes as forecast by the GCCM1 and CGCM2 model runs were applied to both study basins. The historic and future climate scenarios were applied to both watersheds with several novel meso and micro scale alpine hydrometeorology models and a range of spatial analysis techniques. Work in the Okanagan basin used empirical analysis to de-trend the historical meteorological data and interpolation routines were applied to develop daily high resolution gridded surfaces of temperature and precipitation. The analysis reveals that temperature will play a dominant role in future SWE accumulations and related water supplies from these alpine watersheds. Midwinter melting and conversion of snow to rain will reduce snow accumulations over winter, resulting in much lower spring runoff volumes in an average year. The overall decline in spring maximum SWE for the future period relative to the historic data was about 30% in the Okanagan and about 40% for the Oldman River basin. However, in warm dry years, SWE declines much more, indicating there could be dramatic water shortages in future. The alpine hydrometeorological models need more development, evaluation and validation. Our estimates of SWE at high elevations are likely subject to

  20. Launch Vehicle Dynamics Demonstrator Model

    NASA Technical Reports Server (NTRS)

    1963-01-01

    Launch Vehicle Dynamics Demonstrator Model. The effect of vibration on launch vehicle dynamics was studied. Conditions included three modes of instability. The film includes close up views of the simulator fuel tank with and without stability control. [Entire movie available on DVD from CASI as Doc ID 20070030984. Contact help@sti.nasa.gov

  1. Generative models of conformational dynamics.

    PubMed

    Langmead, Christopher James

    2014-01-01

    Atomistic simulations of the conformational dynamics of proteins can be performed using either Molecular Dynamics or Monte Carlo procedures. The ensembles of three-dimensional structures produced during simulation can be analyzed in a number of ways to elucidate the thermodynamic and kinetic properties of the system. The goal of this chapter is to review both traditional and emerging methods for learning generative models from atomistic simulation data. Here, the term 'generative' refers to a model of the joint probability distribution over the behaviors of the constituent atoms. In the context of molecular modeling, generative models reveal the correlation structure between the atoms, and may be used to predict how the system will respond to structural perturbations. We begin by discussing traditional methods, which produce multivariate Gaussian models. We then discuss GAMELAN (GRAPHICAL MODELS OF ENERGY LANDSCAPES), which produces generative models of complex, non-Gaussian conformational dynamics (e.g., allostery, binding, folding, etc.) from long timescale simulation data.

  2. Quantitative modeling of the accuracy in registering preoperative patient-specific anatomic models into left atrial cardiac ablation procedures

    SciTech Connect

    Rettmann, Maryam E. Holmes, David R.; Camp, Jon J.; Cameron, Bruce M.; Robb, Richard A.; Kwartowitz, David M.; Gunawan, Mia; Johnson, Susan B.; Packer, Douglas L.; Dalegrave, Charles; Kolasa, Mark W.

    2014-02-15

    Purpose: In cardiac ablation therapy, accurate anatomic guidance is necessary to create effective tissue lesions for elimination of left atrial fibrillation. While fluoroscopy, ultrasound, and electroanatomic maps are important guidance tools, they lack information regarding detailed patient anatomy which can be obtained from high resolution imaging techniques. For this reason, there has been significant effort in incorporating detailed, patient-specific models generated from preoperative imaging datasets into the procedure. Both clinical and animal studies have investigated registration and targeting accuracy when using preoperative models; however, the effect of various error sources on registration accuracy has not been quantitatively evaluated. Methods: Data from phantom, canine, and patient studies are used to model and evaluate registration accuracy. In the phantom studies, data are collected using a magnetically tracked catheter on a static phantom model. Monte Carlo simulation studies were run to evaluate both baseline errors as well as the effect of different sources of error that would be present in a dynamicin vivo setting. Error is simulated by varying the variance parameters on the landmark fiducial, physical target, and surface point locations in the phantom simulation studies. In vivo validation studies were undertaken in six canines in which metal clips were placed in the left atrium to serve as ground truth points. A small clinical evaluation was completed in three patients. Landmark-based and combined landmark and surface-based registration algorithms were evaluated in all studies. In the phantom and canine studies, both target registration error and point-to-surface error are used to assess accuracy. In the patient studies, no ground truth is available and registration accuracy is quantified using point-to-surface error only. Results: The phantom simulation studies demonstrated that combined landmark and surface-based registration improved

  3. Model-based feasibility assessment and evaluation of prostate hyperthermia with a commercial MR-guided endorectal HIFU ablation array

    NASA Astrophysics Data System (ADS)

    Salgaonkar, Vasant A.; Prakash, Punit; Rieke, Viola; Ozhinsky, Eugene; Plata, Juan; Kurhanewicz, John; Hsu, I.-C. Joe; Diederich, Chris J.

    2017-03-01

    Here, operational modifications to a commercial MR-guided ultrasound phased array designed for prostate ablation (part of ExAblate 2100, InSightec Ltd) are presented for the delivery of protracted mild (40 - 45°C) hyperthermia to large contiguous target volumes in the prostate. This high-intensity focused ultrasound phased array is already in clinical trials for prostate ablation, and can be potentially fast-tracked for clinical hyperthermia treatments. As a part of this preliminary feasibility study, patient-specific numerical simulations were performed using Pennes bioheat model and acoustic field calculations were conducted using the rectangular radiator method for the ExAblate prostate array (2.3 MHz, 2.3×4.0 cm2, ˜1000 channels). Thermal solutions were computed using 3D finite element methods (FEM) implemented using Comsol Multiphysics (Comsol Inc). The patient-specific geometries were created through manual segmentation of anatomical structures from representative patient MRIs and 3D rendering (Mimics 15.01, Materialise) and generation of finite element meshes (3-Matic 7.01, Materialise). Array beamforming was employed and acoustic fields were synthesized (Matlab 2010a, MathWorks) to deliver protracted continuous wave hyperthermia to focal prostate cancer targets identified in the patient-specific models. Constraints on power densities, sonication durations and switching speeds imposed by ExAblate hardware and software were incorporated in the models. Sonication strategies explored during modeling were implemented on the ExAblate prostate array and preliminary experiments were conducted in tissue mimicking phantoms under MR temperature monitoring at 3 T (GE Discovery MR750W). Therapeutic temperatures (40 - 45 °C) could be established conformably in focal cancer volumes in a single prostate quadrant using focused heating patterns and hemi-gland heating was possible using diffused heating patterns (iso-phase or diverging). T>41 °C was calculated in 13

  4. SSME structural dynamic model development

    NASA Technical Reports Server (NTRS)

    Foley, M. J.; Tilley, D. M.; Welch, C. T.

    1983-01-01

    A mathematical model of the Space Shuttle Main Engine (SSME) as a complete assembly, with detailed emphasis on LOX and High Fuel Turbopumps is developed. The advantages of both complete engine dynamics, and high fidelity modeling are incorporated. Development of this model, some results, and projected applications are discussed.

  5. Ablating adult neurogenesis in the rat has no effect on spatial processing: evidence from a novel pharmacogenetic model.

    PubMed

    Groves, James O; Leslie, Isla; Huang, Guo-Jen; McHugh, Stephen B; Taylor, Amy; Mott, Richard; Munafò, Marcus; Bannerman, David M; Flint, Jonathan

    2013-01-01

    The function of adult neurogenesis in the rodent brain remains unclear. Ablation of adult born neurons has yielded conflicting results about emotional and cognitive impairments. One hypothesis is that adult neurogenesis in the hippocampus enables spatial pattern separation, allowing animals to distinguish between similar stimuli. We investigated whether spatial pattern separation and other putative hippocampal functions of adult neurogenesis were altered in a novel genetic model of neurogenesis ablation in the rat. In rats engineered to express thymidine kinase (TK) from a promoter of the rat glial fibrillary acidic protein (GFAP), ganciclovir treatment reduced new neurons by 98%. GFAP-TK rats showed no significant difference from controls in spatial pattern separation on the radial maze, spatial learning in the water maze, contextual or cued fear conditioning. Meta-analysis of all published studies found no significant effects for ablation of adult neurogenesis on spatial memory, cue conditioning or ethological measures of anxiety. An effect on contextual freezing was significant at a threshold of 5% (P = 0.04), but not at a threshold corrected for multiple testing. The meta-analysis revealed remarkably high levels of heterogeneity among studies of hippocampal function. The source of this heterogeneity remains unclear and poses a challenge for studies of the function of adult neurogenesis.

  6. Local delivery of a selective androgen receptor modulator failed as an anabolic agent in a rat bone marrow ablation model

    PubMed Central

    Aro, Hannu T; Kulkova, Julia; Moritz, Niko; Kähkönen, Esa; Mattila, Riina H

    2015-01-01

    Background and purpose — Selective androgen receptor modulators (SARMs) have been developed to have systemic anabolic effects on bones and muscles without the adverse effects of steroidal androgens. One unexplored therapeutic option is the targeted application of SARMs for the enhancement of local new bone formation. We evaluated the osteogenic efficacy of a locally released SARM (ORM-11984). Methods — ORM-11984 was mixed with a copolymer of L-lactide and ɛ-caprolactone (PLCL). An in vitro dissolution test confirmed the sustainable release of ORM-11984 from the matrix. A bone marrow ablation model was used in female Sprague-Dawley rats. Implants containing 10%, 30%, or 50% ORM-11984 by weight or pure PLCL were inserted into the medullary canal of the ablated tibia. At 6 and 12 weeks, the volume of intramedullary new bone and the perimeter of bone-implant contact were measured by micro-computed tomography and histomorphometry. Results — Contrary to our hypothesis, there was a negative correlation between the amount of new bone around the implant and the dose of ORM-11984. There was only a mild (and not statistically significant) enhancement of bone formation in ablated bones subjected to the lowest dose of the SARM (10%). Interpretation — This study suggests that intramedullary/endosteal osteogenesis had a negative, dose-dependent response to locally released SARM. This result highlights the complexity of androgenic effects on bones and also suggests that there are biological limits to the targeted local application of SARMs. PMID:26198725

  7. Genetic Ablation of Parietal Cells in Transgenic Mice: A New Model for Analyzing Cell Lineage Relationships in the Gastric Mucosa

    NASA Astrophysics Data System (ADS)

    Canfield, Victor; West, A. Brian; Goldenring, James R.; Levenson, Robert

    1996-03-01

    The gastric mucosa of mammalian stomach contains several differentiated cell types specialized for the secretion of acid, digestive enzymes, mucus, and hormones. Understanding whether each of these cell lineages is derived from a common stem cell has been a challenging problem. We have used a genetic approach to analyze the ontogeny of progenitor cells within mouse stomach. Herpes simplex virus 1 thymidine kinase was targeted to parietal cells within the gastric mucosa of transgenic mice, and parietal cells were ablated by treatment of animals with the antiherpetic drug ganciclovir. Ganciclovir treatment produced complete ablation of parietal cells, dissolution of gastric glands, and loss of chief and mucus-producing cells. Termination of drug treatment led to the reemergence of all major gastric epithelial cell types and restoration of glandular architecture. Our results imply the existence of a pluripotent stem cell for the gastric mucosa. Parietal cell ablation should provide a model for analyzing cell lineage relationships within the stomach as well as mechanisms underlying gastric injury and repair.

  8. Radiofrequency ablation suppresses distant tumour growth in a novel rat model of multifocal hepatocellular carcinoma.

    PubMed

    Erös de Bethlenfalva-Hora, Caroline; Mertens, Joachim C; Piguet, Anne-Christine; Kettenbach, Joachim; Schmitt, Johannes; Terracciano, Luigi; Weimann, Rosemarie; Dufour, Jean-François; Geier, Andreas

    2014-02-01

    RFA (radiofrequency ablation) is an established therapy for HCC (hepatocellular carcinoma). The multikinase inhibitor sorafenib prolongs survival in advanced HCC. We examined the effects of RFA alone and in combination with sorafenib on a bystanding tumour in a two-tumour rat model of HCC. A total of 80 rats were implanted with two liver tumours and randomized to four treatment groups: vehicle and sham operation (control), sorafenib and sham operation (Sora/Sham), vehicle and RFA (Vh/RFA), and sorafenib and RFA (Sora/RFA) (n=10/group per time point). RFA or sham-operation was performed on the left lobe tumour on day 15. Animals were killed at day 18 and day 30. Non-RFA-targeted right lobe tumours were analysed for angiogenesis, growth factors [HGF (hepatocyte growth factor), EGF (epidermal growth factor) and VEGF (vascular endothelial growth factor)] and infiltrating immune cells (CD3 and CD68). At day 30, the non-RFA-targeted tumours were significantly smaller in all three treatment groups compared with control (Sora/Sham P≤0.0001, Vh/RFA P=0.005 and Sora/RFA P≤0.0001). The smallest tumours were observed in animals treated with a combination of sorafenib and RFA, whereas the size reduction seen in the RFA-only group indicated an RFA-mediated distant suppression of tumour growth. Growth factor measurement revealed transiently decreased EGF levels after RFA (P=0.008), whereas sorafenib treatment decreased HGF levels (P=0.001). MVD (microvessel density) was reduced by sorafenib (P=0.002) despite increased VEGF levels (P≤0.0001). The immune parameters revealed augmented T-cells and IL-10 (interleukin 10) levels in all three treatment groups; sorafenib additionally increased macrophage numbers (P≤0.0001). RFA and sorafenib alone resulted in significant volume reduction of the non-RFA-targeted tumour; this effect was enhanced when both modalities were combined.

  9. Multiple Probe Hepatic Radio-Frequency Ablation: Ex-Vivo Experiments in the Porcine Model

    DTIC Science & Technology

    2007-11-02

    temperatures) were scaled to 80% of the data used for the first model. The model of dynamic system B approximated a situation where higher blood...sample B (initial temperature 27 °C). t ee KeKu n m mm nn ∆⋅ +⋅+⋅= = − 1 1 ip 2 (2) 0 20 40 60 80 100 0 200 400 Time (s) A ve ra g e T ip T em

  10. Predictive models of forest dynamics.

    PubMed

    Purves, Drew; Pacala, Stephen

    2008-06-13

    Dynamic global vegetation models (DGVMs) have shown that forest dynamics could dramatically alter the response of the global climate system to increased atmospheric carbon dioxide over the next century. But there is little agreement between different DGVMs, making forest dynamics one of the greatest sources of uncertainty in predicting future climate. DGVM predictions could be strengthened by integrating the ecological realities of biodiversity and height-structured competition for light, facilitated by recent advances in the mathematics of forest modeling, ecological understanding of diverse forest communities, and the availability of forest inventory data.

  11. COLD-SAT dynamic model

    NASA Technical Reports Server (NTRS)

    Adams, Neil S.; Bollenbacher, Gary

    1992-01-01

    This report discusses the development and underlying mathematics of a rigid-body computer model of a proposed cryogenic on-orbit liquid depot storage, acquisition, and transfer spacecraft (COLD-SAT). This model, referred to in this report as the COLD-SAT dynamic model, consists of both a trajectory model and an attitudinal model. All disturbance forces and torques expected to be significant for the actual COLD-SAT spacecraft are modeled to the required degree of accuracy. Control and experimental thrusters are modeled, as well as fluid slosh. The model also computes microgravity disturbance accelerations at any specified point in the spacecraft. The model was developed by using the Boeing EASY5 dynamic analysis package and will run on Apollo, Cray, and other computing platforms.

  12. Dynamic Modeling of ALS Systems

    NASA Technical Reports Server (NTRS)

    Jones, Harry

    2002-01-01

    The purpose of dynamic modeling and simulation of Advanced Life Support (ALS) systems is to help design them. Static steady state systems analysis provides basic information and is necessary to guide dynamic modeling, but static analysis is not sufficient to design and compare systems. ALS systems must respond to external input variations and internal off-nominal behavior. Buffer sizing, resupply scheduling, failure response, and control system design are aspects of dynamic system design. We develop two dynamic mass flow models and use them in simulations to evaluate systems issues, optimize designs, and make system design trades. One model is of nitrogen leakage in the space station, the other is of a waste processor failure in a regenerative life support system. Most systems analyses are concerned with optimizing the cost/benefit of a system at its nominal steady-state operating point. ALS analysis must go beyond the static steady state to include dynamic system design. All life support systems exhibit behavior that varies over time. ALS systems must respond to equipment operating cycles, repair schedules, and occasional off-nominal behavior or malfunctions. Biological components, such as bioreactors, composters, and food plant growth chambers, usually have operating cycles or other complex time behavior. Buffer sizes, material stocks, and resupply rates determine dynamic system behavior and directly affect system mass and cost. Dynamic simulation is needed to avoid the extremes of costly over-design of buffers and material reserves or system failure due to insufficient buffers and lack of stored material.

  13. Influence of the embryonic preplate on the organization of the cerebral cortex: a targeted ablation model.

    PubMed

    Xie, Y; Skinner, E; Landry, C; Handley, V; Schonmann, V; Jacobs, E; Fisher, R; Campagnoni, A

    2002-10-15

    Transgenic mice were generated to permit the targeted ablation of cortical preplate cells at the time they are born. In these mice, the 1.3 kb golli promoter of the myelin basic protein gene was used to drive the herpes simplex virus thymidine kinase (TK) transgene in cortical preplate cells. Heterozygous transgenic pairs were bred, and pregnant dams were treated with ganciclovir at embryonic days 11-12 to ablate preplate cells at the time the preplate was forming. This paradigm exposed control (TK-) and experimental (TK+) littermates to exactly the same conditions. Embryological ablation of preplate cells led to an early disruption of the radial glial framework and subplate structure in the developing cortex and dramatically altered the cellular lamination and connectivity of the cortical plate. The disturbed radial glial network contributed to an impaired radial migration of neurons into the cortical plate from the ventricular zone. The cortical plate became dyslaminated, and there was a substantial reduction in short- and long-range cortical projections within the cortex and to subcortical regions. Cell death within the cortical plate and the proliferative zones was substantially increased in the ablated animals. After birth, a cortical lesion developed, which became exacerbated with the secondary onset of hydrocephaly in the second postnatal week. The results underscore the critical importance of the preplate in cortex formation, mediated through its guidance of the formation of radial glial scaffolding, subsequent neuronal migration into the incipient cortical plate, and the final arrangement of its vertical organization and cellular connectivity.

  14. Enhancement of Intermittent Androgen Ablation Therapy by Finasteride Administration in Animal Models

    DTIC Science & Technology

    2004-02-01

    One critically important problem in prostate cancer research is to find new approaches to slow down the transition of prostate cancer from an...androgen-dependent state to a lethal androgen-refractory state. Intermittent androgen ablation therapy may slow down the development of androgen refractory

  15. Enhancement of Intermittent Androgen Ablation Therapy by Finasteride Administration in Animal Models

    DTIC Science & Technology

    2003-02-01

    One critically important problem in prostate cancer research is to find new approaches to slow down the transition of prostate cancer from an...androgen-dependent state to a lethal androgen-refractory state. Intermittent androgen ablation therapy may slow down the development of androgen refractory

  16. Aircraft Dynamic Modeling in Turbulence

    NASA Technical Reports Server (NTRS)

    Morelli, Eugene A.; Cunninham, Kevin

    2012-01-01

    A method for accurately identifying aircraft dynamic models in turbulence was developed and demonstrated. The method uses orthogonal optimized multisine excitation inputs and an analytic method for enhancing signal-to-noise ratio for dynamic modeling in turbulence. A turbulence metric was developed to accurately characterize the turbulence level using flight measurements. The modeling technique was demonstrated in simulation, then applied to a subscale twin-engine jet transport aircraft in flight. Comparisons of modeling results obtained in turbulent air to results obtained in smooth air were used to demonstrate the effectiveness of the approach.

  17. Model describes subsea control dynamics

    SciTech Connect

    Not Available

    1988-02-01

    A mathematical model of the hydraulic control systems for subsea completions and their umbilicals has been developed and applied successfully to Jabiru and Challis field production projects in the Timor Sea. The model overcomes the limitations of conventional linear steady state models and yields for the hydraulic system an accurate description of its dynamic response, including the valve shut-in times and the pressure transients. Results of numerical simulations based on the model are in good agreement with measurements of the dynamic response of the tree valves and umbilicals made during land testing.

  18. Experimental research on separation, heat transfer and ablation of the model of flat plate in supersonic turbulent flow

    NASA Astrophysics Data System (ADS)

    Yinda, H.

    1986-06-01

    A ground test apparatus has been developed for the simulation of heating and pressure profiles around the control surface of controllable lifting vehicles, with a view to determining heat shield surface ablation characteristics. The results obtained from initial test runs indicate that when there is a transverse seam in front of the apex of the wing, separation effects are weakened. Attention is given to correlation formulas for the length of the separation region in two-dimensional models with wind height, and in three-dimensional models with wing width.

  19. Dynamic Eye Model.

    ERIC Educational Resources Information Center

    Journal of Science and Mathematics Education in Southeast Asia, 1981

    1981-01-01

    Instructions (with diagrams and parts list) are provided for constructing an eye model with a pliable lens made from a plastic bottle which can vary its convexity to accommodate changing positions of an object being viewed. Also discusses concepts which the model can assist in developing. (Author/SK)

  20. Modification of Rayleigh-Plesset Theory for Reproducing Dynamics of Cavitation Bubbles in Liquid-Phase Laser Ablation

    NASA Astrophysics Data System (ADS)

    Soliman, Wafaa; Nakano, Tetsutaro; Takada, Noriharu; Sasaki, Koichi

    2010-11-01

    The solution of the conventional Rayleigh-Plesset equation did not agree with the experimental results on the temporal variations of the sizes of cavitation bubbles produced by laser ablation in water. In this work, we modified the conventional Rayleigh-Plesset theory in the following two points to reproduce the experimental observation theoretically. One was to introduce the effect of the contact angle among the water, the cavitation bubble, and the ablation target. The other was to treat the surface tension and the kinematic viscosity coefficient of water as additional adjusting parameters to fit the theoretical result with the experimental observation. The latter modification was effective especially for laser ablation in the pressurized water. Better agreement between the theoretical and the experimental results was realized with the help of these modifications, but anomalous thermodynamic parameters were necessary to obtain the best fitting. We evaluated the pressures and the temperatures inside the cavitation bubbles.

  1. Visualization of cardiac dynamics using physics-based deformable model

    NASA Astrophysics Data System (ADS)

    Lin, Wei-te; Robb, Richard A.

    2000-04-01

    Modeling of moving anatomic structures is complicated by the complexity of motion intrinsic and extrinsic to the structures. However when motion is cyclical, such as in heart, effective dynamic modeling can be approached using modern fast imaging techniques, which provide 3D structural data. Data may be acquired as a sequence of 3D volume images throughout the cardiac cycle. To model the intricate non- linear motion of the heart, we created a physics-based surface model which can realistically deform between successive time points in the cardiac cycle, yielding a dynamic 4D model of cardiac motion. Sequences of fifteen 3D volume images of intact canine beating hearts were acquired during compete cardiac cycles using the Dynamic Spatial Reconstructor and the Electron Beam CT. The chambers of the heart were segmented at successive time points, typically at 1/15-second intervals. The left ventricle of the first item point was reconstructed as an initial triangular mesh. A mass-spring physics-based deformable model, which can expand and shrink with local contraction and stretching forces distributed in an anatomically accurate simulation of cardiac motion, was applied to the initial mesh and allowed the initial mesh to deform to fit the left ventricle in successive time increments of the sequence. The resultant 4D model can be interactively transformed and displayed with associated regional electrical activity mapped onto the anatomic surfaces, producing a 5D mode, which faithfully exhibits regional cardiac contraction and relaxation patterns over the entire heart. For acquisition systems that may provide only limited 4D data, the model can provide interpolated anatomic shape between time points. This physics-based deformable model accurately represents dynamic cardiac structural changes throughout the cardiac cycle. Such models provides the framework for minimizing the number of time points required to usefully depict regional motion of myocardium and allowing

  2. Some controversies in endovenous laser ablation of varicose veins addressed by optical-thermal mathematical modeling.

    PubMed

    Poluektova, Anna A; Malskat, Wendy S J; van Gemert, Martin J C; Vuylsteke, Marc E; Bruijninckx, Cornelis M A; Neumann, H A Martino; van der Geld, Cees W M

    2014-03-01

    Minimally invasive treatment of varicose veins by endovenous laser ablation (EVLA) becomes more and more popular. However, despite significant research efforts performed during the last years, there is still a lack of agreement regarding EVLA mechanisms and therapeutic strategies. The aim of this article is to address some of these controversies by utilizing optical-thermal mathematical modeling. Our model combines Mordon's light absorption-based optical-thermal model with the thermal consequences of the thin carbonized blood layer on the laser fiber tip that is heated up to temperatures of around 1,000 °C due to the absorption of about 45% of the laser light. Computations were made in MATLAB. Laser wavelengths included were 810, 840, 940, 980, 1,064, 1,320, 1,470, and 1,950 nm. We addressed (a) the effect of direct light absorption by the vein wall on temperature behavior, comparing computations by using normal and zero wall absorption; (b) the prediction of the influence of wavelength on the temperature behavior; (c) the effect of the hot carbonized blood layer surrounding the fiber tip on temperature behavior, comparing wall temperatures from using a hot fiber tip and one kept at room temperature; (d) the effect of blood emptying the vein, simulated by reducing the inside vein diameter from 3 down to 0.8 mm; (e) the contribution of absorbed light energy to the increase in total energy at the inner vein wall in the time period where the highest inner wall temperature was reached; (f) the effect of laser power and pullback velocity on wall temperature of a 2-mm inner diameter vein, at a power/velocity ratio of 30 J/cm at 1,470 nm; (g) a comparison of model outcomes and clinical findings of EVLA procedures at 810 nm, 11 W, and 1.25 mm/s, and 1,470 nm, 6 W, and 1 mm/s, respectively. Interestingly, our model predicts that the dominating mechanism for heating up the vein wall is not direct absorption of the laser light by the vein wall but, rather, heat flow to the

  3. Deletion of Mitogen-Activated Protein Kinase Phosphatase 1 Modifies the Response to Mechanical Bone Marrow Ablation in a Mouse Model

    PubMed Central

    Carlson, Jodi; Zhang, Qing; Bennett, Anton; Vignery, Agnès

    2009-01-01

    The maintenance of bone mass results from a delicate balance between bone formation by osteoblasts and bone resorption by osteoclasts. Understanding these processes is essential for the development of effective treatments for skeletal diseases. Mechanical bone marrow ablation provides a unique animal model to study bone repair and the roles of specific genes in this process. Ablation of marrow induces the formation of intramembranous bone in the medullary cavity, which is subsequently resorbed by osteoclasts. We used this model to ask whether mitogen-activated protein kinase (MAPK) phosphatase 1 (MKP1) affects the bone formed in response to marrow ablation. MKP1 is a negative regulator of MAPK signaling, which is essential for a wide variety of cellular mechanisms, including those critical for osteoblast and osteoclast function. At 10 d after mechanical bone marrow ablation, the femurs of male mkp1+/+ and mkp1−/− mice were compared with those of unoperated baseline mice by using radiography, peripheral quantitative computed tomography, and microcomputed tomography. Both genotypes developed increased bone mass after marrow ablation, but the increase was more pronounced in mkp1−/− mice compared with mkp1+/+ mice. These results indicate that MKP1 affects the bone formed in response to marrow ablation and suggest encouraging possibilities for the use of inhibitors of MKP1 to modulate bone repair. PMID:19619411

  4. Macrophage Ablation Reduces M2-Like Populations and Jeopardizes Tumor Growth in a MAFIA-Based Glioma Model12

    PubMed Central

    Gabrusiewicz, Konrad; Hossain, Mohammad B.; Cortes-Santiago, Nahir; Fan, Xuejun; Kaminska, Bozena; Marini, Frank C.; Fueyo, Juan; Gomez-Manzano, Candelaria

    2015-01-01

    Monocytes/macrophages are an influential component of the glioma microenvironment. However, understanding their diversity and plasticity constitute one of the most challenging areas of research due to the paucity of models to study these cells' inherent complexity. Herein, we analyzed the role of monocytes/macrophages in glioma growth by using a transgenic model that allows for conditional ablation of this cell population. We modeled glioma using intracranial GL261-bearing CSF-1R–GFP+ macrophage Fas-induced apoptosis (MAFIA) transgenic mice. Conditional macrophage ablation was achieved by exposure to the dimerizer AP20187. Double immunofluorescence was used to characterize M1- and M2-like monocytes/macrophages during tumor growth and after conditional ablation. During glioma growth, the monocyte/macrophage population consisted predominantly of M2 macrophages. Conditional temporal depletion of macrophages reduced the number of GFP+ cells, targeting mainly the repopulation of M2-polarized cells, and altered the appearance of M1-like monocytes/macrophages, which suggested a shift in the M1/M2 macrophage balance. Of interest, compared with control-treated mice, macrophage-depleted mice had a lower tumor mitotic index, microvascular density, and reduced tumor growth. These results demonstrated the possibility of studying in vivo the role and phenotype of macrophages in gliomas and suggested that transitory depletion of CSF-1R+ population influences the reconstitutive phenotypic pool of these cells, ultimately suppressing tumor growth. The MAFIA model provides a much needed advance in defining the role of macrophages in gliomas. PMID:25925380

  5. Cavitation-enhanced nonthermal ablation in deep brain targets: feasibility in a large animal model.

    PubMed

    Arvanitis, Costas D; Vykhodtseva, Natalia; Jolesz, Ferenc; Livingstone, Margaret; McDannold, Nathan

    2016-05-01

    OBJECT Transcranial MRI-guided focused ultrasound (TcMRgFUS) is an emerging noninvasive alternative to surgery and radiosurgery that is undergoing testing for tumor ablation and functional neurosurgery. The method is currently limited to central brain targets due to skull heating and other factors. An alternative ablative approach combines very low intensity ultrasound bursts and an intravenously administered microbubble agent to locally destroy the vasculature. The objective of this work was to investigate whether it is feasible to use this approach at deep brain targets near the skull base in nonhuman primates. METHODS In 4 rhesus macaques, targets near the skull base were ablated using a clinical TcMRgFUS system operating at 220 kHz. Low-duty-cycle ultrasound exposures (sonications) were applied for 5 minutes in conjunction with the ultrasound contrast agent Definity, which was administered as a bolus injection or continuous infusion. The acoustic power level was set to be near the inertial cavitation threshold, which was measured using passive monitoring of the acoustic emissions. The resulting tissue effects were investigated with MRI and with histological analysis performed 3 hours to 1 week after sonication. RESULTS Thirteen targets were sonicated in regions next to the optic tract in the 4 animals. Inertial cavitation, indicated by broadband acoustic emissions, occurred at acoustic pressure amplitudes ranging from 340 to 540 kPa. MRI analysis suggested that the lesions had a central region containing red blood cell extravasations that was surrounded by edema. Blood-brain barrier disruption was observed on contrast-enhanced MRI in the lesions and in a surrounding region corresponding to the prefocal area of the FUS system. In histology, lesions consisting of tissue undergoing ischemic necrosis were found in all regions that were sonicated above the inertial cavitation threshold. Tissue damage in prefocal areas was found in several cases, suggesting that in

  6. Model of THz Magnetization Dynamics

    PubMed Central

    Bocklage, Lars

    2016-01-01

    Magnetization dynamics can be coherently controlled by THz laser excitation, which can be applied in ultrafast magnetization control and switching. Here, transient magnetization dynamics are calculated for excitation with THz magnetic field pulses. We use the ansatz of Smit and Beljers, to formulate dynamic properties of the magnetization via partial derivatives of the samples free energy density, and extend it to solve the Landau-Lifshitz-equation to obtain the THz transients of the magnetization. The model is used to determine the magnetization response to ultrafast multi- and single-cycle THz pulses. Control of the magnetization trajectory by utilizing the THz pulse shape and polarization is demonstrated. PMID:26956997

  7. Laser ablation inductively coupled plasma dynamic reaction cell mass spectrometry for the multi-element analysis of polymers

    NASA Astrophysics Data System (ADS)

    Resano, M.; García-Ruiz, E.; Vanhaecke, F.

    2005-11-01

    In this work, the potential of laser ablation-inductively coupled plasma-mass spectrometry for the fast analysis of polymers has been explored. Different real-life samples (polyethylene shopping bags, an acrylonitrile butadiene styrene material and various plastic bricks) as well as several reference materials (VDA 001 to 004, Cd in polyethylene) have been selected for the study. Two polyethylene reference materials (ERM-EC 680 and 681), for which a reference or indicative value for the most relevant metals is available, have proved their suitability as standards for calibration. Special attention has been paid to the difficulties expected for the determination of Cr at the μg g - 1 level in this kind of materials, due to the interference of ArC + ions on the most abundant isotopes of Cr. The use of ammonia as a reaction gas in a dynamic reaction cell is shown to alleviate this problem, resulting in a limit of detection of 0.15 μg g - 1 for this element, while limiting only modestly the possibilities of the technique for simultaneous multi-element analysis. In this regard, As is the analyte most seriously affected by the use of ammonia, and its determination has to be carried out in vented mode, at the expense of measuring time. In all cases studied, accurate results could be obtained for elements ranging in content from the sub-μg g - 1 level to tens of thousands of μg g - 1 . However, the use of an element of known concentration as internal standard may be needed for materials with a matrix significantly different from that of the standard (polyethylene in this work). Precision ranged between 5% and 10% RSD for elements found at the 10 μg g - 1 level or higher, while this value could deteriorate to 20% for analytes found at the sub-μg g - 1 level. Overall, the technique evaluated presents many advantages for the fast and accurate multi-element analysis of these materials, avoiding laborious digestion procedures and minimizing the risk of analyte losses due

  8. Investigation of plume dynamics during picosecond laser ablation of H13 steel using high-speed digital holography

    NASA Astrophysics Data System (ADS)

    Pangovski, Krste; Otanocha, Omonigho B.; Zhong, Shan; Sparkes, Martin; Liu, Zhu; O'Neill, William; Li, Lin

    2017-02-01

    Ablation of H13 tool steel using pulse packets with repetition rates of 400 and 1000 kHz and pulse energies of 75 and 44 μ {J}, respectively, is investigated. A drop in ablation efficiency (defined here as the depth per pulse or μ {m}{/}μ {J}) is shown to occur when using pulse energies of E_{{pulse}} > 44 μ {J}, accompanied by a marked difference in crater morphology. A pulsed digital holographic system is applied to image the resulting plumes, showing a persistent plume in both cases. Holographic data are used to calculate the plume absorption and subsequently the fraction of pulse energy arriving at the surface after traversing the plume for different pulse arrival times. A significant proportion of the pulse energy is shown to be absorbed in the plume for E_{{pulse}} > 44 μ {J} for pulse arrival times corresponding to {>}1 MHz pulse repetition rate, shifting the interaction to a vapour-dominated ablation regime, an energetically costlier ablation mechanism.

  9. Modelling of sensitivity of plasmon sensory elements based on silver nanoparticles obtained by laser evaporation and ablation

    NASA Astrophysics Data System (ADS)

    Egorov, V. I.; Sidorov, A. I.

