Relationship between Prevailing Oceanographic conditions on the fishing operations in the Northern Indian Ocean

NASA Astrophysics Data System (ADS)

Moazzam Khan, Muhammad

2014-05-01

Marked seasonality in fishing operation and catch composition was observed in the Northern Indian Ocean. These variations are more pronounced and noticeable in case of trawling for fish and shrimp as well as in the surface gillnetting for tuna and large pelagics. Although oceanographic conditions of the Northern Indian Ocean has been studied comprehensively, some facets of these are not well understood especially their relation with the fish distribution and abundance. Important oceanographic factors especially migration of oxygen minimum layer towards coastal areas after the cessation of South-West Monsoon seems to the most important factor responsible for the seasonal variation in the fishing intensity and species composition. Distribution and abundance of some of the commercially important marine animals especially billfishes was observed to be associated with the physical features of the area especially their abundance was noticed along continental margin and on the ridges in the Arabian Sea. The paper describes seasonal variation in abundance and catch composition of various fishing operations in the Indian Ocean and relates its to prevailing oceanographic conditions. Fishermen traditional knowledge about the seasonality of these conditions is also documented in the paper.

Temporal variations in the abundance and composition of biofilm communities colonizing drinking water distribution pipes.

PubMed

Kelly, John J; Minalt, Nicole; Culotti, Alessandro; Pryor, Marsha; Packman, Aaron

2014-01-01

Pipes that transport drinking water through municipal drinking water distribution systems (DWDS) are challenging habitats for microorganisms. Distribution networks are dark, oligotrophic and contain disinfectants; yet microbes frequently form biofilms attached to interior surfaces of DWDS pipes. Relatively little is known about the species composition and ecology of these biofilms due to challenges associated with sample acquisition from actual DWDS. We report the analysis of biofilms from five pipe samples collected from the same region of a DWDS in Florida, USA, over an 18 month period between February 2011 and August 2012. The bacterial abundance and composition of biofilm communities within the pipes were analyzed by heterotrophic plate counts and tag pyrosequencing of 16S rRNA genes, respectively. Bacterial numbers varied significantly based on sampling date and were positively correlated with water temperature and the concentration of nitrate. However, there was no significant relationship between the concentration of disinfectant in the drinking water (monochloramine) and the abundance of bacteria within the biofilms. Pyrosequencing analysis identified a total of 677 operational taxonomic units (OTUs) (3% distance) within the biofilms but indicated that community diversity was low and varied between sampling dates. Biofilms were dominated by a few taxa, specifically Methylomonas, Acinetobacter, Mycobacterium, and Xanthomonadaceae, and the dominant taxa within the biofilms varied dramatically between sampling times. The drinking water characteristics most strongly correlated with bacterial community composition were concentrations of nitrate, ammonium, total chlorine and monochloramine, as well as alkalinity and hardness. Biofilms from the sampling date with the highest nitrate concentration were the most abundant and diverse and were dominated by Acinetobacter.

Microplastic abundance, distribution and composition along a latitudinal gradient in the Atlantic Ocean.

PubMed

Kanhai, La Daana K; Officer, Rick; Lyashevska, Olga; Thompson, Richard C; O'Connor, Ian

2017-02-15

Microplastics in the world's oceans are a global concern due to the potential threat they pose to marine organisms. This study investigated microplastic abundance, distribution and composition in the Atlantic Ocean on a transect from the Bay of Biscay to Cape Town, South Africa. Microplastics were sampled from sub-surface waters using the underway system of the RV Polarstern. Potential microplastics were isolated from samples and FT-IR spectroscopy was used to identify polymer types. Of the particles analysed, 63% were rayon and 37% were synthetic polymers. The majority of microplastics were identified as polyesters (49%) and blends of polyamide or acrylic/polyester (43%). Overall, fibres (94%) were predominant. Average microplastic abundance in the Atlantic Ocean was 1.15±1.45particlesm -3 . Of the 76 samples, 14 were from the Benguela upwelling and there was no statistically significant difference in microplastic abundance between upwelled and non-upwelled sites. Copyright © 2016 Elsevier Ltd. All rights reserved.

Fire patterns of South Eastern Queensland in a global context: A review

Treesearch

Philip Le C. F. Stewart; Patrick T. Moss

2015-01-01

Fire is an important driver in ecosystem evolution, composition, structure and distribution, and is vital for maintaining ecosystems of the Great Sandy Region (GSR). Charcoal records for the area dating back over 40, 000 years provide evidence of the great changes in vegetation composition, distribution and abundance in the region over time as a result of fire. Fires...

Multi-Scale Action Effectiveness Research in the Lower Columbia River and Estuary, 2011

DTIC Science & Technology

2012-05-01

MONITOR’S REPORT NUMBER(S) 12. DISTRIBUTION /AVAILABILITY STATEMENT Approved for public release; distribution unlimited 13. SUPPLEMENTARY NOTES 14...the diets of juvenile Chinook salmon and abundant resident fish species. 1.b. Describe the compositions of prey pools in tidal freshwater habitats of...captured at the SRD sites during the May 2010–September 2011 time period. Unmarked Chinook salmon were the most abundant . The patterns associated with

Comparison of freshwater mussel communities from 1988 to 2015 in the Cedar Creek Watershed, Indiana

USDA-ARS?s Scientific Manuscript database

Out of the 300 genera of freshwater mussels (Unionidae) represented in North America, most species have shown declines in abundance and distribution largely due to human-mediated factors. This study compares current community composition, abundance and richness of mussels in Cedar Creek, Indiana wit...

Distribution and Diversity of Soil Microfauna from East Antarctica: Assessing the Link between Biotic and Abiotic Factors

PubMed Central

Velasco-Castrillón, Alejandro; Schultz, Mark B.; Colombo, Federica; Gibson, John A. E.; Davies, Kerrie A.; Austin, Andrew D.; Stevens, Mark I.

2014-01-01

Terrestrial life in Antarctica has been described as some of the simplest on the planet, and mainly confined to soil microfaunal communities. Studies have suggested that the lack of diversity is due to extreme environmental conditions and thought to be driven by abiotic factors. In this study we investigated soil microfauna composition, abundance, and distribution in East Antarctica, and assessed correlations with soil geochemistry and environmental variables. We examined 109 soil samples from a wide range of ice-free habitats, spanning 2000 km from Framnes Mountains to Bailey Peninsula. Microfauna across all samples were patchily distributed, from complete absence of invertebrates to over 1600 specimens/gram of dry weight of soil (gdw), with highest microfauna abundance observed in samples with visible vegetation. Bdelloid rotifers were on average the most widespread found in 87% of sampled sites and the most abundant (44 specimens/gdw). Tardigrades occurred in 57% of the sampled sites with an abundance of 12 specimens/gdw. Nematodes occurred in 71% of samples with a total abundance of 3 specimens/gdw. Ciliates and mites were rarely found in soil samples, with an average abundance of 1.3 and 0.04 specimens/gdw, respectively. We found that microfaunal composition and abundance were mostly correlated with the soil geochemical parameters; phosphorus, NO3 − and salinity, and likely to be the result of soil properties and historic landscape formation and alteration, rather than the geographic region they were sampled from. Studies focusing on Antarctic biodiversity must take into account soil geochemical and environmental factors that influence population and species heterogeneity. PMID:24498126

Temporal Variations in the Abundance and Composition of Biofilm Communities Colonizing Drinking Water Distribution Pipes

PubMed Central

Kelly, John J.; Minalt, Nicole; Culotti, Alessandro; Pryor, Marsha; Packman, Aaron

2014-01-01

Pipes that transport drinking water through municipal drinking water distribution systems (DWDS) are challenging habitats for microorganisms. Distribution networks are dark, oligotrophic and contain disinfectants; yet microbes frequently form biofilms attached to interior surfaces of DWDS pipes. Relatively little is known about the species composition and ecology of these biofilms due to challenges associated with sample acquisition from actual DWDS. We report the analysis of biofilms from five pipe samples collected from the same region of a DWDS in Florida, USA, over an 18 month period between February 2011 and August 2012. The bacterial abundance and composition of biofilm communities within the pipes were analyzed by heterotrophic plate counts and tag pyrosequencing of 16S rRNA genes, respectively. Bacterial numbers varied significantly based on sampling date and were positively correlated with water temperature and the concentration of nitrate. However, there was no significant relationship between the concentration of disinfectant in the drinking water (monochloramine) and the abundance of bacteria within the biofilms. Pyrosequencing analysis identified a total of 677 operational taxonomic units (OTUs) (3% distance) within the biofilms but indicated that community diversity was low and varied between sampling dates. Biofilms were dominated by a few taxa, specifically Methylomonas, Acinetobacter, Mycobacterium, and Xanthomonadaceae, and the dominant taxa within the biofilms varied dramatically between sampling times. The drinking water characteristics most strongly correlated with bacterial community composition were concentrations of nitrate, ammonium, total chlorine and monochloramine, as well as alkalinity and hardness. Biofilms from the sampling date with the highest nitrate concentration were the most abundant and diverse and were dominated by Acinetobacter. PMID:24858562

The Effect of Metal Composition on Fe-Ni Partition Behavior between Olivine and FeNi-Metal, FeNi-Carbide, FeNi-Sulfide at Elevated Pressure

NASA Technical Reports Server (NTRS)

Holzheid, Astrid; Grove, Timothy L.

2005-01-01

Metal-olivine Fe-Ni exchange distribution coefficients were determined at 1500 C over the pressure range of 1 to 9 GPa for solid and liquid alloy compositions. The metal alloy composition was varied with respect to the Fe/Ni ratio and the amount of dissolved carbon and sulfur. The Fe/Ni ratio of the metal phase exercises an important control on the abundance of Ni in the olivine. The Ni abundance in the olivine decreases as the Fe/Ni ratio of the coexisting metal increases. The presence of carbon (up to approx. 3.5 wt.%) and sulfur (up to approx. 7.5 wt.%) in solution in the liquid Fe-Ni-metal phase has a minor effect on the partitioning of Fe and Ni between metal and olivine phases. No pressure dependence of the Fe-Ni-metal-olivine exchange behavior in carbon- and sulfur-free and carbon- and sulfur-containing systems was found within the investigated pressure range. To match the Ni abundance in terrestrial mantle olivine, assuming an equilibrium metal-olivine distribution, a sub-chondritic Fe/Ni-metal ratio that is a factor of 17 to 27 lower than the Fe/Ni ratios in estimated Earth core compositions would be required, implying higher Fe concentrations in the core forming metal phase. A simple metal-olivine equilibrium distribution does not seem to be feasible to explain the Ni abundances in the Earth's mantle. An equilibrium between metal and olivine does not exercise a control on the problem of Ni overabundance in the Earth's mantle. The experimental results do not contradict the presence of a magma ocean at the time of terrestrial core formation, if olivine was present in only minor amounts at the time of metal segregation.

Resource distribution and group size in the common langur Semnopithecus entellus in southern India.

PubMed

Vasudev, Divya; Kumar, Ajith; Sinha, Anindya

2008-07-01

We investigated the influence of resource abundance and distribution on the group size and composition of the common langur Semnopithecus entellus in the contiguous forests of Bandipur National Park, Mudumalai Wildlife Sanctuary and Nagarahole National Park in southern India. We also explored any additional effect of predator pressure and the risk of take-over on the same attributes. Data on group composition and vegetation were collected from January to May 2006. The size and composition of 94 bisexual groups were obtained. The group size varied from 7 to 40 and the groups included unimale and multimale groups. Thirty-five all-male groups were encountered. Vegetation was sampled from 17 grids of dimension 1 km x 1 km, each containing twelve 25 m x 25 m plots. The list of food species was compiled from previous studies and observations made during the study period. The mean basal area of all the food trees within each plot and its coefficient of variation at the level of the grid were used to represent resource abundance and distribution, respectively. The number of adult females and males within groups were analyzed separately to test for differential effects on age-sex categories. Group size increased as resources became spatially more heterogeneous. The abundance of resources had a negative effect on group size. This study did not find evidence supporting the direct effect of predator presence or of the risk of take-over. Contrary to what were expected, adult males reacted more strongly and predictably to resources than did adult females. The group attributes and their relationship with food resource abundance and distribution differed between two sites in the study area possibly owing to langur subspecies differences.

Driving factors behind the distribution of dinocyst composition and abundance in surface sediments in a western Mediterranean coastal lagoon: report from a high resolution mapping study.

PubMed

Fertouna-Bellakhal, Mouna; Dhib, Amel; Béjaoui, Béchir; Turki, Souad; Aleya, Lotfi

2014-07-15

Species composition and abundance of dinocysts in relation to environmental factors were studied at 123 stations of surface sediment in Bizerte Lagoon. Forty-eight dinocyst types were identified, mainly dominated by Brigantidinium simplex, Votadinum spinosum, Alexandrium pseudogonyaulax, Alexandrium catenella, and Lingulodinum machaerophorum along with many round brown cysts and spiny round brown cysts. Cysts ranged from 1276 to 20126 cysts g(-1)dry weight sediment. Significant differences in cyst distribution pattern were recorded among the zones, with a higher cyst abundance occurring in the lagoon's inner areas. Redundancy analyses showed two distinct associations of dinocysts according to location and environmental variables. Ballast water discharges are potential introducers of non-indigenous species, especially harmful ones such as A. catenella and Polysphaeridium zoharyi, with currents playing a pivotal role in cyst distribution. Findings concerning harmful cyst species indicate potential seedbeds for initiation of future blooms and outbreaks of potentially toxic species in the lagoon. Copyright © 2014 Elsevier Ltd. All rights reserved.

Distribution and abundance of fish larvae in the northern Ionian Sea (Eastern Mediterranean)

NASA Astrophysics Data System (ADS)

Granata, Antonia; Cubeta, Annaluce; Minutoli, Roberta; Bergamasco, Alessandro; Guglielmo, Letterio

2011-09-01

The purpose of this paper was to study the spatial distribution, abundance and composition of fish larvae in the northern Ionian Sea. Samples were collected to the 600 m depth with an electronic multinet BIONESS during the "INTERREG Italia-Grecia" oceanographic cruise carried out in March 2000 off the Apulian Italian coast. A total of 46 species of teleost early stages were collected, belonging to 38 genera and 22 families. Over 52% of the larvae identified were mesopelagic species, almost 27% were demersal and about 21% pelagic. A total of 307 myctophids, 69 clupeids and 61 gadid post-larvae dominated the community. Benthosema glaciale (mean 6.1 mm SL) was the most abundant species (21.6%), the most frequent in the samples (28.8%), and dominant in the whole study area (mean 1.4 ind/100 m3). Particular attention was given to the horizontal and vertical distribution and abundance of the three dominant post-larval species: Benthosema glaciale, Sprattus sprattus sprattus and Notoscopelus elongatus. The Pearson coefficient ( R = 0.734) showed a high correlation between total zooplankton and fish larval assemblages in terms of spatial distribution abundance values. Regarding the vertical distribution of fish larvae, Sorensen's index ( S = 0.69) showed that fish larvae and total zooplankton abundance peaks co-occurred along the water column.

Hierarchical analysis of species distributions and abundance across environmental gradients

Treesearch

Jeffery Diez; Ronald H. Pulliam

2007-01-01

Abiotic and biotic processes operate at multiple spatial and temporal scales to shape many ecological processes, including species distributions and demography. Current debate about the relative roles of niche-based and stochastic processes in shaping species distributions and community composition reflects, in part, the challenge of understanding how these processes...

Microbial Community Structure and Activity Linked to Contrasting Biogeochemical Gradients in Bog and Fen Environments of the Glacial Lake Agassiz Peatland

PubMed Central

Lin, X.; Green, S.; Tfaily, M. M.; Prakash, O.; Konstantinidis, K. T.; Corbett, J. E.; Chanton, J. P.; Cooper, W. T.

2012-01-01

The abundances, compositions, and activities of microbial communities were investigated at bog and fen sites in the Glacial Lake Agassiz Peatland of northwestern Minnesota. These sites contrast in the reactivity of dissolved organic matter (DOM) and the presence or absence of groundwater inputs. Microbial community composition was characterized using pyrosequencing and clone library construction of phylogenetic marker genes. Microbial distribution patterns were linked to pH, concentrations of dissolved organic carbon and nitrogen, C/N ratios, optical properties of DOM, and activities of laccase and peroxidase enzymes. Both bacterial and archaeal richness and rRNA gene abundance were >2 times higher on average in the fen than in the bog, in agreement with a higher pH, labile DOM content, and enhanced enzyme activities in the fen. Fungi were equivalent to an average of 1.4% of total prokaryotes in gene abundance assayed by quantitative PCR. Results revealed statistically distinct spatial patterns between bacterial and fungal communities. Fungal distribution did not covary with pH and DOM optical properties and was vertically stratified, with a prevalence of Ascomycota and Basidiomycota near the surface and much higher representation of Zygomycota in the subsurface. In contrast, bacterial community composition largely varied between environments, with the bog dominated by Acidobacteria (61% of total sequences), while the Firmicutes (52%) dominated in the fen. Acetoclastic Methanosarcinales showed a much higher relative abundance in the bog, in contrast to the dominance of diverse hydrogenotrophic methanogens in the fen. This is the first quantitative and compositional analysis of three microbial domains in peatlands and demonstrates that the microbial abundance, diversity, and activity parallel with the pronounced differences in environmental variables between bog and fen sites. PMID:22843538

Rare earth elements in the sedimentary cycle - A pilot study of the first leg

NASA Technical Reports Server (NTRS)

Basu, A.; Blanchard, D. P.; Brannon, J. C.

1982-01-01

The effects of source rock composition and climate on the natural abundances of rare elements (REE) in the first leg of the sedimentary cycle are evaluated using a study with Holocene fluvia sands. The medium grained sand fraction of samples collected from first order streams exclusively draining granitic plutons in Montana (semi-arid), Georgia (humid), and South Carolina (humid) are analyzed. It is found that the REE distribution patterns (but not the total absolute abundances) of the daughter sands are very similar, despite compositional differences between parent plutons. Averages of the three areas are determined to have a La/Lu ratio of about 103, showing a depletion of heavy REE with respect to an average granite (La/Lu = 79) or the composition of North American Shales (La/Lu = 55). However, the Eu/Sm ratio in sands from these areas is about 0.22, which is very close to this ratio in North American Shales (0.21), although the overall REE distribution of these sands is not similar to that of the North American Shales in any way. It is concluded that the major rock type, but neither its minor subdivisions nor the climate, controls the REE distribution patterns in first cycle daughter sands, although the total and the parent rock-normalized abundances of REE in sands from humid areas are much lower than those in sands from arid areas.

First Investigation of Microbial Community Composition in the Bridge (Gadeok Channel) between the Jinhae-Masan Bay and the South Sea of Korea

NASA Astrophysics Data System (ADS)

Lee, Jiyoung; Lim, Jae-Hyun; Park, Junhyung; Youn, Seok-Hyun; Oh, Hyun-Ju; Kim, Ju-Hyoung; Kim, Myung Kyum; Cho, Hyeyoun; Yoon, Joo-Eun; Kim, Soyeon; Markkandan, Kesavan; Park, Ki-Tae; Kim, Il-Nam

2018-02-01

Microbial community composition varies based on seasonal dynamics (summer: strongly stratified water column; autumn: weakly stratified water column; winter: vertically homogeneous water column) and vertical distributions (surface, middle, and bottom depths) in the Gadeok Channel, which is the primary passage to exchange waters and materials between the Jinhae-Masan Bay and the South Sea waters. The microbial community composition was analyzed from June to December 2016 using 16S rRNA gene sequencing. The community was dominated by the phyla Proteobacteria (45%), Bacteroidetes (18%), Cyanobacteria (15%), Verrucomicrobia (6%), and Actinobacteria (6%). Alphaproteobacteria (29%) was the most abundant microbial class, followed by Flavobacteria (15%) and Gammaproteobacteria (15%) in all samples. The composition of the microbial communities was found to vary vertically and seasonally. The orders Flavobacteriales and Stramenopiles showed opposing seasonal patterns; Flavobacteriales was more abundant in August and December while Stramenopiles showed high abundance in June and October at all depths. The genus Synechococcus reached extremely high abundance (14%) in the June surface water column, but was much less abundant in December water columns. Clustering analysis showed that there was a difference in the microbial community composition pattern between the strongly stratified season and well-mixed season. These results indicate that the seasonal dynamics of physicochemical and hydrologic conditions throughout the water column are important parameters in shaping the microbial community composition in the Gadeok Channel.

nirS-Encoding denitrifier community composition, distribution, and abundance along the coastal wetlands of China.

