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Sample records for absorption spectra ir

  1. IR absorption spectra of cellulose obtained from ozonated wood

    NASA Astrophysics Data System (ADS)

    Mamleeva, N. A.; Autlov, S. A.; Kharlanov, A. N.; Bazarnova, N. G.; Lunin, V. V.

    2015-08-01

    The kinetic curves of ozone absorption by aspen wood were obtained. Processing of wood with peracetic acid gave cellulose samples. The yields of ozonated wood, water-soluble compounds, and cellulose were determined for the samples corresponding to different consumptions of ozone. The IR absorption spectra of wood and cellulose isolated from ozonated wood were analyzed. The supramolecular structure of cellulose can be changed by varying the conditions of wood ozonation.

  2. Calculation of polarized IR absorption spectra for trans-1,4-polyisoprenes of various conformations

    NASA Astrophysics Data System (ADS)

    Abdulov, Kh. Sh.

    2008-07-01

    Polarized IR spectra for two conformations of trans-1,4-polyisoprene (α-and β-gutta-percha) were calculated. The IR dichroism of the absorption bands was calculated for both conformations. The computed results for polarized IR spectra and IR dichroism agree reasonably well with the respective experiment data.

  3. IR absorption and surface-enhanced Raman spectra of the isoquinoline alkaloid berberine

    NASA Astrophysics Data System (ADS)

    Strekal', N. D.; Motevich, I. G.; Nowicky, J. W.; Maskevich, S. A.

    2007-01-01

    We present the IR absorption and surface-enhanced Raman scattering (SERS) spectra of the isoquinoline alkaloid berberine adsorbed on a silver hydrosol and on the surface of a silver electrode for different potentials. Based on quantum chemical calculations, for the first time we have assigned the vibrations in the berberine molecule according to vibrational mode. The effect of the potential of the silver electrode on the geometry of sorption of the molecule on the surface is considered, assuming a short-range mechanism for enhancement of Raman scattering.

  4. Measurement of Gas and Aerosol Phase Absorption Spectra across the Visible and Near-IR Using Supercontinuum Photoacoustic Spectroscopy.

    PubMed

    Radney, James G; Zangmeister, Christopher D

    2015-07-21

    We demonstrate a method to measure the absorption spectra of gas and aerosol species across the visible and near-IR (500 to 840 nm) using a photoacoustic (PA) spectrometer and a pulsed supercontinuum laser source. Measurements of gas phase absorption spectra were demonstrated using H2O(g) as a function of relative humidity (RH). The measured absorption intensities and peak shapes were able to be quantified and compared to spectra calculated using the 2012 High Resolution Transmission (HITRAN2012) database. Size and mass selected nigrosin aerosol was used to measure absorption spectra across the visible and near-IR. Spectra were measured as a function of aerosol size/mass and show good agreement to Mie theory calculations. Lastly, we measured the broadband absorption spectrum of flame generated soot aerosol at 5% and 70% RH. For the high RH case, we are able to quantifiably separate the soot and water absorption contributions. For soot, we observe an enhancement in the mass specific absorption cross section ranging from 1.5 at 500 nm (p < 0.01) to 1.2 at 840 nm (p < 0.2) and a concomitant increase in the absorption Ångström exponent from 1.2 ± 0.4 (5% RH) to 1.6 ± 0.3 (70% RH). PMID:26098142

  5. Size control of semimetal bismuth nanoparticles and the UV-visible and IR absorption spectra.

    PubMed

    Wang, Y W; Hong, Byung Hee; Kim, Kwang S

    2005-04-21

    We introduced a simple chemical method to synthesize semimetal bismuth nanoparticles in N,N-dimethylformamide (DMF) by reducing Bi(3+) with sodium borohydride (NaBH(4)) in the presence of poly(vinylpyrroldone) (PVP) at room temperature. The size and dispersibility of Bi nanoparticles can be easily controlled by changing the synthetic conditions such as the molar ratio of PVP to BiCl(3) and the concentration of BiCl(3). The UV-visible absorption spectra of Bi nanoparticles of different diameters are systematically studied. The surface plasmon peaks broaden with the increasing molar ratio of PVP to BiCl(3) as the size of bismuth nanoparticles decreases. Infrared (IR) spectra of the complexes with different molar ratios of PVP/BiCl(3) show a strong interaction between the carboxyl oxygen (C=O) of PVP and Bi(3+) ion and a weak interaction between the carboxyl oxygen (C=O) of PVP and the Bi atom in nanoparticles. This indicates that PVP serves as an effective capping ligand, which prevents the nanoparticles from aggregation.

  6. gamma-Irradiation effects on the thermal decomposition behaviour and IR absorption spectra of piperacillin

    NASA Astrophysics Data System (ADS)

    Mahfouz, R. M.; Gaffar, M. A.; Abu El-Fadl, A.; Hamad, Ar. G. K.

    2003-11-01

    The thermal decomposition behaviour of unirradiated and pre-gamma-irradiated piperacillin (pipril) as a semi-synthetic penicillin antibiotic has been studied in the temperature range of (273-1072 K). The decomposition was found to proceed through three major steps both for unirradiated and gamma-irradiated samples. Neither appearance nor disappearance of new bands in the IR spectrum of piperacillin was recorded as a result of gamma-irradiation but only a decrease in the intensity of most bands was observed. A degradation mechanism was suggested to explain the bond rupture and the decrease in the intensities of IR bands of gamma-irradiated piperacillin.

  7. FTIR measurements of mid-IR absorption spectra of gaseous fatty acid methyl esters at T=25-500 °C

    NASA Astrophysics Data System (ADS)

    Campbell, M. F.; Freeman, K. G.; Davidson, D. F.; Hanson, R. K.

    2014-09-01

    Gas-phase mid-infrared (IR) absorption spectra (2500-3400 cm-1) for eleven fatty acid methyl esters (FAMEs) have been quantitatively measured at temperatures between 25 and 500 °C using an FTIR spectrometer with a resolution of 1 cm-1. Using these spectra, the absorption cross section at 3.39 μm, corresponding to the monochromatic output of a helium-neon laser, is reported for each of these fuels as a function of temperature. The data indicate that the 3.39 μm cross section values of saturated FAMEs vary linearly with the logarithm of the number of Csbnd H bonds in the molecule.

  8. Intercomparison of NO2 Slant Column Densities and Vertical Profiles Inferred from Balloon-borne Measurements of Solar Absorption Spectra in the IR and UV/vis

    NASA Astrophysics Data System (ADS)

    Butz, A.; Boesch, H.; Camy-Peyret, C.; Dorf, M.; Dufour, G.; Payan, S.; Weidner, F.; Pfeilsticker, K.

    2003-04-01

    During a series of LPMA/DOAS (Laboratoire de Physique Moléculaire et Applications/Differential Optical Absorption Spectroscopy) stratospheric balloon flights direct solar spectra in the UV/vis and near IR were simultaneously measured by the onboard installed Fourier Transform (LPMA) and two channel grating spectrometer (DOAS). The measurements were conducted in spring and summer at high and midlatitudes during ascent of the balloon into the stratosphere (30 - 40 km) and solar occultation at balloon float altitude. Here we present a direct intercomparison of the NO_2 slant column densities (SCDs) and vertical profiles retrieved from UV/vis-DOAS and IR-LPMA measurements for a wide range of geophysical conditions (ambient pressure and temperature and solar illumination). The comparison study thus allows us to verify the applied retrieval procedures, i.e., the underlying spectroscopic dataset as well as the inversion algorithms. First intercomparison studies showed a sizeable discrepancy between NO_2 inferred by LPMA in the IR and DOAS in the visible spectral range indicating deficiencies in the spectral retrieval techniques. After introducing a temperature correction scheme for the DOAS retrieval and a new LPMA MULTIFIT procedure which minimizes the correlations of the fitting parameters by performing the inversion simultaneously in several micro-windows, a reasonably good agreement between NO_2 inferred from both instruments is found.

  9. Isomers of OCS{sub 2}: IR absorption spectra of OSCS and O(CS{sub 2}) in solid Ar

    SciTech Connect

    Lo, W.-J.; Chen, H.-F.; Chou, P.-H.; Lee, Y.-P.

    2004-12-22

    Irradiation of an Ar matrix sample containing O{sub 3} and CS{sub 2} with a KrF excimer laser at 248 nm yielded new lines at 1402.1 (1404.7), 1056.2 (1052.7), and 622.3 (620.5) cm-1; numbers in parentheses correspond to species in a minor matrix site. Secondary photolysis at 308 nm diminished these lines and produced mainly OCS and SO{sub 2}. Annealing of this matrix to 30 K yielded a second set of new lines at 1824.7 and 617.8 cm-1. The first set of lines are assigned to C=S stretching, O-S stretching, and S-C stretching modes of carbon disulfide S-oxide, OSCS; and the second set of lines are assigned to C=O stretching and OCS bending modes of dithiiranone, O(CS{sub 2}), respectively, based on results of {sup 34}S- and {sup 18}O-isotopic experiments and quantum-chemical calculations. These calculations using density-functional theory (B3LYP/aug-cc-pVTZ) predict four stable isomers of OCS{sub 2}: O(CS{sub 2}), SSCO, OSCS, and SOCS, listed in order of increasing energy. According to calculations, O(CS{sub 2}) has a cyclic CS{sub 2} moiety and is the most stable isomer of OCS{sub 2}. OSCS is planar, with bond angles anguprOSC congruent with 111.9 deg. and anguprSCS congruent with 177.3 deg.; it is less stable than SSCO and O(CS{sub 2}) by {approx}102 and 154 kJ mol-1, respectively, and more stable than SOCS by {approx}26 kJ mol-1. Calculated vibrational wave numbers, IR intensities, {sup 34}S- and {sup 18}O-isotopic shifts for OSCS and O(CS{sub 2}) fit satisfactorily with experimental results.

  10. Emission from water vapor and absorption from other gases at 5-7.5 μm in Spitzer-IRS Spectra Of Protoplanetary Disks

    SciTech Connect

    Sargent, B. A.; Forrest, W.; Watson, Dan M.; Kim, K. H.; Richter, I.; Tayrien, C.; D'Alessio, P.; Calvet, N.; Furlan, E.; Green, J.; Pontoppidan, K.

    2014-09-10

    We present spectra of 13 T Tauri stars in the Taurus-Auriga star-forming region showing emission in Spitzer Space Telescope Infrared Spectrograph 5-7.5 μm spectra from water vapor and absorption from other gases in these stars' protoplanetary disks. Seven stars' spectra show an emission feature at 6.6 μm due to the ν{sub 2} = 1-0 bending mode of water vapor, with the shape of the spectrum suggesting water vapor temperatures >500 K, though some of these spectra also show indications of an absorption band, likely from another molecule. This water vapor emission contrasts with the absorption from warm water vapor seen in the spectrum of the FU Orionis star V1057 Cyg. The other 6 of the 13 stars have spectra showing a strong absorption band, peaking in strength at 5.6-5.7 μm, which for some is consistent with gaseous formaldehyde (H{sub 2}CO) and for others is consistent with gaseous formic acid (HCOOH). There are indications that some of these six stars may also have weak water vapor emission. Modeling of these stars' spectra suggests these gases are present in the inner few AU of their host disks, consistent with recent studies of infrared spectra showing gas in protoplanetary disks.

  11. New atlas of IR solar spectra

    NASA Technical Reports Server (NTRS)

    Goldman, A.; Blatherwick, R. D.; Murcray, F. H.; Vanallen, J. W.; Bradford, C. M.; Cook, G. R.; Murcray, D. G.

    1980-01-01

    Over 4500 absorption lines have been marked on the spectra and the corresponding line positions tabulated. The associated absorbing telluric or solar species for more than 90% of these lines have been identified and only a fraction of the unidentified lines have peak absorptions greater than a few percent. The high resolution and the low Sun spectra greatly enhance the sensitivity limits for identification of trace constituents.

  12. Characterization and dating of blue ballpoint pen inks using principal component analysis of UV-Vis absorption spectra, IR spectroscopy, and HPTLC.

    PubMed

    Senior, Samir; Hamed, Ezzat; Masoud, Mamdouh; Shehata, Eman

    2012-07-01

    The ink of pens and ink extracted from lines on white photocopier paper of 10 blue ballpoint pens were subjected to ultraviolet-visible (UV-Vis) spectroscopy, infrared (IR), and high-performance thin-layer liquid chromatography (HPTLC). The R(f) values and color tones of the bands separated by thin-layer chromatography (TLC) analysis used to classify the writing inks into three groups. The principal component analysis (PCA) investigates the pen responsible for a piece of writing, and how time affects spectroscopy of written ink. PCA can differentiate between pen ink and ink line indicates the influence of solvent extraction process on the results. The PCA loadings are useful in individualization of a questioned ink from a database. The PCA of ink lines extracted at different times can be used to estimate the time at which a questioned document was written. The results proved that the UV-Vis spectra are effective tool to separate blue ballpoint pen ink in most cases rather than IR and HPTLC. PMID:22390819

  13. CUBISM: CUbe Builder for IRS Spectra Maps

    NASA Astrophysics Data System (ADS)

    Sings Irs Team; Smith, J. D.; Armus, Lee; Bot, Caroline; Buckalew, Brent; Dale, Danny; Helou, George; Jarrett, Tom; Roussel, Helene; Sheth, Kartik

    2011-11-01

    CUBISM, written in IDL, is a tool for constructing spectral cubes, maps, and arbitrary aperture 1D spectral extractions from sets of mapping mode spectra taken with Spitzer's IRS spectrograph. CUBISM is optimized for non-sparse maps of extended objects, e.g. the nearby galaxy sample of SINGS, but can be used with data from any spectral mapping AOR (primarily validated for maps which are designed as suggested by the mapping HOWTO).

  14. High-accuracy measurements of OH(•) reaction rate constants and IR and UV absorption spectra: ethanol and partially fluorinated ethyl alcohols.

    PubMed

    Orkin, Vladimir L; Khamaganov, Victor G; Martynova, Larissa E; Kurylo, Michael J

    2011-08-11

    Rate constants for the gas phase reactions of OH(•) radicals with ethanol and three fluorinated ethyl alcohols, CH(3)CH(2)OH (k(0)), CH(2)FCH(2)OH (k(1)), CHF(2)CH(2)OH (k(2)), and CF(3)CH(2)OH (k(3)) were measured using a flash photolysis resonance-fluorescence technique over the temperature range 220 to 370 K. The Arrhenius plots were found to exhibit noticeable curvature for all four reactions. The temperature dependences of the rate constants can be represented by the following expressions over the indicated temperature intervals: k(0)(220-370 K) = 5.98 × 10(-13)(T/298)(1.99) exp(+515/T) cm(3) molecule(-1) s(-1), k(0)(220-298 K) = (3.35 ± 0.06) × 10(-12) cm(3) molecule(-1) s(-1) [for atmospheric modeling purposes, k(0)(T) is essentially temperature-independent below room temperature, k(0)(220-298 K) = (3.35 ± 0.06) × 10(-12) cm(3) molecule(-1) s(-1)], k(1)(230-370 K) = 3.47 × 10(-14)(T/298)(4.49) exp(+977/T) cm(3) molecule(-1) s(-1), k(2)(220-370 K) = 3.87 × 10(-14)(T/298)(4.25) exp(+578/T) cm(3) molecule(-1) s(-1), and k(3)(220-370 K) = 2.48 × 10(-14)(T/298)(4.03) exp(+418/T) cm(3) molecule(-1) s(-1). The atmospheric lifetimes due to reactions with tropospheric OH(•) were estimated to be 4, 16, 62, and 171 days, respectively, under the assumption of a well-mixed atmosphere. UV absorption cross sections of all four ethanols were measured between 160 and 215 nm. The IR absorption cross sections of the three fluorinated ethanols were measured between 400 and 1900 cm(-1), and their global warming potentials were estimated.

  15. Neuron absorption study and mid-IR optical excitations

    NASA Astrophysics Data System (ADS)

    Guo, Dingkai; Chen, Xing; Vadala, Shilpa; Leach, Jennie; Kostov, Yordan; Bewley, William W.; Kim, Chul-Soo; Kim, Mijin; Canedy, Chadwick L.; Merritt, Charles D.; Vurgaftman, Igor; Meyer, Jerry R.; Choa, Fow-Sen

    2012-02-01

    Neuronal optical excitation can provide non-contacting tools to explore brain circuitry and a durable stimulation interface for cardiac pacing and visual as well as auditory sensory neuronal stimulation. To obtain accurate absorption spectra, we scan the transmission of neurons in cell culture medium, and normalize it by subtracting out the absorption spectrum of the medium alone. The resulting spectra show that the main neuronal absorption peaks are in the 3000- 6000nm band, although there is a smaller peak near 1450nm. By coupling the output of a 3μm interband cascade laser (ICL) into a mid-IR fluorozirconate fiber, we can effectively deliver more than 1J/cm2 photon intensity to the excitation site for neuronal stimulation.

  16. Poster 2:Ab initio calculations of low temperature hydrocarbon spectra for astrophysics: application to the modeling of methane absorption in the Titan atmosphere in a wide IR range

    NASA Astrophysics Data System (ADS)

    Rey, Michael; Nikitin, Andrei; Bezard, Bruno; Rannou, Pascal; Coustenis, Athena; Tyuterev, Vladimir

    2016-06-01

    Knowledge of intensities of spectral transitions in various temperature ranges including very low-T conditions is essential for the modeling of optical properties of planetary atmospheres and for other astrophysical applications. The temperature dependence of spectral features is crucial, but quantified experimental information in a wide spectral range is generally missing. A significant progress has been recently achieved in first principles quantum mechanical predictions (ab initio electronic structure + variational nuclear motion calculations) of rotationally resolved spectra for hydrocarbon molecules such as methane , ethylene and their isotopic species [1,2] . We have recently reported the TheoReTS information system (theorets.univ-reims.fr, theorets.tsu.ru) for theoretical spectra based on variational predictions from molecular potential energy and dipole moment surfaces [3] that permits online simulation of radiative properties including low-T conditions of cold planets. In this work, we apply ab initio predictions of the spectra of methane isotopologues down to T=80 K for the modeling of the transmittance in the atmosphere of Titan, Saturn's largest satellite explored by the Cassini-Huygens space mission. A very good agreement over the whole infrared range from 6,000 to 11,000 cm-1 compared with observations obtained by the Descent Imager / Spectral Radiometer (DISR) on the Huygens probe [4,5] at various altitudes will be reported.

  17. Transient absorption spectra of the laser-dressed hydrogen atom

    NASA Astrophysics Data System (ADS)

    Murakami, Mitsuko; Chu, Shih-I.

    2013-10-01

    We present a theoretical study of transient absorption spectra of laser-dressed hydrogen atoms, based on numerical solutions of the time-dependent Schrödinger equation. The timing of absorption is controlled by the delay between an extreme ultra violet (XUV) pulse and an infrared (IR) laser field. The XUV pulse is isolated and several hundred attoseconds in duration, which acts as a pump to drive the ground-state electron to excited p states. The subsequent interaction with the IR field produces dressed states, which manifest as sidebands between the 1s-np absorption spectra separated by one IR-photon energy. We demonstrate that the population of dressed states is maximized when the timing of the XUV pulse coincides with the zero crossing of the IR field, and that their energies can be manipulated in a subcycle time scale by adding a chirp to the IR field. An alternative perspective to the problem is to think of the XUV pulse as a probe to detect the dynamical ac Stark shifts. Our results indicate that the accidental degeneracy of the hydrogen excited states is removed while they are dressed by the IR field, leading to large ac Stark shifts. Furthermore, we observe the Autler-Townes doublets for the n=2 and 3 levels using the 656 nm dressing field, but their separation does not agree with the prediction by the conventional three-level model that neglects the dynamical ac Stark shifts.

  18. Electronic spectra of Fe3+ oxides and oxide hydroxides in the near IR to near UV.

    USGS Publications Warehouse

    Sherman, David M.; Waite, T.D.

    1985-01-01

    Optical absorption and diffuse reflectance spectra of several Fe2O3 and FeOOH polymorphs (hematite, maghemite, goethite, lepidocrocite) in the near-IR to near-UV spectral regions (2000-200 nm) are presented. The spectra consist primarily of Fe3+ ligand field and ligand-to-metal charge-transfer transitions.-J.A.Z.

  19. UV-IR Spectra of the Icy Saturnian Satellites

    NASA Astrophysics Data System (ADS)

    Hendrix, A. R.; Filacchione, G.; Schenk, P.; Clark, R. N.; Cuzzi, J. N.; Noll, K. S.; Spencer, J. R.

    2014-12-01

    Cassini's multi-instrument suite allows simultaneous observations of the icy satellites of Saturn over a wide range of wavelengths. We present composite UV-IR spectra (0.1-5 microns) of the leading and trailing hemispheres of the icy moons using data from Cassini supplemented with spectra from Hubble Space Telescope (STIS). We use data of Mimas, Enceladus, Tethys, Dione and Rhea from the Ultraviolet Imaging Spectrograph (UVIS), the Imaging Subsystem (ISS) and the Visual-Near Infrared Mapping Spectrometer (VIMS) taken during simultaneous measurements, or using similar observational geometries. The well-studied phase curve behaviors of the satellites are utilized to readily combine Earth-based STIS data with the Cassini datasets to create composite spectra. Focusing primarily on the UV-visible region so far, we find that the spectra of all satellites are bright and spectrally relatively flat at visible wavelengths longer than 500-600 nm; shortward of 500-600 nm the surfaces become absorbing with wavelength, resulting in reddish spectra. The satellites exhibit flattish-to-bowl-shaped spectra in the ~200-350 nm range and demonstrate the 165 nm water ice absorption edge, in varying strengths. These composite spectra are used to study the system-wide surface compositions of the satellites to understand large-scale exogenic effects (e.g., E-ring grain bombardment and radiolytic processing) at a variety of regolith sensing depths, and in particular to study implications for the presence and distribution of organics, ammonia, and other non-H2O-ice species in the system.

  20. Creating semiconductor metafilms with designer absorption spectra.

    PubMed

    Kim, Soo Jin; Fan, Pengyu; Kang, Ju-Hyung; Brongersma, Mark L

    2015-01-01

    The optical properties of semiconductors are typically considered intrinsic and fixed. Here we leverage the rapid developments in the field of optical metamaterials to create ultrathin semiconductor metafilms with designer absorption spectra. We show how such metafilms can be constructed by placing one or more types of high-index semiconductor antennas into a dense array with subwavelength spacings. It is argued that the large absorption cross-section of semiconductor antennas and their weak near-field coupling open a unique opportunity to create strongly absorbing metafilms whose spectral absorption properties directly reflect those of the individual antennas. Using experiments and simulations, we demonstrate that near-unity absorption at one or more target wavelengths of interest can be achieved in a sub-50-nm-thick metafilm using judiciously sized and spaced Ge nanobeams. The ability to create semiconductor metafilms with custom absorption spectra opens up new design strategies for planar optoelectronic devices and solar cells. PMID:26184335

  1. Creating semiconductor metafilms with designer absorption spectra

    PubMed Central

    Kim, Soo Jin; Fan, Pengyu; Kang, Ju-Hyung; Brongersma, Mark L.

    2015-01-01

    The optical properties of semiconductors are typically considered intrinsic and fixed. Here we leverage the rapid developments in the field of optical metamaterials to create ultrathin semiconductor metafilms with designer absorption spectra. We show how such metafilms can be constructed by placing one or more types of high-index semiconductor antennas into a dense array with subwavelength spacings. It is argued that the large absorption cross-section of semiconductor antennas and their weak near-field coupling open a unique opportunity to create strongly absorbing metafilms whose spectral absorption properties directly reflect those of the individual antennas. Using experiments and simulations, we demonstrate that near-unity absorption at one or more target wavelengths of interest can be achieved in a sub-50-nm-thick metafilm using judiciously sized and spaced Ge nanobeams. The ability to create semiconductor metafilms with custom absorption spectra opens up new design strategies for planar optoelectronic devices and solar cells. PMID:26184335

  2. Creating semiconductor metafilms with designer absorption spectra

    NASA Astrophysics Data System (ADS)

    Kim, Soo Jin; Fan, Pengyu; Kang, Ju-Hyung; Brongersma, Mark L.

    2015-07-01

    The optical properties of semiconductors are typically considered intrinsic and fixed. Here we leverage the rapid developments in the field of optical metamaterials to create ultrathin semiconductor metafilms with designer absorption spectra. We show how such metafilms can be constructed by placing one or more types of high-index semiconductor antennas into a dense array with subwavelength spacings. It is argued that the large absorption cross-section of semiconductor antennas and their weak near-field coupling open a unique opportunity to create strongly absorbing metafilms whose spectral absorption properties directly reflect those of the individual antennas. Using experiments and simulations, we demonstrate that near-unity absorption at one or more target wavelengths of interest can be achieved in a sub-50-nm-thick metafilm using judiciously sized and spaced Ge nanobeams. The ability to create semiconductor metafilms with custom absorption spectra opens up new design strategies for planar optoelectronic devices and solar cells.

  3. Effect of pyridine on infrared absorption spectra of copper phthalocyanine.

    PubMed

    Singh, Sukhwinder; Tripathi, S K; Saini, G S S

    2008-02-01

    Infrared absorption spectra of copper phthalocyanine in KBr pellet and pyridine solution in 400-1625 and 2900-3200 cm(-1)regions are reported. In the IR spectra of solid sample, presence of weak bands, which are forbidden according to the selection rules of D4h point group, is explained on the basis of distortion in the copper phthalocyanine molecule caused by the crystal packing effects. Observation of a new band at 1511 cm(-1) and change in intensity of some other bands in pyridine are interpreted on the basis of coordination of the solvent molecule with the central copper ion.

  4. Fourier transform Raman and IR spectra of snake skin

    NASA Astrophysics Data System (ADS)

    Barry, B. W.; Williams, A. C.; Edwards, H. G. M.

    1993-06-01

    The Fourier transform (FT) Raman and IR spectra of the shed dorsal skin of the snake Elaphe obsoleta (American black rat snake) are reported. Vibrational spectroscopic assignments are proposed for the first time. Although good quality Raman spectra were obtained from the hinge regions using an FT Raman microscope, the dorsal scale regions fluoresced even with 1064 nm IR excitation. This was ascribed to pigmentation markings on the scales.

  5. Stability properties of wines by absorption spectra

    NASA Astrophysics Data System (ADS)

    Larena, A.; Vega, J.

    1986-03-01

    The temporal evolution of absorption spectra (370-700 nm) of different spanish wines has been studied by us under the influence of air presence, and the light exposition. In particular, we have exposed the wines to a magenta light. Nevertheless, the color coordinates of wine show a little relative variation (0.1-1 %)

  6. A Simulation Program for Dynamic Infrared (IR) Spectra

    ERIC Educational Resources Information Center

    Zoerb, Matthew C.; Harris, Charles B.

    2013-01-01

    A free program for the simulation of dynamic infrared (IR) spectra is presented. The program simulates the spectrum of two exchanging IR peaks based on simple input parameters. Larger systems can be simulated with minor modifications. The program is available as an executable program for PCs or can be run in MATLAB on any operating system. Source…

  7. Theoretical IR spectra of ionized naphthalene

    NASA Technical Reports Server (NTRS)

    Pauzat, F.; Talbi, D.; Miller, M. D.; DeFrees, D. J.; Ellinger, Y.

    1992-01-01

    We report the results of a theoretical study of the effect of ionization on the IR spectrum of naphthalene, using ab initio molecular orbital theory. For that purpose we determined the structures, band frequencies, and intensities of neutral and positively ionized naphthalene. The calculated frequencies and intensities allowed an assignment of the most important bands appearing in the newly reported experimental spectrum of the positive ion. Agreement with the experimental spectrum is satisfactory enough to take into consideration the unexpected and important result that ionization significantly affects the intensities of most vibrations. A possible consequence on the interpretation of the IR interstellar emission, generally supposed to originate from polycyclic aromatic hydrocarbons (PAHs), is briefly presented.

  8. IR spectra of ICPCVD SiNx thin films for MEMS structures

    NASA Astrophysics Data System (ADS)

    Rudakov, G.; Reshetnikov, I.

    2015-11-01

    Optical properties of non-stoichiometric silicon nitride (SiNx) films for thermo sensitive membranes of microelectromechanical systems (MEMS) and microoptomechanical systems (MOMS) has been studied applying infrared (IR) spectroscopy. For the structures SiNx/Si and (thin metal layer)/SiNx/Si transmission and reflection spectra in the region of wave numbers of 500-7000 cm-1 has been investigated. For the investigated structures analysis of optical properties observed in the IR spectra both in the form of selective absorption bands and interference modulation of a baseline was conducted.

  9. IR spectra of irradiated organic materials

    NASA Astrophysics Data System (ADS)

    Strazzulla, G.; Calcagno, L.; Foti, A. M.; Massimino, P.; Spinella, F.

    1988-05-01

    Infrared spectra of organic molecules, including frozen gases, aliphatic and aromatic polymers, complex molecules, and biological compounds are presented, and their changes due to fast ion bombardment are described. It is found that (1) the targets lose hydrogen preferentially and the stoichiometric H/C decreases; (2) the materials become more absorbing and their color changes from white to black as the ion dose increases; (3) the crystallinity, if present initially, is destroyed, and bombarded material is amorphous although microcrystallinity cannot be ruled out; (4) the skeletal vibrations are changed, indicating the occurrence of cross-lining and the formation of tridimensional networks. The astrophysical and space mission implications of these findings are addressed.

  10. Infrared absorption spectra of molecular crystals: Possible evidence for small-polaron formation?

    NASA Astrophysics Data System (ADS)

    Pržulj, Željko; Čevizović, Dalibor; Zeković, Slobodan; Ivić, Zoran

    2008-09-01

    The temperature dependence of the position of the so-called anomalous band peaked at 1650cm in the IR-absorption spectrum of crystalline acetanilide (ACN) is theoretically investigated within the small-polaron theory. Its pronounced shift towards the position of the normal band is predicted with the rise of temperature. Interpretation of the IR-absorption spectra in terms of small-polaron model has been critically assessed on the basis of these results.

  11. Absorption Features in Soil Spectra Assessment.

    PubMed

    Vašát, Radim; Kodešová, Radka; Borůvka, Luboš; Jakšík, Ondřej; Klement, Aleš; Drábek, Ondřej

    2015-12-01

    From a wide range of techniques appropriate to relate spectra measurements with soil properties, partial least squares (PLS) regression and support vector machines (SVM) are most commonly used. This is due to their predictive power and the availability of software tools. Both represent exclusively statistically based approaches and, as such, benefit from multiple responses of soil material in the spectrum. However, physical-based approaches that focus only on a single spectral feature, such as simple linear regression using selected continuum-removed spectra values as a predictor variable, often provide accurate estimates. Furthermore, if this approach extends to multiple cases by taking into account three basic absorption feature parameters (area, width, and depth) of all occurring features as predictors and subjecting them to best subset selection, one can achieve even higher prediction accuracy compared with PLS regression. Here, we attempt to further extend this approach by adding two additional absorption feature parameters (left and right side area), as they can be important diagnostic markers, too. As a result, we achieved higher prediction accuracy compared with PLS regression and SVM for exchangeable soil pH, slightly higher or comparable for dithionite-citrate and ammonium oxalate extractable Fe and Mn forms, but slightly worse for oxidizable carbon content. Therefore, we suggest incorporating the multiple linear regression approach based on absorption feature parameters into existing working practices. PMID:26555184

  12. Absorption Features in Soil Spectra Assessment.

    PubMed

    Vašát, Radim; Kodešová, Radka; Borůvka, Luboš; Jakšík, Ondřej; Klement, Aleš; Drábek, Ondřej

    2015-12-01

    From a wide range of techniques appropriate to relate spectra measurements with soil properties, partial least squares (PLS) regression and support vector machines (SVM) are most commonly used. This is due to their predictive power and the availability of software tools. Both represent exclusively statistically based approaches and, as such, benefit from multiple responses of soil material in the spectrum. However, physical-based approaches that focus only on a single spectral feature, such as simple linear regression using selected continuum-removed spectra values as a predictor variable, often provide accurate estimates. Furthermore, if this approach extends to multiple cases by taking into account three basic absorption feature parameters (area, width, and depth) of all occurring features as predictors and subjecting them to best subset selection, one can achieve even higher prediction accuracy compared with PLS regression. Here, we attempt to further extend this approach by adding two additional absorption feature parameters (left and right side area), as they can be important diagnostic markers, too. As a result, we achieved higher prediction accuracy compared with PLS regression and SVM for exchangeable soil pH, slightly higher or comparable for dithionite-citrate and ammonium oxalate extractable Fe and Mn forms, but slightly worse for oxidizable carbon content. Therefore, we suggest incorporating the multiple linear regression approach based on absorption feature parameters into existing working practices.

  13. Calculation and Comparative Analysis of the IR Spectra of Homobrassinolide and (22S,23S)-Homobrassinolide

    NASA Astrophysics Data System (ADS)

    Andrianov, V. M.; Korolevich, M. V.

    2015-09-01

    Normal vibrational frequencies and absolute IR band intensities of the biologically active steroid phytohormones homobrassinolide and (22S,23S)-homobrassinolide were calculated in the framework of an original approach that combined classical analysis of normal modes using molecular mechanics with quantum-chemical estimation of the absolute intensities. IR absorption bands were interpreted based on a comparison of the experimental and theoretical absorption spectra. The impact of structural differences in the side chains of these molecules on the formation of their IR spectra in the region 1500-950 cm -1 was estimated.

  14. Electronic and oscillation absorption spectra of blood plamsa at surgical diseases of thyroid gland

    NASA Astrophysics Data System (ADS)

    Guminetskiy, S. G.; Motrich, A. V.; Poliansky, I. Y.; Hyrla, Ya. V.

    2011-09-01

    The results of investigating the absorption spectra of blood plasma in the visible and infrared parts of spectra obtained using the techniques of spherical photometer and spectrophotometric complex "Specord IR75" are presented. The possibility of using these spectra for diagnoses the cases of diffuse toxic goiter and nodular goiter and control of treatment process in postsurgical period in the cases of thyroid gland surgery is estimated.

  15. Electronic and oscillation absorption spectra of blood plamsa at surgical diseases of thyroid gland

    NASA Astrophysics Data System (ADS)

    Guminetskiy, S. G.; Motrich, A. V.; Poliansky, I. Y.; Hyrla, Ya. V.

    2012-01-01

    The results of investigating the absorption spectra of blood plasma in the visible and infrared parts of spectra obtained using the techniques of spherical photometer and spectrophotometric complex "Specord IR75" are presented. The possibility of using these spectra for diagnoses the cases of diffuse toxic goiter and nodular goiter and control of treatment process in postsurgical period in the cases of thyroid gland surgery is estimated.

  16. ATR FT-IR H 2O spectra of acidic aqueous solutions. Insights about proton hydration

    NASA Astrophysics Data System (ADS)

    Śmiechowski, Maciej; Stangret, Janusz

    2008-04-01

    Proton hydration in aqueous solutions has been recently characterised in our laboratory by means of vibrational spectra of HDO isotopically diluted in H 2O [M. Śmiechowski, J. Stangret, J. Chem. Phys. 125 (2006) 204508]. Here, we attempt to study quantitatively H 2O spectra of acidic aqueous solutions. In principle, H 2O spectra provide more information about the structural state of water molecules, resulting from oscillator couplings in the system, but they are much more difficult in interpretation, when compared with HDO spectra. The spectra of aqueous solutions of monoprotic acids (HCl, HClO 4, HPF 6) have been measured by Attenuated Total Reflectance (ATR) FT-IR spectroscopy. Spectral data have been analysed in a way that led to removal of the contribution of bulk water, in order to separate the spectra of solute-affected water only. The analysis has been focused on the infinite dilution limit behaviour of the spectrum. Changes induced in the affected spectra by temperature have been studied for HPF 6 solutions at 25-45 °C. The stretching vibration fundamental has been found to be primarily affected by counter-anion. Proton-affected H 2O spectrum shows the presence of very wide absorption bands in the range, where bulk water shows negligible own absorption, rather than "absorption continua". They could be adequately resolved into analytical components. These bands have been unaffected by temperature and loosely correlated with the stretching fundamental, as indicated by 2D IR correlation spectra. All spectral effects of the studied acids on H 2O in solution have been quantitatively evidenced and discussed. They seem to be in accordance with the main conclusions about proton hydration derived from recent studies of HDO spectra mentioned above.

  17. Reevaluation of lunar and Martian spectra in the mid-IR region.

    PubMed

    Plendl, J N; Plendl, H S

    1982-12-15

    A reference point method has been developed to correct infrared spectra from the moon and other celestial objects for selective absorption in the earth's atmosphere. The method is applied to lunar spectra that were obtained 2.3 km above sea level within the two atmospheric IR windows. The results indicate that SiO(2) and Al(2)O(3) are major mineral constituents in the four large surface areas analyzed in agreement with the localized probings at spacecraft landing sites. In addition, IR spectra from Martian dust clouds that were observed from the Mariner 9 spacecraft are examined. The principal sources of radiation in this case appear to be Al(2)O(3) and sulfur.

  18. Optical absorption spectra of dications of carotenoids

    SciTech Connect

    Jeevarajan, J.A.; Wei, C.C.; Jeevarajan, A.S.; Kispert, L.D.

    1996-04-04

    Quantitative optical absorption spectra of the cation radicals and the dications of canthaxanthin (I), {beta}carotene (II), 7`-cyano-7`-ethoxycarbonyl-7`-apo-{beta}-carotene (III), and 7`,7`-dimethyl-7`-apo-{beta}-carotene (IV) in dichloromethane solution are reported. Exclusive formation of dications occurs when the carotenoids are oxidized with ferric chloride. Addition of neutral carotenoid to the dications results in equilibrium formation of cation radicals. Oxidation with iodine in dichloromethane affords only cation radicals; electrochemical oxidation under suitable conditions yields both dications and cation radicals. Values of the optical parameters depend on the nature of the oxidative medium. The oscillator strengths calculated for gas phase cation radicals and dications of I-IV using the INDO/S method show the same trend as the experimental values. 31 refs., 4 figs., 2 tabs.

  19. Anharmonic IR Spectra of Biomolecules: Nucleobases and Their Oligomers

    NASA Astrophysics Data System (ADS)

    Barone, Vincenzo; Biczysko, Malgorzata; Bloino, Julien; Carnimeo, Ivan; Fornaro, Teresa

    2014-06-01

    Computational spectroscopy techniques have become in the last years effective means to predict and characterize spectra, such as infrared, for molecular systems of increasing dimensions with account for different environments. We are actively developing a comprehensive and robust computational protocol, set within a perturbative vibrational framework [1], aimed at a quantitative reproduction of the spectra of biomolecules. In order to model the vibrational spectra of weakly bound molecular complexes, dispersion interactions should be taken into proper account. In this work, we present critical assessment of dispersion-corrected DFT approaches for anharmonic vibrational frequency calculations. It is shown that fully anharmonic IR spectra, simulated through full and reduced-dimensionality generalized second-order vibrational perturbation theory (GVPT2)[1] with the potential energy surfaces computed with the B3LYP-D3 approach, may be used to interpret experimental data of nucleobases and their complexes[2] by the direct comparison of experimental IR spectra with their theoretical anharmonic counterpart, taking into account also overtones and combination bands. [1] V. Barone, M. Biczysko, J. Bloino, Phys. Chem. Chem. Phys., 2014,16, 1759-1787 [2] T. Fornaro, M. Biczysko, S. Monti, V. Barone, Phys. Chem. Chem. Phys., 2014, DOI: 10.1039/C3CP54724H

  20. Determination of molar IR absorptivities and their errors

    NASA Astrophysics Data System (ADS)

    Staat, H.; Korte, E. H.

    1984-03-01

    Molar absorptivities of band maxima of acetonitrile, n-heptane, benzene, and toluene were determined from difference spectra. The statistical and most important systematic errors are given. Recently, we studied statistical and systematic errors occuring in the determination of IR absorptivities ɛ of liquids (ref. 1). Considerable systematic errors are caused by reflection losses at the outer and inner surfaces of the cell windows. It was shown that these are compensated for if the ratio of two transmittance spectra (T 1, T 2) due to different sample thicknesses (d 1, d 2) is used: In such a case Bouguer—Lambert-Beer's laws leads to ? where c denotes the concentration. The reliability of the absorptivities derived in this way, is mainly affected by the statistical error comprising the standard deviations of the transmittance measurements as well as by the systematic errors from multiple beam interference within the cell (the fringes do not compensate for each other because of their different periods) and from the finite slit width. Experimental conditions can be chosen so that errors from beam convergence, polarization, temperature variations, and thermal emission are negligible. The influences on the transmittance measurement by drift, unwanted radiation, reliability of wavenumber reading, and non-linearity of the detector system are not considered. The molar absorptivities of band maxima of acetonitrile, n-heptane, benzene, and toluene have been determined using equation (1) and are listed in the Table. The values ofΔd employed were in the order of 10 μm to 40 μm, therefore, the strongest bands could not be evaluated. The statistical error was calculated from ? and the systematic error due to finite spectral slit width (s) from ? with the band half-width 2γ. The deviation of the cell from planoparallel shape has been taken into account quantitatively, this is different to the method used previously (ref. 1). If the cell is wedge shaped so that its thickness

  1. Accurate Anharmonic IR Spectra from Integrated Cc/dft Approach

    NASA Astrophysics Data System (ADS)

    Barone, Vincenzo; Biczysko, Malgorzata; Bloino, Julien; Carnimeo, Ivan; Puzzarini, Cristina

    2014-06-01

    The recent implementation of the computation of infrared (IR) intensities beyond the double harmonic approximation [1] paved the route to routine calculations of infrared spectra for a wide set of molecular systems. Contrary to common beliefs, second-order perturbation theory is able to deliver results of high accuracy provided that anharmonic resonances are properly managed [1,2]. It has been already shown for several small closed- and open shell molecular systems that the differences between coupled cluster (CC) and DFT anharmonic wavenumbers are mainly due to the harmonic terms, paving the route to introduce effective yet accurate hybrid CC/DFT schemes [2]. In this work we present that hybrid CC/DFT models can be applied also to the IR intensities leading to the simulation of highly accurate fully anharmonic IR spectra for medium-size molecules, including ones of atmospheric interest, showing in all cases good agreement with experiment even in the spectral ranges where non-fundamental transitions are predominant[3]. [1] J. Bloino and V. Barone, J. Chem. Phys. 136, 124108 (2012) [2] V. Barone, M. Biczysko, J. Bloino, Phys. Chem. Chem. Phys., 16, 1759-1787 (2014) [3] I. Carnimeo, C. Puzzarini, N. Tasinato, P. Stoppa, A. P. Charmet, M. Biczysko, C. Cappelli and V. Barone, J. Chem. Phys., 139, 074310 (2013)

  2. Time-resolved Absorption Spectra of the Laser-dressed Hydrogen Atom

    NASA Astrophysics Data System (ADS)

    Murakami, Mitsuko; Chu, Shih-I.

    2013-05-01

    A theoretical study of the transient absorption spectra for the laser-dressed hydrogen atom based on the accurate numerical solution of the time-dependent Schrödinger equation is presented. The timing of absorption is controlled by the time delay between an isolated extreme ultraviolet (XUV) pulse and a dressing infrared (IR) field. We identify two different kinds of physical processes in the spectra. One is the formation of dressed states, signified by the appearance of sidebands between the XUV absorption lines separated by one IR-photon energy. We show that their population is maximized when the XUV pulse coincides with the zero-crossing of the IR field, and that their energy can be manipulated by using a chirped IR field. The other process is the dynamical AC Stark shift induced by the IR field and probed by the XUV pulse. Our calculations indicate that the accidental degeneracy of the hydrogen atom leads to the multiple splittings of each XUV absorption line whose separations change in response to a slowly-varying IR envelope. Furthermore, we observe the Autler-Townes doublets for the n=2 and 3 states using the 656 nm dressing field, but their separation does not agree with the prediction by the conventional 3-level model that neglects the dynamical AC Stark effects.

  3. IRSFRINGE: Interactive tool for fringe removal from Spitzer IRS spectra

    NASA Astrophysics Data System (ADS)

    IRS Team at Cornell University

    2016-02-01

    IRSFRINGE is an IDL-based GUI package that allows observers to interactively remove fringes from IRS spectra. Fringes that originate from the detector subtrates are observed in the IRS Short-High (SH) and Long-High (LH) modules. In the Long-Low (LL) module, another fringe component is seen as a result of the pre-launch change in one of the LL filters. The fringes in the Short-Low (SL) module are not spectrally resolved. the fringes are already largely removed in the pipeline processing when the flat field is applied. However, this correction is not perfect and remaining fringes can be removed with IRSFRINGE from data in each module. IRSFRINGE is available as a stand-alone package and is also part of the Spectroscopic Modeling, Analysis and Reduction Tool (SMART, ascl:1210.021).

  4. IR, Raman and SERS spectra of propantheline bromide.

    PubMed

    Baraldi, C; Freguglia, G; Tinti, A; Sparta, M; Alexandrova, A N; Gamberini, M C

    2013-02-15

    The two known propantheline bromide polymorphs (form I and form II) were studied and characterized by a multianalytical approach. In the present work, the identification of propantheline bromide polymorphic forms through vibrational IR spectroscopies are presented and for the first time Raman microscopy and hot stage Raman microscopy (HSRM) studies are reported. Finally, quantum mechanical calculations were performed. For assisting the assignment of the experimental picks, the two IR spectra of the most and least stable representatives of a set of 56 conformers are calculated and studied. DSC thermograms data, are also reported. The surface enhanced Raman scattering (SERS) spectrum was also recorded in a silver colloid; it could be inferred that propantheline bromide is adsorbed on silver colloid through the oxygen atom with the molecular plane perpendicular to the metal surface.

  5. Photochemical properties of trans-1-chloro-3,3,3-trifluoropropene (trans-CHCl═CHCF3): OH reaction rate constant, UV and IR absorption spectra, global warming potential, and ozone depletion potential.

    PubMed

    Orkin, Vladimir L; Martynova, Larissa E; Kurylo, Michael J

    2014-07-17

    Measurements of the rate constant for the gas-phase reactions of OH radicals with trans-1-chloro-3,3,3-trifluoropropene (trans-CHCl═CHCF3) were performed using a flash photolysis resonance-fluorescence technique over the temperature range 220-370 K. The reaction rate constant exhibits a noticeable curvature of the temperature dependence in the Arrhenius plot, which can be represented by the following expression: kt-CFP (220-370 K) = 1.025 × 10(-13) × (T/298)(2.29) exp(+384/T) cm(3 )molecule(-1) s(-1). The room-temperature rate constant was determined to be kt-CFP (298 K) = (3.29 ± 0.10) × 10(-13) cm(3) molecule(-1) s(-1), where the uncertainty includes both two standard errors (statistical) and the estimated systematic error. For atmospheric modeling purposes, the rate constant below room temperature can be represented by the following expression: kt-CFP (220-298 K) = (7.20 ± 0.46) × 10(-13) exp[-(237 ± 16)/T] cm(3) molecule(-1) s(-1). There was no difference observed between the rate constants determined at 4 kPa (30 Torr) and 40 kPa (300 Torr) at both 298 and 370 K. The UV and IR absorption cross sections of this compound were measured at room temperature. The atmospheric lifetime, global warming potential, and ozone depletion potential of trans-CHCl═CHCF3 were estimated. PMID:24955760

  6. Temperature dependence of amino acid side chain IR absorptions in the amide I' region.

    PubMed

    Anderson, Benjamin A; Literati, Alex; Ball, Borden; Kubelka, Jan

    2014-05-01

    Amide I' IR spectra are widely used for studies of structural changes in peptides and proteins as a function of temperature. Temperature dependent absorptions of amino acid side-chains that overlap the amide I' may significantly complicate the structural analyses. While the side-chain IR spectra have been investigated previously, thus far their dependence on temperature has not been reported. Here we present the study of the changes in the IR spectra with temperature for side-chain groups of aspartate, glutamate, asparagine, glutamine, arginine, and tyrosine in the amide I' region (in D2O). Band fitting analysis was employed to extract the temperature dependence of the individual spectral parameters, such as peak frequency, integrated intensity, band width, and shape. As expected, the side-chain IR bands exhibit significant changes with temperature. The majority of the spectral parameters, particularly the frequency and intensity, show linear dependence on temperature, but the direction and magnitude vary depending on the particular side-chain group. The exception is arginine, which exhibits a distinctly nonlinear frequency shift with temperature for its asymmetric CN3H5(+) bending signal, although a linear fit can account for this change to within ~1/3 cm(-1). The applicability of the determined spectral parameters for estimations of temperature-dependent side-chain absorptions in peptides and proteins are discussed.

  7. Experimental effects on IR reflectance spectra: particle size and morphology

    NASA Astrophysics Data System (ADS)

    Beiswenger, Toya N.; Myers, Tanya L.; Brauer, Carolyn S.; Su, Yin-Fong; Blake, Thomas A.; Ertel, Alyssa B.; Tonkyn, Russell G.; Szecsody, James E.; Johnson, Timothy J.; Smith, Milton O.; Lanker, Cory L.

    2016-05-01

    For geologic and extraterrestrial samples it is known that both particle size and morphology can have strong effects on a species' infrared reflectance spectra. Due to such effects, the reflectance spectra cannot be predicted from the absorption coefficients alone. This is because reflectance is both a surface as well as a bulk phenomenon, incorporating both dispersion as well as absorption effects. The same spectral feature can even be observed as either a maximum or minimum. The complex effects depend on particle size and preparation, as well as the relative amplitudes of the optical constants n and k, i.e. the real and imaginary components of the complex refractive index. While somewhat oversimplified, upward-going amplitude in the reflectance spectrum usually results from surface scattering, i.e. rays that have been reflected from the surface without penetration, whereas downward-going peaks are due to either absorption or volume scattering, i.e. rays that have penetrated or refracted into the sample interior and are not reflected. While the effects are known, we report seminal measurements of reflectance along with quantified particle size of the samples, the sizing obtained from optical microscopy measurements. The size measurements are correlated with the reflectance spectra in the 1.3 - 16 micron range for various bulk materials that have a combination of strong and weak absorption bands in order to understand the effects on the spectral features as a function of the mean grain size. We report results for both anhydrous sodium sulfate Na2SO4 as well as ammonium sulfate (NH4)2SO4; the optical constants have been measured for (NH4)2SO4. To go a step further from the laboratory and into the field we explore our understanding of particle size effects on reflectance spectra using standoff detection at distances of up to 160 meters in a field experiment. The studies have shown that particle size has a strong influence on the measured reflectance spectra of such

  8. Spatially Resolved Mid-IR Spectra from Meteorites; Linking Composition, Crystallographic Orientation and Spectra on the Micro-Scale

    NASA Astrophysics Data System (ADS)

    Stephen, N. R.

    2016-08-01

    IR spectroscopy is used to infer composition of extraterrestrial bodies, comparing bulk spectra to databases of separate mineral phases. We extract spatially resolved meteorite-specific spectra from achondrites with respect to zonation and orientation.

  9. A novel CO 2 gas analyzer based on IR absorption

    NASA Astrophysics Data System (ADS)

    Zhang, Guangjun; Wu, Xiaoli

    2004-08-01

    Carbon dioxide (CO 2) gas analyzer can be widely used in many fields. A novel CO 2 gas analyzer based on infrared ray (IR) absorption is presented sufficiently in this paper. Applying Lambert-Beer Law, a novel space-double-beam optical structure is established successfully. The optical structure includes an IR source, a gas cell, a bandpass filter with a transmission wavelength at 4.26 μm, another bandpass filter with a transmission wavelength at 3.9 μm, and two IR detectors. Based on Redial Basic Function (RBF) artificial neural network, the measuring model of IR CO 2 analyzer is established with a high accuracy. A dynamic compensation filter is effectively designed to improve the dynamic characteristic of the IR CO 2 analyzer without gas pump. The IR CO 2 analyzer possesses the advantages of high accuracy and mechanical reliability with small volume, lightweight, and low-power consumption. Therefore, it can be used in such relevant fields as environmental protection, processing control, chemical analysis, medical diagnosis, and space environmental and control systems.

  10. Spitzer IRS Spectra of Basaltic Asteroids: Preliminary Results

    NASA Technical Reports Server (NTRS)

    Lim, Lucy F.; Emery, Joshua P.; Moskovitz, Nick; Stewart, Heather; Marchis, Frank

    2008-01-01

    We present preliminary results of a Spitzer program to observe the 5.2--38 micron spectra of small basaltic asteroids using the Spitzer IRS (Infrared Spectrograph). Our targets include members of the dynamical family of the unique large differentiated asteroid 4 Vesta ("Vestoids"), four outer-main-belt basaltic asteroids whose orbits exclude them from originating on 4 Vesta, and the basaltic near-Earth asteroid (NEA) 4055 Magellan. We will compare the compositions and thermophysical properties of the non-Vestoid objects with those of the dynamical vestoids to provide insight on the extent of metal-silicate differentiation on planetsimals during the epoch of planet formation in the early Solar System. As of this writing, spectra of asteroids 10537 (1991 RY16) and 2763 Jeans have been returned. Analysis of these data are ongolng. Observations of 956 Elisa, 2653 Principia, 4215 Kamo, 7472 Kumakiri, and 1459 Magnya have been scheduled and are expected to be available by the time of the DPS meeting. NIR spectra and lightcurves o f the target asteroids are also being observed in support of this program.

  11. [IR and Raman spectra studies of Rotundine based on DFT].

    PubMed

    Li, Jun-Ping; Zhou, Guang-Ming; Zhang, Li-Jun; Cheng, Hong-Mei; Qin, Hong-Ying

    2014-11-01

    Infrared spectroscopy (IR), the normal Raman spectroscopy (NRS) and the surface enhanced Raman spectroscopy (SERS) in new Ag/Cu nanomaterial of Rotundine were studied in the present paper. The IR and the NRS of Rotundine were calculated by the density functional theory (DFT) using B3LYP/6-311+G(d, p), then the spectral intensity graph of Rotundine were given. The vibrational peaks were assigned comprehensively by the visualization software of Gauss view 5. 0. Rotundine has obvious infrared and Raman vibrational peak in the wave number range of 3 300-2500 and 1 800-600 cm(-1). SnCl2 and PVP was used as capping agent for the silver nanoparticles in SERS of Rotundine. Finally, by using the method of cyclic immersion well dispersed silver nanoparticles was obtained and achieved good enhancement effect. This molecule acquired strong selective enhancement vibration peak, In the wave number ranges of 1 500-1 400 and 1 000-700 cm(-1) the enhancement effect is most obvious. After analyzed, the methylene of this molecule is adsorbed on the silver nanoparticles surface and the angle between the benzene ring and the silver substrate is close to 90 degrees. The theoretically calculated spectra of Rotundine are consistent with the obtained experimental spectra. There are some differences may be due to the interaction forces between molecules and so on. The visualization software displayed the structure characteristics and molecular group vibration of this molecular visually and provided important basis for assigning the vibrational peaks. Rotundine is an important traditional Chinese medicine agent contained in many kinds of sedative drugs. The study provides a strong basis for the rapid, feature and trace identification of Rotundine and also supplies important reference for the biological role of central inhibition of analgesic drugs. PMID:25752044

  12. Temperature dependence of C-terminal carboxylic group IR absorptions in the amide I‧ region

    NASA Astrophysics Data System (ADS)

    Anderson, Benjamin A.; Literati, Alex; Ball, Borden; Kubelka, Jan

    2015-01-01

    Studies of structural changes in peptides and proteins using IR spectroscopy often rely on subtle changes in the amide I‧ band as a function of temperature. However, these changes can be obscured by the overlap with other absorptions, namely the side-chain and terminal carboxylic groups. The former were the subject of our previous report (Anderson et al., 2014). In this paper we investigate the IR spectra of the asymmetric stretch of α-carboxylic groups for amino acids representing all major types (Gly, Ala, Val, Leu, Ser, Thr, Asp, Glu, Lys, Asn, His, Trp, Pro) as well as the C-terminal groups of three dipeptides (Gly-Gly, Gly-Ala, Ala-Gly) in D2O at neutral pH. Experimental temperature dependent IR spectra were analyzed by fitting of both symmetric and asymmetric pseudo-Voigt functions. Qualitatively the spectra exhibit shifts to higher frequency, loss in intensity and narrowing with increased temperature, similar to that observed previously for the side-chain carboxylic groups of Asp. The observed dependence of the band parameters (frequency, intensity, width and shape) on temperature is in all cases linear: simple linear regression is therefore used to describe the spectral changes. The spectral parameters vary between individual amino acids and show systematic differences between the free amino acids and dipeptides, particularly in the absolute peak frequencies, but the temperature variations are comparable. The relative variations between the dipeptide spectral parameters are most sensitive to the C-terminal amino acid, and follow the trends observed in the free amino acid spectra. General rules for modeling the α-carboxylic IR absorption bands in peptides and proteins as the function of temperature are proposed.

  13. Temperature dependence of C-terminal carboxylic group IR absorptions in the amide I' region.

    PubMed

    Anderson, Benjamin A; Literati, Alex; Ball, Borden; Kubelka, Jan

    2015-01-01

    Studies of structural changes in peptides and proteins using IR spectroscopy often rely on subtle changes in the amide I' band as a function of temperature. However, these changes can be obscured by the overlap with other absorptions, namely the side-chain and terminal carboxylic groups. The former were the subject of our previous report (Anderson et al., 2014). In this paper we investigate the IR spectra of the asymmetric stretch of α-carboxylic groups for amino acids representing all major types (Gly, Ala, Val, Leu, Ser, Thr, Asp, Glu, Lys, Asn, His, Trp, Pro) as well as the C-terminal groups of three dipeptides (Gly-Gly, Gly-Ala, Ala-Gly) in D₂O at neutral pH. Experimental temperature dependent IR spectra were analyzed by fitting of both symmetric and asymmetric pseudo-Voigt functions. Qualitatively the spectra exhibit shifts to higher frequency, loss in intensity and narrowing with increased temperature, similar to that observed previously for the side-chain carboxylic groups of Asp. The observed dependence of the band parameters (frequency, intensity, width and shape) on temperature is in all cases linear: simple linear regression is therefore used to describe the spectral changes. The spectral parameters vary between individual amino acids and show systematic differences between the free amino acids and dipeptides, particularly in the absolute peak frequencies, but the temperature variations are comparable. The relative variations between the dipeptide spectral parameters are most sensitive to the C-terminal amino acid, and follow the trends observed in the free amino acid spectra. General rules for modeling the α-carboxylic IR absorption bands in peptides and proteins as the function of temperature are proposed.

  14. Optical absorption spectra of pairs of small metal particles

    NASA Astrophysics Data System (ADS)

    Quinten, M.; Kreibig, U.; Schönauer, D.; Genzel, L.

    1985-06-01

    The influence of plasma resonance coupling in small Au particle pairs on their optical properties was calculated including retardation effects. The latter prove to be important for sizes above 15 nm. For pairs of smaller particles a Maxwell-Garnett formula is derived and absorption spectra are calculated explicitly. Comparison with optical absorption spectra measured on aggregated Au particle hydrosols, gives good agreement concerning the splitting up of the dipolar single-particle plasma resonance band.

  15. An investigation of a mathematical model for atmospheric absorption spectra

    NASA Technical Reports Server (NTRS)

    Niple, E. R.

    1979-01-01

    A computer program that calculates absorption spectra for slant paths through the atmosphere is described. The program uses an efficient convolution technique (Romberg integration) to simulate instrument resolution effects. A brief information analysis is performed on a set of calculated spectra to illustrate how such techniques may be used to explore the quality of the information in a spectrum.

  16. Mid-IR Spectra Herbig Ae/Be Stars

    NASA Technical Reports Server (NTRS)

    Wooden, Diane; Witteborn, Fred C. (Technical Monitor)

    1997-01-01

    Herbig Ae/Be stars are intermediate mass pre-main sequence stars, the higher mass analogues to the T Tauri stars. Because of their higher mass, they are expected form more rapidly than the T Tauri stars. Whether the Herbig Ae/Be stars accrete only from collapsing infalling envelopes or whether accrete through geometrically flattened viscous accretion disks is of current debate. When the Herbig Ae/Be stars reach the main sequence they form a class called Vega-like stars which are known from their IR excesses to have debris disks, such as the famous beta Pictoris. The evolutionary scenario between the pre-main sequence Herbig Ae/Be stars and the main sequence Vega-like stars is not yet revealed and it bears on the possibility of the presence of Habitable Zone planets around the A stars. Photometric studies of Herbig Ae/Be stars have revealed that most are variable in the optical, and a subset of stars show non-periodic drops of about 2 magnitudes. These drops in visible light are accompanied by changes in their colors: at first the starlight becomes reddened, and then it becomes bluer, the polarization goes from less than 0.1 % to roughly 1% during these minima. The theory postulated by V. Grinnin is that large cometary bodies on highly eccentric orbits occult the star on their way to being sublimed, for systems that are viewed edge-on. This theory is one of several controversial theories about the nature of Herbig Ae/Be stars. A 5 year mid-IR spectrophotometric monitoring campaign was begun by Wooden and Butner in 1992 to look for correlations between the variations in visible photometry and mid-IR dust emission features. Generally the approximately 20 stars that have been observed by the NASA Ames HIFOGS spectrometer have been steady at 10 microns. There are a handful, however, that have shown variable mid-IR spectra, with 2 showing variations in both the continuum and features anti-correlated with visual photometry, and 3 showing variations in the emission

  17. Terahertz absorption spectra and potential energy distribution of liquid crystals.

    PubMed

    Chen, Zezhang; Jiang, Yurong; Jiang, Lulu; Ma, Heng

    2016-01-15

    In this work, the terahertz (THz) absorption spectra of a set of nematic liquid crystals were studied using the density functional theories (DFT). An accurate assignment of the vibrational modes corresponding to absorption frequencies were performed using potential energy distribution (PED) in a frequency range of 0-3 THz. The impacts of different core structures on THz absorption spectra were discussed. The results indicate that scope of application must be considered in the LC-based THz device designing. This proposed work may give a useful suggestion on the design of novel liquid crystal material in THz wave. PMID:26476072

  18. Two-dimensional (2D) infrared (IR) correlation spectroscopy for dynamic absorption behavior of oleic acid (OA) onto silica gel

    NASA Astrophysics Data System (ADS)

    Genkawa, Takuma; Kanematsu, Wataru; Shinzawa, Hideyuki

    2014-07-01

    Dynamic absorption behavior of oleic acid (OA) onto silica gel was probed by infrared (IR) spectroscopy. Once OA is injected into silica gel placed on a horizontal attenuated total reflectance prism, the silica gel starts to absorb the OA molecules due to the molecular-level interaction based on hydrogen bonding between the COOH of OA and the OH of silica gel. The substantial level of variation of spectral feature is readily observed during the absorption of OA onto silica gel. 2D correlation analysis of the time-dependent IR spectra reveals fine details of absorption dynamics of OA molecules depending on the molecular structure. The predominant absorption of the monomers occurs at the onset of the absorption, and it is then quickly followed by the decrease in the dimers. In other words, the dissociation of the liquid crystals occurs via the disuniting of the tightly packed OA dimers.

  19. Identification of THz absorption spectra of chemicals using neural networks

    NASA Astrophysics Data System (ADS)

    Shen, Jingling; Jia, Yan; Liang, Meiyan; Chen, Sijia

    2007-09-01

    Absorption spectra in the range from 0.2 to 2.6 THz of chemicals such as illicit drugs and antibiotics obtaining from Terahertz time-domain spectroscopy technique were identified successfully by artificial neural networks. Back Propagation (BP) and Self-Organizing Feature Map (SOM) were investigated to do the identification or classification, respectively. Three-layer BP neural networks were employed to identify absorption spectra of nine illicit drugs and six antibiotics. The spectra of the chemicals were used to train a BP neural network and then the absorption spectra measured in different times were identified by the trained BP neural network. The average identification rate of 76% was achieved. SOM neural networks, another important neural network which sorts input vectors by their similarity, was used to sort 60 absorption spectra from 6 illicit drugs. The whole network was trained by setting a 20×20 and a 16×16 grid, and both of them had given satisfied clustering results. These results indicate that it is feasible to apply BP and SOM neural networks model in the field of THz spectra identification.

  20. FT-IR SOLUTION SPECTRA OF PROPYL SULFIDE, PROPYL SULFOXIDE, AND PROPYL SULFONE

    EPA Science Inventory

    FT-IR spectra were obtained of 0.5% volumetric solutions of propyl sulfide, propyl sulfoxide, and propyl sulfone in hexane, CCl4, CS2, and CHCl3 to assist in the assignment of FT-IR-PAS spectra of propyl sulfoxide sorbed within the structure of several peats and onto cellulose. T...

  1. Simulation of the structures and calculation of IR Spectra of (22 s,23 s)-Homobrassinolide conformers

    NASA Astrophysics Data System (ADS)

    Andrianov, V. M.; Korolevich, M. V.

    2012-07-01

    Frequencies and intensities of normal vibrations of (22 S,23 S)-homobrassinolide, a biologically active representative of steroidal phytohormones, were calculated within the framework of an original approach that combined a classical analysis of normal vibrations by a molecular mechanics method with a quantum-chemical estimation of absolute intensities. Two molecular structures with different side-chain conformations were considered. The molecular IR absorption bands in the range 1500-900 cm-1 were interpreted for the first time and the influence of the side-chain conformation on the IR spectrum was analyzed based on a comparison of the experimental and calculated spectra.

  2. Demonstrating Absorption Spectra Using Commercially Available Incandescent Light Bulbs

    NASA Astrophysics Data System (ADS)

    Birriel, Jennifer J.

    In introductory astronomy courses, I typically introduce the three types of spectra: continuous, absorption line, and emission line. It is standard practice to use an ordinary incandescent light bulb to demonstrate the production of a continuous spectrum, and gas discharge tubes to demonstrate the production of an emission line spectrum. The concept of an absorption spectrum is more difficult for students to grasp. A variety of commercially available light bulbs can be used to demonstrate absorption spectra. Here I discuss the use of specialty incandescent light bulbs to demonstrate the phenomenon of absorption of the continuous spectrum produced by a hot tungsten filament. The bulbs examined include the GE Reveal bulb, yellow anti-insect lights, colored party bulbs, and an incandescent "black light" bulb. The bulbs can be used in a lecture or laboratory setting.

  3. C-H Hot Bands in the Near-IR Emission Spectra of Leonids

    NASA Technical Reports Server (NTRS)

    Freund, F. T.; Scoville, J.; Holm, R.; Seelemann, R.; Freund, M. M.

    2002-01-01

    The reported infrared (IR) emission spectra from 1999 Leonid fireballs show a 3.4 micron C-H emission band and unidentified bands at longer wavelengths. Upon atmospheric entry, the Leonid meteorites were flash-heated to temperatures around 2400K, which would destroy any organics on the surface of the meteorite grains. We propose that the nu(sub )CH emission band in the Leonid emission spectra arises from matrix-embedded C(sub n)-H-O entities that are protected from instant pyrolysis. Our model is based on IR absorption nu(sub )CH bands, which we observed in laboratory-grown MgO and natural olivine single crystals, where they arise from C(sub n)-H-O units imbedded in the mineral matrix, indicative of aliphatic -CH2- and -CH3 organics. Instead of being pyrolyzed, the C(sub n)-H-O entities in the Leonid trails become vibrationally excited to higher levels n = 1, 2, 3 etc. During de-excitation they emit at 3.4 microns, due to the (0 => 1) transition, and at longer wavelengths, due to hot bands. As a first step toward verifying this hypothesis we measured the C-H vibrational manifold of hexane (C6H14). The calculated positions of the (2 => l ) , (3 => 2), and possibly (4 => 3) hot bands agree with the Leonid emission bands at 3.5, 3.8 and 4.l microns.

  4. [Measurements of IR absorption across section and spectrum simulation of lewisite].

    PubMed

    Zhang, Yuan-peng; Wang, Hai-tao; Zhang, Lin; Yang, Liu; Guo, Xiao-di; Bai, Yun; Sun, Hao

    2015-02-01

    The vapor infrared transmission spectra of varied concentration of lewisite-1 were measured by a long-path FT-IR spectrometer, and its characteristic frequencies are 814, 930, 1563 cm(-1); their infrared absorption cross section (a) were determined using Beer-Lambert law. The corresponding sigma values are 3.89 +/- 0.01, 1.43 +/- 0.06, 4.47 +/- 0.05 ( X 10(-20) cm2 x molecule(-1)). Two little teeny peaks, 1158, 1288 cm(-1) were found in the measured spectra. Density Functional Theory (DFT) was applied to calculated the infrared spectra of lewisite-1, -2, -3 on a b3lyp/6-311+g(d, p) level by Gauss09 package. The vibration modes were assigned by Gaussview5. 08. The calculated spectra and experimental spectra are in good agreement with each other in 600-1600 cm(-1) range, for the Person's r is 0.9991. The calculated spectra also showed three characteristic frequencies (293, 360, 374 cm(-1)) related to As atom. 0.977 was a scaling factor we determined for lewisite-1 through least-square error and its performance to scale lewisite-1, -2, -3 was acceptable. The results of this work are useful for monitoring environmental atmospheric concentrations of lewisite. PMID:25970914

  5. Ab Initio Simulation of the Absorption Spectra of Photoexcited Carriers in TiO2 Nanoparticles.

    PubMed

    Nunzi, Francesca; De Angelis, Filippo; Selloni, Annabella

    2016-09-15

    We investigate the absorption spectra of photoexcited carriers in a prototypical anatase TiO2 nanoparticle using hybrid time dependent density functional theory calculations in water solution. Our results agree well with experimental transient absorption spectroscopy data and shed light on the character of the transitions. The trapped state is always involved, so that the SOMO/SUMO is the initial/final state for the photoexcited electron/hole absorption. For a trapped electron, final states in the low energy tail of the conduction band correspond to optical transitions in the IR, while final states at higher energy correspond to optical transitions in the visible. For a trapped hole, the absorption band is slightly blue-shifted and narrower in comparison to that of the electron, consistent with its deeper energy level in the band gap. Our calculations also show that electrons in shallow traps exhibit a broad absorption in the IR, resembling the feature attributed to conductive electrons in experimental spectra. PMID:27569530

  6. [Transient UV absorption spectra of artemisinin reacting with sodium hydroxide].

    PubMed

    Gao, Yan-Jun; Ping, Li; Yang, Li-Jun; Wang, Qi-Ming; Xue, Jun-Peng; Wu, Da-Cheng; Li, Rui-Xia

    2009-03-01

    UV absorption spectrum of artemisinin and transient absorption spectra of various concentrations of artemisinin reacting with sodium hydroxide were measured by using an intensified spectroscopic detector ICCD. The exposure time of each spectrum was 0.1 ms. Results indicate that artemisinin has an obvious UV absorption band centered at 212.52 nm and can react with sodium hydroxide easily. All absorption spectra of different concentrations of artemisinin reacting with sodium hydroxide have the similar changes, but the moment at which the changes happened is different. After adding sodium hydroxide into artemisinin in ethanol solution, there was a new absorption band centered at 288 nm appearing firstly. As reaction went on, the intensity of another absorption band centered at 260 nm increased gradually. At the end of the reaction, a continuous absorption band from 200 to 350 nm with the peak at 245 nm formed finally. No other transient absorption spectral data are available on the reaction of artemisinin with sodium hydroxide currently. The new spectral information obtained in this experiment provides very important experimental basis for understanding the properties of artemisinin reacting with alkaline medium and is useful for correctly using of artemisinin as a potential anticancer drug.

  7. Theoretical study on absorption and emission spectra of adenine analogues.

    PubMed

    Liu, Hongxia; Song, Qixia; Yang, Yan; Li, Yan; Wang, Haijun

    2014-04-01

    Fluorescent nucleoside analogues have attracted much attention in studying the structure and dynamics of nucleic acids in recent years. In the present work, we use theoretical calculations to investigate the structural and optical properties of four adenine analogues (termed as A1, A2, A3, and A4), and also consider the effects of aqueous solution and base pairing. The results show that the fluorescent adenine analogues can pair with thymine to form stable H-bonded WC base pairs. The excited geometries of both adenine analogues and WC base pairs are similar to the ground geometries. The absorption and emission maxima of adenine analogues are greatly red shifted compared with nature adenine, the oscillator strengths of A1 and A2 are stronger than A3 and A4 in both absorption and emission spectra. The calculated low-energy peaks in the absorption spectra are in good agreement with the experimental data. In general, the aqueous solution and base pairing can slightly red-shift both the absorption and emission maxima, and can increase the oscillator strengths of absorption spectra, but significantly decrease the oscillator strengths of A3 in emission spectra.

  8. Gas-phase absorption cross sections of 24 monocyclic aromatic hydrocarbons in the UV and IR spectral ranges

    NASA Astrophysics Data System (ADS)

    Etzkorn, Thomas; Klotz, Björn; Sørensen, Søren; Patroescu, Iulia V.; Barnes, Ian; Becker, Karl H.; Platt, Ulrich

    Absorption cross sections of 24 volatile and non-volatile derivatives of benzene in the ultraviolet (UV) and the infrared (IR) regions of the electromagnetic spectrum have been determined using a 1080 l quartz cell. For the UV a 0.5 m Czerny-Turner spectrometer coupled with a photodiode array detector (spectral resolution 0.15 nm) was used. IR spectra were recorded with an FT-IR spectrometer (Bruker IFS-88, spectral resolution 1 cm -1). Absolute absorption cross sections and the instrument function are given for the UV, while for the IR, absorption cross sections and integrated band intensities are reported. The study focused primarily on the atmospherically relevant methylated benzenes (benzene, toluene, o-xylene, m-xylene, p-xylene, 1,2,4-trimethylbenzene, 1,3,5-trimethylbenzene, ethylbenzene, styrene) and their ring retaining oxidation products (benzaldehyde, o-tolualdehyde, m-tolualdehyde, p-tolualdehyde, phenol, o-cresol, m-cresol, p-cresol, 2,3-dimethylphenol, 2,4-dimethylphenol, 2,5-dimethylphenol, 2,6-dimethylphenol, 3,4-dimethylphenol, 3,5-dimethylphenol, 2,4,6-trimethylphenol and ( E,Z)- and ( E,E)-2,4-hexadienedial). The UV absorption cross sections reported here can be used for the evaluation of DOAS spectra (Differential Optical Absorption Spectroscopy) for measurements of the above compounds in the atmosphere and in reaction chambers, while the IR absorption cross sections will primarily be useful in laboratory studies on atmospheric chemistry, where FT-IR spectrometry is an important tool.

  9. The effect of ionization on the infrared absorption spectra of PAHs: A preliminary report

    NASA Technical Reports Server (NTRS)

    Defrees, Doug J.; Miller, M. D.

    1989-01-01

    The emission lines observed in many interstellar IR sources at 3.28, 6.2, 7.7, 8.7, and 11.3 microns are theorized to originate from polycyclic aromatic hydrocarbons (PAHs). These assignments are based on analyses of lab IR spectra of neutral PAHs. However, it is likely that in the interstellar medium that PAHs are ionized, i.e., are positively charged. Besides, as pointed out by Allamandola et al., although the IR emission band spectrum resembles what one might expect from a mixture of PAHs, it does not match in details such as frequency, band profile, or relative intensities predicted from the absorption spectra of any known PAH molecule. One source of more information to test the PAH theory is ab initio molecular orbital theory. It can be used to compute, from first principles, the geometries, vibrational frequencies, and vibrational intensities for model PAH compounds which are difficult to study in the lab. The Gaussian 86 computer program was used to determine the effect of ionization on the infrared absorption spectra of several small PAHs: naphthalene and anthracene. A preliminary report is presented of the results of these calculations.