    2016-07-01

    A comparison of the sensitivity of the spectral position of plasmon resonance calculated by numerical methods to a change in the refractive index of the environment for ellipsoidal and spherical silver nanoparticles with a dielectric shell synthesized by laser ablation has been performed. It has been shown that sensitivity is higher for nanoparticles with the shape of a prolate ellipsoid than for spherical nanoparticles. The modeling has shown that the optimal thickness of the dielectric shell should be 10-12 nm and its refractive index should be 1.6. With this, a sensitivity of the plasmon sensor of 32 nm/RIU (RIU is refractive index unit) may be provided.

  10. Endoscopic Ultrasound-Guided Radiofrequency Ablation (EUS-RFA) of the Pancreas in a Porcine Model

    PubMed Central

    Gaidhane, Monica; Smith, Ioana; Ellen, Kristi; Gatesman, Jeremy; Habib, Nagy; Foley, Patricia; Moskaluk, Christopher; Kahaleh, Michel

    2012-01-01

    Backgrounds. Limited effective palliative treatments exist for pancreatic cancer which includes surgery or chemotherapy. Radiofrequency ablation (RFA) uses high frequency alternating current to ablate diseased tissue and has been used to treat various tumors. In this study, we evaluated a prototype probe adjusted to the EUS-needle to perform EUS-RFA to permit coagulative necrosis in the pancreas. Methods. Five Yucatan pigs underwent EUS-guided radiofrequency ablation of the head of their pancreas. Using an EUS-needle, RFA was applied with 6 mm and then 10 mm of the probe exposed at specific wattage for preset durations. Results. Only one pig showed moderate levels of pancreatitis (20% proximal pancreatitis). The other animals showed much lower areas of tissue damage. In 3 of the 5 pigs, the proximal pancreas showed greater levels of tissue injury than the distal pancreas, consistent with the proximity of the tissue to the procedure site. In 1 pig, both proximal and distal pancreas showed minimal pancreatitis (1%). There was minimal evidence of fat necrosis in intra-pancreatic and/or extra-pancreatic adipose tissue. Conclusion. EUS-guided RFA of the pancreatic head with the monopolar probe through a 19-gauge needle was well tolerated in 5 Yucatan pigs and with minimal amount of pancreatitis. PMID:23049547

  11. The Annual Glaciohydrology Cycle in the Ablation Zone of the Greenland Ice Sheet: Part 1. Hydrology Model

    NASA Technical Reports Server (NTRS)

    Colgan, William; Rajaram, Harihar; Anderson, Robert; Steffen. Konrad; Phillips, Thomas; Zwally, H. Jay; Abdalati, Waleed

    2012-01-01

    We apply a novel one-dimensional glacier hydrology model that calculates hydraulic head to the tidewater-terminating Sermeq Avannarleq flowline of the Greenland ice sheet. Within a plausible parameter space, the model achieves a quasi-steady-state annual cycle in which hydraulic head oscillates close to flotation throughout the ablation zone. Flotation is briefly achieved during the summer melt season along a approx.17 km stretch of the approx.50 km of flowline within the ablation zone. Beneath the majority of the flowline, subglacial conduit storage closes (i.e. obtains minimum radius) during the winter and opens (i.e. obtains maximum radius) during the summer. Along certain stretches of the flowline, the model predicts that subglacial conduit storage remains open throughout the year. A calculated mean glacier water residence time of approx.2.2 years implies that significant amounts of water are stored in the glacier throughout the year. We interpret this residence time as being indicative of the timescale over which the glacier hydrologic system is capable of adjusting to external surface meltwater forcings. Based on in situ ice velocity observations, we suggest that the summer speed-up event generally corresponds to conditions of increasing hydraulic head during inefficient subglacial drainage. Conversely, the slowdown during fall generally corresponds to conditions of decreasing hydraulic head during efficient subglacial drainage.

  12. Global/Local Dynamic Models

    SciTech Connect

    Pfeffer, A; Das, S; Lawless, D; Ng, B

    2006-10-10

    Many dynamic systems involve a number of entities that are largely independent of each other but interact with each other via a subset of state variables. We present global/local dynamic models (GLDMs) to capture these kinds of systems. In a GLDM, the state of an entity is decomposed into a globally influenced state that depends on other entities, and a locally influenced state that depends only on the entity itself. We present an inference algorithm for GLDMs called global/local particle filtering, that introduces the principle of reasoning globally about global dynamics and locally about local dynamics. We have applied GLDMs to an asymmetric urban warfare environment, in which enemy units form teams to attack important targets, and the task is to detect such teams as they form. Experimental results for this application show that global/local particle filtering outperforms ordinary particle filtering and factored particle filtering.

  13. Generative Models of Conformational Dynamics

    PubMed Central

    Langmead, Christopher James

    2014-01-01

    Atomistic simulations of the conformational dynamics of proteins can be performed using either Molecular Dynamics or Monte Carlo procedures. The ensembles of three-dimensional structures produced during simulation can be analyzed in a number of ways to elucidate the thermodynamic and kinetic properties of the system. The goal of this chapter is to review both traditional and emerging methods for learning generative models from atomistic simulation data. Here, the term ‘generative’ refers to a model of the joint probability distribution over the behaviors of the constituent atoms. In the context of molecular modeling, generative models reveal the correlation structure between the atoms, and may be used to predict how the system will respond to structural perturbations. We begin by discussing traditional methods, which produce multivariate Gaussian models. We then discuss GAMELAN (GrAphical Models of Energy LANdscapes), which produces generative models of complex, non-Gaussian conformational dynamics (e.g., allostery, binding, folding, etc) from long timescale simulation data. PMID:24446358

  14. Characterization of tracked radiofrequency ablation in phantom

    SciTech Connect

    Chen, Chun-Cheng R.; Miga, Michael I.; Galloway, Robert L.

    2007-10-15

    In radiofrequency ablation (RFA), successful therapy requires accurate, image-guided placement of the ablation device in a location selected by a predictive treatment plan. Current planning methods rely on geometric models of ablations that are not sensitive to underlying physical processes in RFA. Implementing plans based on computational models of RFA with image-guided techniques, however, has not been well characterized. To study the use of computational models of RFA in planning needle placement, this work compared ablations performed with an optically tracked RFA device with corresponding models of the ablations. The calibration of the tracked device allowed the positions of distal features of the device, particularly the tips of the needle electrodes, to be determined to within 1.4{+-}0.6 mm of uncertainty. Ablations were then performed using the tracked device in a phantom system based on an agarose-albumin mixture. Images of the sliced phantom obtained from the ablation experiments were then compared with the predictions of a bioheat transfer model of RFA, which used the positional data of the tracked device obtained during ablation. The model was demonstrated to predict 90% of imaged pixels classified as being ablated. The discrepancies between model predictions and observations were analyzed and attributed to needle tracking inaccuracy as well as to uncertainties in model parameters. The results suggest the feasibility of using finite element modeling to plan ablations with predictable outcomes when implemented using tracked RFA.

  15. The dynamics of coastal models

    USGS Publications Warehouse

    Hearn, Clifford J.

    2008-01-01

    Coastal basins are defined as estuaries, lagoons, and embayments. This book deals with the science of coastal basins using simple models, many of which are presented in either analytical form or Microsoft Excel or MATLAB. The book introduces simple hydrodynamics and its applications, from the use of simple box and one-dimensional models to flow over coral reefs. The book also emphasizes models as a scientific tool in our understanding of coasts, and introduces the value of the most modern flexible mesh combined wave-current models. Examples from shallow basins around the world illustrate the wonders of the scientific method and the power of simple dynamics. This book is ideal for use as an advanced textbook for graduate students and as an introduction to the topic for researchers, especially those from other fields of science needing a basic understanding of the basic ideas of the dynamics of coastal basins.

  16. Predictive models of battle dynamics

    NASA Astrophysics Data System (ADS)

    Jelinek, Jan

    2001-09-01

    The application of control and game theories to improve battle planning and execution requires models, which allow military strategists and commanders to reliably predict the expected outcomes of various alternatives over a long horizon into the future. We have developed probabilistic battle dynamics models, whose building blocks in the form of Markov chains are derived from the first principles, and applied them successfully in the design of the Model Predictive Task Commander package. This paper introduces basic concepts of our modeling approach and explains the probability distributions needed to compute the transition probabilities of the Markov chains.

  17. Observability in dynamic evolutionary models.

    PubMed

    López, I; Gámez, M; Carreño, R

    2004-02-01

    In the paper observability problems are considered in basic dynamic evolutionary models for sexual and asexual populations. Observability means that from the (partial) knowledge of certain phenotypic characteristics the whole evolutionary process can be uniquely recovered. Sufficient conditions are given to guarantee observability for both sexual and asexual populations near an evolutionarily stable state.

  18. Image-based multi-scale modelling and validation of radio-frequency ablation in liver tumours.

    PubMed

    Payne, Stephen; Flanagan, Ronan; Pollari, Mika; Alhonnoro, Tuomas; Bost, Claire; O'Neill, David; Peng, Tingying; Stiegler, Philipp

    2011-11-13

    The treatment of cancerous tumours in the liver remains clinically challenging, despite the wide range of treatment possibilities, including radio-frequency ablation (RFA), high-intensity focused ultrasound and resection, which are currently available. Each has its own advantages and disadvantages. For non- or minimally invasive modalities, such as RFA, considered here, it is difficult to monitor the treatment in vivo. This is particularly problematic in the liver, where large blood vessels act as heat sinks, dissipating delivered heat and shrinking the size of the lesion (the volume damaged by the heat treatment) locally; considerable experience is needed on the part of the clinician to optimize the heat treatment to prevent recurrence. In this paper, we outline our work towards developing a simulation tool kit that could be used both to optimize treatment protocols in advance and to train the less-experienced clinicians for RFA treatment of liver tumours. This tool is based on a comprehensive mathematical model of bio-heat transfer and cell death. We show how simulations of ablations in two pigs, based on individualized imaging data, compare directly with experimentally measured lesion sizes and discuss the likely sources of error and routes towards clinical implementation. This is the first time that such a 'loop' of mathematical modelling and experimental validation in vivo has been performed in this context, and such validation enables us to make quantitative estimates of error.

  19. Analytical validation of COMSOL Multiphysics for theoretical models of Radiofrequency ablation including the Hyperbolic Bioheat transfer equation.

    PubMed

    Rivera, Maria J; López Molina, Juan A; Trujillo, Macarena; Romero-Garcia, Vicente; Berjano, Enrique J

    2010-01-01

    In this paper we outline our main findings about the differences between the use of the Bioheat Equation and the Hyperbolic Bioheat Equation in theoretical models for Radiofrequency (RF) ablation. At the moment, we have been working on the analytical approach to solve both equations, but more recently, we have considered numerical models based on the Finite Element Method (FEM). As a first step to use FEM, we conducted a comparative study between the temperature profiles obtained from the analytical solutions and those obtained from FEM. Regarding the differences between both methods, we obtain agreement in less than 5% of relative differences. Then FEM is a good alternative to model heating of biological tissues using BE and HBE in, for example, more complex and realistic geometries.

  20. Pulsed laser ablation of complex oxides: The role of congruent ablation and preferential scattering for the film stoichiometry

    SciTech Connect

    Wicklein, S.; Koehl, A.; Dittmann, R.; Sambri, A.; Amoruso, S.; Wang, X.; Bruzzese, R.

    2012-09-24

    By combining structural and chemical thin film analysis with detailed plume diagnostics and modeling of the laser plume dynamics, we are able to elucidate the different physical mechanisms determining the stoichiometry of the complex oxides model material SrTiO{sub 3} during pulsed laser deposition. Deviations between thin film and target stoichiometry are basically a result of two effects, namely, incongruent ablation and preferential scattering of lighter ablated species during their motion towards the substrate in the O{sub 2} background gas. On the one hand, a progressive preferential ablation of the Ti species with increasing laser fluence leads to a regime of Ti-rich thin film growth at larger fluences. On the other hand, in the low laser fluence regime, a more effective scattering of the lighter Ti plume species results in Sr rich films.

  1. Quantifying Post- Laser Ablation Prostate Therapy Changes on MRI via a Domain-Specific Biomechanical Model: Preliminary Findings

    PubMed Central

    Toth, Robert; Sperling, Dan; Madabhushi, Anant

    2016-01-01

    Focal laser ablation destroys cancerous cells via thermal destruction of tissue by a laser. Heat is absorbed, causing thermal necrosis of the target region. It combines the aggressive benefits of radiation treatment (destroying cancer cells) without the harmful side effects (due to its precise localization). MRI is typically used pre-treatment to determine the targeted area, and post-treatment to determine efficacy by detecting necrotic tissue, or tumor recurrence. However, no system exists to quantitatively evaluate the post-treatment effects on the morphology and structure via MRI. To quantify these changes, the pre- and post-treatment MR images must first be spatially aligned. The goal is to quantify (a) laser-induced shape-based changes, and (b) changes in MRI parameters post-treatment. The shape-based changes may be correlated with treatment efficacy, and the quantitative effects of laser treatment over time is currently poorly understood. This work attempts to model changes in gland morphology following laser treatment due to (1) patient alignment, (2) changes due to surrounding organs such as the bladder and rectum, and (3) changes due to the treatment itself. To isolate the treatment-induced shape-based changes, the changes from (1) and (2) are first modeled and removed using a finite element model (FEM). A FEM models the physical properties of tissue. The use of a physical biomechanical model is important since a stated goal of this work is to determine the physical shape-based changes to the prostate from the treatment, and therefore only physical real deformations are to be allowed. A second FEM is then used to isolate the physical, shape-based, treatment-induced changes. We applied and evaluated our model in capturing the laser induced changes to the prostate morphology on eight patients with 3.0 Tesla, T2-weighted MRI, acquired approximately six months following treatment. Our results suggest the laser treatment causes a decrease in prostate volume

  2. A simple model for a shock wave in a dynamic hohlraum

    NASA Astrophysics Data System (ADS)

    Xu, Qiang; Zhou, Shao-tong; Ren, Xiao-dong; Wang, Kun-lun; Huang, Xian-bin

    2017-02-01

    The dynamic hohlraum (DH) is an approach to Inertial Confinement Fusion, and its X-ray radiation can be widely used in high energy density physics. The shock wave in dynamic hohlraum is important because it heats the foam to high radiation temperatures. Here, we proposed a simple model to describe the shock wave in the dynamic hohlraum. Based on the Rocket ablation model, this simple shock model connects the wire-array implosion phase and the shock formation phase. We also use the experimental result of dynamic hohlraum with a heavy foam mass acquired on primary test stand to verify this model. This simple shock model helps researchers to estimate when and where the collision happens so that researchers could understand the physics in DH more clearly.

  3. Dynamical Modelling of Meteoroid Streams

    NASA Astrophysics Data System (ADS)

    Clark, David; Wiegert, P. A.

    2012-10-01

    Accurate simulations of meteoroid streams permit the prediction of stream interaction with Earth, and provide a measure of risk to Earth satellites and interplanetary spacecraft. Current cometary ejecta and meteoroid stream models have been somewhat successful in predicting some stream observations, but have required questionable assumptions and significant simplifications. Extending on the approach of Vaubaillon et al. (2005)1, we model dust ejection from the cometary nucleus, and generate sample particles representing bins of distinct dynamical evolution-regulating characteristics (size, density, direction, albedo). Ephemerides of the sample particles are integrated and recorded for later assignment of frequency based on model parameter changes. To assist in model analysis we are developing interactive software to permit the “turning of knobs” of model parameters, allowing for near-real-time 3D visualization of resulting stream structure. With this tool, we will revisit prior assumptions made, and will observe the impact of introducing non-uniform cometary surface attributes and temporal activity. The software uses a single model definition and implementation throughout model verification, sample particle bin generation and integration, and analysis. It supports the adjustment with feedback of both independent and independent model values, with the intent of providing an interface supporting multivariate analysis. Propagations of measurement uncertainties and model parameter precisions are tracked rigorously throughout. We maintain a separation of the model itself from the abstract concepts of model definition, parameter manipulation, and real-time analysis and visualization. Therefore we are able to quickly adapt to fundamental model changes. It is hoped the tool will also be of use in other solar system dynamics problems. 1 Vaubaillon, J.; Colas, F.; Jorda, L. (2005) A new method to predict meteor showers. I. Description of the model. Astronomy and

  4. Dynamic Model of Mesoscale Eddies

    NASA Astrophysics Data System (ADS)

    Dubovikov, Mikhail S.

    2003-04-01

    Oceanic mesoscale eddies which are analogs of well known synoptic eddies (cyclones and anticyclones), are studied on the basis of the turbulence model originated by Dubovikov (Dubovikov, M.S., "Dynamical model of turbulent eddies", Int. J. Mod. Phys.B7, 4631-4645 (1993).) and further developed by Canuto and Dubovikov (Canuto, V.M. and Dubovikov, M.S., "A dynamical model for turbulence: I. General formalism", Phys. Fluids8, 571-586 (1996a) (CD96a); Canuto, V.M. and Dubovikov, M.S., "A dynamical model for turbulence: II. Sheardriven flows", Phys. Fluids8, 587-598 (1996b) (CD96b); Canuto, V.M., Dubovikov, M.S., Cheng, Y. and Dienstfrey, A., "A dynamical model for turbulence: III. Numerical results", Phys. Fluids8, 599-613 (1996c)(CD96c); Canuto, V.M., Dubovikov, M.S. and Dienstfrey, A., "A dynamical model for turbulence: IV. Buoyancy-driven flows", Phys. Fluids9, 2118-2131 (1997a) (CD97a); Canuto, V.M. and Dubovikov, M.S., "A dynamical model for turbulence: V. The effect of rotation", Phys. Fluids9, 2132-2140 (1997b) (CD97b); Canuto, V.M., Dubovikov, M.S. and Wielaard, D.J., "A dynamical model for turbulence: VI. Two dimensional turbulence", Phys. Fluids9, 2141-2147 (1997c) (CD97c); Canuto, V.M. and Dubovikov, M.S., "Physical regimes and dimensional structure of rotating turbulence", Phys. Rev. Lett. 78, 666-669 (1997d) (CD97d); Canuto, V.M., Dubovikov, M.S. and Dienstfrey, A., "Turbulent convection in a spectral model", Phys. Rev. Lett. 78, 662-665 (1997e) (CD97e); Canuto, V.M. and Dubovikov, M.S., "A new approach to turbulence", Int. J. Mod. Phys.12, 3121-3152 (1997f) (CD97f); Canuto, V.M. and Dubovikov, M.S., "Two scaling regimes for rotating Raleigh-Benard convection", Phys. Rev. Letters78, 281-284, (1998) (CD98); Canuto, V.M. and Dubovikov, M.S., "A dynamical model for turbulence: VII. The five invariants for shear driven flows", Phys. Fluids11, 659-664 (1999a) (CD99a); Canuto, V.M., Dubovikov, M.S. and Yu, G., "A dynamical model for turbulence: VIII. IR and UV

  5. Ablation of sensory neurons in a genetic model of pancreatic ductal adenocarcinoma slows initiation and progression of cancer.

    PubMed

    Saloman, Jami L; Albers, Kathryn M; Li, Dongjun; Hartman, Douglas J; Crawford, Howard C; Muha, Emily A; Rhim, Andrew D; Davis, Brian M

    2016-03-15

    Pancreatic ductal adenocarcinoma (PDAC) is characterized by an exuberant inflammatory desmoplastic response. The PDAC microenvironment is complex, containing both pro- and antitumorigenic elements, and remains to be fully characterized. Here, we show that sensory neurons, an under-studied cohort of the pancreas tumor stroma, play a significant role in the initiation and progression of the early stages of PDAC. Using a well-established autochthonous model of PDAC (PKC), we show that inflammation and neuronal damage in the peripheral and central nervous system (CNS) occurs as early as the pancreatic intraepithelial neoplasia (PanIN) 2 stage. Also at the PanIN2 stage, pancreas acinar-derived cells frequently invade along sensory neurons into the spinal cord and migrate caudally to the lower thoracic and upper lumbar regions. Sensory neuron ablation by neonatal capsaicin injection prevented perineural invasion (PNI), astrocyte activation, and neuronal damage, suggesting that sensory neurons convey inflammatory signals from Kras-induced pancreatic neoplasia to the CNS. Neuron ablation in PKC mice also significantly delayed PanIN formation and ultimately prolonged survival compared with vehicle-treated controls (median survival, 7.8 vs. 4.5 mo; P = 0.001). These data establish a reciprocal signaling loop between the pancreas and nervous system, including the CNS, that supports inflammation associated with oncogenic Kras-induced neoplasia. Thus, pancreatic sensory neurons comprise an important stromal cell population that supports the initiation and progression of PDAC and may represent a potential target for prevention in high-risk populations.

  6. Coupling centrifuge modeling and laser ablation inductively coupled plasma mass spectrometry to determine contaminant retardation in clays.

    PubMed

    Timms, Wendy; Hendry, M Jim; Muise, Jason; Kerrich, Robert

    2009-02-15

    Quantifying the retardation (Rd) of reactive solutes as they migrate through low-permeability clay-rich media is difficult, thus motivating this study to assess the viability of combining centrifuge modeling and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) techniques. An influent solution containing Cl-, trace metals, and lanthanide species flowed at 1.0 mL x h(-1) through an undisturbed clay-rich core sample (33 mm diameter x 50 mm long) mounted in a UFA Beckman centrifuge operating at 3000 rpm (N factor = 876 g). During the 87 day experiment the hydraulic conductivity of the core was 3.4 x 10(-10) m x s(-1). Effluent breakthrough data indicate the Rd of Tl to be 10; incomplete breakthrough (non-steady-state) data for 145Nd and 171Yb suggest Rd values of >75 and >85, respectively. At the completion of the transport experiment, longitudinal sections of the core solid were analyzed for 145Nd and 171Yb using a Cetac laser ablation system coupled with an ICP-MS. The longitudinal core sections yielded Rd values of >10000 for 145Nd and 171Yb. This study demonstrates coupling these techniques can provide Rd values for a wide range of reactive solutes with relatively rapid testing of small-scale, low hydraulic conductivity core samples.

  7. Thermal Convection on an Ablating Target

    NASA Astrophysics Data System (ADS)

    Mehmedagic, Igbal; Thangam, Siva

    2015-11-01

    Modeling and analysis of thermal convection of a metallic targets subject to radiative flux is of relevance to various manufacturing processes as well as for the development of protective shields. The present work involves the computational modeling of metallic targets subject to high heat fluxes that are both steady and pulsed. Modeling of the ablation and associated fluid dynamics when metallic surfaces are exposed to high intensity pulsed laser fluence at normal atmospheric conditions is considered. The incident energy from the laser is partly absorbed and partly reflected by the surface during ablation and subsequent vaporization of the convecting melt also participates in the radiative exchange. The energy distribution during the process between the bulk and vapor phase strongly depends on optical and thermodynamic properties of the irradiated material, radiation wavelength, and laser pulse intensity and duration. Computational findings based on effective representation and prediction of the heat transfer, melting and vaporization of the targeting material as well as plume formation and expansion are presented and discussed in the context of various ablation mechanisms, variable thermo-physical and optical properties, plume expansion and surface geometry. Funded in part by U. S. Army ARDEC, Picatinny Arsenal, NJ.

  8. Dynamical modelling of meteoroid streams

    NASA Astrophysics Data System (ADS)

    Clark, D. L.; Wiegert, P. A.

    2014-07-01

    Accurate simulations of meteoroid streams permit the prediction of stream interaction with Earth, and provide a measure of risk to Earth satellites and interplanetary spacecraft. Current cometary ejecta and meteoroid stream models have been somewhat successful in predicting some stream observations, but have required significant assumptions and simplifications. Extending on the approach of Vaubaillon et al. 2005, we model dust ejection from the cometary nucleus, and generate sample particles representing bins of distinct dynamical evolution-regulating characteristics (size, density, direction, albedo). Ephemerides of the sample particles are integrated and recorded for later assignment of weights based on model parameter changes. To assist in model analysis we are developing interactive software to permit the "turning of knobs" of model parameters, allowing for near-real-time 3D visualization of resulting stream structure. Using the tool, we will revisit prior assumptions made, and will observe the impact of introducing non-uniform and time-variant cometary surface attributes and processes.

  9. Percutaneous transapical access for pulmonary vein mapping and ablation in a porcine model with a new high-density electroanatomical mapping system

    PubMed Central

    Bollmann, Andreas; Kosiuk, Jedrzej; Hilbert, Sebastian; John, Silke; Hindricks, Gerhard

    2015-01-01

    Introduction: The porcine model is generally accepted for the development and testing of new forms oftherapy including ablation of atrial fibrillation (AF). However, the challenging left atrial (LA) and pulmonary vein (PV) anatomy enables only limited percutaneous catheter-based PV access. Results: Here we present I) an alternative percutaneous transapical access, which enables easy and safe retrograde transmitral LA and PV mapping and ablation; II) early experience of LA mapping and successful circumferential PV isolation with novel mapping system (RhythmiaTM) and new generation of ablation catheter equipped with micro electrodes (IntellaTip MiFi). Conclusion: Although the experience with the transapical approach is limited, the initial results are promising as this may offer an alternative approach for tasting new technologies and translational research. PMID:26550175

  10. Hydra modeling of the effect of nearly complete inflight ice and ablator mix in a NIF implosion on several key diagnostics

    NASA Astrophysics Data System (ADS)

    Kritcher, Andrea; Sepke, Scott; Scott, Howard; Regan, Sean; Masse, Laurent; Raman, Kumar; Grim, Gary; Cerjan, Charlie; Marinak, Marty; Spears, Brian; Meezan, Nathan; Suter, Larry

    2012-10-01

    A programmed mix model is used with the radiation hydrodynamics code HYDRA to explore the effects of nearly complete inflight mixing of the ice and ablator on NIC implosion performance and diagnostic signatures. In NIC DT implosions, nearly complete mix of the DT ice and ablator can be envisioned via cold jets of material penetrating the ice possibly combined with turbulence at the fuel-ablator interface. The quantitative impact of this scenario on several key NIF diagnostics, including yield, ion temperature, downscattered neutron spectrum, neutron imaging, Ge and Cu atomic emission analysis, gated x-ray imaging, and streaked x-ray radiography will be discussed. This work performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344. LLNL-ABS-564191.

  11. Cell- and developmental stage-specific Dicer1 ablation in the lung epithelium models cystic pleuropulmonary blastoma.

    PubMed

    Wagh, Purnima K; Gardner, Margaret A; Ma, Xiaolan; Callahan, Melissa; Shannon, John M; Wert, Susan E; Messinger, Yoav H; Dehner, Louis P; Hill, D Ashley; Wikenheiser-Brokamp, Kathryn A

    2015-05-01

    Inherited syndromes provide unique opportunities to identify key regulatory mechanisms governing human disease. We previously identified germline loss-of-function DICER1 mutations in a human syndrome defined by the childhood lung neoplasm pleuropulmonary blastoma (PPB), which arises during lung development. DICER1 regulates many biological processes critical in development and disease pathogenesis. Significant challenges in defining the role of DICER1 in human disease are identifying cause-effect relationships and generating manipulatable systems that model the complexity of organ development and disease pathogenesis. Here we report the generation of a murine model for PPB and demonstrate that precise temporal and cell type-specific Dicer1 ablation is necessary and sufficient for the development of cystic lungs that histologically and phenotypically model PPB. Dicer1 ablation in the distal airway epithelium during early stages of lung development resulted in a cystic lung phenotype indistinguishable from PPB, whereas DICER1 function was not required for development of the proximal airway epithelium or during later stages of organogenesis. Mechanistic studies demonstrate that Dicer1 loss results in epithelial cell death, followed by cystic airway dilatation accompanied by epithelial and mesenchymal proliferation. These studies define precise temporal and epithelial cell type-specific DICER1 functions in the developing lung and demonstrate that loss of these DICER1 functions is sufficient for the development of cystic PPB. These results also provide evidence that PPB arise through a novel mechanism of non-cell-autonomous tumour initiation, in which the genetic abnormality initiating the neoplasm does not occur in the cells that ultimately transform, but rather occurs in a benign-appearing epithelial cell component that predisposes underlying mesenchymal cells to malignant transformation.

  12. Towards a Dynamic DES model

    NASA Astrophysics Data System (ADS)

    Subbareddy, Pramod; Candler, Graham

    2009-11-01

    Hybrid RANS/LES methods are being increasingly used for turbulent flow simulations in complex geometries. Spalart's detached eddy simulation (DES) model is one of the more popular ones. We are interested in examining the behavior of the Spalart-Allmaras (S-A) Detached Eddy Simulation (DES) model in its ``LES mode.'' The role of the near-wall functions present in the equations is analyzed and an explicit analogy between the S-A and a one-equation LES model based on the sub-grid kinetic energy is presented. A dynamic version of the S-A DES model is proposed based on this connection. Validation studies and results from DES and LES applications will be presented and the effect of the proposed modification will be discussed.

  13. Conditional ablation of TGF-β signaling inhibits tumor progression and invasion in an induced mouse bladder cancer model

    PubMed Central

    Liang, Yu; Zhu, Fengyu; Zhang, Haojie; Chen, Demeng; Zhang, Xiuhong; Gao, Qian; Li, Yang

    2016-01-01

    The role of transforming growth factor-β (TGF-β) signaling in cancer progression is still under debate. To determine the function of TGF-β signaling in bladder cancer progression, we conditionally knocked out the Tgfbr2 in mouse model after a N-butyl-N-4-hydroxybutyl Nitrosamine induced bladder carcinogenesis. We found the ablation of TGF-β signaling could inhibit the cancer cell proliferation, cancer stem cell population and EMT, hence suppressed the invasive cancer progression, which is similar with the result of TGF-β receptor I inhibitor treatment. These findings recognize the roles and mechanisms of TGF-β signaling in bladder cancer progression in vivo for the first time. PMID:27378170

  14. Effects of non-ablative fractional erbium glass laser treatment on gene regulation in human three-dimensional skin models.

    PubMed

    Amann, Philipp M; Marquardt, Yvonne; Steiner, Timm; Hölzle, Frank; Skazik-Voogt, Claudia; Heise, Ruth; Baron, Jens M

    2016-04-01

    Clinical experiences with non-ablative fractional erbium glass laser therapy have demonstrated promising results for dermal remodelling and for the indications of striae, surgical scars and acne scars. So far, molecular effects on human skin following treatment with these laser systems have not been elucidated. Our aim was to investigate laser-induced effects on skin morphology and to analyse molecular effects on gene regulation. Therefore, human three-dimensional (3D) organotypic skin models were irradiated with non-ablative fractional erbium glass laser systems enabling qRT-PCR, microarray and histological studies at same and different time points. A decreased mRNA expression of matrix metalloproteinases (MMPs) 3 and 9 was observed 3 days after treatment. MMP3 also remained downregulated on protein level, whereas the expression of other MMPs like MMP9 was recovered or even upregulated 5 days after irradiation. Inflammatory gene regulatory responses measured by the expression of chemokine (C-X-C motif) ligands (CXCL1, 2, 5, 6) and interleukin expression (IL8) were predominantly reduced. Epidermal differentiation markers such as loricrin, filaggrin-1 and filaggrin-2 were upregulated by both tested laser optics, indicating a potential epidermal involvement. These effects were also shown on protein level in the immunofluorescence analysis. This novel standardised laser-treated human 3D skin model proves useful for monitoring time-dependent ex vivo effects of various laser systems on gene expression and human skin morphology. Our study reveals erbium glass laser-induced regulations of MMP and interleukin expression. We speculate that these alterations on gene expression level could play a role for dermal remodelling, anti-inflammatory effects and increased epidermal differentiation. Our finding may have implications for further understanding of the molecular mechanism of erbium glass laser-induced effects on human skin.

  15. Modeling Catastrophic Barrier Island Dynamics

    NASA Astrophysics Data System (ADS)

    Whitley, J. W.; McNamara, D.

    2012-12-01

    Barrier islands, thin strips of sand lying parallel to the mainland coastline, along the U.S. Atlantic and Gulf Coasts appear to have maintained their form for thousands of years in the face of rising sea level. The mechanisms that allow barrier islands to remain robust are transport of sediment from the ocean side of barriers to the top and backside during storms, termed island overwash, and the growth and alongshore propagation of tidal deltas near barrier island inlets. Dynamically these processes provide the necessary feedbacks to maintain a barrier island in an attractor that withstands rising sea level within a phase space of barrier island geometrical characteristics. Current barrier island configurations along the Atlantic and Gulf coasts exist among a wide range of storm climate and underlying geologic conditions and therefore the environment that forces overwash and tidal delta dynamics varies considerably. It has been suggested that barrier islands in certain locations such as those between Avon and Buxton (losing 76% of island width since 1852) and Chandeleur islands (losing 85% of its surface area since 2005) along the Atlantic and Gulf coasts, respectively, may be subject to a catastrophic shift in barrier island attractor states - more numerous inlets cutting barriers in some locations and the complete disappearance of barrier islands in other locations. In contrast to common models for barrier islands that neglect storm dynamics and often only consider cross-shore response, we use an alongshore extended model for barrier island dynamics including beach erosion, island overwash and inlet cutting during storms, and beach accretion, tidal delta growth and dune and vegetation growth between storms to explore the response of barrier islands to a wide range of environmental forcing. Results will be presented that show how barrier island attractor states are altered with variations in the rate of sea level rise, storminess, and underlying geology. We will

  16. Data modeling of network dynamics

    NASA Astrophysics Data System (ADS)

    Jaenisch, Holger M.; Handley, James W.; Faucheux, Jeffery P.; Harris, Brad

    2004-01-01

    This paper highlights Data Modeling theory and its use for text data mining as a graphical network search engine. Data Modeling is then used to create a real-time filter capable of monitoring network traffic down to the port level for unusual dynamics and changes in business as usual. This is accomplished in an unsupervised fashion without a priori knowledge of abnormal characteristics. Two novel methods for converting streaming binary data into a form amenable to graphics based search and change detection are introduced. These techniques are then successfully applied to 1999 KDD Cup network attack data log-on sessions to demonstrate that Data Modeling can detect attacks without prior training on any form of attack behavior. Finally, two new methods for data encryption using these ideas are proposed.

  17. Mathematical Modeling of Wildfire Dynamics

    NASA Astrophysics Data System (ADS)

    Del Bene, Kevin; Drew, Donald

    2012-11-01

    Wildfires have been a long-standing problem in today's society. In this paper, we derive and solve a fluid dynamics model to study a specific type of wildfire, namely, a two dimensional flow around a rising plume above a concentrated heat source, modeling a fire line. This flow assumes a narrow plume of hot gas rising and entraining the surrounding air. The surrounding air is assumed to have constant density and is irrotational far from the fire line. The flow outside the plume is described by a Biot-Savart integral with jump conditions across the position of the plume. The plume model describes the unsteady evolution of the mass, momentum, energy, and vorticity inside the plume, with sources derived to model mixing in the style of Morton, et al. 1956]. The fire is then modeled using a conservation derivation, allowing the fire to propagate, coupling back to the plume model. The results show that this model is capable of capturing the complex interaction of the plume with the surrounding air and fuel layer. Funded by NSF GRFP.