PubMed

Gao, Juan; Hou, Lijun; Zheng, Yanling; Liu, Min; Yin, Guoyu; Li, Xiaofei; Lin, Xianbiao; Yu, Chendi; Wang, Rong; Jiang, Xiaofen; Sun, Xiuru

2016-10-01

For the past few decades, human activities have intensively increased the reactive nitrogen enrichment in China's coastal wetlands. Although denitrification is a critical pathway of nitrogen removal, the understanding of denitrifier community dynamics driving denitrification remains limited in the coastal wetlands. In this study, the diversity, abundance, and community composition of nirS-encoding denitrifiers were analyzed to reveal their variations in China's coastal wetlands. Diverse nirS sequences were obtained and more than 98 % of them shared considerable phylogenetic similarity with sequences obtained from aquatic systems (marine/estuarine/coastal sediments and hypoxia sea water). Clone library analysis revealed that the distribution and composition of nirS-harboring denitrifiers had a significant latitudinal differentiation, but without a seasonal shift. Canonical correspondence analysis showed that the community structure of nirS-encoding denitrifiers was significantly related to temperature and ammonium concentration. The nirS gene abundance ranged from 4.3 × 10(5) to 3.7 × 10(7) copies g(-1) dry sediment, with a significant spatial heterogeneity. Among all detected environmental factors, temperature was a key factor affecting not only the nirS gene abundance but also the community structure of nirS-type denitrifiers. Overall, this study significantly enhances our understanding of the structure and dynamics of denitrifying communities in the coastal wetlands of China.

Shifts in the abundance and community structure of soil ammonia oxidizers in a wet sclerophyll forest under long-term prescribed burning.

PubMed

Long, Xi-En; Chen, Chengrong; Xu, Zhihong; He, Ji-Zheng

2014-02-01

Fire shapes global biome distribution and promotes the terrestrial biogeochemical cycles. Ammonia-oxidizing bacteria (AOB) and archaea (AOA) play a vital role in the biogeochemical cycling of nitrogen (N). However, behaviors of AOB and AOA under long-term prescribed burning remain unclear. This study was to examine how fire affected the abundances and communities of soil AOB and AOA. A long-term repeated forest fire experiment with three burning treatments (never burnt, B0; biennially burnt, B2; and quadrennially burnt, B4) was used in this study. The abundances and community structure of soil AOB and AOA were determined using quantitative PCR, restriction fragment length polymorphism and clone library. More frequent fires (B2) increased the abundance of bacterium amoA gene, but tended to decrease archaeal amoA genes. Fire also modified the composition of AOA and AOB communities. Canonical correspondence analysis showed soil pH and dissolved organic C (DOC) strongly affected AOB genotypes, while nitrate-N and DOC shaped the AOA distribution. The increased abundance of bacterium amoA gene by fires may imply an important role of AOB in nitrification in fire-affected soils. The fire-induced shift in the community composition of AOB and AOA demonstrates that fire can disturb nutrient cycles. © 2013.

The effect of grain size and surface area on organic matter, lignin and carbohydrate concentration, and molecular compositions in Peru Margin sediments

USGS Publications Warehouse

Bergamaschi, B.A.; Tsamakis, E.; Keil, R.G.; Eglinton, T.I.; Montlucon, D.B.; Hedges, J.I.

1997-01-01

A C-rich sediment sample from the Peru Margin was sorted into nine hydrodynamically-determined grain size fractions to explore the effect of grain size distribution and sediment surface area on organic matter content and composition. The neutral monomeric carbohydrate composition, lignin oxidation product yields, total organic carbon, and total nitrogen contents were determined independently for each size fraction, in addition to sediment surface area and abundance of biogenic opal. The percent organic carbon and percent total nitrogen were strongly related to surface area in these sediments. In turn, the distribution of surface area closely followed mass distribution among the textural size classes, suggesting hydrodynamic controls on grain size also control organic carbon content. Nevertheless, organic compositional distinctions were observed between textural size classes. Total neutral carbohydrate yields in the Peru Margin sediments were found to closely parallel trends in total organic carbon, increasing in abundance among grain size fractions in proportion to sediment surface area. Coincident with the increases in absolute abundance, rhamnose and mannose increased as a fraction of the total carbohydrate yield in concert with surface area, indicating these monomers were preferentially represented in carbohydrates associated with surfaces. Lignin oxidation product yields varied with surface area when normalized to organic carbon, suggesting that the terrestrially-derived component may be diluted by sorption of marine derived material. Lignin-based parameters suggest a separate source for terrestrially derived material associated with sand-size material as opposed to that associated with silts and clays. Copyright ?? 1997 Elsevier Science Ltd.

The effect of grain size and surface area on organic matter, lignin and carbohydrate concentration, and molecular compositions in Peru Margin sediments

NASA Astrophysics Data System (ADS)

Bergamaschi, Brian A.; Tsamakis, Elizabeth; Keil, Richard G.; Eglinton, Timothy I.; Montluçon, Daniel B.; Hedges, John I.

1997-03-01

A C-rich sediment sample from the Peru Margin was sorted into nine hydrodynamically-determined grain size fractions to explore the effect of grain size distribution and sediment surface area on organic matter content and composition. The neutral monomeric carbohydrate composition, lignin oxidation product yields, total organic carbon, and total nitrogen contents were determined independently for each size fraction, in addition to sediment surface area and abundance of biogenic opal. The percent organic carbon and percent total nitrogen were strongly related to surface area in these sediments. In turn, the distribution of surface area closely followed mass distribution among the textural size classes, suggesting hydrodynamic controls on grain size also control organic carbon content. Nevertheless, organic compositional distinctions were observed between textural size classes. Total neutral carbohydrate yields in the Peru Margin sediments were found to closely parallel trends in total organic carbon, increasing in abundance among grain size fractions in proportion to sediment surface area. Coincident with the increases in absolute abundance, rhamnose and mannose increased as a fraction of the total carbohydrate yield in concert with surface area, indicating these monomers were preferentially represented in carbohydrates associated with surfaces. Lignin oxidation product yields varied with surface area when normalized to organic carbon, suggesting that the terrestrially-derived component may be diluted by sorption of marine derived material. Lignin-based parameters suggest a separate source for terrestrially derived material associated with sand-size material as opposed to that associated with silts and clays.

Community- Weighted Mean Plant Traits Predict Small Scale Distribution of Insect Root Herbivore Abundance

PubMed Central

Jeltsch, Florian; Wurst, Susanne

2015-01-01

Small scale distribution of insect root herbivores may promote plant species diversity by creating patches of different herbivore pressure. However, determinants of small scale distribution of insect root herbivores, and impact of land use intensity on their small scale distribution are largely unknown. We sampled insect root herbivores and measured vegetation parameters and soil water content along transects in grasslands of different management intensity in three regions in Germany. We calculated community-weighted mean plant traits to test whether the functional plant community composition determines the small scale distribution of insect root herbivores. To analyze spatial patterns in plant species and trait composition and insect root herbivore abundance we computed Mantel correlograms. Insect root herbivores mainly comprised click beetle (Coleoptera, Elateridae) larvae (43%) in the investigated grasslands. Total insect root herbivore numbers were positively related to community-weighted mean traits indicating high plant growth rates and biomass (specific leaf area, reproductive- and vegetative plant height), and negatively related to plant traits indicating poor tissue quality (leaf C/N ratio). Generalist Elaterid larvae, when analyzed independently, were also positively related to high plant growth rates and furthermore to root dry mass, but were not related to tissue quality. Insect root herbivore numbers were not related to plant cover, plant species richness and soil water content. Plant species composition and to a lesser extent plant trait composition displayed spatial autocorrelation, which was not influenced by land use intensity. Insect root herbivore abundance was not spatially autocorrelated. We conclude that in semi-natural grasslands with a high share of generalist insect root herbivores, insect root herbivores affiliate with large, fast growing plants, presumably because of availability of high quantities of food. Affiliation of insect root herbivores with large, fast growing plants may counteract dominance of those species, thus promoting plant diversity. PMID:26517119

Amphibian diversity and threatened species in a severely transformed neotropical region in Mexico.

PubMed

Meza-Parral, Yocoyani; Pineda, Eduardo

2015-01-01

Many regions around the world concentrate a large number of highly endangered species that have very restricted distributions. The mountainous region of central Veracruz, Mexico, is considered a priority area for amphibian conservation because of its high level of endemism and the number of threatened species. The original tropical montane cloud forest in the region has been dramatically reduced and fragmented and is now mainly confined to ravines and hillsides. We evaluated the current situation of amphibian diversity in the cloud forest fragments of this region by analyzing species richness and abundance, comparing assemblage structure and species composition, examining the distribution and abundance of threatened species, and identifying the local and landscape variables associated with the observed amphibian diversity. From June to October 2012 we sampled ten forest fragments, investing 944 person-hours of sampling effort. A total of 895 amphibians belonging to 16 species were recorded. Notable differences in species richness, abundance, and assemblage structure between forest fragments were observed. Species composition between pairs of fragments differed by an average of 53%, with the majority (58%) resulting from species replacement and the rest (42%) explained by differences in species richness. Half of the species detected are under threat of extinction according to the International Union for Conservation of Nature, and although their distribution and abundance varied markedly, there were also ubiquitous and abundant species, along with rare species of restricted distribution. The evident heterogeneity of the ten study sites indicates that to conserve amphibians in a mountainous region such as this one it is necessary to protect groups of fragments which represent the variability of the system. Both individually and together cloud forest fragments are very important to conservation because each remnant is inhabited by several threatened species, some of them at imminent risk of extinction.

The role of topographic structure and soil macrofauna presence at spoil heaps during spontaneous succession.

NASA Astrophysics Data System (ADS)

Walmsley, Alena; Vachová, Pavla; Vach, Marek

2016-04-01

This research was investigating whether topographic features, which determine soil nutrient and moisture distribution, in combination with soil fauna (wireworm and earthworm) presence, affect plant community composition at a spontaneously revegetated post mining area with an undulating surface. Two sites of different age with 3 types of topographic features were selected, soil moisture and nutrient content were measured, plant community composition and soil macrofauna community was sampled at each position. Wireworms were present at all positions and were most abundant at bottoms of waves at the younger site; their presence was correlated with several plant species, but the direction of the interaction isn't clear. Earthworms were only present at the older site and had highest abundance at flat sections. Earthworm presence affected the amount of nitrogen in soil - the most nitrogen content was at the site with highest earthworm density and was followed by higher diversity of plant community. The plant community composition was generally correlated with plant available nutrient content - especially P and N. We infer that topographic features affect nutrient and soil fauna distribution, which consequently influences plant community composition.

Consideration of species community composition in statistical ...

EPA Pesticide Factsheets

Diseases are increasing in marine ecosystems, and these increases have been attributed to a number of environmental factors including climate change, pollution, and overfishing. However, many studies pool disease prevalence into taxonomic groups, disregarding host species composition when comparing sites or assessing environmental impacts on patterns of disease presence. We used simulated data under a known environmental effect to assess the ability of standard statistical methods (binomial and linear regression, ANOVA) to detect a significant environmental effect on pooled disease prevalence with varying species abundance distributions and relative susceptibilities to disease. When one species was more susceptible to a disease and both species only partially overlapped in their distributions, models tended to produce a greater number of false positives (Type I error). Differences in disease risk between regions or along an environmental gradient tended to be underestimated, or even in the wrong direction, when highly susceptible taxa had reduced abundances in impacted sites, a situation likely to be common in nature. Including relative abundance as an additional variable in regressions improved model accuracy, but tended to be conservative, producing more false negatives (Type II error) when species abundance was strongly correlated with the environmental effect. Investigators should be cautious of underlying assumptions of species similarity in susceptib

Long-term changes in the planktonic cnidarian community in a mesoscale area of the NW Mediterranean

PubMed Central

Gili, Josep-Maria; Grinyó, Jordi; Raya, Vanesa; Sabatés, Ana

2018-01-01

In the present work, possible long-term changes in the planktonic cnidarian community were investigated by analyzing (1) species and community spatial distribution patterns, (2) variations in abundance and (3) changes in species richness during three mesoscale surveys representative of the climatic and anthropogenic changes that have occurred during the last three decades (years: 1983, 2004 and 2011) in the NW Mediterranean. These surveys were conducted during the summer (June) along the Catalan coast. All surveys covered the same area, used the same sampling methodology, and taxonomic identification was conducted by the same team of experts. An increase in the abundance of total cnidaria was found from 1983 to 2011. The siphonophore Muggiaea atlantica and the hydromedusa Aglaura hemistoma were the most abundant species, while Muggiaea kochii presented the largest abundance increment over time. Temperature was the main environmental parameter driving significant differences in the cnidarian community composition, abundance and spatial distribution patterns among the surveys. Our results suggest that in the current climate change scenario, warm-water species abundances will be positively favored, and the community will suffer changes in their latitudinal distribution patterns. We consider it extremely important to study and monitor gelatinous zooplankton in mesoscale spatial areas to understand not only long-term changes in abundances but also changes in their spatial distributions since spatial changes are sensitive indicators of climate change. PMID:29715282

Marine litter abundance and distribution on beaches on the Isle of Rügen considering the influence of exposition, morphology and recreational activities.

PubMed

Hengstmann, Elena; Gräwe, Dennis; Tamminga, Matthias; Fischer, Elke Kerstin

2017-02-15

The abundance, weight and composition of marine debris were determined at the northwest coast of the Isle of Rügen in 2015. A total number of 1115 macrolitter items were registered, resulting in an abundance of 304±88.96 items per 100m of beach length and therefore being greater than the abundances found for other beaches at the Baltic Sea. Macrolitter items were predominantly composed of plastic, on average 83%. The four beaches under investigation have different exposition as well as touristic levels. The differing influence of wind and water currents as well as recreational activities on the macrolitter at these beaches was detectable. The distribution of items within a beach segment was analyzed by implementing D-GPS and drone aerial photography. The results of this analysis suggested that the identity of the substrate as well as the presence of vegetation are both major influencing factors in the macrolitter distribution. Copyright © 2016 Elsevier Ltd. All rights reserved.

Distribution and food habits of young-of-the-year fishes in a backwater lake of the upper Mississippi River

USGS Publications Warehouse

Holland, L.E.; Huston, M.L.

1985-01-01

The distribution patterns and food habits of young-of-the-year (YOY) fishes in a lentic area adjacent to the main channel of Pool 7 of the upper Mississippi River were studied. Habitats sampled grouped distinctly based on percent composition and abundance of YOY fishes with those having submergent vegetation dominated by a number of important sport species. In late spring, the grouping of stations depended on the presence or absence of newly transformed northern pike (Esox lucius). In early summer, stations did not differ as distinctly in composition, but in total abundance of young. Those stations with submergent vegetation had total catches which were more than double those elsewhere. By late summer, submergent and mixed vegetation stations formed a distinct assemblage influenced by the preponderance of three species of sunfishes. (DBO).

Bulk chemical compositions of Antarctic meteorites in the NIPR collection

NASA Astrophysics Data System (ADS)

Kimura, M.; Imae, N.; Yamaguchi, A.; Haramura, H.; Kojima, H.

2018-03-01

Bulk chemical compositions of meteorites were traditionally analyzed by wet chemical analysis, and NIPR has data for 1162 meteorites as of September 2017. We discuss the classification of meteorites on the basis of these data. Chondrite data are distributed in an anomalously wide range of compositions on the Urey-Craig diagram. One of the reasons for such wide distribution is terrestrial weathering producing Fe2O3-bearing phases from Fe-Ni metal and sulfides. Another important factor affecting the bulk compositional data is brecciation. Our observations indicate that many brecciated chondrites contain anomalously abundant opaque minerals, or are depleted in them, resulting in unusual compositions. In case of enstatite and some carbonaceous chondrites, the bulk compositions are distributed in wider ranges than reported before. The bulk compositions of HED meteorites are consistent with their mineralogy and classification. Our study suggests that wet chemical data are still significant for the meteorite classification. However, petrographic observation is indispensable for evaluating the bulk chemistry and classification of meteorites.

Meteoritic Amino Acids: Diversity in Compositions Reflects Parent Body Histories

NASA Technical Reports Server (NTRS)

Elsila, Jamie E.; Aponte, Jose C.; Blackmond, Donna G.; Burton, Aaron S.; Dworkin, Jason P.; Glavin, Daniel P.

2016-01-01

The analysis of amino acids in meteorites dates back over 50 years; however, it is only in recent years that research has expanded beyond investigations of a narrow set of meteorite groups (exemplied by the Murchison meteorite) into meteorites of other types and classes. These new studies have shown a wide diversity in the abundance and distribution of amino acids across carbonaceous chondrite groups, highlighting the role of parent body processes and composition in the creation, preservation, or alteration of amino acids. Although most chiral amino acids are racemic in meteorites, the enantiomeric distribution of some amino acids, particularly of the nonprotein amino acid isovaline, has also been shown to vary both within certain meteorites and across carbonaceous meteorite groups. Large -enantiomeric excesses of some extraterrestrial protein amino acids (up to 60) have also been observed in rare cases and point to nonbiological enantiomeric enrichment processes prior to the emergence of life. In this Outlook, we review these recent meteoritic analyses, focusing on variations in abundance, structural distributions, and enantiomeric distributions of amino acids and discussing possible explanations for these observations and the potential for future work.

Opposing resonses to ecological gradients structure amphibian and reptile communities across a temperate grassland-savanna-forest landscape

USGS Publications Warehouse

Grundel, Ralph; Beamer, David; Glowacki, Gary A.; Frohnapple, Krystal; Pavlovic, Noel B.

2014-01-01

Temperate savannas are threatened across the globe. If we prioritize savanna restoration, we should ask how savanna animal communities differ from communities in related open habitats and forests. We documented distribution of amphibian and reptile species across an open-savanna–forest gradient in the Midwest U.S. to determine how fire history and habitat structure affected herpetofaunal community composition. The transition from open habitats to forests was a transition from higher reptile abundance to higher amphibian abundance and the intermediate savanna landscape supported the most species overall. These differences warn against assuming that amphibian and reptile communities will have similar ecological responses to habitat structure. Richness and abundance also often responded in opposite directions to some habitat characteristics, such as cover of bare ground or litter. Herpetofaunal community species composition changed along a fire gradient from infrequent and recent fires to frequent but less recent fires. Nearby (200-m) wetland cover was relatively unimportant in predicting overall herpetofaunal community composition while fire history and fire-related canopy and ground cover were more important predictors of composition, diversity, and abundance. Increased developed cover was negatively related to richness and abundance. This indicates the importance of fire history and fire related landscape characteristics, and the negative effects of development, in shaping the upland herpetofaunal community along the native grassland–forest continuum.

A century later: Long-term change of an inshore temperate marine fish assemblage

NASA Astrophysics Data System (ADS)

McHugh, Matthew; Sims, David W.; Partridge, Julian C.; Genner, Martin J.

2011-02-01

There is compelling evidence that European marine fish assemblages have undergone extensive changes in composition over the last century. However, our knowledge of which species have changed in abundance and body size distributions, and the reasons for these changes, is limited due to a paucity of historical data. Here we report a study of long-term change in a marine fish assemblage from the inshore waters of the Western English Channel, near Plymouth. We compiled data from historic trawls undertaken between 1913 and 1922, and resurveyed those sites in 2008 and 2009. Our results revealed highly significant temporal differences in assemblage composition, but the scale of change was not consistent among taxonomic groups. Dramatic changes were recorded within the elasmobranchs, characterised by a reduction in abundance of all skate (Rajiidae) species, apparent extirpation of the angel shark ( Squatina squatina), and large increases in the abundance of lesser-spotted catshark ( Scyliorhinus canicula). By contrast we observed less evidence of change among 'flatfishes' (Pleuronectiformes) or 'roundfishes' (other teleosts). Changes were also observed in length-frequency distributions, with a significant decline in the size distribution of elasmobranchs (excluding S. canicula), but no significant change in size distributions of either group of teleosts. These data provide further evidence that larger, slow-maturing species have undergone declines in UK waters over the last century, and form useful benchmarks for assessment of future changes in this coastal faunal assemblage.