  10. Infrared Cavity Ringdown Laser Absorption Spectroscopy (IR-CRLAS) in low pressure flames

    SciTech Connect

    Scherer, J.J.; Rakestraw, D.J.

    1996-12-31

    The authors have employed Infrared Cavity Ringdown Laser Absorption Spectroscopy (IR-CRLAS) as a diagnostic tool for combustion chemistry studies. High resolution rovibrational absorption spectra have been obtained in low pressure laminar flames in the mid-infrared employing a pulsed single mode optical parametric oscillator (OPO) laser system. The high sensitivity and generality of IR-CRLAS for combustion studies is demonstrated in a variety of flames and is shown to be robust even in sooting environments with high temperature gradients. The ability to obtain spatially resolved data is also demonstrated in one dimensional laminar flame studies. These preliminary results indicate the potential of IR-CRLAS as a combustion diagnostic which is capable of obtaining absolute concentrations of reactants, intermediates, and products simultaneously within a narrow spectral region. In this demonstration, two information rich mid-infrared spectral regions (1.6 and 3-4 microns) have been probed at Doppler-limited resolution with an effective laser bandwidth of < 0.007 cm{sup -1}.

  11. A Simple Demonstration of Absorption Spectra Using Tungsten Holiday Lights

    ERIC Educational Resources Information Center

    Birriel, Jennifer J.

    2009-01-01

    In a previous paper submitted to the Demonstrations section (Birriel 2008, "Astronomy Education Review," 7, 147), I discussed using commercially available incandescent light bulbs for the purpose of demonstrating absorption spectra in the classroom or laboratory. This demonstration solved a long-standing problem that many of astronomy instructors…

  12. Absorption features in the 5-8 micron spectra of protostars

    NASA Technical Reports Server (NTRS)

    Tielens, A. G. G. M.; Allamandola, L. J.; Bregman, J.; Goebel, J.; Witteborn, F. C.; Dhendecourt, L. B.

    1984-01-01

    High signal-to-noise ratio spectra in the range of 5-8 microns of four sources embedded in molecular clouds are examined using low-temperature laboratory measurements of the 5-8-micron spectra of simple molecules and their mixtures. The absorption, apparent in all four sources, is characterized by highly distinct features ranging from two relatively narrow bands at 6.0 and 6.8 microns in W33A to a broad, shallow, and partially structured feature extending from 5.2 to 7.8 microns in Mon R2-IRS2, BN, and NGC2264. The first feature (W33A) is explained by the OH bending mode in H2O and the CH deformation modes in saturated hydrocarbons; while the second feature (Mon R2-IRS2-type) is explained by the presence of a mixture of saturated and unsaturated hydrocarbons possibly containing strongly electronegative groups.

  13. Infrared absorption spectra of human malignant tumor tissues

    NASA Astrophysics Data System (ADS)

    Skornyakov, I. V.; Tolstorozhev, G. B.; Butra, V. A.

    2008-05-01

    We used infrared spectroscopy methods to study the molecular structure of tissues from human organs removed during surgery. The IR spectra of the surgical material from breast, thyroid, and lung are compared with data from histological examination. We show that in malignant neoplasms, a change occurs in the hydrogen bonds of protein macromolecules found in the tissue of the studied organs. We identify the spectral signs of malignant pathology.

  14. Variations in the IR spectra of yellow ochre due to mixing with binding medium and drying

    NASA Astrophysics Data System (ADS)

    Balakhnina, I. A.; Brandt, N. N.; Kimberg, Ya. S.; Rebrikova, N. L.; Chikishev, A. Yu.

    2011-05-01

    ATR-FTIR spectroscopy is used to analyze the interaction of yellow ochre with a binding medium (linseed oil) and other pigments (orpiment and azurite). Spectra of four different samples of ochre are compared. Variations in the IR spectra of ochre resulting from drying it on various substrates are detected. Changes in spectra of the linseed oil upon its drying are analyzed.

  15. Comparative Analysis of IR and Vibrational Circular Dichroism Spectra for a Series of Camphor-Related Molecules

    NASA Astrophysics Data System (ADS)

    Abbate, Sergio; Burgi, Luigi Filippo; Gangemi, Fabrizio; Gangemi, Roberto; Lebon, France; Longhi, Giovanna; Pultz, Vaughan M.; Lightner, David A.

    2009-09-01

    The absorption spectra and vibrational circular dichroism (VCD) spectra in the mid-IR range 1600-950 cm-1 of 10 camphor-related compounds have been recorded and compared to DFT calculated spectra at the B3PW91/TZ2P level and have been examined together with the corresponding data of the parent molecules. The rigidity of the bridged structure common to all compounds investigated permits (a) identification of three spectroscopic regions in the mid-IR range that can be "used" separately by the interested stereochemist for structural diagnosis and assignment of some major characteristics of the VCD spectra in these regions to what we call "skeletal chiral sense" and (b) recognition of possible conformers for flexible substituent groups, when present. VCD spectra of the 10 molecules have been recorded and analyzed also in the CH-stretching region, 3100-2800 cm-1. Here, we have been able to identify and characterize features of vibrational excitons by comparison of data within the 10-molecule class. To find a theoretical justification of result (a), we have examined the potential energy distribution of the normal modes in the mid-IR range, the partitioning of the calculated rotational strengths in terms of contributions from all couples of internal coordinates, the angle formed by the two vectors, the electric dipole transition moment and the magnetic dipole transition moment, and finally the overlap of normal modes of different molecules. A discussion is provided as to the usability of the introduced algorithms.

  16. Efficient enhancement of the visible-light absorption of cyclometalated Ir(III) complexes triplet photosensitizers with Bodipy and applications in photooxidation and triplet-triplet annihilation upconversion.

    PubMed

    Sun, Jifu; Zhong, Fangfang; Yi, Xiuyu; Zhao, Jianzhang

    2013-06-01

    We report molecular designing strategies to enhance the effective visible-light absorption of cyclometalated Ir(III) complexes. Cationic cyclometalated Ir(III) complexes were prepared in which boron-dipyrromethene (Bodipy) units were attached to the 2,2'-bipyridine (bpy) ligand via -C≡C- bonds at either the meso-phenyl (Ir-2) or 2 position of the π core of Bodipy (Ir-3). For the first time the effect of π conjugating (Ir-3) or tethering (Ir-2) of a light-harvesting chromophore to the coordination center on the photophysical properties was compared in detail. Ir(ppy)2(bpy) (Ir-1; ppy = 2-phenylpyridine) was used as model complex, which gives the typical weak absorption in visible range (ε < 4790 M(-1) cm(-1) in region > 400 nm). Ir-2 and Ir-3 showed much stronger absorption in the visible range (ε = 71,400 M(-1) cm(-1) at 499 nm and 83,000 M(-1) cm(-1) at 527 nm, respectively). Room-temperature phosphorescence was only observed for Ir-1 (λ(em) = 590 nm) and Ir-3 (λ(em) = 742 nm). Ir-3 gives RT phosphorescence of the Bodipy unit. On the basis of the 77 K emission spectra, nanosecond transient absorption spectra, and spin density analysis, we proposed that Bodipy-localized long-lived triplet excited states were populated for Ir-2 (τT = 23.7 μs) and Ir-3 (87.2 μs). Ir-1 gives a much shorter triplet-state lifetime (0.35 μs). Complexes were used as singlet oxygen ((1)O2) photosensitizers in photooxidation. The (1)O2 quantum yield of Ir-3 (ΦΔ = 0.97) is ca. 2-fold of Ir-2 (ΦΔ = 0.52). Complexes were also used as triplet photosensitizer for TTA upconversion; upconversion quantum yields of 1.2% and 2.8% were observed for Ir-2 and Ir-3, respectively. Our results proved that the strong absorption of visible light of Ir-2 failed to enhance production of a triplet excited state. These results are useful for designing transition metal complexes that show effective strong visible-light absorption and long-lived triplet excited states, which can be used as ideal

  17. High-resolution IR Absorption Spectroscopy of Polycyclic Aromatic Hydrocarbons in the 3 μm Region: Role of Periphery

    NASA Astrophysics Data System (ADS)

    Maltseva, Elena; Petrignani, Annemieke; Candian, Alessandra; Mackie, Cameron J.; Huang, Xinchuan; Lee, Timothy J.; Tielens, Alexander G. G. M.; Oomens, Jos; Buma, Wybren Jan

    2016-11-01

    In this work we report on high-resolution IR absorption studies that provide a detailed view on how the peripheral structure of irregular polycyclic aromatic hydrocarbons (PAHs) affects the shape and position of their 3 μm absorption band. For this purpose, we present mass-selected, high-resolution absorption spectra of cold and isolated phenanthrene, pyrene, benz[a]antracene, chrysene, triphenylene, and perylene molecules in the 2950–3150 cm‑1 range. The experimental spectra are compared with standard harmonic calculations and anharmonic calculations using a modified version of the SPECTRO program that incorporates a Fermi resonance treatment utilizing intensity redistribution. We show that the 3 μm region is dominated by the effects of anharmonicity, resulting in many more bands than would have been expected in a purely harmonic approximation. Importantly, we find that anharmonic spectra as calculated by SPECTRO are in good agreement with the experimental spectra. Together with previously reported high-resolution spectra of linear acenes, the present spectra provide us with an extensive data set of spectra of PAHs with a varying number of aromatic rings, with geometries that range from open to highly condensed structures, and featuring CH groups in all possible edge configurations. We discuss the astrophysical implications of the comparison of these spectra on the interpretation of the appearance of the aromatic infrared 3 μm band, and on features such as the two-component emission character of this band and the 3 μm emission plateau.

  18. Absorption spectra of crystalline limestones experimentally deformed or tectonised

    NASA Astrophysics Data System (ADS)

    Cervelle, B.; ChayéD'Albissin, M.; Gouet, G.; Visocekas, R.

    1982-11-01

    Diffuse-reflectance spectra have been measured for a series of samples of Carrara marble experimentally deformed under different cylindrical stress ( P = 0, 100, 250, 500, 980 bars). The creation of point defects that results has been shown up classically by irradiation with β rays (40 krads), thus producing a typical blue coloration linked with the formation of colour centres. The diffuse-reflectance spectra, measured on powders with a microscope-spectrometer in the visible range (400-800 nm), allow the determination of the absorption spectra by means of the Kubelka-Munk function. These absorption spectra have been measured for each of the deformed samples, as well as for different fractions of a very deformed specimen subsequently heated at temperatures between 100 and 500° C for a fixed time. In the same way, tectonised crystalline limestones, of various origins, were studied without any other treatment than the irradiation with β rays. From this study the following preliminary conclusions have been drawn: (1) The absorption spectrum of an undeformed but merely irradiated specimen of crystalline limestone is practically monotonous, but in the deformed specimens a broad band of absorption appears, having a maximum at 620 nm with several shoulders, the chief of which is at 520 nm. (2) This absorption band shows the existence of colour centres, the density of which can be estimated relatively by means of the chromaticity coordinates x and y of the C.I.E. obtained from the diffuse-reflectance spectra (C.I.E. = Commission Internationale de l'Éclairage). (3) An overgrinding of calcite generates defects that have the same spectra as those produced during the experimental deformation. Consequently, in obtaining the powders of grain size 50-80 μm needed for the diffuse spectrometry, great care must be exercised. (4) For a given confining pressure, the defect density is proportional to the deformation rate. (5) One can calibrate the effect of the annealing of

  19. IR spectra of water droplets in no man's land and the location of the liquid-liquid critical point

    NASA Astrophysics Data System (ADS)

    Ni, Yicun; Skinner, J. L.

    2016-09-01

    No man's land is the region in the metastable phase diagram of water where it is very difficult to do experiments on liquid water because of homogeneous nucleation to the crystal. There are a number of estimates of the location in no man's land of the liquid-liquid critical point, if it exists. We suggest that published IR absorption experiments on water droplets in no man's land can provide information about the correct location. To this end, we calculate theoretical IR spectra for liquid water over a wide range of temperatures and pressures, using our E3B3 model, and use the results to argue that the temperature dependence of the experimental spectra is inconsistent with several of the estimated critical point locations, but consistent with others.

  20. Infrared absorption spectra of metal carbides, nitrides and sulfides

    NASA Technical Reports Server (NTRS)

    Kammori, O.; Sato, K.; Kurosawa, F.

    1981-01-01

    The infrared absorption spectra of 12 kinds of metal carbides, 11 kinds of nitrides, and 7 kinds of sulfides, a total of 30 materials, were measured and the application of the infrared spectra of these materials to analytical chemistry was discussed. The measurements were done in the frequency (wave length) range of (1400 to 400/cm (7 to 25 mu). The carbides Al4C3, B4C, the nitrides AlN, BN, Si3N4, WB, and the sulfides Al2S3, FeS2, MnS, NiS and PbS were noted to have specific absorptions in the measured region. The sensitivity of Boron nitride was especially good and could be detected at 2 to 3 micrograms in 300 mg of potassium bromide.

  1. EPR and electronic absorption spectra of copper bearing turquoise mineral

    NASA Astrophysics Data System (ADS)

    Sharma, K. B. N.; Moorthy, L. R.; Reddy, B. J.; Vedanand, S.

    1988-10-01

    Electron paramagnetic resonance and optical absorption spectra of turquoise have been studied both at room and low temperatures. It is concluded from the EPR spectra that the ground state of Cu 2+ ion in turquoise is 2A g(d x2- y2) and it is sited in an elongated rhombic octahedron (D 2π). The observed absorption bands at 14970 and 18354 cm -1 are assigned at 2A g→ 2B 1 g( dx2- y2→ xy) and 2A g→[ su2B 3g(d x 2-y 2→d yz) respectively assuming D 2π symmetry which are inconsistent with EPR studies. The three bands in the NIR region are attributed to combinations of fundamental modes of the H 2O molecule present in the sample.

  2. Calculation of vibrational and electronic excited state absorption spectra of arsenic-water complexes using density functional theory

    NASA Astrophysics Data System (ADS)

    Huang, L.; Lambrakos, S. G.; Shabaev, A.; Massa, L.

    2016-05-01

    Calculations are presented of vibrational and electronic excited-state absorption spectra for As-H2O complexes using density function theory (DFT) and time-dependent density functional theory (TD-DFT). DFT and TD-DFT can provide interpretation of absorption spectra with respect to molecular structure for excitation by electromagnetic waves at frequencies within the IR and UV-visible ranges. The absorption spectrum corresponding to excitation states of As-H2O complexes consisting of relatively small numbers of water molecules should be associated with response features that are intermediate between that of isolated molecules and that of a bulk system. DFT and TD-DFT calculated absorption spectra represent quantitative estimates that can be correlated with additional information obtained from laboratory measurements and other types of theory based calculations. The DFT software GAUSSIAN was used for the calculations of excitation states presented here.

  3. Theoretical investigations of absorption and fluorescence spectra of protonated pyrene.

    PubMed

    Chin, Chih-Hao; Lin, Sheng Hsien

    2016-05-25

    The equilibrium geometry and 75 vibrational normal-mode frequencies of the ground and first excited states of protonated pyrene isomers were calculated and characterized in the adiabatic representation by using the complete active space self-consistent field (CASSCF) method. Electronic absorption spectra of solid neon matrixes in the wavelength range 495-415 nm were determined by Maier et al. and they were analyzed using time-dependent density functional theory calculations (TDDFT). CASSCF calculations and absorption and emission spectra simulations by one-photon excitation equations were used to optimize the excited and ground state structures of protonated pyrene isomers. The absorption band was attributed to the S0 → S1 electronic transition in 1H-Py(+), and a band origin was used at 20580.96 cm(-1). The displaced harmonic oscillator approximation and Franck-Condon approximation were used to simulate the absorption spectrum of the (1) (1)A' ← X[combining tilde](1)A' transition of 1H-Py(+), and the main vibronic transitions were assigned for the first ππ* state. It shows that the vibronic structures were dominated by one of the eight active totally symmetric modes, with ν15 being the most crucial. This indicates that the electronic transition of the S1((1)A') state calculated in the adiabatic representation effectively includes a contribution from the adiabatic vibronic coupling through Franck-Condon factors perturbed by harmonic oscillators. The present method can adequately reproduce experimental absorption and fluorescence spectra of a gas phase. PMID:27181017

  4. Optical absorption spectra of palladium doped gold cluster cations

    SciTech Connect

    Kaydashev, Vladimir E.; Janssens, Ewald Lievens, Peter

    2015-01-21

    Photoabsorption spectra of gas phase Au{sub n}{sup +} and Au{sub n−1}Pd{sup +} (13 ≤ n ≤ 20) clusters were measured using mass spectrometric recording of wavelength dependent Xe messenger atom photodetachment in the 1.9–3.4 eV photon energy range. Pure cationic gold clusters consisting of 15, 17, and 20 atoms have a higher integrated optical absorption cross section than the neighboring sizes. It is shown that the total optical absorption cross section increases with size and that palladium doping strongly reduces this cross section for all investigated sizes and in particular for n = 14–17 and 20. The largest reduction of optical absorption upon Pd doping is observed for n = 15.

  5. Absorption Features in Spectra of Magnetized Neutron Stars

    SciTech Connect

    Suleimanov, V.; Hambaryan, V.; Neuhaeuser, R.; Potekhin, A. Y.; Pavlov, G. G.; Adelsberg, M. van; Werner, K.

    2011-09-21

    The X-ray spectra of some magnetized isolated neutron stars (NSs) show absorption features with equivalent widths (EWs) of 50-200 eV, whose nature is not yet well known.To explain the prominent absorption features in the soft X-ray spectra of the highly magnetized (B{approx}10{sup 14} G) X-ray dim isolated NSs (XDINSs), we theoretically investigate different NS local surface models, including naked condensed iron surfaces and partially ionized hydrogen model atmospheres, with semi-infinite and thin atmospheres above the condensed surface. We also developed a code for computing light curves and integral emergent spectra of magnetized neutron stars with various temperature and magnetic field distributions over the NS surface. We compare the general properties of the computed and observed light curves and integral spectra for XDINS RBS 1223 and conclude that the observations can be explained by a thin hydrogen atmosphere above the condensed iron surface, while the presence of a strong toroidal magnetic field component on the XDINS surface is unlikely.We suggest that the harmonically spaced absorption features in the soft X-ray spectrum of the central compact object (CCO) 1E 1207.4-5209 (hereafter 1E 1207) correspond to peaks in the energy dependence of the free-free opacity in a quantizing magnetic field, known as quantum oscillations. To explore observable properties of these quantum oscillations, we calculate models of hydrogen NS atmospheres with B{approx}10{sup 10}-10{sup 11} G(i.e., electron cyclotron energy E{sub c,e}{approx}0.1-1 keV) and T{sub eff} = 1-3 MK. Such conditions are thought to be typical for 1E 1207. We show that observable features at the electron cyclotron harmonics with EWs {approx_equal}100-200 eV can arise due to these quantum oscillations.

  6. The Infrared Spectra and Absorption Intensities of Amorphous Ices

    NASA Astrophysics Data System (ADS)

    Gerakines, Perry A.; Hudson, Reggie L.; Loeffler, Mark

    2016-06-01

    Our research group is carrying out new IR measurements of icy solids relevant to the outer solar system and to the interstellar medium, with an emphasis on amorphous and crystalline ices below ~ 120 K. Our goal is to update and add to the relatively meager literature on this subject and to provide electronic versions of state-of-the-art data, since the abundances of such molecules cannot be deduced without accurate reference spectra and IR band strengths. In the past year, we have focused on three of the simplest and most abundant components of interstellar and solar-system ices: methane (CH4), carbon dioxide (CO2), and methanol (CH3OH). Infrared spectra from ˜ 4500 to 500 cm-1 have been measured for each of these molecules in μm-thick films at temperatures from 10 to 120 K. All known amorphous and crystalline phases have been reproduced and, for some, presented for the first time. We also report measurements of the index of refraction at 670 nm and the mass densities for each ice phase. Comparisons are made to earlier work where possible. Electronic versions of our new results are available at http://science.gsfc.nasa.gov/691/cosmicice/ constants.html.

  7. The Infrared Spectra and Absorption Intensities of Amorphous Ices

    NASA Astrophysics Data System (ADS)

    Gerakines, Perry A.; Hudson, Reggie L.; Loeffler, Mark

    2016-06-01

    Our research group is carrying out new IR measurements of icy solids relevant to the outer solar system and to the interstellar medium, with an emphasis on amorphous and crystalline ices below ~ 120 K. Our goal is to update and add to the relatively meager literature on this subject and to provide electronic versions of state-of-the-art data, since the abundances of such molecules cannot be deduced without accurate reference spectra and IR band strengths. In the past year, we have focused on three of the simplest and most abundant components of interstellar and solar-system ices: methane (CH4), carbon dioxide (CO2), and methanol (CH3OH). Infrared spectra from ∼ 4500 to 500 cm-1 have been measured for each of these molecules in μm-thick films at temperatures from 10 to 120 K. All known amorphous and crystalline phases have been reproduced and, for some, presented for the first time. We also report measurements of the index of refraction at 670 nm and the mass densities for each ice phase. Comparisons are made to earlier work where possible. Electronic versions of our new results are available at http://science.gsfc.nasa.gov/691/cosmicice/ constants.html.

  8. Time-Resolved IR-Absorption Spectroscopy of Hot-Electron Dynamics in Satellite and Upper Conduction Bands in GaP

    NASA Technical Reports Server (NTRS)

    Cavicchia, M. A.; Alfano, R. R.

    1995-01-01

    The relaxation dynamics of hot electrons in the X6 and X7 satellite and upper conduction bands in GaP was directly measured by femtosecond UV-pump-IR-probe absorption spectroscopy. From a fit to the induced IR-absorption spectra the dominant scattering mechanism giving rise to the absorption at early delay times was determined to be intervalley scattering of electrons out of the X7 upper conduction-band valley. For long delay times the dominant scattering mechanism is electron-hole scattering. Electron transport dynamics of the upper conduction band of GaP has been time resolved.

  9. Quantitative Vapor-phase IR Intensities and DFT Computations to Predict Absolute IR Spectra based on Molecular Structure: I. Alkanes

    SciTech Connect

    Williams, Stephen D.; Johnson, Timothy J.; Sharpe, Steven W.; Yavelak, Veronica; Oats, R. P.; Brauer, Carolyn S.

    2013-11-13

    Recently recorded quantitative IR spectra of a variety of gas-phase alkanes are shown to have integrated intensities in both the C-H stretching and C-H bending regions that depend linearly on the molecular size, i.e. the number of C-H bonds. This result is well predicted from CH4 to C15H32 by DFT computations of IR spectra at the B3LYP/6-31+G(d,p) level of DFT theory. A simple model predicting the absolute IR band intensities of alkanes based only on structural formula is proposed: For the C-H stretching band near 2930 cm-1 this is given by (in km/mol): CH¬_str = (34±3)*CH – (41±60) where CH is number of C-H bonds in the alkane. The linearity is explained in terms of coordinated motion of methylene groups rather than the summed intensities of autonomous -CH2- units. The effect of alkyl chain length on the intensity of a C-H bending mode is explored and interpreted in terms of conformer distribution. The relative intensity contribution of a methyl mode compared to the total C-H stretch intensity is shown to be linear in the number of terminal methyl groups in the alkane, and can be used to predict quantitative spectra a priori based on structure alone.

  10. Application of a radiometric calibration method to lunar Fourier transform IR spectra by using a liquid-nitrogen-cooled high-emissivity blackbody.

    PubMed

    Schreiber, J; Blumenstock, T; Hase, F

    1997-11-01

    Since winter 1994/1995 the Moon has been used in addition to the Sun as an IR source of radiation to measure atmospheric absorption spectra with a Bruker IR Fourier transform spectrometer IFS 120M located near Kiruna, Sweden. A two-point radiometric calibration method with blackbody references was applied to lunar spectra in the long-wave detector channel to improve the accuracy of evaluation of the column amounts of different atmospheric trace gases. A new liquid-nitrogen-cooled high-emissivity blackbody without an entrance window is described that is used for this calibration method.

  11. Effects of compositional variation on absorption spectra of lunar pyroxenes

    NASA Technical Reports Server (NTRS)

    Hazen, R. M.; Bell, P. M.; Mao, H. K.

    1978-01-01

    Polarized absorption spectra of lunar pyroxenes with a range of iron, calcium, magnesium, titanium and chromium contents were measured on polished, oriented single crystals; spectral data on pure synthetic FeSiO3 were also recorded. The bands at 1 and 2 microns were found to vary significantly in position with composition within the pyroxene quadrilateral; wavelengths increased with increasing calcium and iron. In the visible region, a weak band at 640 nm correlates in intensity with Cr2O3, but not with titanium as had been previously suggested. The 505-nm ferrous iron peak is a sharp doublet in most low-calcium pyroxenes but a singlet in augites. A peak at 475 nm and an intense absorption edge below 700 nm correlated with titanium content.

  12. Optical absorption and scattering spectra of pathological stomach tissues

    NASA Astrophysics Data System (ADS)

    Giraev, K. M.; Ashurbekov, N. A.; Lakhina, M. A.

    2011-03-01

    Diffuse reflection spectra of biotissues in vivo and transmission and reflection coefficients for biotissues in vitro are measured over 300-800 nm. These data are used to determine the spectral absorption and scattering indices and the scattering anisotropy factor for stomach mucous membranes under normal and various pathological conditions (chronic atrophic and ulcerous defects, malignant neoplasms). The most importan tphysiological (hemodynamic and oxygenation levels) and structural-morphological (scatterer size and density) parameters are also determined. The results of a morphofunctional study correlate well with the optical properties and are consistent with data from a histomorphological analysis of the corresponding tissues.

  13. Observational Cosmology Using Absorption Lines in Quasar Spectra

    NASA Astrophysics Data System (ADS)

    Aghaee, A.

    2016-09-01

    Distant, highly luminous quasars are important cosmological probes for a variety of astrophysical questions: the first generation of galaxies, the star formation history and metal enrichment in the early Universe, the growth of the first super massive black holes (SMBHs), the role of feedback from quasars and SMBHs in galaxy evolution, the epoch of reionization, etc. In addition, they are used as background illuminating source that reveal any object located by chance on the line of sight. I will present our group works in these issues that can be done using absorption lines in the quasar spectra.

  14. Ultrafast optical nonlinearity, electronic absorption, vibrational spectra and solvent effect studies of ninhydrin

    NASA Astrophysics Data System (ADS)

    Sajan, D.; Devi, T. Uma; Safakath, K.; Philip, Reji; Němec, Ivan; Karabacak, M.

    2013-05-01

    FT-IR, FT-Raman and UV-Vis spectra of the nonlinear optical molecule ninhydrin have been recorded and analyzed. The equilibrium geometry, bonding features, and harmonic vibrational wavenumbers have been investigated with the help of B3LYP density functional theory method. A detailed interpretation of the vibrational spectra is carried out with the aid of normal coordinate analysis following the scaled quantum mechanical force field methodology. Solvent effects have been calculated using time-dependent density functional theory in combination with the polarized continuum model. Natural bond orbital analysis confirms the occurrence of strong intermolecular hydrogen bonding in the molecule. Employing the open-aperture z-scan technique, nonlinear optical absorption of the sample has been studied in the ultrafast and short-pulse excitation regimes, using 100 fs and 5 ns laser pulses respectively. It is found that ninhydrin exhibits optical limiting for both excitations, indicating potential photonic applications.

  15. Structure, IR and Raman spectra of phosphotrihydrazide studied by DFT

    NASA Astrophysics Data System (ADS)

    Furer, V. L.; Vandyukov, A. E.; Majoral, J. P.; Caminade, A. M.; Kovalenko, V. I.

    2016-09-01

    The FTIR and FT Raman measurements of the phosphotrihydrazide (S)P[N(Me)-NH2]3 have been performed. This compound is a zero generation dendrimer G0 with terminal amine groups. Structural optimization and normal mode analysis were obtained for G0 by the density functional theory (DFT). Optimized geometric bond length and angles obtained by DFT show good agreement with experiment. The amine terminal groups are characterized by the well-defined bands at 3321, 3238, 1614 cm- 1 in the experimental IR spectrum and by bands at 3327, 3241 cm- 1 in the Raman spectrum of G0. The experimental frequencies of asymmetric and symmetric NH2 stretching vibrations of amine group are lower than theoretical values due to intramolecular Nsbnd H ⋯ S hydrogen bond. This hydrogen bond is also responsible for higher experimental infrared intensity of these bands as compared with theoretical values. Relying on DFT calculations a complete vibrational assignment is proposed for the studied dendrimer.

  16. Structure, IR and Raman spectra of phosphotrihydrazide studied by DFT.

    PubMed

    Furer, V L; Vandyukov, A E; Majoral, J P; Caminade, A M; Kovalenko, V I

    2016-09-01

    The FTIR and FT Raman measurements of the phosphotrihydrazide (S)P[N(Me)-NH2]3 have been performed. This compound is a zero generation dendrimer G0 with terminal amine groups. Structural optimization and normal mode analysis were obtained for G0 by the density functional theory (DFT). Optimized geometric bond length and angles obtained by DFT show good agreement with experiment. The amine terminal groups are characterized by the well-defined bands at 3321, 3238, 1614cm(-1) in the experimental IR spectrum and by bands at 3327, 3241cm(-1) in the Raman spectrum of G0. The experimental frequencies of asymmetric and symmetric NH2 stretching vibrations of amine group are lower than theoretical values due to intramolecular NH⋯S hydrogen bond. This hydrogen bond is also responsible for higher experimental infrared intensity of these bands as compared with theoretical values. Relying on DFT calculations a complete vibrational assignment is proposed for the studied dendrimer. PMID:27179692

  17. Tddft Calculations of Transient IR Spectra of DNA

    NASA Astrophysics Data System (ADS)

    Richard, Ryan M.; Herbert, John M.

    2011-06-01

    Establishment of ultraviolet radiation's role in DNA mutation has led to an increasing interest in understanding the electronic excited state dynamics of DNA. It is known that upon excitation of the ground state, the DNA bases are excited to an optically bright ππ^* state that then quickly decays back to the ground state; however, further investigations have shown that there are long-lived states within the excited state manifolds, which may be able to influence the excited state dynamics. The goal of our study is to calculate, with the aid of time-dependent density functional theory, several transient infrared spectra of double stranded and single stranded DNA in both gas phase and in solution, in order to help sort out the exact role of these states in the relaxation processes of DNA by comparison to available experimental data.

  18. Analysis of the electronic, IR, and 1H NMR spectra of conjugated oligomers based on 4,4'-triphenylamine vinylene

    NASA Astrophysics Data System (ADS)

    Baryshnikov, G. V.; Minaeva, V. A.; Minaev, B. F.; Sun, V.-H.; Grigoras, M.

    2016-09-01

    Two types of conjugated oligomers based on 4,4'-triphenylamine vinylene have been synthesized and characterized by the methods of IR, UV-visible, and 1H NMR spectroscopy. The corresponding spectra have also been simulated theoretically at the density functional theory level with application of the B3LYP and BMK hybrid exchange-correlation functionals. A comparative analysis of the experimental and theoretical spectra of polymers and oligomers has revealed regularities of the manifestation of spectral signals depending on the conjugation chain length and the presence of a substituent in the triphenylamine core. It has been established, in particular, that the absolute intensity of IR bands satisfies a linear dependence with increase in the degree of polymerization; however, no frequency shift is observed at the same time. The position of the main peak in electron absorption spectra demonstrates the bathochromic shift with an increase in the oligomeric chain length due to the narrowing of the energy gap between the boundary molecular orbitals. Based on the theoretical estimation of the hydrogen atoms chemical shifts, the signals of various protons types in the strongly broadened experimental 1H NMR spectra of the bis-(4-iodine phenyl)-phenylamine and N,N-bis-(4-iodine phenyl)-4'-(phenylethynyl)-phenylamine polymerization products have also been identified.

  19. Investigations of interhydrogen bond dynamical coupling effects in the polarized IR spectra of acetanilide crystals.

    PubMed

    Flakus, Henryk T; Michta, Anna

    2010-02-01

    This Article presents the investigation results of the polarized IR spectra of the hydrogen bond in acetanilide (ACN) crystals measured in the frequency range of the proton and deuteron stretching vibration bands, nu(N-H) and nu(N-D). The basic spectral properties of the crystals were interpreted quantitatively in terms of the "strong-coupling" theory. The model of the centrosymmetric dimer of hydrogen bonds postulated by us facilitated the explanation of the well-developed, two-branch structure of the nu(N-H) and nu(N-D) bands as well as the isotopic dilution effects in the spectra. On the basis of the linear dichroic and temperature effects in the polarized IR spectra of ACN crystals, the H/D isotopic "self-organization" effects were revealed. A nonrandom distribution of hydrogen isotope atoms (H or D) in the lattice was deduced from the spectra of isotopically diluted ACN crystals. It was also determined that identical hydrogen isotope atoms occupy both hydrogen bonds in the dimeric systems, where each hydrogen bond belongs to a different chain. A more complex fine structure pattern of nu(N-H) and nu(N-D) bands in ACN spectra in comparison with the spectra of other secondary amides (e.g., N-methylacetamide) can be explained in terms of the "relaxation" theory of the IR spectra of hydrogen-bonded systems. PMID:20055492

  20. La-doping effect on spin-orbit coupled Sr2IrO4 probed by x-ray absorption spectroscopy

    NASA Astrophysics Data System (ADS)

    Cheng, Jie; Sun, Xuanyong; Liu, Shengli; Li, Bin; Wang, Haiyun; Dong, Peng; Wang, Yu; Xu, Wei

    2016-09-01

    Sr2IrO4 was predicted to be an unconventional superconductor upon carrier doping since it highly resembles the high-temperature cuprates. Here, to understand carrier doping effect on spin-orbit coupled Mott insulator Sr2IrO4, the electronic structure and local structure distortion for Sr2 - x La x IrO4 system have been investigated by x-ray absorption spectroscopy. By comparing the intensity of white-line features at the Ir L 2,3 absorption edges, we observe remarkably large branching ratios in La-doped compounds, greater than that of the parent material Sr2IrO4, suggesting a strong spin-orbit interaction for Sr2IrO4-based system. Moreover, extended x-ray absorption fine structure spectra demonstrate more regular IrO6 octahedra, i.e. the weakened crystal electric field versus La-doping. By theoretical calculations, the synergistic effect of regular IrO6 octahedra and electron doping is established, which accounts for the transition from a Mott insulator to a conductive state in Sr2 - x La x IrO4-based system.

  1. La-doping effect on spin–orbit coupled Sr2IrO4 probed by x-ray absorption spectroscopy

    NASA Astrophysics Data System (ADS)

    Cheng, Jie; Sun, Xuanyong; Liu, Shengli; Li, Bin; Wang, Haiyun; Dong, Peng; Wang, Yu; Xu, Wei

    2016-09-01

    Sr2IrO4 was predicted to be an unconventional superconductor upon carrier doping since it highly resembles the high-temperature cuprates. Here, to understand carrier doping effect on spin–orbit coupled Mott insulator Sr2IrO4, the electronic structure and local structure distortion for Sr2 ‑ x La x IrO4 system have been investigated by x-ray absorption spectroscopy. By comparing the intensity of white-line features at the Ir L 2,3 absorption edges, we observe remarkably large branching ratios in La-doped compounds, greater than that of the parent material Sr2IrO4, suggesting a strong spin-orbit interaction for Sr2IrO4-based system. Moreover, extended x-ray absorption fine structure spectra demonstrate more regular IrO6 octahedra, i.e. the weakened crystal electric field versus La-doping. By theoretical calculations, the synergistic effect of regular IrO6 octahedra and electron doping is established, which accounts for the transition from a Mott insulator to a conductive state in Sr2 ‑ x La x IrO4-based system.

  2. Theoretical studies on tautomerism and IR spectra of C-5 substituted imidazoles

    NASA Astrophysics Data System (ADS)

    Kurzepa, Mal̷gorzata; Dobrowolski, Jan Cz; Mazurek, Aleksander P.

    2001-05-01

    Total energy, Gibbs free energy, the highest π and σ electronic states, and IR spectra were calculated for twelve C-5 substituted imidazoles at the MP2/6-311++G ∗∗ level. The COOH and BH 2 groups stabilize strongly the N 1-H tautomer, the F and OH groups stabilize strongly the N 3-H tautomer, whereas the NH 2 and NO 2 groups favours the N 3-H tautomer with a similar, medium strength. The calculated IR spectra of the imidazoles studied reveal differences between the two tautomers, but they do not follow the order of derivatives emerging from the energetics.

  3. On the unusual IR spectra of the pentachlorophenol - Trimethylamine complex in low temperature matrices

    NASA Astrophysics Data System (ADS)

    Wierzejewska, Maria; Yaremko, Anatoly M.; Virko, Serdej V.; Barnes, Austin J.; Ratajczak, Henryk

    2016-09-01

    Usually the stretching vibration of the A-H group in hydrogen-bonded complexes gives an intense, broad absorption in the IR spectrum. However in a few complexes it has proved difficult to detect this absorption in low temperature matrices. In this work the Ratajczak-Yaremko vibrational model of the hydrogen bond has been applied to simulate the IR spectrum obtained for one such complex: the pentachlorophenol-trimethylamine, PCP-TMA, hydrogen bonded complex isolated in an argon matrix. Quantum chemical calculations have also been carried out to gain further insight into this complex.

  4. Study of absorption spectra of gasolines and other hydrocarbon mixtures in the second overtone region of the CH3, CH2, CH groups

    NASA Astrophysics Data System (ADS)

    Muradov, V. G.; Sannikov, D. G.

    2007-03-01

    We have obtained experimental and model absorption spectra for individual hydrocarbons (toluene, benzene, n-heptane, and iso-octane) and their mixtures in the near IR range (λ = 1080 1220 nm). We model the spectra of nonsynthetic gasolines obtained under the same conditions by combining the spectra of three pure hydrocarbons. We show that the octane number of the studied gasoline is linearly related to the toluene (or benzene) concentrations in the model mixture.

  5. Far-infrared absorption spectra of cobalt(III), rhodium(III), and iridium(III). beta. -diketonates

    SciTech Connect

    Oglezneva, I.M.; Isakova, V.G.; Igumenov, I.K.

    1987-03-01

    The IR absorption spectra of the complexes of Co(II), Rh(III), and Ir(III) with acetylacetone, trifluoroacetylacetone, hexafluoroactylacetone, dipivaloylmethane, and pivaloyltrifluoroacetylacetone in the region from 30 to 700 cm/sup -1/ have been examined for the first time. The frequencies of the intramolecular vibrations associated with in-plane and out-of-plane deformations of the chelate rings and deformations of the radicals in the ligands have been assigned. The frequencies of the predominantly stretching nu(MO) vibrations of the metal-oxygen bonds have been identified. Their variation has been compared with NMR data on the redistribution of the electron density in the chelate rings.

  6. Method of spectral subtraction of gas-phase Fourier transform infrared (FT-IR) spectra by minimizing the spectrum length.

    PubMed

    Kozlov, Denis; Besov, Alexey

    2011-08-01

    A new method of spectral subtraction for gas-phase Fourier transform infrared (FT-IR) spectra was developed for long-path gas measurements. The method is based on minimization of the length of the spectrum that results from subtracting the spectrum of an individual component of a gas mixture (water, CO(2), etc.) from the experimental spectrum of the mixture. For this purpose a subtraction coefficient (k(min)) is found for which the length of the resulting spectrum is minimized. A mathematical simulation with two Lorentzian absorption bands was conducted and the limits of application for the proposed method were determined. Two experimental examples demonstrate that a successful result could be achieved in the case when the subtrahend spectrum contains a number of narrow absorption bands (such as the spectrum of water vapor). PMID:21819781

  7. Mid-IR Spectra of HED Meteorites and Synthetic Pyroxenes: Reststrahlen Features (9-12 micron)

    NASA Technical Reports Server (NTRS)

    Lim, Lucy F.; Emery, Joshua P.; Moskovitz, Nicholas A.

    2010-01-01

    In an earlier study. Hamilton (2000) mapped the behavior of the 9-12 micron reststrahlen structures with composition in a suite of primarily natural terrestrial pyroxenes. Here we examine the same set of reststrahlen features in the spectra of diogenites and eucrites and place them in the context of the terrestrial samples and of a suite of well-characterized synthetic pyroxenes. The results will be useful to the interpretation of mid-IR spectra of 4 Vesta and other basaltic asteroids.

  8. Performance of a high-resolution mid-IR optical-parametric-oscillator transient absorption spectrometer.

    PubMed

    Echebiri, Geraldine O; Smarte, Matthew D; Walters, Wendell W; Mullin, Amy S

    2014-06-16

    We report on a mid-IR optical parametric oscillator (OPO)-based high resolution transient absorption spectrometer for state-resolved collisional energy transfer. Transient Doppler-broadened line profiles at λ = 3.3 μm are reported for HCl R7 transitions following gas-phase collisions with vibrationally excited pyrazine. The instrument noise, analyzed as a function of IR wavelength across the absorption line, is as much as 10 times smaller than in diode laser-based measurements. The reduced noise is attributed to larger intensity IR light that has greater intensity stability, which in turn leads to reduced detector noise and better frequency locking for the OPO.

  9. Absorption spectra of adenocarcinoma and squamous cell carcinoma cervical tissues

    NASA Astrophysics Data System (ADS)

    Ivashko, Pavlo; Peresunko, Olexander; Zelinska, Natalia; Alonova, Marina

    2014-08-01

    We studied a methods of assessment of a connective tissue of cervix in terms of specific volume of fibrous component and an optical density of staining of connective tissue fibers in the stroma of squamous cancer and cervix adenocarcinoma. An absorption spectra of blood plasma of the patients suffering from squamous cancer and cervix adenocarcinoma both before the surgery and in postsurgical periods were obtained. Linear dichroism measurements transmittance in polarized light at different orientations of the polarization plane relative to the direction of the dominant orientation in the structure of the sample of biotissues of stroma of squamous cancer and cervix adenocarcinoma were carried. Results of the investigation of the tumor tissues showed that the magnitude of the linear dichroism Δ is insignificant in the researched spectral range λ=280-840 nm and specific regularities in its change observed short-wave ranges.

  10. Variational Calculations of IR Ro-Vibrational Spectra for Nitric Acid

    NASA Astrophysics Data System (ADS)

    Pavlyuchko, A. I.; Yurchenko, S. N.; Tennyson, J.

    2013-09-01

    To model the atmospheric composition of the potentially habitable planets, it is essential to have comprehensive data on the spectroscopic properties of the main molecular absorbers. This is especially true in the infrared region which is dominated by transitions of polyatomic molecules [1]. Nitric acid (HNO3) is an important constituent of the Earth atmosphere where it is a prominent bio-signature. Here we present simulations of the absorption spectra for HNO3. We have developed a variational method to solve the ro-vibrational Schrödinger equation for a general polyatomic molecule. The ro-vibrational Hamiltonian is given by [2] where the internal curvilinear vibrational coordinates qi are used to represent the displacements of the bond lengths and bond angles, ?ij(q) are elements of the matrix of the kinematic coefficients, t is the determinant of this matrix, 'a are the Euler angles, and μab(q) is the inverse matrix of the tensor of inertia. The potential energy function, V (q), is given by a fourthorder polynomial expansion in terms of Morse variables xi = 1 - e-iqi for the stretching coordinates and xi = qi for the bending coordinates. The dipole moment of the molecule is presented in the form of a Taylor series of the 2nd order in terms of qi. The parameters of the potential energy and the dipole moment functions of HNO3 were calculated by the quantum chemical method at the CCSD(T)/aug-cc-pVQZ level of theory. With this potential energy function, agreement between the calculated and experimental fundamental frequencies of vibrations is within 5 cm -1. The harmonic part of the potential function was then optimized by fitting to the experimental fundamental frequencies and used to simulate the IR spectra of HNO3. The results are in good agreement with the experimental data. The figure shows an example of the simulated spectra of HNO3 in the area of the strong Fermi resonance between the -5 and 2-9 bands along with an experimental counterpart. The resulting

  11. A Parallel Iterative Method for Computing Molecular Absorption Spectra.

    PubMed

    Koval, Peter; Foerster, Dietrich; Coulaud, Olivier

    2010-09-14

    We describe a fast parallel iterative method for computing molecular absorption spectra within TDDFT linear response and using the LCAO method. We use a local basis of "dominant products" to parametrize the space of orbital products that occur in the LCAO approach. In this basis, the dynamic polarizability is computed iteratively within an appropriate Krylov subspace. The iterative procedure uses a matrix-free GMRES method to determine the (interacting) density response. The resulting code is about 1 order of magnitude faster than our previous full-matrix method. This acceleration makes the speed of our TDDFT code comparable with codes based on Casida's equation. The implementation of our method uses hybrid MPI and OpenMP parallelization in which load balancing and memory access are optimized. To validate our approach and to establish benchmarks, we compute spectra of large molecules on various types of parallel machines. The methods developed here are fairly general, and we believe they will find useful applications in molecular physics/chemistry, even for problems that are beyond TDDFT, such as organic semiconductors, particularly in photovoltaics.

  12. Substitution effects on the absorption spectra of nitrophenolate isomers.

    PubMed

    Wanko, Marius; Houmøller, Jørgen; Støchkel, Kristian; Suhr Kirketerp, Maj-Britt; Petersen, Michael Åxman; Nielsen, Mogens Brøndsted; Nielsen, Steen Brøndsted; Rubio, Angel

    2012-10-01

    Charge-transfer excitations highly depend on the electronic coupling between the donor and acceptor groups. Nitrophenolates are simple examples of charge-transfer systems where the degree of coupling differs between ortho, meta and para isomers. Here we report the absorption spectra of the isolated anions in vacuo to avoid the complications of solvent effects. Gas-phase action spectroscopy was done with two different setups, an electrostatic ion storage ring and an accelerator mass spectrometer. The results are interpreted on the basis of CC2 quantum chemical calculations. We identified absorption maxima at 393, 532, and 399 nm for the para, meta, and ortho isomer, respectively, with the charge-transfer transition into the lowest excited singlet state. In the meta isomer, this π-π* transition is strongly redshifted and its oscillator strength reduced, which is related to the pronounced charge-transfer character, as a consequence of the topology of the conjugated π-system. Each isomer's different charge distribution in the ground state leads to a very different solvent shift, which in acetonitrile is bathochromic for the para and ortho, but hypsochromic for the meta isomer.

  13. Stencil lithography of gold-black IR absorption coatings

    NASA Astrophysics Data System (ADS)

    Panjwani, Deep; Yesiltas, Mehmet; Singh, Simranjit; Barco, Enrique Del; Peale, R. E.; Hirschmugl, Carol; Sedlemair, Julia

    2014-09-01

    Gold black coatings are deposited through a stencil shadow mask to produce infrared-absorbing patterns with sub-mm lateral dimensions. Such dimensions match the characteristic pitch of Long Wave Infrared (LWIR) array bolometers. Infrared spectral imaging with sub-micron spatial resolution reveals the spatial distribution of absorption across the pattern.

  14. Plasmonic resonance absorption spectra in mid-infrared in an array of graphene nanoresonators

    NASA Astrophysics Data System (ADS)

    Abeysinghe, Don C.; Myers, Joshua; Nader Esfahani, Nima; Hendrickson, Joshua R.; Cleary, Justin W.; Walker, Dennis E.; Chen, Kuei-Hsien; Chen, Li-Chyong; Mou, Shin

    2013-12-01

    We experimentally demonstrated graphene plasmon resonant absorption in mid-IR by utilizing an array of graphene nanoribbon resonators on SiO2 substrate. By tuning resonator width we probed the graphene plasmons with λp <= λ0/100 and plasmon resonances as high as 0.240 eV (2100 cm-1) for 40 nm wide nanoresonators. Resonant absorption spectra revealed plasmon dispersion as well as plasmon damping due to the interaction of graphene plasmons with the surface polar phonons in SiO2 substrate and intrinsic graphene optical phonons. Graphene nanoribbons with varying widths enabled us to identify the damping mechanisms of graphene plasmons and much reduced damping was observed when the plasmon resonance frequencies were close to the substrate polar phonon frequencies. Then, by direct ebeam exposure of graphene nanoresonators, we effectively changed the carrier density and caused red-shift of the plasmon spectra. This work will provide insight into light-sensitive, frequency-tunable photodetectors based on graphene's plasmonic excitations.

  15. Constraining The Reionization History With QSO Absorption Spectra

    NASA Astrophysics Data System (ADS)

    Gallerani, S.; Choudhury, T. R.; Ferrara, A.

    2006-08-01

    We use a semi-analytical approach to simulate absorption spectra of QSOs at high redshifts with the aim of constraining the cosmic reionization history. We consider two physically motivated and detailed reionization histories: (i) an Early Reionization Model (ERM) in which the intergalactic medium is reionized by PopIII stars at z~14, and (ii) a more standard Late Reionization Model (LRM) in which overlapping, induced by QSOs and normal galaxies, occurs at z~6. An example of simulated spectra is provided by FIG.1. From the analysis of current Lyα forest data at z<6, we conclude that it is impossible to disentangle the two scenarios, which fit equally well the observed Gunn-Peterson optical depth, flux probability distribution function and dark gap width distribution. At z>6, however, clear differences start to emerge which are best quantified by the dark gap width distribution. We find that 35 (zero) per cent of the lines of sight within 5.750Å in the rest frame of the QSO if re-ionization is not (is) complete at z>~6 (FIG.2). Similarly, the ERM predicts peaks of width ~1Å in 40 per cent of the lines of sight in the redshift range 6.0-6.6; in the same range, LRM predicts no peaks of width >0.8Å (FIG.3). We conclude that the dark gap and peak width statistics represent superb probes of cosmic reionization if about ten QSOs can be found at z>6.

  16. An Inverse Modeling Approach to Estimating Phytoplankton Pigment Concentrations from Phytoplankton Absorption Spectra

    NASA Technical Reports Server (NTRS)

    Moisan, John R.; Moisan, Tiffany A. H.; Linkswiler, Matthew A.

    2011-01-01

    Phytoplankton absorption spectra and High-Performance Liquid Chromatography (HPLC) pigment observations from the Eastern U.S. and global observations from NASA's SeaBASS archive are used in a linear inverse calculation to extract pigment-specific absorption spectra. Using these pigment-specific absorption spectra to reconstruct the phytoplankton absorption spectra results in high correlations at all visible wavelengths (r(sup 2) from 0.83 to 0.98), and linear regressions (slopes ranging from 0.8 to 1.1). Higher correlations (r(sup 2) from 0.75 to 1.00) are obtained in the visible portion of the spectra when the total phytoplankton absorption spectra are unpackaged by multiplying the entire spectra by a factor that sets the total absorption at 675 nm to that expected from absorption spectra reconstruction using measured pigment concentrations and laboratory-derived pigment-specific absorption spectra. The derived pigment-specific absorption spectra were further used with the total phytoplankton absorption spectra in a second linear inverse calculation to estimate the various phytoplankton HPLC pigments. A comparison between the estimated and measured pigment concentrations for the 18 pigment fields showed good correlations (r(sup 2) greater than 0.5) for 7 pigments and very good correlations (r(sup 2) greater than 0.7) for chlorophyll a and fucoxanthin. Higher correlations result when the analysis is carried out at more local geographic scales. The ability to estimate phytoplankton pigments using pigment-specific absorption spectra is critical for using hyperspectral inverse models to retrieve phytoplankton pigment concentrations and other Inherent Optical Properties (IOPs) from passive remote sensing observations.

  17. IR, NIR, and UV Absorption Spectroscopy of C60(2+) and C60(3+) in Neon Matrixes.

    PubMed

    Kern, Bastian; Strelnikov, Dmitry; Weis, Patrick; Böttcher, Artur; Kappes, Manfred M

    2014-02-01

    C60(2+) and C60(3+) were produced by electron-impact ionization of sublimed C60 and charge-state-selectively codeposited onto a gold mirror substrate held at 5 K together with neon matrix gas containing a few percent of the electron scavengers CO2 or CCl4. This procedure limits charge-changing of the incident fullerene projectiles during matrix isolation. IR, NIR, and UV-vis spectra were then measured. Ten IR absorptions of C60(2+) were identified. C60(3+) was observed to absorb in the NIR region close to the known vibronic bands of C60(+). UV spectra of C60, C60(+), and C60(2+) were almost indistinguishable, consistent with a plasmon-like nature of their UV absorptions. The measurements were supported by DFT and TDDFT calculations, revealing that C60(2+) has a singlet D5d ground state whereas C60(3+) forms a doublet of Ci symmetry. The new results may be of interest regarding the presence of C60(2+) and C60(3+) in space.

  18. Infrared absorption spectra of various doping states in cuprate superconductors

    SciTech Connect

    Yonemitsu, K.; Bishop, A.R.; Lorenzana, J.

    1992-02-01

    Doping states in a two-dimensional three-band extended Peierls-Hubbard model was investigated within inhomogeneous Hartree-Fock and random phase approximation. They are very sensitive to small changes of interaction parameters and their distinct vibrational and optical absorption spectra can be used to identify different doping states. For electronic parameters relevant to cuprate superconductors, as intersite electron-phonon interaction strength increases, the doping state changes from a Zhang-Rice state to a covalent molecular singlet state accompanied by local quenching of the Cu magnetic moment and large local lattice distortion in an otherwise undistorted antiferromagnetic background. In a region where both intersite electron-phonon interaction and on-site electron-electron repulsion are large, we obtain new stable global phases including a bond-order-wave state and a mixed state of spin-Peierls bonds and antiferromagnetic Cu spins, as well as many metastable states. Doping in the bond-order-wave region induces separation of spin and charge. 9 refs.

  19. Infrared absorption spectra of various doping states in cuprate superconductors

    SciTech Connect

    Yonemitsu, K.; Bishop, A.R. ); Lorenzana, J. )

    1992-01-01

    Doping states in a two-dimensional three-band extended Peierls-Hubbard model was investigated within inhomogeneous Hartree-Fock and random phase approximation. They are very sensitive to small changes of interaction parameters and their distinct vibrational and optical absorption spectra can be used to identify different doping states. For electronic parameters relevant to cuprate superconductors, as intersite electron-phonon interaction strength increases, the doping state changes from a Zhang-Rice state to a covalent molecular singlet state accompanied by local quenching of the Cu magnetic moment and large local lattice distortion in an otherwise undistorted antiferromagnetic background. In a region where both intersite electron-phonon interaction and on-site electron-electron repulsion are large, we obtain new stable global phases including a bond-order-wave state and a mixed state of spin-Peierls bonds and antiferromagnetic Cu spins, as well as many metastable states. Doping in the bond-order-wave region induces separation of spin and charge. 9 refs.

  20. Molecular structures and absorption spectra assignment of corrole NH tautomers.

    PubMed

    Beenken, Wichard; Presselt, Martin; Ngo, Thien H; Dehaen, Wim; Maes, Wouter; Kruk, Mikalai

    2014-02-01

    The individual absorption spectra of the two NH tautomers of 10-(4,6-dichloropyrimidin-5-yl)-5,15-dimesitylcorrole are assigned on the basis of the Gouterman four-orbital model and a quantum chemical TD-DFT study. The assignment indicates that the red-shifted T1 tautomer is the one with protonated pyrrole nitrogen atoms N(21), N(22) and N(23), whereas the blue-shifted T2 tautomer has pyrrole nitrogen atoms N(21), N(22) and N(24) protonated. A wave-like nonplanar distortion of the macrocycle in the ground state is found for both NH tautomers, with the wave axis going through the pyrroles containing N(22) and N(24). The 7C plane determined by the least-squares distances to the carbon atoms C1, C4, C5, C6, C9, C16, and C19 is suggested as a mean corrole macrocycle plane for the analysis of out-of-plane distortions. The magnitude of these distortions is distinctly different for the two NH tautomers, leading to substantial perturbations of their acid-base properties, which are rationalized by the interplay of the degree of out-of-plane distortion of the macrocycle as a whole and the tendency of the pyrrole nitrogen atoms toward pyramidalization, with the former leading to a basicity increase whereas the latter enhances the acidity.

  1. UV optical absorption spectra analysis of spodumene crystals from Brazil

    NASA Astrophysics Data System (ADS)

    Isotani, Sadao; Watari, Kazunori; Mizukami, Akiyoshi; Bonventi, Waldemar; Ito, Amando Siuiti

    2007-04-01

    The spectral decomposition analysis was applied to the optical absorption spectra of spodumene crystals from the Brazilian eastern pegmatitic province. The analyzed samples were natural, treated at 400 °C for 24 h and those irradiated with γ rays of 60Co with doses up to 5 MGy. The attributions of the lines were made taking in account highly accurate quantum mechanical calculations. The heated sample had only three lines, which were not affected by irradiation. One of them at 7.58 eV was attributed to an oxygen vacancy defect and the other two at 5.07 and 4.64 eV to a peroxy-type defect. The analysis of the growth of the lines with the irradiation showed that they belong to two groups of defects. The first group of lines at 4.2, 5.3 and 5.9 eV was attributed to a silanone-type defect. The other group of lines at 1.36, 2.0, 2.6, 3.6 and 5.0 eV was attributed to a type of Mn 3+ defect. The natural and irradiated samples also showed a line at 2.3 eV, which was attributed to another type of diamagnetic Mn 3+ defect.

  2. Effects of dynamical couplings in IR spectra of the hydrogen bond in N-phenylacrylamide crystals.

    PubMed

    Flakus, Henryk T; Michta, Anna; Nowak, Maria; Kusz, Joachim

    2011-05-01

    This article presents the investigation results of the polarized IR spectra of the hydrogen bond in N-phenylacrylamide crystals measured in the frequency range of the proton and deuteron, ν(N-H) and ν(N-D), stretching vibration bands. The basic spectral properties of the crystals were interpreted quantitatively in terms of the "strong-coupling" theory. The proposed model of the centrosymmetric dimer of hydrogen bonds facilitated the explanation of the well-developed, two-branch structure of the ν(N-H) and ν(N-D) bands as well as the isotopic dilution effects in the spectra. The vibronic mechanism of the generation of the long-wave branch of the ν(N-H) band ascribed to the excitation of the totally symmetric proton vibration was elucidated. The complex fine structure pattern of ν(N-H) and ν(N-D) bands in N-phenylacrylamide spectra in comparison with the spectra of other secondary amide crystals (e.g., N-methylacetamide and acetanilide) can be accounted for in terms of the vibronic model for the forbidden transition breaking in the dimers. On the basis of the linear dichroic and temperature effects in the polarized IR spectra of N-phenylacrylamide crystals, the H/D isotopic "self-organization" effects were revealed. PMID:21469720

  3. New High-Resolution Absorption Cross-Section Measurements of HCFC-142B in the Mid-Ir

    NASA Astrophysics Data System (ADS)

    Le Bris, Karine; Strong, Kimberly; Melo, Stella

    2009-06-01

    HCFC-142b (1-chloro-1,1-difluoroethane) is a temporary substitute for ozone-depleting chlorofluorocarbons (CFCs). However, due to its high absorption cross-sections in the mid-IR, HCFC-142b is also a highly potent greenhouse gas, now detectable from space by satellite missions. So far, the accuracy of the retrieval has been limited by the lack of reference data in a range of temperatures compatible with atmospheric observations. We present new absorption cross section measurements of HCFC-142b at high-resolution (0.02 cm^{-1}) from 223 K to 283 K in the 600 cm^{-1}- 4000 cm^{-1} spectral window. The composite spectra are calculated for each temperature from a set of acquisitions at different pressures by Fourier transform spectroscopy.

  4. Signs of the Biological Effect of ~2 μm Low-Intensity Laser Radiation in Raman and Absorption Spectra of Blood

    NASA Astrophysics Data System (ADS)

    Batay, L. E.; Khodasevich, I. A.; Khodasevich, M. A.; Gorbunova, N. B.; Manina, E. Yu.

    2016-09-01

    Local exposure of experimental animals to low-intensity emission from a thulium laser (λ = 1.96 μm) leads to changes in the Raman and IR absorption spectra of blood. This indicates development of systemic effects caused by direct excitation of water molecules by radiation with wavelength ~2 μm, in particular modifi cation of the hemoglobin molecule.

  5. Theoretical analysis of the effect of intermolecular interaction on ir spectra of skatole

    NASA Astrophysics Data System (ADS)

    Ten, G. N.; Yakovleva, A. A.; Berezin, V. I.; Baranov, V. I.

    2012-05-01

    The molecular structure and IR vibrational spectra of skatole in the isolated state, in aqueous solution, and in hexane have been calculated in the B3LYP/6-311++G(d,p) approximation. Characteristic spectral differences associated with the influence of both polar and nonpolar solvents and a hydrogen bond have been defined for the vibrational spectrum of skatole. Calculation of the isolated skatole molecule in the anharmonic approximation enabled the interpretation of the vibrational spectrum to be refined.

  6. Analysis of FT-IR spectra of dicyclopentadienyl (bis-substituted cyclopentadienyl) dithiocyano of titanium, zirconium and hafnium.

    PubMed

    Zhang, Jianbo; Ye, Peng; Zong, Yueru; Xu, Zhenhua; Chen, Shoushan

    2007-07-01

    The FT-IR spectra of 18 (R-Cp)2M(NCS)2 were measured. The M-Cp, M-NCS (M=Ti, Zr, Hf) and other vibration modes were reasonably assigned. All complexes of (R-Cp)2M(NCS)2 determined in this paper are bonded by N-M, and the absorption of upsilon(s)(M-Cp)(A1) (M=Ti, Zr and Hf) vibration all appear in 365 cm(-1) or so, while upsilon(as)(M-Cp)(B) appear successively around 420, 350 and 320 cm(-1) in order of Ti, Zr and Hf. The influence of the center metal atoms and the substituents on cyclopentadienyl upon the spectra was discussed. It is mainly in far infrared region that center metal atoms influence upon the infrared spectra. The influence of the substituents to cyclopentadienyling upon its vibration is not significant. Only between 1500 and 1480 cm(-1) did a new absorbing peak appear due to the introduction of substituents to activate upsilon(CC) vibration.

  7. Constraining the reionization history with QSO absorption spectra

    NASA Astrophysics Data System (ADS)

    Gallerani, S.; Choudhury, T. Roy; Ferrara, A.

    2006-08-01

    We use a semi-analytical approach to simulate absorption spectra of QSOs at high redshifts with the aim of constraining the cosmic reionization history. We consider two physically motivated and detailed reionization histories: (i) an early reionization model (ERM) in which the intergalactic medium is reionized by Pop III stars at z ~ 14, and (ii) a more standard late reionization model (LRM) in which overlapping, induced by QSOs and normal galaxies, occurs at z ~ 6. From the analysis of current Lyα forest data at z < 6, we conclude that it is impossible to disentangle the two scenarios, which fit equally well the observed Gunn-Peterson optical depth, flux probability distribution function and dark gap width distribution. At z > 6, however, clear differences start to emerge which are best quantified by the dark gap and peak width distributions. We find that 35 (0) per cent of the lines of sight (LOS) within 5.7 < z < 6.3 show dark gaps of widths >50Å in the rest frame of the QSO if reionization is not (is) complete at z >~ 6. Similarly, the ERM predicts peaks of width ~1Å in 40 per cent of the LOS in the redshift range 6.0-6.6 in the same range, LRM predicts no peaks of width >0.8Å. We conclude that the dark gap and peak width statistics represent superb probes of cosmic reionization if about ten QSOs can be found at z > 6. We finally discuss strengths and limitations of our method.

  8. [Decomposition of hemoglobin UV absorption spectrum into absorption spectra of prosthetic group and apoprotein by means of an additive model].

    PubMed

    Lavrinenko, I A; Vashanov, G A; Artyukhov, V G

    2015-01-01

    The decomposition pathways of hemoglobin UV absorption spectrum into the absorption spectra of the protein and non-protein components are proposed and substantiated by means of an additive model. We have established that the heme component has an absorption band with a maximum at λ(max) = 269.2 nm (ε = 97163) and the apoprotein component has an absorption band with a maximum at λ(max) = 278.4 nm (ε = 48669) for the wavelength range from 240.0 to 320.0 nm. An integral relative proportion of absorption for the heme fraction (78.8%) and apoprotein (21.2%) in the investigating wavelength range is defined.

  9. FT-IR, FT-Raman spectra, density functional computations of the vibrational spectra and molecular geometry of butylated hydroxy toluene.

    PubMed

    Babu, P Chinna; Sundaraganesan, N; Dereli, Ö; Türkkan, E

    2011-08-01

    The FT-IR spectrum of 2,6-di-tert-butyl-4-methylphenol [butylated hydroxy toluene] was recorded in the region 4000-400 cm(-1). The FT-Raman spectrum of butylated hydroxy toluene was also recorded in the region 3500-50 cm(-1). The molecular structure and vibrational frequencies of butylated hydroxy toluene (BHT) have been investigated with combined experimental and theoretical study. Two stable conformers of the title compound were obtained from the result of geometry optimizations of these possible conformers. The conformer 1 is (approximately 2.6 kcal/mol) more stable than conformer 2. Geometry optimizations and vibrational frequency calculations were performed by BLYP and B3LYP methods using 6-31G(d), 6-31G(d,p) and 6-31+G(d,p) as basis sets. The scaled frequencies were compared with experimental spectrum and on the basis of this comparison; assignments of fundamental vibrational modes were examined. Comparison of the experimental spectra with harmonic vibrational wavenumbers indicates that B3LYP/6-31G(d) results are more accurate. Predicted electronic absorption spectra of BHT from TD-DFT calculation have been analyzed and compared with the experimental UV-vis spectrum. The calculated HOMO and LUMO energies show that the charge transfer occurs within the molecule.

  10. Study of polarized IR spectra of the hydrogen bond system in crystals of styrylacetic acid

    NASA Astrophysics Data System (ADS)

    Flakus, Henryk T.; Jabłońska, Magdalena; Jones, Peter G.

    2006-10-01

    We have investigated the polarized IR spectra of the hydrogen bond system in crystals of trans-styrylacetic acid C 6H 5sbnd CH dbnd CH sbnd CH 2sbnd COOH, and also in crystals of the following three deuterium isotopomers of the compound: C 6H 5sbnd CH dbnd CH sbnd CH 2sbnd COOD, C 6H 5sbnd CH dbnd CH sbnd CD 2sbnd COOH and C 6H 5sbnd CH dbnd CH sbnd CD 2sbnd COOD. The spectra were measured at room temperature and at 77 K by a transmission method. The spectral studies were preceded by determination of the X-ray crystal structure. Theoretical analysis of the results concerned linear dichroic effects, the H/D isotopic and temperature effects, observed in the solid-state IR spectra of the hydrogen and of the deuterium bond, at the frequency ranges of the νO sbnd H and the νO sbnd D bands, respectively. Basic spectral properties of the crystals can be interpreted satisfactorily in terms of the " strong-coupling" theory, when based on a hydrogen bond dimer model. This model sufficiently explained not only a two-branch structure of the νO sbnd H and the νO sbnd D bands, and temperature-induced evolution of the crystalline spectra, but also the linear dichroic effects observed in the band frequency ranges. A vibronic mechanism was analyzed, responsible for promotion of the symmetry-forbidden transition in the IR for the totally symmetric proton stretching vibrations in centrosymmetric hydrogen bond dimers. It was found to be of minor importance, when compared with analogous spectral properties of arylcarboxylic acid, or of cinnamic acid crystals. These effects were ascribed to a substantial weakening of electronic couplings between the hydrogen bonds of the associated carboxyl groups and the styryl radicals, associated with the separation of these groups in styrylacetic acid molecules by methylene groups in the molecules.

  11. Theoretical Near-IR Spectra for Surface Abundance Studies of Massive Stars

    NASA Technical Reports Server (NTRS)

    Sonneborn, George; Bouret, J.

    2011-01-01

    We present initial results of a study of abundance and mass loss properties of O-type stars based on theoretical near-IR spectra computed with state-of-the-art stellar atmosphere models. The James Webb Space Telescope (JWST) will be a powerful tool to obtain high signal-to-noise ratio near-IR (1-5 micron) spectra of massive stars in different environments of local galaxies. Our goal is to analyze model near-IR spectra corresponding to those expected from NIRspec on JWST in order to map the wind properties and surface composition across the parameter range of 0 stars and to determine projected rotational velocities. As a massive star evolves, internal coupling, related mixing, and mass loss impact its intrinsic rotation rate. These three parameters form an intricate loop, where enhanced rotation leads to more mixing which in turn changes the mass loss rate, the latter thus affecting the rotation rate. Since the effects of rotation are expected to be much more pronounced at low metallicity, we pay special attention to models for massive stars in the the Small Magellanic Cloud. This galaxy provides a unique opportunity to probe stellar evolution, and the feedback of massive stars on galactic evol.ution in conditions similar to the epoch of maximal star formation. Plain-Language Abstract: We present initial results of a study of abundance and mass loss properties of massive stars based on theoretical near-infrared (1-5 micron) spectra computed with state-of-the-art stellar atmosphere models. This study is to prepare for observations by the James Webb Space Telescope.

  12. Change in the absorption spectra of blood exposed to a low-frequency magnetic field

    NASA Astrophysics Data System (ADS)

    Zalesskaya, G. A.; Mit'kovskaya, N. P.; Galai, O. A.; Kuchinskii, A. V.; Laskina, O. V.

    2007-03-01

    We have used the absorption spectra of whole blood in the UV-visible and IR regions of the spectrum to study changes in the structure of the molecular components of blood when exposed to a low-frequency pulsed magnetic field used to treat ischemic heart disease. We show that pronounced changes in the spectra when the blood is directly exposed in vivo to a magnetic field may be due to breaking of the bond between the heme group and the protein of the hemoglobin, as a consequence of changes in the intermolecular interactions in the polypeptide chains of the hemoglobin and also the spin states of the paramagnetic heme components. Exposure to a magnetic field results in changes in the conformations of the polypeptide chains of hemoglobin and the rate of dissociation of oxyhemoglobin. The structural changes in the hemoglobin molecule are considered as one of the possible primary mechanisms of action on blood in vivo for a low-frequency pulsed magnetic field.

  13. FT-IR and FT-Raman spectra, normal coordinate analysis and ab initio computations of Trimesic acid.

    PubMed

    Mahalakshmi, G; Balachandran, V

    2014-04-24

    The FT-IR and FT-Raman spectra have been recorded of Trimesic acid (1,3,5-benzenetricarboxylic acid, H3BTC). The molecular structure, conformational stability, geometry optimization, vibrational frequencies have been investigated. The total energy calculations of H3BTC were tried for various possible conformers. The spectra were interpreted with the aid of normal coordinate analysis based on ab initio Hartree-Fock (HF) and density functional theory (DFT/B3LYP) methods and 6-31+G(d,p) basis set level and was scaled using scale factors yielding good agreement between observed and calculated frequencies. Vibrational assignments and Natural bonding orbital (NBO) calculations are performed on the stable monomer of H3BTC using the same level of theory. Intramolecular hydrogen bond exists via COOH group gives the evidence for the formation of dimer entities in the title molecule. UV-VIS spectral analyses of H3BTC have been researched by theoretical calculations. In order to understand electronic transitions of the compound, TD-DFT calculations on electronic absorption spectra in gas phase and solvent (DMSO and Chloroform) were performed. The calculated frontier orbital energies, absorption wavelengths (λ), oscillator strengths (ƒ) and excitation energies (E) for gas phase and solvent (DMSO and Chloroform) are also illustrated. The statistical thermodynamic functions were obtained for the range of temperature 100-1000 K. Reliable vibrational modes associated with H3BTC are made on the basis of total energy distribution (TED) results obtained from scaled quantum mechanical (SQM) method. PMID:24508892

  14. SIZE AND TEMPERATURE DEPENDENCE IN THE FAR-IR SPECTRA OF WATER ICE PARTICLES

    SciTech Connect

    Medcraft, Chris; McNaughton, Don; Thompson, Chris D.; Appadoo, Dominique; Bauerecker, Sigurd; Robertson, Evan G.

    2012-10-10

    Spectra of water-ice aerosol particles have been measured in the far-IR region using synchrotron radiation. The particles in the nanoscale size regime of 1-100 nm were formed by rapid collisional cooling at temperatures ranging from 4 to 190 K. The spectra show the characteristic bands centered near 44 {mu}m (230 cm{sup -1}) and 62 {mu}m (160 cm{sup -1}) associated with the intermolecular lattice modes of crystalline ice at all temperatures, in contrast to previous studies of thin films formed by vapor deposition where amorphous ice is generated below 140 K. The bands shift to higher wavenumber values as the temperature is reduced, consistent with the trend seen in earlier studies, but in our experiments the actual peak positions in the aerosol particle spectra are consistently higher by ca. 4 cm{sup -1}. This finding has implications for the potential use of these spectral features as a temperature probe. The particle sizes are small enough for their spectra to be free of scattering effects, and therefore provide a means to assess imaginary refractive index values obtained through Kramers-Kronig analyses of thin film spectra.

  15. Mind the Gap: Filling the Holes in IR Spectra of Type Ia Supernovae

    NASA Astrophysics Data System (ADS)

    Garnavich, Peter

    2013-10-01

    Type Ia supernovae are essential tools for cosmology, but to tightly constrain dark energy properties their systematic uncertainties must be controlled. The near-IR appears to be an excellent spectral region for supernova studies because at these wavelengths Type Ia explosions are essentially standard candles and dust extinction is low. One difficulty is that the Earth's atmosphere blocks sections of the 1 to 2 micron spectra range so parts of the spectrum are not well-observed in nearby events while they are included in the photometric measurements at higher redshifts. This creates an uncertainty in IR "k-corrections" for cosmologically interesting supernovae. We propose to fill in these gaps by observing two nearby Type Ia with SOFIA as targets of opportunity.

  16. Spectra from the IRS of Bright Oxygen-Rich Evolved Stars in the SMC

    NASA Astrophysics Data System (ADS)

    Kraemer, Kathleen E.; Sloan, Greg; Wood, Peter

    2016-06-01

    We have used Spitzer's Infrared Spectrograph (IRS) to obtain spectra of stars in the Small Magellanic Cloud (SMC). The targets were chosen from the Point Source Catalog of the Mid-Course Space Experiment (MSX), which detected the 243 brightest infrared sources in the SMC. Our SMC sample of oxygen-rich evolved stars shows more dust than found in previous samples, and the dust tends to be dominated by silicates, with little contribution from alumina. Both results may arise from the selection bias in the MSX sample and our sample toward more massive stars. Additionally, several sources show peculiar spectral features such as PAHs, crystalline silicates, or both carbon-rich and silicate features. The spectrum of one source, MSX SMC 145, is a combination of an ordinary AGB star and a background galaxy at z~0.16, rather than an OH/IR star as previously suggested.

  17. Using Classical Dispersion Analysis to Extract Peak Parameters, Optical Constants from IR Lab Absorbance Spectra: Olivine

    NASA Astrophysics Data System (ADS)

    Pitman, Karly M.; Dijkstra, C. R.; Hofmeister, A. M.; Speck, A. K.