  18. Modeling the Dynamics of Snags.

    PubMed

    Morrison, Michael L; Raphael, Martin G

    1993-05-01

    Many wildlife species required standing dead trees (i.e., snags) as part of their habitat. Therefore, the ability to predict future density, distribution, and condition of snags can assist resource managers in making land-use decisions. Here we present methods for modeling the dynamics of snags using data from a 10-yr study on the rates of decay, falling, and recruitment of snags on burned and unburned plots in the Sierra Nevada, California. Snags (all species) in advanced stages of decay usually fell within 5 yr, and snags created by fire decayed rapidly and fell quicker (within 10 yr) than those on unburned plots. Pine (Pinus spp.) snags decayed more rapidly than fir (Abies spp.). Although there was an overall net increase in snag density on unburned plots, most of this increase was in the smaller (>13-38 cm diameter at breast height [dbh]) size classes; there was a net decrease in the larger (>38 cm dbh) snags preferred by many birds for nesting and feeding. Overall, snags remained standing the longest that were larger in diameter, shorter in height, less decayed, fir rather than pine, and lacking tops. A Leslie matrix model of snag dynamics predicted changes in snag decay and density only when adjusted for the specific environmental factors(s) causing initial tree mortality. Many snags are created by episodic events, such as fire, disease, drought, and insects. Models of snag dynamics must include the species and condition of trees becoming snags, as well as the factor(s) causing the tree to die. Forest managers must consider this episodic creation of snags when developing snag-management guidelines, and when planning tree-salvage programs based on short-term inventories.

  19. Bayesian Estimation of Categorical Dynamic Factor Models

    ERIC Educational Resources Information Center

    Zhang, Zhiyong; Nesselroade, John R.

    2007-01-01

    Dynamic factor models have been used to analyze continuous time series behavioral data. We extend 2 main dynamic factor model variations--the direct autoregressive factor score (DAFS) model and the white noise factor score (WNFS) model--to categorical DAFS and WNFS models in the framework of the underlying variable method and illustrate them with…

  20. Ablation of the microglial protein DOCK2 reduces amyloid burden in a mouse model of Alzheimer's disease.

    PubMed

    Cimino, Patrick J; Yang, Yue; Li, Xianwu; Hemingway, Jake F; Cherne, Makenzie K; Khademi, Shawn B; Fukui, Yoshinori; Montine, Kathleen S; Montine, Thomas J; Keene, C Dirk

    2013-04-01

    Alzheimer's disease (AD) neuropathology is characterized by innate immune activation primarily through prostaglandin E2 (PGE2) signaling. Dedicator of cytokinesis 2 (DOCK2) is a guanyl nucleotide exchange factor expressed exclusively in microglia in the brain and is regulated by PGE2 receptor EP2. DOCK2 modulates microglia cytokine secretion, phagocytosis, and paracrine neurotoxicity. EP2 ablation in experimental AD results in reduced oxidative damage and amyloid beta (Aβ) burden. This discovery led us to hypothesize that genetic ablation of DOCK2 would replicate the anti-Aβ effects of loss of EP2 in experimental AD. To test this hypothesis, we crossed mice that lacked DOCK2 (DOCK2-/-), were hemizygous for DOCK2 (DOCK2+/-), or that expressed two DOCK2 genes (DOCK2+/+) with APPswe-PS1Δe9 mice (a model of AD). While we found no DOCK2-dependent differences in cortex or in hippocampal microglia density or morphology in APPswe-PS1Δe9 mice, cerebral cortical and hippocampal Aβ plaque area and size were significantly reduced in 10-month-old APPswe-PS1Δe9/DOCK2-/- mice compared with APPswe-PS1Δe9/DOCK2+/+ controls. DOCK2 hemizygous APPswe-PS1Δe9 mice had intermediate Aβ plaque levels. Interestingly, soluble Aβ42 was not significantly different among the three genotypes, suggesting the effects were mediated specifically in fibrillar Aβ. In combination with earlier cell culture results, our in vivo results presented here suggest DOCK2 contributes to Aβ plaque burden via regulation of microglial innate immune function and may represent a novel therapeutic target for AD.

  1. Ablation of sensory neurons in a genetic model of pancreatic ductal adenocarcinoma slows initiation and progression of cancer

    PubMed Central

    Saloman, Jami L.; Albers, Kathryn M.; Li, Dongjun; Hartman, Douglas J.; Crawford, Howard C.; Muha, Emily A.; Rhim, Andrew D.; Davis, Brian M.

    2016-01-01

    Pancreatic ductal adenocarcinoma (PDAC) is characterized by an exuberant inflammatory desmoplastic response. The PDAC microenvironment is complex, containing both pro- and antitumorigenic elements, and remains to be fully characterized. Here, we show that sensory neurons, an under-studied cohort of the pancreas tumor stroma, play a significant role in the initiation and progression of the early stages of PDAC. Using a well-established autochthonous model of PDAC (PKC), we show that inflammation and neuronal damage in the peripheral and central nervous system (CNS) occurs as early as the pancreatic intraepithelial neoplasia (PanIN) 2 stage. Also at the PanIN2 stage, pancreas acinar-derived cells frequently invade along sensory neurons into the spinal cord and migrate caudally to the lower thoracic and upper lumbar regions. Sensory neuron ablation by neonatal capsaicin injection prevented perineural invasion (PNI), astrocyte activation, and neuronal damage, suggesting that sensory neurons convey inflammatory signals from Kras-induced pancreatic neoplasia to the CNS. Neuron ablation in PKC mice also significantly delayed PanIN formation and ultimately prolonged survival compared with vehicle-treated controls (median survival, 7.8 vs. 4.5 mo; P = 0.001). These data establish a reciprocal signaling loop between the pancreas and nervous system, including the CNS, that supports inflammation associated with oncogenic Kras-induced neoplasia. Thus, pancreatic sensory neurons comprise an important stromal cell population that supports the initiation and progression of PDAC and may represent a potential target for prevention in high-risk populations. PMID:26929329

  2. Endovenous laser ablation (EVLA): a review of mechanisms, modeling outcomes, and issues for debate.

    PubMed

    Malskat, Wendy S J; Poluektova, Anna A; van der Geld, Cees W M; Neumann, H A Martino; Weiss, Robert A; Bruijninckx, Cornelis M A; van Gemert, Martin J C

    2014-03-01

    Endovenous laser ablation (EVLA) is a commonly used and very effective minimally invasive therapy to manage leg varicosities. Yet, and despite a clinical history of 16 years, no international consensus on a best treatment protocol has been reached so far. Evidence presented in this paper supports the opinion that insufficient knowledge of the underlying physics amongst frequent users could explain this shortcoming. In this review, we will examine the possible modes of action of EVLA, hoping that better understanding of EVLA-related physics stimulates critical appraisal of claims made concerning the efficacy of EVLA devices, and may advance identifying a best possible treatment protocol. Finally, physical arguments are presented to debate on long-standing, but often unfounded, clinical opinions and habits. This includes issues such as (1) the importance of laser power versus the lack of clinical relevance of laser energy (Joule) as used in Joule per centimeter vein length, i.e., in linear endovenous energy density (LEED), and Joule per square centimeter vein wall area, (2) the predicted effectiveness of a higher power and faster pullback velocity, (3) the irrelevance of whether laser light is absorbed by hemoglobin or water, and (4) the effectiveness of reducing the vein diameter during EVLA therapy.

  3. Salivary Biomarkers Associated with Myocardial Necrosis: Results from an Alcohol Septal Ablation Model

    PubMed Central

    Foley, Joseph D.; Sneed, J. Darrell; Steinhubl, Steven R.; Kolasa, Justin R.; Ebersole, Jeffrey L.; Lin, Yushun; Kryscio, Richard J.; McDevitt, John T.; Campbell, Charles L.; Miller, Craig S.

    2013-01-01

    Objective To determine if salivary biomarkers demonstrate utility for identifying aspects of myocardial necrosis. Methods Twenty-one patients undergoing alcohol septal ablation (ASA) for treatment of hypertrophic cardiomyopathy provided serum and unstimulated whole saliva at baseline and incremental time points post-ASA. Samples were analyzed for seven biomarkers related to myocardial damage, inflammation and tissue remodeling using immunosorbent assays. Levels were compared to baseline and levels observed in 97 healthy controls. Results Biomarkers of myocardial damage and inflammation (i.e., troponin I, creatine kinase-MB, myoglobin, C-reactive protein) rose in serum 2 to 812-fold after ASA (p<0.01). Significant elevations of 2 to 3.5-fold were observed with C-reactive protein and troponin I in saliva (p<0.02). Significant correlations between levels in serum and saliva were observed for C-reactive protein, matrix metalloproteinase-9, and myeloperoxidase (p < 0.001). Conclusions Select salivary biomarkers reflect changes that occur during, and subsequent to, myocardial necrosis caused by ASA. PMID:23021916

  4. Computer modeling of electromagnetic and thermal effects in microwave soft tissue ablation (Invited Paper)

    NASA Astrophysics Data System (ADS)

    Cronin, Nigel J.; Clegg, Peter J.

    2005-04-01

    Microwave Endometrial Ablation (MEA) is a technique that can be used for the treatment of abnormal uterine bleeding. The procedure involves sweeping a specially designed microwave applicator throughout the uterine cavity to achieve an ideally uniform depth of tissue necrosis of between 5 and 6mm. We have performed a computer analysis of the MEA procedure in which finite element analysis was used to determine the SAR pattern around the applicator. This was followed by a Green Function based solution of the Bioheat equation to determine the resulting induced temperatures. The method developed is applicable to situations involving a moving microwave source, as used in MEA. The validity of the simulation was verified by measurements in a tissue phantom material using a purpose built applicator and a calibrated pulling device. From the calculated temperatures the depth of necrosis was assessed through integration of the resulting rates of cell death estimated using the Arrhenius equation. The Arrhenius parameters used were derived from published data on BHK cells. Good agreement was seen between the calculated depths of cell necrosis and those found in human in-vivo testing.

  5. Characterizing and modeling citation dynamics.

    PubMed

    Eom, Young-Ho; Fortunato, Santo

    2011-01-01

    Citation distributions are crucial for the analysis and modeling of the activity of scientists. We investigated bibliometric data of papers published in journals of the American Physical Society, searching for the type of function which best describes the observed citation distributions. We used the goodness of fit with Kolmogorov-Smirnov statistics for three classes of functions: log-normal, simple power law and shifted power law. The shifted power law turns out to be the most reliable hypothesis for all citation networks we derived, which correspond to different time spans. We find that citation dynamics is characterized by bursts, usually occurring within a few years since publication of a paper, and the burst size spans several orders of magnitude. We also investigated the microscopic mechanisms for the evolution of citation networks, by proposing a linear preferential attachment with time dependent initial attractiveness. The model successfully reproduces the empirical citation distributions and accounts for the presence of citation bursts as well.

  6. Characterizing and Modeling Citation Dynamics

    PubMed Central

    Eom, Young-Ho; Fortunato, Santo

    2011-01-01

    Citation distributions are crucial for the analysis and modeling of the activity of scientists. We investigated bibliometric data of papers published in journals of the American Physical Society, searching for the type of function which best describes the observed citation distributions. We used the goodness of fit with Kolmogorov-Smirnov statistics for three classes of functions: log-normal, simple power law and shifted power law. The shifted power law turns out to be the most reliable hypothesis for all citation networks we derived, which correspond to different time spans. We find that citation dynamics is characterized by bursts, usually occurring within a few years since publication of a paper, and the burst size spans several orders of magnitude. We also investigated the microscopic mechanisms for the evolution of citation networks, by proposing a linear preferential attachment with time dependent initial attractiveness. The model successfully reproduces the empirical citation distributions and accounts for the presence of citation bursts as well. PMID:21966387

  7. Dynamical model for competing opinions

    NASA Astrophysics Data System (ADS)

    Souza, S. R.; Gonçalves, S.

    2012-05-01

    We propose an opinion model based on agents located at the vertices of a regular lattice. Each agent has an independent opinion (among an arbitrary, but fixed, number of choices) and its own degree of conviction. The latter changes every time two agents which have different opinions interact with each other. The dynamics leads to size distributions of clusters (made up of agents which have the same opinion and are located at contiguous spatial positions) which follow a power law, as long as the range of the interaction between the agents is not too short; i.e., the system self-organizes into a critical state. Short range interactions lead to an exponential cutoff in the size distribution and to spatial correlations which cause agents which have the same opinion to be closely grouped. When the diversity of opinions is restricted to two, a nonconsensus dynamic is observed, with unequal population fractions, whereas consensus is reached if the agents are also allowed to interact with those located far from them. The individual agents' convictions, the preestablished interaction range, and the locality of the interaction between a pair of agents (their neighborhood has no effect on the interaction) are the main characteristics which distinguish our model from previous ones.

  8. Inflight Properties of NIF Ignition Capsules Inferred from Convergent Ablator Experiments

    NASA Astrophysics Data System (ADS)

    Meezan, Nathan

    2012-10-01

    Convergent ablator (ConA) experiments on the National Ignition Facility (NIF) are indirect drive implosions that study the inflight dynamics of an imploding capsule. Side-on, back-lit radiography provides data used by the National Ignition Campaign to infer time-dependent properties of the capsule ablator, including its center of mass radius, velocity, unablated mass, shell thickness, and peak density. Previously, CallahanfootnotetextD. A. Callahan et al., Phys. Plasmas 19, 056305 (2012) and Hicks reported ConA experiments demonstrating velocities approaching those required for ignition. Here, we present the findings from a full year of NIF ConA experiments where we have shot more than 20 targets at energies greater than 1 MJ to study the inflight dynamics of ignition-like implosions. These include: *Studies of ablator center of mass motion vs. time, suggesting that the drive history differs substantially from that predicted by standard modeling *Pulse shape scalings studying the dynamics of a ``fifth shock'' that can significantly increase the entropy of the DT fuel in an ignition implosion. *Performance of different ablators, including CH ablators with graded Si doping, CH ablators with uniform Si doping, and other ablators. *ConA experiments using capsules with cryogenic ice layers, demonstrating that gas-filled capsules are adequate surrogates for DT layered implosions. *Studies of thicker capsules shot at powers and energies surpassing 500 TW and 1.8 MJ as we work to meet the ignition implosion velocity requirement in the presence of hydrodynamic instabilities. Finally, we describe insights into hydrodynamic instabilities that we have gained through this large database, from variations in capsule performance (neutron yield and Tion) as well as from the impact of mix on observed late-time ablator properties.

  9. Radiative ablation of disks around massive stars

    NASA Astrophysics Data System (ADS)

    Kee, Nathaniel Dylan

    Hot, massive stars (spectral types O and B) have extreme luminosities (10. 4 -10. 6 L?) that drive strong stellar winds through UV line-scattering.Some massive stars also have disks, formed by either decretion from the star (as in the rapidly rotating "Classical Be stars"), or accretion during the star's formation. This dissertation examines the role of stellar radiation in driving (ablating) material away from these circumstellar disks. A key result is that the observed month to year decay of Classical Be disks can be explained by line-driven ablation without, as previously done, appealing to anomalously strong viscous diffusion. Moreover, the higher luminosity of O stars leads to ablation of optically thin disks on dynamical timescales of order a day, providing a natural explanation for the lack of observed Oe stars. In addition to the destruction of Be disks, this dissertation also introduces a model for their formation by coupling observationally inferred non-radial pulsation modes and rapid stellar rotation to launch material into orbiting Keplerian disks of Be-like densities. In contrast to such Be decretion disks, star-forming accretion disks are much denser and so are generally optically thick to continuum processes. To circumvent the computational challenges associated with radiation hydrodynamics through optically thick media, we develop an approximate method for treating continuum absorption in the limit of geometrically thin disks. The comparison of ablation with and without continuum absorption shows that accounting for disk optical thickness leads to less than a 50% reduction in ablation rate, implying that ablation rate depends mainly on stellar properties like luminosity. Finally, we discuss the role of "thin-shell mixing" in reducing X-rays from colliding wind binaries. Laminar, adiabatic shocks produce well understood X-ray emission, but the emission from radiatively cooled shocks is more complex due to thin-shell instabilities. The parameter

  10. Fast and automatic depth control of iterative bone ablation based on optical coherence tomography data

    NASA Astrophysics Data System (ADS)

    Fuchs, Alexander; Pengel, Steffen; Bergmeier, Jan; Kahrs, Lüder A.; Ortmaier, Tobias

    2015-07-01

    Laser surgery is an established clinical procedure in dental applications, soft tissue ablation, and ophthalmology. The presented experimental set-up for closed-loop control of laser bone ablation addresses a feedback system and enables safe ablation towards anatomical structures that usually would have high risk of damage. This study is based on combined working volumes of optical coherence tomography (OCT) and Er:YAG cutting laser. High level of automation in fast image data processing and tissue treatment enables reproducible results and shortens the time in the operating room. For registration of the two coordinate systems a cross-like incision is ablated with the Er:YAG laser and segmented with OCT in three distances. The resulting Er:YAG coordinate system is reconstructed. A parameter list defines multiple sets of laser parameters including discrete and specific ablation rates as ablation model. The control algorithm uses this model to plan corrective laser paths for each set of laser parameters and dynamically adapts the distance of the laser focus. With this iterative control cycle consisting of image processing, path planning, ablation, and moistening of tissue the target geometry and desired depth are approximated until no further corrective laser paths can be set. The achieved depth stays within the tolerances of the parameter set with the smallest ablation rate. Specimen trials with fresh porcine bone have been conducted to prove the functionality of the developed concept. Flat bottom surfaces and sharp edges of the outline without visual signs of thermal damage verify the feasibility of automated, OCT controlled laser bone ablation with minimal process time.

  11. Dynamical model of surrogate reactions

    SciTech Connect

    Aritomo, Y.; Chiba, S.; Nishio, K.

    2011-08-15

    A new dynamical model is developed to describe the whole process of surrogate reactions: Transfer of several nucleons at an initial stage, thermal equilibration of residues leading to washing out of shell effects, and decay of populated compound nuclei are treated in a unified framework. Multidimensional Langevin equations are employed to describe time evolution of collective coordinates with a time-dependent potential energy surface corresponding to different stages of surrogate reactions. The new model is capable of calculating spin distributions of the compound nuclei, one of the most important quantities in the surrogate technique. Furthermore, various observables of surrogate reactions can be calculated, for example, energy and angular distribution of ejectile and mass distributions of fission fragments. These features are important to assess validity of the proposed model itself, to understand mechanisms of the surrogate reactions, and to determine unknown parameters of the model. It is found that spin distributions of compound nuclei produced in {sup 18}O+{sup 238}U{yields}{sup 16}O+{sup 240}*U and {sup 18}O+{sup 236}U{yields}{sup 16}O+{sup 238}*U reactions are equivalent and much less than 10({h_bar}/2{pi}) and therefore satisfy conditions proposed by Chiba and Iwamoto [Phys. Rev. C 81, 044604 (2010)] if they are used as a pair in the surrogate ratio method.

  12. Dynamical Modeling of Mars' Paleoclimate

    NASA Technical Reports Server (NTRS)

    Richardson, Mark I.

    2004-01-01

    This report summarizes work undertaken under a one-year grant from the NASA Mars Fundamental Research Program. The goal of the project was to initiate studies of the response of the Martian climate to changes in planetary obliquity and orbital elements. This work was undertaken with a three-dimensional numerical climate model based on the Geophysical Fluid Dynamics Laboratory (GFDL) Skyhi General Circulation Model (GCM). The Mars GCM code was adapted to simulate various obliquity and orbital parameter states. Using a version of the model with a basic water cycle (ice caps, vapor, and clouds), we examined changes in atmospheric water abundances and in the distribution of water ice sheets on the surface. This work resulted in a paper published in the Journal of Geophysical Research - Planets. In addition, the project saw the initial incorporation of a regolith water transport and storage scheme into the model. This scheme allows for interaction between water in the pores of the near subsurface (<3m) and the atmosphere. This work was not complete by the end of the one-year grant, but is now continuing within the auspices of a three-year grant of the same title awarded by the Mars Fundamental Research Program in late 2003.

  13. Modeling sandhill crane population dynamics

    USGS Publications Warehouse

    Johnson, D.H.

    1979-01-01

    The impact of sport hunting on the Central Flyway population of sandhill cranes (Grus canadensis) has been a subject of controversy for several years. A recent study (Buller 1979) presented new and important information on sandhill crane population dynamics. The present report is intended to incorporate that and other information into a mathematical model for the purpose of assessing the long-range impact of hunting on the population of sandhill cranes.The model is a simple deterministic system that embodies density-dependent rates of survival and recruitment. The model employs four kinds of data: (1) spring population size of sandhill cranes, estimated from aerial surveys to be between 250,000 and 400,000 birds; (2) age composition in fall, estimated for 1974-76 to be 11.3% young; (3) annual harvest of cranes, estimated from a variety of sources to be about 5 to 7% of the spring population; and (4) age composition of harvested cranes, which was difficult to estimate but suggests that immatures were 2 to 4 times as vulnerable to hunting as adults.Because the true nature of sandhill crane population dynamics remains so poorly understood, it was necessary to try numerous (768 in all) combinations of survival and recruitment functions, and focus on the relatively few (37) that yielded population sizes and age structures comparable to those extant in the real population. Hunting was then applied to those simulated populations. In all combinations, hunting resulted in a lower asymptotic crane population, the decline ranging from 5 to 54%. The median decline was 22%, which suggests that a hunted sandhill crane population might be about three-fourths as large as it would be if left unhunted. Results apply to the aggregate of the three subspecies in the Central Flyway; individual subspecies or populations could be affected to a greater or lesser degree.

  14. Fragmentation and ablation during entry

    SciTech Connect

    Canavan, G.H.

    1997-09-01

    This note discusses objects that both fragment and ablate during entry, using the results of previous reports to describe the velocity, pressure, and fragmentation of entering objects. It shows that the mechanisms used there to describe the breakup of non-ablating objects during deceleration remain valid for most ablating objects. It treats coupled fragmentation and ablation during entry, building on earlier models that separately discuss the entry of objects that are hard, whose high heat of ablation permits little erosion, and those who are strong whose strength prevents fragmentation, which are discussed in ``Radiation from Hard Objects,`` ``Deceleration and Radiation of Strong, Hard, Asteroids During Atmospheric Impact,`` and ``Meteor Signature Interpretation.`` This note provides a more detailed treatment of the further breakup and separation of fragments during descent. It replaces the constraint on mass per unit area used earlier to determine the altitude and magnitude of peak power radiation with a detailed analytic solution of deceleration. Model predictions are shown to be in agreement with the key features of numerical calculations of deceleration. The model equations are solved for the altitudes of maximum radiation, which agree with numerical integrations. The model is inverted analytically to infer object size and speed from measurements of peak power and altitude to provide a complete model for the approximate inversion of meteor data.

  15. Computational Modeling of Open-Irrigated Electrodes for Radiofrequency Cardiac Ablation Including Blood Motion-Saline Flow Interaction

    PubMed Central

    González-Suárez, Ana; Berjano, Enrique; Guerra, Jose M.; Gerardo-Giorda, Luca

    2016-01-01

    Radiofrequency catheter ablation (RFCA) is a routine treatment for cardiac arrhythmias. During RFCA, the electrode-tissue interface temperature should be kept below 80°C to avoid thrombus formation. Open-irrigated electrodes facilitate power delivery while keeping low temperatures around the catheter. No computational model of an open-irrigated electrode in endocardial RFCA accounting for both the saline irrigation flow and the blood motion in the cardiac chamber has been proposed yet. We present the first computational model including both effects at once. The model has been validated against existing experimental results. Computational results showed that the surface lesion width and blood temperature are affected by both the electrode design and the irrigation flow rate. Smaller surface lesion widths and blood temperatures are obtained with higher irrigation flow rate, while the lesion depth is not affected by changing the irrigation flow rate. Larger lesions are obtained with increasing power and the electrode-tissue contact. Also, larger lesions are obtained when electrode is placed horizontally. Overall, the computational findings are in close agreement with previous experimental results providing an excellent tool for future catheter research. PMID:26938638

  16. SSME structural dynamic model development

    NASA Technical Reports Server (NTRS)

    Foley, Michael J.

    1989-01-01

    The high pressure fuel turbopump (HPFTP) is a major component of the Space Shuttle Main Engine (SSME) powerhead. The device is a three stage centrifugal pump that is directly driven by a two stage hot gas turbine. The purpose of the pump is to deliver fuel (liquid hydrogen) from the low pressure fuel turbopump (LPFTP) through the main fuel valve (MFV) to the thrust chamber coolant circuits. In doing so, the pump pressurizes the fuel from an inlet pressure of approximately 178 psi to a discharge pressure of over 6000 psi. At full power level (FPL), the pump rotates at a speed of over 37,000 rpm while generating approximately 77,000 horsepower. Obviously, a pump failure at these speeds and power levels could jeopardize the mission. Results are summarized for work in which the solutions obtained from analytical models of the fuel turbopump impellers are compared with the results obtained from dynamic tests.

  17. Effect of ambient gas pressure on pulsed laser ablation plume dynamics and ZnTe film growth

    SciTech Connect

    Rouleau, C.M.; Lowndes, D.H.; Geohegan, D.B.; Allard, L.F.; Strauss, M.A.; Cao, S.; Pedraza, A.J.; Puretzky, A.A.

    1995-12-01

    Epitaxial thin films of nitrogen-doped p-ZnTe were grown on single-crystal, semi-insulating Ga-As substrates via pulsed laser ablation of a stoichiometric ZnTe target. Both low pressure nitrogen ambients and high vacuum were used. Results of in situ reflection high energy electron diffraction (RHEED) and time-resolved ion probe measurements have been compared with ex situ Hall effect and transmission electron microscopy (TEM) measurements. A strong correlation was observed between the nature of the film`s surface during growth (2-D vs. 3-D, assessed via RHEED) and the ambient gas pressures employed during deposition. The extended defect content (assessed via cross-sectional TEM) in the region >150 mn from the film/substrate interface was found to increase with the ambient gas pressure during deposition, which could not be explained by lattice mismatch alone. At sufficiently high pressures, misoriented, columnar grains developed which were not only consistent with the RHEED observations but also were correlated with a marked decrease in Hall mobility and a slight decrease in hole concentration. Ion probe measurements, which monitored the attenuation and slowing of the ion current arriving at the substrate surface, indicated that for increasing nitrogen pressure the fast (vacuum) velocity distribution splits into a distinct fast and two collisionally-slowed components or modes. Gas controlled variations in these components mirrored trends in electrical properties and microstructural measurements.

  18. Validating equation of state models in the ablative Richtmyer-Meshkov regime for indirect-drive inertial confinement fusion capsules

    NASA Astrophysics Data System (ADS)

    Loomis, Eric; Braun, Dave; Batha, Steve; Sorce, Charles; Landen, Otto

    2011-10-01

    Recent simulations have shown that isolated features on the outer surface of Inertial Confinement Fusion (ICF) ignition capsules can profoundly impact capsule performance by leading to mixing in the hotspot. Controlling the growth of these artifacts is complicated due to uncertainties in equation of state (EOS) models used in simulation codes. Here we report on measurements pertaining to the growth of isolated defects due to ablative Richtmyer-Meshkov in CH capsules in order to validate these models. Face-on transmission radiography was used to measure the evolution of Gaussian bump arrays in plastic targets. Au halfraums heated to radiation temperatures near 70 eV using 15 beams in a 5 ns pulse from the Omega laser (Laboratory for Laser Energetics, University of Rochester, NY) indirectly drove the samples. Shock speed measurements made with Omega's Active Shock BreakOut (ASBO) diagnostic in conjunction with the x-ray flux recorded by a soft x-ray power diagnostic (DANTE) were used to determine drive conditions in the target. These measurements show that SESAME 7592 is in closer agreement with shock speed and bump growth data compared to LEOS 5310.

  19. Genetic ablation of luteinizing hormone receptor improves the amyloid pathology in a mouse model of Alzheimer disease.

    PubMed

    Lin, Jing; Li, Xian; Yuan, Fangping; Lin, Ling; Cook, Christine L; Rao, Ch V; Lei, Zhenmin

    2010-03-01

    Amyloid-beta peptide (Abeta) plays an essential pathophysiologic role in Alzheimer disease, and elevation of luteinizing hormone (LH) levels during aging has been implicated in its pathogenesis. To assess the effect of LH receptor deficiency on Abeta accumulation, we generated a bigenic mouse model, APPsw(+)/Lhr(-/-), which expresses human amyloid precursor protein (APPsw) in the background of LH receptor (Lhr) knockout. Genetic ablation of Lhr resulted in a significant decrease in the number of Abeta plaques and protein content in the hippocampus and cerebral cortex in both male and female mice. Accordingly, several Abeta deposition-related neuropathologic features and functionally relevant molecules were markedly improved, including decreased astrogliosis, reductions of elevated phosphorylated tau, c-fos, alpha7-nicotinic acetylcholine receptor, and restoration of the altered neuropeptide Y receptors Y1 and Y2. Diminution of Abeta accumulation in the absence of LH receptor supports the contention that dysregulation of LH may impact the pathogenesis of Alzheimer disease. The APPsw(+)/Lhr(-/-) mouse may be a useful tool for advancing understanding of the role of LH-mediated events in Alzheimer disease and a model in which to test therapeutic interventions.

  20. Fibre optic sensors for temperature and pressure monitoring in laser ablation: experiments on ex-vivo animal model

    NASA Astrophysics Data System (ADS)

    Tosi, Daniele; Saccomandi, Paola; Schena, Emiliano; Duraibabu, Dinesh B.; Poeggel, Sven; Adilzhan, Abzal; Aliakhmet, Kamilla; Silvestri, Sergio; Leen, Gabriel; Lewis, Elfed

    2016-05-01

    Optical fibre sensors have been applied to perform biophysical measurement in ex-vivo laser ablation (LA), on pancreas animal phantom. Experiments have been performed using Fibre Bragg Grating (FBG) arrays for spatially resolved temperature detection, and an all-glass Extrinsic Fabry-Perot Interferometer (EFPI) for pressure measurement. Results using a Nd:YAG laser source as ablation device, are presented and discussed.

  1. Radiofrequency Ablation of Liver Tumors

    MedlinePlus

    ... Site Index A-Z Radiofrequency Ablation (RFA) of Liver Tumors Radiofrequency ablation (RFA) is a treatment that ... of Liver Tumors? What is Radiofrequency Ablation of Liver Tumors? Radiofrequency ablation, sometimes referred to as RFA, ...

  2. Modeling of the Laser-Induced Thermal Response, Ablation, and Fragmentation of Biological Tissue

    DTIC Science & Technology

    1988-04-27

    Most of our effo" .s thus far have been focused on the "hard" tissue problem, i.e., kidney stones, gallstones , calcified plaque. IDuring this first... gallstones , (3) modeling of laser-driven shock-induced fragmentation of kidney stones and gallstones , and (4) modeling of the above surface hydrodynamics, i.e... gallstones (Section 3); (3) modeling of aser-driven shock-induced fragmentation of kidney stones and gallstones (Section 4); and (4) modeling of the above

  3. Multiple stimulations for muscle-nerve-blood vessel unit in compensatory hypertrophied skeletal muscle of rat surgical ablation model.

    PubMed

    Tamaki, Tetsuro; Uchiyama, Yoshiyasu; Okada, Yoshinori; Tono, Kayoko; Nitta, Masahiro; Hoshi, Akio; Akatsuka, Akira

    2009-07-01

    Tissue inflammation and multiple cellular responses in the compensatory enlarged plantaris (OP Plt) muscle induced by surgical ablation of synergistic muscles (soleus and gastrocnemius) were followed over 10 weeks after surgery. Contralateral surgery was performed in adult Wistar male rats. Cellular responses in muscle fibers, blood vessels and nerve fibers were analyzed by immunohistochemistry and electron microscopy. Severe muscle fiber damage and disappearance of capillaries associated with apparent tissue edema were observed in the peripheral portion of OP Plt muscles during the first week, whereas central portions were relatively preserved. Marked cell activation/proliferation was also mainly observed in peripheral portions. Similarly, activated myogenic cells were seen not only inside but also outside of muscle fibers. The former were likely satellite cells and the latter may be interstitial myogenic cells. One week after surgery, small muscle fibers, small arteries and capillaries and several branched-muscle fibers were evident in the periphery, thus indicating new muscle fiber and blood vessel formation. Proliferating cells were also detected in the nerve bundles in the Schwann cell position. These results indicate that the compensatory stimulated/enlarged muscle is a suitable model for analyzing multiple physiological cellular responses in muscle-nerve-blood vessel units under continuous stretch stimulation.

  4. Ablative skin resurfacing.

    PubMed

    Chwalek, Jennifer; Goldberg, David J

    2011-01-01

    Ablative skin resurfacing has remained the gold standard for treating photodamage and acne scars since the development of the first CO(2) lasers. CO(2) and Er:YAG lasers emit infrared light, which targets water resulting in tissue contraction and collagen formation. The first ablative laser systems created significant thermal damage resulting in unacceptably high rates of scarring and prolonged healing. Newer devices, such as high-energy pulsed lasers and fractional ablative lasers, are capable of achieving significant improvements with fewer side effects and shorter recovery times. While ablative resurfacing has become safer, careful patient selection is still important to avoid post-treatment scarring, dyspigmentation, and infections. Clinicians utilizing ablative devices need to be aware of possible side effects in order to maximize results and patient satisfaction. This chapter reviews the background of ablative lasers including the types of ablative lasers, mechanism of action, indications for ablative resurfacing, and possible side effects.

  5. Ablation modeling of electro-magnetically launched projectile for access to space

    NASA Astrophysics Data System (ADS)

    Gosse, Ryan C.

    It has been proposed to study and identify the technical issues involved in the launch to space of micro-satellite payloads using an airborne electromagnetic launcher (AEML). A computational fluid dynamics (CFD) computer code was developed to help characterize the aerothermal issues involved with the flight of the projectile as it exits the Earth's atmosphere. Conceptual geometries were chosen to evaluate the feasibility of launching to orbit from an aircraft. Due to expected high heating fluxes, carboncarbon material was selected for the thermal protection system (TPS). Results of the conceptual study are presented and used to evaluate the practicality of the AEML concept.

  6. Thermal Response Simulation of Ultra Light Weight Phenolic Carbon Ablator by the Use of the Ablation Analysis Code

    NASA Astrophysics Data System (ADS)

    Kato, Sumio; Okuyama, Keiichi; Gibo, Kenta; Miyagi, Takuma; Suzuki, Toshiyuki; Fujita, Kazuhisa; Sakai, Takeharu; Nishio, Seiji; Watanabe, Akihiro

    A space vehicle which undergoes the atmospheric re-entry or a planetary entry needs the heat shield system to protect inner equipments against severe aerodynamic heating environments. Charring ablator is usually used for the heat shield system. In order to design the heat shield system, it is necessary to predict the thermal behavior under aerodynamic heating by ablation analysis. A computer code for charring ablation and thermal response analysis is newly developed for simulation of one-dimensional transient thermal behavior of charring ablation materials. The mathematical model for the charring ablation including basic equation and computational method of ablation analysis is briefly described. A new ultra light weight phenolic carbon ablator called LATS (Lightweight Ablator series for Transfer vehicle) was recently developed. Arc-heated tests of the LATS ablator were carried out and measured results of the temperature response and surface mass loss are compared with the simulation results of the ablation analysis program. The agreement between the results of simulation and measurement is found to be good. It is also found that the mathematical model used in the ablation code can be applied to the ablation analysis of the low density LATS ablator.