[Distribution and changes in species composition and abundance of ichthyoplankton in the Yangtze estuary].

PubMed

Zhang, Heng; Yang, Sheng-Long; Meng, Hai-Xing

2012-06-01

Based on four surveys of eggs and larvae in the Yangtze estuary in 2005 (April and November) and 2006 (April and September), combined with the historical data of the wetland in 1990 (September) and 1991 (March), we analyzed seasonal changes in fish species composition and quantity of ichthyoplankton. Thirty-six species of egg and larvae were collected and marine fish species were the highest represented ecological guild. Average fish species and average abundance in spring were lower than in autumn for every survey. The total number of eggs in brackish water was higher than in fresh water, but the total number of larvae and juveniles in brackish water was lower. The abundance of eggs and larvae during from 2005 to 2006 in both spring and autumn was higher compared to those from 1990 to 1991. Obvious differences in species composition in September between 1990 and 2006 were found, especially for Erythroculter ilishaeformis and Neosalanx taihuensis. Fish species composition and quantity within the ichthyoplankton community has obviously changed in the Yangtze estuary over the last 20 years.

The Energetic Particles Acceleration, Composition, and Transport (EPACT) experiment on the ISTP/wind spacecraft

NASA Technical Reports Server (NTRS)

Reames, D. V.; Von Rosenvinge, T. T.; Ramaty, R.; Mason, G. M.; Hamilton, D. C.; Forman, M. A.; Webber, W. R.

1990-01-01

The EPACT experiment will measure abundances, spectra, and angular distributions of particles from 20 keV/amu to 500 MeV/amu. At high energies, isotopes will be resolved up through Z = 26, at intermediate energies elements with Z between 1 and 82 will be observed, and at low energies element abundances above Z = 2 will be resolved for the first time.

The post-larval and juvenile fish assemblage in the Sukhothai floodplain, Thailand

NASA Astrophysics Data System (ADS)

Siriwan, Suksri; Boonsatien, Boonsoong

2017-06-01

This study investigated abundance, species composition and spatial and temporal distributions of fish larvae and their relationship with some environmental variables in the Sukhothai floodplain in northern Thailand. Fish larvae were collected from 33 sampling stations on 8 occasions between August 2010 and October 2013. The study collected and identified 149 296 individuals, representing 32 families and 165 taxa. The species composition of larval fish was dominated by the Cyprinidae (47.27%), Cobitidae (7.88%), Siluridae (6.67%), Bagridae (6.06%) and Mastacembelidae (3.33%) families. The most-abundant larval species were the Striped flying barb Esomus metallicus (16.90%), the Siamese mud carp Henicorhynchus siamensis (8.48%) and the Sumatran river sprat Clupeichthys goniognathus (8.31%). The greatest abundance and species diversity of larvae were found when the river flow runs onto the floodplain. PCA and nMDS analysis revealed that the samples plot is associated with temporal distribution among years. The discharge was a major factor determining fish larvae assemblage and environmental variables in the Sukhothai floodplain. Four fish larval species were positively correlated with the samples for 2013. The result of the CCA ordination plot showed that only the discharge variable was strongly correlated with fish larvae abundance, especially two cyprinid Rasbora species.

Spatial distribution and vertical migrations of fish larvae communities off Northwestern Iberia sampled with LHPR and Bongo nets

NASA Astrophysics Data System (ADS)

Garrido, Susana; Santos, A. Miguel P.; dos Santos, Antonina; Ré, Pedro

2009-10-01

The spatial distribution and diel vertical migration of fish larvae were studied in relation to the environmental conditions off NW Iberia during May 2002. Larvae from 23 families were identified, the most abundant were the Clupeidae, Gobiidae, Callionymidae, Blenniidae, Sparidae and Labridae. Sardina pilchardus was the most abundant species, mean concentrations 1 order of magnitude higher than the other fish larvae species. Larval horizontal distribution was mainly related to upwelling-driven circulation, resulting in an offshore increase of larval abundance while the vertical distribution was closely associated to the Western Iberia Buoyant Plume. Despite this general trend, taxon-specific relationships between the distribution of larvae and environmental variables were observed, and temperature was an important regressor explaining the distribution of most taxa. A comparison between ichthyoplankton samples collected alternatively with the LHPR and Bongo nets resulted in captures of larvae ≈1 order of magnitude higher for the LHPR, probably related to its higher towing speed. The spatial distribution and relative composition of larvae were also different for both nets, although the most frequent/abundant groups were the same. A fixed station sampled for 69-h showed diel vertical migrations performed by the larvae, with the highest larval concentrations occurring at surface layers during the night and most larvae being found in the neuston layer only during that period.

Comparison of the mineral composition of the sediment found in two Mars dunefields: Ogygis Undae and Gale crater - three distinct endmembers identified

NASA Astrophysics Data System (ADS)

Charles, Heather; Titus, Timothy; Hayward, Rosalyn; Edwards, Christopher; Ahrens, Caitlin

2017-01-01

The composition of two dune fields, Ogygis Undae and the NE-SW trending dune field in Gale crater (the "Bagnold Dune Field" and "Western Dune Field"), were analyzed using thermal emission spectra from the Mars Global Surveyor (MGS) Thermal Emission Spectrometer (TES) and the Mars Odyssey Thermal Emission Imaging System (THEMIS). The Gale crater dune field was used as a baseline as other orbital compositional analyses have been conducted, and in situ sampling results will soon be available. Results from unmixing thermal emission spectra showed a spatial variation between feldspar mineral abundances and pyroxene mineral abundances in Ogygis Undae. Other datasets, including nighttime thermal inertia values, also showed variation throughout the dune field. One explanation proposed for this variation is a bimodal distribution of two sand populations. This distribution is seen in some terrestrial dune fields. The two dune fields varied in both mineral types present and in uniformity of composition. These differences point to different source lithologies and different distances travelled from source material. Examining these differences further will allow for a greater understanding of aeolian processes on Mars.

Comparison of the mineral composition of the sediment found in two Mars dunefields: Ogygis Undae and Gale crater – three distinct endmembers identified

USGS Publications Warehouse

Charles, Heather; Titus, Timothy N.; Hayward, Rosalyn; Edwards, Christopher; Ahrens, Caitlin

2016-01-01

The composition of two dune fields, Ogygis Undae and the NE–SW trending dune field in Gale crater (the “Bagnold Dune Field” and “Western Dune Field”), were analyzed using thermal emission spectra from the Mars Global Surveyor (MGS) Thermal Emission Spectrometer (TES) and the Mars Odyssey Thermal Emission Imaging System (THEMIS). The Gale crater dune field was used as a baseline as other orbital compositional analyses have been conducted, and in situ sampling results will soon be available.Results from unmixing thermal emission spectra showed a spatial variation between feldspar mineral abundances and pyroxene mineral abundances in Ogygis Undae. Other datasets, including nighttime thermal inertia values, also showed variation throughout the dune field. One explanation proposed for this variation is a bimodal distribution of two sand populations. This distribution is seen in some terrestrial dune fields.The two dune fields varied in both mineral types present and in uniformity of composition. These differences point to different source lithologies and different distances travelled from source material. Examining these differences further will allow for a greater understanding of aeolian processes on Mars.

Monitoring fish distributions along electrofishing segments

USGS Publications Warehouse

Miranda, Leandro E.

2014-01-01

Electrofishing is widely used to monitor fish species composition and relative abundance in streams and lakes. According to standard protocols, multiple segments are selected in a body of water to monitor population relative abundance as the ratio of total catch to total sampling effort. The standard protocol provides an assessment of fish distribution at a macrohabitat scale among segments, but not within segments. An ancillary protocol was developed for assessing fish distribution at a finer scale within electrofishing segments. The ancillary protocol was used to estimate spacing, dispersion, and association of two species along shore segments in two local reservoirs. The added information provided by the ancillary protocol may be useful for assessing fish distribution relative to fish of the same species, to fish of different species, and to environmental or habitat characteristics.

Intra-annual seasonal variability of surface zooplankton distribution patterns along a 110°E transect of the Southern Ocean in the austral summer of 2011/12

NASA Astrophysics Data System (ADS)

Takahashi, Kunio T.; Hosie, Graham W.; Odate, Tsuneo

2017-06-01

Seasonal cycles can provide insight into the interactions between zooplankton and the environment. However, few intra-annual seasonal studies have been undertaken in the Southern Ocean. We investigated the composition, distribution, and abundance of micro- and meso-zooplankton along the 110°E meridian with three transects in December 2011, January and March 2012 using a Continuous Plankton Recorder. High zooplankton abundance was recorded in the Polar Frontal Zone (PFZ) and the Antarctic Zone (AZ) in both day and night at all transects with 179.0-300.9 ind. m-3. The small copepods Oithona similis, Ctenocalanus citer, and copepodites indet (copepod indeterminable) were dominant in the PFZ and AZ communities. Total zooplankton abundance was comparatively consistent among transects. Nighttime abundance levels remained high in the AZ in March with high abundance of copepodites indet. This seasonal fluctuation appeared to be influenced by recruitment of new populations. Most core species/taxa, except for O. similis, C. citer, and foraminiferans in the AZ area in early January, exhibited a diel decrease in abundance. A multi-ship intra-annual seasonal survey will help detect their various regional and/or seasonal distribution patterns, and the impacts of environmental change on Southern Ocean pelagic ecosystems.

Ionosphere of Venus - First observations of day-night variations of the ion composition

NASA Technical Reports Server (NTRS)

Taylor, H. A., Jr.; Brinton, H. C.; Bauer, S. J.; Hartle, R. E.; Cloutier, P. A.; Daniell, R. E., Jr.; Donahue, T. M.

1979-01-01

Preliminary observations of day-night variations in the ion composition of the ionosphere of Venus, obtained by the Pioneer Venus Orbiter ion mass spectrometer experiment, are reported. A remarkable abundance and extent of ionization in the deep regions of the nightside ionosphere was observed, in spite of the long Venus night. A comparison of dayside and nightside ion distributions reveals a nightside composition similar in several respects to that of the dayside, with the ions O(+) and O2(+) forming the nightside F 2 and F 1 regions, respectively, as in the dayside. Important differences include a greater abundance of low-latitude ionization in the nightside, a significant increase of H(+) and NO(+) ions with increasing solar zenith angle, and extreme dynamic variability of the nightside region above 160 km. Ion composition data support the view that the nightside ionosphere can be maintained by the transport of ionization from the dayside.

Amphibian Diversity and Threatened Species in a Severely Transformed Neotropical Region in Mexico

PubMed Central

Meza-Parral, Yocoyani; Pineda, Eduardo

2015-01-01

Many regions around the world concentrate a large number of highly endangered species that have very restricted distributions. The mountainous region of central Veracruz, Mexico, is considered a priority area for amphibian conservation because of its high level of endemism and the number of threatened species. The original tropical montane cloud forest in the region has been dramatically reduced and fragmented and is now mainly confined to ravines and hillsides. We evaluated the current situation of amphibian diversity in the cloud forest fragments of this region by analyzing species richness and abundance, comparing assemblage structure and species composition, examining the distribution and abundance of threatened species, and identifying the local and landscape variables associated with the observed amphibian diversity. From June to October 2012 we sampled ten forest fragments, investing 944 person-hours of sampling effort. A total of 895 amphibians belonging to 16 species were recorded. Notable differences in species richness, abundance, and assemblage structure between forest fragments were observed. Species composition between pairs of fragments differed by an average of 53%, with the majority (58%) resulting from species replacement and the rest (42%) explained by differences in species richness. Half of the species detected are under threat of extinction according to the International Union for Conservation of Nature, and although their distribution and abundance varied markedly, there were also ubiquitous and abundant species, along with rare species of restricted distribution. The evident heterogeneity of the ten study sites indicates that to conserve amphibians in a mountainous region such as this one it is necessary to protect groups of fragments which represent the variability of the system. Both individually and together cloud forest fragments are very important to conservation because each remnant is inhabited by several threatened species, some of them at imminent risk of extinction. PMID:25799369

Microzooplankton biomass distribution in Terra Nova Bay, Ross Sea (Antarctica)

NASA Astrophysics Data System (ADS)

Fonda Umani, S.; Monti, M.; Nuccio, C.

1998-11-01

This work describes the spatial and vertical distribution of microzooplankton (20-200 μm) abundance and biomass of the upper layers (0-100 m), collected during the first oceanographic Italian expedition in Antarctica (1987/1988) in Terra Nova Bay (Ross Sea). Biomass was estimated by using biovolume calculations and literature conversion factors. Sampling was carried out at three depths, surface, 50 and 100 m. The dominant taxa were made up of tintinnid ciliates, ciliates other than tintinnids, larvae of micrometazoa and heterotrophic dinoflagellates. The abundance of the total microplankton fraction had its absolute maximum in the center of Terra Nova Bay at the surface with 31 042 ind. dm -3. The areal and vertical distribution of heterotrophic microplankton biomass differs from that of abundance. On the basis of hydrological conditions, phytoplankton composition and biomass and microzooplankton biomass and structure it is possible to identify three groups of stations: 1—northern coastal stations (intermediate chlorophyll maxima, microphytoplankton prevalence, low microzooplankton biomass); 2—central stations (high surface chlorophyll, nanoplankton prevalence, high abundance of microzooplankton); 3—northern stations (deeper pycnocline, nanoplankton prevalence, high microzooplankton biomass at intermediate depths).

Seasonal Blowfly Distribution and Abundance in Fragmented Landscapes. Is It Useful in Forensic Inference about Where a Corpse Has Been Decaying?

PubMed Central

Zabala, Jabi; Díaz, Beatriz; Saloña-Bordas, Marta I.

2014-01-01

Blowflies are insects of forensic interest as they may indicate characteristics of the environment where a body has been laying prior to the discovery. In order to estimate changes in community related to landscape and to assess if blowfly species can be used as indicators of the landscape where a corpse has been decaying, we studied the blowfly community and how it is affected by landscape in a 7,000 km2 region during a whole year. Using baited traps deployed monthly we collected 28,507 individuals of 10 calliphorid species, 7 of them well represented and distributed in the study area. Multiple Analysis of Variance found changes in abundance between seasons in the 7 analyzed species, and changes related to land use in 4 of them (Calliphora vomitoria, Lucilia ampullacea, L. caesar and L. illustris). Generalised Linear Model analyses of abundance of these species compared with landscape descriptors at different scales found only a clear significant relationship between summer abundance of C. vomitoria and distance to urban areas and degree of urbanisation. This relationship explained more deviance when considering the landscape composition at larger geographical scales (up to 2,500 m around sampling site). For the other species, no clear relationship between land uses and abundance was found, and therefore observed changes in their abundance patterns could be the result of other variables, probably small changes in temperature. Our results suggest that blowfly community composition cannot be used to infer in what kind of landscape a corpse has decayed, at least in highly fragmented habitats, the only exception being the summer abundance of C. vomitoria. PMID:24918607

Patterns of Diversity and Abundance of Carrion Insect Assemblages in the Natural Park “Hoces del Río Riaza” (Central Spain)

PubMed Central

Baz, Arturo; Cifrián, Blanca; Martín-Vega, Daniel

2014-01-01

Abstract The patterns of diversity and abundance of the carrion insect species in the different habitats of the Natural Park “Hoces del Río Riaza” (central Spain) were studied with the use of carrion-baited traps. Representativeness of the inventories was assessed with the calculation of randomized species richness curves and nonparametric estimators. Coleoptera families, Silphidae and Dermestidae, and Diptera families, Calliphoridae and Muscidae, were dominant in every sampling habitat, but differences in the patterns of diversity and abundance were found. Lusitanian oakwood and riparian forest were the most diverse habitats with high abundance of saprophagous species, whereas more open (i.e., exposed to continuous sunlight during the day) habitats showed lower diversity values and a different species composition and distribution of species abundance, favoring thermophilous species and necrophagous species with high tolerance to different environmental conditions. Differences in the bioclimatical features of the sampled habitats are suggested to explain the composition and diversity of the carrion insect assemblages in different environments. PMID:25368080

An Analysis of Thaumarchaeota Populations from the Northern Gulf of Mexico

PubMed Central

Tolar, Bradley B.; King, Gary M.; Hollibaugh, James T.

2013-01-01

We sampled Thaumarchaeota populations in the northern Gulf of Mexico, including shelf waters under the Mississippi River outflow plume that are subject to recurrent hypoxia. Data from this study allowed us to: (1) test the hypothesis that Thaumarchaeota would be abundant in this region; (2) assess phylogenetic composition of these populations for comparison with other regions; (3) compare the efficacy of quantitative PCR (qPCR) based on primers for 16S rRNA genes (rrs) with primers for genes in the ammonia oxidation (amoA) and carbon fixation (accA, hcd) pathways; (4) compare distributions obtained by qPCR with the relative abundance of Thaumarchaeota rrs in pyrosequenced libraries; (5) compare Thaumarchaeota distributions with environmental variables to help us elucidate the factors responsible for the distributions; (6) compare the distribution of Thaumarchaeota with Nitrite-Oxidizing Bacteria (NOB) to gain insight into the coupling between ammonia and nitrite oxidation. We found up to 108 copies L−1 of Thaumarchaeota rrs in our samples (up to 40% of prokaryotes) by qPCR, with maximum abundance in slope waters at 200–800 m. Thaumarchaeota rrs were also abundant in pyrosequenced libraries and their relative abundance correlated well with values determined by qPCR (r2 = 0.82). Thaumarchaeota populations were strongly stratified by depth. Canonical correspondence analysis using a suite of environmental variables explained 92% of the variance in qPCR-estimated gene abundances. Thaumarchaeota rrs abundance was correlated with salinity and depth, while accA abundance correlated with fluorescence and pH. Correlations of Archaeal amoA abundance with environmental variables were primer-dependent, suggesting differential responses of sub-populations to environmental variables. Bacterial amoA was at the limit of qPCR detection in most samples. NOB and Euryarchaeota rrs were found in the pyrosequenced libraries; NOB distribution was correlated with that of Thaumarchaeota (r2 = 0.49). PMID:23577005

Ecological drivers and habitat associations of estuarine bivalves

PubMed Central

Tunberg, Björn G.; Johnston, Cora A.; Barshis, Daniel J.

2015-01-01

Community composition of the infaunal bivalve fauna of the St. Lucie Estuary and southern Indian River Lagoon, eastern Florida was sampled quarterly for 10 years as part of a long-term benthic monitoring program. A total of 38,514 bivalves of 137 taxa were collected and identified. We utilized this data, along with sediment samples and environmental measurements gathered concurrently, to assess the community composition, distribution, and ecological drivers of the infaunal bivalves of this estuary system. Salinity had the strongest influence on bivalve assemblage across the 15 sites, superseding the influences of sediment type, water turbidity, temperature and other environmental parameters. The greatest diversity was found in higher salinity euhaline sites, while the greatest abundance of individual bivalves was found in medium salinity mixohaline sites, the lowest diversity and abundances were found in the low salinity oligohaline sites, demonstrating a strong positive association between salinity and diversity/abundance. Water management decisions for the estuary should incorporate understanding of the role of salinity on bivalve diversity, abundance, and ecosystem function. PMID:26587338

Ecological drivers and habitat associations of estuarine bivalves.

PubMed

McKeon, C Seabird; Tunberg, Björn G; Johnston, Cora A; Barshis, Daniel J

2015-01-01

Community composition of the infaunal bivalve fauna of the St. Lucie Estuary and southern Indian River Lagoon, eastern Florida was sampled quarterly for 10 years as part of a long-term benthic monitoring program. A total of 38,514 bivalves of 137 taxa were collected and identified. We utilized this data, along with sediment samples and environmental measurements gathered concurrently, to assess the community composition, distribution, and ecological drivers of the infaunal bivalves of this estuary system. Salinity had the strongest influence on bivalve assemblage across the 15 sites, superseding the influences of sediment type, water turbidity, temperature and other environmental parameters. The greatest diversity was found in higher salinity euhaline sites, while the greatest abundance of individual bivalves was found in medium salinity mixohaline sites, the lowest diversity and abundances were found in the low salinity oligohaline sites, demonstrating a strong positive association between salinity and diversity/abundance. Water management decisions for the estuary should incorporate understanding of the role of salinity on bivalve diversity, abundance, and ecosystem function.