    2009-05-01

    Laboratory measurements quantifying the effect of Fe substituting for Mg in olivine are needed to distinguish compositional from temperature effects in observational data. Because most olivine samples are too small to acquire reflectivity data used to obtain the optical functions n(λ) and k(λ) needed for radiative transfer models, we apply the principle that classical dispersion theory may be used to determine peak positions, widths, strengths, and n and k estimates from absorption spectra of thin film samples. We study room temperature absorption spectra of a large suite of olivines evenly spaced across Mg and Fe compositions, and isotropic and anisotropic minerals with varying hardness and numbers of spectral bands. For olivine, adding accounting for asymmetric peak shapes does not substantially alter estimates of peak position but increases the error on FWHM and oscillator strengths. Values from classical dispersion fits match published n and k derived from reflectivity (better agreement in k) when the dust proxy is soft and the thickness of the sample is independently constrained. Electronic data and peak parameter trends for the laboratory olivine absorption spectra and the viability of the extracted n and k are discussed with regard to astronomy.

  18. Simultaneous infrared and UV-visible absorption spectra of matrix-isolated carbon vapor

    NASA Technical Reports Server (NTRS)

    Kurtz, Joe; Huffman, Donald R.

    1989-01-01

    Carbon molecules were suggested as possible carriers of the diffuse interstellar bands. In particular, it was proposed that the 443 nm diffuse interstellar band is due to the same molecule which gives rise to the 447 nm absorption feature in argon matrix-isolated carbon vapor. If so, then an associated C-C stretching mode should be seen in the IR. By doing spectroscopy in both the IR and UV-visible regions on the same sample, the present work provides evidence for correlating UV-visible absorption features with those found in the IR. Early data indicates no correlation between the strongest IR feature (1997/cm) and the 447 nm band. Correlation with weaker IR features is being investigated.

  19. [Analysis of FT-IR-ATR spectra of serum proteins adsorbed on carbonaceous materials].

    PubMed

    Li, Bogang; Na, Juanjuan; Yin, Jie; Yin, Guangfu

    2006-10-01

    To clarify the reason causing difference of serum proteins adsorbability on different carbonaceous materials, FT-IR-ATR spectra of human serum albumin (HSA) and human serum fibrinogen(HFG) before and after adsorbing on diamond like carbon film (DLC),diamond film (DF) and graphite were analyzed. It has been shown that there are hydrogen bond because of -NH at the interfaces of HSA-DLC, HFG-DF and HFG-graphite. Based on the results, earlier research conclusion that the adsorbability of HSA on DLC higher than that on DF and graphite, but on DF and graphite the adsorption of HFG takes precedence can be explained rationally.

  20. Formation of cluster systems in condensed matters and IR spectra of liquids

    NASA Astrophysics Data System (ADS)

    Melnikov, G.; Ignatenko, N.; Krasnych, P.; Melnikov, V.; Cherkasov, E.

    2016-02-01

    Modern approaches to the interpretation of IR spectra of polyatomic liquids are based on cluster models of the structure of matter. First of all it concerns the far infrared region of the spectrum (20-300 cm-1) where rotationally libration motions in the structure of clusters are found. This work is a continuation of research conducted by the authors earlier [G. Melnikov at al. 2015 IOP Conf. Ser Mater. Sci. Eng. 81 p 012032]. The authors have adopted a model in which the appearance of spectral bands is explained by to libration oscillations vibrations of dimers with different configurations in the structure of clusters.

  1. IR and polarized Raman spectra of (NH 3) 2(CH 2) 2HPO 4

    NASA Astrophysics Data System (ADS)

    Philip, Daizy; Aruldhas, G.

    1989-11-01

    The IR and polarized Raman spectra of (NH 3) 2(CH 2) 2HPO 4 have been recorded and analyzed. In the crystal, symmetry of the HPO 4 ion is found to be reduced from C3 v to C1. The observed splittings indicate that the site symmetry and the correlation field effects are appreciable in the crystal. Strong vibrational coupling between the PO(H) stretching and POH out-of-plane bending modes is observed. Ethylene diammonium groups are crystallographically different in the unit cell.

  2. FT-IR and FT-Raman spectra of cimetidine and its metallocomplexes

    NASA Astrophysics Data System (ADS)

    Barańska, M.; Proniewicz, L. M.

    1999-11-01

    We present vibrational spectra of three stable, well-reproducible, polymorphic forms of cimetidine ( cim), a drug which is a powerful histamine H 2-receptor antagonist used in the treatment of peptic ulcer and the Zollinger-Ellison syndrome. Assignments of Raman and IR bands are made using semiempirical methods: MNDO, AM1 and PM3. We also describe the synthesis of Me( cim) 2(ClO 4) 2, where Me=Cu(II), Cd(II), Co(II) and Ni(II), and present their vibrational data. We show that the obtained complexes are isostructural, however a metal ion that occupies a center of octahedral unit introduces some distortions that can be seen in the spectra. We also make tentative assignment of metal-ligand stretching modes observed in low frequency range.

  3. Interpretation of NO2 absorption in twilight sky spectra

    NASA Astrophysics Data System (ADS)

    McMahon, B. B.

    1984-07-01

    A multiple scattering model has been developed to calculate nitrogen dioxide (NO2) absorption in the light from the zenith sky during twilight. Model studies show that this absorption is not very sensitive to the atmospheric temperature profile or to tropospheric NO2. The model was used to interpret some ground-based measurements of NO2 sky absorption. Values for the total stratospheric column amount vary from 2 to 12 x 10 to the 15th molec/sq cm, and the mean altitude of the stratospheric concentration profile is around 35 km. These observations are in broad agreement with those of other workers.

  4. Absorption spectra of graphene nanoribbons in a composite magnetic field

    NASA Astrophysics Data System (ADS)

    Li, T. S.; Wu, M. F.; Hsieh, C. T.

    2015-10-01

    The low-frequency optical absorption properties of graphene nanoribbons in a composite magnetic field are investigated by using the gradient approximation. The spectral function exhibits symmetric delta-function like prominent peaks structure in a uniform magnetic field, and changes to asymmetric square-root divergent peaks structure when subjecting to a composite field. These asymmetric divergent peaks can be further classified into principal and secondary peaks. The spectral intensity and frequency of the absorption peaks depend sensitively on the strength and modulation period of the composite field. The transition channels of the absorption peaks are also analyzed. There exists an optical selection rule which is caused by the orthogonal properties of the sublattice wave functions. The evolution of the spectral frequency of the absorption peaks with the field strength is explored.

  5. GFIT2: an experimental algorithm for vertical profile retrieval from near-IR spectra

    NASA Astrophysics Data System (ADS)

    Connor, Brian J.; Sherlock, Vanessa; Toon, Geoff; Wunch, Debra; Wennberg, Paul O.

    2016-08-01

    An algorithm for retrieval of vertical profiles from ground-based spectra in the near IR is described and tested. Known as GFIT2, the algorithm is primarily intended for CO2, and is used exclusively for CO2 in this paper. Retrieval of CO2 vertical profiles from ground-based spectra is theoretically possible, would be very beneficial for carbon cycle studies and the validation of satellite measurements, and has been the focus of much research in recent years. GFIT2 is tested by application both to synthetic spectra and to measurements at two Total Carbon Column Observing Network (TCCON) sites. We demonstrate that there are approximately 3° of freedom for the CO2 profile, and the algorithm performs as expected on synthetic spectra. We show that the accuracy of retrievals of CO2 from measurements in the 1.61μ (6220 cm-1) spectral band is limited by small uncertainties in calculation of the atmospheric spectrum. We investigate several techniques to minimize the effect of these uncertainties in calculation of the spectrum. These techniques are somewhat effective but to date have not been demonstrated to produce CO2 profile retrievals with sufficient precision for applications to carbon dynamics. We finish by discussing ongoing research which may allow CO2 profile retrievals with sufficient accuracy to significantly improve the scientific value of the measurements from that achieved with column retrievals.

  6. FT-IR, FT-Raman spectra and DFT calculations of melaminium perchlorate monohydrate

    NASA Astrophysics Data System (ADS)

    Kanagathara, N.; Marchewka, M. K.; Drozd, M.; Renganathan, N. G.; Gunasekaran, S.; Anbalagan, G.

    2013-08-01

    Melaminium perchlorate monohydrate (MPM), an organic material has been synthesized by slow solvent evaporation method at room temperature. Powder X-ray diffraction analysis confirms that MPM crystal belongs to triclinic system with space group P-1. FTIR and FT Raman spectra are recorded at room temperature. Functional group assignment has been made for the melaminium cations and perchlorate anions. Vibrational spectra have also been discussed on the basis of quantum chemical density functional theory (DFT) calculations using Firefly (PC GAMESS) version 7.1 G. Vibrational frequencies are calculated and scaled values are compared with experimental values. The assignment of the bands has been made on the basis of the calculated PED. The Mulliken charges, HOMO-LUMO orbital energies are analyzed directly from Firefly program log files and graphically illustrated. HOMO-LUMO energy gap and other related molecular properties are also calculated. The theoretically constructed FT-IR and FT-Raman spectra of MPM coincide with the experimental one. The chemical structure of the compound has been established by 1H and 13C NMR spectra. No detectable signal was observed during powder test for second harmonic generation.

  7. Assignment of benzodiazepine UV absorption spectra by the use of photoelectron spectroscopy

    NASA Astrophysics Data System (ADS)

    Khvostenko, O. G.; Tzeplin, E. E.; Lomakin, G. S.

    2002-04-01

    Correlations between singlet transition energies and energy gaps of corresponding pairs of occupied and unoccupied molecular orbitals were revealed in a series of benzodiazepines. The occupied orbital energies were taken from the photoelectron spectra of the compound investigated, the unoccupied ones were obtained from MNDO/d calculations, and the singlet energies were taken from the UV absorption spectra. The correspondence of the singlet transitions to certain molecular orbitals was established using MNDO/d calculations and comparing between UV and photoelectron spectra. It has been concluded that photoelectron spectroscopy can be applied for interpretation of UV absorption spectra of various compounds on the basis of similar correlations.

  8. Effects of lowly ionized ions on silicon K-shell absorption spectra

    NASA Astrophysics Data System (ADS)

    Wei, H. G.; Shi, J. R.; Liang, G. Y.; Wang, F. L.; Zhong, J. Y.; Zhao, G.

    2016-05-01

    Context. In both astrophysical and laboratory plasmas, K-shell absorption spectra have become powerful diagnostic tools to investigate electron density and temperature. These spectra are also widely used to verify the opacity codes in laboratory settings. Aims: We report the effects of the low ionization silicon ions, namely from Si I to Si V, which have rarely been considered in previous models, on the K-shell silicon absorption spectra. Methods: The Si K-shell atomic data were calculated with the flexible atomic code, which is a fully relativistic atomic program with configuration interaction taken into consideration. Detailed level accounting models were employed to calculate the absorption spectra. Results: We calculate the Si absorption spectra in local thermodynamic equilibrium conditions with temperature and density ranges of 20-70 eV and ~1020 cm-3 to ~1022 cm-3, respectively, and show the contributions of the lowly ionized ions to the K-shell absorption spectra of silicon. We also investigate the effects of the different atomic data on the absorption spectra. We find good agreement between our results and these from OPLIB. Conclusions: We find that the contributions from these lowly ionized ions cannot be neglected at relative low temperatures. Accurate experimental measurements are needed to benchmark the theoretical calculations.

  9. [Variations of IR-spectra of three coating materials before and after spraying on urea fertilizer].

    PubMed

    Liu, Xing-bin; Chen, Li-jun; Wu, Zhi-jie; Zhang, Guang-na

    2009-09-01

    Coated fertilizer is a hot spot in the domain of fertilizer research. Related researches mainly focused on the action mechanisms of coating materials in controlling the nutrient release from coated fertilizers, but less information is available on the structural variation of the coating materials before and after spraying on fertilizers, which is the key to whether we can directly use coating materials to extrapolate its mechanisms in controlling coated fertilizers' nutrient release. With polylactic acid (PLA), poly (butynelenes succinate) (PBS), and polycarbonate (PC) as test materials, the variations of their IR spectra before and after spraying on urea fertilizer were determined, which was aimed to supply theoretical basis for further studying the action mechanisms of coating materials in controlling coated fertilizers nutrient release. The results showed that PLA and PC had less variation in their IR spectra before and after spraying on urea fertilizer, while PBS acted in reverse, suggesting that the former two coating materials could be directly used for studying the patterns of nutrient release from coated fertilizers. PMID:19950629

  10. [Variations of IR-spectra of three coating materials before and after spraying on urea fertilizer].

    PubMed

    Liu, Xing-bin; Chen, Li-jun; Wu, Zhi-jie; Zhang, Guang-na

    2009-09-01

    Coated fertilizer is a hot spot in the domain of fertilizer research. Related researches mainly focused on the action mechanisms of coating materials in controlling the nutrient release from coated fertilizers, but less information is available on the structural variation of the coating materials before and after spraying on fertilizers, which is the key to whether we can directly use coating materials to extrapolate its mechanisms in controlling coated fertilizers' nutrient release. With polylactic acid (PLA), poly (butynelenes succinate) (PBS), and polycarbonate (PC) as test materials, the variations of their IR spectra before and after spraying on urea fertilizer were determined, which was aimed to supply theoretical basis for further studying the action mechanisms of coating materials in controlling coated fertilizers nutrient release. The results showed that PLA and PC had less variation in their IR spectra before and after spraying on urea fertilizer, while PBS acted in reverse, suggesting that the former two coating materials could be directly used for studying the patterns of nutrient release from coated fertilizers.

  11. Protonation effects on the UV/Vis absorption spectra of imatinib: A theoretical and experimental study

    NASA Astrophysics Data System (ADS)

    Grante, Ilze; Actins, Andris; Orola, Liana

    2014-08-01

    An experimental and theoretical investigation of protonation effects on the UV/Vis absorption spectra of imatinib showed systematic changes of absorption depending on the pH, and a new absorption band appeared below pH 2. These changes in the UV/Vis absorption spectra were interpreted using quantum chemical calculations. The geometry of various imatinib cations in the gas phase and in ethanol solution was optimized with the DFT/B3LYP method. The resultant geometries were compared to the experimentally determined crystal structures of imatinib salts. The semi-empirical ZINDO-CI method was employed to calculate the absorption lines and electronic transitions. Our study suggests that the formation of the extra near-UV absorption band resulted from an increase of imatinib trication concentration in the solution, while the rapid increase of the first absorption maximum could be attributed to both the formation of imatinib trication and tetracation.

  12. Applications of principal component analysis to breath air absorption spectra profiles classification

    NASA Astrophysics Data System (ADS)

    Kistenev, Yu. V.; Shapovalov, A. V.; Borisov, A. V.; Vrazhnov, D. A.; Nikolaev, V. V.; Nikiforova, O. Y.

    2015-12-01

    The results of numerical simulation of application principal component analysis to absorption spectra of breath air of patients with pulmonary diseases are presented. Various methods of experimental data preprocessing are analyzed.

  13. Determination of the major groups of phytoplankton pigments from the absorption spectra of total particulate matter

    NASA Technical Reports Server (NTRS)

    Hoepffner, Nicolas; Sathyendranath, Shubha

    1993-01-01

    The contributions of detrital particles and phytoplankton to total light absorption are retrieved by nonlinear regression on the absorption spectra of total particles from various oceanic regions. The model used explains more than 96% of the variance in the observed particle absorption spectra. The resulting absorption spectra of phytoplankton are then decomposed into several Gaussian bands reflecting absorption by phytoplankton pigments. Such a decomposition, combined with high-performance liquid chromatography data on phytoplankton pigment concentrations, allows the computation of specific absorption coefficients for chlorophylls a, b, and c and carotenoids. The spectral values of these in vivo absorption coefficients are then discussed, considering the effects of secondary pigments which were not measured quantitatively. We show that these coefficients can be used to reconstruct the absorption spectra of phytoplankton at various locations and depths. Discrepancies that do occur at some stations are explained in terms of particle size effect. These coefficients can be used to determine the concentrations of phytoplankton pigments in the water, given the absorption spectrum of total particles.

  14. A method for normalization of X-ray absorption spectra

    SciTech Connect

    Weng, T.-C.; Waldo, G.S.; Penner-Hahn, J.E.

    2010-07-20

    Accurate normalization of X-ray absorption data is essential for quantitative analysis of near-edge features. A method, implemented as the program MBACK, to normalize X-ray absorption data to tabulated mass absorption coefficients is described. Comparison of conventional normalization methods with MBACK demonstrates that the new normalization method is not sensitive to the shape of the background function, thus allowing accurate comparison of data collected in transmission mode with data collected using fluorescence ion chambers or solid-state fluorescence detectors. The new method is shown to have better reliability and consistency and smaller errors than conventional normalization methods. The sensitivity of the new normalization method is illustrated by analysis of data collected during an equilibrium titration.

  15. NIS, IR and Raman spectra with quantum mechanical calculations for analyzing the force field of hypericin model compounds

    SciTech Connect

    Ulicny, Jozef; Leulliot, Nicolas; Ghomi, Mahmoud; Grajcar, Lydie; Baron, Marie-Helene; Jobic, Herve

    1999-06-15

    Geometry optimization as well as harmonic force field calculations at HF and DFT levels of theory have been performed in order to elucidate the ground state properties of anthrone and emodin, two polycyclic conjugated molecules considered as hypericin model compounds. NIS, IR and FT-Raman spectra of these compounds have been recorded to validate the calculated results (geometry and vibrational modes). Calculated NIS spectra using the lowest energy conformers are in agreement with experiment. In addition, the intramolecular H-bonds in emodin predicted by the calculations can be evidenced using IR spectra as a function of temperature.

  16. Vibronic Structures in Absorption and Fluorescence Spectra of Firefly Oxyluciferin in Aqueous Solutions.

    PubMed

    Hiyama, Miyabi; Noguchi, Yoshifumi; Akiyama, Hidefumi; Yamada, Kenta; Koga, Nobuaki

    2015-01-01

    To elucidate the factors determining the spectral shapes and widths of the absorption and fluorescence spectra for keto and enol oxyluciferin and their conjugate bases in aqueous solutions, the intensities of vibronic transitions between their ground and first electronic excited states were calculated for the first time via estimation of the vibrational Franck-Condon factors. The major normal modes, overtones and combination tones in absorption and fluorescence spectra are similar for all species. The theoretical full widths at half maximum of absorption spectra are 0.4-0.7 eV and those for the fluorescence spectra are 0.4-0.5 eV, except for phenolate-keto that exhibits exceptionally sharp peak widths due to the dominance of the 0-0' or 0'-0 band. These spectral shapes and widths explain many relevant features of the experimentally observed spectra. PMID:25946599

  17. CO2 vertical profile retrieval from ground-based IR atmospheric spectra

    NASA Astrophysics Data System (ADS)

    Khosravian, Kobra; Loehnert, Ulrich; Turner, David; Ebell, Kerstin

    2016-04-01

    CO2 vertical profile retrieval from ground-based IR atmospheric spectra In this study, we developed an algorithm for retrieving the CO2 vertical profile from atmospheric ground-based zenith spectra in the mid IR. Providing the CO2 profile from continuous (24h/day) ground-based spectra would be a great potential for studying the carbon cycle, the evaluation of satellite measurements or the assessment of numerical models, which forecast the near-surface CO2 flux. In order to retrieve the CO2 profile, we used observations of the Atmospheric Emitted Radiance Interferometer (AERI) that was installed at the JOYCE (Jülich ObservatorY for Cloud Evolution), Germany in 2012. AERI measures downwelling infrared radiances from 520 cm-1 (3.3 μm) to 3020 cm-1 (19 μm) with a spectral resolution of 1 cm-1 and a temporal resolution of 1 minute. In a first step, we performed sensitivity studies for finding the most-suited spectral bands with highest sensitivity to the mean column amount of CO2 volume mixing ratio (VMR). Then an algorithm, known as AERIoe (Turner and Löhnert 2014), was applied to retrieve the mean column amount of CO2 VMR using simulated radiances in clear sky cases. AERIoe is a variational retrieval algorithm to provide information on Temperature, humidity, trace gases and clouds. The simulated AERI radiances were generated by a line by line radiative transfer model (LBLRTM) using model temperature, humidity and CO2 profile. The retrieval results of mean column amount of CO2 VMR are in good agreement with the true ones. In addition to the mean column amount, we modified AERIoe to retrieve the CO2 vertical profile. First results reveal that there is more than 1 degree of freedom for CO2 profile. We will show results how the retrieval method is refined to optimally exploit the information on the CO2 profile contained in the AERI measurements.

  18. Simulations of the infrared, Raman, and 2D-IR photon echo spectra of water in nanoscale silica pores

    DOE PAGES

    Burris, Paul C.; Laage, Damien; Thompson, Ward H.

    2016-05-20

    Vibrational spectroscopy is frequently used to characterize nanoconfined liquids and probe the effect of the confining framework on the liquid structure and dynamics relative to the corresponding bulk fluid. However, it is still unclear what molecular-level information can be obtained from such measurements. In this Paper, we address this question by using molecular dynamics (MD) simulations to reproduce the linear infrared (IR), Raman, and two-dimensional IR (2D-IR) photon echo spectra for water confined within hydrophilic (hydroxyl-terminated) silica mesopores. To simplify the spectra the OH stretching region of isotopically dilute HOD in D2O is considered. An empirical mapping approach is usedmore » to obtain the OH vibrational frequencies, transition dipoles, and transition polarizabilities from the MD simulations. The simulated linear IR and Raman spectra are in good general agreement with measured spectra of water in mesoporous silica reported in the literature. The key effect of confinement on the water spectrum is a vibrational blueshift for OH groups that are closest to the pore interface. The blueshift can be attributed to the weaker hydrogen bonds (H-bonds) formed between the OH groups and silica oxygen acceptors. Non-Condon effects greatly diminish the contribution of these OH moieties to the linear IR spectrum, but these weaker H-bonds are readily apparent in the Raman spectrum. The 2D-IR spectra have not yet been measured and thus the present results represent a prediction. Lastly, the simulated spectra indicate that it should be possible to probe the slower spectral diffusion of confined water compared to the bulk liquid by analysis of the 2D-IR spectra.« less

  19. Infrared absorption spectra of methylidene radicals in solid neon.

    PubMed

    Lu, Hsiao-Chi; Lo, Jen-Iu; Lin, Meng-Yeh; Peng, Yu-Chain; Chou, Sheng-Lung; Cheng, Bing-Ming; Ogilvie, J F

    2014-07-28

    Infrared absorption lines of methylidene--(12)C(1)H, (13)C(1)H, and (12)C(2)H--dispersed in solid neon at 3 K, recorded after photolysis of methane precursors with vacuum-ultraviolet light at 121.6 nm, serve as signatures of these trapped radicals.

  20. Recognition of disease-specific patterns in FT-IR spectra of human sera

    NASA Astrophysics Data System (ADS)

    Petrich, Wolfgang H.; Dolenko, Brion; Frueh, Johanna; Greger, Helmut; Jacob, Stephan; Keller, Franz; Nikulin, Alexander; Otto, Matthias; Quarder, Ortrud; Somorjai, Raymond L.; Staib, Arnulf; Werner, Gerhard H.; Wielinger, Hans

    2000-05-01

    Vibrational spectra in the mid-IR region show significant and reproducible correlation with the disease state of the blood donor. When focusing our 'disease pattern recognition (DPR)' approach onto the example of diabetes mellitus we can clearly separate samples obtained from healthy volunteers from those samples which organized from diabetes patients. Furthermore, we are able to differentiate between samples of type-1 diabetics and type-2 diabetics. For disease pattern recognition we use linear and/or regularized discriminant analysis. In a binary, supervised classification of an pair of the three disease states: healthy, diabetes type-1 and diabetes type-2, we consistently achieve sensitivities and specificities >= 80 percent. By setting stricter bounds on the range of acceptable probabilities of belonging to a certain class, we obtain even higher values for the sensitivity and the specificity on the expense of the fraction of 'crisply' classified samples. Since we are able to simultaneously quantify the concentrations of biochemical serum components like glucose, cholesterol and triglycerides from the identical set of spectra with regression coefficients > 90 percent, our approach allows for a direct cross-link between the molecule-based and the disease-based interpretation of the spectra.

  1. Data processing of absorption spectra from photoionized plasma experiments at Z

    SciTech Connect

    Hall, I. M.; Durmaz, T.; Mancini, R. C.; Bailey, J. E.; Rochau, G. A.

    2010-10-15

    We discuss the processing of x-ray absorption spectra from photoionized plasma experiments at Z. The data was recorded with an imaging spectrometer equipped with two elliptically bent potassium acid phthalate (KAP) crystals. Both time-integrated and time-resolved data were recorded. In both cases, the goal is to obtain the transmission spectra for quantitative analysis of plasma conditions.

  2. Absorption Spectroscopy and Imaging from the Visible through Mid-IR with 20 nm Resolution Using AFM probes

    NASA Astrophysics Data System (ADS)

    Centrone, Andrea

    2015-03-01

    Correlated nanoscale composition and optical property maps are important to engineer nanomaterials in applications ranging from photovoltaics to sensing and therapeutics. Wavelengths (λs) from the visible to near-IR probe electronic transitions in materials, providing information regarding band gap and defects while light in mid-IR probes vibrational transitions and provide chemical composition. However, light diffraction limits the lateral resolution of conventional micro-spectroscopic techniques to approximately λ/2, which is insufficient to image nanomaterials. Additionally, the λ-dependent resolution impedes direct comparison of spectral maps from different spectral ranges. Photo Thermal Induced Resonance (PTIR) is a novel technique that circumvents light diffraction by employing an AFM tip as a local detector for measuring light absorption with λ-independent nanoscale resolution. Our PTIR setup combines an AFM microscope with three lasers providing λ-tunability from 500 nm to 16000 nm continuously. The AFM tip transduces locally the sample thermal expansion induced by light absorption into large cantilever oscillations. Local absorption spectra (electronic or vibrational) and maps are obtained recording the amplitude of the tip deflection as a function of λ and position, respectively. The working principles of the PTIR technique will be described first, and nano-patterned polymer samples will be used to evaluate its lateral resolution, sensitivity and linearity. Results show that the PTIR signal intensity is proportional to the local absorbed energy suggesting applicability of this technique for quantitative chemical analysis at nanoscale, at least for thin (less than 1000 nm thick) samples. Additionally, a λ-independent resolution as high as 20 nm is demonstrated across the whole spectral range. In the second part of the talk, PTIR will be applied to image the dark plasmonic resonance of gold Asymmetric Split Ring Resonators (A-SRRs) in the mid-IR

  3. The absorption spectra of the complexes of uranium (VI) with some β-diketones

    USGS Publications Warehouse

    Feinstein, H.I.

    1956-01-01

    The absorption spectra of the complexes of uranium (VI) with four β-dike tones were determined under various conditions of pH, concentration of uranium, and alcohol concentration. Under optimum conditions, the maximum molar absorptivity (31,200) is obtained using 2-furoyltrifluoroacetone. This compares with about 4,000 and 19,000 for the thiocyanate and dibenzoylmethane complexes, respectively.

  4. Terahertz absorption spectra of oxidized polyethylene and their analysis by quantum chemical calculations

    NASA Astrophysics Data System (ADS)

    Komatsu, Marina; Hosobuchi, Masashi; Xie, Xiaojun; Cheng, Yonghong; Furukawa, Yukio; Mizuno, Maya; Fukunaga, Kaori; Ohki, Yoshimichi

    2014-09-01

    Low-density polyethylene, either cross-linked or not, was oxidized and its absorption spectra were measured in the terahertz (THz) range and infrared range. The absorption was increased by the oxidation in the whole THz range. In accord with this, infrared absorption due to carbonyl groups appears. Although these results indicate that the increase in absorption is induced by oxidation, its attribution to resonance or relaxation is unclear. To clarify this point, the vibrational frequencies of three-dimensional polyethylene models with and without carbonyl groups were quantum chemically calculated. As a result, it was clarified that optically inactive skeletal vibrations in polyethylene become active upon oxidation. Furthermore, several absorption peaks due to vibrational resonances are induced by oxidation at wavenumbers from 20 to 100 cm-1. If these absorption peaks are broadened and are superimposed on each other, the absorption spectrum observed experimentally can be reproduced. Therefore, the absorption is ascribable to resonance.

  5. Investigation of the electronic absorption spectra and the circular dichroism spectra of binuclear tetra-. mu. -mandelato complexes of Mo/sub 2//sup 4 +/

    SciTech Connect

    Golovaneva, I.F.; Akhmedov, E.L.; Kotel'nikova, A.S.

    1987-05-01

    The IR, electronic absorption, and circular dichroism spectra of the binuclear tetra-..mu..-mandelates of molybdenum(II) (Mo/sub 2//D-(-)-OOCCH(OH)C/sub 6/H/sub 5///sub 4/) and (Mo/sub 2//L-(+)-OOCCH(OH)C/sub 6/H/sub 5///sub 4/) have been studied. It has been established that Cotton effects are induced in all the electronic transitions of the symmetric (Mo/sub 2/O/sub 8/)chromophore under the influence of the asymmetric atom of the optically active mandelato ligand. The observed electronic transitions have been assigned on the basis of an analysis of the spectroscopic data obtained.

  6. Phyllosilicate absorption features in main-belt and outer-belt asteroid reflectance spectra.

    PubMed

    Vilas, F; Gaffey, M J

    1989-11-10

    Absorption features having depths up to 5% are identified in high-quality, high-resolution reflectance spectra of 16 dark asteroids in the main belt and in the Cybele and Hilda groups. Analogs among the CM2 carbonaceous chondrite meteorites exist for some of these asteroids, suggesting that these absorptions are due to iron oxides in phyllosilicates formed on the asteroidal surfaces by aqueous alteration processes. Spectra of ten additional asteroids, located beyond the outer edge of the main belt, show no discernible absorption features, suggesting that aqueous alteration did not always operate at these heliocentric distances.

  7. Kennard-Stepanov relation connecting absorption and emission spectra in an atomic gas.

    PubMed

    Moroshkin, Peter; Weller, Lars; Sass, Anne; Klaers, Jan; Weitz, Martin

    2014-08-01

    The Kennard-Stepanov relation describes a thermodynamic, Boltzmann-type scaling between the absorption and emission spectral profiles of an absorber, which applies in many liquid state dye solutions as well as in semiconductor systems. Here we examine absorption and emission spectra of rubidium atoms in a dense argon buffer gas environment. We demonstrate that the Kennard-Stepanov relation between absorption and emission spectra is well fulfilled in the collisionally broadened atomic gas system. Our experimental findings are supported by a simple theoretical model.

  8. UV-visible and infrared absorption spectra of gamma irradiated CuO-doped lithium phosphate, lead phosphate and zinc phosphate glasses: A comparative study

    NASA Astrophysics Data System (ADS)

    ElBatal, H. A.; Abdelghany, A. M.; ElBatal, F. H.; ElBadry, Kh. M.; Moustaffa, F. A.

    2011-10-01

    Undoped and CuO-doped lithium phosphate, lead phosphate and zinc phosphate glasses were prepared. UV-visible and infrared absorption spectra of the prepared samples were measured before and after successive gamma irradiation. Experimental optical spectra of the undoped samples reveal strong UV absorption bands, which are attributed to the presence of trace iron impurities in both the lithium and zinc phosphate glasses while the lead phosphate glass exhibits broad UV bands due to combined absorption of trace iron impurities and divalent lead ions. The CuO-doped glasses reveal an extra broad visible band due to Cu 2+ ions in octahedral coordination. The effects of gamma irradiation have been analyzed for both the sharing of all constituent components including trace iron impurities. Infrared absorption spectra of the prepared samples were investigated by the KBr disk technique. The FTIR spectra reveal main characteristic absorption bands due to different phosphate groups. The IR spectra are observed to be slightly affected by the increase of CuO in the doping level (0.2-3%) indicating the stability of the main network units.

  9. On the Use of Fourier Transform Infrared (FT-IR) Spectroscopy and Synthetic Calibration Spectra to Quantify Gas Concentrations in a Fischer-Tropsch Catalyst System.

    PubMed

    Ferguson, Frank T; Johnson, Natasha M; Nuth, Joseph A

    2015-10-01

    One possible origin of prebiotic organic material is that these compounds were formed via Fischer-Tropsch-type (FTT) reactions of carbon monoxide and hydrogen on silicate and oxide grains in the warm, inner-solar nebula. To investigate this possibility, an experimental system has been built in which the catalytic efficiency of different grain-analog materials can be tested. During such runs, the gas phase above these grain analogs is sampled using Fourier transform infrared (FT-IR) spectroscopy. To provide quantitative estimates of the concentration of these gases, a technique in which high-resolution spectra of the gases are calculated using the High-Resolution Transmission Molecular Absorption (HITRAN) database is used. Next, these spectra are processed via a method that mimics the processes giving rise to the instrumental line shape of the FT-IR spectrometer, including apodization, self-apodization, and broadening due to the finite resolution. The result is a very close match between the measured and computed spectra. This technique was tested using four major gases found in the FTT reactions: carbon monoxide, methane, carbon dioxide, and water. For the ranges typical of the FTT reactions, the carbon monoxide results were found to be accurate to within 5% and the remaining gases accurate to within 10%. These spectra can then be used to generate synthetic calibration data, allowing the rapid computation of the gas concentrations in the FTT experiments.

  10. On the Use of Fourier Transform Infrared (FT-IR) Spectroscopy and Synthetic Calibration Spectra to Quantify Gas Concentrations in a Fischer-Tropsch Catalyst System

    NASA Technical Reports Server (NTRS)

    Ferguson, Frank T.; Johnson, Natasha M.; Nuth, Joseph A., III

    2015-01-01

    One possible origin of prebiotic organic material is that these compounds were formed via Fischer-Tropsch-type (FTT) reactions of carbon monoxide and hydrogen on silicate and oxide grains in the warm, inner-solar nebula. To investigate this possibility, an experimental system has been built in which the catalytic efficiency of different grain-analog materials can be tested. During such runs, the gas phase above these grain analogs is sampled using Fourier transform infrared (FT-IR) spectroscopy. To provide quantitative estimates of the concentration of these gases, a technique in which high-resolution spectra of the gases are calculated using the high-resolution transmission molecular absorption (HITRAN) database is used. Next, these spectra are processed via a method that mimics the processes giving rise to the instrumental line shape of the FT-IR spectrometer, including apodization, self-apodization, and broadening due to the finite resolution. The result is a very close match between the measured and computed spectra. This technique was tested using four major gases found in the FTT reactions: carbon monoxide, methane, carbon dioxide, and water. For the ranges typical of the FTT reactions, the carbon monoxide results were found to be accurate to within 5% and the remaining gases accurate to within 10%. These spectra can then be used to generate synthetic calibration data, allowing the rapid computation of the gas concentrations in the FTT experiments.

  11. On the Use of Fourier Transform Infrared (FT-IR) Spectroscopy and Synthetic Calibration Spectra to Quantify Gas Concentrations in a Fischer-Tropsch Catalyst System.

    PubMed

    Ferguson, Frank T; Johnson, Natasha M; Nuth, Joseph A

    2015-10-01

    One possible origin of prebiotic organic material is that these compounds were formed via Fischer-Tropsch-type (FTT) reactions of carbon monoxide and hydrogen on silicate and oxide grains in the warm, inner-solar nebula. To investigate this possibility, an experimental system has been built in which the catalytic efficiency of different grain-analog materials can be tested. During such runs, the gas phase above these grain analogs is sampled using Fourier transform infrared (FT-IR) spectroscopy. To provide quantitative estimates of the concentration of these gases, a technique in which high-resolution spectra of the gases are calculated using the High-Resolution Transmission Molecular Absorption (HITRAN) database is used. Next, these spectra are processed via a method that mimics the processes giving rise to the instrumental line shape of the FT-IR spectrometer, including apodization, self-apodization, and broadening due to the finite resolution. The result is a very close match between the measured and computed spectra. This technique was tested using four major gases found in the FTT reactions: carbon monoxide, methane, carbon dioxide, and water. For the ranges typical of the FTT reactions, the carbon monoxide results were found to be accurate to within 5% and the remaining gases accurate to within 10%. These spectra can then be used to generate synthetic calibration data, allowing the rapid computation of the gas concentrations in the FTT experiments. PMID:26449809

  12. Artifacts in Absorption Measurements of Organometal Halide Perovskite Materials: What Are the Real Spectra?

    PubMed

    Tian, Yuxi; Scheblykin, Ivan G

    2015-09-01

    Organometal halide (OMH) perovskites have attracted lots of attention over the last several years due to their very promising performance as the materials for solar cells and light-emitting devices. Photophysical processes in these hybrid organic-inorganic semiconductors are still heavily debated. To know precise absorption spectra is absolutely necessary for quantitative understanding of the fundamental properties of OMH perovskites. We show that to measure the absorption of perovskite materials correctly is a difficult task which could be easily overlooked by the community. Many of the published absorption spectra exhibit a characteristic step-like featureless shape due to light scattering, high optical density of individual perovskite crystals and poor coverage of the substrate. We show how to recognize these artifacts, to avoid them, and to use absorption spectra of films for estimation of the surface coverage ratio. PMID:27120683

  13. Autophaser: an algorithm for automated generation of absorption mode spectra for FT-ICR MS.

    PubMed

    Kilgour, David P A; Wills, Rebecca; Qi, Yulin; O'Connor, Peter B

    2013-04-16

    Phase correction of Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry data allows the spectra to be presented in absorption mode. Absorption mode spectra offer superior mass resolving power (up to a factor of 2), mass accuracy, and sensitivity over the conventional magnitude mode. Hitherto, the use of absorption mode in FT-ICR mass spectrometry has required either specially adapted instrumentation or a manually intensive process of phase correction or has ignored the potentially significant effects of image charge and the associated frequency shifts. Here we present an algorithm that allows spectra recorded on unadapted FT-ICR mass spectrometers to be phase corrected, their baseline deviations removed, and then an absorption mode spectrum presented in an automated manner that requires little user interaction. PMID:23373960

  14. Autophaser: an algorithm for automated generation of absorption mode spectra for FT-ICR MS.

    PubMed

    Kilgour, David P A; Wills, Rebecca; Qi, Yulin; O'Connor, Peter B

    2013-04-16

    Phase correction of Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry data allows the spectra to be presented in absorption mode. Absorption mode spectra offer superior mass resolving power (up to a factor of 2), mass accuracy, and sensitivity over the conventional magnitude mode. Hitherto, the use of absorption mode in FT-ICR mass spectrometry has required either specially adapted instrumentation or a manually intensive process of phase correction or has ignored the potentially significant effects of image charge and the associated frequency shifts. Here we present an algorithm that allows spectra recorded on unadapted FT-ICR mass spectrometers to be phase corrected, their baseline deviations removed, and then an absorption mode spectrum presented in an automated manner that requires little user interaction.

  15. Accurate convergence of transient-absorption spectra using pulsed lasers.

    PubMed

    Brazard, Johanna; Bizimana, Laurie A; Turner, Daniel B

    2015-05-01

    Transient-absorption spectroscopy is a common and well-developed technique for measuring time-dependent optical phenomena. One important aspect, especially for measurements using pulsed lasers, is how to average multiple data acquisition events. Here, we use a mathematical analysis method based on covariance to evaluate various averaging schemes. The analysis reveals that the baseline and the signal converge to incorrect values without balanced detection of the probe, shot-by-shot detection, and a specific method of averaging. Experiments performed with sub-7 fs pulses confirm the analytic results and reveal insights into molecular excited-state vibrational dynamics.

  16. Spitzer IRS Spectra of Debris Disks in the Scorpius-Centaurus OB Association

    NASA Astrophysics Data System (ADS)

    Jang-Condell, Hannah; Chen, Christine H.; Mittal, Tushar; Manoj, P.; Watson, Dan; Lisse, Carey M.; Nesvold, Erika; Kuchner, Marc

    2015-08-01

    We analyze spectra obtained with the Spitzer Infrared Spectrograph (IRS) of 110 B-, A-, F-, and G-type stars with optically thin infrared excess in the Scorpius-Centaurus OB association. The ages of these stars range from 11 to 17 Myr. We fit the infrared excesses observed in these sources by Spitzer IRS and the Multiband Imaging Photometer for Spitzer (MIPS) to simple dust models according to Mie theory. We find that nearly all of the objects in our study can be fit by one or two belts of dust. Dust around lower mass stars appears to be closer in than around higher mass stars, particularly for the warm dust component in the two-belt systems, suggesting a mass-dependent evolution of debris disks around young stars. For those objects with stellar companions, all dust distances are consistent with truncation of the debris disk by the binary companion. The gaps between several of the two-belt systems can place limits on the planets that might lie between the belts, potentially constraining the mass and locations of planets that may be forming around these stars.

  17. SPITZER IRS SPECTRA OF DEBRIS DISKS IN THE SCORPIUS–CENTAURUS OB ASSOCIATION

    SciTech Connect

    Jang-Condell, Hannah; Chen, Christine H.; Mittal, Tushar; Lisse, Carey M.; Manoj, P.; Watson, Dan; Nesvold, Erika; Kuchner, Marc

    2015-08-01

    We analyze spectra obtained with the Spitzer Infrared Spectrograph (IRS) of 110 B-, A-, F-, and G-type stars with optically thin infrared excess in the Scorpius–Centaurus OB association. The ages of these stars range from 11 to 17 Myr. We fit the infrared excesses observed in these sources by Spitzer IRS and the Multiband Imaging Photometer for Spitzer (MIPS) to simple dust models according to Mie theory. We find that nearly all of the objects in our study can be fit by one or two belts of dust. Dust around lower mass stars appears to be closer in than around higher mass stars, particularly for the warm dust component in the two-belt systems, suggesting a mass-dependent evolution of debris disks around young stars. For those objects with stellar companions, all dust distances are consistent with truncation of the debris disk by the binary companion. The gaps between several of the two-belt systems can place limits on the planets that might lie between the belts, potentially constraining the mass and locations of planets that may be forming around these stars.

  18. Monitoring the variability of intrinsic absorption lines in quasar spectra , ,

    SciTech Connect

    Misawa, Toru; Charlton, Jane C.; Eracleous, Michael

    2014-09-01

    We have monitored 12 intrinsic narrow absorption lines (NALs) in five quasars and seven mini-broad absorption lines (mini-BALs) in six quasars for a period of 4-12 yr (1-3.5 yr in the quasar rest-frame). We present the observational data and the conclusions that follow immediately from them, as a prelude to a more detailed analysis. We found clear variability in the equivalent widths (EWs) of the mini-BAL systems but no easily discernible changes in their profiles. We did not detect any variability in the NAL systems or in narrow components that are often located at the center of mini-BAL profiles. Variations in mini-BAL EWs are larger at longer time intervals, reminiscent of the trend seen in variable BALs. If we assume that the observed variations result from changes in the ionization state of the mini-BAL gas, we infer lower limits to the gas density ∼10{sup 3}-10{sup 5} cm{sup –3} and upper limits on the distance of the absorbers from the central engine of the order of a few kiloparsecs. Motivated by the observed variability properties, we suggest that mini-BALs can vary because of fluctuations of the ionizing continuum or changes in partial coverage while NALs can vary primarily because of changes in partial coverage.

  19. Absorption spectra and speciation of plutonium(VI) with phosphate

    SciTech Connect

    Weger, H.T.; Reed, D.

    1996-02-01

    Plutonium(VI)-phosphate species in aqueous solution, at pH < 2.4, formed two species: PuO{sub 2}H{sub 2}PO{sub 4}{sup +} (characterized by an 835 nm absorption band) and the solid phase PuO{sub 2}(H{sub 2}PO{sub 4}){sub 2}. The stability constant {beta} for the PuO{sub 2}H{sub 2}PO{sub 4}{sup +} species was determined to be log {beta} = 2.1 {+-} 0.1 (ionic strength = 0.6--0.9 M) and log {beta}{sup T} = 2.6 {+-} 0.15 (zero ionic strength). Four Pu(VI)-phosphate species (absorption bands at 842, 846, 857, and 866 nm) formed at pH = 2.4 to 12.2 and are characterized by polynuclear behavior, the formation of precipitates, and colloidal properties. The 842 and 846 nm species are believed to be [PuO{sub 2}(HPO{sub 4}){sub m}]{sub n} and [PuO{sub 2}(NaPO{sub 4}){sub m}]{sub n}. The 857 and 866 nm species area as yet unidentified. The speciation of plutonium with phosphate is of interest to radionuclide migration studies because phosphate is present in many groundwaters and may be used as an actinide getter in nuclear waste disposal. An actinide getter is a complexing agent that forms insoluble phases with actinides, thereby reducing their migration.

  20. Chemical Sensitivity of the Sulfur K-Edge X-ray Absorption Spectra of Organic Disulfides.

    PubMed

    Pickering, Ingrid J; Barney, Monica; Cotelesage, Julien J H; Vogt, Linda; Pushie, M Jake; Nissan, Andrew; Prince, Roger C; George, Graham N

    2016-09-22

    Sulfur K-edge X-ray absorption spectroscopy increasingly is used as a tool to provide speciation information about the sulfur chemical form in complex samples, with applications ranging from fossil fuels to soil science to health research. As part of an ongoing program of systematic investigations of the factors that affect the variability of sulfur K near-edge spectra, we have examined the X-ray absorption spectra of a series of organic symmetric disulfide compounds. We have used polarized sulfur K-edge spectra of single crystals of dibenzyl disulfide to confirm the assignments of the major transitions in the spectrum as 1s → (S-S)σ* and 1s → (S-C)σ*. We also have examined the solution spectra of an extended series of disulfides and show that the spectra change in a systematic and predictable manner with the nature of the external group. PMID:27571342

  1. Using 2D Correlation Analysis to Enhance Spectral Information Available from Highly Spatially Resolved AFM-IR Spectra.

    PubMed

    Marcott, Curtis; Lo, Michael; Hu, Qichi; Kjoller, Kevin; Boskey, Adele; Noda, Isao

    2014-07-01

    The recent combination of atomic force microscopy and infrared spectroscopy (AFM-IR) has led to the ability to obtain IR spectra with nanoscale spatial resolution, nearly two orders-of-magnitude better than conventional Fourier transform infrared (FT-IR) microspectroscopy. This advanced methodology can lead to significantly sharper spectral features than are typically seen in conventional IR spectra of inhomogeneous materials, where a wider range of molecular environments are coaveraged by the larger sample cross section being probed. In this work, two-dimensional (2D) correlation analysis is used to examine position sensitive spectral variations in datasets of closely spaced AFM-IR spectra. This analysis can reveal new key insights, providing a better understanding of the new spectral information that was previously hidden under broader overlapped spectral features. Two examples of the utility of this new approach are presented. Two-dimensional correlation analysis of a set of AFM-IR spectra were collected at 200-nm increments along a line through a nucleation site generated by remelting a small spot on a thin film of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate). There are two different crystalline carbonyl band components near 1720 cm(-1) that sequentially disappear before a band at 1740 cm(-1) due to more disordered material appears. In the second example, 2D correlation analysis of a series of AFM-IR spectra spaced every 1 micrometer of a thin cross section of a bone sample measured outward from an osteon center of bone growth. There are many changes in the amide I and phosphate band contours, suggesting changes in the bone structure are occurring as the bone matures.

  2. Theoretical study of IR and photoelectron spectra of small gallium-arsenide clusters

    SciTech Connect

    Pouchan, Claude; Marchal, Rémi; Hayashi, Shinsuke

    2015-01-22

    Relative stabilities of small Ga{sub n}As{sub m} clusters, as well as their structural electronic and vibrational properties, were computed and analysed using a CCSD(T) reference method since experimental data in this area are sparse or unknown. With the aim of investigating larger clusters, we explored several DFT functionals and basis sets able to mimic the reliable CCSD(T) approach. Among them, the PBE0/SBKJC+sp,d appears as the most efficient to describe the structural and vibrational properties since average differences of about 0.042Å and 5.1cm{sup −1} were obtained for bond lengths and fundamental vibrational frequencies, respectively for the first small clusters [1] of the series found from our GSAM method [2]. As further test, this model is used in order to investigate and revisit an experimental IR spectrum of Ga{sub n}As{sub m} mixture previously published by Li et al. [3]. More complicated is the difficulty which arises in the electronic description due to the presence of numerous low lying electronic states nearly degenerated to correctly describe the electronic structure. The case of Ga{sub 2}As will be discussed and the photoelectron spectra of the Ga{sub 2}As anion reanalyzed on the ground of our calculations [4] comparatively to the experimental spectra obtained by Neumark and co-workers [5].

  3. Absorption spectra of shocked liquid CS/sub 2/

    SciTech Connect

    Dallman, J.C.

    1985-01-01

    The importance of shock initiation of high explosives (HE) was understood as early as 1863 when Alfred Nobel introduced the detonator as a means of detonating nitroglycerine. The critical pressure rise times required to achieve shock initiation and steady propagation of detonation are determined by the chemical and mechanical properties of an explosive. Although progress has been made in the understanding of the effects of mechanical properties, the detailed effects of high pressures on chemical reaction mechanisms are still only poorly understood. This paper reports the results of two experiments using CS/sub 2/, which is known to undergo electronic state transitions when shocked to high pressures. The goal of these experiments was to examine the known shock-generated expansion of CS/sub 2/ absorption bands while generating the shocks with a flyer plate system driven by high explosives.

  4. Monitoring the Variability of Intrinsic Absorption Lines in Quasar Spectra

    NASA Astrophysics Data System (ADS)

    Misawa, Toru; Charlton, Jane C.; Eracleous, Michael

    2014-09-01

    We have monitored 12 intrinsic narrow absorption lines (NALs) in five quasars and seven mini-broad absorption lines (mini-BALs) in six quasars for a period of 4-12 yr (1-3.5 yr in the quasar rest-frame). We present the observational data and the conclusions that follow immediately from them, as a prelude to a more detailed analysis. We found clear variability in the equivalent widths (EWs) of the mini-BAL systems but no easily discernible changes in their profiles. We did not detect any variability in the NAL systems or in narrow components that are often located at the center of mini-BAL profiles. Variations in mini-BAL EWs are larger at longer time intervals, reminiscent of the trend seen in variable BALs. If we assume that the observed variations result from changes in the ionization state of the mini-BAL gas, we infer lower limits to the gas density ~103-105 cm-3 and upper limits on the distance of the absorbers from the central engine of the order of a few kiloparsecs. Motivated by the observed variability properties, we suggest that mini-BALs can vary because of fluctuations of the ionizing continuum or changes in partial coverage while NALs can vary primarily because of changes in partial coverage. Based on data collected at Subaru telescope, which is operated by the National Astronomical Observatory of Japan. Based on observations obtained at the European Southern Observatory at La Silla, Chile in programs 65.O-0063(B), 65.O-0474(A), 67.A-0078(A), 68.A-0461(A), 69.A-0204(A), 70.B-0522(A), 072.A-0346(A), 076.A-0860(A), 079.B-0469(A), and 166.A-0106(A).

  5. [The unique reflection spectra and IR characteristics of golden-color seawater cultured pearl].

    PubMed

    Yan, Jun; Tao, Jin-Bo; Deng, Xiao-Qiong; Hu, Xian-Chao; Wang, Xiao-Xiang

    2014-05-01

    A comparative study on the natural-color golden seawater cultured pearls and the treated-color golden seawater cultured pearls were carried out by UV-Vis reflectance spectra. Furthermore, the frequency variations of v3, v1 , v2 and v4 bands of the aragonites (a crystal form of calcium carbonate) with the positions of nacreous layer and nucleus in natural or treated-color golden-color seawater cultured pearls were firstly systematically measured. The results showed that: (1) based on the results of UV-Vis reflectance spectra of natural or treated-color golden seawater cultured pearls, interestingly, it was firstly found that the natural-color golden one displays slight varied UV-Vis reflection spectra because of its different surface microstructure located on the outer nacreous layer. Meanwhile, according to the characteristic of UV-Vis reflectance spectra of treated-color golden ones, the treated-color ones were firstly classified to four categories. (2) The frequency of v2 band of aragonite in nacreous layer of natural-color or treated-color golden pearls was greater than the other one from theirs corresponding nucleus, namely A clear blue shift was observed in the former. But the other bands were not altered in the positions of nacreous layer and nucleus, and had the same valves with synthetic aragonites. Additionally, the location of absorption bands of aragonite in nacreous layer of natural or treated-color golden pearls had no frequency shift, which indicates that the behavior of color-treating had no effect on the crystal structure of golden pearls.

  6. Simultaneous Fitting of Absorption Spectra and Their Second Derivatives for an Improved Analysis of Protein Infrared Spectra.

    PubMed

    Baldassarre, Maurizio; Li, Chenge; Eremina, Nadejda; Goormaghtigh, Erik; Barth, Andreas

    2015-01-01

    Infrared spectroscopy is a powerful tool in protein science due to its sensitivity to changes in secondary structure or conformation. In order to take advantage of the full power of infrared spectroscopy in structural studies of proteins, complex band contours, such as the amide I band, have to be decomposed into their main component bands, a process referred to as curve fitting. In this paper, we report on an improved curve fitting approach in which absorption spectra and second derivative spectra are fitted simultaneously. Our approach, which we name co-fitting, leads to a more reliable modelling of the experimental data because it uses more spectral information than the standard approach of fitting only the absorption spectrum. It also avoids that the fitting routine becomes trapped in local minima. We have tested the proposed approach using infrared absorption spectra of three mixed α/β proteins with different degrees of spectral overlap in the amide I region: ribonuclease A, pyruvate kinase, and aconitase. PMID:26184143

  7. Measurement and feature analysis of absorption spectra of four algal species

    NASA Astrophysics Data System (ADS)

    Zhu, Jianhua; Zhou, Hongli; Han, Bing; Li, Tongji

    2016-04-01

    Two methods for particulate pigments (i.e., quantitative filter technique, QFT, and in vivo measurement, InVivo, respectively) and two methods for dissolved pigments (i.e., Acetone Extracts, AceEx, and high-performance liquid chromatography, HPLC, respectively) were used to obtain the optical absorption coefficient spectra for cultures of four typical algal species. Through normalization and analysis of the spectra, it is shown that (1) the four methods are able to measure optical absorption spectra of particulate and/or dissolved pigments; (2) that the optical absorption spectra of particulate and dissolved pigments were consistent in terms of the peak position in the blue wavelength, and the difference of the peak position in the near infrared wavelength was ~10 nm between each other; and (3) that the leveling effect of the absorption spectra of particulate pigments was significant. These four methods can all effectively measure the absorption coefficients of phytoplankton pigments, while each one has its unique advantages in different applications. Therefore, appropriate method should be carefully selected for various application due to their intrinsic difference.

  8. Simple Monte Carlo methods to estimate the spectra evaluation error in differential-optical-absorption spectroscopy.

    PubMed

    Hausmann, M; Brandenburger, U; Brauers, T; Dorn, H P

    1999-01-20

    Differential-optical-absorption spectroscopy (DOAS) permits the sensitive measurement of concentrations of trace gases in the atmosphere. DOAS is a technique of well-defined accuracy; however, the calculation of a statistically sound measurement precision is still an unsolved problem. Usually one evaluates DOAS spectra by performing least-squares fits of reference absorption spectra to the measured atmospheric absorption spectra. Inasmuch as the absorbance from atmospheric trace gases is usually very weak, with optical densities in the range from 10(-5) to 10(-3), interference caused by the occurrence of nonreproducible spectral artifacts often determines the detection limit and the measurement precision. These spectral artifacts bias the least-squares fitting result in two respects. First, spectral artifacts to some extent are falsely interpreted as real absorption, and second, spectral artifacts add nonstatistical noise to spectral residuals, which results in a significant misestimation of the least-squares fitting error. We introduce two new approaches to investigate the evaluation errors of DOAS spectra accurately. The first method, residual inspection by cyclic displacement, estimates the effect of false interpretation of the artifact structures. The second method applies a statistical bootstrap algorithm to estimate properly the error of fitting, even in cases when the condition of random and independent scatter of the residual signal is not fulfilled. Evaluation of simulated atmospheric measurement spectra shows that a combination of the results of both methods yields a good estimate of the spectra evaluation error to within an uncertainty of ~10%.

  9. The Fundamental Quadrupole Band of (14)N2: Line Positions from High-Resolution Stratospheric Solar Absorption Spectra

    NASA Technical Reports Server (NTRS)

    Rinsland, C. P.; Zander, R.; Goldman, A.; Murcray, F. J.; Murcray, D. G.; Grunson, M. R.; Farmer, C. B.

    1991-01-01

    The purpose of this note is to report accurate measurements of the positions of O- and S-branch lines of the (1-0) vibration-rotation quadrupole band of molecular nitrogen ((14)N2) and improved Dunham coefficients derived from a simultaneous least-squares analysis of these measurements and selected infrared and far infrared data taken from the literature. The new measurements have been derived from stratospheric solar occultation spectra recorded with Fourier transform spectrometer (FTS) instruments operated at unapodized spectral resolutions of 0.002 and 0.01 /cm. The motivation for the present investigation is the need for improved N2 line parameters for use in IR atmospheric remote sensing investigations. The S branch of the N2 (1-0) quadrupole band is ideal for calibrating the line-of-sight airmasses of atmospheric spectra since the strongest lines are well placed in an atmospheric window, their absorption is relatively insensitive to temperature and is moderately strong (typical line center depths of 10 to 50% in high-resolution ground-based solar spectra and in lower stratospheric solar occultation spectra), and the volume mixing ratio of nitrogen is constant in the atmosphere and well known. However, a recent investigation has'shown the need to improve the accuracies of the N2 fine positions, intensities, air-broadened half-widths, and their temperature dependences to fully exploit this calibration capability (1). The present investigation addresses the problem of improving the accuracy of the N2 line positions.

  10. Automatic stellar spectra parameterisation in the IR Ca ii triplet region

    NASA Astrophysics Data System (ADS)

    Kordopatis, G.; Recio-Blanco, A.; de Laverny, P.; Bijaoui, A.; Hill, V.; Gilmore, G.; Wyse, R. F. G.; Ordenovic, C.

    2011-11-01

    Context. Galactic archaeology aims to determine the evolution of the Galaxy from the chemical and kinematical properties of its individual stars. This requires the analysis of data from large spectroscopic surveys, with sample sizes in tens of thousands at present, with millions of stars being reached in the near future. Such large samples require automated analysis techniques and classification algorithms to obtain robust estimates of the stellar parameter values. Several on-going and planned spectroscopic surveys have selected their wavelength region to contain the IR Ca ii triplet (~λλ 8500 Å) and the work presented in this paper focuses on the automatic analysis of such spectra. Aims: We aim to develop and test an automatic method by which one can obtain estimates of values of the stellar atmospheric parameters (effective temperature, surface gravity, overall metallicity) from a stellar spectrum. We also explore the degeneracies in parameter space, estimate the uncertainties in the derived parameter values and investigate the consequences of these limitations for achieving the goals of galactic archaeology. Methods: We investigated two algorithms, both of which compare the observed spectrum to a grid of synthetic spectra, but each uses a different mathematical approach for finding the optimum match and hence the best values of the stellar parameters. Our investigation of these algorithms' robustness can be widely applied because it amplifies the main problems that the other methods can encounter. The first algorithm, MATISSE, derives the values of each stellar parameter through a local fit to the spectrum such that each pixel in wavelength space is treated separately. The sensitivity of the flux at each wavelength to the value of a given stellar parameter is determined from the synthetic spectra. The observed spectrum is then projected using these sensitivity vectors to give an estimated value of the stellar parameters. This value depends on finding the true

  11. Absorption spectra of typical space materials in the vacuum ultraviolet

    NASA Technical Reports Server (NTRS)

    Muscari, J. A.

    1981-01-01

    In order to develop a data base for potential optical degradation of space vacuum ultraviolet instruments, the collected volatile condensed material (CVCM) transmittance was measured in the wavelength region from 115 nm to 300 nm. The parent outgassing materials included: the adhesives, Ablebond 36-2, Trabond BB-2116, EA-9309, and Scotchweld 2216; the paints, Chemglaze Z-306, Z-306 over 9922 primer, Z-306 over AP-131 primer, Cat-A-Lac 463-3-8, 463-3-8 over primer, 3M Nextel 401-C10, and 401-C10 over 901-P1 primer; the resins, Fiberite 934, Solithane 113/C113-300 Formulation no. 1, and 113/C113-300 Formulation no. 8; the lubricants, Lube-Lok 4306 and RT/Duroid 5813; and the double-sided adhesive tape 3M-415. The effect of thermal vacuum conditioning of selected materials was also studied. The transmittance measurements were used to calculate the absorption coefficient for each of 28 different source materials versus wavelength.

  12. High-resolution IR Absorption Spectroscopy of Polycyclic Aromatic Hydrocarbons: The Realm of Anharmonicity

    NASA Astrophysics Data System (ADS)

    Maltseva, Elena; Petrignani, Annemieke; Candian, Alessandra; Mackie, Cameron J.; Huang, Xinchuan; Lee, Timothy J.; Tielens, Alexander G. G. M.; Oomens, Jos; Buma, Wybren Jan

    2015-11-01

    We report on an experimental and theoretical investigation of the importance of anharmonicity in the 3-μm CH stretching region of polycyclic aromatic hydrocarbon (PAH) molecules. We present mass-resolved, high-resolution spectra of the gas-phase cold (∼4 K) linear PAH molecules naphthalene, anthracene, and tetracene. The measured IR spectra show a surprisingly high number of strong vibrational bands. For naphthalene, the observed bands are well separated and limited by the rotational contour, revealing the band symmetries. Comparisons are made to the harmonic and anharmonic approaches of the widely used Gaussian software. We also present calculated spectra of these acenes using the computational program SPECTRO, providing anharmonic predictions with a Fermi-resonance treatment that utilizes intensity redistribution. We demonstrate that the anharmonicity of the investigated acenes is strong, dominated by Fermi resonances between the fundamental and double combination modes, with triple combination bands as possible candidates to resolve remaining discrepancies. The anharmonic spectra as calculated with SPECTRO lead to predictions of the main bands that fall within 0.5% of the experimental frequencies. The implications for the aromatic infrared bands, specifically the 3-μm band, are discussed.

  13. HIGH-RESOLUTION IR ABSORPTION SPECTROSCOPY OF POLYCYCLIC AROMATIC HYDROCARBONS: THE REALM OF ANHARMONICITY

    SciTech Connect

    Maltseva, Elena; Buma, Wybren Jan; Petrignani, Annemieke; Candian, Alessandra; Mackie, Cameron J.; Tielens, Alexander G. G. M.; Huang, Xinchuan; Lee, Timothy J.; Oomens, Jos E-mail: petrignani@strw.leidenuniv.nl

    2015-11-20

    We report on an experimental and theoretical investigation of the importance of anharmonicity in the 3-μm CH stretching region of polycyclic aromatic hydrocarbon (PAH) molecules. We present mass-resolved, high-resolution spectra of the gas-phase cold (∼4 K) linear PAH molecules naphthalene, anthracene, and tetracene. The measured IR spectra show a surprisingly high number of strong vibrational bands. For naphthalene, the observed bands are well separated and limited by the rotational contour, revealing the band symmetries. Comparisons are made to the harmonic and anharmonic approaches of the widely used Gaussian software. We also present calculated spectra of these acenes using the computational program SPECTRO, providing anharmonic predictions with a Fermi-resonance treatment that utilizes intensity redistribution. We demonstrate that the anharmonicity of the investigated acenes is strong, dominated by Fermi resonances between the fundamental and double combination modes, with triple combination bands as possible candidates to resolve remaining discrepancies. The anharmonic spectra as calculated with SPECTRO lead to predictions of the main bands that fall within 0.5% of the experimental frequencies. The implications for the aromatic infrared bands, specifically the 3-μm band, are discussed.

  14. High-Resolution IR Absorption Spectroscopy of Polycyclic Aromatic Hydrocarbons: The Realm of Anharmonicity

    NASA Technical Reports Server (NTRS)

    Maltseva, Elena; Petrignani, Annemieke; Candian, Alessandra; Mackie, Cameron J.; Huang, Xinchuan; Lee, Timothy J.; Tielens, Alexander G. G. M.; Oomens, Jos; Buma, Wybren Jan

    2016-01-01

    We report on an experimental and theoretical investigation of the importance of anharmonicity in the 3 micrometers CH stretching region of Polycyclic Aromatic Hydrocarbon (PAH) molecules. We present mass-resolved, high-resolution spectra of the gas-phase cold ((is) approximately 4K) linear PAH molecules naphthalene, anthracene, and tetracene. The measured IR spectra show a surprisingly high number of strong vibrational bands. For naphthalene, the observed bands are well separated and limited by the rotational contour, revealing the band symmetries. Comparisons are made to the harmonic and anharmonic approaches of the widely used Gaussian software. We also present calculated spectra of these acenes using the computational program SPECTRO, providing anharmonic predictions enhanced with a Fermi-resonance treatment that utilizes intensity redistribution. We demonstrate that the anharmonicity of the investigated acenes is strong, dominated by Fermi resonances between the fundamental and double combination modes, with triple combination bands as possible candidates to resolve remaining discrepancies. The anharmonic spectra as calculated with SPECTRO lead to predictions of the main modes that fall within 0.5% of the experimental frequencies. The implications for the Aromatic Infrared Bands, specifically the 3-m band are discussed.

  15. New Absorption Spectra of CH_2 Near 780 NM

    NASA Astrophysics Data System (ADS)

    Xin, Ju; Wang, Zhong; Sears, Trevor J.

    2009-06-01

    The near infrared and visible spectrum (tilde{b}^1B_1 - tilde{a}^1A_1) of singlet CH_2 has been the subject of much study. However, the region between the red end of the visible part of the spectrum and about 800 nm has not been recorded since the pioneering work of Herzberg and Johns. We have remeasured the absorption spectrum between approximately 769 and 806 nm at near shot-noise-limited sensitivity and Doppler-limited resolution using a frequency-modulated extended cavity diode laser source. Rotational branches in 7 vibronic bands involving K_a = 0-4 have been assigned using known ground state combination differences. Most of them have not previously been observed and some reassignments of the Herzberg and Johns analysis have been made. Comparison with the most complete available calculated ro-vibronic energy level structure helped considerably in making the assignments, and the observed vibronic levels are assigned to levels of both tilde{a} and tilde{b} electronic character. The calculated energy levels show moderate, up to 10 cm^{-1}, apparently random, differences from the observed levels The new data will certainly help to refine the singlet potential and also provide additional avenues for future kinetics and dynamics studies of the radical. G. Herzberg and J. W. C. Johns Proc. R. Soc. London Ser. A, 295, 107 (1966) J. -P. Gu, G. Hirsch, R J Buenker, M. Brumm, G. Osmann, P. R. Bunker and P. Jensen J. Molec. Struc., 517-8, 247 (2000) Acknowledgments: Work at Brookhaven National Laboratory was carried out under Contract No. DE-AC02-98CH10886 with the U.S. Department of Energy. Ju Xin acknowledges support from the Faculty and Student Teams program of the Educational Programs Department at Brookhaven National Laboratory.

  16. Theoretical studies on absorption, emission, and resonance Raman spectra of Coumarin 343 isomers.

    PubMed

    Wu, Wenpeng; Cao, Zexing; Zhao, Yi

    2012-03-21

    The vibrationally resolved spectral method and quantum chemical calculations are employed to reveal the structural and spectral properties of Coumarin 343 (C343), an ideal candidate for organic dye photosensitizers, in vacuum and solution. The results manifest that the ground-state energies are dominantly determined by different placements of hydrogen atom in carboxylic group of C343 conformations. Compared to those in vacuum, the electronic absorption spectra in methanol solvent show a hyperchromic property together with the redshift and blueshift for the neutral C343 isomers and their deprotonated anions, respectively. From the absorption, emission, and resonance Raman spectra, it is found that the maximal absorption and emission come from low-frequency modes whereas the high-frequency modes have high Raman activities. The detailed spectra are further analyzed for the identification of the conformers and understanding the potential charge transfer mechanism in their photovoltaic applications.

  17. Separation of scattering and absorption contributions in UV/visible spectra of resonant systems.

    PubMed

    Micali, N; Mallamace, F; Castriciano, M; Romeo, A; Scolaro, L M

    2001-10-15

    Resonance light scattering (RLS) is a phenomenon due to an enhancement of the scattered light in close proximity to an absorption band. The effect is easily detectable in the case of strongly absorbing chromophores, which are able to interact, thus leading to large aggregates (Pasternack, R. F.; Collings, P. J. Science 1995, 269, 935). The measurement of absorption spectra from solutions containing such resonant systems can lead to misleading results. In this paper, a simple method is described to obtain absorption spectra of aggregated species with a fairly good correction of the scattering component. The RLS spectrum, obtained using a common spectrofluorimeter, is correlated to the extinction spectrum of the same sample, allowing for an estimation of the scattering contribution to the total extinction spectrum. The method has been successfully applied both on real samples containing aggregated chromophores, such as porphyrins, chlorophyll a and gold colloids, and by simulating extinction spectra.

  18. Assignments of Lowest Triplet State in Ir Complexes by Observation of Phosphorescence Excitation Spectra at 6 K

    NASA Astrophysics Data System (ADS)

    Kodate, Satoshi; Suzuka, Isamu

    2006-01-01

    We tried the assignment of the origin of phosphorescent bands in Ir complexes. It is important to elucidate the luminescent mechanism in order to design organic light-emitting devices (OLEDs) besed on new materials. The Stokes shift between the phosphorescence and phosphorescence excitation spectra of Ir complexes such as fac-tris(2-phenylpyridine) iridium(III) [Ir(ppy)3], fac-tris(2-(2-thienyl)pyridine) iridium(III) [Ir(thpy)3], bis(2-phenylpyridine) iridium(III)benzo[h]quinoline [Ir(ppy)2bzq], fac-tris(benzo[h]quinoline) iridium(III) [Ir(bzq)3] and bis[(4,6-difluorophenyl)pyridinato](picolinato) iridium(III) [FIrpic] was measured in a solution and (phenyl)4Sn at 6 K. The amount of Stokes shift corresponds to the nature of the lowest triplet state. We discovered that the amount of Stokes shift clearly differs depending on whether the lowest triplet state of each Ir complex is triplet metal-to-ligand charge transfer (3MLCT) or 3π-π*. Namely, the case of 3MLCT shows a large shift, while the case of 3π-π* shows a small shift. We also present the resolved phosphorescence and phosphorescence excitation spectra of Ir complexes in (phenyl)4Sn. The sharp bands were assigned to the 3π-π* transition, and the broad bands were assigned to the 3MLCT state. The nature of the lowest triplet state is also discussed on the basis of resolved spectra.

  19. Reassignment of the Iron (3) Absorption Bands in the Spectra of Mars

    NASA Technical Reports Server (NTRS)

    Sherman, D. M.

    1985-01-01

    Absorption features in the near-infrared and visible region reflectance spectra of Mars have been assigned to specific Fe (3+) crystal-field and o(2-) yields Fe(3+) charge transfer transitions. Recently, near-ultraviolet absorption spectra of iron oxides were obtained and the energies of o(2-) yields Fe(3+) charge-transfer (LMCT) transitions were determined from accurate SCF-X # alpha-SW molecular orbital calculations on (FeO6)(9-) and (FeO4)(5-) clusters. Both the theoretical and experimental results, together with existing data in the literature, show that some of the previous Fe(3+) band assignments in the spectra of Mars need to be revised. The theory of Fe(3+) spectra in minerals is discussed and applied to the spectrum of Mars.

  20. C2D Spitzer-IRS spectra of disks around T Tauri stars. V. Spectral decomposition

    NASA Astrophysics Data System (ADS)

    Olofsson, J.; Augereau, J.-C.; van Dishoeck, E. F.; Merín, B.; Grosso, N.; Ménard, F.; Blake, G. A.; Monin, J.-L.

    2010-09-01

    Context. Dust particles evolve in size and lattice structure in protoplanetary disks, due to coagulation, fragmentation and crystallization, and are radially and vertically mixed in disks due to turbulent diffusion and wind/radiation pressure forces. Aims: This paper aims at determining the mineralogical composition and size distribution of the dust grains in planet forming regions of disks around a statistical sample of 58 T Tauri stars observed with Spitzer/IRS as part of the Cores to Disks (c2d) Legacy Program. Methods: We present a spectral decomposition model, named “B2C”, that reproduces the IRS spectra over the full spectral range (5-35 μm). The model assumes two dust populations: a warm component responsible for the 10 μm emission arising from the disk inner regions (≲1 AU) and a colder component responsible for the 20-30 μm emission, arising from more distant regions (≲10 AU). The fitting strategy relies on a random exploration of parameter space coupled with a Bayesian inference method. Results: We show evidence for a significant size distribution flattening in the atmospheres of disks compared to the typical MRN distribution, providing an explanation for the usual flat, boxy 10 μm feature profile generally observed in T Tauri star spectra. We reexamine the crystallinity paradox, observationally identified by Olofsson et al. (2009 , A&A, 507, 327), and we find a simultaneous enrichment of the crystallinity in both the warm and cold regions, while grain sizes in both components are uncorrelated. We show that flat disks tend to have larger grains than flared disk. Finally our modeling results do not show evidence for any correlations between the crystallinity and either the star spectral type, or the X-ray luminosity (for a subset of the sample). Conclusions: The size distribution flattening may suggests that grain coagulation is a slightly more effective process than fragmentation (helped by turbulent diffusion) in disk atmospheres, and that

  1. THE STRUCTURE OF THE ULTRAVIOLET ABSORPTION SPECTRA OF CERTAIN PROTEINS AND AMINO ACIDS

    PubMed Central

    Coulter, Calvin B.; Stone, Florence M.; Kabat, Elvin A.

    1936-01-01

    1. The absorption spectra of a number of proteins in the region 2500 to 3000 A. have been found to comprise from six to nine narrow bands. In consequence of variation in the relative intensity of these bands from protein to protein, the absorption curve has a characteristic configuration for each protein. 2. These bands correspond closely in position with the narrow bands which appear in the absorption spectra of tryptophan, tyrosin, and phenylalanine. Tryptophan and tyrosin each present three bands, phenylalanine shows nine. 3. The bands in the proteins are accordingly attributed to these amino acids. In the proteins the bands are displaced from the positions which they occupy in the uncombined amino acids, in most instances, by 10 to 35 A. toward longer wavelengths. 4. The absorption spectrum of Pneumococcus Type I antibody resembles that of normal pseudoglobulin but shows characteristic differences. PMID:19872958

  2. Theoretical analysis of electronic absorption spectra of vitamin B12 models

    NASA Astrophysics Data System (ADS)

    Andruniow, Tadeusz; Kozlowski, Pawel M.; Zgierski, Marek Z.

    2001-10-01

    Time-dependent density-functional theory (TD-DFT) is applied to analyze the electronic absorption spectra of vitamin B12. To accomplish this two model systems were considered: CN-[CoIII-corrin]-CN (dicyanocobinamide, DCC) and imidazole-[CoIII-corrin]-CN (cyanocobalamin, ImCC). For both models 30 lowest excited states were calculated together with transition dipole moments. When the results of TD-DFT calculations were directly compared with experiment it was found that the theoretical values systematically overestimate experimental data by approximately 0.5 eV. The uniform adjustment of the calculated transition energies allowed detailed analysis of electronic absorption spectra of vitamin B12 models. All absorption bands in spectral range 2.0-5.0 eV were readily assigned. In particular, TD-DFT calculations were able to explain the origin of the shift of the lowest absorption band caused by replacement of the-CN axial ligand by imidazole.

  3. Soft X-ray absorption excess in gamma-ray burst afterglow spectra: Absorption by turbulent ISM

    NASA Astrophysics Data System (ADS)

    Tanga, M.; Schady, P.; Gatto, A.; Greiner, J.; Krause, M. G. H.; Diehl, R.; Savaglio, S.; Walch, S.