  7. Preliminary shuttle structural dynamics modeling design study

    NASA Technical Reports Server (NTRS)

    1972-01-01

    The design and development of a structural dynamics model of the space shuttle are discussed. The model provides for early study of structural dynamics problems, permits evaluation of the accuracy of the structural and hydroelastic analysis methods used on test vehicles, and provides for efficiently evaluating potential cost savings in structural dynamic testing techniques. The discussion is developed around the modes in which major input forces and responses occur and the significant structural details in these modes.

  8. Comparative dynamics in a health investment model.

    PubMed

    Eisenring, C

    1999-10-01

    The method of comparative dynamics fully exploits the inter-temporal structure of optimal control models. I derive comparative dynamic results in a simplified demand for health model. The effect of a change in the depreciation rate on the optimal paths for health capital and investment in health is studied by use of a phase diagram.

  9. The Challenges to Coupling Dynamic Geospatial Models

    SciTech Connect

    Goldstein, N

    2006-06-23

    Many applications of modeling spatial dynamic systems focus on a single system and a single process, ignoring the geographic and systemic context of the processes being modeled. A solution to this problem is the coupled modeling of spatial dynamic systems. Coupled modeling is challenging for both technical reasons, as well as conceptual reasons. This paper explores the benefits and challenges to coupling or linking spatial dynamic models, from loose coupling, where information transfer between models is done by hand, to tight coupling, where two (or more) models are merged as one. To illustrate the challenges, a coupled model of Urbanization and Wildfire Risk is presented. This model, called Vesta, was applied to the Santa Barbara, California region (using real geospatial data), where Urbanization and Wildfires occur and recur, respectively. The preliminary results of the model coupling illustrate that coupled modeling can lead to insight into the consequences of processes acting on their own.

  10. Enhanced coupling of optical energy during liquid-confined metal ablation

    SciTech Connect

    Kang, Hyun Wook; Welch, Ashley J.

    2015-10-21

    Liquid-confined laser ablation was investigated with various metals of indium, aluminum, and nickel. Ablation threshold and rate were characterized in terms of surface deformation, transient acoustic responses, and plasma emissions. The surface condition affected the degree of ablation dynamics due to variations in reflectance. The liquid confinement yielded up to an order of larger ablation crater along with stronger acoustic transients than dry ablation. Enhanced ablation performance resulted possibly from effective coupling of optical energy at the interface during explosive vaporization, plasma confinement, and cavitation. The deposition of a liquid layer can induce more efficient ablation for laser metal processing.

  11. Early snowmelt decreases ablation period carbon uptake in a high elevation, subalpine forest, Niwot Ridge, Colorado, USA

    NASA Astrophysics Data System (ADS)

    Winchell, T. S.; Molotch, N. P.; Barnard, D. M.

    2015-12-01

    The snow ablation period is a time of great potential for carbon uptake in high-elevation, subalpine forests. During this period, water availability associated with snowmelt promotes photosynthetic carbon uptake, while snow cover diminishes carbon losses from soil respiration. Although the ablation period can be as short as two weeks, as much as 30% of the total seasonal carbon uptake can occur during this period. Varying ablation period dynamics, however, can result in varying rates of carbon uptake during this integral uptake period. We use fifteen years of observational climate flux and snow water equivalent (SWE) data for a subalpine forest in the Colorado Rocky Mountains to analyze carbon uptake trends during the annual ablation period. Specifically, we focus on how the timing of peak SWE affects carbon uptake during the ablation period. We find that when the snowmelt period occurs one month earlier than average, the forest experiences an ablation period mean air temperature of 2.7° C, approximately 5° C colder than an ablation period that occurs one month later than average. This early, colder atmospheric condition leads to daytime carbon uptake rates that are 2.5 gC/m2/day less than the later, warmer period, which results in 47 gC/m2 less ablation period carbon uptake. As most climate models project peak SWE to occur earlier under various warming scenarios, we can expect to see a trend of less carbon uptake during future ablation periods. We expect to see a decrease in total growing season carbon uptake if the post-snowmelt period is unable to compensate for the decrease in ablation period carbon uptake.

  12. Hydration dynamics near a model protein surface

    SciTech Connect

    Russo, Daniela; Hura, Greg; Head-Gordon, Teresa

    2003-09-01

    The evolution of water dynamics from dilute to very high concentration solutions of a prototypical hydrophobic amino acid with its polar backbone, N-acetyl-leucine-methylamide (NALMA), is studied by quasi-elastic neutron scattering and molecular dynamics simulation for both the completely deuterated and completely hydrogenated leucine monomer. We observe several unexpected features in the dynamics of these biological solutions under ambient conditions. The NALMA dynamics shows evidence of de Gennes narrowing, an indication of coherent long timescale structural relaxation dynamics. The translational water dynamics are analyzed in a first approximation with a jump diffusion model. At the highest solute concentrations, the hydration water dynamics is significantly suppressed and characterized by a long residential time and a slow diffusion coefficient. The analysis of the more dilute concentration solutions takes into account the results of the 2.0M solution as a model of the first hydration shell. Subtracting the first hydration layer based on the 2.0M spectra, the translational diffusion dynamics is still suppressed, although the rotational relaxation time and residential time are converged to bulk-water values. Molecular dynamics analysis shows spatially heterogeneous dynamics at high concentration that becomes homogeneous at more dilute concentrations. We discuss the hydration dynamics results of this model protein system in the context of glassy systems, protein function, and protein-protein interfaces.

  13. Modeling of ablation by photospallation using the computer program PUFF/DFRACT

    SciTech Connect

    Antoun, T.; Seaman, L.; Glinsky, M.E.

    1995-03-01

    In general, macroscopic material failure is a manifestation of irreversible changes at the microscopic level. Many tissues, which may appear to be macroscopically homogeneous, are, at a fundamental microscopic level, a composite material. For example, cornea is composed of a hyaluronic acid matrix in which layers of collagen fibers are overlaid in a crossing pattern. The points where the collagen fibers intersect are potential nucleation sites for microscopic defects, which under the action of tensile stress, nucleate, grow and coalesce to form macroscopic failure planes, or spall planes. Using a model based on microstructural evolution, this paper examines the failure process during photoablation. Specifically, the paper describes a physically motivated, micromechanical model based on the nucleation and growth of spherical voids. This model is then used to simulate photoablation of cornea. Potential for using this model to predict the stress wave and material damage measured by experiment is discussed.

  14. Improved therapeutic outcomes of thermal ablation on rat orthotopic liver allograft sarcoma models by radioiodinated hypericin induced necrosis targeted radiotherapy

    PubMed Central

    Gao, Long; Zhang, Jian; Ma, Tengchuang; Yao, Nan; Gao, Meng; Shan, Xin; Ni, Yicheng; Shao, Haibo; Xu, Ke

    2016-01-01

    Residual tumor resulting in tumor recurrence after various anticancer therapies is an unmet challenge in current clinical oncology. This study aimed to investigate the hypothesis that radioiodinated hypericin (131I-Hyp) may inhibit residual tumor recurrence after microwave ablation (MWA) on rat orthotopic liver allograft sarcoma models. Thirty Sprague-Dawley (SD) rats with hepatic tumors were divided into three groups: Group A received laparotomy MWA and sequential intravenous injection (i.v.) of 131I labelled hypericin (131I-Hyp) in a time interval of 24 h; Group B received only laparotomy MWA; Group C was a blank control. Tumor inhibitory effects were monitored with in vivo magnetic resonance imaging (MRI) and these findings were compared to histopathology data before (baseline, day 0) and 1, 4, and 8 days after MWA. In addition, biodistribution of 131I-Hyp was assessed with in vivo single-photon emission computed tomography-computed tomography (SPECT-CT) imaging, in vitro autoradiography, fluorescent microscopy, and gamma counting. A fast clearance of 131I-Hyp and increasing deposit in necrotic tumors appeared over time, with a significantly higher radioactivity than other organs (0.9169 ± 1.1138 % ID/g, P < 0.01) on day 9. Tumor growth was significantly slowed down in group A compared to group B and C according to MRI images and corresponding tumor doubling time (12.13 ± 1.99, 4.09 ± 0.97, 3.36 ± 0.72 days respectively). The crescent tagerability of 131I-Hyp to necrosis was visualized consistently by autoradiography and fluorescence microscopy. In conclusion, 131I-Hyp induced necrosis targeted radiotherapy improved therapeutic outcomes of MWA on rat orthotopic liver allograft sarcoma models. PMID:27285983

  15. Intra-lesional injection of the novel PKC activator EBC-46 rapidly ablates tumors in mouse models.

    PubMed

    Boyle, Glen M; D'Souza, Marjorie M A; Pierce, Carly J; Adams, Ryan A; Cantor, Aaron S; Johns, Jenny P; Maslovskaya, Lidia; Gordon, Victoria A; Reddell, Paul W; Parsons, Peter G

    2014-01-01

    Intra-lesional chemotherapy for treatment of cutaneous malignancies has been used for many decades, allowing higher local drug concentrations and less toxicity than systemic agents. Here we describe a novel diterpene ester, EBC-46, and provide preclinical data supporting its use as an intra-lesional treatment. A single injection of EBC-46 caused rapid inflammation and influx of blood, followed by eschar formation and rapid tumor ablation in a range of syngeneic and xenograft models. EBC-46 induced oxidative burst from purified human polymorphonuclear cells, which was prevented by the Protein Kinase C inhibitor bisindolylmaleimide-1. EBC-46 activated a more specific subset of PKC isoforms (PKC-βI, -βII, -α and -γ) compared to the structurally related phorbol 12-myristate 13-acetate (PMA). Although EBC-46 showed threefold less potency for inhibiting cell growth than PMA in vitro, it was more effective for cure of tumors in vivo. No viable tumor cells were evident four hours after injection by ex vivo culture. Pharmacokinetic profiles from treated mice indicated that EBC-46 was retained preferentially within the tumor, and resulted in significantly greater local responses (erythema, oedema) following intra-lesional injection compared with injection into normal skin. The efficacy of EBC-46 was reduced by co-injection with bisindolylmaleimide-1. Loss of vascular integrity following treatment was demonstrated by an increased permeability of endothelial cell monolayers in vitro and by CD31 immunostaining of treated tumors in vivo. Our results demonstrate that a single intra-lesional injection of EBC-46 causes PKC-dependent hemorrhagic necrosis, rapid tumor cell death and ultimate cure of solid tumors in pre-clinical models of cancer.

  16. Intra-Lesional Injection of the Novel PKC Activator EBC-46 Rapidly Ablates Tumors in Mouse Models

    PubMed Central

    Pierce, Carly J.; Adams, Ryan A.; Cantor, Aaron S.; Johns, Jenny P.; Maslovskaya, Lidia; Gordon, Victoria A.; Reddell, Paul W.; Parsons, Peter G.

    2014-01-01

    Intra-lesional chemotherapy for treatment of cutaneous malignancies has been used for many decades, allowing higher local drug concentrations and less toxicity than systemic agents. Here we describe a novel diterpene ester, EBC-46, and provide preclinical data supporting its use as an intra-lesional treatment. A single injection of EBC-46 caused rapid inflammation and influx of blood, followed by eschar formation and rapid tumor ablation in a range of syngeneic and xenograft models. EBC-46 induced oxidative burst from purified human polymorphonuclear cells, which was prevented by the Protein Kinase C inhibitor bisindolylmaleimide-1. EBC-46 activated a more specific subset of PKC isoforms (PKC-βI, -βII, -α and -γ) compared to the structurally related phorbol 12-myristate 13-acetate (PMA). Although EBC-46 showed threefold less potency for inhibiting cell growth than PMA in vitro, it was more effective for cure of tumors in vivo. No viable tumor cells were evident four hours after injection by ex vivo culture. Pharmacokinetic profiles from treated mice indicated that EBC-46 was retained preferentially within the tumor, and resulted in significantly greater local responses (erythema, oedema) following intra-lesional injection compared with injection into normal skin. The efficacy of EBC-46 was reduced by co-injection with bisindolylmaleimide-1. Loss of vascular integrity following treatment was demonstrated by an increased permeability of endothelial cell monolayers in vitro and by CD31 immunostaining of treated tumors in vivo. Our results demonstrate that a single intra-lesional injection of EBC-46 causes PKC-dependent hemorrhagic necrosis, rapid tumor cell death and ultimate cure of solid tumors in pre-clinical models of cancer. PMID:25272271

  17. A novel mouse model of tuberous sclerosis complex (TSC): eye-specific Tsc1-ablation disrupts visual-pathway development.

    PubMed

    Jones, Iwan; Hägglund, Anna-Carin; Törnqvist, Gunilla; Nord, Christoffer; Ahlgren, Ulf; Carlsson, Leif

    2015-12-01

    Tuberous sclerosis complex (TSC) is an autosomal dominant syndrome that is best characterised by neurodevelopmental deficits and the presence of benign tumours (called hamartomas) in affected organs. This multi-organ disorder results from inactivating point mutations in either the TSC1 or the TSC2 genes and consequent activation of the canonical mammalian target of rapamycin complex 1 signalling (mTORC1) pathway. Because lesions to the eye are central to TSC diagnosis, we report here the generation and characterisation of the first eye-specific TSC mouse model. We demonstrate that conditional ablation of Tsc1 in eye-committed progenitor cells leads to the accelerated differentiation and subsequent ectopic radial migration of retinal ganglion cells. This results in an increase in retinal ganglion cell apoptosis and consequent regionalised axonal loss within the optic nerve and topographical changes to the contra- and ipsilateral input within the dorsal lateral geniculate nucleus. Eyes from adult mice exhibit aberrant retinal architecture and display all the classic neuropathological hallmarks of TSC, including an increase in organ and cell size, ring heterotopias, hamartomas with retinal detachment, and lamination defects. Our results provide the first major insight into the molecular etiology of TSC within the developing eye and demonstrate a pivotal role for Tsc1 in regulating various aspects of visual-pathway development. Our novel mouse model therefore provides a valuable resource for future studies concerning the molecular mechanisms underlying TSC and also as a platform to evaluate new therapeutic approaches for the treatment of this multi-organ disorder.

  18. Detailed DSMC surface chemistry modeling of the oxidation of carbon-based ablators

    NASA Astrophysics Data System (ADS)

    Borner, Arnaud; Swaminathan-Gopalan, Krishnan; Stephani, Kelly A.; Mansour, Nagi N.

    2016-11-01

    This work employs a recently developed gas-surface interaction model (referred to herein as PSMM) constructed from molecular beam experimental data for use with the direct simulation Monte Carlo (DSMC) method. While recent models have been proposed to produce macroscopic rates consistent with the experimental measurements for use in CFD solvers, this work aims to reproduce the microscopic details (including angular distributions and time-of-flight distributions) obtained from the experimental data for modeling gas-surface interactions in DSMC. The different mechanisms considered for the PSMM model include adsorption, desorption, surface participating and direct impact mechanisms. The microscopic data of probabilities and characteristic frequencies for each type of reaction are obtained from the macroscopic parameters of reaction rate constants and sticking coefficients. Numerical simulations closely resembling a recent set of molecular beam experiments were performed using this model within DSMC, and the performance of the Zhluktov-Abe and Alba models is also assessed. The molecular beam experiments in-volved the bombardment of a relatively smooth vitreous carbon surface using a hyperthermal O/O2 beam to understand the product formation and the detailed reaction mechanisms and scattering at the surface. A comparison of the numerical flux distributions from the Zhluktov-Abe and Alba models with experimental flux distributions of the scattered products at different temperatures showed significant discrepancies. The PSMM model was found to reproduce the scattered product mole fractions as a function of temperature, as well as the reactively scattered CO time-of-flight data. Future work will aim to improve the DSMC predicted time-of-flight data for inelastically and elastically scattered O atoms based on the experimental data.

  19. Numerical models of cell death in RF ablation with monopolar and bipolar probes

    NASA Astrophysics Data System (ADS)

    Bright, Benjamin M.; Pearce, John A.

    2013-02-01

    Radio frequency (RF) is used clinically to treat unresectible tumors. Finite element modeling has proven useful in treatment planning and applicator design. Typically isotherms in the middle 50s °C have been used as the parameter of assessment in these models. We compare and contrast isotherms for multiple known Arrhenius thermal damage predictors including collagen denaturation, vascular disruption, liver coagulation and cell death. Models for RITA probe geometries are included in the study. Comparison to isotherms is sensible when the activation time is held constant, but varies considerably when heating times vary. The purpose of this paper is to demonstrate the importance of looking at specific processes and keeping track of the methods used to derive the Arrhenius coefficients in order to study the extremely complex cell death processes due to thermal therapies.

  20. Connecting micro dynamics and population distributions in system dynamics models.

    PubMed

    Fallah-Fini, Saeideh; Rahmandad, Hazhir; Chen, Hsin-Jen; Xue, Hong; Wang, Youfa

    2013-01-01

    Researchers use system dynamics models to capture the mean behavior of groups of indistinguishable population elements (e.g., people) aggregated in stock variables. Yet, many modeling problems require capturing the heterogeneity across elements with respect to some attribute(s) (e.g., body weight). This paper presents a new method to connect the micro-level dynamics associated with elements in a population with the macro-level population distribution along an attribute of interest without the need to explicitly model every element. We apply the proposed method to model the distribution of Body Mass Index and its changes over time in a sample population of American women obtained from the U.S. National Health and Nutrition Examination Survey. Comparing the results with those obtained from an individual-based model that captures the same phenomena shows that our proposed method delivers accurate results with less computation than the individual-based model.

  1. Connecting micro dynamics and population distributions in system dynamics models

    PubMed Central

    Rahmandad, Hazhir; Chen, Hsin-Jen; Xue, Hong; Wang, Youfa

    2014-01-01

    Researchers use system dynamics models to capture the mean behavior of groups of indistinguishable population elements (e.g., people) aggregated in stock variables. Yet, many modeling problems require capturing the heterogeneity across elements with respect to some attribute(s) (e.g., body weight). This paper presents a new method to connect the micro-level dynamics associated with elements in a population with the macro-level population distribution along an attribute of interest without the need to explicitly model every element. We apply the proposed method to model the distribution of Body Mass Index and its changes over time in a sample population of American women obtained from the U.S. National Health and Nutrition Examination Survey. Comparing the results with those obtained from an individual-based model that captures the same phenomena shows that our proposed method delivers accurate results with less computation than the individual-based model. PMID:25620842

  2. Chaotic dynamics in a simple dynamical green ocean plankton model

    NASA Astrophysics Data System (ADS)

    Cropp, Roger; Moroz, Irene M.; Norbury, John

    2014-11-01

    The exchange of important greenhouse gases between the ocean and atmosphere is influenced by the dynamics of near-surface plankton ecosystems. Marine plankton ecosystems are modified by climate change creating a feedback mechanism that could have significant implications for predicting future climates. The collapse or extinction of a plankton population may push the climate system across a tipping point. Dynamic green ocean models (DGOMs) are currently being developed for inclusion into climate models to predict the future state of the climate. The appropriate complexity of the DGOMs used to represent plankton processes is an ongoing issue, with models tending to become more complex, with more complicated dynamics, and an increasing propensity for chaos. We consider a relatively simple (four-population) DGOM of phytoplankton, zooplankton, bacteria and zooflagellates where the interacting plankton populations are connected by a single limiting nutrient. Chaotic solutions are possible in this 4-dimensional model for plankton population dynamics, as well as in a reduced 3-dimensional model, as we vary two of the key mortality parameters. Our results show that chaos is robust to the variation of parameters as well as to the presence of environmental noise, where the attractor of the more complex system is more robust than the attractor of its simplified equivalent. We find robust chaotic dynamics in low trophic order ecological models, suggesting that chaotic dynamics might be ubiquitous in the more complex models, but this is rarely observed in DGOM simulations. The physical equations of DGOMs are well understood and are constrained by conservation principles, but the ecological equations are not well understood, and generally have no explicitly conserved quantities. This work, in the context of the paucity of the empirical and theoretical bases upon which DGOMs are constructed, raises the interesting question of whether DGOMs better represent reality if they include

  3. Preparation of liposomal amiodarone and investigation of its cardiomyocyte-targeting ability in cardiac radiofrequency ablation rat model

    PubMed Central

    Zhuge, Ying; Zheng, Zhi-Feng; Xie, Mu-Qing; Li, Lin; Wang, Fang; Gao, Feng

    2016-01-01

    The objective of this study was to develop an amiodarone hydrochloride (ADHC)-loaded liposome (ADHC-L) formulation and investigate its potential for cardiomyocyte targeting after cardiac radiofrequency ablation (CA) in vivo. The ADHC-L was prepared by thin-film method combined with ultrasonication and extrusion. The preparation process was optimized by Box–Behnken design with encapsulation efficiency as the main evaluation index. The optimum formulation was quantitatively obtained with a diameter of 99.9±0.4 nm, a zeta potential of 35.1±10.9 mV, and an encapsulation efficiency of 99.5%±13.3%. Transmission electron microscopy showed that the liposomes were spherical particles with integrated bilayers and well dispersed with high colloidal stability. Pharmacokinetic studies were investigated in rats after intravenous administration, which revealed that compared with free ADHC treatment, ADHC-L treatment showed a 5.1-fold increase in the area under the plasma drug concentration–time curve over a period of 24 hours (AUC0–24 h) and an 8.5-fold increase in mean residence time, suggesting that ADHC-L could facilitate drug release in a more stable and sustained manner while increasing the circulation time of ADHC, especially in the blood. Biodistribution studies of ADHC-L demonstrated that ADHC concentration in the heart was 4.1 times higher after ADHC-L treatment in CA rat model compared with ADHC-L sham-operated treatment at 20 minutes postinjection. Fluorescence imaging studies further proved that the heart-targeting ability of ADHC-L was mainly due to the CA in rats. These results strongly support that ADHC-L could be exploited as a potential heart-targeting drug delivery system with enhanced bioavailability and reduced side effects for arrhythmia treatment after CA. PMID:27313453

  4. A Nonequilibrium Finite-Rate Carbon Ablation Model for Radiating Earth Re-entry Flows

    DTIC Science & Technology

    2015-09-17

    that CO was the primary product. Ong [85] used transition-state theory to deduce a set of controlling kinetic steps, calculating required transition...assumed one type of active site on the carbon surface. A contrasting feature from the Blyholder and Strickland-Constable models was that Ong ...Fluids, 7:17641776, 1995. 85. Ong , Jr., J. N. On the Kinetics of Oxidation of Graphite. Carbon, 2(3):281 297, December 1964. 86. Pagoda, C. J. and D

  5. Dynamical vegetation-atmosphere modelling of the boreal zone

    NASA Astrophysics Data System (ADS)

    Tang, Hui; Stordal, Frode; Berntsen, Terje K.; Bryn, Anders

    2016-04-01

    Vegetation interacts with climate on seasonal to inter-annual time scales through albedo, roughness, evapotranspiration, CO2 sequestration and by influencing snow accumulation and ablation. The Scandinavian mountains and high latitudes is a hot spot for land-atmosphere feedback, as the future's increased winter minimum temperature supports a boreal tree line advance, lowering the surface albedo. The northern ecosystem is dominated by mires, boreal forests and alpine heaths, in addition to agricultural land. Model studies have shown that vegetation-climate feedbacks are strong enough to lead to regime shifts in vegetation and local climate in boreal regions. Biogeophysical factors, such as albedo, the Bowen ratio, and surface roughness, are all involved in these feedbacks, and they are also altered by land use change such as reforestation. For calculations of the dynamical coupling between the atmosphere and the vegetation we have used the Earth System Model NorESM, which includes several advanced features in its land surface model (CLM4.5), such as the inclusion of the radiative forcing due to black carbon and dust deposit onto snow, improved representation of fire, permafrost and its hydrological impact, a new snow cover fraction parameterization reflecting the hysteresis in fractional snow cover for a given snow depth between accumulation and melt phases, as well as dynamic vegetation coupled with carbon-nitrogen cycles. These new features improve the representation of surface albedo feedback in Arctic. We have performed experiments with coupled as well fixed ocean for the current as a quadrupled atmospheric CO2 situation. This model configuration is used to study changes in vegetation in a high end radiative forcing case. It is contrasted with an experiment where vegetation dynamics is neglected. Changes in the features of the vegetation along with surface fluxes, albedo and atmospheric temperatures are analysed, with main emphasis on the boreal zone. In

  6. Very Large System Dynamics Models - Lessons Learned

    SciTech Connect

    Jacob J. Jacobson; Leonard Malczynski

    2008-10-01

    This paper provides lessons learned from developing several large system dynamics (SD) models. System dynamics modeling practice emphasize the need to keep models small so that they are manageable and understandable. This practice is generally reasonable and prudent; however, there are times that large SD models are necessary. This paper outlines two large SD projects that were done at two Department of Energy National Laboratories, the Idaho National Laboratory and Sandia National Laboratories. This paper summarizes the models and then discusses some of the valuable lessons learned during these two modeling efforts.

  7. Dynamic T{sub 2}-mapping during magnetic resonance guided high intensity focused ultrasound ablation of bone marrow

    SciTech Connect

    Waspe, Adam C.; Looi, Thomas; Mougenot, Charles; Amaral, Joao; Temple, Michael; Sivaloganathan, Siv; Drake, James M.

    2012-11-28

    Focal bone tumor treatments include amputation, limb-sparing surgical excision with bone reconstruction, and high-dose external-beam radiation therapy. Magnetic resonance guided high intensity focused ultrasound (MR-HIFU) is an effective non-invasive thermotherapy for palliative management of bone metastases pain. MR thermometry (MRT) measures the proton resonance frequency shift (PRFS) of water molecules and produces accurate (<1 Degree-Sign C) and dynamic (<5s) thermal maps in soft tissues. PRFS-MRT is ineffective in fatty tissues such as yellow bone marrow and, since accurate temperature measurements are required in the bone to ensure adequate thermal dose, MR-HIFU is not indicated for primary bone tumor treatments. Magnetic relaxation times are sensitive to lipid temperature and we hypothesize that bone marrow temperature can be determined accurately by measuring changes in T{sub 2}, since T{sub 2} increases linearly in fat during heating. T{sub 2}-mapping using dual echo times during a dynamic turbo spin-echo pulse sequence enabled rapid measurement of T{sub 2}. Calibration of T{sub 2}-based thermal maps involved heating the marrow in a bovine femur and simultaneously measuring T{sub 2} and temperature with a thermocouple. A positive T{sub 2} temperature dependence in bone marrow of 20 ms/ Degree-Sign C was observed. Dynamic T{sub 2}-mapping should enable accurate temperature monitoring during MR-HIFU treatment of bone marrow and shows promise for improving the safety and reducing the invasiveness of pediatric bone tumor treatments.

  8. Comparing models of Red Knot population dynamics

    USGS Publications Warehouse

    McGowan, Conor

    2015-01-01

    Predictive population modeling contributes to our basic scientific understanding of population dynamics, but can also inform management decisions by evaluating alternative actions in virtual environments. Quantitative models mathematically reflect scientific hypotheses about how a system functions. In Delaware Bay, mid-Atlantic Coast, USA, to more effectively manage horseshoe crab (Limulus polyphemus) harvests and protect Red Knot (Calidris canutus rufa) populations, models are used to compare harvest actions and predict the impacts on crab and knot populations. Management has been chiefly driven by the core hypothesis that horseshoe crab egg abundance governs the survival and reproduction of migrating Red Knots that stopover in the Bay during spring migration. However, recently, hypotheses proposing that knot dynamics are governed by cyclical lemming dynamics garnered some support in data analyses. In this paper, I present alternative models of Red Knot population dynamics to reflect alternative hypotheses. Using 2 models with different lemming population cycle lengths and 2 models with different horseshoe crab effects, I project the knot population into the future under environmental stochasticity and parametric uncertainty with each model. I then compare each model's predictions to 10 yr of population monitoring from Delaware Bay. Using Bayes' theorem and model weight updating, models can accrue weight or support for one or another hypothesis of population dynamics. With 4 models of Red Knot population dynamics and only 10 yr of data, no hypothesis clearly predicted population count data better than another. The collapsed lemming cycle model performed best, accruing ~35% of the model weight, followed closely by the horseshoe crab egg abundance model, which accrued ~30% of the weight. The models that predicted no decline or stable populations (i.e. the 4-yr lemming cycle model and the weak horseshoe crab effect model) were the most weakly supported.

  9. The relationship among complex fractionated electrograms, wavebreak, phase singularity, and local dominant frequency in fibrillation wave-dynamics: a modeling comparison study.

    PubMed

    Yun, Yonghyeon; Hwang, Minki; Park, Jae Hyung; Shin, Hangsik; Shim, Eun Bo; Pak, Hui-Nam

    2014-03-01

    Although complex fractionated electrogram (CFE) is known to be a target for catheter ablation of fibrillation, its physiological meaning in fibrillation wave-dynamics remains to be clarified. We evaluated the spatiotemporal relationships among the parameters of fibrillation wave-dynamics by simulation modeling. We generated maps of CFE-cycle length (CFE-CL), local dominant frequency (LDF), wave break (WB), and phase singularity (PS) of fibrillation in 2-dimensional homogeneous bidomain cardiac modeling (1,000 × 1,000 cells ten Tusscher model). We compared spatiotemporal correlations by dichotomizing each maps into 10 × 10 lattice zones. In spatial distribution, WB and PS showed excellent correlation (R = 0.963, P < 0.001). CFE-CL had weak correlations with WB (R = 0.288, P < 0.001), PS (R = 0.313, P < 0.001), and LDF (R = -0.411, P < 0.001). However, LDF did not show correlation with PS or WB. PSs were mostly distributed at the periphery of low CFE-CL area. Virtual ablation (5% of critical mass) of CFE-CL < 100 ms terminated fibrillation at 14.3 sec, and high LDF ablation (5% of critical mass) changed fibrillation to organized tachycardia, respectively. In homogeneous 2D fibrillation modeling, CFE-CL was weakly correlated with WB, PS, and LDF, spatiotemporally. PSs are mostly positioned at the periphery of low CFE-CL areas, and virtual ablation targeting low CFE-CL regions terminated fibrillation successfully.

  10. A mouse model of spontaneous preterm birth based on the genetic ablation of biglycan and decorin

    PubMed Central

    Calmus, Megan L.; Macksoud, Elyse E.; Tucker, Richard; Iozzo, Renato V.; Lechner, Beatrice E.

    2011-01-01

    Preterm premature rupture of membranes is responsible for one third of preterm births. Ehlers-Danlos syndrome (EDS) is associated with preterm premature rupture of membranes in humans. Notably, an EDS variant is caused by a genetic mutation resulting in abnormal secretion of biglycan and decorin, two small leucine-rich proteoglycans highly expressed in reproductive tissues. Because biglycan/decorin null mutant (Bgn−/−Dcn−/−) mice demonstrate phenotypic changes similar to EDS, we utilized this model to test whether either or both biglycan and decorin play a role in the attainment of successful term gestation. Wild-type, biglycan null mutant, decorin null mutant and biglycan/decorin null mutant pregnancies were assessed for length of gestation, pup and placenta weight and litter size. Quantitative real-time polymerase chain reaction was performed to measure biglycan and decorin gene expression and immunohistochemistry was performed to assess protein expression in placenta and fetal membranes at embryonic day E12, E15 and E18. Bgn−/−Dcn−/− dams displayed preterm birth, whereas the possession of at least two biglycan or decorin wild-type alleles was protective of preterm birth. Bgn−/−Dcn−/− pups were decreased at postnatal day P1 but not at E18. Biglycan and decorin were upregulated in the placenta in each other’s absence and were developmentally regulated in fetal membranes, suggesting that these two proteoglycans demonstrate genetic complementation and contribute to gestational success in a dose dependent manner. Thus, the biglycan/decorin null mutant mouse is a model of genetically induced preterm birth and perinatal loss. This model presents novel targets for preventive or therapeutic manipulation of preterm birth. PMID:21502335

  11. Influence of water environment on holmium laser ablation performance for hard tissues.

    PubMed

    Lü, Tao; Xiao, Qing; Li, Zhengjia

    2012-05-01

    This study clarifies the ablation differences in air and in water for hard biological tissues, which are irradiated by fiber-guided long-pulsed holmium lasers. High-speed photography is used to record the dynamic characteristics of ablation plumes and vaporization bubbles induced by pulsed holmium lasers. The ablation morphologies and depth of hard tissues are quantitatively measured by optical coherence microscopy. Explosive vaporization effects in water play a positive role in the contact ablation process and are directly responsible for significant ablation enhancement. Furthermore, water layer depth can also contribute to ablation performance. Under the same laser parameters for fiber-tissue contact ablation in air and water, ablation performances are comparable for a single-laser pulse, but for more laser pulses the ablation performances in water are better than those in air. Comprehensive knowledge of ablation differences under various environments is important, especially in medical procedures that are performed in a liquid environment.

  12. Modeling microbial growth and dynamics.

    PubMed

    Esser, Daniel S; Leveau, Johan H J; Meyer, Katrin M

    2015-11-01

    Modeling has become an important tool for widening our understanding of microbial growth in the context of applied microbiology and related to such processes as safe food production, wastewater treatment, bioremediation, or microbe-mediated mining. Various modeling techniques, such as primary, secondary and tertiary mathematical models, phenomenological models, mechanistic or kinetic models, reactive transport models, Bayesian network models, artificial neural networks, as well as agent-, individual-, and particle-based models have been applied to model microbial growth and activity in many applied fields. In this mini-review, we summarize the basic concepts of these models using examples and applications from food safety and wastewater treatment systems. We further review recent developments in other applied fields focusing on models that explicitly include spatial relationships. Using these examples, we point out the conceptual similarities across fields of application and encourage the combined use of different modeling techniques in hybrid models as well as their cross-disciplinary exchange. For instance, pattern-oriented modeling has its origin in ecology but may be employed to parameterize microbial growth models when experimental data are scarce. Models could also be used as virtual laboratories to optimize experimental design analogous to the virtual ecologist approach. Future microbial growth models will likely become more complex to benefit from the rich toolbox that is now available to microbial growth modelers.

  13. Differential equation models for sharp threshold dynamics.

    PubMed

    Schramm, Harrison C; Dimitrov, Nedialko B

    2014-01-01

    We develop an extension to differential equation models of dynamical systems to allow us to analyze probabilistic threshold dynamics that fundamentally and globally change system behavior. We apply our novel modeling approach to two cases of interest: a model of infectious disease modified for malware where a detection event drastically changes dynamics by introducing a new class in competition with the original infection; and the Lanchester model of armed conflict, where the loss of a key capability drastically changes the effectiveness of one of the sides. We derive and demonstrate a step-by-step, repeatable method for applying our novel modeling approach to an arbitrary system, and we compare the resulting differential equations to simulations of the system's random progression. Our work leads to a simple and easily implemented method for analyzing probabilistic threshold dynamics using differential equations.