Bacterial water quality and network hydraulic characteristics: a field study of a small, looped water distribution system using culture-independent molecular methods.

PubMed

Sekar, R; Deines, P; Machell, J; Osborn, A M; Biggs, C A; Boxall, J B

2012-06-01

To determine the spatial and temporal variability in the abundance, structure and composition of planktonic bacterial assemblages sampled from a small, looped water distribution system and to interpret results with respect to hydraulic conditions. Water samples were collected from five sampling points, twice a day at 06:00 h and 09:00 h on a Monday (following low weekend demand) and a Wednesday (higher midweek demand). All samples were fully compliant with current regulated parameter standards. This study did not show obvious changes in bacterial abundance (DAPI count) or community structure Denaturing gradient gel electrophoresis analysis with respect to sample site and hence to water age; however, the study did show temporal variability with respect to both sampling day and sample times. Data suggests that variations in the bacterial assemblages may be associated with the local system hydraulics: the bacterial composition and numbers, over short durations, are governed by the interaction of the bulk water and the biofilm influenced by the hydraulic conditions. This study demonstrates general stability in bacterial abundance, community structure and composition within the system studied. Trends and patterns supporting the transfer of idealized understanding to the real world were evident. Ultimately, such work will help to safeguard potable water quality, fundamental to public health. © 2012 The Authors. Journal of Applied Microbiology © 2012 The Society for Applied Microbiology.

Gas-Grain Chemical Models: Inclusion of a Grain Size Distribution and a Study Of Young Stellar Objects in the Magellanic Clouds

NASA Astrophysics Data System (ADS)

Pauly, Tyler Andrew

2017-06-01

Computational models of interstellar gas-grain chemistry have aided in our understanding of star-forming regions. Chemical kinetics models rely on a network of chemical reactions and a set of physical conditions in which atomic and molecular species are allowed to form and react. We replace the canonical single grain-size in our chemical model MAGICKAL with a grain size distribution and analyze the effects on the chemical composition of the gas and grain surface in quiescent and collapsing dark cloud models. We find that a grain size distribution coupled with a temperature distribution across grain sizes can significantly affect the bulk ice composition when dust temperatures fall near critical values related to the surface binding energies of common interstellar chemical species. We then apply the updated model to a study of ice formation in the cold envelopes surrounding massive young stellar objects in the Magellanic Clouds. The Magellanic Clouds are local satellite galaxies of the Milky Way, and they provide nearby environments to study star formation at low metallicity. We expand the model calculation of dust temperature to include a treatment for increased interstellar radiation field intensity; we vary the radiation field to model the elevated dust temperatures observed in the Magellanic Clouds. We also adjust the initial elemental abundances used in the model, guided by observations of Magellanic Cloud HII regions. We are able to reproduce the relative ice fractions observed, indicating that metal depletion and elevated grain temperature are important drivers of the envelope ice composition. The observed shortfall in CO in Small Magellanic Cloud sources can be explained by a combination of reduced carbon abundance and increased grain temperatures. The models indicate that a large variation in radiation field strength is required to match the range of observed LMC abundances. CH 3OH abundance is found to be enhanced (relative to total carbon abundance) in low-metallicity models, providing seed material for complex organic molecule formation. We conclude with a preliminary study of the recently discovered hot core in the Large Magellanic Cloud; we create a grid of models to simulate hot core formation in Magellanic Cloud environments, comparing them to models and observations of well-characterized galactic counterparts.

Meteoritic Amino Acids: Diversity in Compositions Reflects Parent Body Histories

PubMed Central

2016-01-01

The analysis of amino acids in meteorites dates back over 50 years; however, it is only in recent years that research has expanded beyond investigations of a narrow set of meteorite groups (exemplified by the Murchison meteorite) into meteorites of other types and classes. These new studies have shown a wide diversity in the abundance and distribution of amino acids across carbonaceous chondrite groups, highlighting the role of parent body processes and composition in the creation, preservation, or alteration of amino acids. Although most chiral amino acids are racemic in meteorites, the enantiomeric distribution of some amino acids, particularly of the nonprotein amino acid isovaline, has also been shown to vary both within certain meteorites and across carbonaceous meteorite groups. Large l-enantiomeric excesses of some extraterrestrial protein amino acids (up to ∼60%) have also been observed in rare cases and point to nonbiological enantiomeric enrichment processes prior to the emergence of life. In this Outlook, we review these recent meteoritic analyses, focusing on variations in abundance, structural distributions, and enantiomeric distributions of amino acids and discussing possible explanations for these observations and the potential for future work. PMID:27413780

The petrogenesis of L-6 chondrites - Insights from the chemistry of minerals

NASA Technical Reports Server (NTRS)

Curtis, D. B.; Schmitt, R. A.

1979-01-01

Measurements of the major, minor and trace element abundances of the major minerals of the L-6 chondrites Alfianello, Colby (WI) and Leedey are used to investigate the formation mechanisms of L-6 chondrites. Electron microprobe analysis was performed on individual grains of each mineral, and separated minerals were analyzed by instrumental and radiochemical neutron activation analysis. The compositions of the three meteorites are observed to be generally uniform, however different abundances and distributions of rare earth elements and Co and Ni indicate that the meteorites have different petrogenetic histories. Alkali element distributions are found to be incompatible with internal equilibration of a closed system.

Distribution of net-collected planktonic cnidarians along the northern Mid-Atlantic Ridge and their associations with the main water masses

NASA Astrophysics Data System (ADS)

Hosia, A.; Stemmann, L.; Youngbluth, M.

2008-01-01

Planktonic cnidarians and ctenophores were sampled with a multiple opening-closing net (Multinet) as well as a non-quantitative plankton net along the northern Mid-Atlantic Ridge (MAR) between Iceland and the Azores. Sixty-four species or genera of planktonic cnidarians (38 siphonophora, 21 hydromedusae, 5 scyphomedusae) and one genus of ctenophore were collected. Of these, Leuckartiara adnata and Clausophyes laetmata were new records for the area. Multinet samples collected from depths of 0-100, 100-500, 500-1000, 1000-1500 and 1500-2500 m at 11 stations were compared. Multivariate analysis of the data indicated that species composition and abundance along the ridge varied with the dominant water masses, with changes in the cnidarian zooplankton assemblage observed with regard to geographic location as well as depth. The surface waters of the two northernmost stations characterized by modified North Atlantic Water (MNAW) as well as the three southernmost stations characterized by North Atlantic Central Water (NACW) exhibited relatively high abundances (3284-13,915 individuals·1000 m -3) in the upper 100 m. No such peak was evident at the middle stations characterized by Subarctic Intermediate Water (SAIW), where the abundances in the upper three depth strata were consistently lower (57-863 individuals·1000 m -3). Across the study area, the lowest abundances were found in the 1500-2500 m stratum (0-56 ind.·1000 m -3). The main divergence in the species composition and abundance of planktonic cnidarians was observed at the Subpolar Front (SPF), which marked the boundary for the distribution of many species. The divergence at the SPF was strongest in the upper 500 m but observable down to 1500 m. Profoundly different epipelagic species assemblages were observed in SAIW and NACW on opposite sides of the SPF, with the distribution of several species of calycophoran siphonophores confined to the southern NACW. At mid-water depths, the species composition north of the SPF was possibly influenced by Labrador Sea Water (LSW). The highest diversity of planktonic cnidarians was observed in the surface waters south of the SPF and in the 100-1000 m range north of the SPF.

Controls of picophytoplankton abundance and composition in a highly dynamic marine system, the Northern Alboran Sea (Western Mediterranean)

NASA Astrophysics Data System (ADS)

Amorim, Ana L.; León, Pablo; Mercado, Jesús M.; Cortés, Dolores; Gómez, Francisco; Putzeys, Sebastien; Salles, Soluna; Yebra, Lidia

2016-06-01

The Alboran Sea is a highly dynamic basin which exhibits a high spatio-temporal variability of hydrographic structures (e.g. fronts, gyres, coastal upwellings). This work compares the abundance and composition of picophytoplankton observed across the northern Alboran Sea among eleven cruises between 2008 and 2012 using flow cytometry. We evaluate the seasonal and longitudinal variability of picophytoplankton on the basis of the circulation regimes at a regional scale and explore the presence of cyanobacteria ecotypes in the basin. The maximal abundances obtained for Prochlorococcus, Synechococcus and picoeukaryotes (12.7 × 104, 13.9 × 104 and 8.6 × 104 cells mL- 1 respectively) were consistent with those reported for other adjacent marine areas. Seasonal changes in the abundance of the three picophytoplankton groups were highly significant although they did not match the patterns described for other coastal waters. Higher abundances of Prochlorococcus were obtained in autumn-winter while Synechococcus and picoeukaryotes exhibited a different seasonal abundance pattern depending on the sector (e.g. Synechococcus showed higher abundance in summer in the west sector and during winter in the eastern study area). Additionally, conspicuous longitudinal gradients were observed for Prochlorococcus and Synechococcus, with Prochlorococcus decreasing from west to east and Synechococcus following the opposite pattern. The analysis of environmental variables (i.e. temperature, salinity and inorganic nutrients) and cell abundances indicates that Prochlorococcus preferred high salinity and nitrate to phosphate ratio. On the contrary, temperature did not seem to play a role in Prochlorococcus distribution as it was numerically important during the whole seasonal cycle. Variability in Synechococcus abundance could not be explained by changes in any environmental variable suggesting that different ecotypes were sampled during the surveys. In particular, our data would indicate the presence of at least two ecotypes of Synechococcus: a summer ecotype widely distributed in the whole Alboran Sea and a winter ecotype adapted to lower temperature and higher nutrient concentration whose growth is favoured in the eastern sector.

Marine predator surveys in Glacier Bay National Park and Preserve

USGS Publications Warehouse

Bodkin, James L.; Kloecker, Kimberly A.; Coletti, Heather A.; Esslinger, George G.; Monson, Daniel H.; Ballachey, Brenda E.

2002-01-01

Since 1999, vessel based surveys to estimate species composition, distribution and relative abundance of marine birds and mammals have been conducted along coastal and pelagic (offshore) transects in Glacier Bay, Alaska. Surveys have been conducted during winter (November-March) and summer (June). This annual report presents the results of those surveys conducted in March and June of 2001. Following completion of surveys in 2002 we will provide a final report of the results of all surveys conducted between 1999 and 2002.Glacier Bay supports diverse and abundant assemblages of marine birds and mammals. In 2001 we identified 58 species of bird, 7 species of marine mammal, and 6 species of terrestrial mammal on transects sampled during winter and summer. Of course all species are not equally abundant. Among all taxa, in both seasons, sea ducks were the numerically dominant group. In their roles as consumers and because of their generally large size, marine mammals are also likely important in the consumption of energy produced in the Glacier Bay ecosystem. Most common and abundant marine birds and mammals can be placed in either a fish based (e.g. alcids and pinnipeds), or a benthic invertebrate (e.g. sea ducks and sea otters) based food web.Distinct differences in the species composition and abundance of marine birds were observed between winter and summer surveys. Winter marine bird assemblages were dominated numerically (> 11,000; 65% of all birds) by a relatively few species of sea ducks (scoters, goldeneye, Bufflehead, Harlequin and Long-tailed ducks). The sea ducks were distributed almost exclusively along near shore habitats. The prevalence of sea ducks during the March surveys indicates the importance of Glacier Bay as a wintering area for this poorly understood group of animals that occupy a high trophic position in a principally benthic invertebrate (mussel and clam) food web. Marine mammal assemblages were generally consistent between seasons, although Humpback and Killer whales were not observed in winter 2001.Summer marine bird assemblages remained numerically dominated by sea ducks, but species composition shifted between the goldeneye whose density was 44/m2 in winter to < 0.2/m2 in summer, to scoters, whose density was 29/m2 in winter to > 60/m2 in summer. Large increases in Black-legged kittiwake, murrelet (Marbled and Kittlitz’s) and Common merganser densities were detected during summer surveys. Seasonal differences in abundance of species likely reflected differences in life history attributes (e.g. reproductive biology, foraging ecology) among species.Because of differences observed in species composition between the winter and summer, it is apparent that a single annual survey cannot accurately describe the populations of marine birds and mammals that occur in Glacier Bay. Preliminary analysis further suggests that interpretations of data resulting from this type of survey may depend to a large extent on the individual species. Because species exhibit differences in behavior, morphology, coloration, and distribution, accuracy and precision of abundance estimates likely vary among species. Confidence in survey results should be evaluated in consideration of life history and detection probabilities at the species level. However, survey results likely provide reasonable estimates of species composition and relative abundance, as well as accurate abundance estimates for those species whose detection closely approximates one.

Skylab

NASA Image and Video Library

1970-01-01

This chart describes Skylab's Particle Collection device, a scientific experiment designed to study micro-meteoroid particles in near-Earth space and determine their abundance, mass distribution, composition, and erosive effects. The Marshall Space Flight Center had program management responsibility for the development of Skylab hardware and experiments.

Skylab

NASA Image and Video Library

1970-01-01

This photograph shows Skylab's Particle Collection device, a scientific experiment designed to study micro-meteoroid particles in near-Earth space and determine their abundance, mass distribution, composition, and erosive effects. The Marshall Space Flight Center had program management responsibility for the development of Skylab hardware and experiments.

Depth Distribution and Assembly of Sulfate-Reducing Microbial Communities in Marine Sediments of Aarhus Bay

PubMed Central

Jochum, Lara M.; Chen, Xihan; Lever, Mark A.; Loy, Alexander; Jørgensen, Bo Barker; Schramm, Andreas

2017-01-01

ABSTRACT Most sulfate-reducing microorganisms (SRMs) present in subsurface marine sediments belong to uncultured groups only distantly related to known SRMs, and it remains unclear how changing geochemical zones and sediment depth influence their community structure. We mapped the community composition and abundance of SRMs by amplicon sequencing and quantifying the dsrB gene, which encodes dissimilatory sulfite reductase subunit beta, in sediment samples covering different vertical geochemical zones ranging from the surface sediment to the deep sulfate-depleted subsurface at four locations in Aarhus Bay, Denmark. SRMs were present in all geochemical zones, including sulfate-depleted methanogenic sediment. The biggest shift in SRM community composition and abundance occurred across the transition from bioturbated surface sediments to nonbioturbated sediments below, where redox fluctuations and the input of fresh organic matter due to macrofaunal activity are absent. SRM abundance correlated with sulfate reduction rates determined for the same sediments. Sulfate availability showed a weaker correlation with SRM abundances and no significant correlation with the composition of the SRM community. The overall SRM species diversity decreased with depth, yet we identified a subset of highly abundant community members that persists across all vertical geochemical zones of all stations. We conclude that subsurface SRM communities assemble by the persistence of members of the surface community and that the transition from the bioturbated surface sediment to the unmixed sediment below is a main site of assembly of the subsurface SRM community. IMPORTANCE Sulfate-reducing microorganisms (SRMs) are key players in the marine carbon and sulfur cycles, especially in coastal sediments, yet little is understood about the environmental factors controlling their depth distribution. Our results suggest that macrofaunal activity is a key driver of SRM abundance and community structure in marine sediments and that a small subset of SRM species of high relative abundance in the subsurface SRM community persists from the sulfate-rich surface sediment to sulfate-depleted methanogenic subsurface sediment. More generally, we conclude that SRM communities inhabiting the subsurface seabed assemble by the selective survival of members of the surface community. PMID:28939599

Recent Changes in Tree Species Abundance: Patterns, Trends, and Drivers Across Northeastern US Forests

NASA Astrophysics Data System (ADS)

Gudex-Cross, D.; Pontius, J.; Adams, A.

2017-12-01

Monitoring trends in the abundance and distribution of tree species is essential to understanding potential impacts of climate change on forested ecosystems. Related studies to date have largely focused on modeling distributional shifts according to future climate scenarios or used field inventory data to examine compositional changes across broader landscapes. Here, we leverage a novel remote sensing technique that utilizes field data, multitemporal Landsat imagery, and spectral unmixing to model regional changes in the abundance (percent basal area) of key northeastern US species over a 30-year period (1985-2015). We examine patterns in how species abundance has changed, as well as their relationship with climate, landscape, and soil characteristics using spatial regression models. Results show significant declines in overall abundance for sugar maple ( 8.6% 30-yr loss), eastern hemlock ( 7.8% 30-yr loss), balsam fir ( 5.0% 30-yr loss), and red spruce ( 3.8% total 30-yr loss). Species that saw significant increasing abundance include American beech ( 7.0% 30-yr gain) and red maple ( 2.5% 30-yr gain). However, these changes were not consistent across the landscape. For example, red spruce is increasing at upper elevations with concurrent losses in balsam fir and birch species. Similarly, sugar maple decreases are concentrated at lower elevations, likely due to increases in American beech. Various abiotic factors were significantly associated with changes in species composition including landscape position (e.g. longitude, elevation, and heat load index) and ecologically-relevant climate variables (e.g. growing season precipitation and annual temperature range). Interestingly, there was a stronger relationship in abundance changes across longitudes, rather than latitudes or elevations as predicted in modeled species migration scenarios.These results indicate that the dominant composition of northeastern forests is changing in ways that run counter to accepted successional patterns and land use history effects. We hypothesize that climate change and other anthropogenic stress agents (e.g. acid deposition legacy) are likely altering the competitive relationships among co-occurring species, with potential implications for forest management and ecosystem modeling efforts.

[Distribution of aquatic and raptor birds in a freshwater artificial pond of Baja California Sur, Mexico].

PubMed

Castillo-Guerrero, J A; Carmona, R

2001-01-01

We determined the taxonomic composition and spatial-temporal distribution of aquatic and raptor birds in a freshwater artificial pond of El Centenario, Baja California Sur, México, during 24 biweekly censuses (April, 1998 to March, 1999). The pond is particularly attractive for birds because of its variety of food items. A total 25,563 records of 69 species were done, among them the first report of Chlidonias niger and Phalaropus tricolor for the region. Species richness and abundance were determined for the migrant component, mostly Anatidae (16 species and 55.6% of the total abundance) and shorebirds (18 species and 13.3%). The greater number of species and individuals was in C the deepest and more heterogeneous section of the pond. The most important species was Oxyura jamaicensis (30% of the total observed individuals), with highest abundance in the peninsula. The artificial pond presented an atypical and distinct ornithological composition because it is located in an arid region, and acts as a resting site for migrant birds. The site included species that usually live in freshwater and coastal areas, a characteristic reflected in their high richness. It contributes noticeably to the local avian biodiversity.

Spatial and temporal relationships between the invasive snail Bithynia tentaculata and submersed aquatic vegetation in Pool 8 of the Upper Mississippi River

USGS Publications Warehouse

Weeks, Alicia M.; DeJager, Nathan R.; Haro, Roger J.; Sandland, Greg J.

2017-01-01

Bithynia tentaculata is an invasive snail that was first reported in Lake Michigan in 1871 and has since spread throughout a number of freshwater systems of the USA. This invasion has been extremely problematic in the Upper Mississippi River as the snails serve as intermediate hosts for several trematode parasites that have been associated with waterfowl mortality in the region. This study was designed to assess the abundance and distribution of B. tentaculata relative to submersed aquatic vegetation as macrophytes provide important nesting and food resources for migrating waterfowl. Temporal changes in both vegetation and snail densities were compared between 2007 and 2015. Between these years, B. tentaculata densities have nearly quadrupled despite minor changes in vegetation abundance, distribution and composition. Understanding the spatial distribution of B. tentaculata in relation to other habitat features, including submersed vegetation, and quantifying any further changes in the abundance and distribution of B. tentaculata over time will be important for better identifying areas of risk for disease transmission to waterfowl.

Preliminary Iron Distribution on Vesta

NASA Technical Reports Server (NTRS)

Mittlefehldt, David W.; Mittlefehldt, David W.