    2016-10-01

    Two-thirds of long duration gamma-ray bursts (GRBs) show soft X-ray absorption in excess of the Milky Way. The column densities of metals inferred from UV and optical spectra differ from those derived from soft X-ray spectra, at times by an order of magnitude, with the latter being higher. The origin of the soft X-ray absorption excess observed in GRB X-ray afterglow spectra remains a heavily debated issue, which has resulted in numerous investigations on the effect of hot material both internal and external to the GRB host galaxy on our X-ray afterglow observations. Nevertheless, all models proposed so far have either only been able to account for a subset of our observations (i.e. at z> 2), or they have required fairly extreme conditions to be present within the absorbing material. In this paper, we investigate the absorption of the GRB afterglow by a collisionally ionised and turbulent interstellar medium (ISM). We find that a dense (3 cm-3) collisionally ionised ISM could produce UV/optical and soft X-ray absorbing column densities that differ by a factor of 10. However the UV/optical and soft X-ray absorbing column densities for such sightlines are 2-3 orders of magnitude lower in comparison to the GRB afterglow spectra. For those GRBs with a larger soft X-ray excess by up to an order of magnitude, the contribution in absorption from a turbulent ISM as considered here would ease the required conditions of additional absorbing components, such as the GRB circumburst medium and intergalactic medium.

  4. Theoretical study of absorption and fluorescence spectra of firefly luciferin in aqueous solutions.

    PubMed

    Hiyama, Miyabi; Akiyama, Hidefumi; Yamada, Kenta; Koga, Nobuaki

    2012-01-01

    The absorption and fluorescence spectra of firefly luciferin, which is an analog of oxyluciferin, are investigated by performing the density functional theory (DFT) calculations, especially focusing on the experimentally unassigned peaks. Time-dependent DFT calculations are performed for the excited states of firefly luciferin and its conjugate acids and bases. We find that (1) the peaks in the experimental absorption spectra correspond to the excited states of not only (6'O(-), 4COO(-)) and (6'OH, 4COO(-)), but also (6'OH, 4COOH) and (6'OH, 3H(+), 4COOH); (2) the peaks in the experimental fluorescence spectra correspond to the excited states of not only (6'O(-), 4COO(-)), but also (6'OH, 4COO(-)), (6'O(-), 4COOH), (6'OH, 4COOH) and (6'OH, 3H(+), 4COOH); (3) the unassigned peak near 400 nm in the experimental absorption spectra at pH 1 is assigned to the absorption from the equilibrium ground state to the first excited state of (6'OH, 3H(+), 4COOH); and (4) the unassigned peak at 610 nm in the experimental fluorescence spectra corresponds to the transition from the equilibrium first excited state to the ground state of (6'OH, 4COO(-)). PMID:22364397

  5. A Novel Acoustic Sensor Approach to Classify Seeds Based on Sound Absorption Spectra

    PubMed Central

    Gasso-Tortajada, Vicent; Ward, Alastair J.; Mansur, Hasib; Brøchner, Torben; Sørensen, Claus G.; Green, Ole

    2010-01-01

    A non-destructive and novel in situ acoustic sensor approach based on the sound absorption spectra was developed for identifying and classifying different seed types. The absorption coefficient spectra were determined by using the impedance tube measurement method. Subsequently, a multivariate statistical analysis, i.e., principal component analysis (PCA), was performed as a way to generate a classification of the seeds based on the soft independent modelling of class analogy (SIMCA) method. The results show that the sound absorption coefficient spectra of different seed types present characteristic patterns which are highly dependent on seed size and shape. In general, seed particle size and sphericity were inversely related with the absorption coefficient. PCA presented reliable grouping capabilities within the diverse seed types, since the 95% of the total spectral variance was described by the first two principal components. Furthermore, the SIMCA classification model based on the absorption spectra achieved optimal results as 100% of the evaluation samples were correctly classified. This study contains the initial structuring of an innovative method that will present new possibilities in agriculture and industry for classifying and determining physical properties of seeds and other materials. PMID:22163455

  6. Visible and Near-IR Reflectance Spectra of Mars Analogue Materials Under Arid Conditions for Interpretation of Martian Surface Mineralogy

    NASA Technical Reports Server (NTRS)

    Morris, R. V.; Graff, T. G.; Achilles, C. N.; Agresti, D. G.; Ming, D. W.; Golden, D. C.

    2011-01-01

    Visible and near-IR (VNIR) spectra from the hyper-spectral imagers MRO-CRISM and Mars Express OMEGA in martian orbit have signatures from Fe-bearing phases (e.g., olivine, pyroxene, and jarosite), H2O/OH-bearing phases (e.g., smectites and other phyllosilicates, sulfates, and high-SiO2 phases), and carbonate [e.g., 1-5]. Mineralogical assignments of martian spectral features are made on the basis of VNIR spectra acquired in the laboratory under appropriate environmental conditions on samples whose mineralogical composition is known. We report here additional results for our ongoing project [6] to acquire VNIR spectra under arid conditions.

  7. Search for CO absorption bands in IUE far-ultraviolet spectra of cool stars

    NASA Technical Reports Server (NTRS)

    Gessner, Susan E.; Carpenter, Kenneth G.; Robinson, Richard D.

    1994-01-01

    Observations of the red supergiant (M2 Iab) alpha Ori with the Goddard High Resolution Spectrograph (GHRS) on board the Hubble Space Telescope (HST) have provided an unambiguous detection of a far-ultraviolet (far-UV) chromospheric continuum on which are superposed strong molecular absorption bands. The absorption bands have been identified by Carpenter et al. (1994) with the fourth-positive A-X system of CO and are likely formed in the circumstellar shell. Comparison of these GHRS data with archival International Ultraviolet Explorer (IUE) spectra of alpha Ori indicates that both the continuum and the CO absorption features can be seen with IUE, especially if multiple IUE spectra, reduced with the post-1981 IUESIPS extraction procedure (i.e., with an oversampling slit), are carefully coadded to increase the signal to noise over that obtainable with a single spectrum. We therefore initiated a program, utilizing both new and archival IUE Short Wavelength Prime (SWP) spectra, to survey 15 cool, low-gravity stars, including alpha Ori, for the presence of these two new chromospheric and circumstellar shell diagnostics. We establish positive detections of far-UV stellar continua, well above estimated IUE in-order scattered light levels, in spectra of all of the program stars. However, well-defined CO absorption features are seen only in the alpha Ori spectra, even though spectra of most of the program stars have sufficient signal to noise to allow the dectection of features of comparable magnitude to the absorptions seen in alpha Ori. Clearly if CO is present in the circumstellar environments of any of these stars, it is at much lower column densities.

  8. Absorption spectra of wide-gap semiconductors in their transparency region

    NASA Astrophysics Data System (ADS)

    Imangholi, Babak; Hasselbeck, Michael P.; Sheik-Bahae, Mansoor

    2003-11-01

    The linear absorption spectra of GaP, TiO 2, ZnSe, and ZnS are measured in their transparency range using a two-color, excite-probe Z-scan. ZnS has the lowest absorption coefficient (˜10 -5 cm -1) in the wavelength range 840-900 nm, making it an excellent material for use as a luminescence extracting lens in semiconductor laser cooling experiments. Direct observation of two-photon absorption in ZnSe using only low power, continuous laser beams is also reported.

  9. Fluorescence, Absorption, and Excitation Spectra of Polycyclic Aromatic Hydrocarbons as a Tool for Quantitative Analysis

    ERIC Educational Resources Information Center

    Rivera-Figueroa, A. M.; Ramazan, K. A.; Finlayson-Pitts, B. J.

    2004-01-01

    A quantitative and qualitative study of the interplay between absorption, fluorescence, and excitation spectra of pollutants called polycyclic aromatic hydrocarbons (PAHs) is conducted. The study of five PAH displays the correlation of the above-mentioned properties along with the associated molecular changes.

  10. Absorption Band Modeling in Reflectance Spectra: Availability of the Modified Gaussian Model

    NASA Astrophysics Data System (ADS)

    Sunshine, J. M.; Pieters, C. M.; Pratt, S. F.; McNaron-Brown, K. S.

    1999-03-01

    The modified Gaussian model, a physically based description of absorption bands in spectra, has been updated to provide compatibility with most computer systems. These new versions, written in MATLAB and IDL, are available at the RELAB Website (www.planetary.brown.edu).

  11. Oxygen K-edge absorption spectra of small molecules in the gas phase

    SciTech Connect

    Yang, B.X.; Kirz, J.; Sham, T.K.

    1986-01-01

    The absorption spectra of O/sub 2/, CO, CO/sub 2/ and OCS have been recorded in a transmission mode in the energy region from 500 to 950 eV. Recent observation of EXAFS in these molecules is confirmed in this study. 7 refs., 3 figs.

  12. Absorption and Fluorescence Spectra of Poly(p-phenylenevinylene) (PPV) Oligomers: An ab Initio Simulation

    PubMed Central

    2014-01-01

    The absorption and fluorescence spectra of poly(p-phenylenevinylene) (PPV) oligomers with up to seven repeat units were theoretically investigated using the algebraic diagrammatic construction method to second order, ADC(2), combined with the resolution-of-the-identity (RI) approach. The ground and first excited state geometries of the oligomers were fully optimized. Vertical excitation energies and oscillator strengths of the first four transitions were computed. The vibrational broadening of the absorption and fluorescence spectra was studied using a semiclassical nuclear ensemble method. After correcting for basis set and solvent effects, we achieved a balanced description of the absorption and fluorescence spectra by means of the ADC(2) approach. This fact is documented by the computed Stokes shift along the PPV series, which is in good agreement with the experimental values. The experimentally observed band width of the UV absorption and fluorescence spectra is well reproduced by the present simulations showing that the nuclear ensemble generated should be well suitable for consecutive surface hopping dynamics simulations. PMID:25415930

  13. A first principle study for the adsorption and absorption of carbon atom and the CO dissociation on Ir(100) surface.

    PubMed

    Erikat, I A; Hamad, B A

    2013-11-01

    We employ density functional theory to examine the adsorption and absorption of carbon atom as well as the dissociation of carbon monoxide on Ir(100) surface. We find that carbon atoms bind strongly with Ir(100) surface and prefer the high coordination hollow site for all coverages. In the case of 0.75 ML coverage of carbon, we obtain a bridging metal structure due to the balance between Ir-C and Ir-Ir interactions. In the subsurface region, the carbon atom prefers the octahedral site of Ir(100) surface. We find large diffusion barrier for carbon atom into Ir(100) surface (2.70 eV) due to the strong bonding between carbon atom and Ir(100) surface, whereas we find a very small segregation barrier (0.22 eV) from subsurface to the surface. The minimum energy path and energy barrier for the dissociation of CO on Ir(100) surface are obtained by using climbing image nudge elastic band. The energy barrier of CO dissociation on Ir(100) surface is found to be 3.01 eV, which is appreciably larger than the association energy (1.61 eV) of this molecule.

  14. Absolute calibration and atmospheric versus mineralogic origin of absorption features in 2.0 to 2.5 micron Mars spectra obtained during 1993

    NASA Technical Reports Server (NTRS)

    Bell, James F., III; Pollack, James B.; Geballe, Thomas R.; Cruikshank, Dale P.; Freedman, Richard

    1994-01-01

    We obtained new high resolution reflectance spectra of Mars during the 1993 opposition from Mauna Kea Observatory using the UKIRT CGS4 spectrometer. Fifty spectra of 1600-2000 km surface regions and a number of standard star spectra were obtained in the 2.04 to 2.44 micron wavelength region on 4 February 1993 UT. Near-simultaneous observations of bright standard stars were used to perform terrestrial atmospheric corrections and an absolute flux calibration. Using the known magnitude of the stars and assuming blackbody continuum behavior, the flux from Mars could be derived. A radiative transfer model and the HITRAN spectral line data base were used to compute atmospheric transmission spectra for Mars and the Earth in order to simulate the contributions of these atmospheres to our observed data. Also, we examined the ATMOS solar spectrum in the near-IR to try to identify absorption features in the spectrum of the Sun that could be misinterpreted as Mars features. Eleven absorption features were detected in our Mars spectra. Our data provide no conclusive identification of the mineralogy responsible for the absorption features we detected. However, examination of terrestrial spectral libraries and previous high spectral resolution mineral studies indicates that the most likely origin of these features is either CO3(sup 2-), HCO3(-), or HSO4(-) anions in framework silicates or possibly (Fe, Mg)-OH bonds in sheet silicates.

  15. Calibration and analysis of spatially resolved x-ray absorption spectra from a nonuniform plasma

    SciTech Connect

    Knapp, P. F.; Hansen, S. B.; Pikuz, S. A.; Shelkovenko, T. A.; Hammer, D. A.

    2012-07-15

    We report here the calibration and analysis techniques used to obtain spatially resolved density and temperature measurements of a pair of imploding aluminum wires from x-ray absorption spectra. A step wedge is used to measure backlighter fluence at the film, allowing transmission through the sample to be measured with an accuracy of {+-}14% or better. A genetic algorithm is used to search the allowed plasma parameter space and fit synthetic spectra with 20 {mu}m spatial resolution to the measured spectra, taking into account that the object plasma nonuniformity must be physically reasonable. The inferred plasma conditions must be allowed to vary along the absorption path in order to obtain a fit to the spectral data. The temperature is estimated to be accurate to within {+-}25% and the density to within a factor of two. This information is used to construct two-dimensional maps of the density and temperature of the object plasma.

  16. Local environment of metal ions in phthalocyanines: K-edge X-ray absorption spectra.

    PubMed

    Rossi, G; d'Acapito, F; Amidani, L; Boscherini, F; Pedio, M

    2016-09-14

    We report a detailed study of the K-edge X-ray absorption spectra of four transition metal phthalocyanines (MPc, M = Fe, Co, Cu and Zn). We identify the important single and multiple scattering contributions to the spectra in the extended energy range and provide a robust treatment of thermal damping; thus, a generally applicable model for the interpretation of X-ray absorption fine structure spectra is proposed. Consistent variations of bond lengths and Debye Waller factors are found as a function of atomic number of the metal ion, indicating a variation of the metal-ligand bond strength which correlates with the spatial arrangement and occupation of molecular orbitals. We also provide an interpretation of the near edge spectral features in the framework of a full potential real space multiple scattering approach and provide a connection to the local electronic structure. PMID:27510989

  17. Calculation of Electronic Absorption Spectra with Account of Thermal Geometry Fluctuations

    NASA Astrophysics Data System (ADS)

    Guzha, Maris V.; Svitenkov, Andrew I.

    2016-08-01

    An influence of thermal fluctuations of molecule's geometry on calculated electronic-absorption Vis/Uv spectra is considered. Paper presents the quantum chemical modeling of the electronic-absorption spectra for the collection of graphene samples (44, 56, 60, 68 atoms). The calculations were performed by time dependent density functional theory (TDDFT) method in combination with molecular dynamics (MD) simulation at T=300 K. The noticeable changing of spectra relative to single point TDDFT calculation was discovered for two of four structures. We associate achieved results with perturbation of hydrogen and carbon atoms on the edges of the structures. We believe that suggested methodology will be useful in application engineering researches of novel molecules and molecular complexes.

  18. Local environment of metal ions in phthalocyanines: K-edge X-ray absorption spectra.

    PubMed

    Rossi, G; d'Acapito, F; Amidani, L; Boscherini, F; Pedio, M

    2016-09-14

    We report a detailed study of the K-edge X-ray absorption spectra of four transition metal phthalocyanines (MPc, M = Fe, Co, Cu and Zn). We identify the important single and multiple scattering contributions to the spectra in the extended energy range and provide a robust treatment of thermal damping; thus, a generally applicable model for the interpretation of X-ray absorption fine structure spectra is proposed. Consistent variations of bond lengths and Debye Waller factors are found as a function of atomic number of the metal ion, indicating a variation of the metal-ligand bond strength which correlates with the spatial arrangement and occupation of molecular orbitals. We also provide an interpretation of the near edge spectral features in the framework of a full potential real space multiple scattering approach and provide a connection to the local electronic structure.

  19. Possible spinel absorption bands in S-asteroid visible reflectance spectra

    NASA Technical Reports Server (NTRS)

    Hiroi, T.; Vilas, F.; Sunshine, J. M.

    1994-01-01

    Minor absorption bands in the 0.55 to 0.7 micron wavelength range of reflectance spectra of 10 S asteroids have been found and compared with those of spinel-group minerals using the modified Gaussian model. Most of these S asteroids are consistently shown to have two absorption bands around 0.6 and 0.67 micron. Of the spinel-group minerals examined in this study, the 0.6 and 0.67 micron bands are most consistent with those seen in chromite. Recently, the existence of spinels has also been detected from the absorption-band features around 1 and 2 micron of two S-asteroid reflectance spectra, and chromite has been found in a primitive achondrite as its major phase. These new findings suggest a possible common existence of spinel-group minerals in the solar system.

  20. Radiatively driven winds for different power law spectra. [for explaining narrow and broad quasar absorption lines

    NASA Technical Reports Server (NTRS)

    Beltrametti, M.

    1980-01-01

    The analytic solutions for radiatively driven winds are given for the case in which the winds are driven by absorption of line and continuum radiation. The wind solutions are analytically estimated for different parameters of the central source and for different power law spectra. For flat spectra, three sonic points can exist; it is shown, however, that only one of these sonic points is physically realistic. Parameters of the central source are given which generate winds of further interest for explaining the narrow and broad absorption lines in quasars. For the quasar model presented here, winds which could give rise to the narrow absorption lines are generated by central sources with parameters which are not realistic for quasars.

  1. Absorption spectra of PTCDI: A combined UV-Vis and TD-DFT study

    NASA Astrophysics Data System (ADS)

    Oltean, Mircea; Calborean, Adrian; Mile, George; Vidrighin, Mihai; Iosin, Monica; Leopold, Loredana; Maniu, Dana; Leopold, Nicolae; Chiş, Vasile

    2012-11-01

    Absorption spectra of PTCDI (3,4,9,10-perylene-tetracarboxylic-diimide) have been investigated in chloroform, N,N'-dimethylformamide (DMF) and dimethylsulfoxide (DMSO). While no signature of assembled PTCDI molecules is observed in chloroform solution, distinct bands assigned to their aggregation have been identified in DMF and DMSO solutions. PTCDI monomers show very similar absorption patterns in chloroform and DMSO solutions. Experimental data, including the vibronic structure of the absorption spectra were explained based on the Franck-Condon approximation and quantum chemical results obtained at PBE0-DCP/6-31+G(d,p) level of theory. Geometry optimization of the first excited state leads to a nice agreement between the calculated adiabatic transition energies and experimental data.

  2. Non-Destructive and Discriminating Identification of Illegal Drugs by Transient Absorption Spectroscopy in the Visible and Near-IR Wavelength Range

    NASA Astrophysics Data System (ADS)

    Sato, Chie; Furube, Akihiro; Katoh, Ryuzi; Nonaka, Hidehiko; Inoue, Hiroyuki

    2008-11-01

    We have tested the possibility of identifying illegal drugs by means of nanosecond transient absorption spectroscopy with a 10-ns UV-laser pulse for the excitation light and visible-to-near-IR light for the probe light. We measured the transient absorption spectra of acetonitrile solutions of d-methamphetamine, dl-3,4-methylenedioxymethamphetamine hydrochloride (MDMA), and dl-N-methyl-1-(1,3-benzodioxol-5-yl)-2-butanamine hydrochloride (MBDB), which are illegal drugs widely consumed in Japan. Transient absorption signals of these drugs were observed between 400 and 950 nm, a range in which they are transparent in the ground state. By analyzing the spectra in terms of exponential and Gaussian functions, we could identify the drugs and discriminate them from chemical substances having similar structures. We propose that transient absorption spectroscopy will be a useful, non-destructive method of inspecting for illegal drugs, especially when they are dissolved in liquids. Such a method may even be used for drugs packed in opaque materials if it is further extended to utilize intense femtosecond laser pulses.

  3. Reflectance Spectra of Synthetic Ortho- and Clinoenstatite in the UV, VIS, and IR for Comparison with Fe-poor Asteroids

    NASA Astrophysics Data System (ADS)

    Markus, Kathrin; Arnold, Gabriele; Hiesinger, Harald; Rohrbach, Arno

    2016-04-01

    aubrites and enstatite chondrites. Clinoenstatite in enstatite chondrites and aubrites formed presumably by crystallization from a melt and subsequent quenching and mechanical deformation (brecciation) [5]. We synthesized powders of orthoenstatite and clinoenstatite. Following the synthesis we used XRPD to discriminate between the polymorphs. The grain sizes of the samples were determined using SEM pictures of the samples and are comparable to the <25 μm sieving fractions of our terrestrial samples with some additional larger grains. The orthoenstatite sample is slightly coarser than the clinoenstatite sample. We collected reflectance spectra of both enstatite samples ranging from 0.25 μm to 17 μm using the Vertex 70v and Vertex80v at IR/IS facility at the Institut für Planetologie at the University Münster and the Institute of Planetary Research at DLR in Berlin. In the VIS and NIR both samples show weak absorption bands. The clinoenstatite shows absorption bands at 1.75 μm and 0.90 μm. Both absorptions bands can be attributed to minor amounts of Fe2+ in M2 positions of the clinoenstatite. The orthopyroxene shows several weaker absorptions bands between 0.4 μm and 1 μm which are due to Fe3+ and possibly Ti. Both samples show a steep red slope in the UV while spectral slopes in the VIS and NIR are almost neutral with only a slightly reddish slope in the VIS. [1] Burns (1993) Mineralogical Applications of Crystal Field Theory, 2nd ed. [2] Klima et al. (2007) Met. Planet. Sci., 42, 235-253. [3] Izenberg et al. (2014) Icarus, 228, 364-374. [4] Keil (2010) Chem. Erde, 70, 295-317. [5] Mason (1968) Lithos, 1, 1-11. [6] Markus et al. (2014) EGU 2014, #13341. [7] Coradini et al. (2011) Science, 334, 492-494. [8] Klima et al. (2011) Met. Planet. Sci., 46, 379-395. [9] Lee and Heuer (1987) J. Am. Ceram. Soc., 70, 349-360.

  4. Collisional Induced Absorption (CIA) bands measured in the IR spectral range .

    NASA Astrophysics Data System (ADS)

    Stefani, S.; Piccioni, G.; Snels, M.; Adriani, A.; Grassi, D.

    In this work we present two experimental setup able to characterize the optical properties of gases, in particular CO_2 and H_2, at typically planetary conditions. The apparatus consists of a Fourier Transform InfraRed (FT-IT) interferometer able to work in a wide spectral range, from 350 to 25000 cm-1 (0.4 to 29 mu m ) with a relatively high spectral resolution, from 10 to 0.07 cm-1. Two dedicated gas cells have been integrated with the FT-IR. The first, called High Pressure High Temperature (HP-HT), can support pressures up to 300 bar, temperatures up to 300oC and is characterized by an optical path of 2 cm. The second one, a Multi Pass (MP) absorption gas cell, is designed to have a variable optical path, from 2.5 to 30 m, can be heated up to 200o and operate at pressures up to 10 bar. In this paper, measurements of Collision-Induced Absorption (CIA) bands in carbon dioxide and hydrogen recorded in the InfraRed spectral range will be presented. In principle, linear symmetric molecules such as CO_2 and H_2 possess no dipole moment, but, even when the pressure is only a few bar, we have observed the Collisional Induced Absorption (CIA) bands. This absorption results from a short-time collisional interaction between molecules. The band integrated intensity shows a quadratic dependence versus density opposed to the absorption by isolated molecules, which follows Beer's law \\citep{Beer's}. This behaviour suggests an absorption by pairs rather than by individual molecules. The bands integrated intensities show a linear dependence vs square density according to \\citep {CIA Shape} and \\citep{CIA posi}. For what concerns the H_2 CIA bands, a preliminary comparison between simulated data obtained with the model described in \\citep{CIA H2}and measured, shows a good agreement. These processes are very relevant in the dense atmospheres of planets, such as those of Venus and Jupiter and also in extrasolar planets. A detailed knowledge of these contributions is very

  5. A new tridentate Schiff base Cu(II) complex: Synthesis, experimental and theoretical studies on its crystal structure, FT-IR and UV-Visible spectra

    NASA Astrophysics Data System (ADS)

    Saheb, Vahid; Sheikhshoaie, Iran; Setoodeh, Nasim; Rudbari, Hadi Amiri; Bruno, Giuseppe

    2013-06-01

    A new Cu(II) complex [Cu(L)(NCS)] has been synthesized, using 1-(N-salicylideneimino)-2-(N,N-methyl)-aminoethane as tridentate ONN donor Schiff base ligand (HL). The dark green crystals of the compound are used for single-crystal X-ray analysis and measuring Fourier Transform Infrared (FT-IR) and UV-Visible spectra. Electronic structure calculations at the B3LYP and MP2 levels of theory are performed to optimize the molecular geometry and to calculate the UV-Visible and FT-IR spectra of the compound. Vibrational assignments and analysis of the fundamental modes of the compound are performed. Time-dependent density functional theory (TD-DFT) method is used to calculate the electronic transitions of the complex. A scaling factor of 1.015 is obtained for vibrational frequencies computed at the B3LYP level using basis sets 6-311G(d,p). It is found that solvent has a profound effect on the electronic absorption spectrum. The UV-Visible spectrum of the complex recorded in DMSO and DMF solution can be correctly predicted by a model in which DMSO and DMF molecules are coordinated to the central Cu atom via their oxygen atoms.

  6. Temperature and pH effects on myoglobin optical absorption spectra

    NASA Astrophysics Data System (ADS)

    Ciesielski, Wayne A.; Arakaki, Lorilee S. L.; Schenkman, Kenneth A.

    2005-03-01

    Myoglobin is an important intracellular oxygen transport molecule in muscle. Oxygen binding to myoglobin can be determined spectroscopically due to differences in absorption of oxymyoglobin and deoxymyoglobin. Myoglobin oxygenation can be used as a measure of intracellular oxygen tension in muscle. We sought to determine the effects of differences in temperature and pH on myoglobin absorption spectra in the near-infrared spectral region. Transmission spectra were taken of pure solutions of oxymyoglobin and deoxymyoglobin at 10°, 20°, 30°, and 40°C at pH values of 6.0, 7.0, and 8.0 (n=4). In second derivative spectra at 40°C, the deoxymyoglobin peak near 760 nm was shifted by 0.9-1.2 nm toward longer wavelengths relative to 10°C at constant pH. Differences in pH did not result in statistically significant shifts in this peak at constant temperature. Estimations of myoglobin saturation from myoglobin spectra with intermediate saturations were obtained by least squares (LS) and partial least squares (PLS) analyses. Both algorithms estimate myoglobin saturation with small root mean square errors (<1e-6) when component spectra and calibration set spectra are at the same temperature as test spectra (n=100). However, when spectra at 20°C or 40°C were used as component spectra in LS with test spectra at 30°C (all at pH 7.0), errors were 0.8% and 1.4%, respectively. PLS analysis of 30°C test spectra using 20°C or 40°C calibration set spectra yielded errors of 1.6% and 1.5%, respectively. When the PLS analysis is endpoint corrected, these errors become vanishingly small. These results demonstrate that peak shifts due to temperature are potential sources of error if calibration and test spectra differ by 10°C. These errors can be minimized by appropriate spectral analytic methods.

  7. X-ray Absorption Spectroscopy Study of the Effect of Rh doping in Sr2IrO4

    PubMed Central

    Sohn, C. H.; Cho, Deok-Yong; Kuo, C.-T.; Sandilands, L. J.; Qi, T. F.; Cao, G.; Noh, T. W.

    2016-01-01

    We investigate the effect of Rh doping in Sr2IrO4 using X-ray absorption spectroscopy (XAS). We observed appearance of new electron-addition states with increasing Rh concentration (x in Sr2Ir1−xRhxO4) in accordance with the concept of hole doping. The intensity of the hole-induced state is however weak, suggesting weakness of charge transfer (CT) effect and Mott insulating ground states. Also, Ir Jeff = 1/2 upper Hubbard band shifts to lower energy as x increases up to x = 0.23. Combined with optical spectroscopy, these results suggest a hybridisation-related mechanism, in which Rh doping can weaken the (Ir Jeff = 1/2)–(O 2p) orbital hybridisation in the in-planar Rh-O-Ir bond networks. PMID:27025538

  8. Distortions in IR spectra related to the registration conditions: I. The influence of the reflection from interfaces

    NASA Astrophysics Data System (ADS)

    Murzin, P. D.; Novikov, R. G.; Tsyganenko, A. A.

    2016-07-01

    We show that the contour of an absorption band of a thin layer of a liquid or a film of a solid compound deposited onto a substrate can be strongly distorted as a result of the reflection from the specimen surface or the interface with the substrate if the refractive index of the compound under study changes sharply in the range of the absorption band. We consider the theory of this phenomenon and ways of taking it into account in studies of the absorption spectra of films, liquids, and adsorbed molecules.

  9. Modeling absorption spectra for detection of the combustion products of jet engines by laser remote sensing.

    PubMed

    Voitsekhovskaya, Olga K; Kashirskii, Danila E; Egorov, Oleg V; Shefer, Olga V

    2016-05-10

    The absorption spectra of exhaust gases (H2O, CO, CO2, NO, NO2, and SO2) and aerosol (soot and Al2O3) particles were modeled at different temperatures for the first time and suitable spectral ranges were determined for conducting laser remote sensing of the combustion products of jet engines. The calculations were conducted on the basis of experimental concentrations of the substances and the sizes of the aerosol particles. The temperature and geometric parameters of jet engine exhausts were also taken from the literature. The absorption spectra were obtained via the line-by-line method, making use of the spectral line parameters from the authors' own high-temperature databases (for NO2 and SO2 gases) and the HITEMP 2010 database, and taking into account atmospheric transmission. Finally, the theoretical absorption spectra of the exhaust gases were plotted at temperatures of 400, 700, and 1000 K, and the impact of aerosol particles on the total exhaust spectra was estimated in spectral ranges suitable for remote sensing applications. PMID:27168298

  10. THERMAL ABSORPTION AS THE CAUSE OF GIGAHERTZ-PEAKED SPECTRA IN PULSARS AND MAGNETARS

    SciTech Connect

    Lewandowski, Wojciech; Rożko, Karolina; Kijak, Jarosław; Melikidze, George I.

    2015-07-20

    We present a model that explains the observed deviation of the spectra of some pulsars and magnetars from the power-law spectra that are seen in the bulk of the pulsar population. Our model is based on the assumption that the observed variety of pulsar spectra can be naturally explained by the thermal free–free absorption that takes place in the surroundings of the pulsars. In this context, the variety of the pulsar spectra can be explained according to the shape, density, and temperature of the absorbing media and the optical path of the line of sight across it. We have put specific emphasis on the case of the radio magnetar SGR J1745–2900 (also known as the Sgr A* magnetar), modeling the rapid variations of the pulsar spectrum after the outburst of 2013 April as due to the free–free absorption of the radio emission in the electron material ejected during the magnetar outburst. The ejecta expands with time and consequently the absorption rate decreases and the shape of the spectrum changes in such a way that the peak frequency shifts toward the lower radio frequencies. In the hypothesis of an absorbing medium, we also discuss the similarity between the spectral behavior of the binary pulsar B1259–63 and the spectral peculiarities of isolated pulsars.

  11. C IV Broad Absorption Line Variability in QSO spectra from SDSS I-III Surveys

    NASA Astrophysics Data System (ADS)

    De Cicco, D.; Brandt, W. N.; Paolillo, M.; Grier, C. J.

    2016-08-01

    We present the results of our study of C IV broad absorption line (BAL) variability in the spectra of more than 1500 QSO's from several SDSS I-III surveys. Absorption lines in QSO spectra are due to outflowing winds which originate from the accretion disk, at a distance on the order of 1/100 - 1/10 pc from the central super-massive black hole (SMBH). Winds trigger the accretion mechanism onto the SMBH removing angular momentum from the disk and, since they evacuate gas from the host galaxy, they are believed to play a fundamental role in galaxy evolution. Absorption lines can be classified on the basis of their width and of the observed transitions, and their equivalent width can change on timescales from months to years, due to variations in the covering factor and/or in the ionization level. We analyzed the largest sample ever used for such kind of studies. We find that the fraction of disappearing BALs is three times larger than the one found in previous works. Strong evidence is found for a coordinated variability in spectra with multiple BAL troughs which may be interpreted in terms of disk-wind rotation, and/or variations in the physical status of the shielding gas. We also find that, in spectra with multiple BAL troughs, the disappearing ones are generally those with the highest central velocity.

  12. Modeling absorption spectra for detection of the combustion products of jet engines by laser remote sensing.

    PubMed

    Voitsekhovskaya, Olga K; Kashirskii, Danila E; Egorov, Oleg V; Shefer, Olga V

    2016-05-10

    The absorption spectra of exhaust gases (H2O, CO, CO2, NO, NO2, and SO2) and aerosol (soot and Al2O3) particles were modeled at different temperatures for the first time and suitable spectral ranges were determined for conducting laser remote sensing of the combustion products of jet engines. The calculations were conducted on the basis of experimental concentrations of the substances and the sizes of the aerosol particles. The temperature and geometric parameters of jet engine exhausts were also taken from the literature. The absorption spectra were obtained via the line-by-line method, making use of the spectral line parameters from the authors' own high-temperature databases (for NO2 and SO2 gases) and the HITEMP 2010 database, and taking into account atmospheric transmission. Finally, the theoretical absorption spectra of the exhaust gases were plotted at temperatures of 400, 700, and 1000 K, and the impact of aerosol particles on the total exhaust spectra was estimated in spectral ranges suitable for remote sensing applications.

  13. Detection of significant differences between absorption spectra of neutral helium and low temperature photoionized helium plasmas

    SciTech Connect

    Bartnik, A.; Wachulak, P.; Fiedorowicz, H.; Fok, T.; Jarocki, R.; Szczurek, M.

    2013-11-15

    In this work, spectral investigations of photoionized He plasmas were performed. The photoionized plasmas were created by irradiation of helium stream, with intense pulses from laser-plasma extreme ultraviolet (EUV) source. The EUV source was based on a double-stream Xe/Ne gas-puff target irradiated with 10 ns/10 J Nd:YAG laser pulses. The most intense emission from the source spanned a relatively narrow spectral region below 20 nm, however, spectrally integrated intensity at longer wavelengths was also significant. The EUV radiation was focused onto a gas stream, injected into a vacuum chamber synchronously with the EUV pulse. The long-wavelength part of the EUV radiation was used for backlighting of the photoionized plasmas to obtain absorption spectra. Both emission and absorption spectra in the EUV range were investigated. Significant differences between absorption spectra acquired for neutral helium and low temperature photoionized plasmas were demonstrated for the first time. Strong increase of intensities and spectral widths of absorption lines, together with a red shift of the K-edge, was shown.

  14. Detection of significant differences between absorption spectra of neutral helium and low temperature photoionized helium plasmas

    NASA Astrophysics Data System (ADS)

    Bartnik, A.; Wachulak, P.; Fiedorowicz, H.; Fok, T.; Jarocki, R.; Szczurek, M.

    2013-11-01

    In this work, spectral investigations of photoionized He plasmas were performed. The photoionized plasmas were created by irradiation of helium stream, with intense pulses from laser-plasma extreme ultraviolet (EUV) source. The EUV source was based on a double-stream Xe/Ne gas-puff target irradiated with 10 ns/10 J Nd:YAG laser pulses. The most intense emission from the source spanned a relatively narrow spectral region below 20 nm, however, spectrally integrated intensity at longer wavelengths was also significant. The EUV radiation was focused onto a gas stream, injected into a vacuum chamber synchronously with the EUV pulse. The long-wavelength part of the EUV radiation was used for backlighting of the photoionized plasmas to obtain absorption spectra. Both emission and absorption spectra in the EUV range were investigated. Significant differences between absorption spectra acquired for neutral helium and low temperature photoionized plasmas were demonstrated for the first time. Strong increase of intensities and spectral widths of absorption lines, together with a red shift of the K-edge, was shown.

  15. Spectroscopic (FT-IR, FT-Raman, UV absorption, 1H and 13C NMR) and theoretical (in B3LYP/6-311++G** level) studies on alkali metal salts of caffeic acid

    NASA Astrophysics Data System (ADS)

    Świsłocka, Renata

    The effect of some metals on the electronic system of benzoic and nicotinic acids has recently been investigated by IR, Raman and UV spectroscopy [1-3]. Benzoic and nicotinic acids are regarded model systems representing a wide group of aromatic ligands which are incorporated into enzymes. In this work the FT-IR (in solid state and in solution), FT-Raman, UV absorption and 1H and 13C NMR spectra of caffeic acid (3,4-dihydroxycinnamic acid) and its salts with lithium, sodium, potassium, rubidium and caesium were registered, assigned and analyzed. The effect of alkali metals on the electronic system of ligands was discussed. Studies of differences in the number and position of bands from the IR, Raman, UV absorption spectra and chemical shifts from NMR spectra allowed to conclude on the distribution of electronic charge in the molecules, the delocalization energy of π electrons and the reactivity of ligands in metal complexes. Optimized geometrical structures of studied compounds were calculated by B3LYP method using 6-311++G** basis set. Bond lengths, angles and dipole moments for the optimized structures of caffeic acid and lithium, sodium, potassium caffeinates were also calculated. The theoretical wavenumbers and intensities of IR spectra were obtained. The calculated parameters were compared to the experimental characteristics of investigated compounds. Microbial activity of studied compounds was tested against Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus and Proteus vulgaris.

  16. Interpretation of the absorption and circular dichroic spectra of oriented purple membrane films.

    PubMed Central

    Muccio, D D; Cassim, J Y

    1979-01-01

    The absorption and circular dichroic (CD) spectra of purple membrane films in which the plane of the membranes is oriented perpendicular to the incident beam are compared with the solution spectra. This enables one to relate structural features of the purple membrane to a coordinate system as defined by a normal to the membrane plane and two mutually perpendicular in-plane axes. The film and solution absorption spectra were similar except for a relative depression in the 200 - 225-nm region of the film spectrum. However, the CD spectra showed significant differences in the visible region, where the biphasic band in the solution spectrum was replaced by a single positive band at 555 nm in the film spectrum and in the far ultraviolet region, where the 208-nm band was deleted from the film spectra of the native and regenerated membranes. Moreover, a small shoulder occurred at 208 nm in the film spectrum of the bleached membrane. The near ultraviolet spectra also showed differences, whereas the 317-nm band remained essentially the same for both spectra. Based on excitonic interpretations of the visible and far ultraviolet spectra the following conclusions were reached: (a) a relatively strong in-plane monomeric interaction occurs between te retinyl chromophore and apoprotein; (b) the helical axes of the native and regenerated membrane proteins are oriented primarily normal to the membrane plane; and (c) the helical axes of the bleached membrane proteins are tilted more in-plane than the axes of the native or regenerated membrane. Additional conclusions were that an interaction occurs between an in-plane magnetic dipole moment of the retinyl chromophore and probably an in-plane electric dipole moment of a nearby aromatic amino acid(s), and that although the membrane is anisotropic with respect to coupling between electric and magnetic moments of the aromatic amino acids, the transition dipole moments of the aromatic amino acids are not preferentially oriented in either

  17. S0 → Sn and S1 → Sn absorption spectra of thio-distyrylbenzenes

    NASA Astrophysics Data System (ADS)

    Baraldi, Ivan; Ginocchietti, Gabriella; Mazzucato, Ugo; Spalletti, Anna

    2007-08-01

    The molecular structures and the S0 → Sn and S1 → Sn absorption spectra of 1,4-distyrylbenzene and four thio-analogues, where the side phenyl rings are replaced by 2'-thienyl or 3'-thienyl groups and the central benzene ring is replaced by a 2,5-disubstituted thiophene ring, have been investigated by a combined theoretical and experimental approach. The rotational isomerism of these flexible molecules has been analyzed by ab initio quantum chemistry methodologies. The S0 → Sn one-photon absorption spectra and the S1 → Sn transient spectra have been calculated using the CS INDO S-CI and SDT-CI procedures. The calculations on conformational isomers indicate that the stable molecular structures are those where the quasi-single bonds of the vinylene groups have almost planar s-trans configuration. In the 1,4-compounds, there may be an equilibrium between two molecular forms of C2h and C2v symmetry in the model of planar conformations. As concerns the UV-vis absorption spectra, the importance of the cis band, as probe to investigate the molecular structure of the 2,5-compounds, has been pointed out, and the presence of an equilibrium between two rotamers in the compound bearing side 3'-thienyl groups has been confirmed. The S1 → Sn absorption spectra are interpretable only with configuration interaction calculations including the multiple excited configurations. In this respect, the role played by the H2 → L2 double excitation has been emphasized.

  18. Plant phenolics and absorption features in vegetation reflectance spectra near 1.66 μm

    NASA Astrophysics Data System (ADS)

    Kokaly, Raymond F.; Skidmore, Andrew K.

    2015-12-01

    Past laboratory and field studies have quantified phenolic substances in vegetative matter from reflectance measurements for understanding plant response to herbivores and insect predation. Past remote sensing studies on phenolics have evaluated crop quality and vegetation patterns caused by bedrock geology and associated variations in soil geochemistry. We examined spectra of pure phenolic compounds, common plant biochemical constituents, dry leaves, fresh leaves, and plant canopies for direct evidence of absorption features attributable to plant phenolics. Using spectral feature analysis with continuum removal, we observed that a narrow feature at 1.66 μm is persistent in spectra of manzanita, sumac, red maple, sugar maple, tea, and other species. This feature was consistent with absorption caused by aromatic Csbnd H bonds in the chemical structure of phenolic compounds and non-hydroxylated aromatics. Because of overlapping absorption by water, the feature was weaker in fresh leaf and canopy spectra compared to dry leaf measurements. Simple linear regressions of feature depth and feature area with polyphenol concentration in tea resulted in high correlations and low errors (% phenol by dry weight) at the dry leaf (r2 = 0.95, RMSE = 1.0%, n = 56), fresh leaf (r2 = 0.79, RMSE = 2.1%, n = 56), and canopy (r2 = 0.78, RMSE = 1.0%, n = 13) levels of measurement. Spectra of leaves, needles, and canopies of big sagebrush and evergreens exhibited a weak absorption feature centered near 1.63 μm, short ward of the phenolic compounds, possibly consistent with terpenes. This study demonstrates that subtle variation in vegetation spectra in the shortwave infrared can directly indicate biochemical constituents and be used to quantify them. Phenolics are of lesser abundance compared to the major plant constituents but, nonetheless, have important plant functions and ecological significance. Additional research is needed to advance our understanding of the spectral influences

  19. PM3 semi-empirical IR spectra simulations for metal complexes of schiff bases of sulfa drugs

    NASA Astrophysics Data System (ADS)

    Topacli, C.; Topacli, A.

    2003-06-01

    The molecular structures and infrared spectra of Co, Ni, Cu and Zn complexes of two schiff base ligands, viz N-( o-vanillinidene)sulfanilamide ( oVSaH) and N-( o-vanillinidene)sulfamerazine ( oVSmrzH) are studied in detail by PM3 method. It has been shown that the proposed structures for the compounds derived from microanalytical, magnetic and various spectral data were consistent with the IR spectra simulated by PM3 method. Coordination effects on ν(CN) and ν(C-O) modes in the schiff base ligands are in close agreement with the observed results.

  20. Born Oppenheimer Molecular Dynamics calculation of the νO-H IR spectra for acetic acid cyclic dimers

    NASA Astrophysics Data System (ADS)

    El Amine Benmalti, Mohamed; Krallafa, Abdelghani; Gaigeot, Marie-Pierre

    2015-01-01

    Both ab initio molecular dynamics simulations based on the Born-Oppenheimer approach calculations and a quantum theoretical model are used in order to study the IR spectrum of the acetic acid dimer in the gas phase. The theoretical model is taking into account the strong anharmonic coupling, Davydov coupling, multiple Fermi resonances between the first harmonics of some bending modes and the first excited state of the symmetric combination of the two vO-H modes and the quantum direct and indirect relaxation. The IR spectra obtained from DFT-based molecular dynamics is compared with our theoretical lineshape and with experiment. Note that in a previous work we have shown that our approach reproduces satisfactorily the main futures of the IR experimental lineshapes of the acetic acid dimer [Mohamed el Amine Benmalti, Paul Blaise, H. T. Flakus, Olivier Henri-Rousseau, Chem Phys, 320(2006) 267-274.].

  1. Long-distance inter-hydrogen bond coupling effects in the polarized IR spectra of succinic acid crystals

    NASA Astrophysics Data System (ADS)

    Flakus, Henryk T.; Hachuła, Barbara; Hołaj-Krzak, Jakub T.

    2015-05-01

    The spectral properties of four different crystalline succinic acid (HOOC-(CH2)2-COOH) (SAC) isotopomer systems, h6, d2, d4 and d6, were examined by means of the IR spectroscopy in polarized light aided by numerical simulations of the νO-H and νO-D band contour shapes on utilizing the "strong-coupling" model. The abnormal IR spectral properties of SAC crystals in relation to the corresponding properties of glutaric, pimelic and adipic acid crystals were ascribed to the hyperconjugation electronic effects in the acid associated molecules. A vibronic coupling mechanism involving the proton stretching vibrations in the (COOH)2 cycles and the electronic motions in the molecular skeletons, the isotopic "H/D self-organization" mechanisms and a long-distance vibrational exciton coupling between the adjacent (COOH)2 cycles in the molecular chains are mainly responsible for the generation of the temperature effects in the crystalline IR spectra.

  2. Absorption spectra and light penetration depth of normal and pathologically altered human skin

    NASA Astrophysics Data System (ADS)

    Barun, V. V.; Ivanov, A. P.; Volotovskaya, A. V.; Ulashchik, V. S.

    2007-05-01

    A three-layered skin model (stratum corneum, epidermis, and dermis) and engineering formulas for radiative transfer theory are used to study absorption spectra and light penetration depths of normal and pathologically altered skin. The formulas include small-angle and asymptotic approximations and a layer-addition method. These characteristics are calculated for wavelengths used for low-intensity laser therapy. We examined several pathologies such as vitiligo, edema, erythematosus lupus, and subcutaneous wound, for which the bulk concentrations of melanin and blood vessels or tissue structure (for subcutaneous wound) change compared with normal skin. The penetration depth spectrum is very similar to the inverted blood absorption spectrum. In other words, the depth is minimal at blood absorption maxima. The calculated absorption spectra enable the power and irradiation wavelength providing the required light effect to be selected. Relationships between the penetration depth and the diffuse reflectance coefficient of skin (unambiguously expressed through the absorption coefficient) are analyzed at different wavelengths. This makes it possible to find relationships between the light fields inside and outside the tissue.

  3. Theoretical electronic absorption and natural circular dichroism spectra of (-)-trans-cyclooctene

    NASA Astrophysics Data System (ADS)

    Pedersen, Thomas Bondo; Koch, Henrik

    2000-02-01

    Using the random phase approximation and coupled cluster singles and doubles linear response theory in conjunction with two basis sets of augmented double-zeta quality and two nuclear geometries, we have calculated electronic absorption and natural circular dichroism spectra of (-)-trans-cyclooctene. We present a density functional theory optimized nuclear geometry whose ground state electric dipole moment and harmonic vibrational spectrum compare well with experimental data. The coupled cluster results obtained with this nuclear geometry are in good agreement with experimental electronic spectra, although the original interpretation of the most intense low-lying band as a π→π* transition is contradicted.

  4. Two-dimensional J-spectra with absorption-mode lineshapes

    NASA Astrophysics Data System (ADS)

    Pell, Andrew J.; Keeler, James

    2007-12-01

    Two-dimensional J-spectroscopy offers the possibility of a complete separation of chemical shifts and J-couplings. However, the usefulness of the experiment is considerably reduced by the fact that peaks in the spectra have the phase-twist lineshape. We present a simple new spectroscopic method for recording J-spectra in which the peaks are both in the absorption mode and retain their natural intensities, albeit at the cost of a considerable reduction in the signal-to-noise ratio. No special data-processing is required. The method is tested on quinine, and the steroid dehydroisoandrosterone.

  5. Absorption spectra of HCFC-22 around 829/cm at atmospheric conditions

    NASA Technical Reports Server (NTRS)

    Varanasi, Prasad

    1992-01-01

    Spectral absorption coefficients of HCFC-22 have been measured around 829/cm in the laboratory at various temperature-pressure combinations chosen to represent tangent heights (as in solar-occultation experiments) or layers in the atmosphere. The data measured employing the Doppler-limited spectra resolution (about 10 exp -4/cm) of a tunable diode laser spectrometer are free of instrumental distortion and are more practical in this case than the spectral line parameters adapted in conventional line-by-line procedures for analyzing atmospheric spectra. The present data obtained with N2 as the broadening gas are shown to be directly applicable to the real atmosphere.

  6. Parallel β-sheet vibrational couplings revealed by 2D IR spectroscopy of an isotopically labeled macrocycle: quantitative benchmark for the interpretation of amyloid and protein infrared spectra.

    PubMed

    Woys, Ann Marie; Almeida, Aaron M; Wang, Lu; Chiu, Chi-Cheng; McGovern, Michael; de Pablo, Juan J; Skinner, James L; Gellman, Samuel H; Zanni, Martin T

    2012-11-21

    Infrared spectroscopy is playing an important role in the elucidation of amyloid fiber formation, but the coupling models that link spectra to structure are not well tested for parallel β-sheets. Using a synthetic macrocycle that enforces a two stranded parallel β-sheet conformation, we measured the lifetimes and frequency for six combinations of doubly (13)C═(18)O labeled amide I modes using 2D IR spectroscopy. The average vibrational lifetime of the isotope labeled residues was 550 fs. The frequencies of the labels ranged from 1585 to 1595 cm(-1), with the largest frequency shift occurring for in-register amino acids. The 2D IR spectra of the coupled isotope labels were calculated from molecular dynamics simulations of a series of macrocycle structures generated from replica exchange dynamics to fully sample the conformational distribution. The models used to simulate the spectra include through-space coupling, through-bond coupling, and local frequency shifts caused by environment electrostatics and hydrogen bonding. The calculated spectra predict the line widths and frequencies nearly quantitatively. Historically, the characteristic features of β-sheet infrared spectra have been attributed to through-space couplings such as transition dipole coupling. We find that frequency shifts of the local carbonyl groups due to nearest neighbor couplings and environmental factors are more important, while the through-space couplings dictate the spectral intensities. As a result, the characteristic absorption spectra empirically used for decades to assign parallel β-sheet secondary structure arises because of a redistribution of oscillator strength, but the through-space couplings do not themselves dramatically alter the frequency distribution of eigenstates much more than already exists in random coil structures. Moreover, solvent exposed residues have amide I bands with >20 cm(-1) line width. Narrower line widths indicate that the amide I backbone is solvent

  7. Experimental and theoretical studies on compositions, structures, and IR and NMR spectra of functionalized protic ionic liquids.

    PubMed

    Cui, Yingna; Yin, Jingmei; Li, Changping; Li, Shenmin; Wang, Ailing; Yang, Guang; Jia, Yingping

    2016-07-20

    The compositions and structures of amine-based functionalized protic ionic liquids (PILs), namely N,N-dimethyl(cyanoethyl)ammonium propionate (DMCEAP) and N,N-dimethyl(hydroxyethyl)ammonium propionate (DMEOAP) have been investigated systematically by IR and (1)H NMR spectroscopy and density functional theory (DFT) calculations. Analysis of the IR spectra suggests that both DMCEAP and DMEOAP are composed of neutral and ionized species in the liquid phase, the former one mainly existing in the state of precursor molecules, and the latter mainly as ion-pairs. The ratio of precursor molecules to ion-pairs in the liquid phase depends on the types of precursors, especially the functional groups of cations. (1)H NMR spectra indicate that there is a dynamic equilibrium between the neutral and ionized species, probably due to the formation of some intermediates in the PILs. The DFT calculations have been carried out to reveal the conformation, and obtain the corresponding IR and (1)H NMR spectra of the neutral and ionized species, so that the theoretical support to the experimental results can be provided. The present study will help understand the properties of PILs and provide guidance for further applications of PILs. PMID:27385035

  8. A Systematic Search for the Spectra with Features of Crystalline Silicates in the Spitzer IRS Enhanced Products

    NASA Astrophysics Data System (ADS)

    Chen, Rui; Luo, Ali; Liu, Jiaming; Jiang, Biwei

    2016-06-01

    The crystalline silicate features are mainly reflected in infrared bands. The Spitzer Infrared Spectrograph (IRS) collected numerous spectra of various objects and provided a big database to investigate crystalline silicates in a wide range of astronomical environments. We apply the manifold ranking algorithm to perform a systematic search for the spectra with crystalline silicate features in the Spitzer IRS Enhanced Products available. In total, 868 spectra of 790 sources are found to show the features of crystalline silicates. These objects are cross-matched with the SIMBAD database as well as with the Large Sky Area Multi-object Fiber Spectroscopic Telescope (LAMOST)/DR2. The average spectrum of young stellar objects shows a variety of features dominated either by forsterite or enstatite or neither, while the average spectrum of evolved objects consistently present dominant features of forsterite in AGB, OH/IR, post-AGB, and planetary nebulae. They are identified optically as early-type stars, evolved stars, galaxies and so on. In addition, the strength of spectral features in typical silicate complexes is calculated. The results are available through CDS for the astronomical community to further study crystalline silicates.

  9. A first principle study for the adsorption and absorption of carbon atom and the CO dissociation on Ir(100) surface

    SciTech Connect

    Erikat, I. A.; Hamad, B. A.

    2013-11-07

    We employ density functional theory to examine the adsorption and absorption of carbon atom as well as the dissociation of carbon monoxide on Ir(100) surface. We find that carbon atoms bind strongly with Ir(100) surface and prefer the high coordination hollow site for all coverages. In the case of 0.75 ML coverage of carbon, we obtain a bridging metal structure due to the balance between Ir–C and Ir–Ir interactions. In the subsurface region, the carbon atom prefers the octahedral site of Ir(100) surface. We find large diffusion barrier for carbon atom into Ir(100) surface (2.70 eV) due to the strong bonding between carbon atom and Ir(100) surface, whereas we find a very small segregation barrier (0.22 eV) from subsurface to the surface. The minimum energy path and energy barrier for the dissociation of CO on Ir(100) surface are obtained by using climbing image nudge elastic band. The energy barrier of CO dissociation on Ir(100) surface is found to be 3.01 eV, which is appreciably larger than the association energy (1.61 eV) of this molecule.

  10. Theoretical calculations on the electron absorption spectra of selected Polycyclic Aromatic Hydrocarbons (PAH) and derivatives

    NASA Technical Reports Server (NTRS)

    Du, Ping

    1993-01-01

    As a theoretical component of the joint effort with the laboratory of Dr. Lou Allamandola to search for potential candidates for interstellar organic carbon compound that are responsible for the visible diffuse interstellar absorption bands (DIB's), quantum mechanical calculations were performed on the electron absorption spectra of selected polycyclic aromatic hydrocarbons (PAH) and derivatives. In the completed project, 15 different species of naphthalene, its hydrogen abstraction and addition derivatives, and corresponding cations and anions were studied. Using semiempirical quantum mechanical method INDO/S, the ground electronic state of each species was evaluated with restricted Hartree-Fock scheme and limited configuration interaction. The lowest energy spin state for each species was used for electron absorption calculations. Results indicate that these calculations are accurate enough to reproduce the spectra of naphthalene cation and anion observed in neon matrix. The spectral pattern of the hydrogen abstraction and addition derivatives predicted based on these results indicate that the electron configuration of the pi orbitals of these species is the dominant determinant. A combined list of 19 absorptions calculated from 4500 A to 10,400 A were compiled and suggested as potential candidates that are relevant for the DIB's absorptions. Continued studies on pyrene and derivatives revealed the ground state symmetries and multiplicities of its neutral, anionic, and cationic species. Spectral calculations show that the cation (B(sub 3g)-2) and the anion (A(sub u)-2) are more likely to have low energy absorptions in the regions between 10 kK and 20 kK, similar to naphthalene. These absorptions, together with those to be determined from the hydrogen abstraction and addition derivatives of pyrene, can be used to provide additional candidates and suggest experimental work in the search for interstellar compounds that are responsible for DIB's.

  11. Optical Constants of Silicon Carbide for Astrophysical Applications. II. Extending Optical Functions from Infrared to Ultraviolet Using Single-Crystal Absorption Spectra

    NASA Astrophysics Data System (ADS)

    Hofmeister, A. M.; Pitman, K. M.; Goncharov, A. F.; Speck, A. K.

    2009-05-01

    Laboratory measurements of unpolarized and polarized absorption spectra of various samples and crystal structures of silicon carbide (SiC) are presented from 1200-35000 cm-1 (λ ~ 8-0.28 μm) and used to improve the accuracy of optical functions (n and k) from the infrared (IR) to the ultraviolet (UV). Comparison with previous λ ~ 6-20 μm thin-film spectra constrains the thickness of the films and verifies that recent IR reflectivity data provide correct values for k in the IR region. We extract n and k needed for radiative transfer models using a new "difference method," which utilizes transmission spectra measured from two SiC single-crystals with different thicknesses. This method is ideal for near-IR to visible regions where absorbance and reflectance are low and can be applied to any material. Comparing our results with previous UV measurements of SiC, we distinguish between chemical and structural effects at high frequency. We find that for all spectral regions, 3C (β-SiC) and the \\vec{E}\\bot \\vec{c} polarization of 6H (a type of α-SiC) have almost identical optical functions that can be substituted for each other in modeling astronomical environments. Optical functions for \\vec{E} \\Vert \\vec{c} of 6H SiC have peaks shifted to lower frequency, permitting identification of this structure below λ ~ 4 μm. The onset of strong UV absorption for pure SiC occurs near 0.2 μm, but the presence of impurities redshifts the rise to 0.33 μm. Optical functions are similarly impacted. Such large differences in spectral characteristics due to structural and chemical effects should be observable and provide a means to distinguish chemical variation of SiC dust in space.

  12. Impact of different visible light spectra on oxygen absorption and surface discoloration of bologna sausage.

    PubMed

    Böhner, Nadine; Rieblinger, Klaus

    2016-11-01

    The objective of this study was to evaluate the influence of several visible light spectra in various intensities on the oxygen absorption and surface color of sliced bologna. Sausage samples were stored in a gastight model packaging system and illuminated at 5°C with six single-colored LEDs covering the main part of the visible light spectrum. The initial oxygen level was set at 0.5% in order to simulate common residual oxygen amounts in conventional packaging. The oxygen absorption and the discoloration measured as changes in CIE a*-value were dependent from the applied light intensity. The color stability of bologna was differently affected by light of various wavelengths. The results show that the use of suitable LEDs with specific spectra for display illumination can help to reduce the light induced deterioration of cured sausages in retail markets. PMID:27343458

  13. Observationally determined Fe II oscillator strengths. [interstellar and quasar absorption spectra

    NASA Technical Reports Server (NTRS)

    Van Steenberg, M.; Shull, J. M.; Seab, C. G.

    1983-01-01

    Absorption oscillator strengths for 21 Fe II resonance lines, have been determined using a curve-of-growth analysis of interstellar data from the Copernicus and International Ultraviolet Explorer (IUE) satellites. In addition to slight changes in strengths of the far-UV lines, new f-values are reported for wavelength 1608.45, a prominent line in interstellar and quasar absorption spectra, and for wavelength 2260.08, a weak, newly identified linen in IUE interstellar spectra. An upper limit on the strength of the undetected line at 2366.867 A (UV multiplet 2) is set. Using revised oscillator strengths, Fe II column densities toward 13 OB stars are derived. The interstellar depletions, (Fe/H), relative to solar values range between factors of 10 and 120.

  14. Impact of different visible light spectra on oxygen absorption and surface discoloration of bologna sausage.

    PubMed

    Böhner, Nadine; Rieblinger, Klaus

    2016-11-01

    The objective of this study was to evaluate the influence of several visible light spectra in various intensities on the oxygen absorption and surface color of sliced bologna. Sausage samples were stored in a gastight model packaging system and illuminated at 5°C with six single-colored LEDs covering the main part of the visible light spectrum. The initial oxygen level was set at 0.5% in order to simulate common residual oxygen amounts in conventional packaging. The oxygen absorption and the discoloration measured as changes in CIE a*-value were dependent from the applied light intensity. The color stability of bologna was differently affected by light of various wavelengths. The results show that the use of suitable LEDs with specific spectra for display illumination can help to reduce the light induced deterioration of cured sausages in retail markets.

  15. Source brightness fluctuation correction of solar absorption Fourier Transform mid infrared spectra

    NASA Astrophysics Data System (ADS)

    Ridder, T.; Warneke, T.; Notholt, J.

    2011-01-01

    Solar absorption Fourier Transform infrared spectrometry is considered a precise and accurate method for the observation of trace gases in the atmosphere. The precision and accuracy of such measurements are dependent on the stability of the light source. Fluctuations in the source brightness reduce the precision and accuracy of the trace gas concentrations, but cannot always be avoided. Thus, a strong effort is made within the community to reduce the impact of source brightness fluctuations by applying a correction on the spectra following the measurements. So far, it could be shown that the precision and accuracy of CO2 total column concentrations could be improved by applying a source brightness fluctuation correction to spectra in the near infrared spectral region. The analysis of trace gas concentrations obtained from spectra in the mid infrared spectral region is fundamental. However, spectra below 2000 cm-1 are generally considered uncorrectable, if they are measured with a MCT detector. Such measurements introduce an unknown offset to MCT interferograms, which prevents a source brightness fluctuation correction. Here, we show a method of source brightness fluctuation correction, which can be applied on spectra in the whole infrared spectral region including spectra measured with a MCT detector. We present a solution to remove the unknown offset in MCT interferograms allowing MCT spectra for an application of source brightness fluctuation correction. This gives an improvement in the quality of MCT spectra and we demonstrate an improvement in the retrieval of O3 profiles and total column concentrations. For a comparison with previous studies, we apply our source brightness fluctuation correction method on spectra in the near infrared spectral region and show an improvement in the retrieval of CO2 total column concentrations.

  16. Emission and absorption spectra of some bridged 1,5-benzodiazepines

    NASA Astrophysics Data System (ADS)

    Mellor, J. M.; Pathirana, R. N.; Stibbard, J. H. A.

    Absorption spectra in neutral and acidic media are reported for a series of bridged 1,5-benzodiazepines, which are unable to tautomerize. Comparison is made with non-bridged 1,5-benzodiazepines capable of tautomeric rearrangement. Both bridged and non-bridged 1,5-benzodiazepines are essentially non-fluorescent due to the "proximity effect" of interaction between singlet ηπ* and ππ* states of similar energy, a phenomenon previously recognised in six-membered nitrogen heterocycles.

  17. Infrared and electronic absorption spectra as well as ultrafast spin dynamics in isolated Co3+(EtOH) and Co3+(EtOH,H2O) clusters

    NASA Astrophysics Data System (ADS)

    Jin, Wei; Becherer, Markus; Bellaire, Daniel; Lefkidis, Georgios; Gerhards, Markus; Hübner, Wolfgang

    2014-04-01

    We present a combined theoretical and experimental study of the infrared (IR) and electronic absorption spectra in a molecular beam experiment as well as an analysis of spin dynamics in the clusters Co3+(EtOH) and Co3+(EtOH,H2O). The calculated IR and ground-state absorption spectra show very good agreement with experiment. By using high-level quantum chemistry methods, laser-induced ultrafast spin-flip scenarios in these structures are predicted. For the spin flip in Co3+(EtOH), our investigation indicates a 5 meV tolerance with respect to the laser detuning and a 6.5 meV tolerance with respect to the pulse spectral broadening, which are quite acceptable for the experimental implementation. In addition, we find that with the increase of the laser detuning the fitness of the processes gradually decays to zero on both sides but with different origins. This joint study of the homotrinuclear clusters provides insight into the experimentally observed spectra and optical properties, and steps towards the optical control of molecular magnetism for future spintronics application.

  18. Measurements of niobium absorption spectra in plasmas with nearly full M-shell configurations

    NASA Astrophysics Data System (ADS)

    Hoarty, D. J.; Harris, J. W. O.; Graham, P.; Davidson, S. J.; James, S. F.; Crowley, B. J. B.; Clark, E. L.; Smith, C. C.; Upcraft, L.

    2007-10-01

    A systematic study has been carried out on the changes in the L-shell absorption structure of niobium as a result of changing the population of the n = 3 shell from full to having vacancies in the 3d level. The niobium spectra were measured in the 2-3 keV frequency range, which spanned the 2p-nd transitions where 3 ≤ n ≤ 11. In addition to the detailed structure in these arrays the data also show 2s-4p and 2p-4s transitions and the bound-free L edge. The frequencies and widths of transition arrays, transmission between arrays, and the absorption due to the bound-free edge, can be seen in the data. The sample conditions were found from a combination of two-dimensional radiation-hydrodynamics calculations using the AWE NYM code and flux measurements using X-ray diodes, measurements of 1s-2p absorption spectra in aluminium and mixed aluminium/niobium samples. The electron temperature error, inferred from the modelling, is ±2 eV, with a density error of 30%. The data were recorded over the temperature range from ˜28 to 45 eV and show marked changes in the spectra over this range. The data were compared to spectra predicted by the AWE CASSANDRA [B.J.B. Crowley, J.W.O. Harris, J. Quant. Spectrosc. Radiat. Transfer 71 (2000) p. 257] opacity code. The calculated spectra were able to reproduce the measurements reasonably well. However, there are some differences in line positions that cannot be accounted for by gradients and there are differences in the array structure in the prediction and the measurements, with additional structure predicted but not seen in the measurements. There is also lower transmission on the blue side of the 2p-3d transition arrays compared to prediction.

  19. Near infrared cavity enhanced absorption spectra of atmospherically relevant ether-1, 4-Dioxane

    NASA Astrophysics Data System (ADS)

    Chandran, Satheesh; Varma, Ravi

    2016-01-01

    1, 4-Dioxane (DX) is a commonly found ether in industrially polluted atmosphere. The near infrared absorption spectra of this compound has been recorded in the region 5900-8230 cm- 1 with a resolution of 0.08 cm- 1 using a novel Fourier transform incoherent broadband cavity-enhanced absorption spectrometer (FT-IBBCEAS). All recorded spectra were found to contain regions that are only weakly perturbed. The possible combinations of fundamental modes and their overtone bands corresponding to selected regions in the measured spectra are tabulated. Two interesting spectral regions were identified as 5900-6400 cm- 1 and 8100-8230 cm- 1. No significant spectral interference due to presence of water vapor was observed suggesting the suitability of these spectral signatures for spectroscopic in situ detection of DX. The technique employed here is much more sensitive than standard Fourier transform spectrometer measurements on account of long effective path length achieved. Hence significant enhancement of weaker absorption lines above the noise level was observed as demonstrated by comparison with an available measurement from database.

  20. [Study on the absorption and fluorescence spectra of ethylene glycol and glycerol].

    PubMed

    Xu, Hui; Zhu, Tuo; Yu, Rui-Peng

    2007-07-01

    The absorption and fluorescence spectra of ethylene glycol and glycerol solution induced by UV light were studied respectively in the present paper. The most intense absorption wavelength for both of them was located at 198 nm. Moreover, fluorescence was detected when induced by suitable UV light, and the corresponding fluorescence spectra were listed. But there is no obvious relationship found between the fluorescence intensity and the excited wavelength, and a further research should be done. From the first derivative fluorescence spectra of ethylene glycol, it was concluded that under the UV light of 210 nm, the variation speed for relative intensity proved to be the fastest. In contrast, when excited by 225 nm, the speed proved to be the slowest. In addition, based on the quantum calculation and the transition from HOMO to LUMO of electronics in one-dimensional quantum well, the authors attempted to give out the value of absorption wavelength. In consideration of the bond-length variety brought out by the chain processing, the error between the experimental and calculation values should be apprehensible, and the latter can serve as some reference value in theory.

  1. The use of commercial glass as a potential gamma accidental dosimeter through the absorption spectra

    NASA Astrophysics Data System (ADS)

    Kharita, M. H.; Yousef, S.; Bakr, S.

    2012-05-01

    Various types of commercial glass (ordinary windows, cathode ray tubes, glass kitchenware) have been studied as potential accidental radiation dosimeters. The proposed method utilizes the changes in the glasses' absorption spectra as a result of irradiation. A 60Co gamma irradiation cell has been used to irradiate samples with doses ranging from 5 to 200 Gy. The transmittance was measured using a photospectrometer (UV-visible spectrometry). The results demonstrate that the transmittance spectra of most of the glass samples change in linear proportion to the exposure dose. Moreover, the study considers the fading effect on the absorption spectra of the irradiated samples for fading times up to 100 days at room temperature. The results of this work demonstrate that several widely used types of glass can be used as high-dose accidental dosimeters for doses ranging between 8 and 200 Gy. A reasonable calibration line can be established for any irradiated glass sample by heating, re-irradiating with standard doses and measuring the related absorption coefficient. Further investigations are needed to decrease the minimum detectable dose of the proposed method and to study the effect of glass composition on radiation response.

  2. Hot Experimental Absorption Spectra of CH_4 in the Pentad and Octad Region

    NASA Astrophysics Data System (ADS)

    Hargreaves, Robert J.; Dulick, Michael; Bernath, Peter F.

    2014-06-01

    We present comprehensive line lists of CH_4 at high temperatures for the pentad and octad region (2400-5000 wn). These spectra improve on our previous emission measurements for this region by using a new quartz sample cell in conjunction with a tube furnace (pictured). Ten temperatures have been recorded from room temperature up to 1000°C and our technique involves the acquisition of four separate Fourier transform infrared spectra at each temperature, thus accounting for both the emission and absorption of the molecule and the cell. By combining these four spectra we obtain true transmission spectra of hot CH_4 in this region. Analysis of this set of spectra enables the production of a line list that includes the position, intensity and empirical lower state energy. Our spectra and line lists can be used directly to model planetary atmospheres and brown dwarfs. Hargreaves, R.J., Beale, C.A., Michaux, L., Irfan, M., & Bernath, P.F. 2012, ApJ, 757, 46

  3. Optical absorption spectra of substitutional Co2+ ions in Mgx Cd1-x Se alloys

    NASA Astrophysics Data System (ADS)

    Jin, Moon-Seog; Kim, Chang-Dae; Jang, Kiwan; Park, Sang-An; Kim, Duck-Tae; Kim, Hyung-Gon; Kim, Wha-Tek

    2006-09-01

    Optical absorption spectra of substitutional Co2+ ions in Mgx Cd1-x Se alloys were investigated in the composition region of 0.0 x 0.4 and in the wavelength region of 300 to 2500 nm at 4.8 K and 290 K. We observed several absorption bands in the wavelength regions corresponding to the 4A2(4F) 4T1(4P) transition and the 4A2(4F) 4T1(4F) transition of Co2+ at a tetrahedral Td point symmetry point in the host crystals, as well as unknown absorption bands. The several absorption bands were analyzed in the framework of the crystal-field theory along with the second-order spin-orbit coupling. The unknown absorption bands were assigned as due to phonon-assisted absorption bands. We also investigated the variations of the crystal-field parameter Dq and the Racah parameter B with composition x in the Mgx Cd1-x Se system. The results showed that the crystal-field parameter (Dq ) increases, on the other hand, the Racah parameter (B ) decreases with increasing composition x, which may be connected with an increase in the covalency of the metal-ligand bond with increasing composition x in the Mgx Cd1-x Se system.

  4. Twin-peaks absorption spectra of excess electron in ionic liquids

    NASA Astrophysics Data System (ADS)

    Musat, Raluca M.; Kondoh, Takafumi; Yoshida, Yoichi; Takahashi, Kenji

    2014-07-01

    The solvated electron in room temperature ionic liquids (RTILs) has been the subject of several investigations and several reports exist on its nature and absorption spectrum. These studies concluded that the solvated electron exhibits an absorption spectrum peaking in the 1000-1400 nm region; a second absorption band peaking in the UV region has been assigned to the hole or dication radicals simultaneously formed in the system. Here we report on the fate of the excess electron in the ionic liquid 1-butyl-1-methylpyrrolidinium bis(trifluoromethylsulfonyl)imide, P14+/NTf2- using nanosecond pulse radiolysis. Scavenging experiments allowed us to record and disentangle the complex spectrum measured in P14+/NTf2-. We identified a bi-component absorption spectrum, due to the solvated electron, the absorption maxima located at 1080 nm and around 300 nm, as predicted by previous ab-initio molecular dynamics simulations for the dry excess electron. We also measured the spectra using different ionic liquids and confirmed the same feature of two absorption peaks. The present results have important implications for the characterization of solvated electrons in ionic liquids and better understanding of their structure and reactivity.

  5. Intelligent information extraction from reflectance spectra Absorption band positions. [application to laboratory and earth-based telescope spectra

    NASA Technical Reports Server (NTRS)

    Huguenin, R. L.; Jones, J. L.

    1986-01-01

    A multiple high-order derivative analysis algorithm has been developed which can automatically extract absorption band positions from low-quality reflectance spectra with little degredation of accuracy. Overlapping bands with comparable widths and intensities can be resolved whose centers are as close as 0.3-0.5 W, with safer resolution limits of 0.6-1.0 W band center separations suggested for overlapping bands that are dissimilar. The segment length for smoothing is continually adjusted to about 0.5 W to minimize signal distortion, and a spectral pattern recognition algorithm predicts the signal spectrum and calculates approximate W across the spectrum using its second derivative. A single-pass cubic spline is applied to the smoothed data, and a sliding segment sixth-order polynomial is fit to the spectrum, with the length of the segment being continuously locally adjusted to 1.0 W across the spectrum. Good reliability and consistency of the algorithm is demonstrated with application to laboratory and earth-based telescope spectra.

  6. Anharmonic modeling of the conformation-specific IR spectra of ethyl, n-propyl, and n-butylbenzene

    NASA Astrophysics Data System (ADS)

    Tabor, Daniel P.; Hewett, Daniel M.; Bocklitz, Sebastian; Korn, Joseph A.; Tomaine, Anthony J.; Ghosh, Arun K.; Zwier, Timothy S.; Sibert, Edwin L.

    2016-06-01

    Conformation-specific UV-IR double resonance spectra are presented for ethyl, n-propyl, and n-butylbenzene. With the aid of a local mode Hamiltonian that includes the effects of stretch-scissor Fermi resonance, the spectra can be accurately modeled for specific conformers. These molecules allow for further development of a first principles method for calculating alkyl stretch spectra. Across all chain lengths, certain dihedral patterns impart particular spectral motifs at the quadratic level. However, the anharmonic contributions are consistent from molecule to molecule and conformer to conformer. This transferability of anharmonicities allows for the Hamiltonian to be constructed from only a harmonic frequency calculation, reducing the cost of the model. The phenyl ring alters the frequencies of the CH2 stretches by about 15 cm-1 compared to their n-alkane counterparts in trans configurations. Conformational changes in the chain can lead to shifts in frequency of up to 30 cm-1.

  7. Photon-photon absorption and the uniqueness of the spectra of active galactic nuclei

    NASA Technical Reports Server (NTRS)

    Kazanas, D.

    1984-01-01

    The effects of the feedback of e(+)-e(-) pair reinjection in a plasma due to photon-photon absorption of its own radiation was examined. Under the assumption of continuous electron injection with a power law spectrum E to the minus gamma power and Compton losses only, it is shown that for gamma 2 the steady state electron distribution function has a unique form independent of the primary injection spectrum. This electron distribution function can, by synchrotron emission, reproduce the general characteristics of the observed radio to optical active galactic nuclei spectra. Inverse Compton scattering of the synchrotron photons by the same electron distribution can account for their X-ray spectra, and also implies gamma ray emission from these objects. This result is invoked to account for the similarity of these spectra, and it is consistent with observations of the diffuse gamma ray background.