  14. Equivalent dynamic model of DEMES rotary joint

    NASA Astrophysics Data System (ADS)

    Zhao, Jianwen; Wang, Shu; Xing, Zhiguang; McCoul, David; Niu, Junyang; Huang, Bo; Liu, Liwu; Leng, Jinsong

    2016-07-01

    The dielectric elastomer minimum energy structure (DEMES) can realize large angular deformations by a small voltage-induced strain of the dielectric elastomer (DE), so it is a suitable candidate to make a rotary joint for a soft robot. Dynamic analysis is necessary for some applications, but the dynamic response of DEMESs is difficult to model because of the complicated morphology and viscoelasticity of the DE film. In this paper, a method composed of theoretical analysis and experimental measurement is presented to model the dynamic response of a DEMES rotary joint under an alternating voltage. Based on measurements of equivalent driving force and damping of the DEMES, the model can be derived. Some experiments were carried out to validate the equivalent dynamic model. The maximum angle error between model and experiment is greater than ten degrees, but it is acceptable to predict angular velocity of the DEMES, therefore, it can be applied in feedforward-feedback compound control.

  15. Dynamics Modelling of Biolistic Gene Guns

    SciTech Connect

    Zhang, M.; Tao, W.; Pianetta, P.A.

    2009-06-04

    The gene transfer process using biolistic gene guns is a highly dynamic process. To achieve good performance, the process needs to be well understood and controlled. Unfortunately, no dynamic model is available in the open literature for analysing and controlling the process. This paper proposes such a model. Relationships of the penetration depth with the helium pressure, the penetration depth with the acceleration distance, and the penetration depth with the micro-carrier radius are presented. Simulations have also been conducted. The results agree well with experimental results in the open literature. The contribution of this paper includes a dynamic model for improving and manipulating performance of the biolistic gene gun.

  16. Thermomechanical Ablation

    DTIC Science & Technology

    1975-09-01

    thermocouple inside of the model was recorded by a continuous strip chart recorder. Model shape as a function of time was obtained from 35 mm photographs of... CarbonDioxide Sublimation at an Axisymmetric Stagnation Point." Int. J. Heat and Mass Transfer, 8 1965.pp 511-51 47- 26. Zeldovich, Y. B. "On the Theory of

  17. Markov state models of biomolecular conformational dynamics

    PubMed Central

    Chodera, John D.; Noé, Frank

    2014-01-01

    It has recently become practical to construct Markov state models (MSMs) that reproduce the long-time statistical conformational dynamics of biomolecules using data from molecular dynamics simulations. MSMs can predict both stationary and kinetic quantities on long timescales (e.g. milliseconds) using a set of atomistic molecular dynamics simulations that are individually much shorter, thus addressing the well-known sampling problem in molecular dynamics simulation. In addition to providing predictive quantitative models, MSMs greatly facilitate both the extraction of insight into biomolecular mechanism (such as folding and functional dynamics) and quantitative comparison with single-molecule and ensemble kinetics experiments. A variety of methodological advances and software packages now bring the construction of these models closer to routine practice. Here, we review recent progress in this field, considering theoretical and methodological advances, new software tools, and recent applications of these approaches in several domains of biochemistry and biophysics, commenting on remaining challenges. PMID:24836551

  18. Dynamic coupling of three hydrodynamic models

    NASA Astrophysics Data System (ADS)

    Hartnack, J. N.; Philip, G. T.; Rungoe, M.; Smith, G.; Johann, G.; Larsen, O.; Gregersen, J.; Butts, M. B.

    2008-12-01

    The need for integrated modelling is evidently present within the field of flood management and flood forecasting. Engineers, modellers and managers are faced with flood problems which transcend the classical hydrodynamic fields of urban, river and coastal flooding. Historically the modeller has been faced with having to select one hydrodynamic model to cover all the aspects of the potentially complex dynamics occurring in a flooding situation. Such a single hydrodynamic model does not cover all dynamics of flood modelling equally well. Thus the ideal choice may in fact be a combination of models. Models combining two numerical/hydrodynamic models are becoming more standard, typically these models combine a 1D river model with a 2D overland flow model or alternatively a 1D sewer/collection system model with a 2D overland solver. In complex coastal/urban areas the flood dynamics may include rivers/streams, collection/storm water systems along with the overland flow. The dynamics within all three areas is of the same time scale and there is feedback in the system across the couplings. These two aspects dictate a fully dynamic three way coupling as opposed to running the models sequentially. It will be shown that the main challenges of the three way coupling are time step issues related to the difference in numerical schemes used in the three model components and numerical instabilities caused by the linking of the model components. MIKE FLOOD combines the models MIKE 11, MIKE 21 and MOUSE into one modelling framework which makes it possible to couple any combination of river, urban and overland flow fully dynamically. The MIKE FLOOD framework will be presented with an overview of the coupling possibilities. The flood modelling concept will be illustrated through real life cases in Australia and in Germany. The real life cases reflect dynamics and interactions across all three model components which are not possible to reproduce using a two-way coupling alone. The

  19. Thermal modeling for pulsed radiofrequency ablation: analytical study based on hyperbolic heat conduction.

    PubMed

    López Molina, Juan A; Rivera, María J; Trujillo, Macarena; Berjano, Enrique J

    2009-04-01

    The objectives of this study were to model the temperature progress of a pulsed radiofrequency (RF) power during RF heating of biological tissue, and to employ the hyperbolic heat transfer equation (HHTE), which takes the thermal wave behavior into account, and compare the results to those obtained using the heat transfer equation based on Fourier theory (FHTE). A theoretical model was built based on an active spherical electrode completely embedded in the biological tissue, after which HHTE and FHTE were analytically solved. We found three typical waveforms for the temperature progress depending on the relations between the dimensionless duration of the RF pulse delta(a) and the expression square root of lambda(rho-1), with lambda as the dimensionless thermal relaxation time of the tissue and rho as the dimensionless position. In the case of a unique RF pulse, the temperature at any location was the result of the overlapping of two different heat sources delayed for a duration delta(a) (each heat source being produced by a RF pulse of limitless duration). The most remarkable feature in the HHTE analytical solution was the presence of temperature peaks traveling through the medium at a finite speed. These peaks not only occurred during the RF power switch-on period but also during switch off. Finally, a physical explanation for these temperature peaks is proposed based on the interaction of forward and reverse thermal waves. All-purpose analytical solutions for FHTE and HHTE were obtained during pulsed RF heating of biological tissues, which could be used for any value of pulsing frequency and duty cycle.

  20. Dynamic Modeling, Chaos, and Cognitive Development.

    ERIC Educational Resources Information Center

    Howe, Mark L.; Rabinowitz, F. Michael

    1994-01-01

    Introduces the essential constructs involved in dynamic modeling, in relation to issues in psychological development. Presents several instances of how the principles of dynamic systems can be translated into mathematical formalism. Concludes that transition is a key invariance in development and that single subject, longitudinal designs are…

  1. Two-Stage Reduction Of Dynamical Models

    NASA Technical Reports Server (NTRS)

    Lee, Allan Y.; Tsuha, Walter S.

    1993-01-01

    No longer necessary to solve eigenvalue problems of high order. Component-mode projection-and-assembly model-reduction (COMPARE) method provides approximation of dynamics of vibrations of complicated, multiple flexible bodies by use of mathematical models of reduced order. Incorporates component-mode synthesis (CMS) method and enhanced projection-and-assembly (EP&A) method, described in "Enhanced Method of Reduction of Dynamical Models" (NPO-18402), providing for somewhat simplified two-stage process in which order of applicable mathematical models reduced. Reduced-order models used to design algorithms of control systems to suppress vibrations or otherwise control structure.

  2. Model Verification of Mixed Dynamic Systems

    NASA Technical Reports Server (NTRS)

    Evensen, D. A.; Chrostowski, J. D.; Hasselman, T. K.

    1982-01-01

    MOVER uses experimental data to verify mathematical models of "mixed" dynamic systems. The term "mixed" refers to interactive mechanical, hydraulic, electrical, and other components. Program compares analytical transfer functions with experiment.

  3. Automated adaptive inference of phenomenological dynamical models

    NASA Astrophysics Data System (ADS)

    Daniels, Bryan C.; Nemenman, Ilya

    2015-08-01

    Dynamics of complex systems is often driven by large and intricate networks of microscopic interactions, whose sheer size obfuscates understanding. With limited experimental data, many parameters of such dynamics are unknown, and thus detailed, mechanistic models risk overfitting and making faulty predictions. At the other extreme, simple ad hoc models often miss defining features of the underlying systems. Here we develop an approach that instead constructs phenomenological, coarse-grained models of network dynamics that automatically adapt their complexity to the available data. Such adaptive models produce accurate predictions even when microscopic details are unknown. The approach is computationally tractable, even for a relatively large number of dynamical variables. Using simulated data, it correctly infers the phase space structure for planetary motion, avoids overfitting in a biological signalling system and produces accurate predictions for yeast glycolysis with tens of data points and over half of the interacting species unobserved.

  4. Automated adaptive inference of phenomenological dynamical models

    PubMed Central

    Daniels, Bryan C.; Nemenman, Ilya

    2015-01-01

    Dynamics of complex systems is often driven by large and intricate networks of microscopic interactions, whose sheer size obfuscates understanding. With limited experimental data, many parameters of such dynamics are unknown, and thus detailed, mechanistic models risk overfitting and making faulty predictions. At the other extreme, simple ad hoc models often miss defining features of the underlying systems. Here we develop an approach that instead constructs phenomenological, coarse-grained models of network dynamics that automatically adapt their complexity to the available data. Such adaptive models produce accurate predictions even when microscopic details are unknown. The approach is computationally tractable, even for a relatively large number of dynamical variables. Using simulated data, it correctly infers the phase space structure for planetary motion, avoids overfitting in a biological signalling system and produces accurate predictions for yeast glycolysis with tens of data points and over half of the interacting species unobserved. PMID:26293508

  5. MODELING MICROBUBBLE DYNAMICS IN BIOMEDICAL APPLICATIONS*

    PubMed Central

    CHAHINE, Georges L.; HSIAO, Chao-Tsung

    2012-01-01

    Controlling microbubble dynamics to produce desirable biomedical outcomes when and where necessary and avoid deleterious effects requires advanced knowledge, which can be achieved only through a combination of experimental and numerical/analytical techniques. The present communication presents a multi-physics approach to study the dynamics combining viscous- in-viscid effects, liquid and structure dynamics, and multi bubble interaction. While complex numerical tools are developed and used, the study aims at identifying the key parameters influencing the dynamics, which need to be included in simpler models. PMID:22833696

  6. Approximate dynamic model of a turbojet engine

    NASA Technical Reports Server (NTRS)

    Artemov, O. A.

    1978-01-01

    An approximate dynamic nonlinear model of a turbojet engine is elaborated on as a tool in studying the aircraft control loop, with the turbojet engine treated as an actuating component. Approximate relationships linking the basic engine parameters and shaft speed are derived to simplify the problem, and to aid in constructing an approximate nonlinear dynamic model of turbojet engine performance useful for predicting aircraft motion.

  7. A dynamical model of color confinement

    NASA Astrophysics Data System (ADS)

    Loh, S.; Biró, T. S.; Mosel, U.; Thoma, M. H.

    1996-02-01

    A dynamical model of confinement based on a transport theoretical description of the Friedberg-Lee model is extended to explicit color degrees of freedom. The string tension is reproduced by an adiabatic string formation from the nucleon ground state. Color isovector oscillation modes of a qq¯-system are investigated for a wide range of relative qq¯-momenta and the dynamical impact of color confinement on the quark motion is shown.

  8. Thermophysical and gas-dynamic characteristics of laser-induced gasplasma flows under femtosecond laser ablation of titanium in vacuum

    SciTech Connect

    Loktionov, E Yu; Protasov, Yu S; Protasov, Yu Yu

    2014-03-28

    We report the results of experimental investigation of thermophysical and gas-dynamic characteristics of the gas-plasma flows induced by ultrashort (45 – 60 fs) laser pulse irradiation (the radiation wavelength λ = 400, 800 nm) of a titanium target in vacuum (∼5 × 10{sup -4} mbar). The use of combined interferometric technique and complex experimental data processing allowed us to estimate the momentum coupling coefficient (C{sub m} ∼ 10{sup -4} N W{sup -1}), the efficiency of laser energy conversion to the kinetic energy of the gas-plasma flow (65% – 85%), the spatiotemporal distributions of the particle density (n{sub e} = 10{sup 18} – 10{sup 20} cm{sup -3}) and velocity ((v)=4 – 9 km s{sup -1}), the static (10{sup 6} – 10{sup 8} Pa) and total (10{sup 7} – 10{sup 11} Pa) pressure and temperature (T=7 – 50 kK) in the flow. Our data are compared with published data obtained by other methods. (interaction of laser radiation with matter. laser plasma)

  9. Single timepoint models of dynamic systems

    PubMed Central

    Sachs, K.; Itani, S.; Fitzgerald, J.; Schoeberl, B.; Nolan, G. P.; Tomlin, C. J.

    2013-01-01

    Many interesting studies aimed at elucidating the connectivity structure of biomolecular pathways make use of abundance measurements, and employ statistical and information theoretic approaches to assess connectivities. These studies often do not address the effects of the dynamics of the underlying biological system, yet dynamics give rise to impactful issues such as timepoint selection and its effect on structure recovery. In this work, we study conditions for reliable retrieval of the connectivity structure of a dynamic system, and the impact of dynamics on structure-learning efforts. We encounter an unexpected problem not previously described in elucidating connectivity structure from dynamic systems, show how this confounds structure learning of the system and discuss possible approaches to overcome the confounding effect. Finally, we test our hypotheses on an accurate dynamic model of the IGF signalling pathway. We use two structure-learning methods at four time points to contrast the performance and robustness of those methods in terms of recovering correct connectivity. PMID:24511382

  10. Performance of a Novel Bipolar/Monopolar Radiofrequency Ablation Device on the Beating Heart in an Acute Porcine Model

    PubMed Central

    Saint, Lindsey L.; Lawrance, Christopher P.; Okada, Shoichi; Kazui, Toshinobu; Robertson, Jason O.; Schuessler, Richard B.; Damiano, Ralph J.

    2013-01-01

    SUMMARY Objective Although the advent of ablation technology has simplified and shortened surgery for atrial fibrillation, only bipolar clamps have reliably been able to create transmural lesions on the beating heart. Currently there are no devices capable of reproducibly creating the long linear lesions in the right and left atria needed to perform a Cox-Maze procedure. This study evaluated the performance of a novel suction-assisted radiofrequency device that uses both bipolar and monopolar energy to create lesions from an epicardial approach on the beating heart. Methods Six domestic pigs underwent median sternotomy. A dual bipolar/monopolar radiofrequency ablation device was used to create epicardial linear lesions on the superior and inferior vena cavae, right and left atrial free walls, and right and left atrial appendages. The heart was stained with 2,3,5-triphenyl-tetrazolium chloride and each lesion was cross-sectioned at 5mm intervals. Lesion depth and transmurality were determined. Results Transmurality was documented in 94% of all cross-sections, and 68% of all ablation lines were transmural along their entire length. Tissue thickness was not different between transmural and non-transmural cross-sections (3.1 ± 1.3 and 3.4 ± 2.1, p=0.57, respectively), nor was the anatomic location on the heart (p=0.45 for the distribution). Of the cross-sections located at the end of the ablation line, 11% (8/75) were found to be non-transmural, whereas only 4% (8/195) of cross-sections located within the line of ablation were found to be non-transmural (p=0.04). Logistic regression analysis demonstrated that failure of the device to create transmural lesions was associated with low body temperature (p=0.006), but not with cardiac output (p=0.54). Conclusions This novel device was able to consistently create transmural epicardial lesions on the beating heart, regardless of anatomic location, cardiac output or tissue thickness. The performance of this device was

  11. Swarm Intelligence for Urban Dynamics Modelling

    NASA Astrophysics Data System (ADS)

    Ghnemat, Rawan; Bertelle, Cyrille; Duchamp, Gérard H. E.

    2009-04-01

    In this paper, we propose swarm intelligence algorithms to deal with dynamical and spatial organization emergence. The goal is to model and simulate the developement of spatial centers using multi-criteria. We combine a decentralized approach based on emergent clustering mixed with spatial constraints or attractions. We propose an extension of the ant nest building algorithm with multi-center and adaptive process. Typically, this model is suitable to analyse and simulate urban dynamics like gentrification or the dynamics of the cultural equipment in urban area.

  12. Swarm Intelligence for Urban Dynamics Modelling

    SciTech Connect

    Ghnemat, Rawan; Bertelle, Cyrille; Duchamp, Gerard H. E.

    2009-04-16

    In this paper, we propose swarm intelligence algorithms to deal with dynamical and spatial organization emergence. The goal is to model and simulate the developement of spatial centers using multi-criteria. We combine a decentralized approach based on emergent clustering mixed with spatial constraints or attractions. We propose an extension of the ant nest building algorithm with multi-center and adaptive process. Typically, this model is suitable to analyse and simulate urban dynamics like gentrification or the dynamics of the cultural equipment in urban area.

  13. Discrete model for DNA-promoter dynamics

    NASA Astrophysics Data System (ADS)

    Salerno, Mario

    1991-10-01

    We introduce a discrete model for DNA that takes into account the information about specific base sequences along the double helix. We use this model to study nonlinear wave dynamics of the T7A1 DNA promoter. As results we show the existence in the promoter of a dynamically active region in which static solitons acquire finite velocities, which contrasts with regions where solitons simply remain static. Furthermore, when they pass through this region moving solitons are accelerated, decelerated, or reflected, depending on their initial velocities. The possibility that these dynamical effects play a role in the mechanism of genetic activation is suggested.

  14. Battery electrochemical nonlinear/dynamic SPICE model

    SciTech Connect

    Glass, M.C.

    1996-12-31

    An Integrated Battery Model has been produced which accurately represents DC nonlinear battery behavior together with transient dynamics. The NiH{sub 2} battery model begins with a given continuous-function electrochemical math model. The math model for the battery consists of the sum of two electrochemical process DC currents, which are a function of the battery terminal voltage. This paper describes procedures for realizing a voltage-source SPICE model which implements the electrochemical equations using behavioral sources. The model merges the essentially DC non-linear behavior of the electrochemical model, together with the empirical AC dynamic terminal impedance from measured data. Thus the model integrates the short-term linear impedance behavior, with the long-term nonlinear DC resistance behavior. The long-duration non-Faradaic capacitive behavior of the battery is represented by a time constant. Outputs of the model include battery voltage/current, state-of-charge, and charge-current efficiency.

  15. Model systems for single molecule polymer dynamics.

    PubMed

    Latinwo, Folarin; Schroeder, Charles M

    2011-01-01

    Double stranded DNA (dsDNA) has long served as a model system for single molecule polymer dynamics. However, dsDNA is a semiflexible polymer, and the structural rigidity of the DNA double helix gives rise to local molecular properties and chain dynamics that differ from flexible chains, including synthetic organic polymers. Recently, we developed single stranded DNA (ssDNA) as a new model system for single molecule studies of flexible polymer chains. In this work, we discuss model polymer systems in the context of "ideal" and "real" chain behavior considering thermal blobs, tension blobs, hydrodynamic drag and force-extension relations. In addition, we present monomer aspect ratio as a key parameter describing chain conformation and dynamics, and we derive dynamical scaling relations in terms of this molecular-level parameter. We show that asymmetric Kuhn segments can suppress monomer-monomer interactions, thereby altering global chain dynamics. Finally, we discuss ssDNA in the context of a new model system for single molecule polymer dynamics. Overall, we anticipate that future single polymer studies of flexible chains will reveal new insight into the dynamic behavior of "real" polymers, which will highlight the importance of molecular individualism and the prevalence of non-linear phenomena.

  16. Model systems for single molecule polymer dynamics

    PubMed Central

    Latinwo, Folarin

    2012-01-01

    Double stranded DNA (dsDNA) has long served as a model system for single molecule polymer dynamics. However, dsDNA is a semiflexible polymer, and the structural rigidity of the DNA double helix gives rise to local molecular properties and chain dynamics that differ from flexible chains, including synthetic organic polymers. Recently, we developed single stranded DNA (ssDNA) as a new model system for single molecule studies of flexible polymer chains. In this work, we discuss model polymer systems in the context of “ideal” and “real” chain behavior considering thermal blobs, tension blobs, hydrodynamic drag and force–extension relations. In addition, we present monomer aspect ratio as a key parameter describing chain conformation and dynamics, and we derive dynamical scaling relations in terms of this molecular-level parameter. We show that asymmetric Kuhn segments can suppress monomer–monomer interactions, thereby altering global chain dynamics. Finally, we discuss ssDNA in the context of a new model system for single molecule polymer dynamics. Overall, we anticipate that future single polymer studies of flexible chains will reveal new insight into the dynamic behavior of “real” polymers, which will highlight the importance of molecular individualism and the prevalence of non-linear phenomena. PMID:22956980

  17. Pulmonary ablation: a primer.

    PubMed

    Roberton, Benjamin J; Liu, David; Power, Mark; Wan, John M C; Stuart, Sam; Klass, Darren; Yee, John

    2014-05-01

    Percutaneous image-guided thermal ablation is safe and efficacious in achieving local control and improving outcome in the treatment of both early stage non-small-cell lung cancer and pulmonary metastatic disease, in which surgical treatment is precluded by comorbidity, poor cardiorespiratory reserve, or unfavorable disease distribution. Radiofrequency ablation is the most established technology, but new thermal ablation technologies such as microwave ablation and cryoablation may offer some advantages. The use of advanced techniques, such as induced pneumothorax and the popsicle stick technique, or combining thermal ablation with radiotherapy, widens the treatment options available to the multidisciplinary team. The intent of this article is to provide the reader with a practical knowledge base of pulmonary ablation by concentrating on indications, techniques, and follow-up.

  18. Renal Ablation Update

    PubMed Central

    Khiatani, Vishal; Dixon, Robert G.

    2014-01-01

    Thermal ablative technologies have evolved considerably in the recent past and are now an important component of current clinical guidelines for the treatment of small renal masses. Both radiofrequency ablation and cryoablation have intermediate-term oncologic control that rivals surgical options, with favorable complication profiles. Studies comparing cryoablation and radiofrequency ablation show no significant difference in oncologic control or complication profile between the two modalities. Early data from small series with microwave ablation have shown similar promising results. Newer technologies including irreversible electroporation and high-intensity–focused ultrasound have theoretical advantages, but will require further research before becoming a routine part of the ablation armamentarium. The purpose of this review article is to discuss the current ablative technologies available, briefly review their mechanisms of action, discuss technical aspects of each, and provide current data supporting their use. PMID:25049445

  19. A stochastic model of human gait dynamics

    NASA Astrophysics Data System (ADS)

    Ashkenazy, Yosef; M. Hausdorff, Jeffrey; Ch. Ivanov, Plamen; Eugene Stanley, H.

    2002-12-01

    We present a stochastic model of gait rhythm dynamics, based on transitions between different “neural centers”, that reproduces distinctive statistical properties of normal human walking. By tuning one model parameter, the transition (hopping) range, the model can describe alterations in gait dynamics from childhood to adulthood-including a decrease in the correlation and volatility exponents with maturation. The model also generates time series with multifractal spectra whose broadness depends only on this parameter. Moreover, we find that the volatility exponent increases monotonically as a function of the width of the multifractal spectrum, suggesting the possibility of a change in multifractality with maturation.

  20. Integration of Dynamic Models in Range Operations

    NASA Technical Reports Server (NTRS)

    Bardina, Jorge; Thirumalainambi, Rajkumar

    2004-01-01

    This work addresses the various model interactions in real-time to make an efficient internet based decision making tool for Shuttle launch. The decision making tool depends on the launch commit criteria coupled with physical models. Dynamic interaction between a wide variety of simulation applications and techniques, embedded algorithms, and data visualizations are needed to exploit the full potential of modeling and simulation. This paper also discusses in depth details of web based 3-D graphics and applications to range safety. The advantages of this dynamic model integration are secure accessibility and distribution of real time information to other NASA centers.

  1. Multi-scale modelling and dynamics

    NASA Astrophysics Data System (ADS)

    Müller-Plathe, Florian

    Moving from a fine-grained particle model to one of lower resolution leads, with few exceptions, to an acceleration of molecular mobility, higher diffusion coefficient, lower viscosities and more. On top of that, the level of acceleration is often different for different dynamical processes as well as for different state points. While the reasons are often understood, the fact that coarse-graining almost necessarily introduces unpredictable acceleration of the molecular dynamics severely limits its usefulness as a predictive tool. There are several attempts under way to remedy these shortcoming of coarse-grained models. On the one hand, we follow bottom-up approaches. They attempt already when the coarse-graining scheme is conceived to estimate their impact on the dynamics. This is done by excess-entropy scaling. On the other hand, we also pursue a top-down development. Here we start with a very coarse-grained model (dissipative particle dynamics) which in its native form produces qualitatively wrong polymer dynamics, as its molecules cannot entangle. This model is modified by additional temporary bonds, so-called slip springs, to repair this defect. As a result, polymer melts and solutions described by the slip-spring DPD model show correct dynamical behaviour. Read more: ``Excess entropy scaling for the segmental and global dynamics of polyethylene melts'', E. Voyiatzis, F. Müller-Plathe, and M.C. Böhm, Phys. Chem. Chem. Phys. 16, 24301-24311 (2014). [DOI: 10.1039/C4CP03559C] ``Recovering the Reptation Dynamics of Polymer Melts in Dissipative Particle Dynamics Simulations via Slip-Springs'', M. Langeloth, Y. Masubuchi, M. C. Böhm, and F. Müller-Plathe, J. Chem. Phys. 138, 104907 (2013). [DOI: 10.1063/1.4794156].

  2. Radiofrequency Ablation of Cancer

    SciTech Connect

    Friedman, Marc; Mikityansky, Igor; Kam, Anthony; Libutti, Steven K.; Walther, McClellan M.; Neeman, Ziv; Locklin, Julia K.; Wood, Bradford J.

    2004-09-15

    Radiofrequency ablation (RFA) has been used for over 18 years for treatment of nerve-related chronic pain and cardiac arrhythmias. In the last 10 years, technical developments have increased ablation volumes in a controllable, versatile, and relatively inexpensive manner. The host of clinical applications for RFA have similarly expanded. Current RFA equipment, techniques, applications, results, complications, and research avenues for local tumor ablation are summarized.

  3. Uncertainty and Sensitivity in Surface Dynamics Modeling

    NASA Astrophysics Data System (ADS)

    Kettner, Albert J.; Syvitski, James P. M.

    2016-05-01

    Papers for this special issue on 'Uncertainty and Sensitivity in Surface Dynamics Modeling' heralds from papers submitted after the 2014 annual meeting of the Community Surface Dynamics Modeling System or CSDMS. CSDMS facilitates a diverse community of experts (now in 68 countries) that collectively investigate the Earth's surface-the dynamic interface between lithosphere, hydrosphere, cryosphere, and atmosphere, by promoting, developing, supporting and disseminating integrated open source software modules. By organizing more than 1500 researchers, CSDMS has the privilege of identifying community strengths and weaknesses in the practice of software development. We recognize, for example, that progress has been slow on identifying and quantifying uncertainty and sensitivity in numerical modeling of earth's surface dynamics. This special issue is meant to raise awareness for these important subjects and highlight state-of-the-art progress.

  4. Energy Balance Models and Planetary Dynamics

    NASA Technical Reports Server (NTRS)

    Domagal-Goldman, Shawn

    2012-01-01

    We know that planetary dynamics can have a significant affect on the climate of planets. Planetary dynamics dominate the glacial-interglacial periods on Earth, leaving a significant imprint on the geological record. They have also been demonstrated to have a driving influence on the climates of other planets in our solar system. We should therefore expect th.ere to be similar relationships on extrasolar planets. Here we describe a simple energy balance model that can predict the growth and thickness of glaciers, and their feedbacks on climate. We will also describe model changes that we have made to include planetary dynamics effects. This is the model we will use at the start of our collaboration to handle the influence of dynamics on climate.

  5. Dynamic landscape models of coevolutionary games.

    PubMed

    Richter, Hendrik

    2017-02-24

    Players of coevolutionary games may update not only their strategies but also their networks of interaction. Based on interpreting the payoff of players as fitness, dynamic landscape models are proposed. The modeling procedure is carried out for Prisoner's Dilemma (PD) and Snowdrift (SD) games that both use either birth-death (BD) or death-birth (DB) strategy updating. The main focus is on using dynamic fitness landscapes as a mathematical model of coevolutionary game dynamics. Hence, an alternative tool for analyzing coevolutionary games becomes available, and landscape measures such as modality, ruggedness and information content can be computed and analyzed. In addition, fixation properties of the games and quantifiers characterizing the interaction networks are calculated numerically. Relations are established between landscape properties expressed by landscape measures and quantifiers of coevolutionary game dynamics such as fixation probabilities, fixation times and network properties.

  6. Pulsed infrared laser ablation and clinical applications

    NASA Astrophysics Data System (ADS)

    Chan, Kin Foong

    Sufficient light energy deposited in tissue can result in ablation and excessive thermal and mechanical damage to adjacent tissues. The goals of this research are to investigate the mechanisms of pulsed infrared laser ablation of tissue, to optimize laser parameters for minimizing unnecessary damage to healthy tissue, and to explore the potential of using pulsed infrared lasers for clinical applications, especially laser lithotripsy. A dual-channel optical low coherence reflectometer was implemented to measure the expansion and collapse velocities of a Q-switched Ho:YAG (λ = 2.12 μm) laser-induced cavitation in water. Cavitation wall velocities up to 11 m/s were measured with this technique, and the results were in fair agreement with those calculated from fast-flash photographic images. The dependence of ablation threshold fluence on calculus absorption was examined. Preliminary results indicated that the product of optical absorption and ablation threshold fluence, which is the heat of ablation, remained constant for a given urinary calculus type and laser pulse duration. An extended study examined the influence of optical absorption on pulsed infrared laser ablation. An analytical photothermal ablation model was applied and compared to experimental ablation results using an infrared free-electron laser at selected wavelengths between 2.12 μm and 6.45 μm Results were in good agreement with the model, and the ablation depths of urinary calculi were highly dependent upon the calculus optical absorption as well as light attenuation within the intrapulse ablation plume. An efficient wavelength for ablation corresponded to the wavelength of the Er:YAG laser (λ = 2.94 μm) suggested this laser should be examined for laser lithotripsy. Schlieren flash photography, acoustic transient measurements with a piezoelectric polyvinylidene-fluoride needle-hydrophone, mass loss measurements, and chemical analyses were employed to study the ablation mechanisms of the free

  7. Length-dependent changes in contractile dynamics are blunted due to cardiac myosin binding protein-C ablation

    PubMed Central

    Mamidi, Ranganath; Gresham, Kenneth S.; Stelzer, Julian E.

    2014-01-01

    dynamic XB behavior due to changes in SL. PMID:25520665

  8. Stirling Engine Dynamic System Modeling

    NASA Technical Reports Server (NTRS)

    Nakis, Christopher G.

    2004-01-01

    The Thermo-Mechanical systems branch at the Glenn Research Center focuses a large amount time on Stirling engines. These engines will be used on missions where solar power is inefficient, especially in deep space. I work with Tim Regan and Ed Lewandowski who are currently developing and validating a mathematical model for the Stirling engines. This model incorporates all aspects of the system including, mechanical, electrical and thermodynamic components. Modeling is done through Simplorer, a program capable of running simulations of the model. Once created and then proven to be accurate, a model is used for developing new ideas for engine design. My largest specific project involves varying key parameters in the model and quantifying the results. This can all be done relatively trouble-free with the help of Simplorer. Once the model is complete, Simplorer will do all the necessary calculations. The more complicated part of this project is determining which parameters to vary. Finding key parameters depends on the potential for a value to be independently altered in the design. For example, a change in one dimension may lead to a proportional change to the rest of the model, and no real progress is made. Also, the ability for a changed value to have a substantial impact on the outputs of the system is important. Results will be condensed into graphs and tables with the purpose of better communication and understanding of the data. With the changing of these parameters, a more optimal design can be created without having to purchase or build any models. Also, hours and hours of results can be simulated in minutes. In the long run, using mathematical models can save time and money. Along with this project, I have many other smaller assignments throughout the summer. My main goal is to assist in the processes of model development, validation and testing.

  9. Integrated dynamics modeling for supercavitating vehicle systems

    NASA Astrophysics Data System (ADS)

    Kim, Seonhong; Kim, Nakwan

    2015-06-01

    We have performed integrated dynamics modeling for a supercavitating vehicle. A 6-DOF equation of motion was constructed by defining the forces and moments acting on the supercavitating body surface that contacted water. The wetted area was obtained by calculating the cavity size and axis. Cavity dynamics were determined to obtain the cavity profile for calculating the wetted area. Subsequently, the forces and moments acting on each wetted part-the cavitator, fins, and vehicle body-were obtained by physical modeling. The planing force-the interaction force between the vehicle transom and cavity wall-was calculated using the apparent mass of the immersed vehicle transom. We integrated each model and constructed an equation of motion for the supercavitating system. We performed numerical simulations using the integrated dynamics model to analyze the characteristics of the supercavitating system and validate the modeling completeness. Our research enables the design of high-quality controllers and optimal supercavitating systems.

  10. Modeling cell shape and dynamics on micropatterns

    PubMed Central

    Albert, Philipp J.; Schwarz, Ulrich S.

    2016-01-01

    ABSTRACT Adhesive micropatterns have become a standard tool to study cells under defined conditions. Applications range from controlling the differentiation and fate of single cells to guiding the collective migration of cell sheets. In long-term experiments, single cell normalization is challenged by cell division. For all of these setups, mathematical models predicting cell shape and dynamics can guide pattern design. Here we review recent advances in predicting and explaining cell shape, traction forces and dynamics on micropatterns. Starting with contour models as the simplest approach to explain concave cell shapes, we move on to network and continuum descriptions as examples for static models. To describe dynamic processes, cellular Potts, vertex and phase field models can be used. Different types of model are appropriate to address different biological questions and together, they provide a versatile tool box to predict cell behavior on micropatterns. PMID:26838278

  11. Dynamic stiffness model of spherical parallel robots

    NASA Astrophysics Data System (ADS)

    Cammarata, Alessandro; Caliò, Ivo; D`Urso, Domenico; Greco, Annalisa; Lacagnina, Michele; Fichera, Gabriele

    2016-12-01

    A novel approach to study the elastodynamics of Spherical Parallel Robots is described through an exact dynamic model. Timoshenko arches are used to simulate flexible curved links while the base and mobile platforms are modelled as rigid bodies. Spatial joints are inherently included into the model without Lagrangian multipliers. At first, the equivalent dynamic stiffness matrix of each leg, made up of curved links joined by spatial joints, is derived; then these matrices are assembled to obtain the Global Dynamic Stiffness Matrix of the robot at a given pose. Actuator stiffness is also included into the model to verify its influence on vibrations and modes. The latter are found by applying the Wittrick-Williams algorithm. Finally, numerical simulations and direct comparison to commercial FE results are used to validate the proposed model.