2013-01-01

The distribution of iron on the surface of the asteroid Vesta was investigated using Dawn's Gamma Ray and Neutron Detector (GRaND) [1,2]. Iron varies predictably with rock type for the howardite, eucrite, and diogenite (HED) meteorites, thought to be representative of Vesta. The abundance of Fe in howardites ranges from about 12 to 15 wt.%. Basaltic eucrites have the highest abundance, whereas, lower crustal and upper mantle materials (cumulate eucrites and diogenites) have the lowest, and howardites are intermediate [3]. We have completed a mapping study of 7.6 MeV gamma rays produced by neutron capture by Fe as measured by the bismuth germanate (BGO) detector of GRaND [1]. The procedures to determine Fe counting rates are presented in detail here, along with a preliminary distribution map, constituting the necessary initial step to quantification of Fe abundances. We find that the global distribution of Fe counting rates is generally consistent with independent mineralogical and compositional inferences obtained by other instruments on Dawn such as measurements of pyroxene absorption bands by the Visual and Infrared Spectrometer (VIR) [4] and Framing Camera (FC) [5] and neutron absorption measurements by GRaND [6].

Distribution and abundance of host-seeking Culex species at three proximate locations with different levels of West Nile virus activity

USGS Publications Warehouse

Rochlin, I.; Ginsberg, H.S.; Campbell, S.R.

2009-01-01

Culex species were monitored at three proximate sites with historically different West Nile virus (WNV) activities. The site with human WNV transmission (epidemic) had the lowest abundance of the putative bridge vectors, Culex pipiens and Cx. salinarius. The site with horse cases but not human cases (epizootic) had the highest percent composition of Cx. salinarius, whereas the site with WNV-positive birds only (enzootic) had the highest Cx. pipiens abundance and percent composition. A total of 29 WNV-positive Culex pools were collected at the enzootic site, 17 at the epidemic site, and 14 at the epizootic site. Published models of human risk using Cx. pipiens and Cx. salinarius as the primary bridge vectors did not explain WNV activity at our sites. Other variables, such as additional vector species, environmental components, and socioeconomic factors, need to be examined to explain the observed patterns of WNV epidemic activity.

The effects of coastal development on sponge abundance, diversity, and community composition on Jamaican coral reefs.

PubMed

Stubler, Amber D; Duckworth, Alan R; Peterson, Bradley J

2015-07-15

Over the past decade, development along the northern coast of Jamaica has accelerated, resulting in elevated levels of sedimentation on adjacent reefs. To understand the effects of this development on sponge community dynamics, we conducted surveys at three locations with varying degrees of adjacent coastal development to quantify species richness, abundance and diversity at two depths (8-10 m and 15-18 m). Sediment accumulation rate, total suspended solids and other water quality parameters were also quantified. The sponge community at the location with the least coastal development and anthropogenic influence was often significantly different from the other two locations, and exhibited higher sponge abundance, richness, and diversity. Sponge community composition and size distribution were statistically different among locations. This study provides correlative evidence that coastal development affects aspects of sponge community ecology, although the precise mechanisms are still unclear. Copyright © 2015 Elsevier Ltd. All rights reserved.

A search for stability gradients in North American breeding bird communities

USGS Publications Warehouse

Noon, B.R.; Dawson, D.K.; Kelly, J.P.

1985-01-01

To search for the existence of stability gradients in North American breeding land bird communities we operationally defined stability (after Jarvinen 1979) as year-to-year persistence in species composition and distribution of species abundances. From the census data for 174 study plots we derived nine indices that estimate the annual variability of species composition, the species abundance distribution, diversity, and breeding density. The resulting matrix of study plot by stability indices was used to estimate the correlation structure of the stability indices. The correlation matrix was, in turn, subjected to a principal components analysis to derive synthetic gradients of variation. We then searched for patterns of variation in these stability gradients associated with either geographic location or habitat type. Three independent principal component axes reproduced most of the variation in the initial data and were interpreted as gradients of variation in species turnover, diversity, and breeding abundance. Thus, the annual stability of community structure apparently responds independently to species and abundance variation. Despite the clarity of the derived gradients, few patterns emerged when the plots were ordinated by either habitat or geographic location. In general, grasslands showed greater annual variation in diversity than forested habitats, and, for some habitats, northern communities were less stable than more southern communities. However, few of these patterns were very strong, and we interpret them cautiously.

A molecular investigation of soil organic carbon composition across a subalpine catchment

USGS Publications Warehouse

Hsu, Hsiao-Tieh; Lawrence, Corey R.; Winnick, Matthew J.; Bargar, John R.; Maher, Katharine

2018-01-01

The dynamics of soil organic carbon (SOC) storage and turnover are a critical component of the global carbon cycle. Mechanistic models seeking to represent these complex dynamics require detailed SOC compositions, which are currently difficult to characterize quantitatively. Here, we address this challenge by using a novel approach that combines Fourier transform infrared spectroscopy (FT-IR) and bulk carbon X-ray absorption spectroscopy (XAS) to determine the abundance of SOC functional groups, using elemental analysis (EA) to constrain the total amount of SOC. We used this SOC functional group abundance (SOC-fga) method to compare variability in SOC compositions as a function of depth across a subalpine watershed (East River, Colorado, USA) and found a large degree of variability in SOC functional group abundances between sites at different elevations. Soils at a lower elevation are predominantly composed of polysaccharides, while soils at a higher elevation have more substantial portions of carbonyl, phenolic, or aromatic carbon. We discuss the potential drivers of differences in SOC composition between these sites, including vegetation inputs, internal processing and losses, and elevation-driven environmental factors. Although numerical models would facilitate the understanding and evaluation of the observed SOC distributions, quantitative and meaningful measurements of SOC molecular compositions are required to guide such models. Comparison among commonly used characterization techniques on shared reference materials is a critical next step for advancing our understanding of the complex processes controlling SOC compositions.

Multidirectional abundance shifts among North American birds and the relative influence of multifaceted climate factors.

PubMed

Huang, Qiongyu; Sauer, John R; Dubayah, Ralph O

2017-09-01

Shifts in species distributions are major fingerprint of climate change. Examining changes in species abundance structures at a continental scale enables robust evaluation of climate change influences, but few studies have conducted these evaluations due to limited data and methodological constraints. In this study, we estimate temporal changes in abundance from North American Breeding Bird Survey data at the scale of physiographic strata to examine the relative influence of different components of climatic factors and evaluate the hypothesis that shifting species distributions are multidirectional in resident bird species in North America. We quantify the direction and velocity of the abundance shifts of 57 permanent resident birds over 44 years using a centroid analysis. For species with significant abundance shifts in the centroid analysis, we conduct a more intensive correlative analysis to identify climate components most strongly associated with composite change of abundance within strata. Our analysis focus on two contrasts: the relative importance of climate extremes vs. averages, and of temperature vs. precipitation in strength of association with abundance change. Our study shows that 36 species had significant abundance shifts over the study period. The average velocity of the centroid is 5.89 km·yr -1 . The shifted distance on average covers 259 km, 9% of range extent. Our results strongly suggest that the climate change fingerprint in studied avian distributions is multidirectional. Among 6 directions with significant abundance shifts, the northwestward shift was observed in the largest number of species (n = 13). The temperature/average climate model consistently has greater predictive ability than the precipitation/extreme climate model in explaining strata-level abundance change. Our study shows heterogeneous avian responses to recent environmental changes. It highlights needs for more species-specific approaches to examine contributing factors to recent distributional changes and for comprehensive conservation planning for climate change adaptation. Published 2017. This article is a U.S. Government work and is in the public domain in the USA.

77 FR 13097 - Endangered Species; File Nos. 15661, 10027, and 15685

Federal Register 2010, 2011, 2012, 2013, 2014

2012-03-05

... population structure, size class composition, foraging ecology, and migration patterns for green and... of green and hawksbill sea turtles focusing on distribution and abundance, ecology, health, and... and population structure, foraging ecology, habitat use, and movements. Researchers may capture...

Light element geochemistry of the Apollo 16 site

NASA Technical Reports Server (NTRS)

Kerridge, J. F.; Kaplan, I. R.; Petrowski, C.; Chang, S.

1975-01-01

The abundance and isotopic composition of carbon, sulfur, and nitrogen, the abundance of helium and hydrogen, and the content of metallic iron are reported for lunar surface samples from the Apollo 16 landing site at Cayley-Descartes. The light elements show marked interstation variability at the site. The abundances in soils of C, N, He, and H are apparently controlled mainly by exposure to the solar wind, through implantation or stripping processes. Carbon abundances (but not observed isotopic distributions) are compatible with a model in which equilibrium is established after 10,000-100,000 yr between solar wind input and loss by proton stripping. Sulfur abundances in soils are apparently controlled by abundances in local country rocks, but the lunar S cycle is quite complex. A metallic iron component may have originated by solar wind reduction of lunar Fe(2+).

Abundance and Distribution Characteristics of Microplastics in Surface Seawaters of the Incheon/Kyeonggi Coastal Region.

PubMed

Chae, Doo-Hyeon; Kim, In-Sung; Kim, Seung-Kyu; Song, Young Kyoung; Shim, Won Joon

2015-10-01

Microplastics in marine environments are of emerging concern due to their widespread distribution, their ingestion by various marine organisms, and their roles as a source and transfer vector of toxic chemicals. However, our understanding of their abundance and distribution characteristics in surface seawater (SSW) remains limited. We investigated microplastics in the surface microlayer (SML) and the SSW at 12 stations near-shore and offshore of the Korean west coast, Incheon/Kyeonggi region. Variation between stations, sampling media, and sampling methods were compared based on abundances, size distribution, and composition profiles of microsized synthetic polymer particles. The abundance of microplastics was greater in the SML (152,688 ± 92,384 particles/m(3)) than in SSW and showed a significant difference based on the sampling method for SSWs collected using a hand net (1602 ± 1274 particles/m(3)) and a zooplankton trawl net (0.19 ± 0.14 particles/m(3)). Ship paint particles (mostly alkyd resin polymer) accounted for the majority of microplastics detected in both SML and SSWs, and increased levels were observed around the voyage routes of large vessels. This indicates that polymers with marine-based origins become an important contributor to microplastics in coastal SSWs of this coastal region.

Diversity and spatial distribution of hydrazine oxidoreductase (hzo) gene in the oxygen minimum zone off Costa Rica.

PubMed

Kong, Liangliang; Jing, Hongmei; Kataoka, Takafumi; Buchwald, Carolyn; Liu, Hongbin

2013-01-01

Anaerobic ammonia oxidation (anammox) as an important nitrogen loss pathway has been reported in marine oxygen minimum zones (OMZs), but the community composition and spatial distribution of anammox bacteria in the eastern tropical North Pacific (ETNP) OMZ are poorly determined. In this study, anammox bacterial communities in the OMZ off Costa Rica (CRD-OMZ) were analyzed based on both hydrazine oxidoreductase (hzo) genes and their transcripts assigned to cluster 1 and 2. The anammox communities revealed by hzo genes and proteins in CRD-OMZ showed a low diversity. Gene quantification results showed that hzo gene abundances peaked in the upper OMZs, associated with the peaks of nitrite concentration. Nitrite and oxygen concentrations may therefore colimit the distribution of anammox bacteria in this area. Furthermore, transcriptional activity of anammox bacteria was confirmed by obtaining abundant hzo mRNA transcripts through qRT-PCR. A novel hzo cluster 2x clade was identified by the phylogenetic analysis and these novel sequences were abundant and widely distributed in this environment. Our study demonstrated that both cluster 1 and 2 anammox bacteria play an active role in the CRD-OMZ, and the cluster 1 abundance and transcriptional activity were higher than cluster 2 in both free-living and particle-attached fractions at both gene and transcriptional levels.

Element-abundance inhomogeneity of interstellar matter as it follows from the chemical composition of the O-type supergiants HDE 226868 (Cyg X-1) and *alpha; Cam

NASA Astrophysics Data System (ADS)

Bochkarev, N. G.; Karitskaya, E. A.; Shimanskii, V. V.; Galazutdinov, G. A.

2013-10-01

By means of synthetic spectrum modeling with non-LTE effects, we determined element abundances in the atmospheres of two O supergiants with similar physical characteristics: HDE 226868 (the optical component of Cyg X-1) and α Cam. These objects are situated at the distance about 2.5 kpc from each other. HDE 226868 has higher abundances compared to α Cam. The differences of Al, S, Zn, and averaged CNO abundances are within 0.15-0.30 dex. This is in a good qualitative agreement with the inhomogeneity of the heavy-element distribution over the Galactic disk derived by Luck et al. (2006) from Cepheids. This finding confirms the inhomogeneity of chemical-element distribution on the scale of 2 kpc and is in agreement with the concept of interstellar-matter superclouds preserving their intrinsic particularities on a time scale in excess of 1 Gyr.

Comparative analysis of distribution and abundance of West Nile and Eastern Equine Encephalomyelitis virus vectors in Suffolk County, New York, using human population density and land use/cover data

USGS Publications Warehouse

Rochlin, I.; Harding, K.; Ginsberg, H.S.; Campbell, S.R.

2008-01-01

Five years of CDC light trap data from Suffolk County, NY, were analyzed to compare the applicability of human population density (HPD) and land use/cover (LUC) classification systems to describe mosquito abundance and to determine whether certain mosquito species of medical importance tend to be more common in urban (defined by HPD) or residential (defined by LUC) areas. Eleven study sites were categorized as urban or rural using U.S. Census Bureau data and by LUC types using geographic information systems (GISs). Abundance and percent composition of nine mosquito taxa, all known or potential vectors of arboviruses, were analyzed to determine spatial patterns. By HPD definitions, three mosquito species, Aedes canadensis (Theobald), Coquillettidia perturbans (Walker), and Culiseta melanura (Coquillett), differed significantly between habitat types, with higher abundance and percent composition in rural areas. Abundance and percent composition of these three species also increased with freshwater wetland, natural vegetation areas, or a combination when using LUC definitions. Additionally, two species, Ae. canadensis and Cs. melanura, were negatively affected by increased residential area. One species, Aedes vexans (Meigen), had higher percent composition in urban areas. Two medically important taxa, Culex spp. and Aedes triseriatus (Say), were proportionally more prevalent in residential areas by LUC classification, as was Aedes trivittatus (Coquillett). Although HPD classification was readily available and had some predictive value, LUC classification resulted in higher spatial resolution and better ability to develop location specific predictive models.

Osmium uptake, distribution, and 187Os/188Os and 187Re/188Os compositions in Phaeophyceae macroalgae, Fucus vesiculosus: Implications for determining the 187Os/188Os composition of seawater

NASA Astrophysics Data System (ADS)

Racionero-Gómez, B.; Sproson, A. D.; Selby, D.; Gannoun, A.; Gröcke, D. R.; Greenwell, H. C.; Burton, K. W.

2017-02-01

The osmium isotopic composition (187Os/188Os) of seawater reflects the balance of input from mantle-, continental- and anthropogenic-derived sources. This study utilizes the Phaeophyceae, Fucus vesiculosus, to analyse its Os abundance and uptake, as well as to assess if macroalgae records the Os isotope composition of the seawater in which it lives. The data demonstrates that Os is not located in one specific biological structure within macroalgae, but is found throughout the organism. Osmium uptake was measured by culturing F. vesiculosus non-fertile tips with different concentrations of Os with a known 187Os/188Os composition (∼0.16), which is significantly different from the background isotopic composition of local seawater (∼0.94). The Os abundance of cultured non-fertile tips show a positive correlation to the concentration of the Os doped seawater. Moreover, the 187Os/188Os composition of the seaweed equalled that of the culture medium, strongly confirming the possible use of macroalgae as a biological proxy for the Os isotopic composition of the seawater.

Deep-Water Coral Diversity and Habitat Associations: Differences among Northeast Atlantic Submarine Canyons

NASA Astrophysics Data System (ADS)

Shank, T. M.

2016-02-01

From 2012 to 2015, annual seafloor surveys using the towed camera TowCam were used to characterize benthic ecosystems and habitats to groundtruth recently developed habitat suitability models that predict deep-sea coral locations in northwest Atlantic canyons. Faunal distribution, abundance, and habitat data were obtained from more than 90 towed camera surveys in 21 canyons, specifically Tom's, Hendrickson, Veatch, Gilbert, Ryan, Powell, Munson, Accomac, Leonard, Washington, Wilmington, Lindenkohl, Clipper, Sharpshooter, Welker, Dogbody, Chebacco, Heel Tapper, File Bottom, Carteret, and Spencer Canyons, as well as unnamed minor canyons and inter-canyon areas. We also investigated additional canyons including Block, Alvin, Atlantis, Welker, Heezen, Phoenix, McMaster, Nantucket, and two minor canyons and two intercanyon areas through high-definition ROV image surveys from the NOAA CANEX 2013 and 2014 expeditions. Significant differences in species composition and distribution correlated with specific habitat types, depth, and individual canyons. High abundances and diversity of scleractinians, antipatharians, octocorals and sponges were highly correlated with habitat substrates, includingvertical canyon walls, margins, sediments, cobbles, boulders, and coral rubble habitat. Significant differences in species composition among canyons were observed across similar depths suggesting that many canyons may have their own biological and geological signature. Locating and defining the composition and distribution of vulnerable coral ecosystems in canyons in concert with validating predictive species distribution modeling has resulted in the regional management and conservation recommendations of these living resources and the largest proposed Marine Protected Area in North American waters.

Particle Collections - Skylab Experiment S149

NASA Technical Reports Server (NTRS)

1970-01-01

This photograph shows Skylab's Particle Collection device, a scientific experiment designed to study micro-meteoroid particles in near-Earth space and determine their abundance, mass distribution, composition, and erosive effects. The Marshall Space Flight Center had program management responsibility for the development of Skylab hardware and experiments.

Particle Collection - Skylab Experiment S149

NASA Technical Reports Server (NTRS)

1970-01-01

This chart describes Skylab's Particle Collection device, a scientific experiment designed to study micro-meteoroid particles in near-Earth space and determine their abundance, mass distribution, composition, and erosive effects. The Marshall Space Flight Center had program management responsibility for the development of Skylab hardware and experiments.

Diversity and distribution of epiphytic bromeliads in a Brazilian subtropical mangrove.

PubMed

Sousa, Mariana M DE; Colpo, Karine D

2017-01-01

It is not unusual to find epiphytic bromeliads in mangroves, but most studies on mangrove vegetation do not record their presence. This study aimed to evaluate the diversity and distribution of epiphytic bromeliads in a subtropical mangrove. The richness, abundance and life form (atmospheric and tank) of bromeliads were recorded and compared among host tree species and waterline proximity. The effects of diameter and height of host trees on the abundance of bromeliads were also assessed. The mangrove was composed of Avicennia schaueriana, Laguncularia racemosa and Rhizophora mangle. We recorded seven bromeliad species of the genera Tillandsia and Vriesea. The waterline proximity did not affect the abundance or diversity of bromeliads, but atmospheric forms were predominant near the waterline, whereas tank bromeliads were more frequent in the interior of the mangrove. The three mangrove species hosted bromeliads, but L. racemosa was the preferred host. The species composition showed that the distribution of bromeliads is more related to the host species than to the distance from the waterline. Bromeliad abundance increased with tree size. Bromeliads can be biological indicators of ecosystem health; therefore, inventories and host tree preferences are necessary knowledge for an adequate management of sensitive ecosystems as mangroves.

Distribution and abundance of anthropogenic marine debris along the shelf and slope of the US West Coast.

PubMed

Keller, Aimee A; Fruh, Erica L; Johnson, Melanie M; Simon, Victor; McGourty, Catherine

2010-05-01

As marine debris levels continue to grow worldwide, defining sources, composition, and distribution of debris, as well as potential effects, becomes increasingly important. We investigated composition and abundance of man-made, benthic marine debris at 1347 randomly selected stations along the US West Coast during Groundfish Bottom Trawl Surveys in 2007 and 2008. Anthropogenic debris was observed in 469 tows at depths of 55-1280 m. Plastic and metallic debris occurred in the greatest number of hauls followed by fabric and glass. Mean density was 67.1 items km(-2) throughout the study area but was significantly higher south of 36 degrees 00'N latitude. Mean density significantly increased with depth, ranging from 30 items km(-2) in shallow (55-183 m) water to 128 items km(-2) in the deepest depth stratum (550-1280 m). Debris densities observed along the US West Coast were comparable to those seen elsewhere and provide a valuable backdrop for future comparisons. (c) 2010 Elsevier Ltd. All rights reserved.