  8. TDDFT prediction of UV-vis absorption and emission spectra of tocopherols in different media.

    PubMed

    Bakhouche, Kahina; Dhaouadi, Zoubeida; Lahmar, Souad; Hammoutène, Dalila

    2015-06-01

    We use the TDDFT/PBE0/6-31+G* method to determine the electronic absorption and emission energies, in different media, of the four forms of tocopherol, which differ by the number and the position of methyl groups on the chromanol. Geometries of the ground state S0 and the first singlet excited state S1 were optimized in the gas phase, and various solvents. The solvent effect is evaluated using an implicit solvation model (IEF-PCM). Our results are compared to the experimental ones obtained for the vitamin E content in several vegetable oils. For all forms of tocopherols, the HOMO-LUMO first vertical excitation is a π-π* transition. Gas phase and non-polar solvents (benzene and toluene) give higher absorption wavelengths than polar solvents (acetone, ethanol, methanol, DMSO, and water); this can be interpreted by a coplanarity between the O-H group and the chroman, allowing a better electronic resonance of the oxygen lone pairs and the aromatic ring, and therefore giving an important absorption wavelength, whereas the polar solvents give high emission wavelengths comparatively to gas phase and non-polar solvents. Fluorescence spectra permit the determination, the separation, and the identification of the four forms of tocopherols by a large difference in emission wavelength values. Graphical Abstract Scheme from process methodological to obtain the absorption and emission spectra for tocopherols.

  9. Absorption spectra and photoresponse observation of Cu2O thin film photoanodes

    NASA Astrophysics Data System (ADS)

    Mani, Endri; Garuthara, Rohana

    2014-03-01

    Electrodeposition was used to deposit Cu2O thin films on ITO substrates. The deposited Cu2O films were characterized by photocurrent, absorption and reflectance spectroscopy. Photoresponse of the film clearly indicated n-type behavior of Cu2O in photoelectrochemical cells. The effects of chlorine doped photoanodes deposited in different solution pH on the magnitude of their photocurrent are studied. The low temperature absorption spectra of chlorine doped Cu2O films are found to depend on the solution pH in the range 10.0-7.5. Optical absorption spectra of Cu2O films were measured in the temperature range 79K - 295K. The Urbach's tail was observed for n-type conductive Cu2O films in the temperature range 79K to 295K. The Urbach's energy as a function of temperature for Cu2O films were studied. The results will be discussed with emphasis on the reflectance, absorption and photoresponse observation.

  10. Determining CDOM Absorption Spectra in Diverse Aquatic Environments Using a Multiple Pathlength, Liquid Core Waveguide System

    NASA Technical Reports Server (NTRS)

    Miller, Richard L.; Belz, Mathias; DelCastillo, Carlos; Trzaska, Rick

    2001-01-01

    We evaluated the accuracy, sensitivity and precision of a multiple pathlength, liquid core waveguide (MPLCW) system for measuring colored dissolved organic matter (CDOM) absorption in the UV-visible spectral range (370-700 nm). The MPLCW has four optical paths (2.0, 9.8, 49.3, and 204 cm) coupled to a single Teflon AF sample cell. Water samples were obtained from inland, coastal and ocean waters ranging in salinity from 0 to 36 PSU. Reference solutions for the MPLCW were made having a refractive index of the sample. CDOM absorption coefficients, aCDOM, and the slope of the log-linearized absorption spectra, S, were compared with values obtained using a dual-beam spectrophotometer. Absorption of phenol red secondary standards measured by the MPLCW at 558 nm were highly correlated with spectrophotometer values and showed a linear response across all four pathlengths. Values of aCDOM measured using the MPLCW were virtually identical to spectrophotometer values over a wide range of concentrations. The dynamic range of aCDOM for MPLCW measurements was 0.002 - 231.5 m-1. At low CDOM concentrations spectrophotometric aCDOM were slightly greater than MPLCW values and showed larger fluctuations at longer wavelengths due to limitations in instrument precision. In contrast, MPLCW spectra followed an exponential to 600 nm for all samples.

  11. Nonlinear fitting of absorption edges in K-edge densitometry spectra

    SciTech Connect

    Collins, M.; Hsue, Sin-Tao

    1997-11-01

    A new method for analyzing absorption edges in K-Edge Densitometry (KED) spectra is introduced. This technique features a nonlinear function that specifies the empirical form of a broadened K-absorption edge. Nonlinear fitting of the absorption edge can be used to remove broadening effects from the KED spectrum. This allows more data near the edge to be included in the conventional KED fitting procedure. One possible benefit is enhanced precision of measured uranium and plutonium concentrations. Because no additional hardware is required, several facilities that use KED may eventually benefit from this approach. Applications of nonlinear KED fitting in the development of the Los Alamos National Laboratory (LANL) hybrid K-edge/x-ray fluorescence (XRF) densitometer system are described.

  12. Reflectance Spectra of Ureilites: Nature of the Mafic Silicate Absorption Features

    NASA Technical Reports Server (NTRS)

    Cloutis, E. A.; Hudon, P.

    2004-01-01

    Ureilites are unique carbon-bearing achondrites. They are composed primarily of olivine and pyroxene with minor amounts of finely dispersed matrix material consisting mostly of carbon, metal, sulfides and fine-grained silicates. As is the case with many classes of meteorites, no clear chain of evidence exists which can relate them to specific asteroidal parent bodies. In order to provide insights into parent body connections, visible and near-IR (VNIR) reflectance spectra of a number of ureilites have been measured and analyzed in light of their mineralogy.

  13. Ultraviolet and infrared absorption spectra of Cr2O3 doped-sodium metaphosphate, lead metaphosphate and zinc metaphosphate glasses and effects of gamma irradiation: a comparative study.

    PubMed

    Marzouk, M A; ElBatal, F H; Abdelghany, A M

    2013-10-01

    The effects of gamma irradiation on spectral properties of Cr2O3-doped phosphate glasses of three varieties, namely sodium metaphosphate, lead metaphosphate and zinc metaphosphate have been investigated. Optical spectra of the undoped samples reveal strong UV absorption bands which are attributed to the presence of trace iron impurities in both the sodium and zinc phosphate glasses while the lead phosphate glass exhibits broad UV near visible bands due to combined absorption of both trace iron impurities and divalent lead ions. The effect of chromium oxide content has been investigated. The three different Cr2O3-doped phosphate glasses reveal spectral visible bands varying in their position and intensity and splitting due to the different field strengths of the Na(+), Pb(2+), Zn(2+) cations, together with the way they are housed in the network and their effects on the polarisability of neighboring oxygens ligands. The effects of gamma irradiation on the optical spectral properties of the various glasses have been compared. The different effects for lead and zinc phosphate are related to the ability of Pb(2+), and Zn(2+) to form additional structural units causing stability of the network towards gamma irradiation. Also, the introduction of the transition metal chromium ions reveals some shielding behavior towards irradiation. Infrared absorption spectra of the three different base phosphate glasses show characteristic vibrations due to various phosphate groups depending on the type of glass and Cr2O3 is observed to slightly affect the IR spectra. Gamma irradiation causes minor variations in some of the intensities of the IR spectra but the main characteristic bands due to phosphate groups remain in their number and position. PMID:23816486

  14. The hydration dependence of CaCO3 absorption lines in the Far IR

    NASA Astrophysics Data System (ADS)

    Powell, Johnny; Emery, Logan P

    2014-06-01

    The far infrared (FIR) absorption lines of CaCO3 have been measured at a range of relative humidities (RH) between 33 and 92% RH using a Bruker 66v/S spectrometer. Hydration measurements on CaCO3 have been made in the mid-infrared (MIR) by [Al-Hosney, H.A. and Grassian, V.H., 2005, Phys. Chem. Chem. Phys., 7, 1266], and astrophysically-motivated temperature-dependent FIR measurements of CaCO3 in vacuum have also been reported [Posch, T., et al., 2007, Ap. J., 668, 993]. The custom sample cell constructed for these hydrated-FIR spectra is required because the 66v/S bench is under vacuum (3 mbar) during typical measurements. Briefly, the sample cell consists of two Thalium Bromoiodide (KRS-5) windows, four O-rings, a plastic ring for separating the windows and providing a volume for the saturated atmosphere. CaCO3 was deposited on KRS-5 windows using doubly-distilled water as an intermediary. The KRS-5 window with sample and assembled sample cell were placed in a desiccator with the appropriated saturated salt solution [Washburn, E.W. (Ed.), International Critical Tables of Numerical Data, Physics Chemistry and Technology, Vol. 1, (McGraw-Hill, New York, 1926), p. 67-68] and allowed to hydrate for 23 hours. For spectroscopy the desiccator was quickly opened and the second KRS-5 window placed in the cell to seal the chamber. A spectrum was then taken of the sample at the appropriate RH. The spectra taken characterize the adsorption of water vapor and CaCO3 that might occur in circumstellar environments [Melnick, G.J., et al. 2001, Nature, 412, 160].The MIR and FIR reflectance spectra of calcite (CaCO3) have been thoroughly studied by [Hellwege, K.H., et al., 1970, Z. Physik, 232, 61]. Five Lorentzian curves were fit to our data in the range from 378-222 cm-1/SUP> and each was able to be assigned to a known mode of CaCO3. The data does not support the conclusion of a hydration effect on these modes of CaCO3, but it does suggest a possible broadening of three modes

  15. DISENTANGLING PROTOSTELLAR EVOLUTIONARY STAGES IN CLUSTERED ENVIRONMENTS USING SPITZER-IRS SPECTRA AND COMPREHENSIVE SPECTRAL ENERGY DISTRIBUTION MODELING

    SciTech Connect

    Forbrich, Jan; Tappe, Achim; Robitaille, Thomas; Muench, August A.; Lada, Charles J.; Teixeira, Paula S.; Lada, Elizabeth A.; Stolte, Andrea

    2010-06-20

    When studying the evolutionary stages of protostars that form in clusters, the role of any intracluster medium cannot be neglected. High foreground extinction can lead to situations where young stellar objects (YSOs) appear to be in earlier evolutionary stages than they actually are, particularly when using simple criteria like spectral indices. To address this issue, we have assembled detailed spectral energy distribution characterizations of a sample of 56 Spitzer-identified candidate YSOs in the clusters NGC 2264 and IC 348. For these, we use spectra obtained with the Infrared Spectrograph (IRS) on board the Spitzer Space Telescope and ancillary multi-wavelength photometry. The primary aim is twofold: (1) to discuss the role of spectral features, particularly those due to ices and silicates, in determining a YSO's evolutionary stage, and (2) to perform comprehensive modeling of SEDs enhanced by the IRS data. The SEDs consist of ancillary optical-to-submillimeter multi-wavelength data as well as an accurate description of the 9.7 {mu}m silicate feature and of the mid-infrared continuum derived from line-free parts of the IRS spectra. We find that using this approach, we can distinguish genuine protostars in the cluster from T Tauri stars masquerading as protostars due to external foreground extinction. Our results underline the importance of photometric data in the far-infrared/submillimeter wavelength range, at sufficiently high angular resolution to more accurately classify cluster members. Such observations are becoming possible now with the advent of the Herschel Space Observatory.

  16. The effect of implanting boron on the optical absorption and electron paramagnetic resonance spectra of silica

    NASA Astrophysics Data System (ADS)

    Magruder, R. H.; Stesmans, A.; Weeks, R. A.; Weller, R. A.

    2008-09-01

    Silica samples (type III, Corning 7940) were implanted with B using multiple energies to produce a layer ˜600 nm thick in which the concentration of B ranged from 0.034 to 2.04 at. %. Optical absorption spectra were measured from 1.8 to 6.5 eV. Electron paramagnetic resonance (EPR) measurements were generally made at ˜20.3 and 33 GHz for sample temperatures ranging from 77 to 100 K. Based on the EPR spectra three types of defects, namely, Eγ', the E'-type 73 G split doublet (E73'), and the peroxyradical (POR) were identified. No oxygen-associated hole centers (OHCs) nor specific B-associated paramagnetic defects were detected, not even at the largest B concentration of 2.04 at. %. Unlike previous assignments, there was no correlation between the 4.83 eV optical absorption band and the observed PORs. From these results, we infer that in addition to POR, there is at least one additional Si-related state absorbing in the 4.8-4.9 eV range that is likely diamagnetic. The 5.85 eV optical absorption band is found to be due to the Eγ' and E73' centers, with, in average, quite similar oscillator strengths inferred as before. Both the optical absorption and the electron spin resonance data can be satisfactorily explained without the need for specific B-associated defect site (s). As no OHCs are detected by ESR, these do not seem to make a detectable contribution to the optical spectra.

  17. Energy and optical absorption spectra of endohedral metallofullerenes with Gd or Ho as strongly correlated π-electron systems

    NASA Astrophysics Data System (ADS)

    Bubnov, V. P.; Kareev, I. E.; Lobanov, B. V.; Murzashev, A. I.; Nekrasov, V. M.

    2016-08-01

    Isomerically pure endohedral metallofullerenes Gd@C82(C2v), Ho@C82( C 2 v ), and their monoanions have been synthesized and separated. The optical absorption spectra of solutions of obtained compounds in o-dichlorobenzene have been studied. Within the Hubbard model, the energy spectrum of isomer of C 2 v symmetry (no. 9) of fullerene C82 has been calculated. Based on the obtained spectrum, optical absorption spectra of endohedral metallofullerenes Gd@C82 and Ho@C82 and their monoanions have been simulated. The calculated optical absorption spectra have been compared with experimental ones; it has been found that qualitative agreement between them is observed.

  18. Narrow C IV absorption doublets on quasar spectra of the Baryon Oscillation Spectroscopic Survey

    NASA Astrophysics Data System (ADS)

    Chen, Zhi-Fu; Gu, Qiu-Sheng; Zhou, Luwenjia; Chen, Yan-Mei

    2016-11-01

    In this paper, we extend our work of Papers I and II, which are assigned to systematically survey C IV λλ1548,1551 narrow absorption lines (NALs) with zabs ≪ zem on quasar spectra of the Baryon Oscillation Spectroscopic Survey (BOSS) to collect C IV NALs with zabs ≈ zem from blue to red wings of C IV λ1549 emission lines. Together with Papers I and II, we have collected a total number of 41 479 C IV NALs with 1.4544 ≤ zabs ≤ 4.9224 in surveyed spectral region redward of Lyα until red wing of C IV λ1549 emission line. We find that the stronger C IV NALs tend to be the more saturated absorptions, and associated systems (zabs ≈ zem) seem to have larger absorption strengths when compared to intervening ones (zabs ≪ zem). The redshift density evolution behaviour of absorbers (the number of absorbers per redshift path) is similar to the history of the cosmic star formation. When compared to the quasar-frame velocity (β) distribution of Mg II absorbers, the β distribution of C IV absorbers is broader at β ≈ 0, shows longer extended tail, and exhibits a larger dispersion for environmental absorptions. In addition, for associated C IV absorbers, we find that low-luminosity quasars seem to exhibit smaller β and stronger absorptions when compared to high-luminosity quasars.

  19. Real-time atmospheric absorption spectra for in-flight tuning of an airborne dial system

    NASA Technical Reports Server (NTRS)

    Dombrowski, M.; Walden, H.; Schwemmer, G. K.; Milrod, J.; Korb, C. L.

    1986-01-01

    Real-time measurements of atmospheric absorption spectra are displayed and used to precisely calibrate and fix the frequency of an Alexandrite laser to specific oxygen absorption features for airborne Differential Absorption Lidar (DIAL) measurements of atmospheric pressure and temperature. The DIAL system used contains two narrowband tunable Alexandrite lasers: one is electronically scanned to tune to oxygen absorption features for on-line signals while the second is used to obtain off-line (nonabsorbed) atmospheric return signals. The lidar operator may select the number of shots to be averaged, the altitude, and altitude interval over which the signals are averaged using single key stroke commands. The operator also determines exactly which oxygen absorption lines are scanned by comparing the line spacings and relative strengths with known line parameters, thus calibrating the laser wavelength readout. The system was used successfully to measure the atmospheric pressure profile on the first flights of this lidar, November 20, and December 9, 1985, aboard the NASA Wallops Electra aircraft.

  20. The Infrared Spectra and Absorption Intensities of Amorphous Ices: Methane and Carbon Dioxide

    NASA Astrophysics Data System (ADS)

    Gerakines, Perry A.; Hudson, Reggie L.; Loeffler, Mark J.

    2015-11-01

    Our research group is carrying out new IR measurements of icy solids relevant to the outer solar system and the interstellar medium, with an emphasis on amorphous and crystalline ices below ~70 K. Our goal is to add to the relatively meager literature on this subject and to provide electronic versions of state-of-the-art data, since the abundances of such molecules cannot be deduced without accurate reference spectra and IR band strengths. In the past year, we have focused on two of the simplest and most abundant components of icy bodies in the solar system - methane (CH4) and carbon dioxide (CO2). Infrared spectra from ˜ 4500 to 500 cm-1 have been measured for each of these molecules in μm-thick films at temperatures from 10 to 70 K. All known amorphous and crystalline phases have been reproduced and, for some, presented for the first time. We also report measurements of the index of refraction at 670 nm and the mass densities for each ice phase. Comparisons are made to earlier work where possible. Electronic versions of our new results are available at http://science.gsfc.nasa.gov/691/cosmicice/ constants.html.

  1. Imaging and two-dimensional spectra of the IR-bright galaxy NGC 2146 - A recent low-energy merger?

    NASA Technical Reports Server (NTRS)

    Hutchings, J. B.; Lo, E.; Neff, S. G.; Stanford, S. A.; Unger, S. W.

    1990-01-01

    New data are presented on the IR-luminous galaxy NGC 2146 from several sources: direct imaging in B, R, and H-alpha; IR imaging in the J, H, and K bands; long-slit spectroscopy at optical and IR wavelengths; and scanning etalon observations in H-alpha. The results allow measurement of the interstellar extinction in the dust lane, and estimation of the true luminosity of the galaxy and nuclear regions. The spectra indicate that there is no active nucleus, and measure the changing ratio of forbidden to permitted lines across the galaxy. IR images and colors indicate the existence of a significant population of hot young stars in the central regions of the system. The H-alpha velocity maps show the full radial-velocity pattern, and suggest that the system consists of a disturbed disk and a merging or interacting arm which connects to the inner dust and radio structures. Outer H-alpha and H I structures appear to be the earlier remnants of this spiraling merger.

  2. [Time resolved UV-Vis absorption spectra of quercetin reacting with various concentrations of sodium hydroxide].

    PubMed

    Yang, Li-Jun; Li, Ping; Gao, Yan-Jun; Li, Hui-Feng; Wu, Da-Cheng; Li, Rui-Xia

    2009-06-01

    A real time investigation of chemical reaction process of quercetin with various concentrations of sodium hydroxide was performed by using an intensified spectroscopic detector ICCD. The time resolved UV-Vis absorption spectra of 5 x 10(-5) mol x L(-1) quercetin respectively reacting with sodium hydroxide at concentrations of 2, 0.2, 0.1, 0.04 and 0.02 mol x L(-1) were acquired. A total of 200 spectra with the same exposure time of 0.1 ms for each spectrum but different time interval between two consecutive spectra were recorded for each reaction. The first 50 spectra have the time interval of 20 ms, the next 50 have 1 s, and the last 100 have 2 s. Results indicate that quercetin reacted with sodium hydroxide easily and there was an intermediate product formed during the reaction, with different concentrations of reactants, the changes of absorption bands were the same, but the moments at which the changes happened were different and the total reaction time was various from 1 s to 100 s. Spectra recorded showed the disappearing process of the typical bands centered at 254 and 374 nm of pure quercetin, the growing and disappearing processes of a new band centered at 427 nm of the intermediate product, and the growing process of the new band centered at 314 nm of the final product obviously. No other transient spectroscopic data are currently available on the reaction of quercrtin with sodium hydroxide, the results obtained in the present work provide useful experimental data for the study of the microscopic process of the reaction.

  3. Assignment of bacteriochlorophyll a ligation state from absorption and resonance raman spectra

    SciTech Connect

    Callahan, P.M.; Cotton, T.M.

    1987-11-11

    Absorption and Soret excitation resonance Raman (RR) spectra have been obtained for a series of coordination forms on monomeric bacteriochlorophyll a (BChl a). Strong and moderate intensity bands are observed in the RR spectrum at 1609 and 1530 cm/sup -1/ for five-coordinate species, which shift to 1595 and 1512 cm/sup -1/, respectively, in the six-coordinate form. These coordination-sensitive vibrations are independent of the nature of the axial ligand and are suggested to have significant C/sub a/ C/sub m/ character, while several other less intense coordination-sensitive bands at 1463, 1444, and 1375 cm/sup -1/ are considered to arise from C/sub b/C/sub b/ and C/sub a/N stretching vibrations. These coordination-sensitive RR bands were used to determine BChl a ligation state in the solvents used, and structure correlations based on absorption maxima have been developed. The Q/sub x/ absorption band position is sensitive not only to BChl a Mg/sup 2 +/ coordination number but also to the nature of the axial ligand, i.e., oxygen, sulfur, or nitrogen. Q/sub x/ maxima are observed at 570, 575-580, and 582 nm for five-coordinate oxygen, sulfur, and nitrogen ligands, respectively, and at 590-595 and 605-612 nm, for six-coordinate oxygen and nitrogen species, respectively. The Q/sub y/ absorption maximum is insensitive to coordination number changes but is dependent on the nature of the axial ligand: 770 nm for oxygen ligand(s) and 775 nm for nitrogen ligand(s). A similar series of absorption and Soret excitation RR spectra were obtained for the demetalated form of BChl a, BPheo a.

  4. Calculation of UV attenuation and colored dissolved organic matter absorption spectra from measurements of ocean color

    NASA Astrophysics Data System (ADS)

    Johannessen, S. C.; Miller, W. L.; Cullen, J. J.

    2003-09-01

    The absorption of ultraviolet and visible radiation by colored or chromophoric dissolved organic matter (CDOM) drives much of marine photochemistry. It also affects the penetration of ultraviolet radiation (UV) into the water column and can confound remote estimates of chlorophyll concentration. Measurements of ocean color from satellites can be used to predict UV attenuation and CDOM absorption spectra from relationships between visible reflectance, UV attenuation, and absorption by CDOM. Samples were taken from the Bering Sea and from the Mid-Atlantic Bight, and water types ranged from turbid, inshore waters to the Gulf Stream. We determined the following relationships between in situ visible radiance reflectance, Lu/Ed (λ) (sr-1), and diffuse attenuation of UV, Kd(λ) (m-1): Kd(323nm) = 0.781[Lu/Ed(412)/Lu/Ed(555)]-1.07; Kd(338nm) = 0.604[Lu/Ed(412)/Lu/Ed(555)]-1.12; Kd(380 nm) = 0.302[Lu/Ed(412)/Lu/Ed(555)]-1.24. Consistent with published observations, these empirical relationships predict that the spectral slope coefficient of CDOM absorption increases as diffuse attenuation of UV decreases. Excluding samples from turbid bays, the ratio of the CDOM absorption coefficient to Kd is 0.90 at 323 nm, 0.86 at 338 nm, and 0.97 at 380 nm. We applied these relationships to SeaWiFS images of normalized water-leaving radiance to calculate the CDOM absorption and UV attenuation in the Mid-Atlantic Bight in May, July, and August 1998. The images showed a decrease in UV attenuation from May to August of approximately 50%. We also produced images of the areal distribution of the spectral slope coefficient of CDOM absorption in the Georgia Bight. The spectral slope coefficient increased offshore and changed with season.

  5. Plant phenolics and absorption features in vegetation reflectance spectra near 1.66 μm

    USGS Publications Warehouse

    Kokaly, Raymond F.; Skidmore, Andrew K

    2015-01-01

    Past laboratory and field studies have quantified phenolic substances in vegetative matter from reflectance measurements for understanding plant response to herbivores and insect predation. Past remote sensing studies on phenolics have evaluated crop quality and vegetation patterns caused by bedrock geology and associated variations in soil geochemistry. We examined spectra of pure phenolic compounds, common plant biochemical constituents, dry leaves, fresh leaves, and plant canopies for direct evidence of absorption features attributable to plant phenolics. Using spectral feature analysis with continuum removal, we observed that a narrow feature at 1.66 μm is persistent in spectra of manzanita, sumac, red maple, sugar maple, tea, and other species. This feature was consistent with absorption caused by aromatic C-H bonds in the chemical structure of phenolic compounds and non-hydroxylated aromatics. Because of overlapping absorption by water, the feature was weaker in fresh leaf and canopy spectra compared to dry leaf measurements. Simple linear regressions of feature depth and feature area with polyphenol concentration in tea resulted in high correlations and low errors (% phenol by dry weight) at the dry leaf (r2 = 0.95, RMSE = 1.0%, n = 56), fresh leaf (r2 = 0.79, RMSE = 2.1%, n = 56), and canopy (r2 = 0.78, RMSE = 1.0%, n = 13) levels of measurement. Spectra of leaves, needles, and canopies of big sagebrush and evergreens exhibited a weak absorption feature centered near 1.63 μm, short ward of the phenolic compounds, possibly consistent with terpenes. This study demonstrates that subtle variation in vegetation spectra in the shortwave infrared can directly indicate biochemical constituents and be used to quantify them. Phenolics are of lesser abundance compared to the major plant constituents but, nonetheless, have important plant functions and ecological significance. Additional research is needed to advance our understanding of the

  6. Separation of deuterium by IR multiphoton decomposition of chlorodifluoromethane. IR multiphoton absorption by and decomposition of a CF 2DCl/CF 2HCl mixture

    NASA Astrophysics Data System (ADS)

    Kutschke, K. O.; Gauthier, M.; Hackett, P. A.

    1983-08-01

    IR multiphoton absorption by various pressures of CF 2HCl or of 1??? CF 2DCl in CF 2HCl was studied at several 9P and 10R lines of the CO 2 laser using temporally unmodified pulses. Values of < n> for the individual molecules, and thus the optical selectivities, obtained from these data indicate that the molecule is not a promising candidate for deuterium separation in these frequency ranges. A measurement of D-isotope depletion during the multiphoton decomposition of the same mixture at 9P42 (1025.2 cm -1) gave a minimum estimate of the isotopic selectivity of the dissociation process of 35.

  7. Time variations of narrow absorption lines in high resolution quasar spectra

    NASA Astrophysics Data System (ADS)

    Boissé, P.; Bergeron, J.; Prochaska, J. X.; Péroux, C.; York, D. G.

    2015-09-01

    Aims: We have searched for temporal variations of narrow absorption lines in high resolution quasar spectra. A sample of five distant sources were assembled, for which two spectra are available, either VLT/UVES or Keck/HIRES, which were taken several years apart. Methods: We first investigate under which conditions variations in absorption line profiles can be detected reliably from high resolution spectra and discuss the implications of changes in terms of small-scale structure within the intervening gas or intrinsic origin. The targets selected allow us to investigate the time behaviour of a broad variety of absorption line systems by sampling diverse environments: the vicinity of active nuclei, galaxy halos, molecular-rich galaxy disks associated with damped Lyα systems, as well as neutral gas within our own Galaxy. Results: Intervening absorption lines from Mg ii, Fe ii, or proxy species with lines of lower opacity tracing the same kind of (moderately ionised) gas appear in general to be remarkably stable (1σ upper limits as low as 10% for some components on scales in the range 10-100 au), even for systems at zabs ≈ ze. Marginal variations are observed for Mg ii lines towards PKS 1229-021 at zabs = 0.83032; however, we detect no systems that display any change as large as those reported in low resolution SDSS spectra. The lack of clear variations for low β Mg ii systems does not support the existence of a specific population of absorbers made of swept-up gas towards blazars. In neutral or diffuse molecular media, clear changes are seen for Galactic Na i lines towards PKS 1229-02 (decrease in N by a factor of four for one of the five components over 9.7 yr), corresponding to structure on a scale of about 35 au, in good agreement with known properties of the Galactic interstellar medium. Tentative variations are detected for H2J = 3 lines towards FBQS J2340-0053 at zabs = 2.05454 (≃35% change in column density, N, over 0.7 yr in the rest frame), suggesting

  8. The Mid-Infrared Absorption Spectra of Neutral PAHs in Dense Interstellar Clouds

    NASA Technical Reports Server (NTRS)

    Bernstein, M. P.; Sandford, S. A.; Allamandola, L. J.

    2005-01-01

    Polycyclic aromatic hydrocarbons (PAHs) are common throughout the universe and are expected to be present in dense interstellar clouds. In these environments, some P.4Hs may be present in the gas phase, but most should be frozen into ice mantles or adsorbed onto dust grains and their spectral features are expected to be seen in absorption. Here we extend our previous work on the infrared spectral properties of the small PAH naphthalene (C10H8) in several media to include the full mid-infrared laboratory spectra of 11 other PAHs and related aromatic species frozen in H2O ices. These include the molecules 1,2-dihydronaphthalene, anthracene, 9,1O-dihydroanthracene, phenanthrene, pyrene, benzo[e]pyrene, perylene, benzo(k)fluoranthene, pentacene, benzo[ghi]perylene, and coronene. These results demonstrate that PAHs and related molecules, as a class, show the same spectral behaviors as naphthalene when incorporated into H2O-rich matrices. When compared to the spectra of these same molecules isolated in inert matrices (e.g., Ar or N2), the absorption bands produced when they are frozen in H2O matrices are broader (factors of 3-10), show small position shifts in either direction (usually < 4/cm, always < 10/cm), and show variable changes in relative band strengths (typically factors of 1-3). There is no evidence of systematic increases or decreases in the absolute strengths of the bands of these molecules when they are incorporated in H2O matrices. In H2O-rich ices, their absorption bands are relatively insensitive to concentration over the range of 10 < H2O/PAH < 200): The absorption bands of these molecules are also insensitive to temperature over the 10 K < T < 125 K range, although the spectra can show dramatic changes as the ices are warmed through the temperature range in which amorphous H2O ice converts to its cubic and hexagonal crystalline forms (T > 125 Kj. Given the small observed band shifts cause by H2O, the current database of spectra from Ar matrix

  9. Infrared band absorptance correlations and applications to nongray radiation. [mathematical models of absorption spectra for nongray atmospheres in order to study air pollution

    NASA Technical Reports Server (NTRS)

    Tiwari, S. N.; Manian, S. V. S.

    1976-01-01

    Various mathematical models for infrared radiation absorption spectra for atmospheric gases are reviewed, and continuous correlations for the total absorptance of a wide band are presented. Different band absorptance correlations were employed in two physically realistic problems (radiative transfer in gases with internal heat source, and heat transfer in laminar flow of absorbing-emitting gases between parallel plates) to study their influence on final radiative transfer results. This information will be applied to the study of atmospheric pollutants by infrared radiation measurement.

  10. Crystal structure and theoretical study of IR and 1H and 13C NMR spectra of cordatin, a natural product with antiulcerogenic activity

    NASA Astrophysics Data System (ADS)

    Brasil, Davi S. B.; Alves, Cláudio N.; Guilhon, Giselle M. S. P.; Muller, Adolfo H.; Secco, Ricardo De S.; Peris, Gabriel; Llusar, Rosa

    Cordatin is a furan diterpenoid with a clerodane skeleton isolated from Croton palanostigma Klotzsch (Euphorbiaceae). This natural product shows significant antiulcerogenic activity, similar to cimetidine (Tagamet®), a compound used for the treatment of peptic ulcers. The crystal structure of cordatin was obtained by X-ray diffraction and its geometrical parameters were compared with theoretical calculations at the B3LYP theory level. The IR and NMR (1H and 13C chemical shifts and coupling constants) spectra were obtained and compared with the theoretical calculations. The B3LYP theory level, with the 6-31G(d,p) and 6-311G(d,p) basis set, provided IR absorption values close to the experimental data. Moreover, theoretical NMR parameters obtained in both gas phase and chloroform solvent at the B3PW91/DGDZVP, B3LYP/6-311+G(2d,p), and B3PW91/6-311+G(2d,p) levels showed good correlations with the experimental results.

  11. Effect of solvent on absorption spectra of all-trans-{beta}-carotene under high pressure

    SciTech Connect

    Liu, W. L.; Zheng, Z. R.; Liu, Z. G.; Zhu, R. B.; Wu, W. Z.; Li, A. H.; Yang, Y. Q.; Dai, Z. F.; Su, W. H.

    2008-03-28

    The absorption spectra of all-trans-{beta}-carotene in n-hexane and carbon disulfide (CS{sub 2}) solutions are measured under high pressure at ambient temperature. The common redshift and broadening in the spectra are observed. Simulation of the absorption spectra was performed by using the time-domain formula of the stochastic model. The pressure dependence of the 0-0 band wavenumber is in agreement with the Bayliss theory at pressure higher than 0.2 GPa. The deviation of the linearity at lower pressure is ascribed to the reorientation of the solvent molecules. Both the redshift and broadening are stronger in CS{sub 2} than that in n-hexane because of the more sensitive pressure dependence of dispersive interactions in CS{sub 2} solution. The effect of pressure on the transition moment is explained with the aid of a simple model involving the relative dimension, location, and orientation of the solute and solvent molecules. The implication of these results for light-harvesting functions of carotenoids in photosynthesis is also discussed.

  12. Measurability of Kinetic Temperature from Metal Absorption-Line Spectra Formed in Chaotic Media

    NASA Astrophysics Data System (ADS)

    Levshakov, Sergei A.; Takahara, Fumio; Agafonova, Irina I.

    1999-06-01

    We present a new method for recovering the kinetic temperature of the intervening diffuse gas to an accuracy of 10%. The method is based on the comparison of unsaturated absorption-line profiles of two species with different atomic weights. The species are assumed to have the same temperature and bulk motion within the absorbing region. The computational technique involves the Fourier transform of the absorption profiles and the consequent entropy-regularized χ2-minimization (ERM) to estimate the model parameters. The procedure is tested using synthetic spectra of C+, Si+, and Fe+ ions. The comparison with the standard Voigt fitting analysis is performed, and it is shown that the Voigt deconvolution of the complex absorption-line profiles may result in estimated temperatures that are not physical. We also successfully analyze Keck telescope spectra of C II λ1334 and Si II λ1260 lines observed at the redshift z=3.572 toward the quasar Q1937-1009 by Tytler et al. Based in part on data obtained at the W. M. Keck Observatory, which is jointly operated by the University of California and the California Institute of Technology.

  13. Effects of Spectralon absorption on reflectance spectra of typical planetary surface analog materials.

    PubMed

    Zhang, Hao; Yang, Yazhou; Jin, Weidong; Liu, Chujian; Hsu, Weibiao

    2014-09-01

    Acquiring accurate visible and near-infrared (VisNIR) reflectance values of atmosphereless celestial bodies is very important in inferring the physical and geological properties of their surficial materials. When a calibration target with inherent non-trivial absorption features is used, the calibrated reflectance would essentially always contain spurious spectral features and the spectroscopic data may easily be misinterpreted if the artifact is not properly taken care of. We demonstrate with laboratory reflectance measurements that the VisNIR spectra of three typical planetary surface analog materials, lunar simulant JSC-1A, olivine and pyroxene grains, have an artificial peak at 2.1 µm when Spectralon-type plaque made of polytetrafluoroethylene is used as the calibration target in the NIR region. The degree of severity of this artifact is dependent on the strength of the 2.0 µm absorption feature of the mineral. Empirical methods are proposed to remove this artifact to bring the spectra close to that calibrated by a gold mirror which does not have any conspicuous absorption features in the NIR region. The correction methods may be applied to reflectance data acquired by the VisNIR imaging spectrometer onboard the Yutu Rover of the Chinese Chang'E 3 lunar mission which employed an onboard Spectralon-type calibration target. PMID:25321507

  14. Effects of Spectralon absorption on reflectance spectra of typical planetary surface analog materials.

    PubMed

    Zhang, Hao; Yang, Yazhou; Jin, Weidong; Liu, Chujian; Hsu, Weibiao

    2014-09-01

    Acquiring accurate visible and near-infrared (VisNIR) reflectance values of atmosphereless celestial bodies is very important in inferring the physical and geological properties of their surficial materials. When a calibration target with inherent non-trivial absorption features is used, the calibrated reflectance would essentially always contain spurious spectral features and the spectroscopic data may easily be misinterpreted if the artifact is not properly taken care of. We demonstrate with laboratory reflectance measurements that the VisNIR spectra of three typical planetary surface analog materials, lunar simulant JSC-1A, olivine and pyroxene grains, have an artificial peak at 2.1 µm when Spectralon-type plaque made of polytetrafluoroethylene is used as the calibration target in the NIR region. The degree of severity of this artifact is dependent on the strength of the 2.0 µm absorption feature of the mineral. Empirical methods are proposed to remove this artifact to bring the spectra close to that calibrated by a gold mirror which does not have any conspicuous absorption features in the NIR region. The correction methods may be applied to reflectance data acquired by the VisNIR imaging spectrometer onboard the Yutu Rover of the Chinese Chang'E 3 lunar mission which employed an onboard Spectralon-type calibration target.

  15. Systematic trend of water vapour absorption in red giant atmospheres revealed by high resolution TEXES 12 μm spectra

    NASA Astrophysics Data System (ADS)

    Ryde, N.; Lambert, J.; Farzone, M.; Richter, M. J.; Josselin, E.; Harper, G. M.; Eriksson, K.; Greathouse, T. K.

    2015-01-01

    Context. The structures of the outer atmospheres of red giants are very complex. Recent interpretations of a range of different observations have led to contradictory views of these regions. It is clear, however, that classical model photospheres are inadequate to describe the nature of the outer atmospheres. The notion of large optically thick molecular spheres around the stars (MOLspheres) has been invoked in order to explain spectro-interferometric observations and low- and high-resolution spectra. On the other hand high-resolution spectra in the mid-IR do not easily fit into this picture because they rule out any large sphere of water vapour in LTE surrounding red giants. Aims: In order to approach a unified scenario for these outer regions of red giants, more empirical evidence from different diagnostics are needed. Our aim here is to investigate high-resolution, mid-IR spectra for a range of red giants, spanning spectral types from early K to mid M. We want to study how the pure rotational lines of water vapour change with effective temperature, and whether we can find common properties that can put new constraints on the modelling of these regions, so that we can gain new insights. Methods: We have recorded mid-IR spectra at 12.2 - 12.4 μm at high spectral resolution of ten well-studied bright red giants, with TEXES mounted on the IRTF on Mauna Kea. These stars span effective temperatures from 3450 K to 4850 K. Results: We find that all red giants in our study cooler than 4300 K, spanning a wide range of effective temperatures (down to 3450 K), show water absorption lines stronger than expected and none are detected in emission, in line with what has been previously observed for a few stars. The strengths of the lines vary smoothly with spectral type. We identify several spectral features in the wavelength region that are undoubtedly formed in the photosphere. From a study of water-line ratios of the stars, we find that the excitation temperatures, in the

  16. Time-dependent fifth-order bands in nominally third-order 2D IR vibrational echo spectra.

    PubMed

    Thielges, Megan C; Fayer, Michael D

    2011-09-01

    Progress in the field of 2D IR vibrational spectroscopy has been bolstered by the production of intense mid-IR laser pulses. As higher-energy pulses are employed, a concomitant increase occurs in the likelihood of fifth-order contributions to the 2D IR spectra. We report the appearance of fifth-order signals in 2D IR spectra of CO bound to the active site of the enzyme cytochrome P450(cam) with the substrate norcamphor. Two bands with novel time dependences, one on the diagonal and one off-diagonal, are not accounted for by normal third-order interactions. These bands are associated with a ν = 1-2 vibrational transition frequency. Both bands decay to 0 and then grow back in with opposite sign. The diagonal band is positive at short time, decays to 0, reappears with negative sign, before eventually decaying to 0. The off-diagonal band is negative at short time, decays to 0, reappears positive, and then decays to 0. The appearance and time dependence of these bands are characterized. Understanding these fifth-order bands is useful because they may be misidentified with time-dependent bands that arise from other processes, such as chemical exchange, vibrational coupling, or energy transfer. The presence and unusual time dependences of the fifth-order bands are reproduced with model calculations that account for the fact that vibrational relaxation from the ν = 2 to 1 level is approximately a factor of 2 faster than that from the ν = 1 to 0 level.

  17. FT-IR Spectra And Normal Vibrational Analysis Of Bilirubin IX α

    NASA Astrophysics Data System (ADS)

    Wang, Xiu-Zhen; Soloway, Roger D.; Wu, Jin-Guang; Yu, Bao-Zhu; Xu, Guang-Xian

    1989-12-01

    Bilirubin (C33H36N406) is a water insoluble breakdown product of hemoglobin. It is of biological importance. For example, it can bind with calcium ions to form calcium bilirubinates which are major components in human pigment gallstones. The identification of IR bands of bilirubin are incomplete and the band assignments by different authors have not coincided.

  18. Distributed nerve gases sensor based on IR absorption in hollow optical fiber

    NASA Astrophysics Data System (ADS)

    Viola, R.; Liberatore, N.; Luciani, D.; Mengali, S.; Pierno, L.

    2010-10-01

    The Nerve gases are persistent gases that appear as very challenging menace in homeland security scenarios, due to the low pressure vapor at ambient temperature, and the very low lethal concentrations. A novel approach to the detection and identification of these very hazardous volatile compounds in large areas such as airports, underground stations, big events arenas, aimed to a high selectivity (Low false alarm probability), has been explored under the SENSEFIB Corporate Project of Finmeccanica S.p.A. The technical demonstrator under development within the Project is presented. It is based on distributed line sensors performing infrared absorption measurements to reveal even trace amounts of target compounds from the retrieval of their spectral fingerprint. The line sensor is essentially constituted by a widely tunable external cavity quantum cascade laser (EC-QCL), coupled to IR thermoelectrically cooled MCT fast detectors by means of a infrared hollow core fibers (HCF). The air is sampled through several micro-holes along the HCF, by means of a micropump, while the infrared radiation travels inside the fiber from the source to the detector, that are optically coupled with the opposite apertures of the HCF. The architecture of the sensor and its principle of operation, in order to cover large areas with a few line sensors instead of with a grid of many point sensors, are illustrated. The sensor is designed to use the HCF as an absorption cell, exploiting long path length and very small volume, (e.g fast response), at the same time. Furthermore the distributed sensor allows to cover large areas and/or not easily accessible locations, like air ducts, with a single line sensor by extending the HCF for several tens of meters. The main components implemented in the sensor are described, in particular: the EC-QCL source to span the spectral range of wavelength between 9.15um and 9.85um; and the hollow core fiber, exhibiting a suitably low optical loss in this spectral

  19. Coupled calculation of vibrational frequencies and intensities. Part VI. IR and Raman spectra of crotonaldehyde, methacrolein and methyl-vinylketone

    NASA Astrophysics Data System (ADS)

    Oelichmann, H.-J.; Bougeard, D.; Schrader, B.

    1981-12-01

    The vibrational spectra of trans-crotonaldehyde, methacrolein and methylvinylketone have been reinvestigated and the bands assigned. Normal coordinate analyses of these molecules based on the given assignments have been carried out in the valence force field approximation. A transferable force field for α, β-unsaturated aldehydes and ketones was obtained leading to good agreement between observed and calculated frequencies. The relative cartesian displacements of the atoms given in the L matrices were used to compute the IR and Raman intensities of each mode by a modified CNDO/2 procedure. The intensity calculations confirm the assignments and support the calculated force constants.

  20. First-principles calculation of ground and excited-state absorption spectra of ruby and alexandrite considering lattice relaxation

    NASA Astrophysics Data System (ADS)

    Watanabe, Shinta; Sasaki, Tomomi; Taniguchi, Rie; Ishii, Takugo; Ogasawara, Kazuyoshi

    2009-02-01

    We performed first-principles calculations of multiplet structures and the corresponding ground-state absorption and excited-state absorption spectra for ruby (Cr3+:α-Al2O3) and alexandrite (Cr3+:BeAl2O4) which included lattice relaxation. The lattice relaxation was estimated using the first-principles total energy and molecular-dynamics method of the CASTEP code. The multiplet structure and absorption spectra were calculated using the configuration-interaction method based on density-functional calculations. For both ruby and alexandrite, the theoretical absorption spectra, which were already in reasonable agreement with experimental spectra, were further improved by consideration of lattice relaxation. In the case of ruby, the peak positions and peak intensities were improved through the use of models with relaxations of 11 or more atoms. For alexandrite, the polarization dependence of the U band was significantly improved, even by a model with a relaxation of only seven atoms.

  1. Spectral investigations of 2,5-difluoroaniline by using mass, electronic absorption, NMR, and vibrational spectra

    NASA Astrophysics Data System (ADS)

    Kose, Etem; Karabacak, Mehmet; Bardak, Fehmi; Atac, Ahmet

    2016-11-01

    One of the most significant aromatic amines is aniline, a primary aromatic amine replacing one hydrogen atom of a benzene molecule with an amino group (NH2). This study reports experimental and theoretical investigation of 2,5-difluoroaniline molecule (2,5-DFA) by using mass, ultraviolet-visible (UV-vis), 1H and 13C nuclear magnetic resonance (NMR), Fourier transform infrared and Raman (FT-IR and FT-Raman) spectra, and supported with theoretical calculations. Mass spectrum (MS) of 2,5-DFA is presented with their stabilities. The UV-vis spectra of the molecule are recorded in the range of 190-400 nm in water and ethanol solvents. The 1H and 13C NMR chemical shifts are recorded in CDCl3 solution. The vibrational spectra are recorded in the region 4000-400 cm-1 (FT-IR) and 4000-10 cm-1 (FT-Raman), respectively. Theoretical studies are underpinned the experimental results as described below; 2,5-DFA molecule is optimized by using B3LYP/6-311++G(d,p) basis set. The mass spectrum is evaluated and possible fragmentations are proposed based on the stable structure. The electronic properties, such as excitation energies, oscillator strengths, wavelengths, frontier molecular orbitals (FMO), HOMO and LUMO energies, are determined by time-dependent density functional theory (TD-DFT). The electrostatic potential surface (ESPs), density of state (DOS) diagrams are also prepared and evaluated. In addition to these, reduced density gradient (RDG) analysis is performed, and thermodynamic features are carried out theoretically. The NMR spectra (1H and 13C) are calculated by using the gauge-invariant atomic orbital (GIAO) method. The vibrational spectra of 2,5-DFA molecule are obtained by using DFT/B3LYP method with 6-311++G(d,p) basis set. Fundamental vibrations are assigned based on the potential energy distribution (PED) of the vibrational modes. The nonlinear optical properties (NLO) are also investigated. The theoretical and experimental results give a detailed description of

  2. Pressure dependence of Hexanitrostilbene Raman/ electronic absorption spectra to validate DFT EOS

    NASA Astrophysics Data System (ADS)

    Farrow, Darcie; Alam, Kathleen; Martin, Laura; Fan, Hongyou; Kay, Jeffrey; Wixom, Ryan

    2015-06-01

    Due to its thermal stability and low vapor pressure, Hexanitrostilbene (HNS) is often used in high-temperature or vacuum applications as a detonator explosive or in mild detonating fuse. Toward improving the accuracy of the equation of state used in hydrodynamic simulations of the performance of HNS, we have measured the Raman and electronic absorption spectra of this material under static pressure in a diamond anvil cell. Density functional theory calculations were used to simulate the pressure dependence of the Raman/Electronic spectra along the Hugoniot and 300K isotherm for comparison and to aid in interpreting the data. We will discuss changes in the electronic structure of HNS under pressure, validation of a DFT predicted equation of state (EOS), and using this data as a basis for understanding future pulsed Raman measurements on dynamically compressed HNS samples.

  3. Solvatochromic behavior of the electronic absorption spectra of gallic acid and some of its azo derivatives

    NASA Astrophysics Data System (ADS)

    Masoud, Mamdouh S.; Hagagg, Sawsan S.; Ali, Alaa E.; Nasr, Nessma M.

    The electronic absorption spectra of gallic acid and its azo derivatives have been studied in various solvents of different polarities. Multiple regression techniques were applied to calculate the regression and correlation coefficients based on an equation that relates the wavenumbers of the absorption band maxima (υmax-) to the solvent parameters; refractive index (n), dielectric constant (D), empirical Kamlet-Taft solvent parameters, π*(dipolarity/polarizability), α (solvent hydrogen-bond donor acidity) and β (solvent hydrogen-bond acceptor basicity). The fitting coefficient obtained from this analysis allows estimating the contribution of each type of interactions relative to total spectral shifts in solution. The dependence of υmax- on the solvent parameters indicates that the obtained bands are affected by specific and non-specific solute-solvent interactions.

  4. Solvatochromic behavior of the electronic absorption spectra of gallic acid and some of its azo derivatives.

    PubMed

    Masoud, Mamdouh S; Hagagg, Sawsan S; Ali, Alaa E; Nasr, Nessma M

    2012-08-01

    The electronic absorption spectra of gallic acid and its azo derivatives have been studied in various solvents of different polarities. Multiple regression techniques were applied to calculate the regression and correlation coefficients based on an equation that relates the wavenumbers of the absorption band maxima (υ(max)(-)) to the solvent parameters; refractive index (n), dielectric constant (D), empirical Kamlet-Taft solvent parameters, π*(dipolarity/polarizability), α (solvent hydrogen-bond donor acidity) and β (solvent hydrogen-bond acceptor basicity). The fitting coefficient obtained from this analysis allows estimating the contribution of each type of interactions relative to total spectral shifts in solution. The dependence of υ(max)(-) on the solvent parameters indicates that the obtained bands are affected by specific and non-specific solute-solvent interactions.

  5. Index of Refraction and Absorption Coefficient Spectra of Paratellurite in the Terahertz Region

    NASA Astrophysics Data System (ADS)

    Unferdorben, Márta; Buzády, Andrea; Hebling, János; Kiss, Krisztián; Hajdara, Ivett; Kovács, László; Péter, Ágnes; Pálfalvi, László

    2016-07-01

    Index of refraction and absorption coefficient spectra of pure paratellurite (α-TeO2) crystal as a potential material for terahertz (THz) applications were determined in the 0.25-2 THz frequency range at room temperature by THz time domain spectroscopy (THz-TDS). The investigation was performed with beam polarization both parallel (extraordinary polarization) and perpendicular (ordinary polarization) to the optical axis [001] of the crystal. Similarly to the visible spectral range, positive birefringence was observed in the THz range as well. It was shown that the values of the refractive index for extraordinary polarization are higher and show significantly larger dispersion than for the ordinary one. The absorption coefficient values are also larger for extraordinary polarization. The measured values were fitted by theoretical curves derived from the complex dielectric function containing independent terms of Lorentz oscillators due to phonon-polariton resonances. The results are compared with earlier publications, and the observed significant discrepancies are discussed.

  6. Effects of domain size on x-ray absorption spectra of boron nitride doped graphenes

    NASA Astrophysics Data System (ADS)

    Li, Xin; Hua, Weijie; Wang, Bo-Yao; Pong, Way-Faung; Glans, Per-Anders; Guo, Jinghua; Luo, Yi

    2016-08-01

    Doping is an efficient way to open the zero band gap of graphene. The control of the dopant domain size allows us to tailor the electronic structure and the properties of the graphene. We have studied the electronic structure of boron nitride doped graphenes with different domain sizes by simulating their near-edge X-ray absorption fine structure (NEXAFS) spectra at the N K-edge. Six different doping configurations (five quantum dot type and one phase-separated zigzag-edged type) were chosen, and N K-edge NEXAFS spectra were calculated with large truncated cluster models by using the density functional theory with hybrid functional and the equivalent core hole approximation. The opening of the band gap as a function of the domain size is revealed. We found that nitrogens in the dopant boundary contribute a weaker, red-shifted π* peak in the spectra as compared to those in the dopant domain center. The shift is related to the fact that these interfacial nitrogens dominate the lowest conduction band of the system. Upon increasing the domain size, the ratio of interfacial atom decreases, which leads to a blue shift of the π* peak in the total NEXAFS spectra. The spectral evolution agrees well with experiments measured at different BN-dopant concentrations and approaches to that of a pristine h-BN sheet.

  7. Appraisal of Surface Hopping as a Tool for Modeling Condensed Phase Linear Absorption Spectra.

    PubMed

    Petit, Andrew S; Subotnik, Joseph E

    2015-09-01

    Whereas surface hopping is usually used to study populations and mean-field dynamics to study coherences, in two recent papers, we described a procedure for calculating dipole-dipole correlation functions (and therefore absorption spectra) directly from ensembles of surface hopping trajectories. We previously applied this method to a handful of one-dimensional model problems intended to mimic the gas phase. In this article, we now benchmark this new procedure on a set of multidimensional model problems intended to mimic the condensed phase and compare our results against other standard semiclassical methods. By comparison, we demonstrate that methods that include only dynamical information from one PES (the standard Kubo approaches) exhibit large discrepancies with the results of exact quantum dynamics. Furthermore, for model problems with nonadiabatic excited state dynamics but no quantized vibrational structure in the spectra, our surface hopping approach performs comparably to using Ehrenfest dynamics to calculate the electronic coherences. That being said, however, when quantized vibrational structures are present in the spectra but the electronic states are uncoupled, performing the dynamics on the mean PES still outperforms our present method. These benchmark results should influence future studies that use ensembles of independent semiclassical trajectories to model linear as well as multidimensional spectra in the condensed phase.

  8. Biological oxygen sensing via two-photon absorption by an Ir(III) complex using a femtosecond fiber laser

    NASA Astrophysics Data System (ADS)

    Moritomo, Hiroki; Fujii, Akinari; Suzuki, Yasutaka; Yoshihara, Toshitada; Tobita, Seiji; Kawamata, Jun

    2016-09-01

    Near-infrared two-photon absorption of the phosphorescent Ir(III) complex (2,4-pentanedionato-κO 2,κO 4)bis[2-(6-phenanthridinyl-κN)benzo[b]thien-3-yl-κC]iridium (BTPHSA) was characterized. It exhibited a 800-1200 nm two-photon absorption band, and thus could be electronically excited by 1030-nm femtosecond Ti:sapphire and Yb-doped fiber lasers. By using BTPHSA, oxygen concentrations in human embryonic kidney 293 (HEK293) cells were imaged. These results demonstrate two-photon oxygen sensing of live tissues via easily operable excitation sources.

  9. Biological oxygen sensing via two-photon absorption by an Ir(III) complex using a femtosecond fiber laser

    NASA Astrophysics Data System (ADS)

    Moritomo, Hiroki; Fujii, Akinari; Suzuki, Yasutaka; Yoshihara, Toshitada; Tobita, Seiji; Kawamata, Jun

    2016-09-01

    Near-infrared two-photon absorption of the phosphorescent Ir(III) complex (2,4-pentanedionato-κO 2,κO 4)bis[2-(6-phenanthridinyl-κN)benzo[b]thien-3-yl-κC]iridium (BTPHSA) was characterized. It exhibited a 800–1200 nm two-photon absorption band, and thus could be electronically excited by 1030-nm femtosecond Ti:sapphire and Yb-doped fiber lasers. By using BTPHSA, oxygen concentrations in human embryonic kidney 293 (HEK293) cells were imaged. These results demonstrate two-photon oxygen sensing of live tissues via easily operable excitation sources.

  10. Solvent effects on the S0 →S2 absorption spectra of β-carotene

    NASA Astrophysics Data System (ADS)

    Liu, Wei-Long; Wang, De-Min; Zheng, Zhi-Ren; Li, Ai-Hua; Su, Wen-Hui

    2010-01-01

    Absorption spectra of β-carotene in 31 solvents are measured in ambient conditions. Solvent effects on the 0-0 band energy, the bandwidth, and the transition moment of the S0 → S2 transition are analysed. The discrepancies between published results of the solvent effects on the 0-0 band energy are explained by taking into account microscopic solute-solvent interactions. The contributions of polarity and polarizability of solvents to 0-0 band energy and bandwidth are quantitatively distinguished. The 0-0 transition energy of the S2 state at the gas phase is predicted to locate between 23000 and 23600 cm-1.

  11. Electronic properties and absorption spectra of ZnSnP2 using mBJ potential

    NASA Astrophysics Data System (ADS)

    Joshi, Ritu; Ahuja, B. L.

    2015-06-01

    We present the energy bands and density of states of ZnSnP2 using full potential linearized augmented plane wave method with modified Becke Johnson potential. It is found that this compound has a direct band gap of about 2.01 eV at Γ point, which originates from the energy difference between P-3p and Sn-5s states. In addition, we have also calculated absorption spectra in the solar energy range and compared it with that of bulk Si to explore the applicability of ZnSnP2 in photovoltaic and optoelectronic devices.

  12. Decay heat and anti-neutrino energy spectra in fission fragments from total absorption spectroscopy

    NASA Astrophysics Data System (ADS)

    Rykaczewski, Krzysztof

    2015-10-01

    Decay studies of over forty 238U fission products have been studied using ORNL's Modular Total Absorption Spectrometer. The results are showing increased decay heat values, by 10% to 50%, and the energy spectra of anti-neutrinos shifted towards lower energies. The latter effect is resulting in a reduced number of anti-neutrinos interacting with matter, often by tens of percent per fission product. The results for several studied nuclei will be presented and their impact on decay heat pattern in power reactors and reactor anti-neutrino physics will be discussed.

  13. On Different Absorption Components in the X-ray Spectra of the Intermediate Polar Systems

    NASA Astrophysics Data System (ADS)

    Balman, S.; Okcu, B.

    2014-07-01

    We present orbital phase-resolved spectroscopy of the Intermediate polars (IP) AO Psc, HT Cam, V1223 Sgr and XSS J0056+4548 using the XMM-Newton EPIC pn data. We detect increase of absorption by neutral hydrogen column density N_{H} during the phases corresponding to the orbital minima in a range ˜ (1.0-2.0)× 10^{22} cm^{-2}. AO Psc indicates spectral hardening in the soft plasma emission component. HT Cam, reveals an increase of N_{H} at the orbital minimum from 0.05× 10^{22} cm^{-2} to 0.13× 10^{22} cm^{-2}. These high N_{H} values are most likely a result of absorption by the bulge material at the accretion impact zone. We discuss implications of this interms of warmabsorbers in IPs and bulge temperatures. The four IPs reveal a second high absorption component that is constant over the orbital phase in a range (5.0-11.0)× 10^{22} cm^{-2}. We attribute this component to the accretion column/curtain. These results are in accordance with the orbital phase-resolved analysis presented in Pekon & Balman (2011) for EX Hya and (2012) for FO Aqr. We strongly suggest that absorption by the bulge at the accretion impact zone is a distinct component in the IP X-ray spectra.

  14. Galactic Soft X-ray Emission Revealed with Spectroscopic Study of Absorption and Emission Spectra

    NASA Astrophysics Data System (ADS)

    Yamasaki, Noriko Y.; Mitsuda, K.; Takei, Y.; Hagihara, T.; Yoshino, T.; Wang, Q. D.; Yao, Y.; McCammon, D.

    2010-03-01

    Spectroscopic study of Oxygen emission/absorption lines is a new tool to investigate the nature of the soft X-ray background. We investigated the emission spectra of 14 fields obtained by Suzaku, and detected OVII and OVIII lines separately. There is an almost isotropic OVII line emission with 2 LU intensity. As the attenuation length in the Galactic plane for that energy is short, that OVII emission should arise within 300 pc of our neighborhood. In comparison with the estimated emission measure for the local bubble, the most plausible origin of this component is the solar wind charge exchange with local interstellar materials. Another component presented from the correlation between the OVII and OVIII line intensity is a thermal emission with an apparent temperature of 0.2 keV with a field-to-field fluctuation of 10% in temperature, while the intensity varies about a factor of 4. By the combination analysis of the emission and the absorption spectra, we can investigate the density and the scale length of intervening plasma separately. We analyzed the Chanrdra grating spectra of LMC X-3 and PKS 2155-304, and emission spectra toward the line of sight by Suzaku. In both cases, the combined analysis showed that the hot plasma is not iso-thermal nor uniform. Assuming an exponential disk distribution, the thickness of the disk is as large as a few kpc. It suggests that there is a thick hot disk or hot halo surrounding our Galaxy, which is similar to X-ray hot haloes around several spiral galaxies.

  15. Modeling the absorption spectra of Er3+ and Yb3+ in a phosphate glass

    NASA Astrophysics Data System (ADS)

    Gruber, John B.; Sardar, Dhiraj K.; Zandi, Bahram; Hutchinson, J. Andrew; Trussell, C. Ward

    2003-10-01

    Absorption spectra of Er3+ and Yb3+ ions, codopants in a phosphate glass, are reported at 8 K and at wavelengths between 350 and 1600 nm. Detailed structure appearing in the spectra, associated with individual multiplet states, 2S+1LJ, of Er3+(4f11) and Yb3+(4f13) is interpreted using a ligand-field coordination sphere model to characterize the microscopic environment surrounding the rare earth ions in multiple sites. Inhomogeneous broadening of the spectra is likely due to different configurations of PO4 tetrahedra clustered about a caged rare earth ion in the amorphous host. Similarity between the Er3+ spectrum in the glass and in the spectrum of single-crystal LiErP4O12, where Er3+ occupies sites of C2 symmetry, suggests that an averaged site symmetry of C2 is a reasonable approximation for Er3+ and Yb3+ ions in the phosphate glass. Calculated splitting of multiplet states by the ligand-field cluster model are compared with energy levels derived from the observed absorption peaks and well-defined shoulders. Inhomogeneous broadening of the spectra limit the precision in establishing the energy of the multiplet splittings, but the analysis is useful for modeling studies of the Er:Yb:phosphate glass as an eye-safe laser (1.53 μm). The splitting of the Yb3+(4f13)2FJ states is determined using parameters obtained from the Er3+ set by means of the three-parameter theory. No adjustments were made to the Yb3+ parameters that predict multiplet splittings in reasonable agreement with experimental data.

  16. Determination of phosphorus using high-resolution diphosphorus molecular absorption spectra produced in the graphite furnace

    NASA Astrophysics Data System (ADS)

    Huang, Mao Dong; Becker-Ross, Helmut; Okruss, Michael; Geisler, Sebastian; Florek, Stefan

    2016-01-01

    Molecular absorption of diphosphorus was produced in a graphite furnace and evaluated in view of its suitability for phosphorus determination. Measurements were performed with two different high-resolution continuum source absorption spectrometers. The first system is a newly in-house developed simultaneous broad-range spectrograph, which was mainly used for recording overview absorption spectra of P2 between 193 nm and 245 nm. The region covers the main part of the C 1Σu+ ← X 1Σg+ electronic transition and shows a complex structure with many vibrational bands, each consisting of a multitude of sharp rotational lines. With the help of molecular data available for P2, an assignment of the vibrational bands was possible and the rotational structure could be compared with simulated spectra. The second system is a commercial sequential continuum source spectrometer, which was used for the basic analytical measurements. The P2 rotational line at 204.205 nm was selected and systematically evaluated with regard to phosphorus determination. The conditions for P2 generation were optimized and it was found that the combination of a ZrC modified graphite tube and borate as a chemical modifier were essential for a good production of P2. Serious interferences were found in the case of nitrate and sulfuric acid, although the nitrate interference can be eliminated by a higher pyrolysis temperature. The reliability of the method was proved by analysis of certified samples. Using standard tubes, a characteristic mass of 10 ng and a limit of detection of 7 ng were found. The values could further be improved by a factor of ten using a miniaturized tube with an internal diameter of 2 mm. Compared to the conventional method based on the phosphorus absorption line at 213.618 nm, the advantages of using P2 are the gentle temperature conditions and the potential of performing a simultaneous multi-line evaluation to further improve the limit of detection.

  17. Decoding IR Spectra of Cosmic Ices and Organics in the Laboratory

    NASA Technical Reports Server (NTRS)

    Allamandola, Louis J.

    2006-01-01

    Tremendous strides have been made in our understanding of interstellar material over the past twenty-five years thanks to significant developments in observational IR astronomy and dedicated laboratory experiments. Twenty-five years ago the composition of interstellar dust was largely guessed at. Today the composition of interstellar dust is reasonably well understood. In the diffuse interstellar medium (ISM) the dust population is mainly comprised of small grains of silicates and amorphous carbon. In dark molecular clouds, the birthplace of stars and planets, these cold refractory dust particles are coated with mixed molecular ices whose composition is reasonably well constrained. Lastly, the signature of carbon-rich polycyclic aromatic hydrocarbons (PAHs), shockingly large molecules by early interstellar chemistry standards, is widespread throughout the Universe. This extraordinary progress has been made possible by the close collaboration of laboratory experimentalists and theoreticians with IR astronomers using groundbased, air-borne, and orbiting telescopes.

  18. 2D IR spectra of cyanide in water investigated by molecular dynamics simulations

    USGS Publications Warehouse

    Lee, Myung Won; Carr, Joshua K.; Göllner, Michael; Hamm, Peter; Meuwly, Markus

    2013-01-01

    Using classical molecular dynamics simulations, the 2D infrared (IR) spectroscopy of CN− solvated in D2O is investigated. Depending on the force field parametrizations, most of which are based on multipolar interactions for the CN− molecule, the frequency-frequency correlation function and observables computed from it differ. Most notably, models based on multipoles for CN− and TIP3P for water yield quantitatively correct results when compared with experiments. Furthermore, the recent finding that T 1 times are sensitive to the van der Waals ranges on the CN− is confirmed in the present study. For the linear IR spectrum, the best model reproduces the full widths at half maximum almost quantitatively (13.0 cm−1 vs. 14.9 cm−1) if the rotational contribution to the linewidth is included. Without the rotational contribution, the lines are too narrow by about a factor of two, which agrees with Raman and IR experiments. The computed and experimental tilt angles (or nodal slopes) α as a function of the 2D IR waiting time compare favorably with the measured ones and the frequency fluctuation correlation function is invariably found to contain three time scales: a sub-ps, 1 ps, and one on the 10-ps time scale. These time scales are discussed in terms of the structural dynamics of the surrounding solvent and it is found that the longest time scale (≈10 ps) most likely corresponds to solvent exchange between the first and second solvation shell, in agreement with interpretations from nuclear magnetic resonance measurements.

  19. X-ray absorption and infrared spectra of water and ice: A first-principles electronic structure study

    NASA Astrophysics Data System (ADS)

    Chen, Wei

    Water is of essential importance for chemistry and biology, yet the physics concerning many of its distinctive properties is not well known. In this thesis we present a theoretical study of the x-ray absorption (XA) and infrared (IR) spectra of water in liquid and solid phase. Our theoretical tools are the density functional theory (DFT), Car-Parrinello (CP) molecular dynamics (MD), and the so-called GW method. Since a systematic review of these ab initio methods is not the task of this thesis, we only briefly recall the main concepts of these methods as needed in the course of our exposition. The focus is, instead, an investigation of what is the important physics necessary for a better description of these excitation processes, in particular, core electron excitations (in XA) that reveal the local electronic structure, and vibrational excitations (in IR) associated to the molecular dynamics. The most interesting question we are trying to answer is: as we include better approximations and more complete physical descriptions of these processes, how do the aforementioned spectra reflect the underlying hydrogen-bonding network of water? The first part of this thesis consists of the first four chapters, which focus on the study of core level excitation of water and ice. The x-ray absorption spectra of water and ice are calculated with a many-body approach for electron-hole excitations. The experimental features, even the small effects of a temperature change in the liquid, are reproduced with quantitative detail using molecular configurations generated by ab initio molecular dynamics. We find that the spectral shape is controlled by two major modifications of the short range order that mark the transition from ice to water. One is associated to dynamic breaking of the hydrogen bonds which leads to a strong enhancement of the pre-edge intensity in the liquid. The other is due to densification, which follows the partial collapse of the hydrogen bond network and is

  20. Mineral Specific IR Molar Absorption Coefficients for Routine Water Determination in Olivine, SiO2 polymorphs and Garnet

    NASA Astrophysics Data System (ADS)

    Thomas, S.; Koch-Mueller, M.; Reichart, P.; Rhede, D.; Thomas, R.

    2007-12-01

    Conventionally applied Infrared (IR) calibrations [1, 2] for quantitative water analyses in solids are established on hydrous minerals and glasses with several wt% water. These calibrations are based on a negative correlation between the IR molar absorption coefficient (ɛ) for water and the mean wavenumber of the corresponding OH pattern. The correlation reflects the dependence of the OH band position on the appropriate O- H...O distances and thereby the magnitude of the dipole momentum which is proportional to the band intensity. However, it has been observed that these calibrations can not be adopted to nominally anhydrous minerals (NAMs) [3].To study the potential dependence of ɛ on structure and chemistry in NAMs we synthesized olivine and SiO2 polymorphs with specific isolated hydroxyl point defects, e.g. quartz, coesite and stishovite with B3++H+=Si4+ and/or Al3++H+=Si4+ substitutions. Experiments were performed with water in excess in piston cylinder and multi-anvil presses. Single crystal IR spectra demonstrate that we successfully managed to seperate generally complex OH patterns as e.g. observed in natural quartz and synthetic coesite. We quantified sample water contents of both natural samples and our run products by applying proton-proton-scattering [4], confocal microRaman spectroscopy [5] and Secondary Ion mass spectrometry. Resulting water concentrations were used to calculate new mineral specific ɛs. For olivine with the mean wavenumber of 3517 cm-1 we determined an ɛ value of 41,000±5,000 lmol-1H2Ocm-2. Quantification of olivine with the mean wavenumber of 3550 cm-1 in contrast resulted in an ɛ value of 47,000±1,000 lmol-1H2Ocm-2. Taking into account previous studies [6, 7] there is evidence to suggest a linear wavenumber dependent correlation for olivine, where ɛ increases with decreasing wavenumber. In case of the SiO2 system it turns out that the magnitude of ɛ within one structure type is independent of the liable OH point defect and

  1. Studying basalts spectra in the VNIR and MidIR: what we could learn integrating data from VIHI and MERTIS the spectrometers onboard BepiColombo

    NASA Astrophysics Data System (ADS)

    Carli, C.; Capaccioni, F.; Maturilli, A.; Ammannito, E.; Ferrari, S.; Nestola, F.; Helbert, J.; Massironi, M.; Sgavetti, M.; Serventi, G.

    2012-04-01

    The first orbit data of the MESSENGER (NASA) mission revealed several volcanic features, confirming that volcanism was important in shaping the surface of Mercury. Some northern plains show characteristics typical of a flood-basalt style (Head et al.,2011), also consistent with x-ray spectrometer data that suggest possibly surface compositions between basalts and komatiites with high Mg/Si ratio and possibly low-iron content (Nittler et al.,2011). Multispectral images and VNIR spectroscopy indicate differences in albedo and spectral slopes, but no iron-bearing silicate absorptions, suggesting also a low-iron surface composition with lateral and vertical heterogeneities (Izenberg et al.,2009; Denevi et al.,2009). The surface composition of Mercury is still an open issue. In particular the large range in diurnal temperatures from -173 to 430°C is expected to affect the physical processes responsible for the spectral features of minerals and rocks. Helbert and Maturilli (2009) highlighted that the spectra of a labradorite sample show significant changes in spectral features in the mid-infrared with changing temperature. This result suggests that the surface temperature and the thermal history of an observed area must be taken into account in the interpretation of the spectra from an extreme planet such as Mercury. The following BepiColombo mission (ESA and JAXA joint project) will analyze the surface's reflectance in the range from 0.4 to 2.0 µm (VIHI) and the emissivity from 7 to 14 µm (MERTIS) (Helbert et al.,2005; Flamini et al.,2010). Here we describe an integrated approach aimed at the spectral characterization of basalts in VNIR reflectance and in the MidIR emissivity, trough accurately inter-calibrated data from different laboratories. We report the preliminary results of a study focused on two basaltic samples from an Etna lava flow with similar compositions and mineral phases associations, but different textures, with different degrees of crystallinity

  2. Identifying Student and Teacher Difficulties in Interpreting Atomic Spectra Using a Quantum Model of Emission and Absorption of Radiation

    ERIC Educational Resources Information Center

    Savall-Alemany, Francisco; Domènech-Blanco, Josep Lluís; Guisasola, Jenaro; Martínez-Torregrosa, Joaquín

    2016-01-01

    Our study sets out to identify the difficulties that high school students, teachers, and university students encounter when trying to explain atomic spectra. To do so, we identify the key concepts that any quantum model for the emission and absorption of electromagnetic radiation must include to account for the gas spectra and we then design two…

  3. Aprotic solvents effect on the UV-visible absorption spectra of bixin

    NASA Astrophysics Data System (ADS)

    Rahmalia, Winda; Fabre, Jean-François; Usman, Thamrin; Mouloungui, Zéphirin

    2014-10-01

    We describe here the effects of aprotic solvents on the spectroscopic characteristics of bixin. Bixin was dissolved in dimethyl sulfoxide, acetone, dichloromethane, ethyl acetate, chloroform, dimethyl carbonate, cyclohexane and hexane, separately, and its spectra in the resulting solutions were determined by UV-visible spectrophotometry at normal pressure and room temperature. We analyzed the effect of aprotic solvents on λmax according to Onsager cavity model and Hansen theory, and determined the approximate absorption coefficient with the Beer-Lambert law. We found that the UV-visible absorption spectra of bixin were found to be solvent dependent. The S0 → S2 transition energy of bixin in solution was dependent principally on the refractive index of the solvents and the bixin-solvent dispersion interaction. There was a small influence of the solvents dielectric constant, permanent dipole interaction and hydrogen bonding occurred between bixin and solvents. The absorbance of bixin in various solvents, with the exception of hexane, increased linearly with concentration.

  4. Aprotic solvents effect on the UV-visible absorption spectra of bixin.

    PubMed

    Rahmalia, Winda; Fabre, Jean-François; Usman, Thamrin; Mouloungui, Zéphirin

    2014-10-15

    We describe here the effects of aprotic solvents on the spectroscopic characteristics of bixin. Bixin was dissolved in dimethyl sulfoxide, acetone, dichloromethane, ethyl acetate, chloroform, dimethyl carbonate, cyclohexane and hexane, separately, and its spectra in the resulting solutions were determined by UV-visible spectrophotometry at normal pressure and room temperature. We analyzed the effect of aprotic solvents on λmax according to Onsager cavity model and Hansen theory, and determined the approximate absorption coefficient with the Beer-Lambert law. We found that the UV-visible absorption spectra of bixin were found to be solvent dependent. The S0→S2 transition energy of bixin in solution was dependent principally on the refractive index of the solvents and the bixin-solvent dispersion interaction. There was a small influence of the solvents dielectric constant, permanent dipole interaction and hydrogen bonding occurred between bixin and solvents. The absorbance of bixin in various solvents, with the exception of hexane, increased linearly with concentration. PMID:24840486

  5. Two-photon fluorescence absorption and emission spectra of dyes relevant for cell imaging.

    PubMed

    Bestvater, F; Spiess, E; Stobrawa, G; Hacker, M; Feurer, T; Porwol, T; Berchner-Pfannschmidt, U; Wotzlaw, C; Acker, H

    2002-11-01

    Two-photon absorption and emission spectra for fluorophores relevant in cell imaging were measured using a 45 fs Ti:sapphire laser, a continuously tuneable optical parametric amplifier for the excitation range 580-1150 nm and an optical multichannel analyser. The measurements included DNA stains, fluorescent dyes coupled to antibodies as well as organelle trackers, e.g. Alexa and Bodipy dyes, Cy2, Cy3, DAPI, Hoechst 33342, propidium iodide, FITC and rhodamine. In accordance with the two-photon excitation theory, the majority of the investigated fluorochromes did not reveal significant discrepancies between the two-photon and the one-photon emission spectra. However, a blue-shift of the absorption maxima ranging from a few nanometres up to considerably differing courses of the spectrum was found for most fluorochromes. The potential of non-linear laser scanning fluorescence microscopy is demonstrated here by visualizing multiple intracellular structures in living cells. Combined with 3D reconstruction techniques, this approach gives a deeper insight into the spatial relationships of subcellular organelles. PMID:12423261

  6. Removal of Mars atmospheric gas absorption from Phobos-2/ISM spectra

    NASA Astrophysics Data System (ADS)

    Castronuovo, M. M.; Ulivieri, C.