  12. Lung Ablation: Whats New?

    PubMed

    Xiong, Lillian; Dupuy, Damian E

    2016-07-01

    Lung cancer had an estimated incidence of 221,200 in 2015, making up 13% of all cancer diagnoses. Tumor ablation is an important treatment option for nonsurgical lung cancer and pulmonary metastatic patients. Radiofrequency ablation has been used for over a decade with newer modalities, microwave ablation, cryoablation, and irreversible electroporation presenting as additional and possibly improved treatment options for patients. This minimally invasive therapy is best for small primary lesions or favorably located metastatic tumors. These technologies can offer palliation and sometimes cure of thoracic malignancies. This article discusses the current available technologies and techniques available for tumor ablation.

  13. Modeling Dynamic Regulatory Processes in Stroke.

    SciTech Connect

    McDermott, Jason E.; Jarman, Kenneth D.; Taylor, Ronald C.; Lancaster, Mary J.; Shankaran, Harish; Vartanian, Keri B.; Stevens, S.L.; Stenzel-Poore, Mary; Sanfilippo, Antonio P.

    2012-10-11

    The ability to examine in silico the behavior of biological systems can greatly accelerate the pace of discovery in disease pathologies, such as stroke, where in vivo experimentation is lengthy and costly. In this paper we describe an approach to in silico examination of blood genomic responses to neuroprotective agents and subsequent stroke through the development of dynamic models of the regulatory processes observed in the experimental gene expression data. First, we identified functional gene clusters from these data. Next, we derived ordinary differential equations (ODEs) relating regulators and functional clusters from the data. These ODEs were used to develop dynamic models that simulate the expression of regulated functional clusters using system dynamics as the modeling paradigm. The dynamic model has the considerable advantage of only requiring an initial starting state, and does not require measurement of regulatory influences at each time point in order to make accurate predictions. The manipulation of input model parameters, such as changing the magnitude of gene expression, made it possible to assess the behavior of the networks through time under varying conditions. We report that an optimized dynamic model can provide accurate predictions of overall system behavior under several different preconditioning paradigms.

  14. Component testing for dynamic model verification

    NASA Technical Reports Server (NTRS)

    Hasselman, T. K.; Chrostowski, J. D.

    1984-01-01

    Dynamic model verification is the process whereby an analytical model of a dynamic system is compared with experimental data, adjusted if necessary to bring it into agreement with the data, and then qualified for future use in predicting system response in a different dynamic environment. These are various ways to conduct model verification. The approach taken here employs Bayesian statistical parameter estimation. Unlike curve fitting, whose objective is to minimize the difference between some analytical function and a given quantity of test data (or curve), Bayesian estimation attempts also to minimize the difference between the parameter values of that funciton (the model) and their initial estimates, in a least squares sense. The objectives of dynamic model verification, therefore, are to produce a model which: (1) is in agreement with test data; (2) will assist in the interpretation of test data; (3) can be used to help verify a design; (4) will reliably predict performance; and (5) in the case of space structures, will facilitate dynamic control.

  15. Dynamics Simulation Model for Space Tethers

    NASA Technical Reports Server (NTRS)

    Levin, E. M.; Pearson, J.; Oldson, J. C.

    2006-01-01

    This document describes the development of an accurate model for the dynamics of the Momentum Exchange Electrodynamic Reboost (MXER) system. The MXER is a rotating tether about 100-km long in elliptical Earth orbit designed to catch payloads in low Earth orbit and throw them to geosynchronous orbit or to Earth escape. To ensure successful rendezvous between the MXER tip catcher and a payload, a high-fidelity model of the system dynamics is required. The model developed here quantifies the major environmental perturbations, and can predict the MXER tip position to within meters over one orbit.

  16. Dynamical modelling of coordinated multiple robot systems

    NASA Technical Reports Server (NTRS)

    Hayati, Samad

    1987-01-01

    The state of the art in the modeling of the dynamics of coordinated multiple robot manipulators is summarized and various problems related to this subject are discussed. It is recognized that dynamics modeling is a component used in the design of controllers for multiple cooperating robots. As such, the discussion addresses some problems related to the control of multiple robots. The techniques used to date in the modeling of closed kinematic chains are summarized. Various efforts made to date for the control of coordinated multiple manipulators is summarized.

  17. A stochastic evolutionary model for survival dynamics

    NASA Astrophysics Data System (ADS)

    Fenner, Trevor; Levene, Mark; Loizou, George

    2014-09-01

    The recent interest in human dynamics has led researchers to investigate the stochastic processes that explain human behaviour in different contexts. Here we propose a generative model to capture the essential dynamics of survival analysis, traditionally employed in clinical trials and reliability analysis in engineering. In our model, the only implicit assumption made is that the longer an actor has been in the system, the more likely it is to have failed. We derive a power-law distribution for the process and provide preliminary empirical evidence for the validity of the model from two well-known survival analysis data sets.

  18. A system dynamics model for communications networks

    NASA Astrophysics Data System (ADS)

    Awcock, A. J.; King, T. E. G.

    1985-09-01

    An abstract model of a communications network in system dynamics terminology is developed as implementation of this model by a FORTRAN program package developed at RSRE is discussed. The result of this work is a high-level simulation package in which the performance of adaptive routing algorithms and other network controls may be assessed for a network of arbitrary topology.

  19. Dynamical effects of overparametrization in nonlinear models

    NASA Astrophysics Data System (ADS)

    Aguirre, Luis Antonio; Billings, S. A.

    1995-01-01

    This paper is concemed with dynamical reconstruction for nonlinear systems. The effects of the driving function and of the complexity of a given representation on the bifurcation patter are investigated. It is shown that the use of different driving functions to excite the system may yield models with different bifurcation patterns. The complexity of the reconstructions considered is quantified by the embedding dimension and the number of estimated parameters. In this respect it appears that models which reproduce the original bifurcation behaviour are of limited complexity and that excessively complex models tend to induce ghost bifurcations and spurious dynamical regimes. Moreover, some results suggest that the effects of overparametrization on the global dynamical behaviour of a nonlinear model may be more deleterious than the presence of moderate noise levels. In order to precisely quantify the complexity of the reconstructions, global polynomials are used although the results are believed to apply to a much wider class of representations including neural networks.

  20. Magnetospheric dynamics from a low-dimensional nonlinear dynamics model

    NASA Astrophysics Data System (ADS)

    Doxas, I.; Horton, W.

    1999-05-01

    A physics based model for the coupled solar WIND-Magnetosphere-Ionosphere system (WINDMI) is described. The model is based on truncated descriptions of the collisionless microscopic energy transfer processes occurring in the quasineutral layer, and includes a thermal flux limit neglected in the Magnetohydrodynamic (MHD) closure of the moment equations. All dynamically relevant parameters of the model can be computed analytically. The system is both Kirchhoffian and Hamiltonian, ensuring that the power input from the solar wind is divided into physically realizable energy sub-components, a property not shared by data-based filters. The model provides a consistent mathematical formalism in which different models of the solar wind driver, ionospheric dissipation, global field configuration, and substorm trigger mechanism can be inserted, and the coupling between the different parts of the system investigated.

  1. A dynamical model for the Utricularia trap

    PubMed Central

    Llorens, Coraline; Argentina, Médéric; Bouret, Yann; Marmottant, Philippe; Vincent, Olivier

    2012-01-01

    We propose a model that captures the dynamics of a carnivorous plant, Utricularia inflata. This plant possesses tiny traps for capturing small aquatic animals. Glands pump water out of the trap, yielding a negative pressure difference between the plant and its surroundings. The trap door is set into a meta-stable state and opens quickly as an extra pressure is generated by the displacement of a potential prey. As the door opens, the pressure difference sucks the animal into the trap. We write an ODE model that captures all the physics at play. We show that the dynamics of the plant is quite similar to neuronal dynamics and we analyse the effect of a white noise on the dynamics of the trap. PMID:22859569

  2. Adaptation dynamics of the quasispecies model

    NASA Astrophysics Data System (ADS)

    Jain, Kavita

    2009-02-01

    We study the adaptation dynamics of an initially maladapted population evolving via the elementary processes of mutation and selection. The evolution occurs on rugged fitness landscapes which are defined on the multi-dimensional genotypic space and have many local peaks separated by low fitness valleys. We mainly focus on the Eigen's model that describes the deterministic dynamics of an infinite number of self-replicating molecules. In the stationary state, for small mutation rates such a population forms a {\\it quasispecies} which consists of the fittest genotype and its closely related mutants. The quasispecies dynamics on rugged fitness landscape follow a punctuated (or step-like) pattern in which a population jumps from a low fitness peak to a higher one, stays there for a considerable time before shifting the peak again and eventually reaches the global maximum of the fitness landscape. We calculate exactly several properties of this dynamical process within a simplified version of the quasispecies model.

  3. Modeling the Gas Dynamics Environment in a Subscale Solid Rocket Test Motor

    NASA Technical Reports Server (NTRS)

    Eaton, Andrew M.; Ewing, Mark E.; Bailey, Kirk M.; McCool, Alex (Technical Monitor)

    2001-01-01

    Subscale test motors are often used for the evaluation of solid rocket motor component materials such as internal insulation. These motors are useful for characterizing insulation performance behavior, screening insulation material candidates and obtaining material thermal and ablative property design data. One of the primary challenges associated with using subscale motors however, is the uncertainty involved when extrapolating the results to full-scale motor conditions. These uncertainties are related to differences in such phenomena as turbulent flow behavior and boundary layer development, propellant particle interactions with the wall, insulation off-gas mixing and thermochemical reactions with the bulk flow, radiation levels, material response to the local environment, and other anomalous flow conditions. In addition to the need for better understanding of physical mechanisms, there is also a need to better understand how to best simulate these phenomena using numerical modeling approaches such as computational fluid dynamics (CFD). To better understand and model interactions between major phenomena in a subscale test motor, a numerical study of the internal flow environment of a representative motor was performed. Simulation of the environment included not only gas dynamics, but two-phase flow modeling of entrained alumina particles like those found in an aluminized propellant, and offgassing from wall surfaces similar to an ablating insulation material. This work represents a starting point for establishing the internal environment of a subscale test motor using comprehensive modeling techniques, and lays the groundwork for improving the understanding of the applicability of subscale test data to full-scale motors. It was found that grid resolution, and inclusion of phenomena in addition to gas dynamics, such as two-phase and multi-component gas composition are all important factors that can effect the overall flow field predictions.

  4. Multiple applicator hepatic ablation with interstitial ultrasound devices: Theoretical and experimental investigation

    PubMed Central

    Prakash, Punit; Salgaonkar, Vasant A.; Clif Burdette, E.; Diederich, Chris J.

    2012-01-01

    Purpose: To evaluate multiple applicator implant configurations of interstitial ultrasound devices for large volume ablation of liver tumors. Methods: A 3D bioacoustic-thermal model using the finite element method was implemented to assess multiple applicator implant configurations for thermal ablation with interstitial ultrasound energy. Interstitial applicators consist of linear arrays of up to four 10 mm-long tubular ultrasound transducers, each under separate and dynamic power control, enclosed within a water-cooled delivery catheter (2.4 mm OD). The authors considered parallel implants with two and three applicators (clustered configuration), spaced 2–3 cm apart, to simulate open surgical placement. In addition, the authors considered two applicator implants with applicators converging and diverging at angles of ∼20°, 30°, and 45° to simulate percutaneous placement. Heating experiments (10–15 min) were performed and compared against simulations employing the same experimental parameters. To estimate the performance of parallel, multiple applicator configurations in an in vivo setting, simulations were performed taking into account a range of blood perfusion levels (0, 5, 12, and 15 kg m−3 s−1) that may occur in tumors of varying vascularity. The impact of tailoring the power supplied to individual transducer elements along the length of applicators is explored for applicators inserted in non-parallel (converging and diverging) configurations. Thermal dose (t43 > 240 min) and temperature thresholds (T > 52 °C) were used to define the ablation zones, with dynamic changes to tissue acoustic and thermal properties incorporated within the model. Results: Experiments in ex vivo bovine liver yielded ablation zones ranging between 4.0–5.6 cm × 3.2–4.9 cm, in cross section. Ablation zone dimensions predicted by simulations with similar parameters to the experiments were in close agreement (within 5 mm). Simulations of in vivo heating showed that 15

  5. Modeling hybrid perovskites by molecular dynamics

    NASA Astrophysics Data System (ADS)

    Mattoni, Alessandro; Filippetti, Alessio; Caddeo, Claudia

    2017-02-01

    The topical review describes the recent progress in the modeling of hybrid perovskites by molecular dynamics simulations. Hybrid perovskites and in particular methylammonium lead halide (MAPI) have a tremendous technological relevance representing the fastest-advancing solar material to date. They also represent the paradigm of an organic-inorganic crystalline material with some conceptual peculiarities: an inorganic semiconductor for what concerns the electronic and absorption properties with a hybrid and solution processable organic-inorganic body. After briefly explaining the basic concepts of ab initio and classical molecular dynamics, the model potential recently developed for hybrid perovskites is described together with its physical motivation as a simple ionic model able to reproduce the main dynamical properties of the material. Advantages and limits of the two strategies (either ab initio or classical) are discussed in comparison with the time and length scales (from pico to microsecond scale) necessary to comprehensively study the relevant properties of hybrid perovskites from molecular reorientations to electrocaloric effects. The state-of-the-art of the molecular dynamics modeling of hybrid perovskites is reviewed by focusing on a selection of showcase applications of methylammonium lead halide: molecular cations disorder; temperature evolution of vibrations; thermally activated defects diffusion; thermal transport. We finally discuss the perspectives in the modeling of hybrid perovskites by molecular dynamics.

  6. Modeling hybrid perovskites by molecular dynamics.

    PubMed

    Mattoni, Alessandro; Filippetti, Alessio; Caddeo, Claudia

    2017-02-01

    The topical review describes the recent progress in the modeling of hybrid perovskites by molecular dynamics simulations. Hybrid perovskites and in particular methylammonium lead halide (MAPI) have a tremendous technological relevance representing the fastest-advancing solar material to date. They also represent the paradigm of an organic-inorganic crystalline material with some conceptual peculiarities: an inorganic semiconductor for what concerns the electronic and absorption properties with a hybrid and solution processable organic-inorganic body. After briefly explaining the basic concepts of ab initio and classical molecular dynamics, the model potential recently developed for hybrid perovskites is described together with its physical motivation as a simple ionic model able to reproduce the main dynamical properties of the material. Advantages and limits of the two strategies (either ab initio or classical) are discussed in comparison with the time and length scales (from pico to microsecond scale) necessary to comprehensively study the relevant properties of hybrid perovskites from molecular reorientations to electrocaloric effects. The state-of-the-art of the molecular dynamics modeling of hybrid perovskites is reviewed by focusing on a selection of showcase applications of methylammonium lead halide: molecular cations disorder; temperature evolution of vibrations; thermally activated defects diffusion; thermal transport. We finally discuss the perspectives in the modeling of hybrid perovskites by molecular dynamics.

  7. Session 6: Dynamic Modeling and Systems Analysis

    NASA Technical Reports Server (NTRS)

    Csank, Jeffrey; Chapman, Jeffryes; May, Ryan

    2013-01-01

    These presentations cover some of the ongoing work in dynamic modeling and dynamic systems analysis. The first presentation discusses dynamic systems analysis and how to integrate dynamic performance information into the systems analysis. The ability to evaluate the dynamic performance of an engine design may allow tradeoffs between the dynamic performance and operability of a design resulting in a more efficient engine design. The second presentation discusses the Toolbox for Modeling and Analysis of Thermodynamic Systems (T-MATS). T-MATS is a Simulation system with a library containing the basic building blocks that can be used to create dynamic Thermodynamic Systems. Some of the key features include Turbo machinery components, such as turbines, compressors, etc., and basic control system blocks. T-MAT is written in the Matlab-Simulink environment and is open source software. The third presentation focuses on getting additional performance from the engine by allowing the limit regulators only to be active when a limit is danger of being violated. Typical aircraft engine control architecture is based on MINMAX scheme, which is designed to keep engine operating within prescribed mechanical/operational safety limits. Using a conditionally active min-max limit regulator scheme, additional performance can be gained by disabling non-relevant limit regulators

  8. Dispersive models describing mosquitoes’ population dynamics

    NASA Astrophysics Data System (ADS)

    Yamashita, W. M. S.; Takahashi, L. T.; Chapiro, G.

    2016-08-01

    The global incidences of dengue and, more recently, zica virus have increased the interest in studying and understanding the mosquito population dynamics. Understanding this dynamics is important for public health in countries where climatic and environmental conditions are favorable for the propagation of these diseases. This work is based on the study of nonlinear mathematical models dealing with the life cycle of the dengue mosquito using partial differential equations. We investigate the existence of traveling wave solutions using semi-analytical method combining dynamical systems techniques and numerical integration. Obtained solutions are validated through numerical simulations using finite difference schemes.

  9. Modeling the Dynamics of Compromised Networks

    SciTech Connect

    Soper, B; Merl, D M

    2011-09-12

    Accurate predictive models of compromised networks would contribute greatly to improving the effectiveness and efficiency of the detection and control of network attacks. Compartmental epidemiological models have been applied to modeling attack vectors such as viruses and worms. We extend the application of these models to capture a wider class of dynamics applicable to cyber security. By making basic assumptions regarding network topology we use multi-group epidemiological models and reaction rate kinetics to model the stochastic evolution of a compromised network. The Gillespie Algorithm is used to run simulations under a worst case scenario in which the intruder follows the basic connection rates of network traffic as a method of obfuscation.

  10. Modelling Martian surface channel dynamics

    NASA Astrophysics Data System (ADS)

    Coulthard, T. J.; Skinner, C.; Kim, J.; Schumann, G.; Neal, J. C.; Bates, P. D.

    2014-12-01

    Extensive and large surface channel features found at Athabasca and Kasei have previously been attributed to the erosional power of flowing water with palaeoflood discharges being estimated from the surface channel dimensions. However, in order for these channels to be alluvial there are several basic questions to be answered. Are water flows under Martian conditions capable of eroding the amounts of sediment required to leave these channels? Are our present estimates of palaeoflood discharge of correct magnitude to carry out this erosion? And are the channels a product of one or many flood events? Here, we use a numerical model (CAESAR-Lisflood) that links a two-dimensional hydrodynamic flow scheme to a sediment transport model to simulate fluvial morphodynamics in the Athabasca and Kasei regions. CAESAR-Lisflood has been successfully applied to simulating flooding, erosion and deposition on Earth in a number of locations, and allows the development of channels, bars, braids and other fluvial features to be modelled. The numerical scheme of the model was adapted to Martian conditions by adjusting gravity, drag co-efficient, roughness and grainsize terms. Preliminary findings indicate that fluvial erosion and deposition is capable of creating mega channel features found at these sites and that existing palaeflood estimates are commensurate with channel forming discharges for these features.

  11. Dynamical Modeling of Surface Tension

    NASA Technical Reports Server (NTRS)

    Brackbill, Jeremiah U.; Kothe, Douglas B.

    1996-01-01

    In a recent review it is said that free-surface flows 'represent some of the difficult remaining challenges in computational fluid dynamics'. There has been progress with the development of new approaches to treating interfaces, such as the level-set method and the improvement of older methods such as the VOF method. A common theme of many of the new developments has been the regularization of discontinuities at the interface. One example of this approach is the continuum surface force (CSF) formulation for surface tension, which replaces the surface stress given by Laplace's equation by an equivalent volume force. Here, we describe how CSF formulation might be made more useful. Specifically, we consider a derivation of the CSF equations from a minimization of surface energy as outlined by Jacqmin (1996). This reformulation suggests that if one eliminates the computation of curvature in terms of a unit normal vector, parasitic currents may be eliminated. For this reformulation to work, it is necessary that transition region thickness be controlled. Various means for this, in addition to the one discussed by Jacqmin (1996), are discussed.

  12. Automated planning of ablation targets in atrial fibrillation treatment

    NASA Astrophysics Data System (ADS)

    Keustermans, Johannes; De Buck, Stijn; Heidbüchel, Hein; Suetens, Paul

    2011-03-01

    Catheter based radio-frequency ablation is used as an invasive treatment of atrial fibrillation. This procedure is often guided by the use of 3D anatomical models obtained from CT, MRI or rotational angiography. During the intervention the operator accurately guides the catheter to prespecified target ablation lines. The planning stage, however, can be time consuming and operator dependent which is suboptimal both from a cost and health perspective. Therefore, we present a novel statistical model-based algorithm for locating ablation targets from 3D rotational angiography images. Based on a training data set of 20 patients, consisting of 3D rotational angiography images with 30 manually indicated ablation points, a statistical local appearance and shape model is built. The local appearance model is based on local image descriptors to capture the intensity patterns around each ablation point. The local shape model is constructed by embedding the ablation points in an undirected graph and imposing that each ablation point only interacts with its neighbors. Identifying the ablation points on a new 3D rotational angiography image is performed by proposing a set of possible candidate locations for each ablation point, as such, converting the problem into a labeling problem. The algorithm is validated using a leave-one-out-approach on the training data set, by computing the distance between the ablation lines obtained by the algorithm and the manually identified ablation points. The distance error is equal to 3.8+/-2.9 mm. As ablation lesion size is around 5-7 mm, automated planning of ablation targets by the presented approach is sufficiently accurate.

  13. Alternative models for cyclic lemming dynamics.

    PubMed

    Wang, Hao; Kuang, Yang

    2007-01-01

    Many natural population growths and interactions are affected by seasonal changes, suggesting that these natural population dynamics should be modeled by nonautonomous differential equations instead of autonomous differential equations. Through a series of carefully derived models of the well documented high-amplitude, large-period fluctuations of lemming populations, we argue that when appropriately formulated, autonomous differential equations may capture much of the desirable rich dynamics, such as the existence of a periodic solution with period and amplitude close to that of approximately periodic solutions produced by the more natural but mathematically daunt ing nonautonomous models. We start this series of models from the Barrow model, a well formulated model for the dynamics of food-lemming interaction at Point Barrow (Alaska, USA) with sufficient experimental data. Our work suggests that an autonomous system can indeed be a good approximation to the moss-lemming dynamics at Point Barrow. This, together with our bifurcation analysis, indicates that neither seasonal factors (expressed by time dependent moss growth rate and lemming death rate in the Barrow model) nor the moss growth rate and lemming death rate are the main culprits of the observed multi-year lemming cycles. We suspect that the main culprits may include high lemming predation rate, high lemming birth rate, and low lemming self-limitation rate.

  14. Nonlinear Dynamic Models in Advanced Life Support

    NASA Technical Reports Server (NTRS)

    Jones, Harry

    2002-01-01

    To facilitate analysis, ALS systems are often assumed to be linear and time invariant, but they usually have important nonlinear and dynamic aspects. Nonlinear dynamic behavior can be caused by time varying inputs, changes in system parameters, nonlinear system functions, closed loop feedback delays, and limits on buffer storage or processing rates. Dynamic models are usually cataloged according to the number of state variables. The simplest dynamic models are linear, using only integration, multiplication, addition, and subtraction of the state variables. A general linear model with only two state variables can produce all the possible dynamic behavior of linear systems with many state variables, including stability, oscillation, or exponential growth and decay. Linear systems can be described using mathematical analysis. Nonlinear dynamics can be fully explored only by computer simulations of models. Unexpected behavior is produced by simple models having only two or three state variables with simple mathematical relations between them. Closed loop feedback delays are a major source of system instability. Exceeding limits on buffer storage or processing rates forces systems to change operating mode. Different equilibrium points may be reached from different initial conditions. Instead of one stable equilibrium point, the system may have several equilibrium points, oscillate at different frequencies, or even behave chaotically, depending on the system inputs and initial conditions. The frequency spectrum of an output oscillation may contain harmonics and the sums and differences of input frequencies, but it may also contain a stable limit cycle oscillation not related to input frequencies. We must investigate the nonlinear dynamic aspects of advanced life support systems to understand and counter undesirable behavior.

  15. Sprayable lightweight ablative coating

    NASA Technical Reports Server (NTRS)

    Simpson, William G. (Inventor); Sharpe, Max H. (Inventor); Hill, William E. (Inventor)

    1991-01-01

    An improved lightweight, ablative coating is disclosed that may be spray applied and cured without the development of appreciable shrinkage cracks. The ablative mixture consists essentially of phenolic microballoons, hollow glass spheres, glass fibers, ground cork, a flexibilized resin binder, and an activated colloidal clay.

  16. Flapping Wing Flight Dynamic Modeling

    DTIC Science & Technology

    2011-08-22

    Hummingbird [5]. This particular study focuses on the diculty of determining what models are most impor- tant to consider when trying to accurately...Projects Agency TTO Document, 1996. [5] Nano Hummingbird , Website, 2011. [6] Fry, S. N., Sayaman, R., and Dickinson, M. H., The Aerodynamics of Free...and Jategaonkar, R. V., Evolution of Flight Vehicle System Identication, Journal of Aircraft , Vol. 33, 1996, pp. 928. [40] Hedrick, T. L

  17. Continuous Time Dynamic Topic Models

    DTIC Science & Technology

    2008-06-20

    called topics, can be used to explain the observed collection. LDA is a probabilistic extension of latent semantic indexing (LSI) [5] and probabilistic... latent semantic indexing (pLSI) [11]. Owing to its formal generative semantics, LDA has been extended and applied to authorship [19], email [15...Steyvers. Probabilistic topic models. In Latent Semantic Analysis: A Road to Meaning. 2006. [9] T. L. Griffiths and M. Steyvers. Finding scientific

  18. Feature Extraction for Structural Dynamics Model Validation

    SciTech Connect

    Farrar, Charles; Nishio, Mayuko; Hemez, Francois; Stull, Chris; Park, Gyuhae; Cornwell, Phil; Figueiredo, Eloi; Luscher, D. J.; Worden, Keith

    2016-01-13

    As structural dynamics becomes increasingly non-modal, stochastic and nonlinear, finite element model-updating technology must adopt the broader notions of model validation and uncertainty quantification. For example, particular re-sampling procedures must be implemented to propagate uncertainty through a forward calculation, and non-modal features must be defined to analyze nonlinear data sets. The latter topic is the focus of this report, but first, some more general comments regarding the concept of model validation will be discussed.

  19. The dynamic model of enterprise revenue management

    NASA Astrophysics Data System (ADS)

    Mitsel, A. A.; Kataev, M. Yu; Kozlov, S. V.; Korepanov, K. V.

    2017-01-01

    The article presents the dynamic model of enterprise revenue management. This model is based on the quadratic criterion and linear control law. The model is founded on multiple regression that links revenues with the financial performance of the enterprise. As a result, optimal management is obtained so as to provide the given enterprise revenue, namely, the values of financial indicators that ensure the planned profit of the organization are acquired.

  20. Dynamic exponents for potts model cluster algorithms

    NASA Astrophysics Data System (ADS)

    Coddington, Paul D.; Baillie, Clive F.

    We have studied the Swendsen-Wang and Wolff cluster update algorithms for the Ising model in 2, 3 and 4 dimensions. The data indicate simple relations between the specific heat and the Wolff autocorrelations, and between the magnetization and the Swendsen-Wang autocorrelations. This implies that the dynamic critical exponents are related to the static exponents of the Ising model. We also investigate the possibility of similar relationships for the Q-state Potts model.

  1. A dynamic conceptual model of care planning.

    PubMed

    Elf, Marie; Poutilova, Maria; Ohrn, Kerstin

    2007-12-01

    This article presents a conceptual model of the care planning process developed to identify the hypothetical links between structural, process and outcome factors important to the quality of the process. Based on existing literature, it was hypothesized that a thorough assessment of patients' health needs is an important prerequisite when making a rigorous diagnosis and preparing plans for various care interventions. Other important variables that are assumed to influence the quality of the process are the care culture and professional knowledge. The conceptual model was developed as a system dynamics causal loop diagram as a first essential step towards a computed model. System dynamics offers the potential to describe processes in a nonlinear, dynamic way and is suitable for exploring, comprehending, learning and communicating complex ideas about care processes.

  2. Dynamic Model for Life History of Scyphozoa

    PubMed Central

    Xie, Congbo; Fan, Meng; Wang, Xin; Chen, Ming

    2015-01-01

    A two-state life history model governed by ODEs is formulated to elucidate the population dynamics of jellyfish and to illuminate the triggering mechanism of its blooms. The polyp-medusa model admits trichotomous global dynamic scenarios: extinction, polyps survival only, and both survival. The population dynamics sensitively depend on several biotic and abiotic limiting factors such as substrate, temperature, and predation. The combination of temperature increase, substrate expansion, and predator diminishment acts synergistically to create a habitat that is more favorable for jellyfishes. Reducing artificial marine constructions, aiding predator populations, and directly controlling the jellyfish population would help to manage the jellyfish blooms. The theoretical analyses and numerical experiments yield several insights into the nature underlying the model and shed some new light on the general control strategy for jellyfish. PMID:26114642

  3. Dynamic Model for Life History of Scyphozoa.

    PubMed

    Xie, Congbo; Fan, Meng; Wang, Xin; Chen, Ming

    2015-01-01

    A two-state life history model governed by ODEs is formulated to elucidate the population dynamics of jellyfish and to illuminate the triggering mechanism of its blooms. The polyp-medusa model admits trichotomous global dynamic scenarios: extinction, polyps survival only, and both survival. The population dynamics sensitively depend on several biotic and abiotic limiting factors such as substrate, temperature, and predation. The combination of temperature increase, substrate expansion, and predator diminishment acts synergistically to create a habitat that is more favorable for jellyfishes. Reducing artificial marine constructions, aiding predator populations, and directly controlling the jellyfish population would help to manage the jellyfish blooms. The theoretical analyses and numerical experiments yield several insights into the nature underlying the model and shed some new light on the general control strategy for jellyfish.

  4. Dynamic reliability models with conditional proportional hazards.

    PubMed

    Hollander, M; Peña, E A

    1995-01-01

    A dynamic approach to the stochastic modelling of reliability systems is further explored. This modelling approach is particularly appropriate for load-sharing, software reliability, and multivariate failure-time models, where component failure characteristics are affected by their degree of use, amount of load, or extent of stresses experienced. This approach incorporates the intuitive notion that when a set of components in a coherent system fail at a certain time, there is a 'jump' from one structure function to another which governs the residual lifetimes of the remaining functioning components, and since the component lifetimes are intrinsically affected by the structure function which they constitute, then at such a failure time there should also be a jump in the stochastic structure of the lifetimes of the remaining components. For such dynamically-modelled systems, the stochastic characteristics of their jump times are studied. These properties of the jump times allow us to obtain the properties of the lifetime of the system. In particular, for a Markov dynamic model, specific expressions for the exact distribution function of the jump times are obtained for a general coherent system, a parallel system, and a series-parallel system. We derive a new family of distribution functions which describes the distributions of the jump times for a dynamically-modelled system.

  5. Dynamic modeling of solar dynamic components and systems

    NASA Astrophysics Data System (ADS)

    Hochstein, John I.; Korakianitis, T.

    1992-09-01

    The purpose of this grant was to support NASA in modeling efforts to predict the transient dynamic and thermodynamic response of the space station solar dynamic power generation system. In order to meet the initial schedule requirement of providing results in time to support installation of the system as part of the initial phase of space station, early efforts were executed with alacrity and often in parallel. Initially, methods to predict the transient response of a Rankine as well as a Brayton cycle were developed. Review of preliminary design concepts led NASA to select a regenerative gas-turbine cycle using a helium-xenon mixture as the working fluid and, from that point forward, the modeling effort focused exclusively on that system. Although initial project planning called for a three year period of performance, revised NASA schedules moved system installation to later and later phases of station deployment. Eventually, NASA selected to halt development of the solar dynamic power generation system for space station and to reduce support for this project to two-thirds of the original level.

  6. Record Dynamics and the Parking Lot Model for granular dynamics

    NASA Astrophysics Data System (ADS)

    Sibani, Paolo; Boettcher, Stefan

    Also known for its application to granular compaction (E. Ben-Naim et al., Physica D, 1998), the Parking Lot Model (PLM) describes the random parking of identical cars in a strip with no marked bays. In the thermally activated version considered, cars can be removed at an energy cost and, in thermal equilibrium, their average density increases as temperature decreases. However, equilibration at high density becomes exceedingly slow and the system enters an aging regime induced by a kinematic constraint, the fact that parked cars may not overlap. As parking an extra car reduces the available free space,the next parking event is even harder to achieve. Records in the number of parked cars mark the salient features of the dynamics and are shown to be well described by the log-Poisson statistics known from other glassy systems with record dynamics. Clusters of cars whose positions must be rearranged to make the next insertion possible have a length scale which grows logarithmically with age, while their life-time grows exponentially with size. The implications for a recent cluster model of colloidal dynamics,(S. Boettcher and P. Sibani, J. Phys.: Cond. Matter, 2011 N. Becker et al., J. Phys.: Cond. Matter, 2014) are discussed. Support rom the Villum Foundation is gratefully acknowledged.

  7. Dynamic Modeling of Solar Dynamic Components and Systems

    NASA Technical Reports Server (NTRS)

    Hochstein, John I.; Korakianitis, T.

    1992-01-01

    The purpose of this grant was to support NASA in modeling efforts to predict the transient dynamic and thermodynamic response of the space station solar dynamic power generation system. In order to meet the initial schedule requirement of providing results in time to support installation of the system as part of the initial phase of space station, early efforts were executed with alacrity and often in parallel. Initially, methods to predict the transient response of a Rankine as well as a Brayton cycle were developed. Review of preliminary design concepts led NASA to select a regenerative gas-turbine cycle using a helium-xenon mixture as the working fluid and, from that point forward, the modeling effort focused exclusively on that system. Although initial project planning called for a three year period of performance, revised NASA schedules moved system installation to later and later phases of station deployment. Eventually, NASA selected to halt development of the solar dynamic power generation system for space station and to reduce support for this project to two-thirds of the original level.

  8. Radiofrequency ablation of the basivertebral nerve as potential treatment of back pain: pathologic assessment in an ovine model (Invited Paper)

    NASA Astrophysics Data System (ADS)

    Hoopes, P. J.; Eskey, Cliff J.; Attawia, Mohammed; Patel, Samit J.; Ryan, T. P.; Pellegrino, Richard; Bergeron, Jeffrey A.

    2005-04-01

    Pathological involvement of the basivertebral nerve (BVN), an intraosseous vertebral nerve, may play a significant role in some forms of back pain. This study was designed to assess the feasibility and effects of thermal ablation of the lumbar basivertebral nerve in mature sheep. Sixteen adult female sheep weighing 65-80 kg were anesthetized and positioned for ventral recumbent surgery. Under fluoroscopic guidance, two bilarterally oposed 5mm active length rediofrequency (RF) electrodes (1.65mm diameter were perfutaneously placed in select lumbar vertebrae at a relative angle of 70 degrees with a 5 mm tip separation. The elctrodes were advanced to the region of the vertebral bodies which contained the BVN. A thermal dose of 95° C/720 seconds was administered. Animals were survived for 2, 14, 90, or 180 days post-treatment. Clinical, radiologic and pathologic investigations were performed to determine the effect of the heat on the BVN and associated tissues. Thermal damage to the basivertebral neurovascular bundle was characterized by early hemorrhage and necrosis, followed by inflammation and fibrosis. Although there wasa significant revascularization of the treated bone marow regions, there was no evidence of basivertebral nerve survival or regeneration regeneration. In addition to ablation of teh basivertebral nerovascular bundle, the areas receiving the greatest treatment demonstrated initial mild local osteolysis and demineralization of the vertebral body bone and regional depopulation of the vertebral bone marrow cellular elements. Significant bone remodeling in the affected areas had begun by 14 days post-treatment. Bone remodeling was characterized by conventional osteoblast proliferation, osteoid deposition, and mineralization. This study demonstrated the ability to accurately, reproducibly, and safely ablate the basivertebral nerve and neurovascular bundle in mature sheep using a fluoroscopically guided percutaneously delivered radiofrequency technique.