Measuring Elemental Abundances in Impulsive Heating Events with EIS

NASA Astrophysics Data System (ADS)

Warren, Harry; Doschek, George A.; Young, Peter

2015-04-01

It is well established that elemental abundances vary in the solar atmosphere and that this variation is organized by first ionization potential (FIP). Previous studies have indicated that in the solar corona low FIP elements, such as Fe, Si, and Mg, are enriched relative to high FIP elements, such as H, He, C, N, and O. In this paper we report on measurements of plasma composition made during transient heating events observed at transition region temperatures with the Extreme Ultraviolet Imaging Spectrometer (EIS) on Hinode. During these events the intensities of O IV, V, and VI emission lines are enhanced relative to emission lines from Mg V, VI, and VII and indicate a composition close to that of the photosphere. Differential emission measure calculations show a broad distribution of temperatures in these events. Long-lived coronal structures, in contrast, show an enrichment of low FIP elements and relatively narrow temperature distributions. We conjecture that plasma composition is an important signature of the coronal heating process, with impulsive heating leading to the evaporation of unfractionated material from the lower layers of the solar atmosphere and higher frequency heating leading to the accumulation of low-FIP elements in the corona.

Chemical composition of shale oil. 1; Dependence on oil shale origin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kesavan, S.; Lee, S.; Polasky, M.E.

1991-01-01

This paper reports on shale oils obtained by nitrogen retorting of North Carolina, Cleveland, Ohio, Colorado, Rundle, Stuart, and Condor oil shales that have been chemically characterized by g.c.-m.s. techniques. After species identification, chemical compositions of the shale oils have been related to the geological origins of the parent shales. Based on the characteristics observed in the chromatograms, eight semi-quantitative parameters have been used to describe the chromatograms. Six of these parameters describe the chromatograms. Six of these parameters describe the relative abundance and distribution of straight chain alkanes and alkenes in the chromatograms. The other two parameters represent themore » abundance, relative to the total amount of volatiles in the oil, of alkylbenzenes and alkylphenols.« less

Zooplankton and Micronekton Distribution and Interaction with Predators at the Northwest Atlantic Shelf Break and its Canyons

DTIC Science & Technology

2014-09-30

with marine mammals and other predators . APPROACH The datasets being examined in this project include: 1. Depth-stratified net samples from 1...with Predators at the Northwest Atlantic Shelf Break and its Canyons Gareth L. Lawson, Andone C. Lavery, & Peter H. Wiebe Woods Hole...determining the distribution, abundance, and community composition of zooplankton and micronekton and their association with predators (including marine

Archaeal Abundance across a pH Gradient in an Arable Soil and Its Relationship to Bacterial and Fungal Growth Rates

PubMed Central

Sterngren, Anna E.; Rousk, Johannes

2012-01-01

Soil pH is one of the most influential factors for the composition of bacterial and fungal communities, but the influence of soil pH on the distribution and composition of soil archaeal communities has yet to be systematically addressed. The primary aim of this study was to determine how total archaeal abundance (quantitative PCR [qPCR]-based estimates of 16S rRNA gene copy numbers) is related to soil pH across a pH gradient (pH 4.0 to 8.3). Secondarily, we wanted to assess how archaeal abundance related to bacterial and fungal growth rates across the same pH gradient. We identified two distinct and opposite effects of pH on the archaeal abundance. In the lowest pH range (pH 4.0 to 4.7), the abundance of archaea did not seem to correspond to pH. Above this pH range, there was a sharp, almost 4-fold decrease in archaeal abundance, reaching a minimum at pH 5.1 to 5.2. The low abundance of archaeal 16S rRNA gene copy numbers at this pH range then sharply increased almost 150-fold with pH, resulting in an increase in the ratio between archaeal and bacterial copy numbers from a minimum of 0.002 to more than 0.07 at pH 8. The nonuniform archaeal response to pH could reflect variation in the archaeal community composition along the gradient, with some archaea adapted to acidic conditions and others to neutral to slightly alkaline conditions. This suggestion is reinforced by observations of contrasting outcomes of the (competitive) interactions between archaea, bacteria, and fungi toward the lower and higher ends of the examined pH gradient. PMID:22706045

Archaeal abundance across a pH gradient in an arable soil and its relationship to bacterial and fungal growth rates.

PubMed

Bengtson, Per; Sterngren, Anna E; Rousk, Johannes

2012-08-01

Soil pH is one of the most influential factors for the composition of bacterial and fungal communities, but the influence of soil pH on the distribution and composition of soil archaeal communities has yet to be systematically addressed. The primary aim of this study was to determine how total archaeal abundance (quantitative PCR [qPCR]-based estimates of 16S rRNA gene copy numbers) is related to soil pH across a pH gradient (pH 4.0 to 8.3). Secondarily, we wanted to assess how archaeal abundance related to bacterial and fungal growth rates across the same pH gradient. We identified two distinct and opposite effects of pH on the archaeal abundance. In the lowest pH range (pH 4.0 to 4.7), the abundance of archaea did not seem to correspond to pH. Above this pH range, there was a sharp, almost 4-fold decrease in archaeal abundance, reaching a minimum at pH 5.1 to 5.2. The low abundance of archaeal 16S rRNA gene copy numbers at this pH range then sharply increased almost 150-fold with pH, resulting in an increase in the ratio between archaeal and bacterial copy numbers from a minimum of 0.002 to more than 0.07 at pH 8. The nonuniform archaeal response to pH could reflect variation in the archaeal community composition along the gradient, with some archaea adapted to acidic conditions and others to neutral to slightly alkaline conditions. This suggestion is reinforced by observations of contrasting outcomes of the (competitive) interactions between archaea, bacteria, and fungi toward the lower and higher ends of the examined pH gradient.

Composition of Anopheline (Diptera: Culicidae) Community and Its Seasonal Variation in Three Environments of the City of Puerto Iguazú, Misiones, Argentina.

PubMed

Ramirez, P G; Stein, M; Etchepare, E G; Almirón, W R

2018-02-28

In order to extend the knowledge of the composition of the anopheline community and the seasonal variation related to anthropogenic modifications in the city of Puerto Iguazú, adult females were captured between 2009 and 2012. Samples were collected in three environments with different degrees of anthropogenic modification: urban, periurban, and wild. Alpha diversity was evaluated as the 'true' diversity of the species in each environment. Among environments, range-abundance curves were used to compare the composition, abundance, and uniformity of species and cluster analysis was used to analyze the similarities and differences. The temporal distribution was analyzed and the relative abundance of the species captured was correlated with meteorological variables. A total of 4,565 females, belonging to seven species: Anopheles albitarsis s.s. (Lynch-Arribálzaga), Anopheles argyritarsis (Robineau-Desvoidy), Anopheles deaneorum (Rosa-Freitas), Anopheles fluminensis (Root), Anopheles mediopunctatus (Theobald), Anopheles strodei s.l. (Root), and Anopheles triannulatus s.l. (Neiva and Pinto) were captured. The wild environment showed higher abundance, diversity, and greater uniformity reflected on the less sharp area of the range-abundance curve. Species richness was the same in the wild and periurban environments. Higher abundances were observed in summer during the months with higher temperatures. Although the wild environment showed greater Anopheles abundances and diversity, specific richness and species complementarity were similar among the three environments studied. Thus, the periurban environment would turn into a transition zone of great epidemiological importance due to the introduction of people in this environment, which represents a potential risk of malaria transmission in the area.

THREE DISCRETE GROUPS WITH HOMOGENEOUS CHEMISTRY ALONG THE RED GIANT BRANCH IN THE GLOBULAR CLUSTER NGC 2808

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carretta, E., E-mail: eugenio.carretta@oabo.inaf.it

2014-11-10

We present the homogeneous reanalysis of Mg and Al abundances from high resolution UVES/FLAMES spectra for 31 red giants in the globular cluster NGC 2808. We found a well defined Mg-Al anticorrelation reaching a regime of subsolar Mg abundance ratios, with a spread of about 1.4 dex in [Al/Fe]. The main result from the improved statistics of our sample is that the distribution of stars is not continuous along the anticorrelation because they are neatly clustered into three distinct clumps, each with different chemical compositions. One group (P) shows a primordial composition of field stars of similar metallicity, and the other twomore » (I and E) have increasing abundances of Al and decreasing abundances of Mg. The fraction of stars we found in the three components (P: 68%, I: 19%, E: 13%) is in excellent agreement with the ratios computed for the three distinct main sequences in NGC 2808: for the first time there is a clear correspondence between discrete photometric sequences of dwarfs and distinct groups of giants with homogeneous chemistry. The composition of the I group cannot be reproduced by mixing of matter with extreme processing in hot H-burning and gas with pristine, unprocessed composition, as also found in the recent analysis of three discrete groups in NGC 6752. This finding suggests that different classes of polluters were probably at work in NGC 2808 as well.« less

Characterizing regional soil mineral composition using spectroscopyand geostatistics

USGS Publications Warehouse

Mulder, V.L.; de Bruin, S.; Weyermann, J.; Kokaly, Raymond F.; Schaepman, M.E.

2013-01-01

This work aims at improving the mapping of major mineral variability at regional scale using scale-dependent spatial variability observed in remote sensing data. Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) data and statistical methods were combined with laboratory-based mineral characterization of field samples to create maps of the distributions of clay, mica and carbonate minerals and their abundances. The Material Identification and Characterization Algorithm (MICA) was used to identify the spectrally-dominant minerals in field samples; these results were combined with ASTER data using multinomial logistic regression to map mineral distributions. X-ray diffraction (XRD)was used to quantify mineral composition in field samples. XRD results were combined with ASTER data using multiple linear regression to map mineral abundances. We testedwhether smoothing of the ASTER data to match the scale of variability of the target sample would improve model correlations. Smoothing was donewith Fixed Rank Kriging (FRK) to represent the mediumand long-range spatial variability in the ASTER data. Stronger correlations resulted using the smoothed data compared to results obtained with the original data. Highest model accuracies came from using both medium and long-range scaled ASTER data as input to the statistical models. High correlation coefficients were obtained for the abundances of calcite and mica (R2 = 0.71 and 0.70, respectively). Moderately-high correlation coefficients were found for smectite and kaolinite (R2 = 0.57 and 0.45, respectively). Maps of mineral distributions, obtained by relating ASTER data to MICA analysis of field samples, were found to characterize major soil mineral variability (overall accuracies for mica, smectite and kaolinite were 76%, 89% and 86% respectively). The results of this study suggest that the distributions of minerals and their abundances derived using FRK-smoothed ASTER data more closely match the spatial variability of soil and environmental properties at regional scale.

Characterization and petrologic interpretation of olivine-rich basalts at Gusev Crater, Mars

USGS Publications Warehouse

McSween, H.Y.; Wyatt, M.B.; Gellert, Ralf; Bell, J.F.; Morris, R.V.; Herkenhoff, K. E.; Crumpler, L.S.; Milam, K.A.; Stockstill, K.R.; Tornabene, L.L.; Arvidson, R. E.; Bartlett, P.; Blaney, D.; Cabrol, N.A.; Christensen, P.R.; Clark, B. C.; Crisp, J.A.; Des Marais, D.J.; Economou, T.; Farmer, J.D.; Farrand, W.; Ghosh, A.; Golombek, M.; Gorevan, S.; Greeley, R.; Hamilton, V.E.; Johnson, J. R.; Joliff, B.L.; Klingelhofer, G.; Knudson, A.T.; McLennan, S.; Ming, D.; Moersch, J.E.; Rieder, R.; Ruff, S.W.; Schrorder, C.; de Souza, P.A.; Squyres, S. W.; Wanke, H.; Wang, A.; Yen, A.; Zipfel, J.

2006-01-01

Rocks on the floor of Gusev crater are basalts of uniform composition and mineralogy. Olivine, the only mineral to have been identified or inferred from data by all instruments on the Spirit rover, is especially abundant in these rocks. These picritic basalts are similar in many respects to certain Martian meteorites (olivine-phyric shergottites). The olivine megacrysts in both have intermediate compositions, with modal abundances ranging up to 20-30%. Associated minerals in both include low-calcium and high-calcium pyroxenes, plagioclase of intermediate composition, iron-titanium-chromium oxides, and phosphate. These rocks also share minor element trends, reflected in their nickel-magnesium and chromium-magnesium ratios. Gusev basalts and shergottites appear to have formed from primitive magmas produced by melting an undepleted mantle at depth and erupted without significant fractionation. However, apparent differences between Gusev rocks and shergottites in their ages, plagioclase abundances, and volatile contents preclude direct correlation. Orbital determinations of global olivine distribution and compositions by thermal emission spectroscopy suggest that olivine-rich rocks may be widespread. Because weathering under acidic conditions preferentially attacks olivine and disguises such rocks beneath alteration rinds, picritic basalts formed from primitive magmas may even be a common component of the Martian crust formed during ancient and recent times. Copyright 2006 by the American Geophysical Union.

The effects of forest-savanna-grassland gradients on bird communities of Chiquitano Dry Forests domain, in western Brazil.

PubMed

Godoi, Mauricio N; Souza, Edivaldo O DE

2016-01-01

Different vegetation types are distributed in mountains according to altitude, topography and soil. The composition and structure of bird communities in these areas can change in relation to the vegetation gradient, with particular communities occupying each habitat type. In this study we present the changes in composition, species richness and bird abundance over the gradient of forests, savannas and altitudinal grasslands of Maciço do Urucum, a mountainous region located in the Chiquitano Dry Forests domain in western Brazil. We recorded 165 bird species through qualitative and quantitative methods. Forested savannas, riparian forests and submontane forests presented the highest richness and abundance of birds, while arboreal savannas and altitudinal grasslands had intermediate and low values, respectively. The bird composition was similar between riparian and submontane forests, while other vegetation types present more dissimilar bird communities. Our results show differences in composition, richness and bird abundance among the vegetation types present at Maciço do Urucum, and highlight an important function of vegetation gradients for the conservation of bird communities in mountains. Additionally, this is the first study of the bird communities in the Brazilian Chiquitano Dry Forests, an important domain in the west of Brazil which has been poorly studied.

Characterization and Petrologic Interpretation of Olivine-Rich Basalts at Gusev Crater, Mars

NASA Technical Reports Server (NTRS)

McSween, H. Y.; Wyatt, M. B.; Gellert, R.; Bell, J. F., III; Morris, R. V.; Herkenhoff, K. E.; Crumpler, L. S.; Milam, K. A.; Stockstill, K. R.; Tornabene, L. L.;

New biostratigraphic data on an Upper Hauterivian–Upper Barremian ammonite assemblage from the Dolomites (Southern Alps, Italy)

PubMed Central

Lukeneder, Alexander

2012-01-01

A biostratigraphic subdivision, based on ammonites, is proposed for the Lower Cretaceous pelagic to hemipelagic succession of the Puez area (Southern Alps, Italy). Abundant ammonites enable recognition of recently established Mediterranean ammonite zones from the upper Hauterivian Balearites balearis Zone (Crioceratites krenkeli Subzone) to the upper Barremian Gerhardtia sartousiana Zone (Gerhardtia sartousiana Subzone). Ammonites are restricted to the lowermost part of the Puez Formation, the Puez Limestone Member (ca. 50 m; marly limestones; Hauterivian–Barremian). Numerous ammonite specimens are documented for the first time from the Southern Alps (e.g., Dolomites). Ammonite abundances are clearly linked to sea-level changes from Late Hauterivian to mid Late Barremian times. Abundance and diversity peaks occur during phases of high sea-level pulses and the corresponding maximum flooding surfaces (P. mortilleti/P. picteti and G. sartousiana zones). The ammonite composition of the Puez Formation sheds light on the Early Cretaceous palaeobiogeography of the Dolomites. It also highlights the palaeoenvironmental evolution of basins and plateaus and provides insights into the faunal composition and distribution within the investigated interval. The intermittent palaeogeographic situation of the Puez locality during the Early Cretaceous serves as a key for understanding Mediterranean ammonite distribution. PMID:27087716

The Composition of Comet C 2012 K1 (PanSTARRS) and the Distribution of Primary Volatile Abundances Among Comets

NASA Technical Reports Server (NTRS)

Roth, Nathan X.; Gibb, Erika; Bonev, Boncho P.; Disanti, Michael A.; Mumma, Michael J.; Villanueva, Geronimo L.; Paganini, Lucas

2017-01-01

On 2014 May 22 and 24 we characterized the volatile composition of the dynamically new Oort cloud comet C2012 K1 (PanSTARRS) using the long-slit, high resolution ( lambda/delta lambda is approximately or equal to 25,000) near-infrared echelle spectrograph (NIRSPEC) at the 10 m Keck II telescope on Maunakea, Hawaii. We detected fluorescent emission from six primary volatiles (H2O, HCN, CH4, C2H6, CH3OH, and CO). Upper limits were derived for C2H2, NH3, and H2CO. We report rotational temperatures, production rates, and mixing ratios (relative to water). Compared with median abundance ratios for primary volatiles in other sampled Oort cloud comets, trace gas abundance ratios in C2012 K1 (PanSTARRS) for CO and HCN are consistent, but CH3OH and C2H6 are enriched while H2CO, CH4, and possibly C2H2 are depleted. When placed in context with comets observed in the near- infrared to date, the data suggest a continuous distribution of abundances of some organic volatiles (HCN, C2H6, CH3OH, CH4) among the comet population. The level of enrichment or depletion in a given comet does not necessarily correlate across all molecules sampled, suggesting that chemical diversity among comets may be more complex than the simple organics-enriched, organics-normal, and organics-depleted framework.

Patterns of distribution and environmental correlates of macroalgal assemblages and sediment chlorophyll a in Oregon tidal wetlands

EPA Science Inventory

Algae have important functional roles in estuarine wetlands along the Pacific coast of the United States. We quantified differences in macroalgal abundance, composition and diversity, and sediment chlorophyll a and pheophytin a among three National Wetlands Inventory emergent mar...

Composition of high-elevation breeding bird assemblages and environmental correlates in the southern Blue Ridge Province

Treesearch

Scott M. Pearson

2010-01-01

Climatic and landscape change threaten to alter the distribution, abundance, and quality of wildlife habitats in the Appalachians. Knowledge of habitat associations and potential responses to these forces of change will be necessary for informed management and conservation of high-elevation communities.

Tidal wetland plant and algal assemblages in Oregon: spatial patterns of composition and vulnerability to climate change

EPA Science Inventory

Tidal wetlands support important ecosystem functions along the coast of the Pacific Northwest such as primary production and nutrient transformation. Sea-level rise (SLR) and elevated salinity due to climate change may affect the abundance, distribution, and diversity of plants a...

Ichthyoplankton spatial pattern in the inner shelf off Bahía Blanca Estuary, SW Atlantic Ocean

NASA Astrophysics Data System (ADS)

Hoffmeyer, Mónica Susana; Clara, Menéndez María; Florencia, Biancalana; Mabel, Nizovoy Alicia; Ramón, Torres Eduardo

2009-09-01

This study focuses on the composition, abundance and distribution of ichthyoplankton in the inner shelf area off Bahía Blanca Estuary on the SW Atlantic Ocean during late spring. Eggs and larvae of Brevoortia aurea, Engraulis anchoita, Parona signata, Sciaenidae spp. - such as Cynoscion guatucupa and Micropogonias furnieri -, and Odontesthes argentinensis were found. Species richness was low probably as a result of season and shallow depths. Ichthyoplankton abundance reached values close to 10 000 per 10 m -3 (eggs) and 4000 per 10 m -3 (larvae) and displayed a spatial distribution pattern with maximum abundance values restricted to a band parallel to the coast. Differences between egg and larval patterns, probably derived from a different displacement and hydrodynamic behavior, were observed. Egg and larvae distribution patterns were found related with spawning areas and to directly depend on salinity and mesozooplankton. The larvae distribution pattern, in particular, was found to inversely depend on particulate organic carbon. In addition, the geographic location of egg and larvae maxima strongly coincided with a saline front reported for this area in springtime, thus suggesting a direct relationship with it.