    Infrared imaging spectrometer (ISM) is an imaging spectrometer in the range of the near infrared that flew onboard of Soviet probe Phobos 2 in 1989. Its first objective was to obtain information about the mineralogic composition of the soil of Mars and its satellite Phobos, and about the spatial and temporal variability of the Martian atmosphere. In the spectral range of the instrument 0.76-3.16 microns, the radiation emerging from Mars' atmosphere is almost entirely due to the solar radiation reflected by the soil. Therefore, independent knowledge of the spectral transmittance of the atmosphere allows us to eliminate the atmospheric effect from the ISM data and so to obtain the spectral signature of the planet soil. In the present work the Martian atmospheric transmittance has been computed using FASCODE and the spectral lines atlas HITRAN of AFGL. The atmospheric profile has been defined on the basis of the work of Moroz et al. Then, the convolution of the computed transmittance with the response functions of ISM has been carried out to obtain the atmospheric absorption from the measurements it is necessary to renormalize the transmittance computed with FASCODE so that the depth of the absorption bands is the same as that of the bands measured by ISM. Finally, dividing the measured spectra by the computed ones we obtain the spectra signature of Martian soil from which it is possible to deduce the mineralogical composition of the observed zones.

  7. Absorption spectra of e-beam-excited Ne, Ar, and Kr, pure and in binary mixtures.

    PubMed

    Levchenko, A O; Ustinovskii, N N; Zvorykin, V D

    2010-10-21

    A technique using the broadband emission of a laser plume as probe radiation is applied to record UV-visible (190-510 nm) absorption spectra of Ne, Ar, and Kr, pure and in binary mixtures under moderate e-beam excitation up to 1 MW/cm(3). In all the rare gases and mixtures, the absorption spectra show continuum related to Rg(2) (+) homonuclear ions [peaking at λ∼285, 295, and 320 nm in Ne, Ar, and Kr(Ar/Kr), respectively] and a number of atomic lines related mainly to Rg(∗)(ms) levels, where m is the lowest principal quantum number of the valence electron. In argon, a continuum related to Ar(2) (∗) (λ∼325 nm) is also recorded. There are also trains of narrow bands corresponding to Rg(2) (∗)(npπ (3)Π(g))←Rg(2) (∗)(msσ (3)Σ(u) (+)) transitions. All the spectral features mentioned above were reported in literature but have never been observed simultaneously. Although charge transfer to a homonuclear ion of the heavier additive is commonly believed to dominate in binary rare-gas mixtures, it is found in this study that in Ne/Kr mixture, the charge is finally transferred from the buffer gas Ne(2) (+) ion not to Kr(2) (+) but to heteronuclear NeKr(+) ion.

  8. Anisotropy of optical absorption spectra of rare-earth orthoaluminate DyAlO3

    NASA Astrophysics Data System (ADS)

    Valiev, U. V.; Gruber, J. B.; Rakhimov, Sh. A.; Nabelkin, O. A.

    2003-06-01

    The polarization spectra of optical absorption for the 4f-4f transition 6H15/2 6F3/2 and 6H15/2 6F5/2 in the rare-earth orthoaluminate DyAlO3 have been studied experimentally at the temperature T = 78 K. It has been shown that the non-trivial character of the polarization absorption spectra anisotropy for low temperatures can be explained by a contribution of the J-J mixing mechanism for the excited multiplets of the ground 4f(n) configuration of the Dy3+ ion in the low-symmetry crystalline field in the orthoaluminate structure. The results of numerical calculations of energies and wave functions of the Stark sublevels of the excited multiplets 6F3/2 and 6F5/2 are presented for the ground 4f9 configuration of the rare-earth Dy3+ ion in the crystalline field of Cs symmetry.

  9. A wavelet analysis for the X-ray absorption spectra of molecules

    SciTech Connect

    Penfold, T. J.; Tavernelli, I.; Rothlisberger, U.; Milne, C. J.; Abela, R.; Reinhard, M.; Nahhas, A. El; Chergui, M.

    2013-01-07

    We present a Wavelet transform analysis for the X-ray absorption spectra of molecules. In contrast to the traditionally used Fourier transform approach, this analysis yields a 2D correlation plot in both R- and k-space. As a consequence, it is possible to distinguish between different scattering pathways at the same distance from the absorbing atom and between the contributions of single and multiple scattering events, making an unambiguous assignment of the fine structure oscillations for complex systems possible. We apply this to two previously studied transition metal complexes, namely iron hexacyanide in both its ferric and ferrous form, and a rhenium diimine complex, [ReX(CO){sub 3}(bpy)], where X = Br, Cl, or ethyl pyridine (Etpy). Our results demonstrate the potential advantages of using this approach and they highlight the importance of multiple scattering, and specifically the focusing phenomenon to the extended X-ray absorption fine structure (EXAFS) spectra of these complexes. We also shed light on the low sensitivity of the EXAFS spectrum to the Re-X scattering pathway.

  10. The nonlinear spectra of transneptunian objects: Evidence for organic absorption bands

    NASA Astrophysics Data System (ADS)

    Fraser, W.; Brown, M.; Emery, J.

    2014-07-01

    The reflectance spectra of small (D≲250 km) transneptunian objects (TNOs) are generally quite simple. Water-ice absorption is the only feature firmly detected on the majority of TNOs (Brown et al. 2012). Tentative detections of other materials have been presented (e.g., Barucci et al. 2011), but generally speaking, the spectra of small TNOs are nearly linear in the optical (0.5 < λ < 0.9 μ m; Fornasier et al. 2009) and NIR ranges (1.0 < λ < 1.5 μ m) with water-ice absorption apparent at longer wavelengths (Barkume et al. 2008). Each region is well described by a spectral slope, with the optical slope being typically redder than in the NIR (Hainaut and Delsanti, 2002, 2012). Here we present new spectral photometry of two TNOs which do not fit this simple prescription. We will present photometry of TNOs taken from HST during cycles 17 and 18. Unlike most objects, two TNOs do not exhibit linear optical spectra. Rather, they exhibit upward curvatures shortward of λ ˜ 1 μ m, with colors becoming redder with increasing wavelength. Previously published spectra and photometry exhibit similar optical shapes on a number of TNOs, including Borasisi, Pholus, Chariklo, Asbolus, and 2003 AZ_{84} (Romon-Martin et al. 2002, Alvarez-Candal et al. 2008, Fornasier 2009, Hainaut and Delsanti 2012). An interesting candidate for the upward curvature is complex C- and N-bearing hydrocarbons. These organic materials exhibit a broad absorption centered in the UV which is caused by a valence-conduction energy gap (see Moroz et al. 1998). The specific shape of the feature depends on the molecular structure of the organic material, with longer hydrocarbons generally producing wider absorptions. The assertion that the optical spectra of small TNOs are influenced by this hydrocarbon feature is reasonable as the feature is the general result of irradiation of simple organic H-, C-, and N-bearing materials, not dissimilar to that expected to occur on young TNOs (Brunetto et al. 2006

  11. Development of a Near-Ir Cavity Enhanced Absorption Spectrometer for the Detection of Atmospheric Oxidation Products and Organoamines

    NASA Astrophysics Data System (ADS)

    Eddingsaas, Nathan C.; Jewell, Breanna; Thurnherr, Emily

    2014-06-01

    An estimated 10,000 to 100,000 different compounds have been measured in the atmosphere, each one undergoes many oxidation reactions that may or may not degrade air quality. To date, the fate of even some of the most abundant hydrocarbons in the atmosphere is poorly understood. One difficulty is the detection of atmospheric oxidation products that are very labile and decompose during analysis. To study labile species under atmospheric conditions, a highly sensitive, non-destructive technique is needed. Here we describe a near-IR incoherent broadband cavity enhanced absorption spectroscopy (IBBCEAS) setup that we are developing to meet this end. We have chosen to utilize the near-IR, where vibrational overtone absorptions are observed, due to the clean spectral windows and better spectral separation of absorption features. In one spectral window we can simultaneously and continuously monitor the composition of alcohols, hydroperoxides, and carboxylic acids in an air mass. In addition, we have used our CEAS setup to detect organoamines. The long effective path length of CEAS allows for low detection limits, even of the overtone absorption features, at ppb and ppt levels.

  12. Infrared absorption spectra of a Nd0.5Ho0.5Fe3(BO3)4 crystal

    NASA Astrophysics Data System (ADS)

    Gerasimova, Yu. V.; Sofronova, S. N.; Gudim, I. A.; Oreshonkov, A. S.; Vtyurin, A. N.; Ivanenko, A. A.

    2016-01-01

    Infrared absorption spectra of a Nd0.5Ho0.5Fe3(BO3)4 crystal in the spectral range of 30-1700 cm-1 have been measured at temperatures from 6 to 300 K. The experimental spectra have been analyzed based on the semiempirical calculation of the lattice dynamics and the analysis of correlation diagrams of borate complexes. No changes associated with structural phase transitions have been detected in the temperature range of measurements; the effect of magnetic ordering on the infrared absorption spectra has not been observed.

  13. Ultrafast absorption difference spectra of the Fenna-Matthews-Olson protein at 19 K: experiment and simulations.

    PubMed

    Buck, D R; Savikhin, S; Struve, W S

    1997-01-01

    We describe simulations of absorption difference spectra in strongly coupled photosynthetic antennas. In the presence of large resonance couplings, distinctive features arise from excited-state absorption transitions between one- and two-exciton levels. We first outline the theory for the heterodimer and for the general N-pigment system, and we demonstrate the transition between the strong and weak coupling regimes. The theory is applied to Fenna-Matthews-Olson (FMO) bacteriochlorophyll a protein trimers from the green photosynthetic bacterium Prosthecochloris aestuarii and then compared with experimental low-temperature absorption difference spectra of FMO trimers from the green bacterium Chlorobium tepidum.

  14. Absorption, fluorescence, and Raman spectra of mass-selected rhenium dimers in argon matrices

    NASA Astrophysics Data System (ADS)

    Hu, Zhendong; Dong, Jian-Guo; Lombardi, John R.; Lindsay, D. M.; Harbich, W.

    1994-07-01

    We report absorption, laser fluorescence, and Raman spectra for Re2 in an argon matrix prepared by the mass-selected ion deposition technique. The dirhenium absorption spectrum consists of seven band systems (A-G) extending from the near infrared into the ultraviolet region. For the A system (a simple vibrational progression), we find T0=10 817(1) cm-1, ωe=317.1(5) cm-1 and ωexe=1.0(1) cm-1. A Franck-Condon analysis of the A system intensities predicts that this state has a smaller equilibrium internuclear distance than the ground state (Δre=-0.073 Å), in violation of Badger's rule. The B system starts at 13 250 cm-1 and consists of four overlapping (and possibly perturbed) subsystems, whose average vibrational spacing is 270(11) cm-1. The C, D, E, and F systems (vibrational spacings in parentheses) are centered at 22 300 cm-1 (210 cm-1), 24 500 cm-1 (195 cm-1), 29 150 cm-1 (175 cm-1), and 32 900 cm-1 (160 cm-1), respectively. Weak fluorescence spectra, obtained upon laser excitation into the A system, were characterized by vibrational progressions to the dimer ground (X) state and to a low lying (X') state for which T0=357.6(5) cm-1 and ωe=332.3(2) cm-1. Raman and fluorescence progressions to the ground state were observed when the B system was excited. These data give ωe=337.9(49) cm-1 for the dimer ground state in good agreement with measurements from photodetachment spectra [J. Am. Chem. Soc. 108, 178 (1986)]. We propose likely assignments for the low lying electronic states of Re2 and discuss our results in terms of the bonding in the other group VIIB dimers, Mn2 and Tc2.

  15. Exciton-Like Behavior in Low-Energy Absorption Spectra of Simple Alloys

    NASA Astrophysics Data System (ADS)

    Bakshi, Mira Hemendraray

    The valence excitation (ns('2) (--->) nsnp) spectra of Mg, Zn, and Ca impurities at various concentrations in Li have been measured. Polarization modulation ellipsometry was used to determine the impurity-induced changes in real and imaginary parts of the dielectric function simultaneously, together with the differential reflectivity, in the energy range 1.5 - 4.5 eV. The most important result at sufficiently dilute alloy compositions, is that the system investigated display a distinct absorption peak above the Drude background. The height of this peak varies linearly with impurity content. The impurity-specific character of these spectral features points to exciton-like behavior at low-energy, arising from atomic-like excitations in which the electron and the hole linger together at the impurity site. Existing theories of alloy spectra do not explain these effects, because they do not include the Coulomb correlations between the interacting quasiparticles created in the optical event, or the way in which the interacting pair is confined to the impurity site by the mutual field. A remarkable added result of this research is that the exciton-like behavior can be followed with increasing impurity content, all the way to the pure Mg response, when it becomes the interband transition. This has led Kunz and Flynn to reformulate the theory of optical absorption including excited state interactions; and to apply the theory to the spectrum of pure Mg. The Coulomb interaction causes striking effects which are in generally good agreement with experiment. Zn-Li alloys behave differently. At an alloy composition for which Zn-Zn interactions become prevalent, the local, impurity-specific character of the spectrum disappears, leaving only a featureless Drude-like absorption. These results have provoked cluster calculations by Boisvert and Kunz, which predict the spectral shifts, and exhibit qualitatively similar persistence for Mg-Li, and broadening for Zn-Li.

  16. Spectra and structure of small ring compounds. LXVII vibrational spectra, variable temperature FT-IR spectra of krypton solutions, conformational stability and ab initio calculations of 1-bromosilacyclobutane.

    PubMed

    Gounev, T K; Guirgis, G A; Zhen, P; Durig, J R

    2000-11-15

    The infrared (3,200-30 cm(-1) spectra of gaseous and solid 1-bromosilacyclobutane, c-C3H6SiBrH, have been recorded. Additionally, the Raman spectra of the liquid (3,200- 30 cm(-1) with quantitative depolarization values and the solid have been recorded. Both the equatorial and the axial conformers have been identified in the fluid phases, Variable temperature ( - 105 to - 150 degrees C) studies of the infrared spectra of the sample dissolved in liquid krypton have been carried out. From these data the enthalpy difference has been determined to be 182 +/- 18 cm(-1) (2.18 +/- 0.22 kJ/mol) with the equatorial conformer the more stable rotamer and only conformer remaining in the annealing solid. At ambient temperature there is approximately 22% of the axial conformer present in the vapor phase. A complete vibrational assignment is proposed for both conformers based on infrared contours, relative intensities, depolarization values and group frequencies. The vibrational assignments are supported by normal coordinate calculations utilizing the force constants from ab initio MP2/6-31G(d) calculations. From the frequencies of the Si-H stretch, the Si-H bond distance of 1.483 A has been determined for both the equatorial and the axial conformers. Complete equilibrium geometries have been determined for both rotamers by ab initio calculations employing the 6-31G(d) and 6-311 +/- G(d,p) basis sets at levels of Hartree Fock (RHF) and/or Moller- Plesset with full electron correlation by the perturbation method to the second order (MP2). The results are discussed and compared to those obtained for some similar molecules.

  17. Stratospheric N2O mixing ratio profile from high-resolution balloon-borne solar absorption spectra and laboratory spectra near 1880/cm

    NASA Technical Reports Server (NTRS)

    Rinsland, C. P.; Goldman, A.; Murcray, F. J.; Murcray, D. G.; Smith, M. A. H.; Seals, R. K., Jr.; Larsen, J. C.; Rinsland, P. L.

    1982-01-01

    A nonlinear least-squares fitting procedure is used to derive the stratospheric N2O mixing ratio profile from balloon-borne solar absorption spectra and laboratory spectra near 1880/cm. The atmospheric spectra analyzed here were recorded during sunset from a float altitude of 33 km with the University of Denver's 0.02/cm resolution interferometer near Alamogordo, N.M. (33 deg N) on Oct. 10, 1979. The laboratory data are used to determine the N2O line intensities. The measurements suggest an N2O mixing ratio of 264 ppbv near 15 km, decreasing to 155 ppbv near 28 km.

  18. Stratospheric N(2)O mixing ratio profile from high-resolution balloon-borne solar absorption spectra and laboratory spectra near 1880 cm(-1).

    PubMed

    Rinsland, C P; Goldman, A; Murcray, F J; Murcray, D G; Smith, M A; Seals, R K; Larsen, J C; Rinsland, P L

    1982-12-01

    A nonlinear least-squares fitting procedure has been used to derive the stratospheric N(2)O mixing ratio profile from balloon-borne solar absorption spectra and laboratory spectra near 1880 cm(-1). The atmospheric spectra were recorded during sunset from a float altitude of 33 km with the University of Denver 0.02-cm(-1) resolution interferometer near Alamogordo, N.M. (33 degrees N), on 10 Oct. 1979. The laboratory data were used to determine the N(2)O line intensities. The measurements indicate an N(2)O mixing ratio of 264 ppbv near 15 km decreasing to 155 ppbv near 28 km. PMID:20401069

  19. Stratospheric N2O mixing ratio profile from high-resolution balloon-borne solar absorption spectra and laboratory spectra near 1880/cm

    NASA Astrophysics Data System (ADS)

    Rinsland, C. P.; Goldman, A.; Murcray, F. J.; Murcray, D. G.; Smith, M. A. H.; Seals, R. K., Jr.; Larsen, J. C.; Rinsland, P. L.

    1982-12-01

    A nonlinear least-squares fitting procedure is used to derive the stratospheric N2O mixing ratio profile from balloon-borne solar absorption spectra and laboratory spectra near 1880/cm. The atmospheric spectra analyzed here were recorded during sunset from a float altitude of 33 km with the University of Denver's 0.02/cm resolution interferometer near Alamogordo, N.M. (33 deg N) on Oct. 10, 1979. The laboratory data are used to determine the N2O line intensities. The measurements suggest an N2O mixing ratio of 264 ppbv near 15 km, decreasing to 155 ppbv near 28 km.

  20. CHIH-DFT determination of the molecular structure and IR and UV spectra of solanidine.

    PubMed

    Glossman-Mitnik, Daniel

    2007-01-01

    Solanidine is the steroidal aglycon of some potato glycoalkaloids and a very important precursor for the synthesis of hormones and some pharmacologically active compounds. In this work, we make use of a new chemistry model within Density Functional Theory, called CHIH-DFT, to calculate the molecular structure of solanidine, as well to predict its infrared and ultraviolet spectra. The calculated values are compared with the experimental data available for this molecule as a means of validation of our proposed chemistry model.

  1. Finding mineralogically interesting targets for exploration from spatially coarse visible and near IR spectra

    NASA Astrophysics Data System (ADS)

    Roach, Leah H.; Mustard, John; Gendrin, Aline; Fernández-Remolar, David; Amils, Ricardo; Amaral-Zettler, Linda

    2006-11-01

    Spectroscopic studies of analog terrestrial mineral assemblages are necessary to develop criteria to identify similar environments on Mars. We use visible/near infrared (VNIR) laboratory, field, and remotely acquired spectral data to identify the iron-bearing and hydrous minerals of Rio Tinto, Spain, an astrobiological analog. Mineralogy evolves from iron sulfate- and oxide-rich (jarosite, rozenite, gypsum, schwertmannite, copiapite, goethite, and hematite assemblages) in young sediments to hydrated iron oxides in preserved terraces. Using spectra from the Rio Tinto, we examine one of the key challenges of extraterrestrial exploration: how to identify promising targets from spatially coarse data for in situ investigation. We apply an index to quantify the expression of spectral diversity as a function of spatial scale from hand sample to landscape. To validate this method for use at the decimeter orbital scale, we apply the index to cm-scale point spectra and meter-scale gridded spectra collected in the field. This exercise in spatial scaling gives increased confidence in the ability of the Spectral Variance Index (SVI) method to locate regions with increased mineral diversity from remotely sensed data. We divide the remotely sensed data into 25 × 25 pixel (200 m × 200 m) cells and calculate the average mean (albedo) and spectral variance over all wavelengths for each cell. We next calculate the expected variance for each cell with a linear regression between mean and spectral variance. The number of standard deviations of each cell's spectral variance is from the expected variance is the SVI value. We locate ˜ 20 areas with high SVI values within the tailing piles and along wide riverbanks downstream of the active mine. This method uses spatially coarse VNIR spectra to recognize areas in Rio Tinto that would be ideal targets for future field exploration, and could also be applied to Mars orbital spectral datasets, such as OMEGA and CRISM.

  2. Phase speed spectra of transient eddy fluxes and critical layer absorption

    NASA Technical Reports Server (NTRS)

    Randel, William J.; Held, Isaac M.

    1991-01-01

    Tropospheric zonal mean eddy fluxes of heat and momentum, and the divergence of the Eliassen-Palm flux, are decomposed into contributions from different zonal phase speeds. Data analyzed are the European Center for Medium Range Weather Forecasts operational global analyses covering 1980-1987. Eastward moving medium-scale waves (zonal waves 4-7) dominate the spectra of lower tropospheric heat fluxes in both hemispheres and all seasons. Upper tropospheric wave flux spectra are similar to the low level spectra in midlatitudes, but shift to slower zonal phase speeds as low latitudes are approached. The cause of this shift is the selective absorption of faster moving components in midlatitudes as the waves propagate meridionally. Latitude-phase speed distributions of eddy fluxes are constructed and compared to the zonal mean wind structure. These results demonstrate that upper tropospheric eddies break and decelerate the zonal mean flow approximately 10-20 deg in latitude away from their critical line (where phase speed equals zonal wind speed). Comparisons are also made with results from the middle stratosphere.

  3. Shape of the absorption and fluorescence spectra of condensed phases and transition energies.

    PubMed

    Lagos, Miguel; Paredes, Rodrigo

    2014-11-13

    General integral expressions for the temperature-dependent profile of the spectral lines of photon absorption and emission by atomic or molecular species in a condensed environment are derived with no other hypothesis than: (a) The acoustic vibrational modes of the condensed host medium constitute the thermodynamic energy reservoir at a given constant temperature, and local electronic transitions modifying the equilibrium configuration of the surroundings are multiphonon events, regardless of the magnitude of the transition energy. (b) Electron-phonon coupling is linear in the variations of the bond length. The purpose is to develop a theoretical tool for the analysis of the spectra, allowing us to grasp highly accurate information from fitting the theoretical line shape function to experiment, including those spectra displaying wide features. The method is illustrated by applying it to two dyes, Lucifer Yellow CH and Coumarin 1, which display fluorescence maxima of 0.41 and 0.51 eV fwhm. Fitting the theoretical curves to the spectra indicates that the neat excitation energies are 2.58 eV ± 2.5% and 3.00 eV ± 2.0%, respectively.

  4. Plastocyanin conformation: an analysis of its near ultraviolet absorption and circular dichroic spectra

    SciTech Connect

    Draheim, J.E.; Anderson, G.P.; Duane, J.W.; Gross, E.L.

    1986-04-01

    The near-ultraviolet absorption and circular dichroic spectra of plastocyanin are dependent upon the redox state, solution pH, and ammonium sulfate concentration. This dependency was observed in plastocyanin isolated from spinach, poplar, and lettuce. Removal of the copper atom also perturbed the near-ultraviolet spectra. Upon reduction there are increases in both extinction and ellipticity at 252 nm. Further increases at 252 nm were observed upon formation of apo plastocyanin eliminating charge transfer transitions as the cause. The spectral changes in the near-ultraviolet imply a flexible tertiary conformation for plastocyanin. There are at least two charge transfer transitions at approx.295-340 nm. One of these transitions is sensitive to low pH's and is attributed to the His 87 copper ligand. The redox state dependent changes observed in the near-ultraviolet spectra of plastocyanin are attenuated either by decreasing the pH to 5 or by increasing the ammonium sulfate concentration to 2.7 M. This attenuation cannot be easily explained by simple charge screening. Hydrophobic interactions probably play an important role in this phenomenon. The pH and redox state dependent conformational changes may play an important role in regulating electron transport.

  5. Orthogonal spectra and cross sections: Application to optimization of multi-spectral absorption and fluorescence lidar

    SciTech Connect

    Shokair, I.R.

    1997-09-01

    This report addresses the problem of selection of lidar parameters, namely wavelengths for absorption lidar and excitation fluorescence pairs for fluorescence lidar, for optimal detection of species. Orthogonal spectra and cross sections are used as mathematical representations which provide a quantitative measure of species distinguishability in mixtures. Using these quantities, a simple expression for the absolute error in calculated species concentration is derived and optimization is accomplished by variation of lidar parameters to minimize this error. It is shown that the optimum number of wavelengths for detection of a species using absorption lidar (excitation fluorescence pairs for fluorescence lidar) is the same as the number of species in the mixture. Each species present in the mixture has its own set of optimum wavelengths. There is usually some overlap in these sets. The optimization method is applied to two examples, one using absorption and the other using fluorescence lidar, for analyzing mixtures of four organic compounds. The effect of atmospheric attenuation is included in the optimization process. Although the number of optimum wavelengths might be small, it is essential to do large numbers of measurements at these wavelengths in order to maximize canceling of statistical errors.

  6. Theoretical study on absorption and emission spectra of pyrrolo-C analogues

    NASA Astrophysics Data System (ADS)

    Liu, Hongxia; Liu, Jianhua; Yang, Yan; Li, Yan; Wang, Haijun

    2015-01-01

    Fluorescent nucleoside analogues have attracted much attention in studying the structure and dynamics of nucleic acids in recent years. In the present work, we use theoretical calculations to investigate the structural and optical properties of Pyrrolo-C (PyC) and its analogues which are modified via the conjugation or fusion of different aromatic ring to the PyC core. We also consider the effects of aqueous solution and base pairing. The results show that the fluorescent pyrrolo-C analogues can pair with guanosine to form stable H-bonded WC base pairs. The calculated absorption peaks of modified deoxyribonucleosides agree well with the measured data. The absorption and emission maxima of the pyrrolo-C analogues are greatly red shifted compared with nature C. The solvent effects can induce wavelength blue shift and increase the oscillator strengths in both the absorption and emission spectra. With regard to the WC base pairs, the B3LYP functional reveals that the lowest energy transitions of modified GC base pairs are charge transfer excitation while the CAM-B3LYP functional predicts that all the lowest transitions are localised on the pyrrolo-C analogues. The M062X and CAM-B3LYP functionals show good agreement with respect to both the value of the lowest energy transitions as well as the oscillator strengths.

  7. Quantitative comparisons of absorption cross-section spectra and integrated intensities of HFC-143a

    NASA Astrophysics Data System (ADS)

    Le Bris, Karine; Graham, Laura

    2015-01-01

    The integrated absorption cross-sections of HFC-143a (CH3CF3) differ substantially in the literature. This leads to an important uncertainty on the value of the radiative efficiency of this molecule. The ambiguity on the absorption cross-sections of HFC-143a is highlighted by the existence of two significantly different datasets in the HITRAN database. To solve the issue, we performed high-resolution Fourier transform infrared laboratory measurements of HFC-13a and compared the spectra with the two HITRAN datasets and with the data from the Pacific Northwest National Laboratory (PNNL). The experimental methods and data analysis techniques are examined and typical sources of errors are discussed. The integrated intensities of the main bands are compared to other literature values. It was found that the integrated absorption cross-section values in the highest range - around 13.8 ×10-17 cm .molecule-1 in the 570-1500 cm-1 spectral band - show the most consistency between authors.

  8. Absorption-Mode Fourier Transform Mass Spectrometry: The Effects of Apodization and Phasing on Modified Protein Spectra

    NASA Astrophysics Data System (ADS)

    Qi, Yulin; Li, Huilin; Wills, Rebecca H.; Perez-Hurtado, Pilar; Yu, Xiang; Kilgour, David P. A.; Barrow, Mark P.; Lin, Cheng; O'Connor, Peter B.

    2013-06-01

    The method of phasing broadband Fourier transform ion cyclotron resonance (FT-ICR) spectra allows plotting the spectra in the absorption-mode; this new approach significantly improves the quality of the data at no extra cost. Herein, an internal calibration method for calculating the phase function has been developed and successfully applied to the top-down spectra of modified proteins, where the peak intensities vary by 100×. The result shows that the use of absorption-mode spectra allows more peaks to be discerned within the recorded data, and this can reveal much greater information about the protein and modifications under investigation. In addition, noise and harmonic peaks can be assigned immediately in the absorption-mode.

  9. Laboratory studies at high resolution of the infrared absorption spectra of a number of gases found in planetary atmospheres

    NASA Technical Reports Server (NTRS)

    Hunt, R. H.

    1983-01-01

    The infrared absorption spectra of a number of gases found in planetary atmospheres were studied at high resolution. Absorption line measurements which can be of value for the interpretation of planetary spectra in terms of molecular abundances and conditions in the planetary atmospheres were provided. The high resolution spectra have yielded measurements of individual vibration rotation line parameters including positions, strengths, pressure broadened widths and, where assignments were unknown, the temperature sensitivity of the strengths. Such information allows the determinations of the absorption of a given molecular gas under planetary conditions of temperature and pressure and at the same time it provides the data necessary if the spectra are to be understood in terms of basic molecular theory. Thus this work has included spectral analysis in the form of line assignments as well as fitting of the data to Hamiltonian models. Such fitting is very useful in that it helps to confirm and extend the assignments.

  10. Absorption-mode Fourier transform mass spectrometry: the effects of apodization and phasing on modified protein spectra.

    PubMed

    Qi, Yulin; Li, Huilin; Wills, Rebecca H; Perez-Hurtado, Pilar; Yu, Xiang; Kilgour, David P A; Barrow, Mark P; Lin, Cheng; O'Connor, Peter B

    2013-06-01

    The method of phasing broadband Fourier transform ion cyclotron resonance (FT-ICR) spectra allows plotting the spectra in the absorption-mode; this new approach significantly improves the quality of the data at no extra cost. Herein, an internal calibration method for calculating the phase function has been developed and successfully applied to the top-down spectra of modified proteins, where the peak intensities vary by 100×. The result shows that the use of absorption-mode spectra allows more peaks to be discerned within the recorded data, and this can reveal much greater information about the protein and modifications under investigation. In addition, noise and harmonic peaks can be assigned immediately in the absorption-mode.

  11. Davydov coupling as a factor influencing the H-bond IR signature: Computational study of the IR spectra of 3-thiopheneacrylic acid crystal

    NASA Astrophysics Data System (ADS)

    Rekik, Najeh; Al-Agel, Faisal A.; Flakus, Henryk T.

    2016-03-01

    In this work, we have studied the role played by Davydov coupling in the evolution of the fine structure of the IR spectra of 3-thiopheneacrylic acid dimer crystal. For this purpose, we took into account the linear dependence of the Davydov coupling on the position coordinate Qi(i = 1, 2) of the slow frequency O←sbnd H …O→ mode of the two H-bond bridges of the cyclic dimer. The Davydov coupling VD term was expanded up to first order with respect to the slow mode coordinate Qi. We have considered: VD (Q1 ,Q2) =VD0 + Θ (Q1 +Q2). That leads to the anharmonic expression of the Davydov coupling parameter VD: VD(Qg) =VD0 +√{ 2} ΘQg within the symmetrized coordinates. The effect of the second order parameter (Θ) of Davydov coupling on to the spectral density was undertaken. The numerical calculations clearly show that the crystal spectral properties of the infrared υOsbnd H stretching band remain in a close relation with the new anharmonic coupling parameter and provide a direct evidence of the increase of the level density and the spectral broadening.

  12. Laboratory absorption spectra of molecules at interstellar cloud temperatures - First measurements on CO at about 97 nm

    NASA Technical Reports Server (NTRS)

    Smith, P. L.; Yoshino, K.; Stark, G.; Ito, K.; Stevens, M. H.

    1991-01-01

    In the 91-100 nm spectral region, where absorption of photons by interstellar CO usually leads to dissociation, laboratory spectra obtained at 295 K show that most CO bands are both overlapped and perturbed. Reliable band oscillator strengths cannot be extracted from such spectra. As a consequence, synthetic extreme-ultraviolet absorption spectra for CO at the low temperatures that prevail in interstellar clouds are uncertain. A supersonic expansion technique has been used to cool CO to 30 K and three bands in the 97-nm region have been studied with high spectral resolution. The measured spectrum at 30 K is in reasonable agreement with some published modeled spectra, but the ratios of integrated cross sections are somewhat different from those determined from low resolution spectra obtained at 295 K, in which the bands are blended.

  13. Pressure-driven variations of hydrogen bonding energy in ammonium azide (NH4N3): IR absorption and Raman scattering studies.

    PubMed

    Wu, Xiaoxin; Ma, Fengxian; Ma, Chunli; Cui, Hang; Liu, Zhenxian; Zhu, Hongyang; Wang, Xiaoli; Cui, Qiliang

    2014-07-14

    In this study, high pressure infrared (IR) absorption and Raman scattering studies for ammonium azide (NH4N3) were carried out at room temperature up to 20 GPa and 22 GPa, respectively. For comparison and further assignment, the vibrational spectra at ambient conditions were calculated using CASTEP code, particularly for the far- and mid-IR modes. The recorded vibrational data consistently indicated a pressure-induced phase transition at 2.9 GPa. All observed vibrational modes maintained their identities at the high pressure phase, indicating that NH4N3 was still presented in the form of ammonium cations and azide anions linked by the hydrogen bond (N-H⋯N). Above 2.9 GPa, the relative magnitude of the torsional mode weakened and the N-H symmetric stretch displayed a redshift, indicating strengthened hydrogen bonding energy. The opposite effects were observed above 12 GPa, where the relative magnitude of the torsional mode strengthened and the N-H symmetric stretch reverted to a blueshift, indicating weakened hydrogen bonding energy. It can be concluded that the hydrogen bonding energy exhibited a weakening (0-2.9 GPa), strengthening (2.9-12 GPa), and then again weakening (12-22 GPa) phenomena with the increasing of compression. The hydrogen bonding energy changing with the increase of pressure can be ascribed to a phase transition at 2.9 GPa and a rotational or bending behavior of azide ions at 12 GPa.

  14. Atmospheric pressure and temperature profiling using near IR differential absorption lidar

    NASA Technical Reports Server (NTRS)

    Korb, C. L.; Schwemmer, G. K.; Dombrowski, M.; Weng, C. Y.

    1983-01-01

    The present investigation is concerned with differential absorption lidar techniques for remotely measuring the atmospheric temperature and pressure profile, surface pressure, and cloud top pressure-height. The procedure used in determining the pressure is based on the conduction of high-resolution measurements of absorption in the wings of lines in the oxygen A band. Absorption with respect to these areas is highly pressure sensitive in connection with the mechanism of collisional line broadening. The method of temperature measurement utilizes a determination of the absorption at the center of a selected line in the oxygen A band which originates from a quantum state with high ground state energy.

  15. Reflectance Spectra of Regolith Analogs in the middle-IR: Influence of Grain Size

    NASA Astrophysics Data System (ADS)

    Le Bras, A.

    1999-09-01

    Reflectance spectroscopy of asteroids permits to infer the mineral composition of their surface. Since spectral mineral features are sensitive to surface parameters such as grain size, regolith compactness, temperature, maturity,... the interpretation of remote-sensing asteroids spectra is not easy nor unique. Asteroids family members show a continuous dispersion of their spectral characteristics (Doressoudiram et al., 1997) which seems to be due first to a compositional variation but also to some space weathering processes. Space weathering may contribute to the spectral dispersion of the smallest S-type asteroids too. New laboratory spectra are required in order to understand the influence of surface parameters and space weathering effects, and to interpret the recent high-spectral resolution observations from ISO. We started an experimental program at Institut d'Astrophysique Spatiale (Orsay, France), using the 2.5-120 microns interferometer spectrometer, to study the influence of surface parameters on mineral features. First, we study grain size effects with two types of terrestrial rocks: anorthosite (bright) and basalt (dark) in the 2-40 microns range. In a second part, we will extend our experiments to other samples (meteorites and asteroid-like mixtures), and to the visible and NIR range. We present the experimental setup and the preliminary results obtained for 6 different grain size ranges with basalt and anorthosite.

  16. Disease pattern recognition in FT-IR spectra of human sera

    NASA Astrophysics Data System (ADS)

    Petrich, Wolfgang H.; Dolenko, Brion; Fink, Daniel J.; Frueh, Johanna; Greger, Helmut; Jacob, Stephan; Keller, Franz; Nikulin, Alexander; Otto, Matthias; Pessin-Minsley, Melissa S.; Quarder, Ortrud; Somorjai, Raymond L.; Staib, Arnulf; Thienel, Ulrich; Werner, Gerhard H.; Wielinger, Hans

    2001-06-01

    We observed differences between the mid-infrared spectra of sera originating from healthy volunteers and from patients with diabetes mellitus or rheumatoid arthritis. These differences were found to be significant in terms of the Fisher criterion, the t-test, and the Kolmogorov-Smirnov test. The significance allows for a classification of the spectra and a probability (`DPR-score') of belonging to the class `healthy' can be computed. In comparing the samples from 80 diabetes patients with samples from 40 healthy volunteers we are able to achieve a sensitivity and a specificity of 80% and above. The DPR-score correlates better with the actual status of health than the glucose concentration alone. In a study on rheumatoid arthritis we compared the spectral signatures of sera taken from 188 rheumatoid arthritis patients and sera from 196 healthy volunteers. By applying linear discriminant analysis to 2/3 of the samples we are able to classify the remaining third of the samples (independent validation) with a sensitivity of 84% and a specificity of 88%.

  17. Constraints on Reionization and Source Properties from the Absorption Spectra of z > 6.2 Quasars

    NASA Astrophysics Data System (ADS)

    Mesinger, Andrei; Haiman, Zoltán

    2007-05-01

    We make use of hydrodynamical simulations of the intergalactic medium (IGM) to create model quasar absorption spectra. We compare these model spectra with the observed Keck spectra of three z>6.2 quasars with full Gunn-Peterson troughs: SDSS J1148+5251 (z=6.42), SDSS J1030+0524 (z=6.28), and SDSS J1623+3112 (z=6.22). We fit the probability density distributions (PDFs) of the observed Lyα optical depths (τα) with those generated from the simulation by exploring a range of values for the size of the quasar's surrounding H II region, RS; the volume-weighted mean neutral hydrogen fraction in the ambient IGM, x¯HI; and the quasar's ionizing photon emissivity, N˙Q. In order to avoid averaging over possibly large sight line-to-sight line fluctuations in IGM properties, we analyze each observed quasar independently. We find the following results for J1148+5251, J1030+0524, and J1623+3112: the best-fit sizes RS are 40, 41, and 29 (comoving) Mpc, respectively. For the later two quasars, the value is significantly larger than the radius corresponding to the wavelength at which the quasar's flux vanishes. These constraints are tight, with only ~10% uncertainties, comparable to those caused by redshift determination errors. The best-fit values of N˙Q are 2.1, 1.3, and 0.9×1057 s-1, respectively, with a factor of ~2 uncertainty in each case. Finally, the best-fit values of x¯HI are 0.16, 1.0, and 1.0, respectively. The uncertainty in the case of J1148+5251 is large, and x¯HI is not well constrained. However, for both J1030+0524 and J1623+3112, we find a significant lower limit of x¯HI>~0.033. Our method is different from previous analyses of the GP absorption spectra of these quasars, and our results strengthen the evidence that the rapid end stage of reionization is occurring near z~6.

  18. FT-IR and FT-Raman spectra, MEP and HOMO-LUMO of 2,5-dichlorobenzonitrile: DFT study.

    PubMed

    Alcolea Palafox, M; Bhat, Daisy; Goyal, Yasha; Ahmad, Shabbir; Hubert Joe, I; Rastogi, V K

    2015-02-01

    The experimental FT-IR and FT-Raman spectra of 2,5-dichlorobenzonitrile molecule were recorded at room temperature, and the results compared with quantum chemical theoretical values using MP2 and DFT methods. Molecular geometry, vibrational wavenumbers and thermodynamic parameters were calculated. With the help of specific scaling procedures for the computed wavenumbers, the experimentally observed FTIR and FT-Raman bands were analyzed and assigned to different normal modes of the molecule. Most of the modes have wavenumbers in the expected range and the error obtained was in general very low. Several general conclusions were deduced. The NBO analysis has been done and Molecular Electrostatic Potential (MEP) has been plotted.

  19. FT-IR Spectra Of The C=O And C-H Stretching Vibration Of Lauric Acid

    NASA Astrophysics Data System (ADS)

    Shifu, Weng; Jinguang, Wu; Guangxian, Xu

    1989-12-01

    FT-IR spectra of lauric acid in different media were examined. In very dilute solution of lauric acid in CC14, the two bands at 1711 and 1760 cm-1 the region 1650 to 1800 cm-1 were observed for the C=0 stretching modes of dimer and monomer of lauric acid, respectively. In n-butanol KBr pellet and fluorinated hydrocarbon media, the three bands at 1712, 1701 and 1687 cm-1 after deconvolution and curve analysis for the C=0 stretching mode can be observed. In the region of C-H stretching vibration, the wavenumber shifts of the CH2 symmetric and antisymmetric stretching bands of lauric acid in different media show that the packings of acyl chains of lauric acid in different media are not the same.

  20. Simulation of X-ray absorption spectra with orthogonality constrained density functional theory†

    PubMed Central

    Derricotte, Wallace D.; Evangelista, Francesco A.

    2015-01-01

    Orthogonality constrained density functional theory (OCDFT) is a variational time-independent approach for the computation of electronic excited states. In this work we extend OCDFT to compute core-excited states and generalize the original formalism to determine multiple excited states. Benchmark computations on a set of 13 small molecules and 40 excited states show that unshifted OCDFT/B3LYP excitation energies have a mean absolute error of 1.0 eV. Contrary to time-dependent DFT, OCDFT excitation energies for first- and second-row elements are computed with near-uniform accuracy. OCDFT core excitation energies are insensitive to the choice of the functional and the amount of Hartree–Fock exchange. We show that OCDFT is a powerful tool for the assignment of X-ray absorption spectra of large molecules by simulating the gas-phase near-edge spectrum of adenine and thymine. PMID:25690350

  1. Electronic absorption spectra of linear and cyclic Cn+ n=7-9 in a neon matrix

    NASA Astrophysics Data System (ADS)

    Fulara, Jan; Shnitko, Ivan; Batalov, Anton; Maier, John P.

    2005-07-01

    The Cn+n=7-9 cations were produced by electron-impact ionization of perchloronaphthalene, mass selected, and their electronic absorption spectra in 6K neon matrices recorded. The linear and cyclic isomers of C7+ and C8+ are detected. Three systems of linear C7+ are observed with origin bands near 770, 332, and 309nm. The cyclic C7+ shows two transitions near 676 and 448nm. One system of linear C9+ is observed commencing at 371nm. Linear C8+ shows five dipole-allowed electronic transitions from the X˜Πg2 ground state, and the strongest ones have the origin bands at 890.8 and 308.1nm. Five electronic transitions of cyclic C8+ are also discernible.

  2. Error reduction in retrievals of atmospheric species from symmetrically measured lidar sounding absorption spectra.

    PubMed

    Chen, Jeffrey R; Numata, Kenji; Wu, Stewart T

    2014-10-20

    We report new methods for retrieving atmospheric constituents from symmetrically-measured lidar-sounding absorption spectra. The forward model accounts for laser line-center frequency noise and broadened line-shape, and is essentially linearized by linking estimated optical-depths to the mixing ratios. Errors from the spectral distortion and laser frequency drift are substantially reduced by averaging optical-depths at each pair of symmetric wavelength channels. Retrieval errors from measurement noise and model bias are analyzed parametrically and numerically for multiple atmospheric layers, to provide deeper insight. Errors from surface height and reflectance variations are reduced to tolerable levels by "averaging before log" with pulse-by-pulse ranging knowledge incorporated.

  3. kspectrum: an open-source code for high-resolution molecular absorption spectra production

    NASA Astrophysics Data System (ADS)

    Eymet, V.; Coustet, C.; Piaud, B.

    2016-01-01

    We present the kspectrum, scientific code that produces high-resolution synthetic absorption spectra from public molecular transition parameters databases. This code was originally required by the atmospheric and astrophysics communities, and its evolution is now driven by new scientific projects among the user community. Since it was designed without any optimization that would be specific to any particular application field, its use could also be extended to other domains. kspectrum produces spectral data that can subsequently be used either for high-resolution radiative transfer simulations, or for producing statistic spectral model parameters using additional tools. This is a open project that aims at providing an up-to-date tool that takes advantage of modern computational hardware and recent parallelization libraries. It is currently provided by Méso-Star (http://www.meso-star.com) under the CeCILL license, and benefits from regular updates and improvements.

  4. Optical absorption and energy-loss spectra of aligned carbon nanotubes

    NASA Astrophysics Data System (ADS)

    García-Vidal, F. J.; Pitarke, J. M.

    2001-07-01

    Optical-absorption cross-sections and energy-loss spectra of aligned multishell carbon nanotubes are investigated, on the basis of photonic band-structure calculations. A local graphite-like dielectric tensor is assigned to every point of the tubules, and the effective transverse dielectric function of the composite is computed by solving Maxwell's equations in media with tensor-like dielectric functions. A Maxwell-Garnett-like approach appropriate to the case of infinitely long anisotropic tubules is also developed. Our full calculations indicate that the experimentally measured macroscopic dielectric function of carbon nanotube materials is the result of a strong electromagnetic coupling between the tubes. An analysis of the electric-field pattern associated with this coupling is presented, showing that in the close-packed regime the incident radiation excites a very localized tangential surface plasmon.

  5. FT-IR Spectra of Antifreeze Glycoproteins in Heavy Water and D2O Ice.

    NASA Astrophysics Data System (ADS)

    Tsvetkova, N. M.; Crowe, J. H.; Feeney, R. H.; Fink, W. H.; Yeh, Yin

    2000-03-01

    This work presents FT-IR studies on the antifreeze glycoprotein (AFGP)/heavy water (D2O) mixtures during freezing and melting. AFGP in the blood serum of polar fish are known to prevent ice crystal growth by a non-colligative mechanism. There are 8 known fractions of AFGP (1 8) that range in molecular mass from 33.7 to 2.6 kD respectively, each composed of alanine-alanine-threonine repeats, with a disaccharide attached to the threonine residue. The smallest peptide (AFGP-8) is structurally different from fractions 1-5 in that it contains proline substituting for alanine in certain positions. Substantial linewidth change of the D20 bending mode (ca. 1210 cm-1) was measured with solutions containing fractions 2-5 during both freezing and thawing cycles, suggesting significant coupling between protein and water molecules. At the same time, the Amide I band between 1620 and 1675 cm-1 shows that 310 helix and random coils are the main conformations of fractions 2-5 and fraction 8 in the presence of ice. In liquid state, b-sheet dominates the secondary structure of AFGP 8, whereas b-sheet and random coil are the main conformations of AFGP 2-5. These results are discussed in terms of the ability of AFGP 2-5 to affect the surface states of ice.

  6. Empirical Computation of IR and Vcd Spectra of RNA and Spectroscopic Analysis of the Tat-Tar Interaction.

    NASA Astrophysics Data System (ADS)

    Xiang, Ting

    In the first part of this thesis, we present models of VCD and IR intensities computation which are based on the exciton approach. The models include degenerate extended coupled oscillator model (DECO), nondegenerate extended oscillator model (NECO) and pseudo-single strand approach (PSS). We also show the necessity to include vibrations other than the C=O stretching motion and improve our computation by adjusting the direction of dipole derivative with respect to the C=O bond direction. We report observed and computed IR and VCD spectra of a number of polyribonucleic acids in D_2O/buffer solution in the 1600 -1750 cm^{-1}^ectral region. The experimental data are compared with results calculated using different levels of sophistication within the exciton approach. In the second part of this thesis, presented the CD, VCD, stopped-flow and molecular modeling results of a short peptide, which contains the basic region of the HIV-1 Tat (Trans-activator) protein, interacting with DeltaTAR, a shortened form of native TAR (Trans-activation response element) which is located at the 5^' end of the HIV long terminal repeat. The results confirm the conformational changes of both molecules upon binding to each other. Measured and computed VCD spectra suggest a left handed helix structure for the peptide. Kinetic studies indicate a two step mechanism for the binding reaction of these two molecules with k _1=0.7times10^8 { rm M}^{-1}{rm sec }^{-1} and rm k_2=69.4 sec^{-1}..

  7. IR and Raman spectra, ab initio and density functional computations of the vibrational spectra, molecular geometries and atomic charges of uracil and 5-aminouracil.

    PubMed

    Singh, J S

    2014-09-15

    Infrared (IR) and Raman spectra of uracil and 5-aminouracil have been recorded and analyzed between the region 200-4000 cm(-1). The optimized molecular geometries, atomic polar tensor (APT) charges and vibrational characteristics have been studied theoretically using restricted Hartree-Fock (RHF) and density functional theory (DFT) methods. Using the Becke's exchange in conjunction with Lee-Yang-Parr's correlation functional and Becke's three-parameter hybrid method (B3LYP), the ab initio and DFT calculations were carried out to study the optimized molecular fundamental vibrational frequencies for uracil and 5-aminouracil by employing Gaussian-03 program. The fundamental vibrational frequencies along with their corresponding intensities in IR and Raman activities and depolarization ratios of the Raman lines have also been calculated using the RHF and DFT methods employing different basis sets. In quantum chemical calculations, the most of B3LYP/6-311++G** vibrational frequencies are in the excellent agreement with available experimental assignments and helped in the reassignments of some fundamental vibrational modes. On the basis of calculated results, the assignments of some missing frequencies in the experimental study are proposed. Assuming under the Cs point group for both molecules, the distribution of normal mode of vibrations between the two species as planar (a') and non-planar (a″) are given by 25a'+11a″, of which 30 modes (21a'+9a″) correspond to the uracil moiety and 6 modes (4a'+2a″) to the NH2 group. Kekule ring stretching mode is found to be comparatively higher frequency magnitude than the mode of uracil due to the involvement of hydrogen bonding of amino group. But, the ring breathing is found to be lower frequency magnitude compared to those for uracil which could be due to mass effect of the NH2 group in place of the hydrogen atom. All other bands have also been assigned different fundamentals/overtones/combinations.

  8. Synthesis, Characterization, Absorption Spectra, and Luminescence Properties of Organometallic Platinum(II) Terpyridine Complexes.

    PubMed

    Arena, Giuseppe; Calogero, Giuseppe; Campagna, Sebastiano; Monsù Scolaro, Luigi; Ricevuto, Vittorio; Romeo, Raffaello

    1998-06-01

    A series of new organometallic platinum(II) complexes containing terdentate polypyridine ligands has been prepared and characterized. Their absorption spectra in 4:1 (v/v) MeOH/EtOH fluid solution at room temperature and luminescence in the same matrix at 77 K have been investigated. The new species are [Pt(terpy)Ph]Cl (3, terpy = 2,2':6',2"-terpyridine, Ph = phenyl), [Pt(Ph-terpy)Cl]Cl (4, Ph-terpy = 4'-phenyl-2,2':6',2"-terpyridine), [Pt(Ph-terpy)Me]Cl (5), and [Pt(Ph-terpy)Ph]Cl (6). The results have been compared with those for [Pt(terpy)Cl]Cl (1) and [Pt(terpy)Me]Cl (2). NMR data evidence that all the complexes but 3 and 6 oligomerize in solution leading to stacked species. The absorption spectra are dominated by moderately intense metal-to-ligand charge-transfer (MLCT) bands in the visible region and by intense ligand-centered (LC) bands in the UV region. All the compounds are luminescent in a 4:1 (v/v) MeOH/EtOH rigid matrix at 77 K, exhibiting a structured emission within the range 460-600 nm. This feature is assigned to formally (3)LC excited states which receive substantial contribution from closely lying (3)MLCT levels. Complexes 1, 2, 4, and 5 also exhibit a relatively narrow and unstructured luminescence band within the range 680-800 nm, which dominates the luminescence spectrum on increasing concentration and exciting at longer wavelengths. The band is assigned to a dsigma(metal) --> pi(polypyridine) ((3)MMLCT) state, originating from metal-metal interactions occurring in head-to-tail dimers (or polymers). A third broad band is shown by 1 and 4 under all concentration conditions and by 2 and 5 only in concentrated solutions and is attributed to excimeric species originating from pi-pi interactions due to stacking between polypyridine ligands.

  9. VARIABILITY OF WATER AND OXYGEN ABSORPTION BANDS IN THE DISK-INTEGRATED SPECTRA OF EARTH

    SciTech Connect

    Fujii, Yuka; Suto, Yasushi; Turner, Edwin L.

    2013-03-10

    We study the variability of major atmospheric absorption features in the disk-integrated spectra of Earth with future application to Earth-analogs in mind, concentrating on the diurnal timescale. We first analyze observations of Earth provided by the EPOXI mission, and find 5%-20% fractional variation of the absorption depths of H{sub 2}O and O{sub 2} bands, two molecules that have major signatures in the observed range. From a correlation analysis with the cloud map data from the Earth Observing Satellite (EOS), we find that their variation pattern is primarily due to the uneven cloud cover distribution. In order to account for the observed variation quantitatively, we consider a simple opaque cloud model, which assumes that the clouds totally block the spectral influence of the atmosphere below the cloud layer, equivalent to assuming that the incident light is completely scattered at the cloud top level. The model is reasonably successful, and reproduces the EPOXI data from the pixel-level EOS cloud/water vapor data. A difference in the diurnal variability patterns of H{sub 2}O and O{sub 2} bands is ascribed to the differing vertical and horizontal distribution of those molecular species in the atmosphere. On Earth, the inhomogeneous distribution of atmospheric water vapor is due to the existence of its exchange with liquid and solid phases of H{sub 2}O on the planet's surface on a timescale short compared with atmospheric mixing times. If such differences in variability patterns were detected in spectra of Earth-analogs, it would provide the information on the inhomogeneous composition of their atmospheres.

  10. Spitzer IRS (8-30 micron) Spectra of Basaltic Asteroids 1459 Magnya and 956 Elisa: Mineralogy and Thermal Properties

    NASA Technical Reports Server (NTRS)

    Lim, Lucy F.; Emery, J. P.; Moskovitz, N. A.

    2009-01-01

    We report preliminary results from Spitzer IRS (Infrared Spectrograph) spectroscopy of 956 Elisa, 1459 Magnya, and other small basaltic asteroids with the Spitzer IRS. Program targets include members of the dynamical family of the unique large differentiated asteroid 4 Vesta ("Vestoids"), several outer-main-belt basaltic asteroids whose orbits exclude them from originating on 4 Vesta, and the basaltic near-Earth asteroid 4055 Magellan. The preliminary thermal model (STM) fit to the 5--35 micron spectrum of 956 Elisa gives a radius of 5.4 +/- 0.3 km and a subsolar- point temperature of 282.2 +/- 0.5 K. This temperature corresponds to eta approximately equals 1.06 +/- 0.02, which is substantially higher than the eta approximately equals 0.756 characteristic of large main-belt asteroids. Unlike 4 Vesta and other large asteroids, therefore, 956 Elisa has significant thermal inertia in its surface layer. The wavelength of the Christiansen feature (emissivity maximum near 9 micron), the positions and shapes of the narrow maxima (10 micron, 11 micron) within the broad 9--14 micron silicate band, and the 19--20 micron minimum are consistent with features found in the laboratory spectra of diogenites and of low-Ca pyroxenes of similar composition (Wo<5, En50-En75).

  11. Investigation of absorption spectra of Gafchromic EBT2 film's components and their impact on UVR dosimetry

    NASA Astrophysics Data System (ADS)

    Aydarous, Abdulkadir

    2016-05-01

    The absorption spectra of the EBT2 film's components were investigated in conjunction with its use for UVA dosimetry. The polyester (topside) and adhesive layers of the EBT2 film have been gently removed. Gafchromic™ EBT2 films with and without the protected layers (polyester and adhesive) were exposed to UVR of 365 nm for different durations. Thereafter, the UV-visible spectra were measured using a UV-visible spectrophotometer (Model Spectro Dual Split Beam, UVS-2700). Films were digitized using a Nikon CanoScan 9000F Mark II flatbed scanner. The dosimetric characteristics including film's uniformity, reproducibility and post-irradiation development were investigated. The color development of EBT2 and new modified EBT2 (EBT2-M) films irradiated with UVA was relatively stable (less than 1%) immediately after exposure. Based on this study, the sensitivity of EBT2 to UVR with wavelength between ~350 nm and ~390 nm can significantly be enhanced if the adhesive layer (~25 μm) is removed. The polyester layer plays almost no part on absorbing UVR with wavelength between ~320 nm and ~390 nm. Furthermore, various sensitivities for the EBT2-M film has been established depending on the wavelength of analysis.

  12. Total Absorption Spectroscopy of Fission Fragments Relevant for Reactor Antineutrino Spectra and Decay Heat Calculations

    NASA Astrophysics Data System (ADS)

    Porta, A.; Zakari-Issoufou, A.-A.; Fallot, M.; Algora, A.; Tain, J. L.; Valencia, E.; Rice, S.; Bui, V. M.; Cormon, S.; Estienne, M.; Agramunt, J.; Äystö, J.; Bowry, M.; Briz, J. A.; Caballero-Folch, R.; Cano-Ott, D.; Cucouanes, A.; Elomaa, V.-V.; Eronen, T.; Estévez, E.; Farrelly, G. F.; Garcia, A. R.; Gelletly, W.; Gomez-Hornillos, M. B.; Gorlychev, V.; Hakala, J.; Jokinen, A.; Jordan, M. D.; Kankainen, A.; Karvonen, P.; Kolhinen, V. S.; Kondev, F. G.; Martinez, T.; Mendoza, E.; Molina, F.; Moore, I.; Perez-Cerdán, A. B.; Podolyák, Zs.; Penttilä, H.; Regan, P. H.; Reponen, M.; Rissanen, J.; Rubio, B.; Shiba, T.; Sonzogni, A. A.; Weber, C.

    2016-03-01

    Beta decay of fission products is at the origin of decay heat and antineutrino emission in nuclear reactors. Decay heat represents about 7% of the reactor power during operation and strongly impacts reactor safety. Reactor antineutrino detection is used in several fundamental neutrino physics experiments and it can also be used for reactor monitoring and non-proliferation purposes. 92,93Rb are two fission products of importance in reactor antineutrino spectra and decay heat, but their β-decay properties are not well known. New measurements of 92,93Rb β-decay properties have been performed at the IGISOL facility (Jyväskylä, Finland) using Total Absorption Spectroscopy (TAS). TAS is complementary to techniques based on Germanium detectors. It implies the use of a calorimeter to measure the total gamma intensity de-exciting each level in the daughter nucleus providing a direct measurement of the beta feeding. In these proceedings we present preliminary results for 93Rb, our measured beta feedings for 92Rb and we show the impact of these results on reactor antineutrino spectra and decay heat calculations.

  13. Source brightness fluctuation correction of solar absorption fourier transform mid infrared spectra

    NASA Astrophysics Data System (ADS)

    Ridder, T.; Warneke, T.; Notholt, J.

    2011-06-01

    The precision and accuracy of trace gas observations using solar absorption Fourier Transform infrared spectrometry depend on the stability of the light source. Fluctuations in the source brightness, however, cannot always be avoided. Current correction schemes, which calculate a corrected interferogram as the ratio of the raw DC interferogram and a smoothed DC interferogram, are applicable only to near infrared measurements. Spectra in the mid infrared spectral region below 2000 cm-1 are generally considered uncorrectable, if they are measured with a MCT detector. Such measurements introduce an unknown offset to MCT interferograms, which prevents the established source brightness fluctuation correction. This problem can be overcome by a determination of the offset using the modulation efficiency of the instrument. With known modulation efficiency the offset can be calculated, and the source brightness correction can be performed on the basis of offset-corrected interferograms. We present a source brightness fluctuation correction method which performs the smoothing of the raw DC interferogram in the interferogram domain by an application of a running mean instead of high-pass filtering the corresponding spectrum after Fourier transformation of the raw DC interferogram. This smoothing can be performed with the onboard software of commercial instruments. The improvement of MCT spectra and subsequent ozone profile and total column retrievals is demonstrated. Application to InSb interferograms in the near infrared spectral region proves the equivalence with the established correction scheme.

  14. DFT study of the effect of substituents on the absorption and emission spectra of Indigo

    PubMed Central

    2012-01-01

    Background Theoretical analyses of the indigo dye molecule and its derivatives with Chlorine (Cl), Sulfur (S), Selenium (Se) and Bromine (Br) substituents, as well as an analysis of the Hemi-Indigo molecule, were performed using the Gaussian 03 software package. Results Calculations were performed based on the framework of density functional theory (DFT) with the Becke 3- parameter-Lee-Yang-Parr (B3LYP) functional, where the 6-31 G(d,p) basis set was employed. The configuration interaction singles (CIS) method with the same basis set was employed for the analysis of excited states and for the acquisition of the emission spectra. Conclusions The presented absorption and emission spectra were affected by the substitution position. When a hydrogen atom of the molecule was substituted by Cl or Br, practically no change in the absorbed and emitted energies relative to those of the indigo molecule were observed; however, when N was substituted by S or Se, the absorbed and emitted energies increased. PMID:22809100

  15. Linewidth Extraction From the THz Absorption Spectra Using a Modified Lorentz Model

    NASA Astrophysics Data System (ADS)

    Li, Zhi; Zhang, Zhaohui; Zhao, Xiaoyan; Su, Haixia; Zhang, Han; Lan, Jinhui

    2013-10-01

    Identification of specific materials is one of the most promising THz applications. It is commonly achieved by comparing the experimental peak central frequencies of the transmission or absorption spectra with a database for known materials while neglecting the linewidths. However, due to the restriction of the signal-to-noise ratio, only a narrow band, extending from several hundred GHz to several THz, can be used. It is difficult to distinguish two materials from each other if their peaks' central frequencies are similar. In this paper, we present a modified Lorentz model by taking the scattering effect into account. The modified Lorentz model can be used for the extraction of reliable absorption peak parameters, i.e. the central frequency and linewidth. On comparison with our experiments, we observed that the parameters extracted using the modified Lorentz model in glutamine samples of different concentrations exhibited a better agreement than those obtained using the traditional model. Therefore, the utilization of the narrow THz band to identify materials can be improved by comparing both the central frequency and linewidth obtained from this method.

  16. Absorption spectra of isomeric OH adducts of 1,3,7-trimethylxanthine

    SciTech Connect

    Vinchurkar, M.S.; Rao, B.S.M.; Mohan, H.; Mittal, J.P.; Schmidt, K.H.; Jonah, C.D.

    1997-04-17

    The reactions of OH{sup .}, O{sup .-}, and SO{sub 4}{sup .-} with 1,3,7-trimethylxanthine (caffeine) were studied by pulse radiolysis with optical and conductance detection techniques. The absorption spectra of transients formed in OH{sup .} reaction in neutral solutions exhibited peaks at 310 and 335 nm, as well as a broad absorption maximum at 500 nm, which decayed by first-order kinetics. The rate (k = (4.0 {+-} 0.5) x 10{sup 4} s{sup -1}) of this decay is independent of pH in the range 4-9 and is in agreement with that determined from the conductance detection (k = 4 x 10{sup 4} s{sup -1}). The spectrum in acidic solutions has only a broad peak around 330 nm with no absorption in the higher wavelength region. The intermediates formed in reaction of O{sup .-} absorb around 310 and at 350 nm, and the first-order decay at the latter wavelength was not seen. The OH radical adds to C-4 (X-40H{sup .}) and C-8 (X-80H{sup .}) positions of caffeine in the ratio 1:2 as determined from the redox titration and conductivity measurements. H abstraction from the methyl group is an additional reaction channel in O{sup .-} reaction. Dehydroxylation of the X-40H{sup .} adduct occurs, whereas the X-80H{sup .} adduct does not undergo ring opening. The spectrum obtained for OH{sup .} reaction in oxygenated solutions is similar to that observed in SO{sub 4}{sup .-} reaction in basic solutions. 25 refs., 5 figs., 1 tab.

  17. Absorption spectra and photolysis of methyl peroxide in liquid and frozen water.

    PubMed

    Epstein, Scott A; Shemesh, Dorit; Tran, Van T; Nizkorodov, Sergey A; Gerber, R Benny

    2012-06-21

    Methyl peroxide (CH(3)OOH) is commonly found in atmospheric waters and ices in significant concentrations. It is the simplest organic peroxide and an important precursor to hydroxyl radical. Many studies have examined the photochemical behavior of gaseous CH(3)OOH; however, the photochemistry of liquid and frozen water solutions is poorly understood. We present a series of experiments and theoretical calculations designed to elucidate the photochemical behavior of CH(3)OOH dissolved in liquid water and ice over a range of temperatures. The molar extinction coefficients of aqueous CH(3)OOH are different from the gas phase, and they do not change upon freezing. Between -12 and 43 °C, the quantum yield of CH(3)OOH photolysis is described by the following equation: Φ(T) = exp((-2175 ± 448)1/T) + 7.66 ± 1.56). We use on-the-fly ab initio molecular dynamics simulations to model structures and absorption spectra of a bare CH(3)OOH molecule and a CH(3)OOH molecule immersed inside 20 water molecules at 50, 200, and 220 K. The simulations predict large sensitivity in the absorption spectrum of CH(3)OOH to temperature, with the spectrum narrowing and shifting to the blue under cryogenic conditions because of constrained dihedral motion around the O-O bond. The shift in the absorption spectrum is not observed in the experiment when the CH(3)OOH solution is frozen suggesting that CH(3)OOH remains in a liquid layer between the ice grains. Using the extinction coefficients and photolysis quantum yields obtained in this work, we show that under conditions with low temperatures, in the presence of clouds with a high liquid-water content and large solar zenith angles, the loss of CH(3)OOH by aqueous photolysis is responsible for up to 20% of the total loss of CH(3)OOH due to photolysis. Gas phase photolysis of CH(3)OOH dominates under all other conditions.

  18. c2d Spitzer IRS spectra of embedded low-mass young stars: gas-phase emission lines

    NASA Astrophysics Data System (ADS)

    Lahuis, F.; van Dishoeck, E. F.; Jørgensen, J. K.; Blake, G. A.; Evans, N. J.

    2010-09-01

    Context. A survey of mid-infrared gas-phase emission lines of H2, H2O and various atoms toward a sample of 43 embedded low-mass young stars in nearby star-forming regions is presented. The sources are selected from the Spitzer “Cores to Disks” (c2d) legacy program. Aims: The environment of embedded protostars is complex both in its physical structure (envelopes, outflows, jets, protostellar disks) and the physical processes (accretion, irradiation by UV and/or X-rays, excitation through slow and fast shocks) which take place. The mid-IR spectral range hosts a suite of diagnostic lines which can distinguish them. A key point is to spatially resolve the emission in the Spitzer-IRS spectra to separate extended PDR and shock emission from compact source emission associated with the circumstellar disk and jets. Methods: An optimal extraction method is used to separate both spatially unresolved (compact, up to a few hundred AU) and spatially resolved (extended, thousand AU or more) emission from the IRS spectra. The results are compared with the c2d disk sample and literature PDR and shock models to address the physical nature of the sources. Results: Both compact and extended emission features are observed. Warm (T_ex few hundred K) H2, observed through the pure rotational H2 S(0), S(1) and S(2) lines, and [S i] 25 μm emission is observed primarily in the extended component. [S i] is observed uniquely toward truly embedded sources and not toward disks. On the other hand hot (T_ex ⪆ 700 K) H2, observed primarily through the S(4) line, and [Ne ii] emission is seen mostly in the spatially unresolved component. [Fe ii] and [Si ii] lines are observed in both spatial components. Hot H2O emission is found in the spatially unresolved component of some sources. Conclusions: The observed emission on ≥1000 AU scales is characteristic of PDR emission and likely originates in the outflow cavities in the remnant envelope created by the stellar wind and jets from the embedded

  19. Role of thermal diffusion in cw IR laser absorption in gas mixtures.

    PubMed

    Maleissye, J T; Lempereur, F

    1982-01-15

    The absorption of radiation from a cw CO(2) laser by a mixture of absorbing SF(6) and transparent buffer gases has been measured as a function of pressure of added transparent gas (C(4)H(10)). The results are analyzed in terms of thermal diffusion of excited SF6 molecules out of the irradiation zone. In the 60-400-Torr pressure range, thermal difusion depletes the concentration of SF(6) so that the overall absorption is decreased and competes with the various channels of collisional relaxation which enhance absorption. An approximate semiempirical expression is used to determine the transient perturbation of concentration which occurs inside the laser beam.

  20. VizieR Online Data Catalog: Atomic lines in IR spectra for ultracool dwarfs (Lyubchik+, 2004)

    NASA Astrophysics Data System (ADS)

    Lyubchik, Y.; Jones, H. R. A.; Pavlenko, Y. V.; Viti, S.; Pickering, J. C.; Blackwell-Whitehead, R.

    2004-01-01

    Table 1 contains all identified lines with central intensities deeper than 0.8 of residual flux using "ultracool dwarf model" identifications. Table 2 investigates the sensitivity of priority 1 lines identified in Table 1 to temperature, gravity and metallicity. We compute some synthetic spectra for ultracool objects varying parameters of Teff, log g and metallicity to show the sensitivity of the central intensities of identified lines to these parameters. For our computations we chose the minimal step in model atmospheres grid: {Delta}Teff=100K, {Delta}logg=0.5, {Delta}[M/H]=-0.5. STeff shows the dependence of residual fluxes on effective temperature. For comparison a 2100/5.0/0.0 synthetic spectrum was used. One can see that only a few lines show strong temperature dependence for {Delta}=100K. The NextGen 2000/4.5/0.0 model was used with 2000/5.0/0.0 to test gravity sensitivity. The dependence for {Delta}(log g)=0.5 is also relatively weak for most lines. The NextGen model atmospheres 2000/5.0/-0.5 and 2000/5.0/0.0 to test metallicity sensitivity. The metallicity dependence is relatively high for all lines. (2 data files).

  1. The 3D Structure of Eta Carinae's Nebula: A Definitive Picture from High-Dispersion Near-IR Spectra

    NASA Technical Reports Server (NTRS)

    Smith, N.

    2006-01-01

    High resolution long-slit spectra obtained with the Phoenix spectrograph on Gemini South provide our most accurate probe of the 3D structure of the Homunculus Nebula around Eta Carinae. Emission from molecular hydrogen at 2.122 microns traces a very thin outer skin, which contains the vast majority of the more than 10 solar masses of material in the nebula. This emission, in turn, yields our first definitive picture of the exact shape of the nebula, plus the latitude dependence of the mass-loss rate, speed, kinetic energy, shell thickness, and other properties associated with Eta Car's 19th century explosion. This will be critical for testing any models for the outburst mechanism. A preliminary analysis suggests that explosion from a critically rotating star was the dominant mechanism that gave rise to both the bipolar shape of the nebula and the production of its equatorial disk. [Fe II] emission in the near IR traces a geometrically thicker but less massive shell found on the inner surface of the H2 skin --- this is either a reverse shock that decelerates Eta Car's wind or a warm PDR. [Fe Ill emission also clarifies the structure of an inner "Little Homunculus" seen previously in HST/STlS spectra. Comparing these two tracers of cool molecular gas and warm partially-ionized gas resolves some significant confusion about the complex structure noted in previous studies.

  2. Charon's, Hydra's, and Nix's near IR spectra as seen by New Horizons

    NASA Astrophysics Data System (ADS)

    Dalle Ore, Cristina M.; Cook, Jason C.; Cruikshank, Dale P.; Protopapa, Silvia; Grundy, William M.; Olkin, Catherine B.; Ennico, Kimberly; Stern, S. Alan; Weaver, Harold A.; Young, Leslie; New Horizons Surface Composition Theme Team

    2016-10-01

    Charon, Pluto's largest satellite, is a predominantly grey-color icy world covered mostly in H2O ice, with spectral evidence for NH3 and/or its hydrates, as previously reported (Cook et al. 2007, ApJ. 663, 1406; Verbiscer et al. 2007, LPSC 38, 2318; Merlin et al. 2010, Icarus, 210, 930; Cook et al. 2014, AAS/DPS Abstracts, 46, #401.04; Holler et al. 2016, submitted, arXiv:1606.05695). In their 2010 work, Merlin et al. reported the presence of ammonia species along with H2O ice both in crystalline and amorphous phase. They introduced a blue component to model the slope present in their near-IR observations, which could not be otherwise reproduced without the adoption of an ad hoc component. The presence of ammonia and H2O in its crystalline form prompted Cook et al. (2007) to suggest cryovolcanism as a favored mechanism of resurfacing although the geological evidence for volcanism reported from New Horizons imaging observations does not appear to be recent (Moore et al. Science, 351, 1284).We analyze one of New Horizons' observations of Charon taken with the LEISA imaging spectrometer from a distance of ~82,000 km at high spatial resolution (4.9 km/pixel). Images from the New Horizons spacecraft reveal a surface with terrains of seemingly different ages and a moderate degree of localized coloration.Hydra was observed by New Horizons at a distance 240,000 and 370,000 hardly resolving its disk. Nix on the other hand was observed from a much more favorable distance of 60,000 and 162,000 km revealing a nearly uniform surface coloration and structure.Although Hydra could hardly be resolved at the flyby distance we have obtained its spectral signature and we compare it with those of Charon and Nix. A feature at ~2.2 µm, corresponding to the NH3 and/or NH3 hydrates, is visible subtly on Charon and clearly on Hydra and Nix hinting at the possibility that NH3 might be less volatile than previously thought and making the need for recent cryovolcanism less crucial

  3. Observation of temperature dependence of the IR hydroxyl absorption bands in silica optical fiber

    NASA Astrophysics Data System (ADS)

    Yu, Li; Bonnell, Elizabeth; Homa, Daniel; Pickrell, Gary; Wang, Anbo; Ohodnicki, P. R.; Woodruff, Steven; Chorpening, Benjamin; Buric, Michael

    2016-07-01

    This study reports on the temperature dependent behavior of silica based optical fibers upon exposure to high temperatures in hydrogen and ambient air. The hydroxyl absorption bands in the wavelength range of 1000-2500 nm of commercially available multimode fibers with pure silica and germanium doped cores were examined in the temperature range of 20-800 °C. Two hydroxyl-related infrared absorption bands were observed: ∼2200 nm assigned to the combination of the vibration mode of Si-OH bending and the fundamental hydroxyl stretching mode, and ∼1390 nm assigned to the first overtone of the hydroxyl stretching. The absorption in the 2200 nm band decreased in intensity, while the 1390 nm absorption band shifted to longer wavelengths with an increase in temperature. The observed phenomena were reversible with temperature and suspected to be due, in part, to the conversion of the OH spectral components into each other and structural relaxation.

  4. Computing the Absorption and Emission Spectra of 5-Methylcytidine in Different Solvents: A Test-Case for Different Solvation Models.