  9. Combination radiofrequency (RF) ablation and IV liposomal heat shock protein suppression: Reduced tumor growth and increased animal endpoint survival in a small animal tumor model

    PubMed Central

    Yang, Wei; Ahmed, Muneeb; Tasawwar, Beenish; Levchenko, Tatynana; Sawant, Rupa R.; Torchilin, Vladimir; Goldberg, S. Nahum

    2012-01-01

    Background To investigate the effect of IV liposomal quercetin (a known down-regulator of heat shock proteins) alone and with liposomal doxorubicin on tumor growth and end-point survival when combined with radiofrequency (RF) tumor ablation in a rat tumor model. Methods Solitary subcutaneous R3230 mammary adenocarcinoma tumors (1.3–1.5 cm) were implanted in 48 female Fischer rats. Initially, 32 tumors (n=8, each group) were randomized into four experimental groups: (a) conventional monopolar RF alone (70°C for 5 min), (b) IV liposomal quercetin alone (1 mg/kg), (c) IV liposomal quercetin followed 24hr later with RF, and (d) no treatment. Next, 16 additional tumors were randomized into two groups (n=8, each) that received a combined RF and liposomal doxorubicin (15 min post-RF, 8 mg/kg) either with or without liposomal quercetin. Kaplan-Meier survival analysis was performed using a tumor diameter of 3.0 cm as the defined survival endpoint. Results Differences in endpoint survival and tumor doubling time among the groups were highly significant (P<0.001). Endpoint survivals were 12.5±2.2 days for the control group, 16.6±2.9 days for tumors treated with RF alone, 15.5±2.1days for tumors treated with liposomal quercetin alone, and 22.0±3.9 days with combined RF and quercetin. Additionally, combination quercetin/RF/doxorubicin therapy resulted in the longest survival (48.3±20.4 days), followed by RF/doxorubicin (29.9±3.8 days). Conclusions IV liposomal quercetin in combination with RF ablation reduces tumor growth rates and improves animal endpoint survival. Further increases in endpoint survival can be seen by adding an additional anti-tumor adjuvant agent liposomal doxorubicin. This suggests that targeting several post-ablation processes with multi-drug nanotherapies can increase overall ablation efficacy. PMID:22230341

  10. Dynamical properties of the Rabi model

    NASA Astrophysics Data System (ADS)

    Hu, Binglu; Zhou, Huili; Chen, Shujie; Xianlong, Gao; Wang, Kelin

    2017-02-01

    We study the dynamical properties of the quantum Rabi model using a systematic expansion method. Based on the observation that the parity symmetry of the Rabi model is kept during evolution of the states, we decompose the initial state and the time-dependent one into positive and negative parity parts expanded by superposition of the coherent states. The evolutions of the corresponding positive and the negative parities are obtained, in which the expansion coefficients in the dynamical equations are known from the derived recurrence relation.

  11. Robot arm dynamic model reduction for control

    NASA Technical Reports Server (NTRS)

    Bejczy, A. K.; Lee, S.

    1983-01-01

    General methods are described by which the mathematical complexities of explicit and exact state equations of robot arms can be reduced to a simplified and compact state equation representation without introducing significant errors into the robot arm dynamic model. The model reduction methods are based on homogeneous coordinates and on the Langrangian algorithm for robot arm dynamics, and utilize matrix, vector and numeric analysis techniques. The derivation of differential vector representation of centripetal and Coriolis forces which has not yet been established in the literature is presented.

  12. Dynamic models of Fabry-Perot interferometers.

    PubMed

    Redding, David; Regehr, Martin; Sievers, Lisa

    2002-05-20

    Long-baseline, high-finesse Fabry-Perot interferometers can be used to make distance measurements that are precise enough to detect gravity waves. This level of sensitivity is achieved in part when the interferometer mirrors are isolated dynamically, with pendulum mounts and high-bandwidth cavity length control servos to reduce the effects of seismic noise. We present dynamical models of the cavity fields and signals of Fabry-Perot interferometers for use in the design and evaluation of length control systems for gravity-wave detectors. Models are described and compared with experimental data.

  13. Quantum model for the price dynamics

    NASA Astrophysics Data System (ADS)

    Choustova, Olga

    2008-10-01

    We apply methods of quantum mechanics to mathematical modelling of price dynamics in a financial market. We propose to describe behavioral financial factors (e.g., expectations of traders) by using the pilot wave (Bohmian) model of quantum mechanics. Our model is a quantum-like model of the financial market, cf. with works of W. Segal, I.E. Segal, E. Haven. In this paper we study the problem of smoothness of price-trajectories in the Bohmian financial model. We show that even the smooth evolution of the financial pilot wave [psi](t,x) (representing expectations of traders) can induce jumps of prices of shares.

  14. VUV 157nm laser ablation of spherical particles and modelling of whispering gallery mode optical antenna structures

    SciTech Connect

    Walton, C. D.; Cockcroft, S.; Metheringham, W. J.

    2012-07-30

    We report on VUV 157nm F{sub 2} laser irradiation of CR-39 polymer substrates that have been intentionally seeded with spherical glass particles. We discuss the importance of adhesive forces for realizing spherical cavity structures by laser ablation. Strong optical absorption at 157nm in CR-39 enables precise control of pedestal height by controlling the laser fluence and the number of laser pulses. Resonant modes for free-standing spherical cavities have been calculated and we discuss briefly the potential applications for use as optical sources on-board lab-on-chip devices.

  15. Modeling emotional dynamics : currency versus field.

    SciTech Connect

    Sallach, D .L.; Decision and Information Sciences; Univ. of Chicago

    2008-08-01

    Randall Collins has introduced a simplified model of emotional dynamics in which emotional energy, heightened and focused by interaction rituals, serves as a common denominator for social exchange: a generic form of currency, except that it is active in a far broader range of social transactions. While the scope of this theory is attractive, the specifics of the model remain unconvincing. After a critical assessment of the currency theory of emotion, a field model of emotion is introduced that adds expressiveness by locating emotional valence within its cognitive context, thereby creating an integrated orientation field. The result is a model which claims less in the way of motivational specificity, but is more satisfactory in modeling the dynamic interaction between cognitive and emotional orientations at both individual and social levels.

  16. Dynamic model for the popularity of websites.

    PubMed

    Lee, Chang-Yong; Kim, Seungwhan

    2002-03-01

    In this paper, we have studied a dynamic model to explain the observed characteristics of websites in the World Wide Web. The dynamic model consists of the self-growth term for each website and the external force term acting on the website. With simulations of the model, we can explain most of the important characteristics of websites. These characteristics include a power-law distribution of the number of visitors to websites, fluctuation in the fractional growth of individual websites, and the relationship between the age and the popularity of the websites. We also investigated a few variants of the model and showed that the ingredients included in the model adequately explain the behavior of the websites.

  17. Dynamic model for the popularity of websites

    NASA Astrophysics Data System (ADS)

    Lee, Chang-Yong; Kim, Seungwhan

    2002-03-01

    In this paper, we have studied a dynamic model to explain the observed characteristics of websites in the World Wide Web. The dynamic model consists of the self-growth term for each website and the external force term acting on the website. With simulations of the model, we can explain most of the important characteristics of websites. These characteristics include a power-law distribution of the number of visitors to websites, fluctuation in the fractional growth of individual websites, and the relationship between the age and the popularity of the websites. We also investigated a few variants of the model and showed that the ingredients included in the model adequately explain the behavior of the websites.

  18. BDI-modelling of complex intracellular dynamics.

    PubMed

    Jonker, C M; Snoep, J L; Treur, J; Westerhoff, H V; Wijngaards, W C A

    2008-03-07

    A BDI-based continuous-time modelling approach for intracellular dynamics is presented. It is shown how temporalized BDI-models make it possible to model intracellular biochemical processes as decision processes. By abstracting from some of the details of the biochemical pathways, the model achieves understanding in nearly intuitive terms, without losing veracity: classical intentional state properties such as beliefs, desires and intentions are founded in reality through precise biochemical relations. In an extensive example, the complex regulation of Escherichia coli vis-à-vis lactose, glucose and oxygen is simulated as a discrete-state, continuous-time temporal decision manager. Thus a bridge is introduced between two different scientific areas: the area of BDI-modelling and the area of intracellular dynamics.

  19. Neutron-skin effects in isobaric yield ratios for mirror nuclei in a statistical abrasion-ablation model

    NASA Astrophysics Data System (ADS)

    Ma, Chun-Wang; Wei, Hui-Ling; Ma, Yu-Gang

    2013-10-01

    Background: The isobaric yield ratio for mirror nuclei [IYR(m)] in heavy-ion collisions, which is assumed to depend linearly on x=2(Z-1)/A1/3 of a fragment, is applied to study some coefficients of the energy terms in the binding energy, as well as the difference between the chemical potentials of a neutron and proton. It is found that the IYR(m) has a systematic dependence on the reaction, which has been explained as the volume and/or the isospin effects in previous studies. However, neither the volume nor the isospin effects can fully interpret the data.Purpose: We suppose that the IYR(m) depends on the neutron-skin thickness (δnp) of the projectile, and check the idea of whether the neutron-skin thickness effects can fully explain the systematic dependence of the IYR(m).Methods: A modified statistical abrasion-ablation model is used to calculate the reactions induced by projectiles of three series: (1) the calcium isotopes from 36Ca to 56Ca as projectiles with different limitations on the impact parameters (bmax) to show the volume effects according to bmax; (2) the A=45 isobars as the projectiles having different isospins and δnp; and (3) projectiles having similar δnp to show whether the IYR(m) depends on the volume or the isospin of the projectile.Results: The IYR(m) shows a distribution of a linear part in the small-x fragments, and a nonlinear part in the large-x fragments. The linear part of IYR(m) is fitted. (1) In the calcium isotopic reactions, the IYR(m) depends on the isospin or the volume of the projectile, but δnp greatly influences the nonlinear part of the IYR(m). The IYR(m) does not depend on the colliding source in reactions of small bmax for the nonneutron-rich projectiles, and does not depend on the collision sources in reactions by the neutron-rich projectiles. (2) In reactions of the A=45 isobars, though IYR(m) depends on the isospin of projectile, IYR(m) shows small dependence on isospin if δnp>0. (3) In the reactions of projectiles

  20. Dynamic Model Averaging in Large Model Spaces Using Dynamic Occam’s Window*

    PubMed Central

    Onorante, Luca; Raftery, Adrian E.

    2015-01-01

    Bayesian model averaging has become a widely used approach to accounting for uncertainty about the structural form of the model generating the data. When data arrive sequentially and the generating model can change over time, Dynamic Model Averaging (DMA) extends model averaging to deal with this situation. Often in macroeconomics, however, many candidate explanatory variables are available and the number of possible models becomes too large for DMA to be applied in its original form. We propose a new method for this situation which allows us to perform DMA without considering the whole model space, but using a subset of models and dynamically optimizing the choice of models at each point in time. This yields a dynamic form of Occam’s window. We evaluate the method in the context of the problem of nowcasting GDP in the Euro area. We find that its forecasting performance compares well with that of other methods. PMID:26917859

  1. Modeling biological pathway dynamics with timed automata.

    PubMed

    Schivo, Stefano; Scholma, Jetse; Wanders, Brend; Urquidi Camacho, Ricardo A; van der Vet, Paul E; Karperien, Marcel; Langerak, Rom; van de Pol, Jaco; Post, Janine N

    2014-05-01

    Living cells are constantly subjected to a plethora of environmental stimuli that require integration into an appropriate cellular response. This integration takes place through signal transduction events that form tightly interconnected networks. The understanding of these networks requires capturing their dynamics through computational support and models. ANIMO (analysis of Networks with Interactive Modeling) is a tool that enables the construction and exploration of executable models of biological networks, helping to derive hypotheses and to plan wet-lab experiments. The tool is based on the formalism of Timed Automata, which can be analyzed via the UPPAAL model checker. Thanks to Timed Automata, we can provide a formal semantics for the domain-specific language used to represent signaling networks. This enforces precision and uniformity in the definition of signaling pathways, contributing to the integration of isolated signaling events into complex network models. We propose an approach to discretization of reaction kinetics that allows us to efficiently use UPPAAL as the computational engine to explore the dynamic behavior of the network of interest. A user-friendly interface hides the use of Timed Automata from the user, while keeping the expressive power intact. Abstraction to single-parameter kinetics speeds up construction of models that remain faithful enough to provide meaningful insight. The resulting dynamic behavior of the network components is displayed graphically, allowing for an intuitive and interactive modeling experience.

  2. Convection-enhanced delivery of topotecan into a PDGF-driven model of glioblastoma prolongs survival, ablates tumor initiating cells and recruited glial progenitors

    PubMed Central

    Lopez, Kim A.; Tannenbaum, Aaron M.; Assanah, Marcela C.; Linskey, Katy; Yun, Jonathan; Kangarlu, Alayar; Gil, Orlando D.; Canoll, Peter; Bruce, Jeffrey N.

    2011-01-01

    The contribution of microenvironment to tumor growth has important implications for optimizing chemotherapeutic response and understanding the biology of recurrent tumors. In this study, we tested the effects of locally administered topotecan on a rat model of glioblastoma that is induced by intracerebral injection of PDGF-IRES-GFP-expressing retrovirus, we treated the tumors by convection-enhanced delivery (CED) of topotecan (136 μM) for 1, 4, or 7 days and then characterized the effects on both the retrovirus-transformed tumor cells (GFP+ cells) as well as the uninfected glial progenitor cells (GFP- cells) that are recruited to the tumor. Topotecan treatment reduced GFP+ cells ~10-fold and recruited progenitors by ~80-fold while providing a significant survival advantage that improved with greater treatment duration. Regions of glial progenitor ablation occurred corresponding to the anatomical distribution of topotecan as predicted by MRI of a surrogate tracer. Histopathologic changes in recurrent tumors point to a decrease in recruitment, most likely due to the chemotherapeutic ablation of the recruitable progenitor pool. PMID:21464045

  3. Synthesis and characterization of gold graphene composite with dyes as model substrates for decolorization: a surfactant free laser ablation approach.

    PubMed

    Sai Siddhardha, R S; Lakshman Kumar, V; Kaniyoor, Adarsh; Sai Muthukumar, V; Ramaprabhu, S; Podila, Ramakrishna; Rao, A M; Ramamurthy, Sai Sathish

    2014-12-10

    A facile surfactant free laser ablation mediated synthesis (LAMS) of gold-graphene composite is reported here. The material was characterized using transmission electron microscopy, field emission scanning electron microscopy, energy dispersive X-ray spectroscopy, powdered X-ray diffraction, Raman spectroscopy, Zeta potential measurements and UV-Visible spectroscopic techniques. The as-synthesized gold-graphene composite was effectively utilized as catalyst for decolorization of 4 important textile and laser dyes. The integration of gold nanoparticles (AuNPs) with high surface area graphene has enhanced the catalytic activity of AuNPs. This enhanced activity is attributed to the synergistic interplay of pristine gold's electronic relay and π-π stacking of graphene with the dyes. This is evident when the Rhodamine B (RB) reduction rate of the composite is nearly twice faster than that of commercial citrate capped AuNPs of similar size. In case of Methylene blue (MB) the rate of reduction is 17,000 times faster than uncatalyzed reaction. This synthetic method opens door to laser ablation based fabrication of metal catalysts on graphene for improved performance without the aid of linkers and surfactants.

  4. Synthesis and characterization of gold graphene composite with dyes as model substrates for decolorization: A surfactant free laser ablation approach

    NASA Astrophysics Data System (ADS)

    Sai Siddhardha, R. S.; Lakshman Kumar, V.; Kaniyoor, Adarsh; Sai Muthukumar, V.; Ramaprabhu, S.; Podila, Ramakrishna; Rao, A. M.; Ramamurthy, Sai Sathish

    2014-12-01

    A facile surfactant free laser ablation mediated synthesis (LAMS) of gold-graphene composite is reported here. The material was characterized using transmission electron microscopy, field emission scanning electron microscopy, energy dispersive X-ray spectroscopy, powdered X-ray diffraction, Raman spectroscopy, Zeta potential measurements and UV-Visible spectroscopic techniques. The as-synthesized gold-graphene composite was effectively utilized as catalyst for decolorization of 4 important textile and laser dyes. The integration of gold nanoparticles (AuNPs) with high surface area graphene has enhanced the catalytic activity of AuNPs. This enhanced activity is attributed to the synergistic interplay of pristine gold's electronic relay and π-π stacking of graphene with the dyes. This is evident when the Rhodamine B (RB) reduction rate of the composite is nearly twice faster than that of commercial citrate capped AuNPs of similar size. In case of Methylene blue (MB) the rate of reduction is 17,000 times faster than uncatalyzed reaction. This synthetic method opens door to laser ablation based fabrication of metal catalysts on graphene for improved performance without the aid of linkers and surfactants.

  5. Tumor Ablation and Nanotechnology

    PubMed Central

    Manthe, Rachel L.; Foy, Susan P.; Krishnamurthy, Nishanth; Sharma, Blanka; Labhasetwar, Vinod

    2010-01-01

    Next to surgical resection, tumor ablation is a commonly used intervention in the treatment of solid tumors. Tumor ablation methods include thermal therapies, photodynamic therapy, and reactive oxygen species (ROS) producing agents. Thermal therapies induce tumor cell death via thermal energy and include radiofrequency, microwave, high intensity focused ultrasound, and cryoablation. Photodynamic therapy and ROS producing agents cause increased oxidative stress in tumor cells leading to apoptosis. While these therapies are safe and viable alternatives when resection of malignancies is not feasible, they do have associated limitations that prevent their widespread use in clinical applications. To improve the efficacy of these treatments, nanoparticles are being studied in combination with nonsurgical ablation regimens. In addition to better thermal effect on tumor ablation, nanoparticles can deliver anticancer therapeutics that show synergistic anti-tumor effect in the presence of heat and can also be imaged to achieve precision in therapy. Understanding the molecular mechanism of nanoparticle-mediated tumor ablation could further help engineer nanoparticles of appropriate composition and properties to synergize the ablation effect. This review aims to explore the various types of nonsurgical tumor ablation methods currently used in cancer treatment and potential improvements by nanotechnology applications. PMID:20866097

  6. Polarizable protein model for Dissipative Particle Dynamics

    NASA Astrophysics Data System (ADS)

    Peter, Emanuel; Lykov, Kirill; Pivkin, Igor

    2015-11-01

    In this talk, we present a novel polarizable protein model for the Dissipative Particle Dynamics (DPD) simulation technique, a coarse-grained particle-based method widely used in modeling of fluid systems at the mesoscale. We employ long-range electrostatics and Drude oscillators in combination with a newly developed polarizable water model. The protein in our model is resembled by a polarizable backbone and a simplified representation of the sidechains. We define the model parameters using the experimental structures of 2 proteins: TrpZip2 and TrpCage. We validate the model on folding of five other proteins and demonstrate that it successfully predicts folding of these proteins into their native conformations. As a perspective of this model, we will give a short outlook on simulations of protein aggregation in the bulk and near a model membrane, a relevant process in several Amyloid diseases, e.g. Alzheimer's and Diabetes II.

  7. Solvable model for polymorphic dynamics of biofilaments.

    PubMed

    Mohrbach, Hervé; Kulić, Igor M

    2012-03-01

    We investigate an analytically tractable toy model for thermally induced polymorphic dynamics of cooperatively rearranging biofilaments-like microtubules. The proposed four-block model, which can be seen as a coarse-grained approximation of the full polymorphic tube model, permits a complete analytical treatment of all thermodynamic properties including correlation functions and angular Fourier mode distributions. Due to its mathematical tractability the model straightforwardly leads to some physical insights in recently discussed phenomena like the "length dependent persistence length." We show that a polymorphic filament can disguise itself as a classical worm-like chain on small and on large scales and yet display distinct anomalous tell-tale features indicating an inner switching dynamics on intermediate length scales.

  8. The quantum Rabi model: solution and dynamics

    NASA Astrophysics Data System (ADS)

    Xie, Qiongtao; Zhong, Honghua; Batchelor, Murray T.; Lee, Chaohong

    2017-03-01

    This article presents a review of recent developments on various aspects of the quantum Rabi model. Particular emphasis is given on the exact analytic solution obtained in terms of confluent Heun functions. The analytic solutions for various generalisations of the quantum Rabi model are also discussed. Results are also reviewed on the level statistics and the dynamics of the quantum Rabi model. The article concludes with an introductory overview of several experimental realisations of the quantum Rabi model. An outlook towards future developments is also given.

  9. Modeling of Reactor Kinetics and Dynamics

    SciTech Connect

    Matthew Johnson; Scott Lucas; Pavel Tsvetkov

    2010-09-01

    In order to model a full fuel cycle in a nuclear reactor, it is necessary to simulate the short time-scale kinetic behavior of the reactor as well as the long time-scale dynamics that occur with fuel burnup. The former is modeled using the point kinetics equations, while the latter is modeled by coupling fuel burnup equations with the kinetics equations. When the equations are solved simultaneously with a nonlinear equation solver, the end result is a code with the unique capability of modeling transients at any time during a fuel cycle.

  10. Developmental Stages in Dynamic Plant Growth Models

    NASA Astrophysics Data System (ADS)

    Maclean, Heather; Dochain, Denis; Waters, Geoff; Stasiak, Michael; Dixon, Mike; Van Der Straeten, Dominique

    2011-09-01

    During the growth of red beet plants in a closed environment plant growth chamber, a change in metabolism was observed (decreasing photosynthetic quotient) which was not predicted by a previously developed simple dynamic model of photosynthesis and respiration reactions. The incorporation of developmental stages into the model allowed for the representation of this change in metabolism without adding unnecessary complexity. Developmental stages were implemented by dividing the model into two successive sub-models with independent yields. The transition between the phases was detected based on online measurements. Results showed an accurate prediction of carbon dioxide and oxygen fluxes.

  11. Dynamic model of the Earth's upper atmosphere

    NASA Technical Reports Server (NTRS)

    Slowey, J. W.

    1984-01-01

    An initial modification to the MSF/J70 Thermospheric Model, in which the variations due to sudden geomagnetic disturbances upon the Earth's upper atmospheric density structure were modeled is presented. This dynamic model of the geomagnetic variation included is an improved version of one which SAO developed from the analysis of the ESRO 4 mass spectrometer data that was incorporated in the Jacchia 1977 model. The variation with geomagnetic local time as well as with geomagnetic latitude are included, and also the effects due to disturbance of the temperature profiles in the region of energy deposition.

  12. Modeling the Hydrogen Bond within Molecular Dynamics

    ERIC Educational Resources Information Center

    Lykos, Peter

    2004-01-01

    The structure of a hydrogen bond is elucidated within the framework of molecular dynamics based on the model of Rahman and Stillinger (R-S) liquid water treatment. Thus, undergraduates are exposed to the powerful but simple use of classical mechanics to solid objects from a molecular viewpoint.

  13. Modeling of tower relief dynamics: Part 2

    SciTech Connect

    Cassata, J.R.; Dasgupta, S.; Gandhi, S.L. )

    1993-11-01

    Dynamic simulations of individual towers or systems of distillations columns overcome limitations of steady-state models by rigorously determining dynamic responses. These will lead to a realistic quantification of relief header and flare system load and identify the design-setting relief scenario. Determination of distillation tower relief loads based on steady-state simulations or recognized methods of approximation can lead to over designing relief systems by large margins. This can result in unnecessary capital expenditure for relief headers and flare systems that can significantly alter the economics of a proposed project. Such overly conservative requirements may even cause potentially attractive projects to be unnecessarily canceled. In addition, approximate methods or analyses based on steady-state simulations sometimes do not identify the design-setting relief mode. Part 1 introduced the PRV and tower dynamic models. Different strategies were shown that can simplify these models. These strategies include tower segmentation, tray lumping and component lumping. Two case studies illustrate the advantages of dynamic models. The two studies are a depentanizer tower relief study and a delthanizer tower relief study.

  14. DYNAMIC LANDSCAPES, STABILITY AND ECOLOGICAL MODELING

    EPA Science Inventory

    The image of a ball rolling along a series of hills and valleys is an effective heuristic by which to communicate stability concepts in ecology. However, the dynamics of this landscape model have little to do with ecological systems. Other landscape representations, however, are ...

  15. Model Of Neural Network With Creative Dynamics

    NASA Technical Reports Server (NTRS)

    Zak, Michail; Barhen, Jacob

    1993-01-01

    Paper presents analysis of mathematical model of one-neuron/one-synapse neural network featuring coupled activation and learning dynamics and parametrical periodic excitation. Demonstrates self-programming, partly random behavior of suitable designed neural network; believed to be related to spontaneity and creativity of biological neural networks.

  16. Population mixture model for nonlinear telomere dynamics

    NASA Astrophysics Data System (ADS)

    Itzkovitz, Shalev; Shlush, Liran I.; Gluck, Dan; Skorecki, Karl

    2008-12-01

    Telomeres are DNA repeats protecting chromosomal ends which shorten with each cell division, eventually leading to cessation of cell growth. We present a population mixture model that predicts an exponential decrease in telomere length with time. We analytically solve the dynamics of the telomere length distribution. The model provides an excellent fit to available telomere data and accounts for the previously unexplained observation of telomere elongation following stress and bone marrow transplantation, thereby providing insight into the nature of the telomere clock.

  17. Modelling Subduction Dynamics: The South American Salsa

    NASA Astrophysics Data System (ADS)

    Hale, A. J.; Shephard, G.; Müller, D.; Liu, L.; Gurnis, M.

    2009-12-01

    Plate kinematic and seismic tomography models imply a gradual overriding of the Phoenix and Farallon slabs by the westward movement of the South American plate. This westward translation over the subducted slabs, and the currently subducting Nazca Plate, is expected to generate a dynamic surface topography effect, leading to time-progressive vertical motions and tilting of sedimentary basins and their hinterlands. We have set up a workflow to model these processes including ground-truthing with geological and geophysical data. A combination of geodynamic modelling software, CitcomS, GPlates (gplates.org) software and the Generic Mapping Tools (GMT) facilitates the modelling and visualisation of linked plate kinematics and mantle convection processes. The CitcomS software also allows us to alternatively use forward models, backward models, or combined forward and adjoint models. Forward models are driven by an imposed plate kinematic model and assumed initial subdution structure, whereas backwards models use mantle tomography as an input and run the model backwards by reversing the gravity field. Similarly, adjoint models use tomography as input, but iterate backwards and forwards in time to reach convergence upon present-day mantle structures. Model outputs include time-dependent mantle temperature, viscosity, and surface dynamic topography. Forward model results show that slab evolution under South America are strongly driven by the age of the subducting lithosphere. Hence, we can simulate flat-slab subduction and in regions close to the Chile triple junction we see a slab window developing, detaching older slab material from more recently subducted material. However, the forward model relies on an accurate description of the initial slab geometry at 140Ma to generate the initial slab pull. Forward and adjoint model results both suggest an alternative mechanism for major Miocene changes in paleo-Amazon river drainage. An eastward-sweeping negative dynamic

  18. Feature extraction for structural dynamics model validation

    SciTech Connect

    Hemez, Francois; Farrar, Charles; Park, Gyuhae; Nishio, Mayuko; Worden, Keith; Takeda, Nobuo

    2010-11-08

    This study focuses on defining and comparing response features that can be used for structural dynamics model validation studies. Features extracted from dynamic responses obtained analytically or experimentally, such as basic signal statistics, frequency spectra, and estimated time-series models, can be used to compare characteristics of structural system dynamics. By comparing those response features extracted from experimental data and numerical outputs, validation and uncertainty quantification of numerical model containing uncertain parameters can be realized. In this study, the applicability of some response features to model validation is first discussed using measured data from a simple test-bed structure and the associated numerical simulations of these experiments. issues that must be considered were sensitivity, dimensionality, type of response, and presence or absence of measurement noise in the response. Furthermore, we illustrate a comparison method of multivariate feature vectors for statistical model validation. Results show that the outlier detection technique using the Mahalanobis distance metric can be used as an effective and quantifiable technique for selecting appropriate model parameters. However, in this process, one must not only consider the sensitivity of the features being used, but also correlation of the parameters being compared.

  19. Modelling the dynamic response of Jakobshavn Isbræ, West Greenland, to calving rate perturbations

    NASA Astrophysics Data System (ADS)

    Bondzio, J. H.; Seroussi, H.; Morlighem, M.; Kleiner, T.; Rückamp, M.; Humbert, A.; Larour, E.

    2015-10-01

    Calving is a major means of ice discharge of the Antarctic and Greenland Ice Sheets. The breaking off of icebergs changes the ice front configuration of marine terminating glaciers, which affects the stress regime of their upstream areas. Recent observations show the close correlation between the ice front position and the behaviour of many outlet glaciers. However, modelling of a glacier subject to calving poses various challenges. No universal calving rate parametrisation is known, and tracking of a moving ice front and the related boundary conditions in two or three spatial dimensions is non-trivial. Here, we present the theoretical and technical framework for a Level-Set Method, an implicit boundary tracking scheme, which we implemented into the Ice Sheet System Model (ISSM). The scheme allows us to study the dynamic response of a drainage basin to user-defined front ablation rates. We apply the method in a suite of experiments to Jakobshavn Isbræ, a major marine terminating outlet glacier of the western Greenland Ice Sheet. The model robustly reproduces the high sensitivity of the glacier to frontal ablation in form of calving. We find that enhanced calving is able to trigger significant acceleration of the ice stream. Upstream acceleration is sustained through a combination of various feedback mechanisms. However, lateral stress and ice influx into the trough are able to stabilise the ice stream. This study contributes to the present discussion on causes and effects of the continued changes occurring at Jakobshavn Isbræ, and emphasises that the incorporation of seasonal calving and dynamic lateral effects is key for realistic model projections of future global sea level rise on centennial time scales.

  20. Thermal ablation for hepatocellular carcinoma.

    PubMed

    Head, Hayden W; Dodd, Gerald D

    2004-11-01

    Thermal ablation, as a form of minimally invasive therapy for hepatocellular carcinoma (HCC), has become an important treatment modality. Because of the limitations of surgery, the techniques of thermal ablation have become standard therapies for HCC in some situations. This article reviews 4 thermal ablation techniques-radiofrequency (RF) ablation, microwave ablation, laser ablation, and cryoablation. Each of these techniques may have a role in treating HCC, and the mechanisms, equipment, patient selection, results, and complications of each are considered. Furthermore, combined therapies consisting of thermal ablation and adjuvant chemotherapy also show promise for enhancing these techniques. Important areas of research into thermal ablation remain, including improving the ability of ablation to treat larger tumors, determining the indications for each thermal ablation modality, optimizing image guidance, and obtaining good outcome data on the efficacy of these techniques.

  1. Nonsmooth dynamics in spiking neuron models

    NASA Astrophysics Data System (ADS)

    Coombes, S.; Thul, R.; Wedgwood, K. C. A.

    2012-11-01

    Large scale studies of spiking neural networks are a key part of modern approaches to understanding the dynamics of biological neural tissue. One approach in computational neuroscience has been to consider the detailed electrophysiological properties of neurons and build vast computational compartmental models. An alternative has been to develop minimal models of spiking neurons with a reduction in the dimensionality of both parameter and variable space that facilitates more effective simulation studies. In this latter case the single neuron model of choice is often a variant of the classic integrate-and-fire model, which is described by a nonsmooth dynamical system. In this paper we review some of the more popular spiking models of this class and describe the types of spiking pattern that they can generate (ranging from tonic to burst firing). We show that a number of techniques originally developed for the study of impact oscillators are directly relevant to their analysis, particularly those for treating grazing bifurcations. Importantly we highlight one particular single neuron model, capable of generating realistic spike trains, that is both computationally cheap and analytically tractable. This is a planar nonlinear integrate-and-fire model with a piecewise linear vector field and a state dependent reset upon spiking. We call this the PWL-IF model and analyse it at both the single neuron and network level. The techniques and terminology of nonsmooth dynamical systems are used to flesh out the bifurcation structure of the single neuron model, as well as to develop the notion of Lyapunov exponents. We also show how to construct the phase response curve for this system, emphasising that techniques in mathematical neuroscience may also translate back to the field of nonsmooth dynamical systems. The stability of periodic spiking orbits is assessed using a linear stability analysis of spiking times. At the network level we consider linear coupling between voltage

  2. Dynamic occupancy models for explicit colonization processes

    USGS Publications Warehouse

    Broms, Kristin M.; Hooten, Mevin B.; Johnson, Devin S.; Altwegg, Res; Conquest, Loveday

    2016-01-01

    The dynamic, multi-season occupancy model framework has become a popular tool for modeling open populations with occupancies that change over time through local colonizations and extinctions. However, few versions of the model relate these probabilities to the occupancies of neighboring sites or patches. We present a modeling framework that incorporates this information and is capable of describing a wide variety of spatiotemporal colonization and extinction processes. A key feature of the model is that it is based on a simple set of small-scale rules describing how the process evolves. The result is a dynamic process that can account for complicated large-scale features. In our model, a site is more likely to be colonized if more of its neighbors were previously occupied and if it provides more appealing environmental characteristics than its neighboring sites. Additionally, a site without occupied neighbors may also become colonized through the inclusion of a long-distance dispersal process. Although similar model specifications have been developed for epidemiological applications, ours formally accounts for detectability using the well-known occupancy modeling framework. After demonstrating the viability and potential of this new form of dynamic occupancy model in a simulation study, we use it to obtain inference for the ongoing Common Myna (Acridotheres tristis) invasion in South Africa. Our results suggest that the Common Myna continues to enlarge its distribution and its spread via short distance movement, rather than long-distance dispersal. Overall, this new modeling framework provides a powerful tool for managers examining the drivers of colonization including short- vs. long-distance dispersal, habitat quality, and distance from source populations.

  3. Direct modeling for computational fluid dynamics

    NASA Astrophysics Data System (ADS)

    Xu, Kun

    2015-06-01

    All fluid dynamic equations are valid under their modeling scales, such as the particle mean free path and mean collision time scale of the Boltzmann equation and the hydrodynamic scale of the Navier-Stokes (NS) equations. The current computational fluid dynamics (CFD) focuses on the numerical solution of partial differential equations (PDEs), and its aim is to get the accurate solution of these governing equations. Under such a CFD practice, it is hard to develop a unified scheme that covers flow physics from kinetic to hydrodynamic scales continuously because there is no such governing equation which could make a smooth transition from the Boltzmann to the NS modeling. The study of fluid dynamics needs to go beyond the traditional numerical partial differential equations. The emerging engineering applications, such as air-vehicle design for near-space flight and flow and heat transfer in micro-devices, do require further expansion of the concept of gas dynamics to a larger domain of physical reality, rather than the traditional distinguishable governing equations. At the current stage, the non-equilibrium flow physics has not yet been well explored or clearly understood due to the lack of appropriate tools. Unfortunately, under the current numerical PDE approach, it is hard to develop such a meaningful tool due to the absence of valid PDEs. In order to construct multiscale and multiphysics simulation methods similar to the modeling process of constructing the Boltzmann or the NS governing equations, the development of a numerical algorithm should be based on the first principle of physical modeling. In this paper, instead of following the traditional numerical PDE path, we introduce direct modeling as a principle for CFD algorithm development. Since all computations are conducted in a discretized space with limited cell resolution, the flow physics to be modeled has to be done in the mesh size and time step scales. Here, the CFD is more or less a direct

  4. Dynamic force matching: Construction of dynamic coarse-grained models with realistic short time dynamics and accurate long time dynamics

    NASA Astrophysics Data System (ADS)

    Davtyan, Aram; Voth, Gregory A.; Andersen, Hans C.