Broad Distribution of Diverse Anaerobic Ammonium-Oxidizing Bacteria in Chinese Agricultural Soils

PubMed Central

Shen, Li-dong; Liu, Shuai; Lou, Li-ping; Liu, Wei-ping; Xu, Xiang-yang; Zheng, Ping

2013-01-01

Anaerobic ammonium-oxidizing (anammox) bacteria have been detected in many marine and freshwater ecosystems. However, little is known about the distribution, diversity, and abundance of anammox bacteria in terrestrial ecosystems. In this study, anammox bacteria were found to be present in various agricultural soils collected from 32 different locations in China. Phylogenetic analysis of the 16S rRNA genes showed “Candidatus Brocadia,” “Candidatus Kuenenia,” “Candidatus Anammoxoglobus,” and “Candidatus Jettenia” in the collected soils, with “Candidatus Brocadia” being the dominant genus. Quantitative PCR showed that the abundance of anammox bacteria ranged from 6.38 × 104 ± 0.42 × 104 to 3.69 × 106 ± 0.25 × 106 copies per gram of dry weight. Different levels of diversity, composition, and abundance of the anammox bacterial communities were observed, and redundancy analysis indicated that the soil organic content and the distribution of anammox communities were correlated in the soils examined. Furthermore, Pearson correlation analysis showed that the diversity of the anammox bacteria was positively correlated with the soil ammonium content and the organic content, while the anammox bacterial abundance was positively correlated with the soil ammonium content. These results demonstrate the broad distribution of diverse anammox bacteria and its correlation with the soil environmental conditions within an extensive range of Chinese agricultural soils. PMID:23747706

Diversity and Spatial Distribution of Hydrazine Oxidoreductase (hzo) Gene in the Oxygen Minimum Zone Off Costa Rica

PubMed Central

Kong, Liangliang; Jing, Hongmei; Kataoka, Takafumi; Buchwald, Carolyn; Liu, Hongbin

2013-01-01

Anaerobic ammonia oxidation (anammox) as an important nitrogen loss pathway has been reported in marine oxygen minimum zones (OMZs), but the community composition and spatial distribution of anammox bacteria in the eastern tropical North Pacific (ETNP) OMZ are poorly determined. In this study, anammox bacterial communities in the OMZ off Costa Rica (CRD-OMZ) were analyzed based on both hydrazine oxidoreductase (hzo) genes and their transcripts assigned to cluster 1 and 2. The anammox communities revealed by hzo genes and proteins in CRD-OMZ showed a low diversity. Gene quantification results showed that hzo gene abundances peaked in the upper OMZs, associated with the peaks of nitrite concentration. Nitrite and oxygen concentrations may therefore colimit the distribution of anammox bacteria in this area. Furthermore, transcriptional activity of anammox bacteria was confirmed by obtaining abundant hzo mRNA transcripts through qRT-PCR. A novel hzo cluster 2x clade was identified by the phylogenetic analysis and these novel sequences were abundant and widely distributed in this environment. Our study demonstrated that both cluster 1 and 2 anammox bacteria play an active role in the CRD-OMZ, and the cluster 1 abundance and transcriptional activity were higher than cluster 2 in both free-living and particle-attached fractions at both gene and transcriptional levels. PMID:24205176

Ammonia-Oxidizing Archaea Show More Distinct Biogeographic Distribution Patterns than Ammonia-Oxidizing Bacteria across the Black Soil Zone of Northeast China.

PubMed

Liu, Junjie; Yu, Zhenhua; Yao, Qin; Sui, Yueyu; Shi, Yu; Chu, Haiyan; Tang, Caixian; Franks, Ashley E; Jin, Jian; Liu, Xiaobing; Wang, Guanghua

2018-01-01

Black soils (Mollisols) of northeast China are highly productive and agriculturally important for food production. Ammonia-oxidizing microbes play an important role in N cycling in the black soils. However, the information related to the composition and distribution of ammonia-oxidizing microbes in the black soils has not yet been addressed. In this study, we used the amoA gene to quantify the abundance and community composition of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) across the black soil zone. The amoA abundance of AOA was remarkably larger than that of AOB, with ratios of AOA/AOB in the range from 3.1 to 91.0 across all soil samples. The abundance of AOA amoA was positively correlated with total soil C content ( p < 0.001) but not with soil pH ( p > 0.05). In contrast, the abundance of AOB amoA positively correlated with soil pH ( p = 0.009) but not with total soil C. Alpha diversity of AOA did not correlate with any soil parameter, however, alpha diversity of AOB was affected by multiple soil factors, such as soil pH, total P, N, and C, available K content, and soil water content. Canonical correspondence analysis indicated that the AOA community was mainly affected by the sampling latitude, followed by soil pH, total P and C; while the AOB community was mainly determined by soil pH, as well as total P, C and N, water content, and sampling latitude, which highlighted that the AOA community was more geographically distributed in the black soil zone of northeast China than AOB community. In addition, the pairwise analyses showed that the potential nitrification rate (PNR) was not correlated with alpha diversity but weakly positively with the abundance of the AOA community ( p = 0.048), whereas PNR significantly correlated positively with the richness ( p = 0.003), diversity ( p = 0.001) and abundance ( p < 0.001) of the AOB community, which suggested that AOB community might make a greater contribution to nitrification than AOA community in the black soils when ammonium is readily available.

Ammonia-Oxidizing Archaea Show More Distinct Biogeographic Distribution Patterns than Ammonia-Oxidizing Bacteria across the Black Soil Zone of Northeast China

PubMed Central

Liu, Junjie; Yu, Zhenhua; Yao, Qin; Sui, Yueyu; Shi, Yu; Chu, Haiyan; Tang, Caixian; Franks, Ashley E.; Jin, Jian; Liu, Xiaobing; Wang, Guanghua

2018-01-01

Black soils (Mollisols) of northeast China are highly productive and agriculturally important for food production. Ammonia-oxidizing microbes play an important role in N cycling in the black soils. However, the information related to the composition and distribution of ammonia-oxidizing microbes in the black soils has not yet been addressed. In this study, we used the amoA gene to quantify the abundance and community composition of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) across the black soil zone. The amoA abundance of AOA was remarkably larger than that of AOB, with ratios of AOA/AOB in the range from 3.1 to 91.0 across all soil samples. The abundance of AOA amoA was positively correlated with total soil C content (p < 0.001) but not with soil pH (p > 0.05). In contrast, the abundance of AOB amoA positively correlated with soil pH (p = 0.009) but not with total soil C. Alpha diversity of AOA did not correlate with any soil parameter, however, alpha diversity of AOB was affected by multiple soil factors, such as soil pH, total P, N, and C, available K content, and soil water content. Canonical correspondence analysis indicated that the AOA community was mainly affected by the sampling latitude, followed by soil pH, total P and C; while the AOB community was mainly determined by soil pH, as well as total P, C and N, water content, and sampling latitude, which highlighted that the AOA community was more geographically distributed in the black soil zone of northeast China than AOB community. In addition, the pairwise analyses showed that the potential nitrification rate (PNR) was not correlated with alpha diversity but weakly positively with the abundance of the AOA community (p = 0.048), whereas PNR significantly correlated positively with the richness (p = 0.003), diversity (p = 0.001) and abundance (p < 0.001) of the AOB community, which suggested that AOB community might make a greater contribution to nitrification than AOA community in the black soils when ammonium is readily available. PMID:29497404

Integrating spatially explicit indices of abundance and habitat quality: an applied example for greater sage-grouse management

USGS Publications Warehouse

Coates, Peter S.; Casazza, Michael L.; Ricca, Mark A.; Brussee, Brianne E.; Blomberg, Erik J.; Gustafson, K. Benjamin; Overton, Cory T.; Davis, Dawn M.; Niell, Lara E.; Espinosa, Shawn P.; Gardner, Scott C.; Delehanty, David J.

2016-01-01

Predictive species distributional models are a cornerstone of wildlife conservation planning. Constructing such models requires robust underpinning science that integrates formerly disparate data types to achieve effective species management. Greater sage-grouse Centrocercus urophasianus, hereafter “sage-grouse” populations are declining throughout sagebrush-steppe ecosystems in North America, particularly within the Great Basin, which heightens the need for novel management tools that maximize use of available information. Herein, we improve upon existing species distribution models by combining information about sage-grouse habitat quality, distribution, and abundance from multiple data sources. To measure habitat, we created spatially explicit maps depicting habitat selection indices (HSI) informed by > 35 500 independent telemetry locations from > 1600 sage-grouse collected over 15 years across much of the Great Basin. These indices were derived from models that accounted for selection at different spatial scales and seasons. A region-wide HSI was calculated using the HSI surfaces modelled for 12 independent subregions and then demarcated into distinct habitat quality classes. We also employed a novel index to describe landscape patterns of sage-grouse abundance and space use (AUI). The AUI is a probabilistic composite of: (i) breeding density patterns based on the spatial configuration of breeding leks and associated trends in male attendance; and (ii) year-round patterns of space use indexed by the decreasing probability of use with increasing distance to leks. The continuous AUI surface was then reclassified into two classes representing high and low/no use and abundance. Synthesis and applications. Using the example of sage-grouse, we demonstrate how the joint application of indices of habitat selection, abundance, and space use derived from multiple data sources yields a composite map that can guide effective allocation of management intensity across multiple spatial scales. As applied to sage-grouse, the composite map identifies spatially explicit management categories within sagebrush steppe that are most critical to sustaining sage-grouse populations as well as those areas where changes in land use would likely have minimal impact. Importantly, collaborative efforts among stakeholders guide which intersections of habitat selection indices and abundance and space use classes are used to define management categories. Because sage-grouse are an umbrella species, our joint-index modelling approach can help target effective conservation for other sagebrush obligate species, and can be readily applied to species in other ecosystems with similar life histories, such as central-placed breeding.

Integrating spatially explicit indices of abundance and habitat quality: an applied example for greater sage-grouse management.

PubMed

Coates, Peter S; Casazza, Michael L; Ricca, Mark A; Brussee, Brianne E; Blomberg, Erik J; Gustafson, K Benjamin; Overton, Cory T; Davis, Dawn M; Niell, Lara E; Espinosa, Shawn P; Gardner, Scott C; Delehanty, David J

2016-02-01

Predictive species distributional models are a cornerstone of wildlife conservation planning. Constructing such models requires robust underpinning science that integrates formerly disparate data types to achieve effective species management.Greater sage-grouse Centrocercus urophasianus , hereafter 'sage-grouse' populations are declining throughout sagebrush-steppe ecosystems in North America, particularly within the Great Basin, which heightens the need for novel management tools that maximize the use of available information.Herein, we improve upon existing species distribution models by combining information about sage-grouse habitat quality, distribution and abundance from multiple data sources. To measure habitat, we created spatially explicit maps depicting habitat selection indices (HSI) informed by >35 500 independent telemetry locations from >1600 sage-grouse collected over 15 years across much of the Great Basin. These indices were derived from models that accounted for selection at different spatial scales and seasons. A region-wide HSI was calculated using the HSI surfaces modelled for 12 independent subregions and then demarcated into distinct habitat quality classes.We also employed a novel index to describe landscape patterns of sage-grouse abundance and space use (AUI). The AUI is a probabilistic composite of the following: (i) breeding density patterns based on the spatial configuration of breeding leks and associated trends in male attendance; and (ii) year-round patterns of space use indexed by the decreasing probability of use with increasing distance to leks. The continuous AUI surface was then reclassified into two classes representing high and low/no use and abundance. Synthesis and application s. Using the example of sage-grouse, we demonstrate how the joint application of indices of habitat selection, abundance and space use derived from multiple data sources yields a composite map that can guide effective allocation of management intensity across multiple spatial scales. As applied to sage-grouse, the composite map identifies spatially explicit management categories within sagebrush steppe that are most critical to sustaining sage-grouse populations as well as those areas where changes in land use would likely have minimal impact. Importantly, collaborative efforts among stakeholders guide which intersections of habitat selection indices and abundance and space use classes are used to define management categories. Because sage-grouse are an umbrella species, our joint-index modelling approach can help target effective conservation for other sagebrush obligate species and can be readily applied to species in other ecosystems with similar life histories, such as central-placed breeding.

Relating Aerosol Mass and Optical Depth in the Summertime Continental Boundary Layer

NASA Astrophysics Data System (ADS)

Brock, C. A.; Wagner, N.; Middlebrook, A. M.; Attwood, A. R.; Washenfelder, R. A.; Brown, S. S.; McComiskey, A. C.; Gordon, T. D.; Welti, A.; Carlton, A. G.; Murphy, D. M.

2014-12-01

Aerosol optical depth (AOD), the column-integrated ambient aerosol light extinction, is determined from satellite and ground-based remote sensing measurements. AOD is the parameter most often used to validate earth system model simulations of aerosol mass. Relating aerosol mass to AOD, however, is problematic due to issues including aerosol water uptake as a function of relative humidity (RH) and the complicated relationship between aerosol physicochemical properties and light extinction. Measurements of aerosol microphysical, chemical, and optical properties help to constrain the relationship between aerosol mass and optical depth because aerosol extinction at ambient RH is a function of the abundance, composition and size distribution of the aerosol. We use vertical profiles of humidity and dry aerosol extinction observed in the southeastern United States (U.S.) to examine the relationship between submicron aerosol mass concentration and extinction at ambient RH. We show that the κ-Köhler parameterization directly, and without additional Mie calculations, describes the change in extinction with varying RH as a function of composition for both aged aerosols typical of the polluted summertime continental boundary layer and the biomass burning aerosols we encountered. We calculate how AOD and the direct radiative effect in the eastern U.S. have likely changed due to trends in aerosol composition in recent decades. We also examine the sensitivity of AOD to the RH profile and to aerosol composition, size distribution and abundance.

Distribution, abundance, diversity and habitat associations of fishes across a bioregion experiencing rapid coastal development

NASA Astrophysics Data System (ADS)

McLean, Dianne L.; Langlois, Tim J.; Newman, Stephen J.; Holmes, Thomas H.; Birt, Matthew J.; Bornt, Katrina R.; Bond, Todd; Collins, Danielle L.; Evans, Scott N.; Travers, Michael J.; Wakefield, Corey B.; Babcock, Russ C.; Fisher, Rebecca

2016-09-01

Knowledge of the factors that influence spatial patterns in fish abundance, distribution and diversity are essential for informing fisheries and conservation management. The present study was conducted in the nearshore Pilbara bioregion of north-western Australia where the dynamic marine environment is characterised by large embayments, numerous islands and islets, coexisting with globally significant petrochemical and mineral industries. Within Western Australia, this nearshore bioregion has high biodiversity and is considered to play an essential role in the recruitment of species of commercial importance. To better inform future investigations into both ecological processes and planning scenarios for management, a rapid assessment of the distribution, abundance and associations with nearshore habitats of fishes across the region was conducted. Baited remote underwater stereo-video systems (stereo-BRUVs) were used to simultaneously sample the fish assemblage and habitat composition. Generalised additive mixed models (GAMMs) were used to determine whether the abundance of fishes were related to habitat and a range of environmental variables (visibility, depth, distance to 30 m and 200 m depth isobars, boat ramps and the nearest large embayment (Exmouth Gulf). A diverse fish assemblage comprising 343 species from 58 families was recorded. The abundance and distribution patterns of fishery-target species and of the five most common and abundant species and families were linked positively with areas of high relief, hard coral cover, reef and macroalgae and negatively with the distance to the nearest oceanic waters (200 m depth isobar). This study provides information that can contribute to future marine spatial planning scenarios for management of the Pilbara using a unique, analytical approach that has broad application in biogeography.

Seasonal dynamics of zooplankton in Columbia–Snake River reservoirs,with special emphasis on the invasive copepod Pseudodiaptomus forbesi

USGS Publications Warehouse

Emerson, Joshua E.; Bollens, Stephen M.; Counihan, Timothy D.

2015-01-01

The Asian copepod Pseudodiaptomus forbesi has recently become established in the Columbia River. However, little is known about its ecology and effects on invaded ecosystems. We undertook a 2-year (July 2009 to June 2011) field study of the mesozooplankton in four reservoirs in the Columbia and Snake Rivers, with emphasis on the relation of the seasonal variation in distribution and abundance of P. forbesi to environmental variables. Pseudodiaptomus forbesi was abundant in three reservoirs; the zooplankton community of the fourth reservoir contained no known non-indigenous taxa. The composition and seasonal succession of zooplankton were similar in the three invaded reservoirs: a bloom of rotifers occurred in spring, native cyclopoid and cladoceran species peaked in abundance in summer, and P. forbesi was most abundant in late summer and autumn. In the uninvaded reservoir, total zooplankton abundance was very low year-round. Multivariate ordination indicated that temperature and dissolved oxygen were strongly associated with zooplankton community structure, with P. forbesi appearing to exhibit a single generation per year . The broad distribution and high abundance of P. forbesi in the Columbia–Snake River System could result in ecosystem level effects in areas intensively managed to improve conditions for salmon and other commercially and culturally important fish species. 

Salp distribution and size composition in the Atlantic sector of the Southern Ocean

NASA Astrophysics Data System (ADS)

Kawaguchi, S.; Siegel, V.; Litvinov, F.; Loeb, V.; Watkins, J.

2004-06-01

Salp abundance and length frequency were measured during the large-scale CCAMLR 2000 Survey conducted in the Atlantic Sector of the Southern Ocean in the 1999/2000 season. Results from regional surveys around Elephant Island in 1994/95 and 1996/97 seasons also were examined. During the CCAMLR 2000 Survey, salp abundance was higher in the Antarctic Peninsula and South Sandwich Island areas than in the central Scotia Sea. The probable reason for this pattern is a negative relationship with phytoplankton abundance; the central Scotia Sea having greater phytoplankton concentrations than required for optimal salp filter-feeding performance. Cluster analysis of salp size composition resulted in three cluster groups for each of the three surveys. Clusters comprising large salps occurred in warmer waters in all three surveys. The size composition of the salp populations suggests that the timing of intense asexual reproductive budding was earlier in warmer waters. As surface water temperatures generally decrease from north to south, and increase from spring to summer, the general spatio-temporal pattern of asexual reproduction by budding is likely to proceed from north to south as the summer season progresses.

Distribution of millipedes (Myriapoda, Diplopoda) along a forest interior - forest edge - grassland habitat complex.

PubMed

Bogyó, Dávid; Magura, Tibor; Nagy, Dávid D; Tóthmérész, Béla

2015-01-01

We studied the distribution of millipedes in a forest interior-forest edge-grassland habitat complex in the Hajdúság Landscape Protection Area (NE Hungary). The habitat types were as follows: (1) lowland oak forest, (2) forest edge with increased ground vegetation and shrub cover, and (3) mesophilous grassland. We collected millipedes by litter and soil sifting. There were overall 30 sifted litter and soil samples: 3 habitat types × 2 replicates × 5 soil and litter samples per habitats. We collected 9 millipede species; the most abundant species was Glomeristetrasticha, which was the most abundant species in the forest edge as well. The most abundant species in the forest interior was Kryphioiulusoccultus, while the most abundant species in the grassland was Megaphyllumunilineatum. Our result showed that the number of millipede species was significantly lower in the grassland than in the forest or in the edge, however there were no significant difference in the number of species between the forest interior and the forest edge. We found significantly the highest number of millipede individuals in the forest edge. There were differences in the composition of the millipede assemblages of the three habitats. The results of the DCCA showed that forest edge and forest interior habitats were clearly separated from the grassland habitats. The forest edge habitat was characterized by high air temperature, high soil moisture, high soil pH, high soil enzyme activity, high shrub cover and low canopy cover. The IndVal and the DCCA methods revealed the following character species of the forest edge habitats: Glomeristetrasticha and Leptoiuluscibdellus. Changes in millipede abundance and composition were highly correlated with the vegetation structure.

Changes in the composition of ichthyoplankton assemblage and plastic debris in mangrove creeks relative to moon phases.