    PubMed

    Martínez-Fernández, L; Pepino, A J; Segarra-Martí, J; Banyasz, A; Garavelli, M; Improta, R

    2016-09-13

    The optical spectra of 5-methylcytidine in three different solvents (tetrahydrofuran, acetonitrile, and water) is measured, showing that both the absorption and the emission maximum in water are significantly blue-shifted (0.08 eV). The absorption spectra are simulated based on CAM-B3LYP/TD-DFT calculations but including solvent effects with three different approaches: (i) a hybrid implicit/explicit full quantum mechanical approach, (ii) a mixed QM/MM static approach, and (iii) a QM/MM method exploiting the structures issuing from molecular dynamics classical simulations. Ab-initio Molecular dynamics simulations based on CAM-B3LYP functionals have also been performed. The adopted approaches all reproduce the main features of the experimental spectra, giving insights on the chemical-physical effects responsible for the solvent shifts in the spectra of 5-methylcytidine and providing the basis for discussing advantages and limitations of the adopted solvation models. PMID:27529792

  5. Nonlinear absorption and transmission properties of Ge, Te and InAs using tuneable IR FEL

    SciTech Connect

    Amirmadhi, F.; Becker, K.; Brau, C.A.

    1995-12-31

    Nonlinear absorption properties of Ge, Te and InAs are being investigated using the transmission of FEL optical pulses through these semiconductors (z-scan method). Wavelength, intensity and macropulse dependence are used to differentiate between two-photon and free-carrier absorption properties of these materials. Macropulse dependence is resolved by using a Pockles Cell to chop the 4-{mu}s macropulse down to 100 ns. Results of these experiments will be presented and discussed.

  6. FT-IR, FT-Raman, NMR and UV-Vis spectra and DFT calculations of 5-bromo-2-ethoxyphenylboronic acid (monomer and dimer structures).

    PubMed

    Sas, E B; Kose, E; Kurt, M; Karabacak, M

    2015-02-25

    In this study, the Fourier Transform Infrared (FT-IR) and Fourier Transform Raman (FT-Raman) spectra of 5-bromo-2-ethoxyphenylboronic acid (5Br2EPBA) are recorded in the solid phase in the region 4000-400 cm(-1) and 3500-10 cm(-1), respectively. The (1)H, (13)C and DEPT nuclear magnetic resonance (NMR) spectra are recorded in DMSO solution. The UV-Vis absorption spectrum of 5Br2EPBA is saved in the range of 200-400 nm in ethanol and water. The following theoretical calculations for monomeric and dimeric structures are supported by experimental results. The molecular geometry and vibrational frequencies in the ground state are calculated by using DFT methods with 6-31G(d,p) and 6-311G(d,p) basis sets. There are four conformers for the present molecule. The computational results diagnose the most stable conformer of 5Br2EPBA as Trans-Cis (TC) form. The complete assignments are performed on the basis of the total energy distribution (TED) of vibrational modes, calculated with scaled quantum mechanics (SQM) method in parallel quantum solutions (PQS) program. The (1)H and (13)C NMR chemical shifts of 5Br2EPBA molecule are calculated by using the Gauge Invariant Atomic Orbital (GIAO) method in DMSO and gas phase for monomer and dimer structures of the most stable conformer. Moreover, electronic properties, such as the HOMO and LUMO energies (by TD-DFT and CIS methods) and molecular electrostatic potential surface (MEPs) are investigated. Stability of the molecule arising from hyper-conjugative interactions, charge delocalization is analyzed using natural bond orbital (NBO) analysis. Nonlinear optical (NLO) properties and thermodynamic features are presented. All calculated results are compared with the experimental data of the title molecule. The correlation of theoretical and experimental results provides a detailed description of the structural and physicochemical properties of the title molecule.

  7. FT-IR, FT-Raman, NMR and UV-Vis spectra and DFT calculations of 5-bromo-2-ethoxyphenylboronic acid (monomer and dimer structures).

    PubMed

    Sas, E B; Kose, E; Kurt, M; Karabacak, M

    2015-02-25

    In this study, the Fourier Transform Infrared (FT-IR) and Fourier Transform Raman (FT-Raman) spectra of 5-bromo-2-ethoxyphenylboronic acid (5Br2EPBA) are recorded in the solid phase in the region 4000-400 cm(-1) and 3500-10 cm(-1), respectively. The (1)H, (13)C and DEPT nuclear magnetic resonance (NMR) spectra are recorded in DMSO solution. The UV-Vis absorption spectrum of 5Br2EPBA is saved in the range of 200-400 nm in ethanol and water. The following theoretical calculations for monomeric and dimeric structures are supported by experimental results. The molecular geometry and vibrational frequencies in the ground state are calculated by using DFT methods with 6-31G(d,p) and 6-311G(d,p) basis sets. There are four conformers for the present molecule. The computational results diagnose the most stable conformer of 5Br2EPBA as Trans-Cis (TC) form. The complete assignments are performed on the basis of the total energy distribution (TED) of vibrational modes, calculated with scaled quantum mechanics (SQM) method in parallel quantum solutions (PQS) program. The (1)H and (13)C NMR chemical shifts of 5Br2EPBA molecule are calculated by using the Gauge Invariant Atomic Orbital (GIAO) method in DMSO and gas phase for monomer and dimer structures of the most stable conformer. Moreover, electronic properties, such as the HOMO and LUMO energies (by TD-DFT and CIS methods) and molecular electrostatic potential surface (MEPs) are investigated. Stability of the molecule arising from hyper-conjugative interactions, charge delocalization is analyzed using natural bond orbital (NBO) analysis. Nonlinear optical (NLO) properties and thermodynamic features are presented. All calculated results are compared with the experimental data of the title molecule. The correlation of theoretical and experimental results provides a detailed description of the structural and physicochemical properties of the title molecule. PMID:25305625

  8. FT-IR, FT-Raman, NMR and UV-Vis spectra and DFT calculations of 5-bromo-2-ethoxyphenylboronic acid (monomer and dimer structures)

    NASA Astrophysics Data System (ADS)

    Sas, E. B.; Kose, E.; Kurt, M.; Karabacak, M.

    2015-02-01

    In this study, the Fourier Transform Infrared (FT-IR) and Fourier Transform Raman (FT-Raman) spectra of 5-bromo-2-ethoxyphenylboronic acid (5Br2EPBA) are recorded in the solid phase in the region 4000-400 cm-1 and 3500-10 cm-1, respectively. The 1H, 13C and DEPT nuclear magnetic resonance (NMR) spectra are recorded in DMSO solution. The UV-Vis absorption spectrum of 5Br2EPBA is saved in the range of 200-400 nm in ethanol and water. The following theoretical calculations for monomeric and dimeric structures are supported by experimental results. The molecular geometry and vibrational frequencies in the ground state are calculated by using DFT methods with 6-31G(d,p) and 6-311G(d,p) basis sets. There are four conformers for the present molecule. The computational results diagnose the most stable conformer of 5Br2EPBA as Trans-Cis (TC) form. The complete assignments are performed on the basis of the total energy distribution (TED) of vibrational modes, calculated with scaled quantum mechanics (SQM) method in parallel quantum solutions (PQS) program. The 1H and 13C NMR chemical shifts of 5Br2EPBA molecule are calculated by using the Gauge Invariant Atomic Orbital (GIAO) method in DMSO and gas phase for monomer and dimer structures of the most stable conformer. Moreover, electronic properties, such as the HOMO and LUMO energies (by TD-DFT and CIS methods) and molecular electrostatic potential surface (MEPs) are investigated. Stability of the molecule arising from hyper-conjugative interactions, charge delocalization is analyzed using natural bond orbital (NBO) analysis. Nonlinear optical (NLO) properties and thermodynamic features are presented. All calculated results are compared with the experimental data of the title molecule. The correlation of theoretical and experimental results provides a detailed description of the structural and physicochemical properties of the title molecule.

  9. Optical Absorption Spectra and Excitons of Dye-Substrate Interfaces: Catechol on TiO2(110).

    PubMed

    Mowbray, Duncan John; Migani, Annapaola

    2016-06-14

    Optimizing the photovoltaic efficiency of dye-sensitized solar cells (DSSC) based on staggered gap heterojunctions requires a detailed understanding of sub-band gap transitions in the visible from the dye directly to the substrate's conduction band (CB) (type-II DSSCs). Here, we calculate the optical absorption spectra and spatial distribution of bright excitons in the visible region for a prototypical DSSC, catechol on rutile TiO2(110), as a function of coverage and deprotonation of the OH anchoring groups. This is accomplished by solving the Bethe-Salpeter equation (BSE) based on hybrid range-separated exchange and correlation functional (HSE06) density functional theory (DFT) calculations. Such a treatment is necessary to accurately describe the interfacial level alignment and the weakly bound charge transfer transitions that are the dominant absorption mechanism in type-II DSSCs. Our HSE06 BSE spectra agree semiquantitatively with spectra measured for catechol on anatase TiO2 nanoparticles. Our results suggest deprotonation of catechol's OH anchoring groups, while being nearly isoenergetic at high coverages, shifts the onset of the absorption spectra to lower energies, with a concomitant increase in photovoltaic efficiency. Further, the most relevant bright excitons in the visible region are rather intense charge transfer transitions with the electron and hole spatially separated in both the [110] and [001] directions. Such detailed information on the absorption spectra and excitons is only accessible via periodic models of the combined dye-substrate interface. PMID:27183273

  10. The biomolecule of 5-bromocytosine: FT-IR and FT-Raman spectra and DFT calculations. Identification of the tautomers in the isolated state and simulation the spectra in the solid state.

    PubMed

    Alcolea Palafox, M; Rastogi, V K; Kumar, Satendra; Joe, Hubert

    2013-07-01

    An accurate assignment of the IR spectrum in Ar matrix of 5-bromocytosine and of the IR and Raman spectra in the solid state was carried out. For this purpose Density functional calculations (DFTs) were performed to clarify wavenumber assignments of the experimental observed bands. The calculated values were scaled using scaling equations and they were compared with IR and Raman experimental data. Good reproduction of the experimental wavenumbers is obtained and the% error is very small in the majority of cases. In the isolated state all the tautomer forms of 5-bromocytosine were determined and optimized. The wavenumbers corresponding to C1 and C2b tautomers were identified and assigned in the IR experimental spectrum reported in Ar matrix. Our study confirms the existence of at least two tautomers, the amino-oxo and the amino-hydroxy in the isolated state. In the solid state the FT-IR and FT-Raman spectra of 5-bromocytosine in the powder form were recorded in the region 400-4000 cm(-1) and 50-3500 cm(-1), respectively. The unit cell found in the crystal was simulated as a tetramer form in three tautomers. Thus, it has been possible to assign all the 33 normal modes of vibration. The study indicates that the features, that are the characteristic of the vibrational spectra of cytosine, are retained by the spectra of 5-bromocytosine and it exists in the solid phase in the amino-oxo form.

  11. Visible and Near-IR Reflectance Spectra of Smectite Acquired Under Dry Conditions for Interpretation of Martian Surface Mineralogy

    NASA Technical Reports Server (NTRS)

    Morris, Richard V.; Achilles, Cherie N; Archer, Paul D.; Graff, Trevor G.; Agresti, David G.; Ming, Douglas W; Golden, Dadi C.; Mertzman, Stanley A.

    2011-01-01

    Visible and near-IR (VNIR) spectra from the MEx OMEGA and the MRO CRISM hyper-spectral imaging instruments have spectral features associated with the H2O molecule and M OH functional groups (M = Mg, Fe, Al, and Si). Mineralogical assignments of martian spectral features are made on the basis of laboratory VNIR spectra, which were often acquired under ambient (humid) conditions. Smectites like nontronite, saponite, and montmorillionite have interlayer H2O that is exchangeable with their environment, and we have acquired smectite reflectance spectra under dry environmental conditions for interpretation of martian surface mineralogy. We also obtained chemical, Moessbauer (MB), powder X-ray diffraction (XRD), and thermogravimetric (TG) data to understand variations in spectral properties. VNIR spectra were recorded in humid lab air at 25-35C, in a dynamic dry N2 atmosphere (50-150 ppmv H2O) after exposing the smectite samples (5 nontronites, 3 montmorillionites, and 1 saponite) to that atmosphere for up to approximately l000 hr each at 25-35C, approximately 105C, and approximately 215C, and after re-exposure to humid lab air. Heating at 105C and 215C for approximately 1000 hr is taken as a surrogate for geologic time scales at lower temperatures. Upon exposure to dry N2, the position and intensity of spectral features associated with M-OH were relatively insensitive to the dry environment, and the spectral features associated with H2O (e.g., approximately 1.90 micrometers) decreased in intensity and are sometimes not detectable by the end of the 215C heating step. The position and intensity of H2O spectral features recovered upon re-exposure to lab air. XRD data show interlayer collapse for the nontronites and Namontmorillionites, with the interlayer remaining collapsed for the latter after re-exposure to lab air. The interlayer did not collapse for the saponite and Ca-montmorillionite. TG data show that the concentration of H2O derived from structural OH was invariant

  12. Relaxation mechanism of β-carotene from S2 (1Bu(+)) state to S1 (2Ag(-)) state: femtosecond time-resolved near-IR absorption and stimulated resonance Raman studies in 900-1550 nm region.

    PubMed

    Takaya, Tomohisa; Iwata, Koichi

    2014-06-12

    Carotenoids have two major low-lying excited states, the second lowest (S2 (1Bu(+))) and the lowest (S1 (2Ag(-))) excited singlet states, both of which are suggested to be involved in the energy transfer processes in light-harvesting complexes. Studying vibrational dynamics of S2 carotenoids requires ultrafast time-resolved near-IR Raman spectroscopy, although it has much less sensitivity than visible Raman spectroscopy. In this study, the relaxation mechanism of β-carotene from the S2 state to the S1 state is investigated by femtosecond time-resolved multiplex near-IR absorption and stimulated Raman spectroscopy. The energy gap between the S2 and S1 states is estimated to be 6780 cm(-1) from near-IR transient absorption spectra. The near-IR stimulated Raman spectrum of S2 β-carotene show three bands at 1580, 1240, and 1050 cm(-1). When excess energy of 4000 cm(-1) is added, the S1 C═C stretch band shows a large upshift with a time constant of 0.2 ps. The fast upshift is explained by a model that excess energy generated by internal conversion from the S2 state to the S1 state is selectively accepted by one of the vibronic levels of the S1 state and is redistributed among all the vibrational modes.

  13. Soft X-ray absorption spectra of aqueous salt solutions with highly charged cations in liquid microjets

    SciTech Connect

    Schwartz, Craig P.; Uejio, Janel S.; Duffin, Andrew M.; Drisdell, Walter S.; Smith, Jared D.; Saykally, Richard J.

    2010-03-11

    X-ray absorption spectra of 1M aqueous solutions of indium (III) chloride, yttrium (III) bromide, lanthanum (III) chloride, tin (IV) chloride and chromium (III) chloride have been measured at the oxygen K-edge. Relatively minor changes are observed in the spectra compared to that of pure water. SnCl{sub 4} and CrCl{sub 3} exhibit a new onset feature which is attributed to formation of hydroxide or other complex molecules in the solution. At higher energy, only relatively minor, but salt-specific changes in the spectra occur. The small magnitude of the observed spectral changes is ascribed to offsetting perturbations by the cations and anions.

  14. Signatures in vibrational and UV-visible absorption spectra for identifying cyclic hydrocarbons by graphene fragments

    NASA Astrophysics Data System (ADS)

    Meng, Yan; Wu, Qi; Chen, Lei; Wangmo, Sonam; Gao, Yang; Wang, Zhigang; Zhang, Rui-Qin; Ding, Dajun; Niehaus, Thomas A.; Frauenheim, Thomas

    2013-11-01

    To promote possible applications of graphene in molecular identification based on stacking effects, in particular in recognizing aromatic amino acids and even sequencing nucleobases in life sciences, we comprehensively study the interaction between graphene segments and different cyclic organic hydrocarbons including benzene (C6H6), cyclohexane (C6H12), benzyne (C6H4), cyclohexene (C6H10), 1,3-cyclohexadiene (C6H8(1)) and 1,4-cyclohexadiene (C6H8(2)), using the density-functional tight-binding (DFTB) method. Interestingly, we find obviously different characteristics in Raman vibrational and ultraviolet visible absorption spectra of the small molecules adsorbed on the graphene sheet. Specifically, we find that both spectra involve clearly different characteristic peaks, belonging to the different small molecules upon adsorption, with the ones of ionized molecules being more substantial. Further analysis shows that the adsorptions are almost all due to the presence of dispersion energy in neutral cases and involve charge transfer from the graphene to the small molecules. In contrast, the main binding force in the ionic adsorption systems is the electronic interaction. The results present clear signatures that can be used to recognize different kinds of aromatic hydrocarbon rings on graphene sheets. We expect that our findings will be helpful for designing molecular recognition devices using graphene.To promote possible applications of graphene in molecular identification based on stacking effects, in particular in recognizing aromatic amino acids and even sequencing nucleobases in life sciences, we comprehensively study the interaction between graphene segments and different cyclic organic hydrocarbons including benzene (C6H6), cyclohexane (C6H12), benzyne (C6H4), cyclohexene (C6H10), 1,3-cyclohexadiene (C6H8(1)) and 1,4-cyclohexadiene (C6H8(2)), using the density-functional tight-binding (DFTB) method. Interestingly, we find obviously different characteristics in

  15. FT-IR and Raman spectra, ab initio and density functional computations of the vibrational spectra, molecular geometries and atomic charges of uracil and 5-methyluracil (thymine).

    PubMed

    Singh, J S

    2015-02-25

    FT-IR (400-4000 cm(-1)) and Raman spectra (200-4000 cm(-1)) of uracil and 5-methyluracil (thymine) have been recorded and analyzed. The optimized molecular geometries, atomic polar tensor (APT) charges and vibrational characteristics have been studied theoretically using restricted Hartree-Fock (RHF) and density functional theory (DFT) methods. Using the Becke's exchange in conjunction with Lee-Yang-Parr's correlation functional and Becke's three-parameter hybrid method (B3LYP), the ab initio and DFT calculations were carried out to study the optimized molecular fundamental vibrational frequencies for uracil and 5-methyluracil (thymine) by employing Gaussian-03 program. The fundamental vibrational frequencies along with their corresponding intensities in IR and Raman activities and depolarization ratios of the Raman lines have also been calculated using the RHF and DFT methods employing different basis sets. In quantum chemical calculations, most of the B3LYP/6-311++G(∗∗) vibrational frequencies are in excellent agreement with the available experimental assignments and helped to propose in the reassignments of some missing frequencies in experimental study. Assuming under the Cs point group for both molecules, the distribution of normal mode of vibrations between the two species as planar (a') and non-planar (a″) for all 39 normal vibrational modes of 5-methyluracil are given by 26a'+13a″, of which 30 modes (21a'+9a″) correspond to the uracil moiety and 9 modes (5a'+4a″) to the CH3 group. Consistent assignments have been made for the internal modes of CH3 group, especially for the anti-symmetric CH3 stretching and bending modes. A possible explanation could be the planarity of pyrimidine ring and non-planarity at carbon site of methyl group which might cause the splitting of frequencies including three components due to the substitution of CH3 group at the site of C5 atom on pyrimidine ring of uracil. The three non-equivalent CH bonds of CH3 group are

  16. Detection of water vapour absorption around 363nm in measured atmospheric absorption spectra and its effect on DOAS evaluations

    NASA Astrophysics Data System (ADS)

    Lampel, Johannes; Polyansky, Oleg. L.; Kyuberis, Alexandra A.; Zobov, Nikolai F.; Tennyson, Jonathan; Lodi, Lorenzo; Pöhler, Denis; Frieß, Udo; Platt, Ulrich; Beirle, Steffen; Wagner, Thomas

    2016-04-01

    Water vapour is known to absorb light from the microwave region to the blue part of the visible spectrum at a decreasing magnitude. Ab-initio approaches to model individual absorption lines of the gaseous water molecule predict absorption lines until its dissociation limit at 243 nm. We present first evidence of water vapour absorption at 363 nm from field measurements based on the POKAZATEL absorption line list by Polyansky et al. (2016) using data from Multi-Axis differential optical absorption spectroscopy (MAX-DOAS) and Longpath (LP)-DOAS measurements. The predicted absorptions contribute significantly to the observed optical depths with up to 2 × 10‑3. Their magnitude correlates well (R2 = 0.89) to simultaneously measured well-established water vapour absorptions in the blue spectral range from 452-499 nm, but is underestimated by a factor of 2.6 ± 0.6 in the ab-initio model. At a spectral resolution of 0.5nm this leads to a maximum absorption cross-section value of 5.4 × 10‑27 cm2/molec at 362.3nm. The results are independent of the employed cross-section data to compensate for the overlayed absorption of the oxygen dimer O4. The newly found absorption can have a significant impact on the spectral retrieval of absorbing trace-gas species in the spectral range around 363 nm. Its effect on the spectral analysis of O4, HONO and OClO are discussed.

  17. MID-IR SPECTRA OF TYPE Ia SN 2014J IN M82 SPANNING THE FIRST 4 MONTHS

    SciTech Connect

    Telesco, Charles M.; Li, Dan; Barnes, Peter J.; Mariñas, Naibí; Zhang, Han; Höflich, Peter; Álvarez, Carlos; Fernández, Sergio; Rebolo, Rafael; Hough, James H.; Levenson, N. A.; Pantin, Eric; Roche, Patrick E-mail: phoeflich77@gmail.com

    2015-01-10

    We present a time series of 8-13 μm spectra and photometry for SN 2014J obtained 57, 81, 108, and 137 days after the explosion using CanariCam on the Gran Telescopio Canarias. This is the first mid-IR time series ever obtained for a Type Ia supernova (SN Ia). These observations can be understood within the framework of the delayed detonation model and the production of ∼0.6 M {sub ☉} of {sup 56}Ni, consistent with the observed brightness, the brightness decline relation, and the γ-ray fluxes. The [Co III] line at 11.888 μm is particularly useful for evaluating the time evolution of the photosphere and measuring the amount of {sup 56}Ni and thus the mass of the ejecta. Late-time line profiles of SN 2014J are rather symmetric and not shifted in the rest frame. We see argon emission, which provides a unique probe of mixing in the transition layer between incomplete burning and nuclear statistical equilibrium. We may see [Fe III] and [Ni IV] emission, both of which are observed to be substantially stronger than indicated by our models. If the latter identification is correct, then we are likely observing stable Ni, which might imply central mixing. In addition, electron capture, also required for stable Ni, requires densities larger than ∼1 × 10{sup 9} g cm{sup –3}, which are expected to be present only in white dwarfs close to the Chandrasekhar limit. This study demonstrates that mid-IR studies of SNe Ia are feasible from the ground and provide unique information, but it also indicates the need for better atomic data.

  18. High-Velocity Absorption Features in FUSE Spectra of Eta Carinae

    NASA Astrophysics Data System (ADS)

    Sonneborn, G.; Iping, R. C.; Gull, T. R.; Vieira, G.

    2002-12-01

    Numerous broad (200 to 1000 km/sec) features in the FUSE spectrum (905-1187 A) of eta Carinae are identified as absorption by a forest of high-velocity narrow lines formed in the expanding circumstellar envelope. These features were previously thought to be P-Cygni lines arising in the wind of the central star. The features span a heliocentric velocity range of -140 to -580 km/sec and are seen prominently in low-ionization ground-state transitions (e.g. N I 1134-35, Fe II 1145-42, 1133, 1127-22, P II 1153, C I 1158) in addition to C III] 1176 A. The high-velocity components of the FUSE transitions have depths about 50% below the continuum. The identifications are consistent with the complex velocity structures seen in ground- and excited-state transitions of Mg I, Mg II, Fe II, V II, etc observed in STIS/E230H spectra (see accompanying posters by Gull, Vieira, and Danks). The origin of other broad features of similar width and depth in the FUSE spectrum, but without low-velocity ISM absorption, are unidentified. However, they are suspected of being absorption of singly-ionized iron-peak elements (e.g. Fe II, V II, Cr II) out of excited levels 1,000 to 20,000 cmE-1 above the ground state. The high-velocity features seen in Fe II 1145 are also present in Fe II 1608 (STIS/E140M), but are highly saturated in the latter. Since these transitions have nearly identical log (flambda) (1.998 vs. 2.080), the differences in the profiles are attributable to the different aperture sizes used (30x30 arcsec for FUSE, 0.2x0.2 arcsec for STIS/E140M). The high-velocity gas appears to be very patchy or has a small covering factor near the central star. Eta Carinae has been observed several times by FUSE over the past three years. The FUSE flux levels and spectral features in eta Car are essentially unchanged over the 2000 March to June 2002 period, establishing a baseline far-UV spectrum in advance of the predicted spectroscopic miniumum in 2003.

  19. High-Velocity Absorption Features in FUSE Spectra of Eta Carinae

    NASA Technical Reports Server (NTRS)

    Sonneborn, G.; Iping, R. C.; Gull, T. R.; Vieira, G.

    2003-01-01

    Numerous broad (200 to 1000 km/sec) features in the FUSE spectrum (905-1187 A) of eta Carinae are identified as absorption by a forest of high-velocity narrow lines formed in the expanding circumstellar envelope. These features were previously thought to be P-Cygni lines arising in the wind of the central star. The features span a heliocentric velocity range of -140 to -580 km/sec and are seen prominently in low-ionization ground-state transitions (e.g. N I 1134-35, Fe II 1145-42, 1133, 1127- 22, P II 1153, C I 1158) in addition to C III] 1176 A. The high-velocity components of the FUSE transitions have depths about 50% below the continuum. The identifications are consistent with the complex velocity structures seen in ground- and excited-state transitions of Mg I, Mg 11, Fe II, V II, etc observed in STIS/E230H spectra. The origin of other broad features of similar width and depth in the FUSE spectrum, but without low-velocity ISM absorption, are unidentified. However, they are suspected of being absorption of singly-ionized iron-peak elements (e.g. Fe II, V II, Cr II) out of excited levels 1,000 to 20,000 cmE-l above the ground state. The high-velocity features seen in Fe II 1145 are also present in Fe II 1608 (STIS/E140M), but are highly saturated in the latter. Since these transitions have nearly identical log (flambda) (1.998 vs. 2.080), the differences in the profiles are attributable to the different aperture sizes used (30 x 30 arcsec for FUSE, 0.2 x 0.2 arcsec for STIS/E140M). The high-velocity gas appears to be very patchy or has a small covering factor near the central star. Eta Carinae has been observed several times by FUSE over the past three years. The FUSE flux levels and spectral features in eta Car are essentially unchanged over the 2000 March to June 2002 period, establishing a baseline far-UV spectrum in advance of the predicted spectroscopic minimum in 2003.

  20. Wavelet based de-noising of breath air absorption spectra profiles for improved classification by principal component analysis

    NASA Astrophysics Data System (ADS)

    Kistenev, Yu. V.; Shapovalov, A. V.; Borisov, A. V.; Vrazhnov, D. A.; Nikolaev, V. V.; Nikiforova, O. Yu.

    2015-11-01

    The comparison results of different mother wavelets used for de-noising of model and experimental data which were presented by profiles of absorption spectra of exhaled air are presented. The impact of wavelets de-noising on classification quality made by principal component analysis are also discussed.

  1. Optical Absorption Spectra of Cr3+ and Cr4+ in Sr3Ga2Ge4O14 Garnet Crystals

    NASA Astrophysics Data System (ADS)

    Xu, Jun; Deng, Peizhen; Zhang, Qiang; Gan, Fuxi

    1995-07-01

    Single crystals of Sr3Ga2Ge4O14:Cr are grown by the Czochralski method. The polarized optical absorption spectra of Cr in visible and near-infrared wavelength are presented and analyzed. It is suggested that Cr enters the octahedral and tetrahedral positions as Cr3+ and Cr4+ respectively.

  2. Gravitationally redshifted absorption lines in the X-ray burst spectra of a neutron star.

    PubMed

    Cottam, J; Paerels, F; Mendez, M

    2002-11-01

    The fundamental properties of neutron stars provide a direct test of the equation of state of cold nuclear matter, a relationship between pressure and density that is determined by the physics of the strong interactions between the particles that constitute the star. The most straightforward method of determining these properties is by measuring the gravitational redshift of spectral lines produced in the neutron star photosphere. The equation of state implies a mass-radius relation, while a measurement of the gravitational redshift at the surface of a neutron star provides a direct constraint on the mass-to-radius ratio. Here we report the discovery of significant absorption lines in the spectra of 28 bursts of the low-mass X-ray binary EXO0748-676. We identify the most significant features with the Fe XXVI and XXV n = 2-3 and O VIII n = 1-2 transitions, all with a redshift of z = 0.35, identical within small uncertainties for the respective transitions. For an astrophysically plausible range of masses (M approximately 1.3-2.0 solar masses; refs 2-5), this value is completely consistent with models of neutron stars composed of normal nuclear matter, while it excludes some models in which the neutron stars are made of more exotic matter. PMID:12422210

  3. Temporal-frequency spectra for plane and spherical waves in a millimetric wave absorption band

    NASA Astrophysics Data System (ADS)

    Siqueira, Glaucio L.; Cole, Roy S.

    1991-02-01

    Complete analytical expressions for the temporal power spectral density functions in a millimetric wave absorption region for plane and spherical waves have been developed for both amplitude and phase fluctuations due to atmospheric turbulence. Asymptotic expressions for both high and low scintillation frequencies are derived. Theoretical expressions for the differential phase power spectrum (i.e., the phase difference between two frequencies) are also presented. Experimental results of amplitude and differential phase scintillations measured on a 4.1-km link across central London, are presented. Results show that the plane wave case gives the best agreement with theory for this particular link. It is also shown that neglecting the cross-spectral density term at the higher scintillation frequencies for the differential phase spectrum can lead to a large difference between the theoretical and experimental power spectra. In particular, for a small frequency separation and a large value of the outer scale of turbulence, the highest scintillation frequencies are too low to neglect the cross term.

  4. THz Absorption Spectra of Fe Water Complexes Interacting with O3 Calculated by Density Functional Theory

    NASA Astrophysics Data System (ADS)

    Huang, L.; Lambrakos, S. G.; Shabaev, A.; Massa, L.; Yapijakis, C.

    2013-05-01

    The need for better monitoring of water quality and levels of water contamination implies a need for determining the dielectric response properties of water contaminants with respect to electromagnetic wave excitation. In addition to monitoring contaminants, there is an associated need for monitoring chemical processes that are for deactivation or assistance in the removal of water contaminants. Iron and manganese are two naturally occurring water contaminants, where iron is in general at much higher concentrations. Correspondingly, a process that is highly effective for assisting filtration of water contaminants, including iron and manganese, is the addition in solution of Ozone, i.e., the preozonation process. The present study uses density functional theory (DFT) for the calculation of ground-state resonance structure associated with Fe water complexes interacting with Ozone in solution. The calculations presented are for excitation by electromagnetic waves at frequencies within the THz range. Dielectric response functions can provide for different types of analyses concerning water contaminants. In particular, dielectric response functions can provide quantitative initial estimates of spectral response features for subsequent adjustment with respect to additional information such as laboratory measurements and other types of theory-based calculations. In addition, with respect to qualitative analysis, DFT-calculated absorption spectra provide for molecular level interpretation of response structure. The DFT software GAUSSIAN was used for the calculations of ground-state resonance structure presented in this article.

  5. Absorption spectra and sunlight conversion efficiency in fullerene bonded supramolecules on nanostructured ZnO

    NASA Astrophysics Data System (ADS)

    Zakhidov, Erkin; Kokhkharov, Abdumutallib; Kuvondikov, Vakhobjon; Nematov, Sherzod; Nusretov, Rafael

    2015-10-01

    The efficiency of solar radiation conversion in a model system of artificial photosynthesis, the porphyrin-fullerene assembly, is analyzed. A study of the optical absorption spectra of the porphyrin and the fullerene molecules, as well as their assembly in organic solutions, made it possible to estimate the energy efficiency of the conversion. Numerical values of the energy efficiency, defined as the fraction of the light quantum energy converted to the chemical potential of separated charges, are calculated for low- and high-concentration solutions of such a supramolecular system. The possibility of the efficient utilization of long-wavelength solar radiation in the high-concentration porphyrin-fullerene assembly solution in toluene and benzene is shown. In the photovoltaic system consisting of such a supramolecular active element, a thin ZnO film with a nanostructured surface may be introduced as a secondary acceptor of electrons from fullerene molecules. An enhancement of the transformation of separated charges of the porphyrin-fullerene assembly into electrical current by means of the ZnO film deposited on the surface of the anode electrode in such a heterogenic photovoltaic unit is proposed.

  6. Nuclear obscuration in LINERs. Clues from Spitzer/IRS spectra on the Compton thickness and the existence of the dusty torus

    NASA Astrophysics Data System (ADS)

    González-Martín, O.; Masegosa, J.; Márquez, I.; Rodríguez-Espinosa, J. M.; Acosta-Pulido, J. A.; Ramos Almeida, C.; Dultzin, D.; Hernández-García, L.; Ruschel-Dutra, D.; Alonso-Herrero, A.

    2015-06-01

    Context. Most of the optically classified low-ionisation, narrow emission-line regions (LINERs) nuclei host an active galactic nucleus (AGN). However, how they fit into the unified model (UM) of AGN is still an open question. Aims: The aims of this work are to study at mid-infrared (mid-IR) (1) the Compton-thick nature of LINERs (i.e. hydrogen column densities of NH> 1.5 × 1024 cm-2) and (2) the disappearance of the dusty torus in LINERs predicted from theoretical arguments. Methods: We have compiled all the available low spectral-resolution, mid-IR spectra of LINERs from the InfraRed Spectrograph (IRS) onboard Spitzer. The sample contains 40 LINERs. We have complemented the LINER sample with Spitzer/IRS spectra of PG QSOs, Type-1 Seyferts (S1s), Type-2 Seyferts (S2s), and StarBurst (SB) nuclei. We studied the AGN compared to the starburst content in our sample using different indicators: the equivalent width of the polycyclic aromatic hydrocarbon at 6.2 μm, the strength of the silicate feature at 9.7 μm, and the steepness of the mid-IR spectra. We classified the spectra as SB-dominated and AGN-dominated, according to these diagnostics and compared the average mid-IR spectra of the various classes. Moreover, we studied the correlation between the 12 μm luminosity, νLν(12 μm), and the 2-10 keV energy band X-ray luminosity, LX(2-10 keV). Results: In 25 out of the 40 LINERs (i.e. 62.5%), the mid-IR spectra are not SB-dominated, similar to the comparison S2 sample (67.7%). The average spectra of both SB-dominated LINERs and S2s are very similar to the average spectrum of the SB class. The average spectrum of AGN-dominated LINERs is different from the average spectra of the other optical classes, showing a rather flat spectrum at 6-28 μm. We find that the average spectrum of AGN-dominated LINERs with X-ray luminosities LX(2-10 keV) > 1041 erg/s is similar to the average mid-IR spectrum of AGN-dominated S2s. However, faint LINERs (i.e. LX(2-10 keV) < 1041 erg

  7. Vibrationally Resolved Absorption and Fluorescence Spectra of Firefly Luciferin: A Theoretical Simulation in the Gas Phase and in Solution.

    PubMed

    Cheng, Yuan-Yuan; Liu, Ya-Jun

    2016-07-01

    Firefly bioluminescence has been applied in several fields. However, the absorption and fluorescence spectra of the substrate, luciferin, have not been observed at the vibrational level. In this study, the vibrationally resolved absorption and fluorescence spectra of firefly luciferin (neutral form LH2 , phenolate ion form LH(-) and dianion form L(2-) ) are simulated using the density functional method and convoluted by a Gaussian function, with displacement, distortion and Duschinsky effects in the framework of the Franck-Condon approximation. Both neutral and anionic forms of the luciferin are considered in the gas phase and in solution. The simulated spectra have desired band maxima with the experimental ones. The vibronic structure analysis reveals that the features of the most contributive vibrational modes coincide with the key geometry-changing region during transition between the ground state and the first singlet excited state. PMID:27165852

  8. Identifying student and teacher difficulties in interpreting atomic spectra using a quantum model of emission and absorption of radiation

    NASA Astrophysics Data System (ADS)

    Savall-Alemany, Francisco; Domènech-Blanco, Josep Lluís; Guisasola, Jenaro; Martínez-Torregrosa, Joaquín

    2016-06-01

    Our study sets out to identify the difficulties that high school students, teachers, and university students encounter when trying to explain atomic spectra. To do so, we identify the key concepts that any quantum model for the emission and absorption of electromagnetic radiation must include to account for the gas spectra and we then design two questionnaires, one for teachers and the other for students. By analyzing the responses, we conclude that (i) teachers lack a quantum model for the emission and absorption of electromagnetic radiation capable of explaining the spectra, (ii) teachers and students share the same difficulties, and (iii) these difficulties concern the model of the atom, the model of radiation, and the model of the interaction between them.

  9. Design of mini-multi-gas monitoring system based on IR absorption

    NASA Astrophysics Data System (ADS)

    Tan, Qiu-lin; Zhang, Wen-dong; Xue, Chen-yang; Xiong, Ji-jun; Ma, You-chun; Wen, Fen

    2008-07-01

    In this paper, a novel non-dispersive infrared ray (IR) gas detection system is described. Conventional devices typically include several primary components: a broadband source (usually an incandescent filament), a rotating chopper shutter, a narrow-band filter, a sample tube and a detector. But we mainly use the mini-multi-channel detector, electrical modulation means and mini-gas-cell structure. To solve the problems of gas accidents in coal mines, and for family safety that results from using gas, this new IR detection system with integration, miniaturization and non-moving parts has been developed. It is based on the principle that certain gases absorb infrared radiation at specific (and often unique) wavelengths. The infrared detection optics principle used in developing this system is mainly analyzed. The idea of multi-gas detection is introduced and guided through the analysis of the single-gas detection. Through researching the design of cell structure, a cell with integration and miniaturization has been devised. By taking a single-chip microcomputer (SCM) as intelligence handling, the functional block diagram of a gas detection system is designed with the analyzing and devising of its hardware and software system. The way of data transmission on a controller area network (CAN) bus and wireless data transmission mode is explained. This system has reached the technology requirement of lower power consumption, mini-volume, wide measure range, and is able to realize multi-gas detection.

  10. Ultrafast absorption difference spectra of the Fenna-Matthews-Olson protein at 19 K: experiment and simulations.

    PubMed Central

    Buck, D R; Savikhin, S; Struve, W S

    1997-01-01

    We describe simulations of absorption difference spectra in strongly coupled photosynthetic antennas. In the presence of large resonance couplings, distinctive features arise from excited-state absorption transitions between one- and two-exciton levels. We first outline the theory for the heterodimer and for the general N-pigment system, and we demonstrate the transition between the strong and weak coupling regimes. The theory is applied to Fenna-Matthews-Olson (FMO) bacteriochlorophyll a protein trimers from the green photosynthetic bacterium Prosthecochloris aestuarii and then compared with experimental low-temperature absorption difference spectra of FMO trimers from the green bacterium Chlorobium tepidum. Images FIGURE 1 FIGURE 7 FIGURE 8 FIGURE 12 PMID:8994590

  11. Two-dimensional correlation spectroscopy and principal component analysis studies of temperature-dependent IR spectra of cotton-cellulose.

    PubMed

    Kokot, Serge; Czarnik-Matusewicz, Boguslawa; Ozaki, Yukihiro

    2002-01-01

    of which was controlled by the cooperativity effect. The temperature dependence of the asynchronous spectra indicated that the less stable O-3-H-3...O-5 bonds gave rise to an absorption extending from 3300 to 3384 cm(-1), while the more stable O-2-H-2...O-6 bonds were characterized by the absorption between 3400 and 3470 cm(-1). The final breaking of the inter- and intrachain H-bonds, which occurs at the higher temperatures, was monitored by the asynchronous peaks at 3533 and 3590 cm(-1), respectively. On the basis of both the exploratory PCA and 2-D correlation spectroscopy investigations, it was possible to extract well-defined wavenumber ranges assigned to different kinds of intra- and interchain hydrogen bonds, as well as to the free OH groups of the cotton-cellulose.

  12. Mid-IR spectra of pre-main sequence Herbig stars: An explanation for the non-detections of water lines

    NASA Astrophysics Data System (ADS)

    Antonellini, S.; Kamp, I.; Lahuis, F.; Woitke, P.; Thi, W.-F.; Meijerink, R.; Aresu, G.; Spaans, M.; Güdel, M.; Liebhart, A.

    2016-01-01

    Context. The mid-IR detection rate of water lines in disks around Herbig stars disks is about 5%, while it is around 50% for disks around T Tauri stars. The reason for this is still unclear. Aims: In this study, we want to find an explanation for the different detection rates between low mass and high mass pre-main-sequence stars in the mid-IR regime. Methods: We ran disk models with stellar parameters adjusted to spectral types B9 through M2, using the radiation thermo-chemical disk modelling code ProDiMo. We explored also a small parameter space around a standard disk model, considering dust-to-gas mass ratio, disk gas mass, mixing coefficient for dust settling, flaring index, dust maximum size, and size power law distribution index. We produced convolved spectra at the resolution of Spitzer, IRS, JWST MIRI, and VLT VISIR spectrographs. We applied random noise derived from typical Spitzer spectra for a direct comparison with observations. Results: The strength of the mid-IR water lines correlates directly with the luminosity of the central star. The models show that it is possible to suppress the water emission; however, current observations are not sensitive enough to detect mid-IR lines in disks for most of the explored parameters. The presence of noise in the spectra, combined with the high continuum flux (noise level is proportional to the continuum flux), is the most likely explanation for the non-detections towards Herbig stars. Conclusions: Mid-IR spectra with resolution higher than 20 000 are needed to investigate water in protoplanetary disks. Intrinsic differences in disk structure, such as inner gaps, gas-to-dust ratio, dust size and distribution, and inner disk scale height, between Herbig and T Tauri star disks are able to explain a lower water detection rate in disks around Herbig stars.

  13. Cryogenic Far-IR Laser Absorptivity Measurements of the Herschel Space Observatory Telescope Mirror Coatings

    NASA Astrophysics Data System (ADS)

    Fischer, J.; Klaassen, T. O.; Hovenier, J. N.; Jakob, G.; Poglitsch, A.; Sternberg, O.

    2004-05-01

    Far-infrared laser calorimetry was used to measure the absorptivity, and thus the emissivity, of aluminum-coated silicon carbide mirror samples produced during the coating qualification run of the Herschel Space Observatory telescope to be launched by the European Space Agency in 2007. The samples were measured at 77 Kelvin to simulate the operating temperature of the telescope in its planned orbit around the second Lagrangian point, L2, of the Earth-Sun system. Together, the telescope equilibrium temperature in space and the emissivity of the mirror surfaces will determine the far-infrared/submillimeter background and thus the sensitivity of two of the three astronomical instruments aboard the Observatory, if stray light levels can be kept low relative to the mirror emission. Absorptivities of both clean and dust-contaminated samples were measured at 70, 118, 184 and 496 μ m. Theoretical fits to the data predict absorptivities in the range 0.2 -- 0.4% for the clean sample and 0.2 -- 0.8% for the dusty sample, over the spectral range of the Herschel Space Observatory instruments. This work was funded by the ESA Herschel/Planck Project Office, the Office of Naval Research, and the NASA Herschel/Planck Project Office at JPL.

  14. FT-IR and FT-Raman spectra of 5-fluoroorotic acid with solid state simulation by DFT methods

    NASA Astrophysics Data System (ADS)

    Cuellar, A.; Alcolea Palafox, M.; Rastogi, V. K.; Kiefer, W.; Schlücker, S.; Rathor, S. K.

    2014-11-01

    FT-Raman and FT-IR studies of the biomolecule 5-fluoroorotic acid in the solid state were carried out. The unit cell found in the crystal was simulated as a tetramer form by density functional calculations. They were performed to clarify wavenumber assignments of the experimental observed bands in the spectra. Correlations with the molecule of uracil were made, and specific scale equations were employed to scale the wavenumbers of 5-fluoroorotic acid. Good reproduction of the experimental wavenumbers is obtained and the % error is very small in the majority of the bands. This fact confirms our simplified solid state model. The molecular structure was fully optimized using DFT and MP2 methods. The relative stability of both the syn and anti conformations was investigated, and the anti-form was found to be slightly more stable, by 7.49 kJ/mol at the MP2 level. The structures of all possible tautomeric forms were determined. The keto-form appeared as the most stable one. The NBO atomic charges and several thermodynamic parameters were also calculated.

  15. High-Resolution FT-IR Spectra of CHF 2Cl in the Region between 335 and 450 cm -1

    NASA Astrophysics Data System (ADS)

    Merke, I.; Graner, G.; Klee, S.; Mellau, G.; Polanz, O.

    1995-10-01

    The spectrum of chlorodifluoromethane (CFC-22) has been investigated in the infrared region. Spectra of CHF 2Cl were recorded at room temperature with high resolution (0.0017 cm -1, Bruker IFS 120 HR) in the region between 335 and 450 cm -1. The spectral analysis of CHF 235Cl (isotopically pure sample) allowed us to assign more than 5500 lines ( J ≤ 76) to the ν 9b-type band (ν 0 = 366.1972 cm -1) and more than 6100 lines ( J ≤ 74) to the ν 6a/ c-hybrid band (ν 0 = 412.9286 cm -1). These two bands interact through both c-type and a-type Coriolis couplings. The addition of microwave and millimeter-wave data (see accompanying paper by Z. Kisiel, L. Pszczółkowski, G. Cazzoli, and G. Cotti, J. Mol. Spectrosc.173, 477-487, 1995) to these IR transitions allowed a global fit to be performed. The resulting molecular parameters are much better defined than when each type of transition is fitted separately. It was also found, by simulating the spectrum, that the dipole moment ratio between the a and c components of ν 6 is about 1.5 and the corresponding ratio of ν 9 and ν 6a is about 2. Moreover, results will be given concerning CHF 237Cl, obtained from a natural abundance sample as well as approximate bandcenters for several hot bands, which were not analyzed in detail.

  16. FT-IR and Raman spectra and vibrational investigation of bis (4-acetylanilinium) hexachlorostannate using DFT (B3LYP) calculation

    NASA Astrophysics Data System (ADS)

    Tarchouna, S.; Chaabane, I.; Rahaiem, A. Ben

    2016-09-01

    4-acetylanilinium was used as a ligand for the synthesis of the organic/inorganic compound bis (4-acetylanilinium) hexachlorostannate. Vibrational study in the solid state was performed by FT-Raman of the free 4-acetylanilinium ligand C8H9ON+ and by FT-IR and FT-Raman spectroscopies of the [C8H10NO]2 SnCl6 compound. The comparative analysis of the Raman spectra of the title compound with that of the free ligand was discussed. The structure of the [C8H10NO]2SnCl6 was optimized by density functional theory (DFT) using B3LYP method and shows that the calculated values obtained by B3LYP/LanL2DZ basis are in a better agreement with the experimental data reported by Song et al. (2011) [1] than those obtained by B3LYP/LanL2MB basis. The vibrational frequencies are calculated using density functional theory (DFT) with the B3LYP/LanL2DZ basis, and scaled by various factors. Root mean square (RMS) value was calculated and the small difference between experimental and calculated modes has been interpreted by intermolecular interactions in the crystal.

  17. Hydrogen-Bonding Network and OH Stretch Vibration of Cellulose: Comparison of Computational Modeling with Polarized IR and SFG Spectra.

    PubMed

    Lee, Christopher M; Kubicki, James D; Fan, Bingxin; Zhong, Linghao; Jarvis, Michael C; Kim, Seong H

    2015-12-10

    Hydrogen bonds play critical roles in noncovalent directional interactions determining the crystal structure of cellulose. Although diffraction studies accurately determined the coordinates of carbon and oxygen atoms in crystalline cellulose, the structural information on hydrogen atoms involved in hydrogen-bonding is still elusive. This could be complemented by vibrational spectroscopy; but the assignment of the OH stretch peaks has been controversial. In this study, we performed calculations using density functional theory with dispersion corrections (DFT-D2) for the cellulose Iβ crystal lattices with the experimentally determined carbon and oxygen coordinates. DFT-D2 calculations revealed that the OH stretch vibrations of cellulose are highly coupled and delocalized through intra- and interchain hydrogen bonds involving all OH groups in the crystal. Additionally, molecular dynamics (MD) simulations of a single cellulose microfibril showed that the conformations of OH groups exposed at the microfibril surface are not well-defined. Comparison of the computation results with the experimentally determined IR dichroism of uniaxially aligned cellulose microfibrils and the peak positions of various cellulose crystals allowed unambiguous identification of OH stretch modes observed in the vibrational spectra of cellulose.

  18. The use of UV, FT-IR and Raman spectra for the identification of the newest penem analogs: Solutions based on mathematic procedure and the density functional theory

    NASA Astrophysics Data System (ADS)

    Cielecka-Piontek, J.; Lewandowska, K.; Barszcz, B.; Paczkowska, M.

    2013-02-01

    The application of ultraviolet, FT-IR and Raman spectra was proposed for identification studies of the newest penem analogs (doripenem, biapenem and faropenem). An identification of the newest penem analogs based on their separation from related substances was achieved after the application of first derivative of direct spectra in ultraviolet which permitted elimination of overlapping effects. A combination of experimental and theoretical studies was performed for analyzing the structure and vibrational spectra (FT-IR and Raman spectra) of doripenem, biapenem and faropenem. The calculations were conducted using the density functional theory with the B3LYP hybrid functional and 6-31G(d,p) basis set. The confirmation of the applicability of the DFT methodology for interpretation of vibrational IR and Raman spectra of the newest penem analogs contributed to determination of changes of vibrations in the area of the most labile bonds. By employing the theoretical approach it was possible to eliminate necessity of using reference standards which - considering the instability of penem analogs - require that correction coefficients are factored in.

  19. The use of UV, FT-IR and Raman spectra for the identification of the newest penem analogs: solutions based on mathematic procedure and the density functional theory.

    PubMed

    Cielecka-Piontek, J; Lewandowska, K; Barszcz, B; Paczkowska, M

    2013-02-15

    The application of ultraviolet, FT-IR and Raman spectra was proposed for identification studies of the newest penem analogs (doripenem, biapenem and faropenem). An identification of the newest penem analogs based on their separation from related substances was achieved after the application of first derivative of direct spectra in ultraviolet which permitted elimination of overlapping effects. A combination of experimental and theoretical studies was performed for analyzing the structure and vibrational spectra (FT-IR and Raman spectra) of doripenem, biapenem and faropenem. The calculations were conducted using the density functional theory with the B3LYP hybrid functional and 6-31G(d,p) basis set. The confirmation of the applicability of the DFT methodology for interpretation of vibrational IR and Raman spectra of the newest penem analogs contributed to determination of changes of vibrations in the area of the most labile bonds. By employing the theoretical approach it was possible to eliminate necessity of using reference standards which - considering the instability of penem analogs - require that correction coefficients are factored in. PMID:23218399

  20. Infrared spectroscopy of radio-luminous OH/IR stars

    NASA Technical Reports Server (NTRS)

    Jones, Terry Jay; Hyland, A. R.; Fix, John D.; Cobb, Michael L.

    1988-01-01

    Low-resolution 1.5-2.5-micron spectra for 21 radio-luminous OH/IR stars are presented. These spectra divide into two broad classes. Those with very strong water-vapor absorption closely resemble the spectra of classical Mira variables and are classified Type VM. Those with weaker water-vapor absorption, but still showing strong CO absorption, resemble the spectra of true core-burning supergiants and are classified Type SG. Comparison of the classification of 30 radio-luminous OH/IR stars with their Delta(V)s and luminosities suggests this classification is a good indicator of the intrinsic nature of the underlying star. There is some evidence, however, that some true supergiants (massive main-sequence progenitors) develop the pulsation properties and photospheric characteristics of the Mira-like OH/IR stars when they become optically obscured OH/IR stars.

  1. Formation of Random, RIE-Textured Silicon Surfaces with Reduced Reflection and Enhanced Near IR Absorption

    SciTech Connect

    ZAIDI, SALEEM H

    2001-04-01

    The authors have developed novel metal-assisted texturing processes that have led to optically favorable surfaces for solar cells. Large area ({approximately} 200 cm{sup 2}) uniform texturing has been achieved. The physical dimensions of the chamber limited texturing of even larger wafers. Surface contamination and residual RIE-induced damage were removed by incorporation of a complete RCA clean process followed by wet-chemical etching treatments. RIE-textured solar cells with optimized profiles providing performance comparable to the random, wet-chemically etched cells have been demonstrated. A majority of the texture profiles exhibit an enhanced IQE response in the near IR region.using scanning electron microscope measurements, they carried out a detailed analysis of the microstructure of random RIE-textured surfaces. The random microstructure represents a superposition of sub-{micro}m grating structures with a wide distribution of periods, depths, and profiles as determined by the SEM measurements. These structures were modeled using GSOLVER{trademark} software for periodic patterns. The enhanced IR response from random, RIE-textured surfaces is attributed to enhanced coupling of light into the transmitted diffraction orders. These obliquely propagating diffraction orders generate electron-hole pairs closer to the surface, thus, reducing bulk recombination losses relative to a non-scattering, planar surface with identical hemispherical reflection. The optimized texture and damage removal processes have been applied to large area (100--132 cm{sup 2}) multi-crystalline wafers. initial results have demonstrated improved performance relative to planar, control wafers. However, the texture and solar cell fabrication processes require further optimization in the RCA clean, DRE treatments, and emitter formation in order to fully realize the benefits of the low-reflection ({approximately}1-2%) textured surfaces.

  2. Hot Carrier Dynamics in the X Valley in Si and Ge Measured by Pump-IR-Probe Absorption Spectroscopy

    NASA Technical Reports Server (NTRS)

    Wang, W. B.; Cavicchia, M. A.; Alfano, R. R.

    1996-01-01

    Si is the semiconductor of choice for nanoelectronic roadmap into the next century for computer and other nanodevices. With growing interest in Si, Ge, and Si(sub m)Ge(sub n) strained superlattices, knowledge of the carrier relaxation processes in these materials and structures has become increasingly important. The limited time resolution for earlier studies of carrier dynamics in Ge and Si, performed using Nd:glass lasers, was not sufficient to observe the fast cooling processes. In this paper, we present a direct measurement of hot carrier dynamics in the satellite X valley in Si and Ge by time-resolved infrared(IR) absorption spectroscopy, and show the potential of our technique to identify whether the X valley is the lowest conduction valley in semiconductor materials and structures.

  3. Quantitative analysis of deconvolved X-ray absorption near-edge structure spectra: a tool to push the limits of the X-ray absorption spectroscopy technique.

    PubMed

    D'Angelo, Paola; Migliorati, Valentina; Persson, Ingmar; Mancini, Giordano; Della Longa, Stefano

    2014-09-15

    A deconvolution procedure has been applied to K-edge X-ray absorption near-edge structure (XANES) spectra of lanthanoid-containing solid systems, namely, hexakis(dmpu)praseodymium(III) and -gadolinium(III) iodide. The K-edges of lanthanoids cover the energy range 38 (La)-65 (Lu) keV, and the large widths of the core-hole states lead to broadening of spectral features, reducing the content of structural information that can be extracted from the raw X-ray absorption spectra. Here, we demonstrate that deconvolution procedures allow one to remove most of the instrumental and core-hole lifetime broadening in the K-edge XANES spectra of lanthanoid compounds, highlighting structural features that are lost in the raw data. We show that quantitative analysis of the deconvolved K-edge XANES spectra can be profitably used to gain a complete local structural characterization of lanthanoid-containing systems not only for the nearest neighbor atoms but also for higher-distance coordination shells. PMID:25171598

  4. Analysis of Gain and Absorption Spectra of Gallium Nitride-based Laser Diodes

    NASA Astrophysics Data System (ADS)

    Melo, Thiago

    Laser diodes (LDs) based on the III-Nitride material system, (Al,In,Ga)N, stand to satisfy a number of application needs, and their huge market segment has been further growing with the use of LDs for full color laser projection. All commercially available GaN-based devices are based on the conventional c-plane (polar) orientation of this material. However, strong polarization fields caused by strained quantum-well (QW) layers on c-plane induce the quantum-confined Stark effect (QCSE), which leads to reduced radiative recombination rate and are aggravated when more indium is added into the QW(s) in order to achieve longer wavelengths. A promising solution for this is the use of nonpolar and semipolar crystal growth orientations. Elimination or mitigation of polarization-related fields within the QWs grown along these novel orientations is observed and one expects increased radiative recombination rate and stabilization of the wavelength emission with respect to the injection current. In order to have more insights on the advantages of using the novel crystal orientations of the III-Nitride material system, we compare the gain of LD structures fabricated from c-plane, nonpolar and semipolar GaN substrates. Using thesegmented contact method, single-pass gain spectra of LD epitaxial structures at wafer level are compared for the different crystal orientations as well as the single-pass absorption coefficient spectrum of the active region material and its dependence on reversed bias. Experimental gain spectra under continuous-wave (CW) operation of actual industry LDs fabricated from c-plane and nonpolar/semipolar GaN-based materials emitting wavelengths in the visible are then presented, using the Hakki-Paoli technique at high resolution. Measurements of the transparency current density, total losses and differential modal gain curves up to threshold are analyzed and compared between nonpolar/semipolar and c-plane LDs in violet and blue spectral regions regions. In a

  5. Comparison of x-ray absorption spectra between water and ice: new ice data with low pre-edge absorption cross-section.

    PubMed

    Sellberg, Jonas A; Kaya, Sarp; Segtnan, Vegard H; Chen, Chen; Tyliszczak, Tolek; Ogasawara, Hirohito; Nordlund, Dennis; Pettersson, Lars G M; Nilsson, Anders

    2014-07-21

    The effect of crystal growth conditions on the O K-edge x-ray absorption spectra of ice is investigated through detailed analysis of the spectral features. The amount of ice defects is found to be minimized on hydrophobic surfaces, such as BaF2(111), with low concentration of nucleation centers. This is manifested through a reduction of the absorption cross-section at 535 eV, which is associated with distorted hydrogen bonds. Furthermore, a connection is made between the observed increase in spectral intensity between 544 and 548 eV and high-symmetry points in the electronic band structure, suggesting a more extended hydrogen-bond network as compared to ices prepared differently. The spectral differences for various ice preparations are compared to the temperature dependence of spectra of liquid water upon supercooling. A double-peak feature in the absorption cross-section between 540 and 543 eV is identified as a characteristic of the crystalline phase. The connection to the interpretation of the liquid phase O K-edge x-ray absorption spectrum is extensively discussed.

  6. Comparison of x-ray absorption spectra between water and ice: New ice data with low pre-edge absorption cross-section

    SciTech Connect

    Sellberg, Jonas A.; Nilsson, Anders; Kaya, Sarp; Segtnan, Vegard H.; Chen, Chen; Tyliszczak, Tolek; Ogasawara, Hirohito; Nordlund, Dennis; Pettersson, Lars G. M.

    2014-07-21

    The effect of crystal growth conditions on the O K-edge x-ray absorption spectra of ice is investigated through detailed analysis of the spectral features. The amount of ice defects is found to be minimized on hydrophobic surfaces, such as BaF{sub 2}(111), with low concentration of nucleation centers. This is manifested through a reduction of the absorption cross-section at 535 eV, which is associated with distorted hydrogen bonds. Furthermore, a connection is made between the observed increase in spectral intensity between 544 and 548 eV and high-symmetry points in the electronic band structure, suggesting a more extended hydrogen-bond network as compared to ices prepared differently. The spectral differences for various ice preparations are compared to the temperature dependence of spectra of liquid water upon supercooling. A double-peak feature in the absorption cross-section between 540 and 543 eV is identified as a characteristic of the crystalline phase. The connection to the interpretation of the liquid phase O K-edge x-ray absorption spectrum is extensively discussed.

  7. On-the-Fly ab Initio Semiclassical Dynamics of Floppy Molecules: Absorption and Photoelectron Spectra of Ammonia.

    PubMed

    Wehrle, Marius; Oberli, Solène; Vaníček, Jiří

    2015-06-01

    We investigate the performance of on-the-fly ab initio (OTF-AI) semiclassical dynamics combined with the thawed Gaussian approximation (TGA) for computing vibrationally resolved absorption and photoelectron spectra. Ammonia is used as a prototype of floppy molecules, whose potential energy surfaces display strong anharmonicity. We show that despite complications due to the presence of large amplitude motion, the main features of the spectra are captured by the OTF-AI-TGA, which—by definition—does not require any a priori knowledge of the potential energy surface. Moreover, the computed spectra are significantly better than those based on the popular global harmonic approximation. Finally, we probe the limit of the TGA to describe higher-resolution spectra, where long time dynamics is required. PMID:25928833

  8. Collison-induced rototranslational absorption spectra of H/sub 2/-He pairs at temperatures from 40 to 3000 K

    SciTech Connect

    Borysow, J.; Frommhold, L.; Birnbaum, G.

    1988-03-01

    The zeroth, first, and second spectral moments of the rototranslational collision-induced absorption (RT CIA) spectra of hydrogen-helium mixtures are calculated from the fundamental theory, for temperatures from 40 to 3000 K. With the help of simple analytical functions of three parameters and the information given, the RT CIA spectra of H/sub 2/-He pairs can be generated on computers of small capacity, with rms deviations from exact quantum profiles of not more than a few percent. Such representations of the CIA spectra are of interest for work related to the atmospheres of the outer planets and cool stars. The theoretical spectra are in close agreement with existing laboratory measurements at various temperatures from about 77 to 3000 K. 28 references.

  9. Collison-induced rototranslational absorption spectra of H2-He pairs at temperatures from 40 to 3000 K

    NASA Technical Reports Server (NTRS)

    Borysow, Jacek; Frommhold, Lothar; Birnbaum, George

    1988-01-01

    The zeroth, first, and second spectral moments of the rototranslational collision-induced absorption (RT CIA) spectra of hydrogen-helium mixtures are calculated from the fundamental theory, for temperatures from 40 to 3000 K. With the help of simple analytical functions of three parameters and the information given, the RT CIA spectra of H2-He pairs can be generated on computers of small capacity, with rms deviations from exact quantum profiles of not more than a few percent. Such representations of the CIA spectra are of interest for work related to the atmospheres of the outer planets and cool stars. The theoretical spectra are in close agreement with existing laboratory measurements at various temperatures from about 77 to 3000 K.

  10. Time-Resolved O3 Chemical Chain Reaction Kinetics Via High-Resolution IR Laser Absorption Methods

    NASA Technical Reports Server (NTRS)

    Kulcke, Axel; Blackmon, Brad; Chapman, William B.; Kim, In Koo; Nesbitt, David J.

    1998-01-01

    Excimer laser photolysis in combination with time-resolved IR laser absorption detection of OH radicals has been used to study O3/OH(v = 0)/HO2 chain reaction kinetics at 298 K, (i.e.,(k(sub 1) is OH + 03 yields H02 + 02 and (k(sub 2) is H02 + 03 yields OH + 202). From time-resolved detection of OH radicals with high-resolution near IR laser absorption methods, the chain induction kinetics have been measured at up to an order of magnitude higher ozone concentrations ([03] less than or equal to 10(exp 17) molecules/cu cm) than accessible in previous studies. This greater dynamic range permits the full evolution of the chain induction, propagation, and termination process to be temporally isolated and measured in real time. An exact solution for time-dependent OH evolution under pseudo- first-order chain reaction conditions is presented, which correctly predicts new kinetic signatures not included in previous OH + 03 kinetic analyses. Specifically, the solutions predict an initial exponential loss (chain "induction") of the OH radical to a steady-state level ([OH](sub ss)), with this fast initial decay determined by the sum of both chain rate constants, k(sub ind) = k(sub 1) + k(sub 2). By monitoring the chain induction feature, this sum of the rate constants is determined to be k(sub ind) = 8.4(8) x 10(exp -14) cu cm/molecule/s for room temperature reagents. This is significantly higher than the values currently recommended for use in atmospheric models, but in excellent agreement with previous results from Ravishankara et al.

  11. Electronic absorption spectra of rare earth (III) species in NaCl-2CsCl eutectic based melts

    NASA Astrophysics Data System (ADS)

    Volkovich, V. A.; Ivanov, A. B.; Yakimov, S. M.; Tsarevskii, D. V.; Golovanova, O. A.; Sukhikh, V. V.; Griffiths, T. R.

    2016-09-01

    Electronic absorption spectra of ions of trivalent rare earth elements were measured in the melts based on NaCl-2CsCl eutectic in the wavelength ranges of 190-1350 and 1450-1700 nm. The measurements were performed at 550-850 °C. The EAS of Y, La, Ce and Lu containing melts have no absorption bands in the studied regions. For the remaining REEs (Pr, Nd, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, Yb) the absorption bands in the EAS were assigned to the corresponding f-f electron transitions. The Stark effect was observed for Yb(III) F5/2 excited state. Increasing temperature leads to decreasing intensity of the absorption bands, except for the bands resulting from hypersensitive transitions. Beer's law was confirmed up to 0.4 M solutions of REE.

  12. Solvent dependence of two-photon absorption spectra of the enhanced green fluorescent protein (eGFP) chromophore

    NASA Astrophysics Data System (ADS)

    Hosoi, Haruko; Tayama, Ryo; Takeuchi, Satoshi; Tahara, Tahei

    2015-06-01

    Two-photon absorption spectra of 4‧-hydroxybenzylidene-2,3-dimethylimidazolinone, a model chromophore of enhanced green fluorescent protein (eGFP), were measured in various solvents. The two-photon absorption band of its anionic form is markedly blue-shifted from the corresponding one-photon absorption band in all solvents. Moreover, the magnitude of the blue shift varies largely depending on the solvent, which does not accord with the assignment of the two-photon absorption band to the transitions to the vibrationally excited S1 state. Our finding is readily rationalized by considering overlapping contributions of the S1 ← S0 and S2 ← S0 transitions, suggesting the involvement of the S2 state also in two-photon fluorescence of eGFP.

  13. Interpretation of X-ray absorption spectra of As(III) in solution using Monte Carlo simulations.

    PubMed

    Canche-Tello, Jesus; Vargas, M Cristina; Hérnandez-Cobos, Jorge; Ortega-Blake, Iván; Leclercq, Amelie; Solari, Pierre Lorenzo; Den Auwer, Christophe; Mustre de Leon, José

    2014-11-20

    We performed X-ray absorption spectroscopy measurements on the arsenic K-edge of As(III) in solution under acidic conditions. Extended X-ray absorption fine structure (EXAFS) and X-ray near edge structure (XANES) spectra were compared with theoretical calculations which use local atomic structure configurations, either derived from density functional theory (DFT) energy minimization (EM) calculations or based on classical Monte Carlo (MC) simulations, for a As(OH)3 cluster surrounded by water molecules. The nearest arsenic-oxygen distances obtained from the fit of the XAFS spectra are consistent with the distances present in configurations derived from Monte Carlo simulations but not with those obtained from DFT-EM calculations. Calculations of XANES using either DFT-EM or the average configuration obtained from MC simulations do not reproduce the XANES spectra in the vicinity of the absorption edge. However, specific local atomic structural configurations of the As(OH)3 and water molecules, obtained from MC simulations, which show some ordering of water molecules up to 5 Å from the arsenic, reproduce qualitatively the experimental spectra. These results highlight the capability of XANES to yield information about hydration of ions in solution.

  14. Electronic Absorption Spectra of Tetrapyrrole-Based Pigments via TD-DFT: A Reduced Orbital Space Study.

    PubMed

    Shrestha, Kushal; Virgil, Kyle A; Jakubikova, Elena

    2016-07-28

    Tetrapyrrole-based pigments play a crucial role in photosynthesis as principal light absorbers in light-harvesting chemical systems. As such, accurate theoretical descriptions of the electronic absorption spectra of these pigments will aid in the proper description and understanding of the overall photophysics of photosynthesis. In this work, time-dependent density functional theory (TD-DFT) at the CAM-B3LYP/6-31G* level of theory is employed to produce the theoretical absorption spectra of several tetrapyrrole-based pigments. However, the application of TD-DFT to large systems with several hundreds of atoms can become computationally prohibitive. Therefore, in this study, TD-DFT calculations with reduced orbital spaces (ROSs) that exclude portions of occupied and virtual orbitals are pursued as a viable, computationally cost-effective alternative to conventional TD-DFT calculations. The effects of reducing orbital space size on theoretical spectra are qualitatively and quantitatively described, and both conventional and ROS results are benchmarked against experimental absorption spectra of various tetrapyrrole-based pigments. The orbital reduction approach is also applied to a large natural pigment assembly that comprises the principal light-absorbing component of the reaction center in purple bacteria. Overall, we find that TD-DFT calculations with proper and judicious orbital space reductions can adequately reproduce conventional, full orbital space, TD-DFT results of all pigments studied in this work.

  15. Study of electron transition energies between anions and cations in spinel ferrites using differential UV-vis absorption spectra

    NASA Astrophysics Data System (ADS)

    Xue, L. C.; Wu, L. Q.; Li, S. Q.; Li, Z. Z.; Tang, G. D.; Qi, W. H.; Ge, X. S.; Ding, L. L.

    2016-07-01

    It is very important to determine electron transition energies (Etr) between anions and different cations in order to understand the electrical transport and magnetic properties of a material. Many authors have analyzed UV-vis absorption spectra using the curve (αhν)2 vs E, where α is the absorption coefficient and E(=hν) is the photon energy. Such an approach can give only two band gap energies for spinel ferrites. In this paper, using differential UV-vis absorption spectra, dα/dE vs E, we have obtained electron transition energies (Etr) between the anions and cations, Fe2+ and Fe3+ at the (A) and [B] sites and Ni2+ at the [B] sites for the (A)[B]2O4 spinel ferrite samples CoxNi0.7-xFe2.3O4 (0.0≤x≤0.3), CrxNi0.7Fe2.3-xO4 (0.0≤x≤0.3) and Fe3O4. We suggest that the differential UV-vis absorption spectra should be accepted as a general analysis method for determining electron transition energies between anions and cations.

  16. Recording of absorption spectra by a three-beam integral technique with a tunable laser and external cavity

    SciTech Connect

    Korolenko, P V; Nikolaev, I V; Ochkin, V N; Tskhai, S N

    2014-04-28

    An integral method is considered for recording absorption using three laser beams transmitted through and reflected from an external cavity with the absorbing medium (R-ICOS). The method is the elaboration of a known single-beam ICOS method and allows suppression of the influence of radiation phase fluctuations in the resonator on recording weak absorption spectra. First of all, this reduces high-frequency instabilities and gives a possibility to record spectra during short time intervals. In this method, mirrors of the resonator may have moderate reflection coefficients. Capabilities of the method have been demonstrated by the examples of weak absorption spectra of atmospheric methane and natural gas in a spectral range around 1650 nm. With the mirrors having the reflection coefficients of 0.8–0.99, a spectrum can be recorded for 320 μs with the accuracy sufficient for detecting a background concentration of methane in atmosphere. For the acquisition time of 20 s, the absorption coefficients of ∼2×10{sup -8} cm{sup -1} can be measured, which corresponds to a 40 times less molecule concentration than the background value. (laser spectroscopy)

  17. Interpretation of unexpected behavior of infrared absorption spectra of ScF3 beyond the quasiharmonic approximation

    NASA Astrophysics Data System (ADS)

    Piskunov, Sergei; Žguns, Pjotrs A.; Bocharov, Dmitry; Kuzmin, Alexei; Purans, Juris; Kalinko, Aleksandr; Evarestov, Robert A.; Ali, Shehab E.; Rocca, Francesco

    2016-06-01

    Scandium fluoride (ScF3), having cubic ReO3-type structure, has attracted much scientific attention due to its rather strong negative thermal expansion (NTE) in the broad temperature range from 10 to 1100 K. Here we use the results of diffraction and extended x-ray absorption fine-structure (EXAFS) spectroscopy to interpret the influence of NTE on the temperature dependence of infrared absorption spectra of ScF3. Original infrared absorption and EXAFS experiments in a large temperature range are presented and interpreted using ab initio lattice dynamics simulations within and beyond quasiharmonic approximations. We demonstrate that ab initio electronic structure calculations, based on the linear combination of atomic orbitals method with hybrid functionals, are able to reproduce well the experimental values of lattice parameter a0, band gap Eg, and lattice dynamics in ScF3. However, the simulations performed within quasiharmonic approximation fail to reproduce the temperature dependence of two infrared active bands due to the F-Sc-F bending (at 220 cm-1) and Sc-F stretching (at 520 cm-1) modes present in the infrared absorption spectra. To overcome this problem, an approach beyond the quasiharmonic approximation is proposed: It accounts for the negative thermal expansion of the lattice and for fluorine atom displacements due to strong F vibrational motion perpendicular to the cubic axes and allows us to explain qualitatively the temperature behavior of infrared spectra of ScF3.

  18. Variability, absorption features, and parent body searches in "spectrally featureless" meteorite reflectance spectra: Case study - Tagish Lake

    NASA Astrophysics Data System (ADS)

    Izawa, M. R. M.; Craig, M. A.; Applin, D. M.; Sanchez, J. A.; Reddy, V.; Le Corre, L.; Mann, P.; Cloutis, E. A.

    2015-07-01

    Reflectance spectra of many asteroids and other Solar System bodies are commonly reported as "featureless". Here, we show that weak but consistently detectable absorption bands are observable in 200-2500 nm spectra of the Tagish Lake meteorite, a likely compositional and spectral analogue for low-albedo, "spectrally-featureless" asteroids. Tagish Lake presents a rare opportunity to study multiple lithologies within a single meteorite. Reflectance spectra of Tagish Lake display significant variation between different lithologies. The spectral variations are due in part to mineralogical variations between different Tagish Lake lithologies. Ultraviolet reflectance spectra (200-400 nm), few of which have been reported in the literature to date, reveal albedo and spectral ratio variations as a function of mineralogy. Similarly visible-near infrared reflectance spectra reveal variations in albedo, spectral slope, and the presence of weak absorption features that persist across different lithologies and can be attributed to various phases present in Tagish Lake. These observations demonstrate that significant spectral variability may exist between different lithologies of Tagish Lake, which may affect the interpretation of potential source body spectra. It is also important to consider the spectral variability within the meteorite before excluding compositional links between possible parent bodies in the main belt and Tagish Lake. Tagish Lake materials may also be spectral-compositional analogues for materials on the surfaces of other dark asteroids, including some that are targets of upcoming spacecraft missions. Tagish Lake has been proposed as a spectral match for 'ultra-primitive' D or P-type asteroids, and the variability reported here may be reflected in spatially or rotationally-resolved spectra of possible Tagish Lake parent bodies and source objects in the Near-Earth Asteroid population. A search for objects with spectra similar to Tagish Lake has been carried

  19. Compact characterization of liquid absorption and emission spectra using linear variable filters integrated with a CMOS imaging camera

    PubMed Central

    Wan, Yuhang; Carlson, John A.; Kesler, Benjamin A.; Peng, Wang; Su, Patrick; Al-Mulla, Saoud A.; Lim, Sung Jun; Smith, Andrew M.; Dallesasse, John M.; Cunningham, Brian T.