    2016-12-01

    We recently developed a dynamic force matching technique for converting a coarse-grained (CG) model of a molecular system, with a CG potential energy function, into a dynamic CG model with realistic dynamics [A. Davtyan et al., J. Chem. Phys. 142, 154104 (2015)]. This is done by supplementing the model with additional degrees of freedom, called "fictitious particles." In that paper, we tested the method on CG models in which each molecule is coarse-grained into one CG point particle, with very satisfactory results. When the method was applied to a CG model of methanol that has two CG point particles per molecule, the results were encouraging but clearly required improvement. In this paper, we introduce a new type (called type-3) of fictitious particle that exerts forces on the center of mass of two CG sites. A CG model constructed using type-3 fictitious particles (as well as type-2 particles previously used) gives a much more satisfactory dynamic model for liquid methanol. In particular, we were able to construct a CG model that has the same self-diffusion coefficient and the same rotational relaxation time as an all-atom model of liquid methanol. Type-3 particles and generalizations of it are likely to be useful in converting more complicated CG models into dynamic CG models.

  5. Dynamics of macroautophagy: Modeling and oscillatory behavior

    NASA Astrophysics Data System (ADS)

    Han, Kyungreem; Kwon, Hyun Woong; Kang, Hyuk; Kim, Jinwoong; Lee, Myung-Shik; Choi, M. Y.

    2012-02-01

    We propose a model for macroautophagy and study the resulting dynamics of autophagy in a system isolated from its extra-cellular environment. It is found that the intracellular concentrations of autophagosomes and autolysosomes display oscillations with their own natural frequencies. Such oscillatory behaviors, which are interrelated to the dynamics of intracellular ATP, amino acids, and proteins, are consistent with the very recent biological observations. Implications of this theoretical study of autophagy are discussed, with regard to the possibility of guiding molecular studies of autophagy.

  6. Effect of Current Rise-time on the Formation of Precursor Structures and Mass Ablation Rate in Cylindrical Wire Array Z-Pinches

    SciTech Connect

    Bott, S. C.; Eshaq, Y.; Ueda, U.; Haas, D. M.; Beg, F. N.; Hammer, D. A.; Kusse, B.; Greenly, J.; Shelkovenko, T. A.; Pikuz, S. A.; Blesener, I. C.; McBride, R. D.; Douglass, J. D.; Bell, K.; Knapp, P.; Chittenden, J. P.; Lebedev, S. V.; Bland, S. N.; Hall, G. N.; Suzuki, F. A.

    2009-01-21

    We present the first study to directly compare the mass ablation rates of cylindrical wire arrays as a function of the current rise-rate. Formation of the precursor column is investigated on both the MAPGIE (1 MA, 250 ns) and COBRA (1 MA, 100 ns) generators, and results are used to infer the change in the mass ablation rate induced by the rise-rate of the drive current. Laser shadowography, gated XUV imaging and x-ray diodes are used to compare the dynamical behavior both generators, and x-pinch radiography and XUV spectroscopy and provide density evolution and temperature measurements respectively. Results are compared to predictions from an analytical scaling model based on a fixed ablation rate, and the close correlation achieved suggests that the effective ablation velocity is not a strong function of the current rise rate.

  7. Methodology for Uncertainty Analysis of Dynamic Computational Toxicology Models

    EPA Science Inventory

    The task of quantifying the uncertainty in both parameter estimates and model predictions has become more important with the increased use of dynamic computational toxicology models by the EPA. Dynamic toxicological models include physiologically-based pharmacokinetic (PBPK) mode...

  8. Next Generation Carbon-Nitrogen Dynamics Model

    NASA Astrophysics Data System (ADS)

    Xu, C.; Fisher, R. A.; Vrugt, J. A.; Wullschleger, S. D.; McDowell, N. G.

    2012-12-01

    Nitrogen is a key regulator of vegetation dynamics, soil carbon release, and terrestrial carbon cycles. Thus, to assess energy impacts on the global carbon cycle and future climates, it is critical that we have a mechanism-based and data-calibrated nitrogen model that simulates nitrogen limitation upon both above and belowground carbon dynamics. In this study, we developed a next generation nitrogen-carbon dynamic model within the NCAR Community Earth System Model (CESM). This next generation nitrogen-carbon dynamic model utilized 1) a mechanistic model of nitrogen limitation on photosynthesis with nitrogen trade-offs among light absorption, electron transport, carboxylation, respiration and storage; 2) an optimal leaf nitrogen model that links soil nitrogen availability and leaf nitrogen content; and 3) an ecosystem demography (ED) model that simulates the growth and light competition of tree cohorts and is currently coupled to CLM. Our three test cases with changes in CO2 concentration, growing temperature and radiation demonstrate the model's ability to predict the impact of altered environmental conditions on nitrogen allocations. Currently, we are testing the model against different datasets including soil fertilization and Free Air CO2 enrichment (FACE) experiments across different forest types. We expect that our calibrated model will considerably improve our understanding and predictability of vegetation-climate interactions.itrogen allocation model evaluations. The figure shows the scatter plots of predicted and measured Vc,max and Jmax scaled to 25 oC (i.e.,Vc,max25 and Jmax25) at elevated CO2 (570 ppm, test case one), reduced radiation in canopy (0.1-0.9 of the radiation at the top of canopy, test case two) and reduced growing temperature (15oC, test case three). The model is first calibrated using control data under ambient CO2 (370 ppm), radiation at the top of the canopy (621 μmol photon/m2/s), the normal growing temperature (30oC). The fitted model

  9. Dynamical modelling of galactic disc outskirts

    NASA Astrophysics Data System (ADS)

    Athanassoula, E.

    2017-03-01

    I review briefly some dynamical models of structures in the outer parts of disc galaxies, including models of polar rings, tidal tails and bridges. I then discuss the density distribution in the outer parts of discs. For this, I compare observations to results of a model in which the disc galaxy is in fact the remnant of a major merger, and find good agreement. This comparison includes radial profiles of the projected surface density and of stellar age, as well as time evolution of the break radius and of the inner and outer disc scale lengths. I also compare the radial projected surface density profiles of dynamically motivated mono-age populations and find that, compared to older populations, younger ones have flatter density profiles in the inner region and steeper in the outer one. The break radius, however, does not vary with stellar age, again in good agreement with observations.

  10. Continuum modeling of cooperative traffic flow dynamics

    NASA Astrophysics Data System (ADS)

    Ngoduy, D.; Hoogendoorn, S. P.; Liu, R.

    2009-07-01

    This paper presents a continuum approach to model the dynamics of cooperative traffic flow. The cooperation is defined in our model in a way that the equipped vehicle can issue and receive a warning massage when there is downstream congestion. Upon receiving the warning massage, the (up-stream) equipped vehicle will adapt the current desired speed to the speed at the congested area in order to avoid sharp deceleration when approaching the congestion. To model the dynamics of such cooperative systems, a multi-class gas-kinetic theory is extended to capture the adaptation of the desired speed of the equipped vehicle to the speed at the downstream congested traffic. Numerical simulations are carried out to show the influence of the penetration rate of the equipped vehicles on traffic flow stability and capacity in a freeway.

  11. Subject-specific four-dimensional liver motion modeling based on registration of dynamic MRI

    PubMed Central

    Noorda, Yolanda H.; Bartels, Lambertus W.; Viergever, Max A.; Pluim, Josien P.W.

    2016-01-01

    Abstract. Magnetic resonance-guided high intensity focused ultrasound treatment of the liver is a promising noninvasive technique for ablation of liver lesions. For the technique to be used in clinical practice, however, the issue of liver motion needs to be addressed. A subject-specific four-dimensional liver motion model is presented that is created based on registration of dynamically acquired magnetic resonance data. This model can be used for predicting the tumor motion trajectory for treatment planning and to indicate the tumor position for treatment guidance. The performance of the model was evaluated on a dynamic scan series that was not used to build the model. The method achieved an average Dice coefficient of 0.93 between the predicted and actual liver profiles and an average vessel misalignment of 3.0 mm. The model performed robustly, with a small variation in the results per subject. The results demonstrate the potential of the model to be used for MRI-guided treatment of liver lesions. Furthermore, the model can possibly be applied in other image-guided therapies, for instance radiotherapy of the liver. PMID:27493981

  12. 5D model for accurate representation and visualization of dynamic cardiac structures

    NASA Astrophysics Data System (ADS)

    Lin, Wei-te; Robb, Richard A.

    2000-05-01

    Accurate cardiac modeling is challenging due to the intricate structure and complex contraction patterns of myocardial tissues. Fast imaging techniques can provide 4D structural information acquired as a sequence of 3D images throughout the cardiac cycle. To mode. The beating heart, we created a physics-based surface model that deforms between successive time point in the cardiac cycle. 3D images of canine hearts were acquired during one complete cardiac cycle using the DSR and the EBCT. The left ventricle of the first time point is reconstructed as a triangular mesh. A mass-spring physics-based deformable mode,, which can expand and shrink with local contraction and stretching forces distributed in an anatomically accurate simulation of cardiac motion, is applied to the initial mesh and allows the initial mesh to deform to fit the left ventricle in successive time increments of the sequence. The resulting 4D model can be interactively transformed and displayed with associated regional electrical activity mapped onto anatomic surfaces, producing a 5D model, which faithfully exhibits regional cardiac contraction and relaxation patterns over the entire heart. The model faithfully represents structural changes throughout the cardiac cycle. Such models provide the framework for minimizing the number of time points required to usefully depict regional motion of myocardium and allow quantitative assessment of regional myocardial motion. The electrical activation mapping provides spatial and temporal correlation within the cardiac cycle. In procedures which as intra-cardiac catheter ablation, visualization of the dynamic model can be used to accurately localize the foci of myocardial arrhythmias and guide positioning of catheters for optimal ablation.

  13. Learning generative models of molecular dynamics

    PubMed Central

    2012-01-01

    We introduce three algorithms for learning generative models of molecular structures from molecular dynamics simulations. The first algorithm learns a Bayesian-optimal undirected probabilistic model over user-specified covariates (e.g., fluctuations, distances, angles, etc). L1 reg-ularization is used to ensure sparse models and thus reduce the risk of over-fitting the data. The topology of the resulting model reveals important couplings between different parts of the protein, thus aiding in the analysis of molecular motions. The generative nature of the model makes it well-suited to making predictions about the global effects of local structural changes (e.g., the binding of an allosteric regulator). Additionally, the model can be used to sample new conformations. The second algorithm learns a time-varying graphical model where the topology and parameters change smoothly along the trajectory, revealing the conformational sub-states. The last algorithm learns a Markov Chain over undirected graphical models which can be used to study and simulate kinetics. We demonstrate our algorithms on multiple molecular dynamics trajectories. PMID:22369071

  14. Global dynamic modeling of a transmission system

    NASA Technical Reports Server (NTRS)

    Choy, F. K.; Qian, W.

    1993-01-01

    The work performed on global dynamic simulation and noise correlation of gear transmission systems at the University of Akron is outlined. The objective is to develop a comprehensive procedure to simulate the dynamics of the gear transmission system coupled with the effects of gear box vibrations. The developed numerical model is benchmarked with results from experimental tests at NASA Lewis Research Center. The modal synthesis approach is used to develop the global transient vibration analysis procedure used in the model. Modal dynamic characteristics of the rotor-gear-bearing system are calculated by the matrix transfer method while those of the gear box are evaluated by the finite element method (NASTRAN). A three-dimensional, axial-lateral coupled bearing model is used to couple the rotor vibrations with the gear box motion. The vibrations between the individual rotor systems are coupled through the nonlinear gear mesh interactions. The global equations of motion are solved in modal coordinates and the transient vibration of the system is evaluated by a variable time-stepping integration scheme. The relationship between housing vibration and resulting noise of the gear transmission system is generated by linear transfer functions using experimental data. A nonlinear relationship of the noise components to the fundamental mesh frequency is developed using the hypercoherence function. The numerically simulated vibrations and predicted noise of the gear transmission system are compared with the experimental results from the gear noise test rig at NASA Lewis Research Center. Results of the comparison indicate that the global dynamic model developed can accurately simulate the dynamics of a gear transmission system.

  15. Global Langevin model of multidimensional biomolecular dynamics

    NASA Astrophysics Data System (ADS)

    Schaudinnus, Norbert; Lickert, Benjamin; Biswas, Mithun; Stock, Gerhard

    2016-11-01

    Molecular dynamics simulations of biomolecular processes are often discussed in terms of diffusive motion on a low-dimensional free energy landscape F ( 𝒙 ) . To provide a theoretical basis for this interpretation, one may invoke the system-bath ansatz á la Zwanzig. That is, by assuming a time scale separation between the slow motion along the system coordinate x and the fast fluctuations of the bath, a memory-free Langevin equation can be derived that describes the system's motion on the free energy landscape F ( 𝒙 ) , which is damped by a friction field and driven by a stochastic force that is related to the friction via the fluctuation-dissipation theorem. While the theoretical formulation of Zwanzig typically assumes a highly idealized form of the bath Hamiltonian and the system-bath coupling, one would like to extend the approach to realistic data-based biomolecular systems. Here a practical method is proposed to construct an analytically defined global model of structural dynamics. Given a molecular dynamics simulation and adequate collective coordinates, the approach employs an "empirical valence bond"-type model which is suitable to represent multidimensional free energy landscapes as well as an approximate description of the friction field. Adopting alanine dipeptide and a three-dimensional model of heptaalanine as simple examples, the resulting Langevin model is shown to reproduce the results of the underlying all-atom simulations. Because the Langevin equation can also be shown to satisfy the underlying assumptions of the theory (such as a delta-correlated Gaussian-distributed noise), the global model provides a correct, albeit empirical, realization of Zwanzig's formulation. As an application, the model can be used to investigate the dependence of the system on parameter changes and to predict the effect of site-selective mutations on the dynamics.

  16. Dynamic Modeling of Meandering Alluvial Channels

    NASA Astrophysics Data System (ADS)

    Lan, Yongqiang

    1990-01-01

    The migration of meandering alluvial channels is investigated theoretically, numerically, and experimentally. An equation for the rate of bank erosion is derived from a two-dimensional continuity equation for sediment transport linked with the depth-averaged dynamic flow equations. A simple one-dimensional theoretical analysis of meander migration leads to a relationship between the migration rate and the relative channel curvature and sediment properties. The simple model appropriately simulates the pattern and rate of meander expansion and migrations of the White River, Indiana and the East Nishnabotna River, Iowa. Application of the one-dimensional model to sine -generated alluvial channels indicates that meander migration reaches its maximum when the relative radius of curvature reaches about 4.8, or when the sinuosity of meander approaches 1.3. A two-dimensional numerical model, DYNAMIC, which predicts both lateral and longitudinal migration of alluvial channels is then developed, based on a system of quasi -steady depth-averaged flow dynamic equations, a sediment continuity equation, and a bank erosion equation. A linear analysis of the two-dimensional model leads to a convolutional relation between the rate of meander migration and flow and sediment properties. In the two-dimensional numerical analysis, a numerical algorithm called FLOWSOL is developed to solve the flow dynamic equations. The flow algorithm is then linked to the sediment continuity equation and bank erosion equation to simulate bed deformation and bank erosion. The developed two-dimensional model is applied to calculate the velocity profiles in Rozovskii's experiments and the bed deformation and shear stress in Hooke's experiments. Good agreement is obtained between the calculated and measured velocities, shear stresses and bed profiles in all experiments. Small scaled meandering rivers are developed successfully on a floodplain with or without cohesive materials (about 3%) in a wide

  17. Overview of the GRC Stirling Convertor System Dynamic Model

    NASA Technical Reports Server (NTRS)

    Lewandowski, Edward J.; Regan, Timothy F.

    2004-01-01

    A Stirling Convertor System Dynamic Model has been developed at the Glenn Research Center for controls, dynamics, and systems development of free-piston convertor power systems. It models the Stirling cycle thermodynamics, heat flow, gas, mechanical, and mounting dynamics, the linear alternator, and the controller. The model's scope extends from the thermal energy input to thermal, mechanical dynamics, and electrical energy out, allowing one to study complex system interactions among subsystems. The model is a non-linear time-domain model containing sub-cycle dynamics, allowing it to simulate transient and dynamic phenomena that other models cannot. The model details and capability are discussed.

  18. Ablative skin resurfacing.

    PubMed

    Agrawal, Nidhi; Smith, Greg; Heffelfinger, Ryan

    2014-02-01

    Ablative laser resurfacing has evolved as a safe and effective treatment for skin rejuvenation. Although traditional lasers were associated with significant thermal damage and lengthy recovery, advances in laser technology have improved safety profiles and reduced social downtime. CO2 lasers remain the gold standard of treatment, and fractional ablative devices capable of achieving remarkable clinical improvement with fewer side effects and shorter recovery times have made it a more practical option for patients. Although ablative resurfacing has become safer, careful patient selection and choice of suitable laser parameters are essential to minimize complications and optimize outcomes. This article describes the current modalities used in ablative laser skin resurfacing and examines their efficacy, indications, and possible side effects.

  19. Moldable cork ablation material

    NASA Technical Reports Server (NTRS)

    1977-01-01

    A successful thermal ablative material was manufactured. Moldable cork sheets were tested for density, tensile strength, tensile elongation, thermal conductivity, compression set, and specific heat. A moldable cork sheet, therefore, was established as a realistic product.

  20. Polarizable water model for Dissipative Particle Dynamics

    NASA Astrophysics Data System (ADS)

    Pivkin, Igor; Peter, Emanuel

    2015-11-01

    Dissipative Particle Dynamics (DPD) is an efficient particle-based method for modeling mesoscopic behavior of fluid systems. DPD forces conserve the momentum resulting in a correct description of hydrodynamic interactions. Polarizability has been introduced into some coarse-grained particle-based simulation methods; however it has not been done with DPD before. We developed a new polarizable coarse-grained water model for DPD, which employs long-range electrostatics and Drude oscillators. In this talk, we will present the model and its applications in simulations of membrane systems, where polarization effects play an essential role.

  1. Informations in Models of Evolutionary Dynamics

    NASA Astrophysics Data System (ADS)

    Rivoire, Olivier

    2016-03-01

    Biological organisms adapt to changes by processing informations from different sources, most notably from their ancestors and from their environment. We review an approach to quantify these informations by analyzing mathematical models of evolutionary dynamics and show how explicit results are obtained for a solvable subclass of these models. In several limits, the results coincide with those obtained in studies of information processing for communication, gambling or thermodynamics. In the most general case, however, information processing by biological populations shows unique features that motivate the analysis of specific models.

  2. Revisiting the interplay between ablation, collisional, and radiative processes during ns-laser ablation

    NASA Astrophysics Data System (ADS)

    Autrique, D.; Gornushkin, I.; Alexiades, V.; Chen, Z.; Bogaerts, A.; Rethfeld, B.

    2013-10-01

    A study of ns-laser ablation is presented, which focuses on the transient behavior of the physical processes that act in and above a copper sample. A dimensionless multiphase collisional radiative model describes the interplay between the ablation, collisional, and radiative mechanisms. Calculations are done for a 6 ns-Nd:YAG laser pulse operating at 532 nm and fluences up to 15 J/cm2. Temporal intensity profiles as well as transmissivities are in good agreement with experimental results. It is found that volumetric ablation mechanisms and photo-processes both play an essential role in the onset of ns-laser induced breakdown.

  3. A computational model for dynamic vision

    NASA Technical Reports Server (NTRS)

    Moezzi, Saied; Weymouth, Terry E.

    1990-01-01

    This paper describes a novel computational model for dynamic vision which promises to be both powerful and robust. Furthermore the paradigm is ideal for an active vision system where camera vergence changes dynamically. Its basis is the retinotopically indexed object-centered encoding of the early visual information. Specifically, the relative distances of objects to a set of referents is encoded in image registered maps. To illustrate the efficacy of the method, it is applied to the problem of dynamic stereo vision. Integration of depth information over multiple frames obtained by a moving robot generally requires precise information about the relative camera position from frame to frame. Usually, this information can only be approximated. The method facilitates the integration of depth information without direct use or knowledge of camera motion.

  4. Structural system identification: Structural dynamics model validation

    SciTech Connect

    Red-Horse, J.R.

    1997-04-01

    Structural system identification is concerned with the development of systematic procedures and tools for developing predictive analytical models based on a physical structure`s dynamic response characteristics. It is a multidisciplinary process that involves the ability (1) to define high fidelity physics-based analysis models, (2) to acquire accurate test-derived information for physical specimens using diagnostic experiments, (3) to validate the numerical simulation model by reconciling differences that inevitably exist between the analysis model and the experimental data, and (4) to quantify uncertainties in the final system models and subsequent numerical simulations. The goal of this project was to develop structural system identification techniques and software suitable for both research and production applications in code and model validation.

  5. Endometrial Ablation for Menorrhagia

    PubMed Central

    Sanders, Barry H.

    1992-01-01

    Endometrial ablation is a relatively new treatment for patients with persistent menorrhagia. The procedure can be performed by either laser photocoagulation or electrocoagulation; both have a very low risk of complication. Generally, less than 24 hours of hospitalization is required and return to normal activities, including work, is almost immediate. Endometrial ablation is likely to become a mainstay of treatment for menorrhagia as the technology and training become more readily available. PMID:21229128

  6. Condensation of ablation plumes in the irradiation of metals by high-intensity nanosecond laser pulses at atmospheric pressure

    SciTech Connect

    Kozadaev, K V

    2016-01-31

    The Anisimov–Luk'yanchuk model is adapted for describing the condensation of vapour-plasma plumes produced in the irradiation of metal targets by high-intensity (10{sup 8} – 10{sup 10} W cm{sup -2}) nanosecond (10 – 100 ns) pulses at atmospheric pressure. The resultant data suggest that the initial stages of the development of metal ablation plumes correspond with a high degree of accuracy to the Zel'dovich–Raizer theory of dynamic condensation; however, at the stage of the ablation plume decay, the liquid-droplet phase is formed primarily by coalescence of 'nuclei'. (interaction of laser radiation with matter. laser plasma)

  7. Validation of supraglacial bathymetry models developed for optical sensors using high-resolution stereo-imagery: Implications for meltwater storage assessments across the ablation region of the Greenland ice sheet.

    NASA Astrophysics Data System (ADS)

    Moussavi, M. S.; Abdalati, W.; Pope, A.; Scambos, T. A.

    2014-12-01

    Supraglacial lakes on the Greenland ice sheet have attracted a great deal of attention in the scientific community with respect to their role in seasonal enhancements of ice flow velocities. Large amounts of meltwater generated at the surface can be efficiently delivered to the base of the ice sheet through hydro-fractured pathways beneath supraglacial lakes, potentially increasing basal sliding velocities. Therefore, assessments of surface meltwater volumes stored in and transported from supraglacial lakes to the englacial and subglacial systems are crucial for better coupling models of ice sheet hydrology and dynamics, particularly in response to a warming climate. Several physically-based and empirical passive remote sensing techniques based on MODIS, ASTER, Landsat measurements have been proposed to derive bathymetric information over supraglacial lakes. While unvalidated, most of the techniques have been calibrated against limited in-situ observations and yet have been applied across large regions of the ablation region. In this study, we investigate the validity of such techniques, specifically developed for MODIS, Landsat and WorldView-2 instruments. To make such an assessment, we calibrate the depth-retrieval models by using water-leaving radiances over lakes captured by a specific sensor early in the melt season, and depth measurements from a high resolution WV-2 DEM over the same lakes when devoid of water. Having applied calibrated models over lakes (validation dataset), we then compare the modeled depths against observations derived from the after-drainage DEM of the area. Our primary study site is located in a portion of the ablation region of the GrIS with its center situated at 67o 18' N, 48o 55' W at approximately 1200 m A.S.L[1]. Initial results from the study specifically point to the capability of WV-2 multispectral measurements in calculating lake depths with a high degree of accuracy (bias< 2% of mean depth) and precision (RMSE< 12% of mean

  8. Reduced Dynamic Models in Epithelial Transport

    PubMed Central

    Hernández, Julio A.

    2013-01-01

    Most models developed to represent transport across epithelia assume that the cell interior constitutes a homogeneous compartment, characterized by a single concentration value of the transported species. This conception differs significantly from the current view, in which the cellular compartment is regarded as a highly crowded media of marked structural heterogeneity. Can the finding of relatively simple dynamic properties of transport processes in epithelia be compatible with this complex structural conception of the cell interior? The purpose of this work is to contribute with one simple theoretical approach to answer this question. For this, the techniques of model reduction are utilized to obtain a two-state reduced model from more complex linear models of transcellular transport with a larger number of intermediate states. In these complex models, each state corresponds to the solute concentration in an intermediate intracellular compartment. In addition, the numerical studies reveal that it is possible to approximate a general two-state model under conditions where strict reduction of the complex models cannot be performed. These results contribute with arguments to reconcile the current conception of the cell interior as a highly complex medium with the finding of relatively simple dynamic properties of transport across epithelial cells. PMID:23533397

  9. Bioinactivation: Software for modelling dynamic microbial inactivation.

    PubMed

    Garre, Alberto; Fernández, Pablo S; Lindqvist, Roland; Egea, Jose A

    2017-03-01

    This contribution presents the bioinactivation software, which implements functions for the modelling of isothermal and non-isothermal microbial inactivation. This software offers features such as user-friendliness, modelling of dynamic conditions, possibility to choose the fitting algorithm and generation of prediction intervals. The software is offered in two different formats: Bioinactivation core and Bioinactivation SE. Bioinactivation core is a package for the R programming language, which includes features for the generation of predictions and for the fitting of models to inactivation experiments using non-linear regression or a Markov Chain Monte Carlo algorithm (MCMC). The calculations are based on inactivation models common in academia and industry (Bigelow, Peleg, Mafart and Geeraerd). Bioinactivation SE supplies a user-friendly interface to selected functions of Bioinactivation core, namely the model fitting of non-isothermal experiments and the generation of prediction intervals. The capabilities of bioinactivation are presented in this paper through a case study, modelling the non-isothermal inactivation of Bacillus sporothermodurans. This study has provided a full characterization of the response of the bacteria to dynamic temperature conditions, including confidence intervals for the model parameters and a prediction interval of the survivor curve. We conclude that the MCMC algorithm produces a better characterization of the biological uncertainty and variability than non-linear regression. The bioinactivation software can be relevant to the food and pharmaceutical industry, as well as to regulatory agencies, as part of a (quantitative) microbial risk assessment.

  10. Dynamic Alignment Models for Neural Coding

    PubMed Central

    Kollmorgen, Sepp; Hahnloser, Richard H. R.

    2014-01-01

    Recently, there have been remarkable advances in modeling the relationships between the sensory environment, neuronal responses, and behavior. However, most models cannot encompass variable stimulus-response relationships such as varying response latencies and state or context dependence of the neural code. Here, we consider response modeling as a dynamic alignment problem and model stimulus and response jointly by a mixed pair hidden Markov model (MPH). In MPHs, multiple stimulus-response relationships (e.g., receptive fields) are represented by different states or groups of states in a Markov chain. Each stimulus-response relationship features temporal flexibility, allowing modeling of variable response latencies, including noisy ones. We derive algorithms for learning of MPH parameters and for inference of spike response probabilities. We show that some linear-nonlinear Poisson cascade (LNP) models are a special case of MPHs. We demonstrate the efficiency and usefulness of MPHs in simulations of both jittered and switching spike responses to white noise and natural stimuli. Furthermore, we apply MPHs to extracellular single and multi-unit data recorded in cortical brain areas of singing birds to showcase a novel method for estimating response lag distributions. MPHs allow simultaneous estimation of receptive fields, latency statistics, and hidden state dynamics and so can help to uncover complex stimulus response relationships that are subject to variable timing and involve diverse neural codes. PMID:24625448

  11. Modelling Holocene peatland and permafrost dynamics with the LPJ-GUESS dynamic vegetation model

    NASA Astrophysics Data System (ADS)

    Chaudhary, Nitin; Miller, Paul A.; Smith, Benjamin

    2016-04-01

    Dynamic global vegetation models (DGVMs) are an important platform to study past, present and future vegetation patterns together with associated biogeochemical cycles and climate feedbacks (e.g. Sitch et al. 2008, Smith et al. 2001). However, very few attempts have been made to simulate peatlands using DGVMs (Kleinen et al. 2012, Tang et al. 2015, Wania et al. 2009a). In the present study, we have improved the peatland dynamics in the state-of-the-art dynamic vegetation model (LPJ-GUESS) in order to understand the long-term evolution of northern peatland ecosystems and to assess the effect of changing climate on peatland carbon balance. We combined a dynamic multi-layer approach (Frolking et al. 2010, Hilbert et al. 2000) with soil freezing-thawing functionality (Ekici et al. 2015, Wania et al. 2009a) in LPJ-GUESS. The new model is named LPJ-GUESS Peatland (LPJ-GUESS-P) (Chaudhary et al. in prep). The model was calibrated and tested at the sub-arctic mire in Stordalen, Sweden, and the model was able to capture the reported long-term vegetation dynamics and peat accumulation patterns in the mire (Kokfelt et al. 2010). For evaluation, the model was run at 13 grid points across a north to south transect in Europe. The modelled peat accumulation values were found to be consistent with the published data for each grid point (Loisel et al. 2014). Finally, a series of additional experiments were carried out to investigate the vulnerability of high-latitude peatlands to climate change. We find that the Stordalen mire will sequester more carbon in the future due to milder and wetter climate conditions, longer growing seasons, and the carbon fertilization effect. References: - Chaudhary et al. (in prep.). Modelling Holocene peatland and permafrost dynamics with the LPJ-GUESS dynamic vegetation model - Ekici A, et al. 2015. Site-level model intercomparison of high latitude and high altitude soil thermal dynamics in tundra and barren landscapes. The Cryosphere 9: 1343

  12. Activated Dynamics in Dense Model Nanocomposites

    NASA Astrophysics Data System (ADS)

    Xie, Shijie; Schweizer, Kenneth

    The nonlinear Langevin equation approach is applied to investigate the ensemble-averaged activated dynamics of small molecule liquids (or disconnected segments in a polymer melt) in dense nanocomposites under model isobaric conditions where the spherical nanoparticles are dynamically fixed. Fully thermalized and quenched-replica integral equation theory methods are employed to investigate the influence on matrix dynamics of the equilibrium and nonequilibrium nanocomposite structure, respectively. In equilibrium, the miscibility window can be narrow due to depletion and bridging attraction induced phase separation which limits the study of activated dynamics to regimes where the barriers are relatively low. In contrast, by using replica integral equation theory, macroscopic demixing is suppressed, and the addition of nanoparticles can induce much slower activated matrix dynamics which can be studied over a wide range of pure liquid alpha relaxation times, interfacial attraction strengths and ranges, particle sizes and loadings, and mixture microstructures. Numerical results for the mean activated relaxation time, transient localization length, matrix elasticity and kinetic vitrification in the nanocomposite will be presented.

  13. Dynamic Modeling of an Evapotranspiration Cap

    SciTech Connect

    Jacob J. Jacobson; Steven Piet; Rafael Soto; Gerald Sehlke; Harold Heydt; John Visser

    2005-10-01

    The U.S. Department of Energy is scheduled to design and install hundreds of landfill caps/barriers over the next several decades and these caps will have a design life expectancy of up to 1,000 years. Other landfill caps with 30 year design lifetimes are reaching the end of their original design life; the changes to these caps need to be understood to provide a basis for lifetime extension. Defining the attributes that make a successful cap (one that isolates the waste from the environment) is crucial to these efforts. Because cap systems such as landfill caps are dynamic in nature, it is impossible to understand, monitor, and update lifetime predictions without understanding the dynamics of cap degradation, which is most often due to multiple interdependent factors rather than isolated independent events. In an attempt to understand the dynamics of cap degradation, a computer model using system dynamics is being developed to capture the complex behavior of an evapotranspiration cap. The specific objectives of this project are to capture the dynamic, nonlinear feedback loop structures underlying an evapotranspiration cap and, through computer simulation, gain a better understanding of long-term behavior, influencing factors, and, ultimately, long-term cap performance.

  14. Modeling of intensified high dynamic star tracker.

    PubMed

    Yan, Jinyun; Jiang, Jie; Zhang, Guangjun

    2017-01-23

    An intensified high dynamic star tracker (IHDST) is a photoelectric instrument and stably outputs three-axis attitude for a spacecraft at very high angular velocity. The IHDST uses an image intensifier to multiply the incident starlight. Thus, high sensitivity of the star detection is achieved under short exposure time such that extremely high dynamic performance is achieved. The IHDST differs from a traditional star tracker in terms of the imaging process. Therefore, we establish a quantum transfer model of IHDST based on stochastic process theory. By this model, the probability distribution of the output quantum number is obtained accurately. Then, we introduce two-dimensional Lorentz functions to describe the spatial spreading process of the IHDST. Considering the interaction of these two processes, a complete star imaging model of IHDST is provided. Using this model, the centroiding accuracy of the IHDST is analyzed in detail. Accordingly, a working parameter optimizing strategy is developed for high centroiding accuracy and improved dynamic performance. Finally, the laboratory tests and the night sky experiment support the conclusions.

  15. Thermal melting and ablation of silicon by femtosecond laser radiation

    SciTech Connect

    Ionin, A. A.; Kudryashov, S. I. Seleznev, L. V.; Sinitsyn, D. V.; Bunkin, A. F.; Lednev, V. N.; Pershin, S. M.

    2013-03-15

    The space-time dynamics of thermal melting, subsurface cavitation, spallative ablation, and fragmentation ablation of the silicon surface excited by single IR femtosecond laser pulses is studied by timeresolved optical reflection microscopy. This dynamics is revealed by monitoring picosecond and (sub)nanosecond oscillations of probe pulse reflection, which is modulated by picosecond acoustic reverberations in the dynamically growing surface melt subjected to ablation and having another acoustic impedance, and by optical interference between the probe pulse replicas reflected by the spalled layer surface and the layer retained on the target surface. The acoustic reverberation periods change during the growth and ablation of the surface melt film, which makes it possible to quantitatively estimate the contributions of these processes to the thermal dynamics of the material surface. The results on the thermal dynamics of laser excitation are supported by dynamic measurements of the ablation parameters using noncontact ultrasonic diagnostics, scanning electron microscopy, atomic force microscopy, and optical interference microscopy of the modified regions appearing on the silicon surface after ablation.

  16. Dynamical Causal Modeling from a Quantum