    2016-01-01

    A compact analysis platform for detecting liquid absorption and emission spectra using a set of optical linear variable filters atop a CMOS image sensor is presented. The working spectral range of the analysis platform can be extended without a reduction in spectral resolution by utilizing multiple linear variable filters with different wavelength ranges on the same CMOS sensor. With optical setup reconfiguration, its capability to measure both absorption and fluorescence emission is demonstrated. Quantitative detection of fluorescence emission down to 0.28 nM for quantum dot dispersions and 32 ng/mL for near-infrared dyes has been demonstrated on a single platform over a wide spectral range, as well as an absorption-based water quality test, showing the versatility of the system across liquid solutions for different emission and absorption bands. Comparison with a commercially available portable spectrometer and an optical spectrum analyzer shows our system has an improved signal-to-noise ratio and acceptable spectral resolution for discrimination of emission spectra, and characterization of colored liquid’s absorption characteristics generated by common biomolecular assays. This simple, compact, and versatile analysis platform demonstrates a path towards an integrated optical device that can be utilized for a wide variety of applications in point-of-use testing and point-of-care diagnostics. PMID:27389070

  20. Compact characterization of liquid absorption and emission spectra using linear variable filters integrated with a CMOS imaging camera.

    PubMed

    Wan, Yuhang; Carlson, John A; Kesler, Benjamin A; Peng, Wang; Su, Patrick; Al-Mulla, Saoud A; Lim, Sung Jun; Smith, Andrew M; Dallesasse, John M; Cunningham, Brian T

    2016-01-01

    A compact analysis platform for detecting liquid absorption and emission spectra using a set of optical linear variable filters atop a CMOS image sensor is presented. The working spectral range of the analysis platform can be extended without a reduction in spectral resolution by utilizing multiple linear variable filters with different wavelength ranges on the same CMOS sensor. With optical setup reconfiguration, its capability to measure both absorption and fluorescence emission is demonstrated. Quantitative detection of fluorescence emission down to 0.28 nM for quantum dot dispersions and 32 ng/mL for near-infrared dyes has been demonstrated on a single platform over a wide spectral range, as well as an absorption-based water quality test, showing the versatility of the system across liquid solutions for different emission and absorption bands. Comparison with a commercially available portable spectrometer and an optical spectrum analyzer shows our system has an improved signal-to-noise ratio and acceptable spectral resolution for discrimination of emission spectra, and characterization of colored liquid's absorption characteristics generated by common biomolecular assays. This simple, compact, and versatile analysis platform demonstrates a path towards an integrated optical device that can be utilized for a wide variety of applications in point-of-use testing and point-of-care diagnostics. PMID:27389070

  1. Compact characterization of liquid absorption and emission spectra using linear variable filters integrated with a CMOS imaging camera

    NASA Astrophysics Data System (ADS)

    Wan, Yuhang; Carlson, John A.; Kesler, Benjamin A.; Peng, Wang; Su, Patrick; Al-Mulla, Saoud A.; Lim, Sung Jun; Smith, Andrew M.; Dallesasse, John M.; Cunningham, Brian T.

    2016-07-01

    A compact analysis platform for detecting liquid absorption and emission spectra using a set of optical linear variable filters atop a CMOS image sensor is presented. The working spectral range of the analysis platform can be extended without a reduction in spectral resolution by utilizing multiple linear variable filters with different wavelength ranges on the same CMOS sensor. With optical setup reconfiguration, its capability to measure both absorption and fluorescence emission is demonstrated. Quantitative detection of fluorescence emission down to 0.28 nM for quantum dot dispersions and 32 ng/mL for near-infrared dyes has been demonstrated on a single platform over a wide spectral range, as well as an absorption-based water quality test, showing the versatility of the system across liquid solutions for different emission and absorption bands. Comparison with a commercially available portable spectrometer and an optical spectrum analyzer shows our system has an improved signal-to-noise ratio and acceptable spectral resolution for discrimination of emission spectra, and characterization of colored liquid’s absorption characteristics generated by common biomolecular assays. This simple, compact, and versatile analysis platform demonstrates a path towards an integrated optical device that can be utilized for a wide variety of applications in point-of-use testing and point-of-care diagnostics.

  2. Activation and deactivation of a robust immobilized Cp*Ir-transfer hydrogenation catalyst: a multielement in situ X-ray absorption spectroscopy study.

    PubMed

    Sherborne, Grant J; Chapman, Michael R; Blacker, A John; Bourne, Richard A; Chamberlain, Thomas W; Crossley, Benjamin D; Lucas, Stephanie J; McGowan, Patrick C; Newton, Mark A; Screen, Thomas E O; Thompson, Paul; Willans, Charlotte E; Nguyen, Bao N

    2015-04-01

    A highly robust immobilized [Cp*IrCl2]2 precatalyst on Wang resin for transfer hydrogenation, which can be recycled up to 30 times, was studied using a novel combination of X-ray absorption spectroscopy (XAS) at Ir L3-edge, Cl K-edge, and K K-edge. These culminate in in situ XAS experiments that link structural changes of the Ir complex with its catalytic activity and its deactivation. Mercury poisoning and "hot filtration" experiments ruled out leached Ir as the active catalyst. Spectroscopic evidence indicates the exchange of one chloride ligand with an alkoxide to generate the active precatalyst. The exchange of the second chloride ligand, however, leads to a potassium alkoxide-iridate species as the deactivated form of this immobilized catalyst. These findings could be widely applicable to the many homogeneous transfer hydrogenation catalysts with Cp*IrCl substructure.

  3. Inspecting absorption in the spectra of extra-galactic gamma-ray sources for insight into Lorentz invariance violation

    SciTech Connect

    Jacob, Uri; Piran, Tsvi

    2008-12-15

    We examine what the absorbed spectra of extra-galactic TeV gamma-ray sources, such as blazars, would look like in the presence of Lorentz invariance violation. Pair production with the extra-galactic background light modifies the observed spectra of such sources, and we show that a violation of Lorentz invariance would generically have a dramatic effect on this absorption feature. Inspecting this effect, an experimental task likely practical in the near future, can provide unique insight on the possibility of Lorentz invariance violation.

  4. Near-infrared absorption spectra of C{sub 60} radical cations and anions prepared simultaneously in solid argon

    SciTech Connect

    Gasyna, Z.; Andrews, L.; Schatz, P.N.

    1992-02-20

    The codeposition of C{sub 60} vapor with excess argon and argon resonance radiation has produced strong new absorptions at 973 and 1068 nm in solid argon at 11 {+-} 1 K. A similar experiment with CCl{sub 4} added to serve as an electron trap reduced the yield of the 1068-nm band with little effect on the 973-nm absorption. The 973-nm band is assigned to C{sub 60}{sup {sm_bullet}+} produced by photoionization and the 1068-nm band to C{sub 60}{sup {sm_bullet}-} formed by electron capture. These identifications are in excellent agreement with glassy matrix, solution, and photoelectron spectra.

  5. Double photoexcitation involving 2p and 4f electrons in L3 -edge x-ray absorption spectra of protactinium

    NASA Astrophysics Data System (ADS)

    Hennig, Christoph; Le Naour, Claire; Auwer, Christophe Den

    2008-06-01

    The L3 -edge x-ray absorption spectrum of Pa(V) fluoride in aqueous solution show clear evidence for the double photoexcitation involving 2p and 4f electrons. A comparison with the [2p4f] double-electron excitations observed in the L3 -edge x-ray absorption spectra of other actinides (thorium, uranium, neptunium, plutonium, and americium) indicates a monotonic increase in the excitation energy. The sharp edgelike structure of the multielectron excitation reveals the origin of a shake-up channel.

  6. A Study of the Ultraviolet Absorptions in the Spectra of DA White Dwarfs and Ultraviolet Spectra of the Star HR6560

    NASA Technical Reports Server (NTRS)

    Wegner, Gary A.

    1986-01-01

    Two projects in conjunction with the International Ultraviolet Explorer Satellite are discussed. These projects were to: (1) study the properties of the H2 and H2+ quasi-molecular absorption features at lambda lambda 1600 and 1400 in the ultraviolet spectra of the hydrogen-rich DA white dwarfs and to search for additional spectroscopic features in the spectra of these stars; and (2) use the ultraviolet portion of the spectrum of the peculiar rare earth-rich late F type star, HR6560 (HD159870), to establish whether or not the element abundance anomalies are produced in conjunction with its having a white dwarf binary companion. The data show that HR6560 is probably not associated with any hot subluminous or degenerate star.

  7. A model predicting the evolution of ice particle size spectra and radiative properties of cirrus clouds. Part 2: Dependence of absorption and extinction on ice crystal morphology

    NASA Technical Reports Server (NTRS)

    Mitchell, David L.; Arnott, W. Patrick

    1994-01-01

    This study builds upon the microphysical modeling described in Part 1 by deriving formulations for the extinction and absorption coefficients in terms of the size distribution parameters predicted from the micro-physical model. The optical depth and single scatter albedo of a cirrus cloud can then be determined, which, along with the asymmetry parameter, are the input parameters needed by cloud radiation models. Through the use of anomalous diffraction theory, analytical expressions were developed describing the absorption and extinction coefficients and the single scatter albedo as functions of size distribution parameters, ice crystal shapes (or habits), wavelength, and refractive index. The extinction coefficient was formulated in terms of the projected area of the size distribution, while the absorption coefficient was formulated in terms of both the projected area and mass of the size distribution. These properties were formulated as explicit functions of ice crystal geometry and were not based on an 'effective radius.' Based on simulations of the second cirrus case study described in Part 1, absorption coefficients predicted in the near infrared for hexagonal columns and rosettes were up to 47% and 71% lower, respectively, than absorption coefficients predicted by using equivalent area spheres. This resulted in single scatter albedos in the near-infrared that were considerably greater than those predicted by the equivalent area sphere method. Reflectances in this region should therefore be underestimated using the equivalent area sphere approach. Cloud optical depth was found to depend on ice crystal habit. When the simulated cirrus cloud contained only bullet rosettes, the optical depth was 142% greater than when the cloud contained only hexagonal columns. This increase produced a doubling in cloud albedo. In the near-infrared (IR), the single scatter albedo also exhibited a significant dependence on ice crystal habit. More research is needed on the

  8. Vibrational (FT-IR and FT-Raman), electronic (UV-Vis), NMR (1H and 13C) spectra and reactivity analyses of 4,5-dimethyl-o-phenylenediamine.

    PubMed

    Atac, Ahmet; Karaca, Caglar; Gunnaz, Salih; Karabacak, Mehmet

    2014-09-15

    The structure of 4,5-dimethyl-o-phenylenediamine (C8H12N2, DMPDA) was investigated on the basis of spectroscopic data and theoretical calculations. The sterochemical structure was determined by FT-IR, FT-Raman, UV, 1H and 13C NMR spectra. An experimental study and a theoretical analysis were associated by using the B3LYP method with Gaussian09 package program. FT-IR and FT-Raman spectra were recorded in the region of 4000-400 cm(-1) and 4000-10 cm(-1), respectively. The vibrational spectra were calculated by DFT method and the fundamental vibrations were assigned on the basis of the total energy distribution (TED), calculated with scaled quantum mechanics (SQM) method with Parallel Quantum Solutions (PQS) program. The UV absorption spectrum of the compound that dissolved in ethanol solution were recorded in the range of 190-400 nm. Total density of state (TDOS) and partial density of state (PDOS) of the DMPDA in terms of HOMOs and LUMOs were calculated and analyzed. Chemical shifts were reported in ppm relative to tetramethylsilane (TMS) for 1H and 13C NMR spectra. The compound was dissolved in dimethyl sulfoxide (DMSO). Also, 1H and 13C chemical shifts calculated using the gauge independent atomic orbital (GIAO) method. Mullikan atomic charges and other thermo-dynamical parameters were investigated with the help of B3LYP (DFT) method using 6-311++G** basis set. On the basis of the thermodynamic properties of the title compound at different temperatures have been carried out, revealing the correlations between heat capacity (C), entropy (S), enthalpy changes (H) and temperatures. The optimized bond lengths, bond angles, chemical shifts and vibrational wavenumbers showed the best agreement with the experimental results.

  9. Vibrational (FT-IR and FT-Raman), electronic (UV-Vis), NMR (1H and 13C) spectra and reactivity analyses of 4,5-dimethyl-o-phenylenediamine.

    PubMed

    Atac, Ahmet; Karaca, Caglar; Gunnaz, Salih; Karabacak, Mehmet

    2014-09-15

    The structure of 4,5-dimethyl-o-phenylenediamine (C8H12N2, DMPDA) was investigated on the basis of spectroscopic data and theoretical calculations. The sterochemical structure was determined by FT-IR, FT-Raman, UV, 1H and 13C NMR spectra. An experimental study and a theoretical analysis were associated by using the B3LYP method with Gaussian09 package program. FT-IR and FT-Raman spectra were recorded in the region of 4000-400 cm(-1) and 4000-10 cm(-1), respectively. The vibrational spectra were calculated by DFT method and the fundamental vibrations were assigned on the basis of the total energy distribution (TED), calculated with scaled quantum mechanics (SQM) method with Parallel Quantum Solutions (PQS) program. The UV absorption spectrum of the compound that dissolved in ethanol solution were recorded in the range of 190-400 nm. Total density of state (TDOS) and partial density of state (PDOS) of the DMPDA in terms of HOMOs and LUMOs were calculated and analyzed. Chemical shifts were reported in ppm relative to tetramethylsilane (TMS) for 1H and 13C NMR spectra. The compound was dissolved in dimethyl sulfoxide (DMSO). Also, 1H and 13C chemical shifts calculated using the gauge independent atomic orbital (GIAO) method. Mullikan atomic charges and other thermo-dynamical parameters were investigated with the help of B3LYP (DFT) method using 6-311++G** basis set. On the basis of the thermodynamic properties of the title compound at different temperatures have been carried out, revealing the correlations between heat capacity (C), entropy (S), enthalpy changes (H) and temperatures. The optimized bond lengths, bond angles, chemical shifts and vibrational wavenumbers showed the best agreement with the experimental results. PMID:24813280

  10. Vibrational (FT-IR and FT-Raman), electronic (UV-Vis), NMR (1H and 13C) spectra and reactivity analyses of 4,5-dimethyl-o-phenylenediamine

    NASA Astrophysics Data System (ADS)

    Atac, Ahmet; Karaca, Caglar; Gunnaz, Salih; Karabacak, Mehmet

    2014-09-01

    The structure of 4,5-dimethyl-o-phenylenediamine (C8H12N2, DMPDA) was investigated on the basis of spectroscopic data and theoretical calculations. The sterochemical structure was determined by FT-IR, FT-Raman, UV, 1H and 13C NMR spectra. An experimental study and a theoretical analysis were associated by using the B3LYP method with Gaussian09 package program. FT-IR and FT-Raman spectra were recorded in the region of 4000-400 cm-1 and 4000-10 cm-1, respectively. The vibrational spectra were calculated by DFT method and the fundamental vibrations were assigned on the basis of the total energy distribution (TED), calculated with scaled quantum mechanics (SQM) method with Parallel Quantum Solutions (PQS) program. The UV absorption spectrum of the compound that dissolved in ethanol solution were recorded in the range of 190-400 nm. Total density of state (TDOS) and partial density of state (PDOS) of the DMPDA in terms of HOMOs and LUMOs were calculated and analyzed. Chemical shifts were reported in ppm relative to tetramethylsilane (TMS) for 1H and 13C NMR spectra. The compound was dissolved in dimethyl sulfoxide (DMSO). Also, 1H and 13C chemical shifts calculated using the gauge independent atomic orbital (GIAO) method. Mullikan atomic charges and other thermo-dynamical parameters were investigated with the help of B3LYP (DFT) method using 6-311++G** basis set. On the basis of the thermodynamic properties of the title compound at different temperatures have been carried out, revealing the correlations between heat capacity (C), entropy (S), enthalpy changes (H) and temperatures. The optimized bond lengths, bond angles, chemical shifts and vibrational wavenumbers showed the best agreement with the experimental results.

  11. First-principles calculation of principal Hugoniot and K-shell X-ray absorption spectra for warm dense KCl

    SciTech Connect

    Zhao, Shijun; Zhang, Shen; Kang, Wei; Li, Zi; Zhang, Ping; He, Xian-Tu

    2015-06-15

    Principal Hugoniot and K-shell X-ray absorption spectra of warm dense KCl are calculated using the first-principles molecular dynamics (FPMD) method. Evolution of electronic structures as well as the influence of the approximate description of ionization on pressure (caused by the underestimation of the energy gap between conduction bands and valence bands) in the first-principles method are illustrated by the calculation. It is shown that approximate description of ionization in FPMD has small influence on Hugoniot pressure due to mutual compensation of electronic kinetic pressure and virial pressure. The calculation of X-ray absorption spectra shows that the band gap of KCl persists after the pressure ionization of the 3p electrons of Cl and K taking place at lower energy, which provides a detailed understanding to the evolution of electronic structures of warm dense matter.

  12. Near infrared absorption spectra of C{sub 60} radical cations and anions prepared simultaneously in solid argon

    SciTech Connect

    Schatz, P.N.; Gasyna, Z.; Andrews, L.

    1992-12-01

    The codeposition of C{sub 60} vapor with excess argon and concurrent argon resonance radiation has produced strong new absorptions at 973 and 1068 nm in solid argon at 11 {plus_minus} 1 K. A similar experiment with CCl{sub 4}, added to serve as an electron trap, reduced the yield of the 1068 nm band with little effect on the 973 nm absorption. The 973 nm band is assigned to C{sub 60}{sup +} produced by photoionization and the 1068 nm band to C{sub 60}{sup {minus}} formed by electron capture. These identifications are in excellent agreement with glassy matrix, solution and photoelectron spectra. Preliminary magnetic circular dichroism (MCD) spectra of the 973 nm C{sub 60}{sup +} band have also been measured. Both the 1068 and 973 nm bands show a characteristic triplet structure which is tentatively attributed to the combined effects of spin-orbit and Jahn-Teller coupling.

  13. LO-TO splittings, effective charges and interactions in electro-optic meta-nitroaniline crystal as studied by polarized IR reflection and transmission spectra

    NASA Astrophysics Data System (ADS)

    Szostak, M. M.; Le Calvé, N.; Romain, F.; Pasquier, B.

    1994-10-01

    The polarized IR reflection spectra of the meta-nitroaniline ( m-NA) single crystal along the a, b and c crystallographic axes as well as the b and c polarized transmission spectra have been measured in the 100-400 cm -1 region. The LO-TO splitting values have been calculated from the reflection spectra by fitting them with the four parameter dielectric function. The dipole moment derivatives, relevant to dynamic effective charges, of the vibrations have also been calculated and used to check the applicability of the oriented gas model (OGM) to reflection spectra. The discrepancies from the OGM have been discussed in terms of vibronic couplings, weak hydrogen bondings (HB) and intramolecular charge transfer.

  14. Far-IR Absorption Features of Titan Aerosol Analogs Produced from Aromatic Precursors

    NASA Astrophysics Data System (ADS)

    Sebree, Joshua; Trainer, M. G.; Anderson, C. M.; Loeffler, M. J.

    2012-10-01

    The arrival of the Cassini spacecraft in orbit around Saturn has led to the discovery of benzene (C6H6) at ppm levels, as well as large positive ions in Titan’s atmosphere, tentatively identified as polycyclic aromatic hydrocarbons (PAHs).[1] The presence of aromatic molecules, which are photolytically active in the ultraviolet, may be an important part of the formation of aerosol particles in Titan’s haze layers, even at these low concentrations. To date, there have been no laboratory experiments in the literature exploring this area of study. The analysis of data from the Composite Infrared Spectrometer (CIRS) on-board Cassini has recently uncovered a broad emission feature centered at 140 cm-1 in the far-IR that is unique to the aerosol layers of Titan’s atmosphere.[2] Current optical constants from laboratory-generated aerosol analogs have been unable to reproduce this feature.[3,4] From the broadness of this feature, we speculate that the emission is a blended composite of low-energy vibrations of large molecules such as PAHs and their nitrogen containing counterparts, polycyclic aromatic nitrogen heterocycles (PANHs). We hypothesize that the inclusion of trace amounts of aromatic precursors will aid in the production of these large structures in the laboratory-generated aerosols. In this study, we perform UV irradiation of several aromatic precursors, both with and without nitrogen heteroatoms, to understand their influence on the observable characteristics of the aerosol. Measured optical and chemical properties will be compared to those formed from CH4/N2 mixtures [5,6] as well as to those from Cassini observations. [1] Waite, J. H., et al. (2007) Science 316 870-875. [2] Anderson, C.M, et al. (2011) Icarus 212 762-778. [3] Khare, B.N., et al. (1984) Icarus 60 127-137. [4] Imanaka, H., et al. (2012) Icarus 218 247-261. [5] Trainer, M.G., et al. (2006) PNAS 103 18035-18042. [6] Trainer, M.G., et al. (2012) Astrobiology 12 315-326.

  15. Recalibration of the absorption/photodissociation spectra of CO and its isotopes between 91 and 115 nm

    NASA Technical Reports Server (NTRS)

    Eidelsberg, M.; Benayoun, J. J.; Viala, Y.; Rostas, F.; Smith, P. L.; Yoshino, K.; Stark, G.; Shettle, C. A.

    1992-01-01

    A systematic error has been identified in the wavelengths and wavenumbers presented in two papers concerning the absorption/dissociation spectra of CO and isotopes between 91.2 and 115.2 nm. The published wavelengths are about 10 mA (0.001 nm) too small for lines in the 91-100 nm range. A table of corrected band origins is provided.

  16. Features in optical absorption and photocurrent spectra of organic solar cells due to organic/organic interface

    NASA Astrophysics Data System (ADS)

    Ismail, Yasser A. M.; Soga, Tetsuo; Jimbo, Takashi

    2011-05-01

    We surprisingly found that, organic/organic interface had a direct and pronounced impact on optical absorption and photocurrent spectra of organic solar cell at a favorable wavelength region of the visible solar spectrum. The organic/organic interface was formed as a result of connection between coumarin 6 (C6): [6,6]-phenyl-C61 butyric acid methyl ester (PCBM) blend films and indium-tin oxide (ITO)/poly(3,4-ethylenedioxythiophene) doped with poly(styrene sulfonate) (PEDOT:PSS) electrode. Optical absorption measurement was carried out for ITO/PEDOT:PSS/C6:PCBM films, while external quantum efficiency measurement was carried out for ITO/PEDOT:PSS/C6:PCBM/Al solar cells, with varying C6:PCBM blend concentration. We found that, the C6:PCBM blend in the ITO/PEDOT:PSS/C6:PCBM films had an additional feature in the absorption spectra at the wavelength range of 520-800 nm, at which the C6 dye, PCBM, PEDOT:PSS, and ITO were transparent. An additional feature, also, appeared in photocurrent spectra of the C6:PCBM films in the ITO/PEDOT:PSS/C6:PCBM/Al solar cells at the same wavelength range. The new features in the optical absorption and photocurrent spectra of the investigated solar cells originated, in all probability, due to optically induced sup-band transitions in the C6:PCBM blend films at the interface with ITO/PEDOT:PSS electrode. Thus, the C6:PCBM blend films produced a charge carrier generation interface due to connection with ITO/PEDOT:PSS electrode. As a result of this charge carrier generation interface, the power conversion efficiency of the corresponding solar cell is improved. Taking into consideration these new findings, the high-band-gap organic materials will take more importance as sensitizers in organic optoelectronic applications.

  17. Interacting He and Ar atoms: Revised theoretical interaction potential, dipole moment, and collision-induced absorption spectra

    SciTech Connect

    Meyer, Wilfried; Frommhold, Lothar

    2015-09-21

    Coupled cluster quantum chemical calculations of the potential energy surface and the induced dipole surface are reported for the He–Ar van der Waals collisional complex. Spectroscopic parameters are derived from global analytical fits while an accurate value for the long-range dipole coefficient D{sub 7} is obtained by perturbation methods. Collision-induced absorption spectra are computed quantum mechanically and compared with existing measurements.

  18. Conformational effects in the absorption spectra and photochemistry of [2, n](9,10)anthracenophanes ( n = 2,3)

    NASA Astrophysics Data System (ADS)

    Dunand, Albert; Ferguson, James; Puza, Miroslav; Robertson, Glen B.

    1980-11-01

    The absorption spectra of [2.2](9,10)anthracenophane (1) and [2.3](9,10)anthracenophane (II), in condensed media, contain overlapping contributions from two conformational isomers with quite different spectra. The spectra of the two conformations of I and of one conformation of II have been separately determined by a solid state method. This involved the incorporation of the photoisomers of I (1,2,7,8,-tetrahydro-2a,6b[1',2']:8a, 12b[1″,2″] -dibenzenodibenzo [a,c] dicyclo- buta[e.g]cyclooctene) and II (1,2,8,9-tetrahydro-2a,6b[1',2']:9a,13b[1″,2″]-dibenzeno-7H-dibenzo[a,e]cyclobuta[c]-cyclopenta[g]cyclooctene) in host single crystals of the photoisomer of 1,3-di(9-anthryl)propane, I and II were then obtained by thermal dissociation and their spectra measured at 8 K. The two conformers of 1 were separated by photoselection, the rotated conformer being between 4 and 5 times more photoreactive than the translated conformer. A modified molecular force field program was used to simulate the environment around the guest molecule (I) and the resultant geometries and orientations in the (disordered) site of the host crystal are in excellent agreement with the polarization analysis of the absorption spectra. Two crystal orientations of the rotated conformer were found. For II, the rotated conformation, with two orientations, dominates the absorption spectrum and the translated conformer could not be obtained by photoselection. The force field program was used to calculate the molecular geometries (gas phase) of both conformations of I and II and their photoisomers, I was also obtained by ultraviolet photodissociation of its photoisomer at 8 K. Both conformers were obtained with the same ratio as for the thermally treated crystals. This result considered with the photoselection experiments, demonstrates that the reversible photoisomerization does not proceed via biradical intermediate.

  19. Rapid screening and identification of illicit drugs by IR absorption spectroscopy and gas chromatography

    NASA Astrophysics Data System (ADS)

    Mengali, Sandro; Liberatore, Nicola; Luciani, Domenico; Viola, Roberto; Cardinali, Gian Carlo; Elmi, Ivan; Poggi, Antonella; Zampolli, Stefano; Biavardi, Elisa; Dalcanale, Enrico; Bonadio, Federica; Delemont, Olivier; Esseiva, Pierre; Romolo, Francesco S.

    2013-01-01

    Analytical instruments based on InfraRed Absorption Spectroscopy (IRAS) and Gas Chromatography (GC) are today available only as bench-top instrumentation for forensic labs and bulk analysis. Within the 'DIRAC' project funded by the European Commission, we are developing an advanced portable sensor, that combines miniaturized GC as its key chemical separation tool, and IRAS in a Hollow Fiber (HF) as its key analytical tool, to detect and recognize illicit drugs and key precursors, as bulk and as traces. The HF-IRAS module essentially consists of a broadly tunable External Cavity (EC) Quantum Cascade Laser (QCL), thermo-electrically cooled MCT detectors, and an infrared hollow fiber at controlled temperature. The hollow fiber works as a miniaturized gas cell, that can be connected to the output of the GC column with minimal dead volumes. Indeed, the module has been coupled to GC columns of different internal diameter and stationary phase, and with a Vapour Phase Pre-concentrator (VPC) that selectively traps target chemicals from the air. The presentation will report the results of tests made with amphetamines and precursors, as pure substances, mixtures, and solutions. It will show that the sensor is capable of analyzing all the chemicals of interest, with limits of detection ranging from a few nanograms to about 100-200 ng. Furthermore, it is suitable to deal with vapours directly trapped from the headspace of a vessel, and with salts treated in a basic solution. When coupled to FAST GC columns, the module can analyze multi-components mixes in less than 5 minutes.

  20. Research program in nuclear and solid state physics. [including pion absorption spectra and muon spin precession

    NASA Technical Reports Server (NTRS)

    1974-01-01

    The survey of negative pion absorption reactions on light and medium nuclei was continued. Muon spin precession was studied using an iron target. An impulse approximation model of the pion absorption process implied that the ion will absorb almost exclusively on nucleon pairs, single nucleon absorption being suppressed by energy and momentum conservation requirements. For measurements on both paramagnetic and ferromagnetic iron, the external magnetic field was supplied by a large C-type electromagnet carrying a current of about 100 amperes.

  1. Application of Video Spectral Comparator (absorption spectra) for establishing the chronological order of intersecting printed strokes and writing pen strokes.

    PubMed

    Kaur, Ridamjeet; Saini, Komal; Sood, N C

    2013-06-01

    The sequence of intersecting strokes of laser printers (black, blue, red and green) and typewriter ink (black) with the strokes of gel pen ink, ballpoint pen ink and fountain pen ink (black, blue, red and green) has been determined by studying their absorption spectra. The absorption spectra have been generated for each of the two pure inks (i.e. A and B) and points of their intersections (i.e. A over B and B over A) by using Video Spectral Comparator (VSC-2000-HR). The study was carried out with an assumption that the peak characteristics of spectra from the point of intersection should correspond to the peak characteristics of pure ink which was executed later. It was observed that the absorption spectrum of intersection corresponds with either the laser printer or the typewriter ink stroke, whether these strokes were executed earlier or later than the writing instrument strokes. As the results obtained from the study were negative, the FDEs are advised against the practice of this technique in the examination of the sequence of intersecting strokes for these specified inks. PMID:23601731

  2. Application of Video Spectral Comparator (absorption spectra) for establishing the chronological order of intersecting printed strokes and writing pen strokes.

    PubMed

    Kaur, Ridamjeet; Saini, Komal; Sood, N C

    2013-06-01

    The sequence of intersecting strokes of laser printers (black, blue, red and green) and typewriter ink (black) with the strokes of gel pen ink, ballpoint pen ink and fountain pen ink (black, blue, red and green) has been determined by studying their absorption spectra. The absorption spectra have been generated for each of the two pure inks (i.e. A and B) and points of their intersections (i.e. A over B and B over A) by using Video Spectral Comparator (VSC-2000-HR). The study was carried out with an assumption that the peak characteristics of spectra from the point of intersection should correspond to the peak characteristics of pure ink which was executed later. It was observed that the absorption spectrum of intersection corresponds with either the laser printer or the typewriter ink stroke, whether these strokes were executed earlier or later than the writing instrument strokes. As the results obtained from the study were negative, the FDEs are advised against the practice of this technique in the examination of the sequence of intersecting strokes for these specified inks.

  3. pH-Induced changes in electronic absorption and fluorescence spectra of phenazine derivatives

    NASA Astrophysics Data System (ADS)

    Ryazanova, O. A.; Voloshin, I. M.; Makitruk, V. L.; Zozulya, V. N.; Karachevtsev, V. A.

    2007-04-01

    The visible electronic absorption and fluorescence spectra as well as fluorescence polarization degrees of imidazo-[4,5-d]-phenazine (F1), 2-methylimidazo-[4,5-d]-phenazine (F2), 2-trifluoridemethylimidazo-[4,5-d]-phenazine (F3), 1,2,3-triazole-[4,5-d]-phenazine (F4) and their glycosides, imidazo-[4,5-d]-phenazine-N1-β- D-ribofuranoside (F1rib), 1,2,3-triazole-[4,5-d]-phenazine-N1-β- D-glucopyranoside (F4gl), were investigated in aqueous buffered solutions over the pH range of 0-12, where the spectral transformations were found to be reversible. The effects of protonation and deprotonation on spectral properties of these dyes were studied. We have determined the ranges of pH, where individual ionic species are predominant. In aqueous buffered solutions the fluorescence was found only for neutral species of F1, F1rib, F2, and F4gl dyes, whereas for the ionic forms of these dyes, as well as for F3 and F4 ones, the fluorescence has not been detected. The concentrational deprotonation p Ka values were evaluated from experimental data. It was shown that donor-acceptor properties of the substituent group in the second position of the pentagonal ring substantially affect the values of the deprotonation constants and the character of protonation for chromophore. The substitution of a hydrogen atom in the NH-group by the sugar residue blocks the formation of the anionic species, and results in enhancement of the dye emission intensity. The steep emission dependence for F1 and F1rib over pH range of 0-7 with intensities ratio of IpH 7/ IpH 1 = 60 allows us to propose them as possible indicator dyes in luminescence based pH sensors for investigation of processes accompanied by acidification, e.g. as gastric pH-sensors. A comparative analysis of the studied dyes has shown that F4gl is the most promising compound to be used as a fluorescent probe for investigation of molecular hybridization of nucleic acids.

  4. A theoretical study on the molecular structure and vibrational (FT-IR and Raman) spectra of cyano-bridged heteronuclear polymeric complex of triethylenetetramine

    NASA Astrophysics Data System (ADS)

    Kürkçüoğlu, Güneş Süheyla; Çetinkaya, Fulya; Arslan, Taner

    The cyano bridged complex of triethylenetetramine was characterized by FT-IR, Raman spectroscopy and X-ray single crystal diffraction analysis. The molecular geometry and vibrational frequencies of the complex in the ground state have been calculated by using B3LYP density functional method with LANL2DZ basis set. A good correlation was found via comparison of the experimental and theoretical vibrational frequencies of complex. The complex of the type [Zn(teta)Ni(μ-CN)2(CN)2]n has been studied in the 4000-250 cm-1 region and assignment of all the observed bands were made. The analysis of the FT-IR and Raman spectra indicates that there are some structure spectra correlations.

  5. Electronic structure of some adenosine receptor antagonists. III. Quantitative investigation of the electronic absorption spectra of alkyl xanthines

    NASA Astrophysics Data System (ADS)

    Moustafa, H.; Shalaby, Samia H.; El-sawy, K. M.; Hilal, Rifaat

    2002-07-01

    Quantitative and comparative investigation of the electronic absorption spectra of theophylline, caffeine and their derivatives is reported. The spectra of theophylline, caffeine and theobromine were compared to establish the predominant tautomeric species in solution. This comparison, analysis of solvent effects and assignments of the observed transitions via MO computations indicate the exits of only one tautomeric species in solution that is the N7 form. A low-lying triplet state was identified which corresponds to a HOMO-LUMO transition. This relatively long-lived T 1 state is always less polar than the ground state and may very well underlie the photochemical reactivity of alkyl xanthines. Substituents of different electron donating or withdrawing strengths and solvent effects are investigated and analyzed. The present analysis is facilitated via computer deconvolution of the observed spectra and MO computation.

  6. Förster resonance energy transfer, absorption and emission spectra in multichromophoric systems. III. Exact stochastic path integral evaluation

    SciTech Connect

    Moix, Jeremy M.; Ma, Jian; Cao, Jianshu

    2015-03-07

    A numerically exact path integral treatment of the absorption and emission spectra of open quantum systems is presented that requires only the straightforward solution of a stochastic differential equation. The approach converges rapidly enabling the calculation of spectra of large excitonic systems across the complete range of system parameters and for arbitrary bath spectral densities. With the numerically exact absorption and emission operators, one can also immediately compute energy transfer rates using the multi-chromophoric Förster resonant energy transfer formalism. Benchmark calculations on the emission spectra of two level systems are presented demonstrating the efficacy of the stochastic approach. This is followed by calculations of the energy transfer rates between two weakly coupled dimer systems as a function of temperature and system-bath coupling strength. It is shown that the recently developed hybrid cumulant expansion (see Paper II) is the only perturbative method capable of generating uniformly reliable energy transfer rates and emission spectra across a broad range of system parameters.

  7. Searching for narrow absorption and emission lines in XMM-Newton spectra of gamma-ray bursts

    NASA Astrophysics Data System (ADS)

    Campana, S.; Braito, V.; D'Avanzo, P.; Ghirlanda, G.; Melandri, A.; Pescalli, A.; Salafia, O. S.; Salvaterra, R.; Tagliaferri, G.; Vergani, S. D.

    2016-08-01

    We present the results of a spectroscopic search for narrow emission and absorption features in the X-ray spectra of long gamma-ray burst (GRB) afterglows. Using XMM-Newton data, both EPIC and RGS spectra, of six bright (fluence > 10-7 erg cm-2) and relatively nearby (z = 0.54-1.41) GRBs, we performed a blind search for emission or absorption lines that could be related to a high cloud density or metal-rich gas in the environ close to the GRBs. We detected five emission features in four of the six GRBs with an overall statistical significance, assessed through Monte Carlo simulations, of ≲ 3.0σ. Most of the lines are detected around the observed energy of the oxygen edge at ~ 0.5 keV, suggesting that they are not related to the GRB environment but are most likely of Galactic origin. No significant absorption features were detected. A spectral fitting with a free Galactic column density (NH) testing different models for the Galactic absorption confirms this origin because we found an indication of an excess of Galactic NH in these four GRBs with respect to the tabulated values.

  8. Effects of annealing treatment and gamma irradiation on the absorption and fluorescence spectra of Cr:GSGG laser crystal

    NASA Astrophysics Data System (ADS)

    Sun, D. L.; Luo, J. Q.; Xiao, J. Z.; Zhang, Q. L.; Jiang, H. H.; Yin, S. T.; Wang, Y. F.; Ge, X. W.

    2008-09-01

    The influence of annealing treatments and gamma-ray irradiation on the absorption and fluorescence spectra of Cr:GSGG crystals grown by the Czochralski method has been investigated. Two absorption bands located near 686 nm and 1050 nm were weakened markedly after the crystal was re-annealed in H2 atmosphere, which is due to the Cr4+ ions being de-oxidized into Cr3+ ions. The other two weak additional absorption bands induced by gamma-ray irradiation appearing near 310 nm and 480 nm are ascribed to the Fe2+ ions and F-type color centers, respectively. In particular, the gamma-ray irradiation with a dose of 100 Mrad has an effect of improving slightly the luminescence properties of Cr:GSGG crystals. The improvement mechanism is analyzed and discussed.

  9. The concept of effective film thickness for the determination of bond concentrations from IR spectra of weakly absorbing thin films on silicon

    NASA Astrophysics Data System (ADS)

    Brendel, R.

    1991-06-01

    Thin-film bond concentrations can be determined from infrared transmission and reflection spectra. Simply using the Lambert-Beer law can lead to errors of 80%. The concept of effective film thickness presented here avoids these errors and still allows a quick determination of the absorption coefficient without using a computer. It fully takes into account the effects of multiple reflections. For weakly absorbing thin films on silicon the effective film thickness was calculated numerically (i) for normal incidence transmission spectra and (ii) for 20° reflection spectra with a mirror behind the sample. The latter method is of general interest for the investigation of weak absorptions as it avoids the disturbing interference oscillations and its sensitivity is about twice that of a transmission measurement. The numerical results are verified experimentally for Si-H and N-H vibrations in plasma silicon nitride and analytically for the thin-film limit.

  10. Comparison between mass spectra of individual organic particles generated by UV laser ablation and in the IR/UV two-step mode

    NASA Astrophysics Data System (ADS)

    Zelenyuk, Alla; Yang, Juan; Imre, Dan

    2009-04-01

    In ablation-based single particle mass spectrometry it is common to find that the mass spectra of particles with identical compositions exhibit significant particle-to-particle fluctuations and high degree of fragmentation. This is particularly true when it comes to particles containing organic compounds. At laser fluence that is sufficient to ionize sulfates, mass spectra of the identical organic particles are classified into multitude of classes, some of which are indistinguishable from elemental carbon. In contrast, the individual particle mass spectra generated in two-step mode, in which an IR laser pulse is used to evaporate the semivolatile particle components and a time delayed UV laser pulse is used to ionize the evaporating plume, exhibit greatly diminished particle-to-particle fluctuations and significantly improved mass spectral quality. Since individual particle mass spectra must first be classified and only then can be averaged and analyzed, the IR/UV mode greatly improves the capability to properly quantify particle compositions. We present an experimental investigation of the properties and behavior of individual particle mass spectra of organic particles that are generated by ablation and in the two-step mode as function of UV laser fluence and the delay between the two lasers. The study shows that the two-step mode yields highly reproducible mass spectra that contain sufficient detail to allow molecular identification. In addition it produces significantly higher mass spectral intensities that are linearly related to the mass of organics in the particles. In contrast, ablation generated mass spectra were found to exhibit high degree of fragmentation and large particle-to-particle fluctuations.

  11. UV-UV hole burning and IR dip spectroscopy of homophenylalanine by laser desorption supersonic jet technique

    NASA Astrophysics Data System (ADS)

    Sohn, Woon Yong; Ishiuchi, Shun-ichi; Çarçabal, Pierre; Oba, Hikari; Fujii, Masaaki

    2014-12-01

    Conformer selected electronic and vibrational spectra of homophenylalanine, phenylalanine analogue molecule, were measured by UV-UV hole burning and IR dip spectroscopy combined with laser desorption technique. 10 conformers were found by UV-UV hole burning spectroscopy and their structures were assigned by IR dip and UV absorption spectra with aid of quantum chemical calculations in both S0 and S1. This study shows that the combination of simulated IR and UV spectra is powerful to assign flexible molecules.

  12. Computed and Experimental Absorption Spectra of the Perovskite CH3NH3PbI3.

    PubMed

    Zhu, Xi; Su, Haibin; Marcus, Rudolph A; Michel-Beyerle, Maria E

    2014-09-01

    Electronic structure and light absorption properties of the perovskite CH3NH3PbI3 are investigated by relativistic density functional theory with quasiparticle GW corrections and many-body interactions. The nature of the Wannier exciton is studied by solving the Bethe-Salpeter equation augmented with the analysis of a conceptual hydrogen-like model. The computed absorption spectrum unravels a remarkable absorption "gap" between the first two absorption peaks. This discontinuity is maintained in the calculated tetragonal structure that, however, is not stable at low temperature. Most importantly, the discontinuity is also observed in the experimental absorption spectrum of the orthorhombic single crystal at low temperature (4 K). However, in contrast to the single crystal, in a polycrystalline perovskite film at 5 K the "gap" is filled by a monotonously increasing absorption throughout the visible range. This feature of thin films points to the potential significance of defect absorption for the excellent light harvesting properties of perovskite-based solar cells. PMID:26278260

  13. Molecular structure, vibrational spectroscopic (FT-IR, FT-Raman), UV-vis spectra, first order hyperpolarizability, NBO analysis, HOMO and LUMO analysis, thermodynamic properties of benzophenone 2,4-dicarboxylic acid by ab initio HF and density functional method

    NASA Astrophysics Data System (ADS)

    Chaitanya, K.

    2012-02-01

    The FT-IR (4000-450 cm -1) and FT-Raman spectra (3500-100 cm -1) of benzophenone 2,4-dicarboxylic acid (2,4-BDA) have been recorded in the condensed state. Density functional theory calculation with B3LYP/6-31G(d,p) basis set have been used to determine ground state molecular geometries (bond lengths and bond angles), harmonic vibrational frequencies, infrared intensities, Raman activities and bonding features of the title compounds. The assignments of the vibrational spectra have been carried out with the help of normal co-ordinate analysis (NCA) following the scaled quantum mechanical force field (SQMFF) methodology. The first order hyperpolarizability ( β0) and related properties ( β, α0 and Δ α) of 2,4-BDA is calculated using HF/6-31G(d,p) method on the finite-field approach. The stability of molecule has been analyzed by using NBO analysis. The calculated first hyperpolarizability shows that the molecule is an attractive molecule for future applications in non-linear optics. The calculated HOMO and LUMO energies show that charge transfer occurs within these molecules. Mulliken population analysis on atomic charges is also calculated. Because of vibrational analyses, the thermodynamic properties of the title compound at different temperatures have been calculated. Finally, the UV-vis spectra and electronic absorption properties were explained and illustrated from the frontier molecular orbitals.

  14. High-level ab initio computations of the absorption spectra of organic iridium complexes.

    PubMed

    Plasser, Felix; Dreuw, Andreas

    2015-02-12

    The excited states of fac-tris(phenylpyridinato)iridium [Ir(ppy)3] and the smaller model complex Ir(C3H4N)3 are computed using a number of high-level ab initio methods, including the recently implemented algebraic diagrammatic construction method to third-order ADC(3). A detailed description of the states is provided through advanced analysis methods, which allow a quantification of different charge transfer and orbital relaxation effects and give extended insight into the many-body wave functions. Compared to the ADC(3) benchmark an unexpected striking difference of ADC(2) is found for Ir(C3H4N)3, which derives from an overstabilization of charge transfer effects. Time-dependent density functional theory (TDDFT) using the B3LYP functional shows an analogous but less severe error for charge transfer states, whereas the ωB97 results are in good agreement with ADC(3). Multireference configuration interaction computations, which are in reasonable agreement with ADC(3), reveal that static correlation does not play a significant role. In the case of the larger Ir(ppy)3 complex, results at the TDDFT/B3LYP and TDDFT/ωB97 levels of theory are presented. Strong discrepancies between the two functionals, which are found with respect to the energies, characters, as well as the density of the low lying states, are discussed in detail and compared to experiment. PMID:25584785

  15. Synthesis and selective IR absorption properties of iminodiacetic-acid intercalated MgAl-layered double hydroxide

    SciTech Connect

    Wang Lijing; Xu Xiangyu; Evans, David G.; Duan Xue; Li Dianqing

    2010-05-15

    An MgAl-NO{sub 3}-layered double hydroxide (LDH) precursor has been prepared by a method involving separate nucleation and aging steps (SNAS). Reaction with iminodiacetic acid (IDA) under weakly acidic conditions led to the replacement of the interlayer nitrate anions by iminodiacetic acid anions. The product was characterized by XRD, FT-IR, TG-DTA, ICP, elemental analysis and SEM. The results show that the original interlayer nitrate anions of LDHs precursor were replaced by iminodiacetic acid anions and that the resulting intercalation product MgAl-IDA-LDH has an ordered crystalline structure. MgAl-IDA-LDH was mixed with low density polyethylene (LDPE) using a masterbatch method. LDPE films filled with MgAl-IDA-LDH showed a higher mid to far infrared absorption than films filled with MgAl-CO{sub 3}-LDH in the 7-25 {mu}m range, particularly in the key 9-11 {mu}m range required for application in agricultural plastic films. - Graphical abstract: Intercalation of iminodiacetic acid (IDA) anions in a MgAl-NO{sub 3}-layered double hydroxide host leads to an enhancement of its infrared absorbing ability for application in agricultural plastic films.

  16. Absorption spectra of AgI at pressures to 136 kbar

    SciTech Connect

    Liebenberg, D.H.; Hudson, J.

    1981-01-01

    Spectral absorption measurements in AgI are reported at pressures up to 136 kbar using a diamond anvil cell. In the NaCl phase between 5 and 70 kbar the absorption edge shift is found to be nearly linear with pressure. No indication of a sudden jump into a CsCl phase is found near 100 kbar and the possible influence of larger pressure gradients in earlier measurements is discussed.

  17. Sticking to (first) principles: quantum molecular dynamics and Bayesian probabilistic methods to simulate aquatic pollutant absorption spectra.

    PubMed

    Trerayapiwat, Kasidet; Ricke, Nathan; Cohen, Peter; Poblete, Alex; Rudel, Holly; Eustis, Soren N

    2016-08-10

    This work explores the relationship between theoretically predicted excitation energies and experimental molar absorption spectra as they pertain to environmental aquatic photochemistry. An overview of pertinent Quantum Chemical descriptions of sunlight-driven electronic transitions in organic pollutants is presented. Second, a combined molecular dynamics (MD), time-dependent density functional theory (TD-DFT) analysis of the ultraviolet to visible (UV-Vis) absorption spectra of six model organic compounds is presented alongside accurate experimental data. The functional relationship between the experimentally observed molar absorption spectrum and the discrete quantum transitions is examined. A rigorous comparison of the accuracy of the theoretical transition energies (ΔES0→Sn) and oscillator strength (fS0→Sn) is afforded by the probabilistic convolution and deconvolution procedure described. This method of deconvolution of experimental spectra using a Gaussian Mixture Model combined with Bayesian Information Criteria (BIC) to determine the mean (μ) and standard deviation (σ) as well as the number of observed singlet to singlet transition energy state distributions. This procedure allows a direct comparison of the one-electron (quantum) transitions that are the result of quantum chemical calculations and the ensemble of non-adiabatic quantum states that produce the macroscopic effect of a molar absorption spectrum. Poor agreement between the vertical excitation energies produced from TD-DFT calculations with five different functionals (CAM-B3LYP, PBE0, M06-2X, BP86, and LC-BLYP) suggest a failure of the theory to capture the low energy, environmentally important, electronic transitions in our model organic pollutants. However, the method of explicit-solvation of the organic solute using the quantum Effective Fragment Potential (EFP) in a density functional molecular dynamics trajectory simulation shows promise as a robust model of the hydrated organic

  18. Theoretical UV absorption spectra of hydrodynamically escaping O{sub 2}/CO{sub 2}-rich exoplanetary atmospheres

    SciTech Connect

    Gronoff, G.; Mertens, C. J.; Norman, R. B.; Maggiolo, R.; Wedlund, C. Simon; Bell, J.; Bernard, D.; Parkinson, C. J.; Vidal-Madjar, A.

    2014-06-20

    Characterizing Earth- and Venus-like exoplanets' atmospheres to determine if they are habitable and how they are evolving (e.g., equilibrium or strong erosion) is a challenge. For that endeavor, a key element is the retrieval of the exospheric temperature, which is a marker of some of the processes occurring in the lower layers and controls a large part of the atmospheric escape. We describe a method to determine the exospheric temperature of an O{sub 2}- and/or CO{sub 2}-rich transiting exoplanet, and we simulate the respective spectra of such a planet in hydrostatic equilibrium and hydrodynamic escape. The observation of hydrodynamically escaping atmospheres in young planets may help constrain and improve our understanding of the evolution of the solar system's terrestrial planets' atmospheres. We use the dependency of the absorption spectra of the O{sub 2} and CO{sub 2} molecules on the temperature to estimate the temperature independently of the total absorption of the planet. Combining two observables (two parts of the UV spectra that have a different temperature dependency) with the model, we are able to determine the thermospheric density profile and temperature. If the slope of the density profile is inconsistent with the temperature, then we infer the hydrodynamic escape. We address the question of the possible biases in the application of the method to future observations, and we show that the flare activity should be cautiously monitored to avoid large biases.

  19. SYNCHROTRON POLARIZATION AND SYNCHROTRON SELF-ABSORPTION SPECTRA FOR A POWER-LAW PARTICLE DISTRIBUTION WITH FINITE ENERGY RANGE

    SciTech Connect

    Fouka, M.; Ouichaoui, S. E-mail: souichaoui@usthb.dz

    2011-12-10

    We have derived asymptotic forms for the degree of polarization of the optically thin synchrotron and for synchrotron self-absorption (SSA) spectra assuming a power-law particle distribution of the form N({gamma}) {approx} {gamma}{sup -p} with {gamma}{sub 1} < {gamma} < {gamma}{sub 2}, especially for a finite high-energy limit, {gamma}{sub 2}, in the case of an arbitrary pitch angle. The new results inferred concern more especially the high-frequency range x >> {eta}{sup 2} with parameter {eta} = {gamma}{sub 2}/{gamma}{sub 1}. The calculated SSA spectra concern instantaneous photon emission where cooling effects are not considered. They have been obtained by also ignoring likely effects such as Comptonization, pair creation and annihilation, as well as magnetic photon splitting. To that aim, in addition to the two usual absorption frequencies, a third possible one has been derived and expressed in terms of the Lambert W function based on the analytical asymptotic form of the absorption coefficient, {alpha}{sub {nu}}, for the high-frequency range {nu} >> {nu}{sub 2} (with {nu}{sub 2} the synchrotron frequency corresponding to {gamma}{sub 2}). We have shown that the latter frequency may not have realistic applications in astrophysics, except in the case of an adequate set of parameters allowing one to neglect Comptonization effects. More detailed calculations and discussions are presented.

  20. a Theoretical Model for Wide-Band Infrared-Absorption Molecular Spectra at any Pressure: Fiction or Reality?

    NASA Astrophysics Data System (ADS)

    Buldyreva, Jeanna; Vander Auwera, Jean

    2014-06-01

    Various atmospheric applications require modeling of infrared absorption by the main atmospheric species in wide ranges of frequencies, pressures and temperatures. For different pressure regimes, different mechanisms are responsible for the observed intensities of vibration-rotation line manifolds, and the structure of the bands changes drastically when going from low to high densities. Therefore, no universal theoretical model exists presently to interpret simultaneously collapsed band-shapes observed at very high pressures and isolated-line shapes recorded in sub-atmospheric regimes. Using CO_2 absorption spectra as an example, we introduce some improvements in the non-Markovian Energy-Corrected Sudden model, developed for high-density spectra of arbitrary tensorial rank and generalized recently to parallel and perpendicular infrared absorption bands, and test the applicability of this approach for the case of nearly Doppler pressure regime via comparisons with recently recorded experimental intensities. J.V. Buldyreva and L. Bonamy, Phys. Rev. A 60(1), 370-376 (1999). J. Buldyreva and L. Daneshvar, J. Chem. Phys. 139, 164107 (2013). L. Daneshvar, T. Földes, J. Buldyreva, J. Vander Auwera, J. Quant. Spectrosc. Radiat. Transfer 2014 (to be submitted).

  1. Study on the interaction between fluoroquinolones and erythrosine by absorption, fluorescence and resonance Rayleigh scattering spectra and their application

    NASA Astrophysics Data System (ADS)

    Wang, Jian; Liu, Zhongfang; Liu, Jiangtao; Liu, Shaopu; Shen, Wei

    2008-03-01

    In pH 4.4-4.5 Britton-Robinson (BR) buffer solution, fluoroquinolone antibiotics (FLQs) including ciprofloxacin (CIP), norfloxacin (NOR), levofloxacin (LEV) and lomefloxacin (LOM) could react with erythrosine (Ery) to form 1:1 ion-association complexes, which not only resulted in the changes of the absorption spectra and the quenching of fluorescence, but also resulted in the great enhancement of resonance Rayleigh scattering (RRS). These offered some indications of the determination of fluoroquinolone antibiotics by spectrophotometric, fluorescence and resonance Rayleigh scattering methods. The detection limits for fluoroquinolone antibiotics were in the range of 0.097-0.265 μg/mL for absorption methods, 0.022-0.100 μg/mL for fluorophotometry and 0.014-0.027 μg/mL for RRS method, respectively. Among them, the RRS method had the highest sensitivity. In this work, the spectral characteristics of the absorption, fluorescence and RRS, the optimum conditions of the reactions and the properties of the analytical chemistry were investigated. The methods have been successfully applied to determination of some fluoroquinolone antibiotics in human urine samples and tablets. Taking CIP-Ery system as an example, the charge distribution, the enthalpy of formation and the mean polarizability were calculated by density function theory (DFT) method. In addition, the reasons for the enhancement of scattering spectra were discussed.

  2. NEW ACCURATE MEASUREMENT OF {sup 36}ArH{sup +} AND {sup 38}ArH{sup +} RO-VIBRATIONAL TRANSITIONS BY HIGH RESOLUTION IR ABSORPTION SPECTROSCOPY

    SciTech Connect

    Cueto, M.; Herrero, V. J.; Tanarro, I.; Doménech, J. L.; Cernicharo, J.; Barlow, M. J.; Swinyard, B. M.

    2014-03-01

    The protonated argon ion, {sup 36}ArH{sup +}, was recently identified in the Crab Nebula from Herschel spectra. Given the atmospheric opacity at the frequency of its J = 1-0 and J = 2-1 rotational transitions (617.5 and 1234.6 GHz, respectively), and the current lack of appropriate space observatories after the recent end of the Herschel mission, future studies on this molecule will rely on mid-infrared observations. We report on accurate wavenumber measurements of {sup 36}ArH{sup +} and {sup 38}ArH{sup +} rotation-vibration transitions in the v = 1-0 band in the range 4.1-3.7 μm (2450-2715 cm{sup –1}). The wavenumbers of the R(0) transitions of the v = 1-0 band are 2612.50135 ± 0.00033 and 2610.70177 ± 0.00042 cm{sup –1} (±3σ) for {sup 36}ArH{sup +} and {sup 38}ArH{sup +}, respectively. The calculated opacity for a gas thermalized at a temperature of 100 K and with a linewidth of 1 km s{sup –1} of the R(0) line is 1.6 × 10{sup –15} × N({sup 36}ArH{sup +}). For column densities of {sup 36}ArH{sup +} larger than 1 × 10{sup 13} cm{sup –2}, significant absorption by the R(0) line can be expected against bright mid-IR sources.

  3. Hydration of hyaluronan polysaccharide observed by IR spectrometry. II. Definition and quantitative analysis of elementary hydration spectra and water uptake.

    PubMed

    Haxaire, K; Maréchal, Y; Milas, M; Rinaudo, M

    2003-01-01

    We recorded a series of spectra of sodium hyaluronan (HA) films that were in equilibrium with their surrounding humid atmosphere. The hygrometry of this atmosphere extended from 0 to 0.97% relative humidity. We performed a quantitative analysis of the corresponding series of hydration spectra that are the difference spectra of the film at a defined hygrometry minus the spectrum of the dried film (hygrometry = 0). The principle of this analysis is to use this series of hydration spectra to define a limited number (four) of "elementary hydration spectra" over which we can decompose all hydration spectra with good accuracy. This decomposition, combined with the measurements of the numbers of H(2)O molecules at the origin in these elementary hydration spectra of the three characteristic vibrational bands of H(2)O, allowed us to calculate the hydration number under different relative humidity conditions. This number compares well with that determined by thermogravimetry. Furthermore, the decomposition defines for each hygrometry value which chemical mechanisms represented by elementary hydration spectra are active. This analysis is pursued by determining for the elementary hydration spectra the number of hydrogen bonds established by each of the four alcohol groups found in each disaccharide repeat unit before performing the same analysis for amide and carboxylate groups. These results are later utilized to discuss the structure of HA at various stages of hydration. PMID:12722111

  4. H/D isotopic recognition and temperature effects in IR spectra of hydrogen-bonded cyclic dimers in crystals: 3-Methylcinnamic acid and 4-phenylbutyric acid

    NASA Astrophysics Data System (ADS)

    Hachuła, Barbara; Jabłońska-Czapla, Magdalena; Flakus, Henryk T.; Nowak, Maria; Kusz, Joachim

    2015-01-01

    In the present work, the experimental and theoretical study of the nature of the inter-hydrogen bond interactions in two different carboxylic acids, 3-methylcinnamic acid (3MCA) and 4-phenylbutyric acid (4PBA), were reported. The polarized IR spectra of 3MCA and 4PBA crystals were recorded at the frequency ranges of the νOsbnd H and νOsbnd D bands. The spectral properties of 3MCA and 4PBA interpreted with the aid of the calculations based on the "strong-coupling" model. The differences in the spectral properties of the two different dimeric systems in the crystals provide a valuable information about the existence of a direct relationship between the crystal spectral properties in IR and the electronic structure of the molecular systems. In 3MCA crystals strong vibrational exciton interactions favor a "tail-to-head" (TH)-type Davydov coupling widespread via the π-electrons, whereas in 4PBA crystals a weak "through-space" (SS) exciton coupling is responsible for a "side-to-side"-type coupling. The relative contribution of each individual exciton coupling mechanism in IR spectra generation strongly depends on temperature and molecular electronic structure. The H/D isotopic recognition effect, depending on a non-random distribution of protons and deuterons in the crystal hydrogen bridges, was also analyzed.

  5. Vibronic model for H/D isotopic “self-organization” effects in hydrogen bond cyclic trimeric systems: 4-Bromopyrazole crystal IR spectra

    NASA Astrophysics Data System (ADS)

    Flakus, Henryk T.; Pyzik, Aleksandra

    2006-04-01

    In this paper, a theoretical model has been proposed, aiming to explain a new kind of H/D isotopic effects concerning hydrogen bond systems, i.e. the H/D isotopic "self-organization" effects, recently deduced from the IR spectra of molecular crystals. The problem of existence of these kinds of co-operative effects was considered in the limits of a vibronic model in the Herzberg-Teller approximation, for cyclic trimeric systems of hydrogen bonds. It was shown that non-conventional attraction forces between three identical hydrogen isotope atoms, resulting from the vibronic mechanism, are responsible for excess stabilization energy of cyclic hydrogen bond trimers. The H/D "self-organization" effects were deduced to be negligible in the case of non-symmetric HDD, or HHD-type trimers, containing both, hydrogen and deuterium bonds in one ring trimer. The symmetric trimers of the HHH and of the DDD-type should be more stable, when compared with the HDD, or the HHD-type trimer properties. This thermodynamic effect explains the IR spectral properties of molecular crystals containing cyclic trimers of hydrogen bonds in their lattices, accompanying to isotopic dilution. The results of the theoretical considerations were confronted with the IR spectra of 4-bromopyrazole crystals, which were measured in a wide temperature range (from 298 to 77 K), using polarized light, in the frequency ranges of the proton or deuterium stretching vibrations bands.

  6. Solvents effect on the absorption and fluorescence spectra of 7-diethylamino-3-thenoylcoumarin: Evaluation and correlation between solvatochromism and solvent polarity parameters

    NASA Astrophysics Data System (ADS)

    Basavaraja, Jana; Inamdar, S. R.; Suresh Kumar, H. M.

    2015-02-01

    Effect of solvents of varying polarities on absorption and fluorescence spectra and dipole moment of laser dye: 7-diethylamino-3-thenoylcoumarin (DETC) has been investigated. A small band shift is obtained in the absorption spectra compared to emission spectra. The spectral shifts were correlated with Catalan's parameters using linear solvation energy relationship. It reveals that non-specific interaction measured by solvent polarity has more influence on absorption and solvent dipolarity contribution is significant in case of fluorescence. A bathochromic shift observed in absorption and emission spectra with increasing solvent polarity, which implied that the transition involved is π → π∗. The solvatochromic correlations were used to estimate the excited state dipole moment using experimentally determined ground state dipole moment. The observed single-state excited state dipole moment is found to be greater than the ground state.

  7. Extraction of pigment information from near-UV vis absorption spectra of extra virgin olive oils.

    PubMed

    Domenici, Valentina; Ancora, Donatella; Cifelli, Mario; Serani, Andrea; Veracini, Carlo Alberto; Zandomeneghi, Maurizio

    2014-09-24

    This work reports a new approach to extract the maximum chemical information from the absorption spectrum of extra virgin olive oils (EVOOs) in the 390-720 nm spectral range, where "oil pigments" dominate the light absorption. Four most important pigments, i.e., two carotenoids (lutein and β-carotene) and two chlorophylls (pheophytin-a and pheophytin-b), are chosen as reference oil pigments, being present in all the reported analytical data regarding pigments of EVOOs. The method allows the quantification of the concentration values of these four pigments directly from the deconvolution of the measured absorption spectrum of EVOOs. Advantages and limits of the method and the reliability of the pigment family quantification are discussed. The main point of this work is the description of a fast and simple method to extract of such information in less than a minute, through the mathematical analysis of the UV-vis spectrum of untreated samples of oil.

  8. Disentangling vibronic and solvent broadening effects in the absorption spectra of coumarin derivatives for dye sensitized solar cells.

    PubMed

    Cerezo, Javier; Avila Ferrer, Francisco J; Santoro, Fabrizio

    2015-05-01

    We simulate from first-principles the absorption spectra of five structure-related coumarin derivatives utilized in dye sensitized solar cells (DSSCs), investigating the vibronic and solvent contributions to the position and width of the spectra in ethanol. Ground and excited state potential energy surfaces (PESs) are modeled by Density Functional Theory (DFT) and its time-dependent (TD) expression for the excited state (TD-DFT). The solute vibronic structure associated with the spectrum is calculated by a TD formalism, accounting for both Duschinsky and temperature effects, while solvent inhomogeneous broadening is evaluated according to Marcus' theory, computing the solvent reorganization energy by the state-specific implementation of the polarizable continuum model (PCM) within TD-DFT. We adopted both the standard hybrid PBE0 and the range separated CAM-B3LYP functionals showing that the latter performs better both concerning the vibronic and solvent-induced contributions to the absorption lineshape. The different predictions of the two functionals are then rationalized in terms of the charge transfer (CT) character of the transitions showing that, in this class of compounds, it is strongly dependent on the nuclear structure. Such a dependence introduces a bias in the PBE0 PES that has a drastic impact on the vibronic spectra. We show that both the intrinsic vibronic structure and the solvent broadening play a relevant role in differentiating the absorption width of the five dyes. In this sense, our results provide a guide to understand the sources of spectral broadening of this family of dyes, a valuable help for a rational design of new molecules to improve DSSC devices.

  9. All-electron first-principles GW+Bethe-Salpeter calculation for optical absorption spectra of sodium clusters

    SciTech Connect

    Noguchi, Yoshifumi; Ohno, Kaoru

    2010-04-15

    The optical absorption spectra of sodium clusters (Na{sub 2n}, n{<=} 4) are calculated by using an all-electron first-principles GW+Bethe-Salpeter method with the mixed-basis approach within the Tamm-Dancoff approximation. In these small systems, the excitonic effect strongly affects the optical properties due to the confinement of exciton in the small system size. The present state-of-the-art method treats the electron-hole two-particle Green's function by incorporating the ladder diagrams up to the infinite order and therefore takes into account the excitonic effect in a good approximation. We check the accuracy of the present method by comparing the resulting spectra with experiments. In addition, the effect of delocalization in particular in the lowest unoccupied molecular orbital in the GW quasiparticle wave function is also discussed by rediagonalizing the Dyson equation.

  10. The effect of pathological processes on absorption and scattering spectra of samples of bile and pancreatic juice

    NASA Astrophysics Data System (ADS)

    Giraev, K. M.; Ashurbekov, N. A.; Magomedov, M. A.; Murtazaeva, A. A.; Medzhidov, R. T.

    2015-07-01

    Spectra of optical transmission coefficients and optical reflectance for bile and pancreatic juice samples were measured experimentally for different forms of pathologies of the pancreas within the range of 250-2500 nm. The absorption and scattering spectra, as well as the spectrum of the anisotropy factor of scattering, were determined based on the results obtained using the reverse Monte Carlo method. The surface morphology for the corresponding samples of the biological media was studied employing electron microscopy. The dynamics of the optical properties of the biological media was determined depending on the stage of the pathology. It has been demonstrated that the results of the study presented are in a good agreement with pathophysiological data and could supplement and broaden the results of conventional methods for diagnostics of the pancreas.

  11. Absorption spectra of two-level atoms interacting with a strong polychromatic pump field and an arbitrarily intense probe field

    NASA Astrophysics Data System (ADS)

    Yoon, Tai Hyun; Chung, Myung Sai; Lee, Hai-Woong

    1999-09-01

    A numerical method is introduced that solves the optical Bloch equations describing a two-level atom interacting with a strong polychromatic pump field with an equidistant spectrum and an arbitrarily intense monochromatic probe field. The method involves a transformation of the optical Bloch equations into a system of equations with time-independent coefficients at steady state via double harmonic expansion of the density-matrix elements, which is then solved by the method of matrix inversion. The solutions so obtained lead immediately to the determination of the polarization of the atomic medium and of the absorption and dispersion spectra. The method is applied to the case when the pump field is bichromatic and trichromatic, and the physical interpretation of the numerically computed spectra is given.

  12. Upper limits for stratospheric H2O2 and HOCl from high resolution balloon-borne infrared solar absorption spectra

    NASA Technical Reports Server (NTRS)

    Larsen, J. C.; Rinsland, C. P.; Goldman, A.; Murcray, D. G.; Murcray, F. J.

    1985-01-01

    Solar absorption spectra from two stratospheric balloon flights have been analyzed for the presence of H2O2 and HOCl absorption in the 1230.0 to 1255.0 per cm region. The data were recorded at 0.02 per cm resolution during sunset with the University of Denver interferometer system on October 27, 1978 and March 23, 1981. Selected spectral regions were analyzed with the technique of nonlinear least squares spectral curve fitting. Upper limits of 0.33 ppbv for H2O2 and 0.36 ppbv for HOCl near 28 km are derived from the 1978 flight data while upper limits of 0.44 ppbv for H2O2 and 0.43 ppbv for HOCl at 29.5 km are obtained from the 1981 flight data.

  13. First detection of ionized helium absorption lines in infrared K band spectra of O-type stars

    NASA Technical Reports Server (NTRS)

    Conti, Peter S.; Block, David L.; Geballe, T. R.; Hanson, Margaret M.

    1993-01-01

    We have obtained high SNR, moderate-resolution K band spectra of two early O-type main sequence stars, HD 46150 O5 V, and HD 46223 O4 V, in the Rosette Nebula. We report the detection, for the first time, of the 2.189 micron He II line in O-type stars. Also detected is the 2.1661 micron Br-gamma line in absorption. The 2.058 micron He I line appears to be present in absorption in both stars, although its appearance at our resolution is complicated by atmospheric features. These three lines can form the basis for a spectral classification system for hot stars in the K band that may be used at infrared wavelengths to elucidate the nature of those luminous stars in otherwise obscured H II and giant H II regions.

  14. Final State Projection Method in Charge-Transfer Multiplet Calculations: An analysis of Ti L-edge Absorption Spectra

    PubMed Central

    Kroll, Thomas; Solomon, Edward I.; de Groot, Frank M. F.

    2016-01-01

    A projection method to determine the final state configuration character of all peaks in a charge transfer multiplet calculation of a 2p X-ray absorption spectrum is presented using a d0 system as an example. The projection method is used to identify the most important influences on spectral shape and to map out the configuration weights. The spectral shape of a 2p X-ray absorption or L2,3-edge spectrum is largely determined by the ratio of the 2p core-hole interactions relative to the 2p3d atomic multiplet interaction. This leads to a non-trivial spectral assignment, which makes a detailed theoretical description of experimental spectra valuable for the analysis of bonding. PMID:26226507

  15. Final-State Projection Method in Charge-Transfer Multiplet Calculations: An Analysis of Ti L-Edge Absorption Spectra.

    PubMed

    Kroll, Thomas; Solomon, Edward I; de Groot, Frank M F

    2015-10-29

    A projection method to determine the final-state configuration character of all peaks in a charge transfer multiplet calculation of a 2p X-ray absorption spectrum is presented using a d(0) system as an example. The projection method is used to identify the most important influences on spectral shape and to map out the configuration weights. The spectral shape of a 2p X-ray absorption or L2,3-edge spectrum is largely determined by the ratio of the 2p core-hole interactions relative to the 2p3d atomic multiplet interaction. This leads to a nontrivial spectral assignment, which makes a detailed theoretical description of experimental spectra valuable for the analysis of bonding. PMID:26226507

  16. Absorption spectra and optical parameters of lithium-potassium sulphate single crystals

    NASA Astrophysics Data System (ADS)

    El-Fadl, A. Abu; Gaffar, M. A.; Omar, M. H.

    1999-09-01

    The optical transmittance and reflectance near the fundamental absorption region along the c- and a-axes of lithium potassium sulphate single crystal (LKS) are measured at room temperature. From the data the absorption coefficient ( α) and the optical band gap ( Eopt.g) were deduced. The type of transition was determined. The steepness parameter ( σ), the temperature dependence of the energy gap and the exciton energy ( E0) were also calculated. The extinction coefficient, the refractive index and both the real and imaginary parts of the dielectric permittivity were calculated as functions of the photon energy.

  17. Dynamics of intramolecular electron transfer reaction of FAD studied by magnetic field effects on transient absorption spectra.

    PubMed

    Murakami, Masaaki; Maeda, Kiminori; Arai, Tatsuo

    2005-07-01

    The kinetics of intermediates generated from intramolecular electron-transfer reaction by photo irradiation of the flavin adenine dinucleotide (FAD) molecule was studied by a magnetic field effect (MFE) on transient absorption (TA) spectra. Existence time of MFE and MFE action spectra have a strong dependence on the pH of solutions. The MFE action spectra have indicated the existence of interconversion between the radical pair and the cation form of the triplet excited state of flavin part. All rate constants of the triplet and the radical pair were determined by analysis of the MFE action spectra and decay kinetics of TA. The obtained values for the interconversion indicate that the formation of cation radical promotes the back electron-transfer reaction to the triplet excited state. Further, rate constants of spin relaxation and recombination have been studied by the time profiles of MFE at various pH. The drastic change of those two factors has been obtained and can be explained by SOC (spin-orbit coupling) induced back electron-transfer promoted by the formation of a stacking conformation at pH > 2.5.

  18. Restricted active space calculations of L-edge X-ray absorption spectra: from molecular orbitals to multiplet states.

    PubMed

    Pinjari, Rahul V; Delcey, Mickaël G; Guo, Meiyuan; Odelius, Michael; Lundberg, Marcus

    2014-09-28

    The metal L-edge (2p → 3d) X-ray absorption spectra are affected by a number of different interactions: electron-electron repulsion, spin-orbit coupling, and charge transfer between metal and ligands, which makes the simulation of spectra challenging. The core restricted active space (RAS) method is an accurate and flexible approach that can be used to calculate X-ray spectra of a wide range of medium-sized systems without any symmetry constraints. Here, the applicability of the method is tested in detail by simulating three ferric (3d(5)) model systems with well-known electronic structure, viz., atomic Fe(3+), high-spin [FeCl6](3-) with ligand donor bonding, and low-spin [Fe(CN)6](3-) that also has metal backbonding. For these systems, the performance of the core RAS method, which does not require any system-dependent parameters, is comparable to that of the commonly used semi-empirical charge-transfer multiplet model. It handles orbitally degenerate ground states, accurately describes metal-ligand interactions, and includes both single and multiple excitations. The results are sensitive to the choice of orbitals in the active space and this sensitivity can be used to assign spectral features. A method has also been developed to analyze the calculated X-ray spectra using a chemically intuitive molecular orbital picture.

  19. Cost and sensitivity of restricted active-space calculations of metal L-edge X-ray absorption spectra.

    PubMed

    Pinjari, Rahul V; Delcey, Mickaël G; Guo, Meiyuan; Odelius, Michael; Lundberg, Marcus

    2016-02-15

    The restricted active-space (RAS) approach can accurately simulate metal L-edge X-ray absorption spectra of first-row transition metal complexes without the use of any fitting parameters. These characteristics provide a unique capability to identify unknown chemical species and to analyze their electronic structure. To find the best balance between cost and accuracy, the sensitivity of the simulated spectra with respect to the method variables has been tested for two models, [FeCl6 ](3-) and [Fe(CN)6 ](3-) . For these systems, the reference calculations give deviations, when compared with experiment, of ≤1 eV in peak positions, ≤30% for the relative intensity of major peaks, and ≤50% for minor peaks. When compared with these deviations, the simulated spectra are sensitive to the number of final states, the inclusion of dynamical correlation, and the ionization potential electron affinity shift, in addition to the selection of the active space. The spectra are less sensitive to the quality of the basis set and even a double-ζ basis gives reasonable results. The inclusion of dynamical correlation through second-order perturbation theory can be done efficiently using the state-specific formalism without correlating the core orbitals. Although these observations are not directly transferable to other systems, they can, together with a cost analysis, aid in the design of RAS models and help to extend the use of this powerful approach to a wider range of transition metal systems.

  20. X-ray absorption spectra of water within a plane-wave Car-Parrinello molecular dynamics framework

    NASA Astrophysics Data System (ADS)

    Cavalleri, Matteo; Odelius, Michael; Nilsson, Anders; Pettersson, Lars G. M.

    2004-11-01

    We describe the implementation of a simple technique to simulate core-level spectra within the Car-Parrinello plane-waves molecular dynamics framework. The x-ray absorption (XA) spectra are generated using the transition potential technique with the effect of the core hole included through a specifically developed pseudopotential for the core-excited atom. Despite the lack of 1s core orbitals in the pseudopotential treatment, the required transition moments are accurately calculated without reconstruction of the all-electron orbitals. The method is applied to the oxygen XA spectra of water in its various aggregation states, but it is transferable to any first-row element. The computed spectra are compared favorably with the results from all-electron cluster calculations, as well as with experimental data. The periodicity of the plane-wave technique improves the description of condensed phases. The molecular dynamics simulation enables in principle a proper treatment of thermal effects and dynamical averaging in complex systems.