PubMed

Lima, A R A; Barletta, M; Costa, M F; Ramos, J A A; Dantas, D V; Melo, P A M C; Justino, A K S; Ferreira, G V B

2016-07-01

Lunar influence on the distribution of fish larvae, zooplankton and plastic debris in mangrove creeks of the Goiana Estuary, Brazil, was studied over a lunar cycle. Cetengraulis edentulus, Anchovia clupeoides and Rhinosardinia bahiensis were the most abundant fish larvae (56·6%), independent of the moon phase. The full moon had a positive influence on the abundance of Gobionellus oceanicus, Cynoscion acoupa and Atherinella brasiliensis, and the new moon on Ulaema lefroyi. The full and new moons also influenced the number of zoeae and megalopae of Ucides cordatus, protozoeae and larvae of caridean shrimps, and the number of hard and soft plastic debris, both <5 and >5 mm. Micro and macroplastics were present in samples from all 12 creeks studied, at densities similar to the third most abundant taxon, R. bahiensis. Cetengraulis edentulus and R. bahiensis showed a strong positive correlation with the last quarter moon, when there was less zooplankton available in the creeks and higher abundance of microplastic threads. Anchovia clupeoides, Diapterus rhombeus, U. lefroyi and hard microplastics were positively associated with different moon phases, when calanoid copepods, Caridean larvae and zoeae of U. cordatus were highly available in the creeks. Cynoscion acoupa, G. oceanicus and A. brasiliensis were strongly associated with the full moon, when protozoeae of caridean shrimps and megalopae of U. cordatus were also highly available, as were hard and soft macroplastics, paint chips (<5 mm) and soft microplastics. The results reinforce the role of mangrove creeks as nursery habitats. The moon phases influenced the distribution of fish larvae species, zooplankton and plastic debris by changing their compositions and abundances in the mangrove creeks of the Goiana Estuary when under the influence of different tidal current regimes. © 2015 The Fisheries Society of the British Isles.

Distribution of oligochaetes in a stream in the Atlantic Forest in southeastern Brazil.

PubMed

Rosa, B F J V; Martins, R T; Alves, R G

2015-01-01

The oligochaetes are considered good indicators of ecological conditions and specific types of habitats. Among the factors that influence the distribution of these invertebrates are the water flow and the nature of the substrate. The aim of this study is to describe the composition and distribution of oligochaete species in a first-order stream in Atlantic Forest and try to identify if some species are associated with characteristics of particular types of habitats. In the dry season and in the rainy season, sand and litter samples in two riffle areas and two pool areas were collected in different parts along the stream using a hand net. The greatest observed richness and abundance occurred in sand in the pool, however the greatest estimated richness was obtained for litter in the pool. The Kruskal-Wallis analysis showed effect of the different types of habitat on the abundance and richness of oligochaetes. The Nonmetric Multidimensional Scaling (NMDS) and Multiresponse Permutation Procedure analysis (MRPP) indicated that the variation in the fauna composition had relation with different types of substrates. The indicator species analysis showed that Limnodrilus. hoffmeisteri was an indicator species in both the riffle sand and pool sand and Pristina americana was only an indicator in the pool sand. The high organic matter content in both sandy habitats probably favored the greater abundance of oligochaetes. The results showed that the substrate constitutes an important factor for the local distribution of these invertebrates in streams. The variation of the community structure among mesohabitats and the presence of indicator species of specific types of habitats in the stream demonstrate the importance of environmental heterogeneity for the oligochaetes fauna in forested streams.

GRS evidence and the possibility of paleooceans on Mars

USGS Publications Warehouse

Dohm, J.M.; Baker, V.R.; Boynton, W.V.; Fairen, A.G.; Ferris, J.C.; Finch, M.; Furfaro, R.; Hare, T.M.; Janes, D.M.; Kargel, J.S.; Karunatillake, S.; Keller, J.; Kerry, K.; Kim, K.J.; Komatsu, G.; Mahaney, W.C.; Schulze-Makuch, D.; Marinangeli, L.; Ori, G.G.; Ruiz, J.; Wheelock, S.J.

2009-01-01

The Gamma Ray Spectrometer (Mars Odyssey spacecraft) has revealed elemental distributions of potassium (K), thorium (Th), and iron (Fe) on Mars that require fractionation of K (and possibly Th and Fe) consistent with aqueous activity. This includes weathering, evolution of soils, and transport, sorting, and deposition, as well as with the location of first-order geomorphological demarcations identified as possible paleoocean boundaries. The element abundances occur in patterns consistent with weathering in situ and possible presence of relict or exhumed paleosols, deposition of weathered materials (salts and clastic minerals), and weathering/transport under neutral to acidic brines. The abundances are explained by hydrogeology consistent with the possibly overlapping alternatives of paleooceans and/or heterogeneous rock compositions from diverse provenances (e.g., differing igneous compositions). ?? 2008 Elsevier Ltd.

Does small-scale vertical distribution of juvenile schooling fish affect prey availability to surface-feeding seabirds in the Wadden Sea?

NASA Astrophysics Data System (ADS)

Dänhardt, Andreas; Becker, Peter H.

2011-02-01

Food availability is a key variable influencing breeding performance and demography of marine top predators. Due to methodological problems, proportionality between fish abundance and availability is often assumed without being explicitly tested. More specifically, better breeding performance of surface-feeding seabirds at times of large prey stocks suggests that prey availability is also a function of prey abundance. Using vertically resolved stow net sampling we tested whether local abundance and length composition of pelagic fish are reliable predictors of the availability of these fish to surface-feeding Common Terns ( Sterna hirundo) breeding in the German Wadden Sea. Prey fish were found to concentrate below the maximum diving depth of the terns. Individuals caught close to the surface were in most cases smaller than conspecifics caught at greater depth. Correlations between fish abundance within and out of reach of the terns appeared to be both species- and site-specific rather than driven by overall fish abundance. Vertical distribution patterns of the terns' main prey fish could be explained as anti-predator behavior, reducing prey availability to the terns. In 2007, when breeding performance was much better than in 2006, herring and whiting were much more abundant, suggesting that overall prey abundance may also increase prey availability in habitats other than those represented by the stow net sampling.

Infrared experiments for spaceborne planetary atmospheres research. Full report

NASA Technical Reports Server (NTRS)

1981-01-01

The role of infrared sensing in atmospheric science is discussed and existing infrared measurement techniques are reviewed. Proposed techniques for measuring planetary atmospheres are criticized and recommended instrument developments for spaceborne investigations are summarized for the following phenomena: global and local radiative budget; radiative flux profiles; winds; temperature; pressure; transient and marginal atmospheres; planetary rotation and global atmospheric activity; abundances of stable constituents; vertical, lateral, and temporal distribution of abundances; composition of clouds and aerosols; radiative properties of clouds and aerosols; cloud microstructure; cloud macrostructure; and non-LTE phenomena.

Spatial distribution and cellular composition of adult brain proliferative zones in the teleost, Gymnotus omarorum

PubMed Central

Olivera-Pasilio, Valentina; Peterson, Daniel A.; Castelló, María E.

2014-01-01

Proliferation of stem/progenitor cells during development provides for the generation of mature cell types in the CNS. While adult brain proliferation is highly restricted in the mammals, it is widespread in teleosts. The extent of adult neural proliferation in the weakly electric fish, Gymnotus omarorum has not yet been described. To address this, we used double thymidine analog pulse-chase labeling of proliferating cells to identify brain proliferation zones, characterize their cellular composition, and analyze the fate of newborn cells in adult G. omarorum. Short thymidine analog chase periods revealed the ubiquitous distribution of adult brain proliferation, similar to other teleosts, particularly Apteronotus leptorhynchus. Proliferating cells were abundant at the ventricular-subventricular lining of the ventricular-cisternal system, adjacent to the telencephalic subpallium, the diencephalic preoptic region and hypothalamus, and the mesencephalic tectum opticum and torus semicircularis. Extraventricular proliferation zones, located distant from the ventricular-cisternal system surface, were found in all divisions of the rombencephalic cerebellum. We also report a new adult proliferation zone at the caudal-lateral border of the electrosensory lateral line lobe. All proliferation zones showed a heterogeneous cellular composition. The use of short (24 h) and long (30 day) chase periods revealed abundant fast cycling cells (potentially intermediate amplifiers), sparse slow cycling (potentially stem) cells, cells that appear to have entered a quiescent state, and cells that might correspond to migrating newborn neural cells. Their abundance and migration distance differed among proliferation zones: greater numbers and longer range and/or pace of migrating cells were associated with subpallial and cerebellar proliferation zones. PMID:25249943

Antibiotic resistome in landfill leachate from different cities of China deciphered by metagenomic analysis.

PubMed

Zhao, Renxin; Feng, Jie; Yin, Xiaole; Liu, Jie; Fu, Wenjie; Berendonk, Thomas U; Zhang, Tong; Li, Xiaoyan; Li, Bing

2018-05-01

High throughput sequencing-based metagenomic analysis and network analysis were applied to investigate the broad-spectrum profiles of ARGs in landfill leachate from 12 cities in China. In total, 526 ARG subtypes belonging to 21 ARG types were detected with abundances ranging from 1.1 × 10 -6 to 2.09 × 10 -1 copy of ARG/copy of 16S rRNA gene. 68 ARG subtypes that accounted for 73.4%-93.4% of the total ARG abundances were shared by all leachate samples. The four most abundant ARGs, sul1, sul2, aadA and bacA can be served as ARG indicators to quantitatively predict the total abundances by linear functions (r 2  = 0.577-0.819, P < 0.001). No distinct regional distribution pattern of the ARGs was observed among different cities in China, while the ARG compositions of the leachate were clearly distinct from those of other environmental sample types. Nearly 90% ARG subtypes in the anaerobic digestion sludge from sewage treatment plants (STPADS) were shared by the leachate and the abundances of leachate and STPADS ARGs generalists accounted for 84.5% and 87.7% of total abundances in these two types of anaerobic samples, respectively. Furthermore, Procrustes analysis suggested that microbial community composition might be the determining factor of ARG compositions in landfill leachate. ARGs within the same type or among the different types showed higher incidences of non-random co-occurrence and 17 genera might be potential hosts of multiple ARGs. This study highlighted that landfill leachate is an important reservoir of various ARGs and provided a useful reference for the surveillance and risk management of ARGs in landfill environments. Copyright © 2018 Elsevier Ltd. All rights reserved.

The use of CPR data in fisheries research [review article

NASA Astrophysics Data System (ADS)

Corten, A.; Lindley, J. A.

2003-08-01

The Continuous Plankton Recorder (CPR) survey was initiated partly to contribute to our understanding of the variability of fish stocks and as a potential method for predicting fish distributions from the abundance and composition of the plankton. The latter objective has been superseded by technological developments in fish detection, but the former has been the subject of continuing, and in recent years expanding use of the CPR data. Examples are presented of application of the data to studies on North Sea herring, cod, mackerel, blue whiting and redfish as well as more general plankton studies relevant to fisheries research. Variations in the migration patterns of herring as well as recruitment have been related to abundances and species composition of the plankton in the CPR survey. Extensive use has been made of the CPR data in relation to cod, particularly in the development and testing of the ‘match-mismatch’ hypothesis. Advection of sufficient numbers of Calanus from the core oceanic areas of its distribution into the areas where the cod stocks occur may partly determine the success of those stocks. The analysis of the distribution and abundances of mackerel larvae in the CPR survey have shown contrasting variations between the North Sea and Celtic Sea. The expansion of the horse mackerel fishery in the north-eastern North Sea since 1987 has been related to physical events and a ‘regime shift’ in the plankton, described from CPR data. The oceanic spawning areas of the blue whiting and redfish were highlighted by the expansion of the CPR survey into the north-eastern and north-western Atlantic respectively. These results helped to focus the attention of fisheries scientists on stocks that have subsequently become the targets for commercial exploitation. The results of the CPR survey, particularly those on Calanusfinmarchicus, the phytoplankton standing stock as measured by the CPR colour index, the overall patterns of trends in plankton abundance and distributions of indicator species have been used by fisheries scientists to interpret variations in fish stocks. Generally the CPR data can be used to determine whether changes in the distributions and growth rates of fish have resulted from changes in planktonic food, changes in strength of ocean currents and distribution of water masses and to identify trends in larval abundances. With the tightening regulation of fisheries to reduce overfishing, global climate change and changing anthropogenic inputs into the sea, the unique source of information on unexploited populations in the long-term time series of the CPR survey will be of increasing value to fisheries scientists in the study of natural variability.

Sm-Nd and Rb-Sr Ages for MIL 05035: Implications for Surface and Mantle Sources

NASA Technical Reports Server (NTRS)

Nyquist, L. E.; Shih, C-Y.; Reese, Y. D.

2007-01-01

The Sm-Nd and Rb-Sr ages and also the initial Nd and Sr isotopic compositions of MIL 05035 are the same as those of A-881757. Comparing the radiometric ages of these meteorites to lunar surface ages as modeled from crater size-frequency distributions as well as the TiO2 abundances and initial Sr-isotopic compositions of other basalts places their likely place of origin as within the Australe or Humboldtianum basins. If so, a fundamental west-east lunar asymmetry in compositional and isotopic parameters that likely is due to the PKT is implied.

Mössbauer study of oxide phase distributions in rust formed on steel constructions near the Black Sea in Sochi

NASA Astrophysics Data System (ADS)

Filippov, V. P.; Lauer, Yu. A.; Goloborodko, P. G.; Polyakov, A. M.

2016-12-01

The phase composition of the intermediate oxide layers formed on elements of steel structures at different positions relative to the sea water of the Black Sea near Sochi are investigated. The differences of the phase composition of these oxide layers are shown, depending on the location of the design details in relation to the sea and the abundancies of certain types of oxides in the studied layers are discussed.

XAFS STUDIES OF NICKEL AND SULFUR SPECIATION IN RESIDENTIAL OIL FLY-ASH PARTICULATE MATTERS (ROFA PM)

EPA Science Inventory

XAFS spectroscopy has been employed to evaluate the effect of fuel compositions and combustion conditions on the amount, form, and distribution of sulfur and nickel in size-fractionated ROFA PM. Analysis of S K-edge XANES establish that sulfate is abundant in all PM. However, dep...

Composition and seasonal phenology of a nonindigenous root-feeding weevil (Coleoptera: Curculionidae) complex in northern hardwood forests in the Great Lakes Region

Treesearch

R. A. Pinski; W. J. Mattson; K. F. Raffa

2005-01-01

Phyllobius oblongus (L.), Polydrusus sericeus (Schaller), and Sciaphilus asperatus (Bonsdorff) comprise a complex of nonindigenous root-feeding weevils in northern hardwood forests of the Great Lakes region. Little is known about their detailed biology, seasonality, relative abundance, and distribution patterns....

Environmental factors affecting the spatial distribution and trophic interactions of arthropod communities at a bioenergy farm in the Southeastern Plains, USA

USDA-ARS?s Scientific Manuscript database

The abundance and composition of arthropod communities in agricultural landscapes vary across space and time, responding to environmental features, resources and behavioral cues. As “second-generation” bioenergy feedstocks continue to develop, knowledge is needed about the broader scale ecological i...

Distribution, Community Composition, and Potential Metabolic Activity of Bacterioplankton in an Urbanized Mediterranean Sea Coastal Zone.

PubMed

Richa, Kumari; Balestra, Cecilia; Piredda, Roberta; Benes, Vladimir; Borra, Marco; Passarelli, Augusto; Margiotta, Francesca; Saggiomo, Maria; Biffali, Elio; Sanges, Remo; Scanlan, David J; Casotti, Raffaella

2017-09-01

Bacterioplankton are fundamental components of marine ecosystems and influence the entire biosphere by contributing to the global biogeochemical cycles of key elements. Yet, there is a significant gap in knowledge about their diversity and specific activities, as well as environmental factors that shape their community composition and function. Here, the distribution and diversity of surface bacterioplankton along the coastline of the Gulf of Naples (GON; Italy) were investigated using flow cytometry coupled with high-throughput sequencing of the 16S rRNA gene. Heterotrophic bacteria numerically dominated the bacterioplankton and comprised mainly Alphaproteobacteria , Gammaproteobacteria , and Bacteroidetes Distinct communities occupied river-influenced, coastal, and offshore sites, as indicated by Bray-Curtis dissimilarity, distance metric (UniFrac), linear discriminant analysis effect size (LEfSe), and multivariate analyses. The heterogeneity in diversity and community composition was mainly due to salinity and changes in environmental conditions across sites, as defined by nutrient and chlorophyll a concentrations. Bacterioplankton communities were composed of a few dominant taxa and a large proportion (92%) of rare taxa (here defined as operational taxonomic units [OTUs] accounting for <0.1% of the total sequence abundance), the majority of which were unique to each site. The relationship between 16S rRNA and the 16S rRNA gene, i.e., between potential metabolic activity and abundance, was positive for the whole community. However, analysis of individual OTUs revealed high rRNA-to-rRNA gene ratios for most (71.6% ± 16.7%) of the rare taxa, suggesting that these low-abundance organisms were potentially active and hence might be playing an important role in ecosystem diversity and functioning in the GON. IMPORTANCE The study of bacterioplankton in coastal zones is of critical importance, considering that these areas are highly productive and anthropogenically impacted. Their richness and evenness, as well as their potential activity, are very important to assess ecosystem health and functioning. Here, we investigated bacterial distribution, community composition, and potential metabolic activity in the GON, which is an ideal test site due to its heterogeneous environment characterized by a complex hydrodynamics and terrestrial inputs of varied quantities and quality. Our study demonstrates that bacterioplankton communities in this region are highly diverse and strongly regulated by a combination of different environmental factors leading to their heterogeneous distribution, with the rare taxa contributing to a major proportion of diversity and shifts in community composition and potentially holding a key role in ecosystem functioning. Copyright © 2017 American Society for Microbiology.

Distribution, Community Composition, and Potential Metabolic Activity of Bacterioplankton in an Urbanized Mediterranean Sea Coastal Zone

PubMed Central

Richa, Kumari; Balestra, Cecilia; Piredda, Roberta; Benes, Vladimir; Borra, Marco; Passarelli, Augusto; Margiotta, Francesca; Saggiomo, Maria; Biffali, Elio; Sanges, Remo; Scanlan, David J.

2017-01-01

ABSTRACT Bacterioplankton are fundamental components of marine ecosystems and influence the entire biosphere by contributing to the global biogeochemical cycles of key elements. Yet, there is a significant gap in knowledge about their diversity and specific activities, as well as environmental factors that shape their community composition and function. Here, the distribution and diversity of surface bacterioplankton along the coastline of the Gulf of Naples (GON; Italy) were investigated using flow cytometry coupled with high-throughput sequencing of the 16S rRNA gene. Heterotrophic bacteria numerically dominated the bacterioplankton and comprised mainly Alphaproteobacteria, Gammaproteobacteria, and Bacteroidetes. Distinct communities occupied river-influenced, coastal, and offshore sites, as indicated by Bray-Curtis dissimilarity, distance metric (UniFrac), linear discriminant analysis effect size (LEfSe), and multivariate analyses. The heterogeneity in diversity and community composition was mainly due to salinity and changes in environmental conditions across sites, as defined by nutrient and chlorophyll a concentrations. Bacterioplankton communities were composed of a few dominant taxa and a large proportion (92%) of rare taxa (here defined as operational taxonomic units [OTUs] accounting for <0.1% of the total sequence abundance), the majority of which were unique to each site. The relationship between 16S rRNA and the 16S rRNA gene, i.e., between potential metabolic activity and abundance, was positive for the whole community. However, analysis of individual OTUs revealed high rRNA-to-rRNA gene ratios for most (71.6% ± 16.7%) of the rare taxa, suggesting that these low-abundance organisms were potentially active and hence might be playing an important role in ecosystem diversity and functioning in the GON. IMPORTANCE The study of bacterioplankton in coastal zones is of critical importance, considering that these areas are highly productive and anthropogenically impacted. Their richness and evenness, as well as their potential activity, are very important to assess ecosystem health and functioning. Here, we investigated bacterial distribution, community composition, and potential metabolic activity in the GON, which is an ideal test site due to its heterogeneous environment characterized by a complex hydrodynamics and terrestrial inputs of varied quantities and quality. Our study demonstrates that bacterioplankton communities in this region are highly diverse and strongly regulated by a combination of different environmental factors leading to their heterogeneous distribution, with the rare taxa contributing to a major proportion of diversity and shifts in community composition and potentially holding a key role in ecosystem functioning. PMID:28667110

Temporal and spatial distribution of the meiobenthic community in Daya Bay, South China Sea

NASA Astrophysics Data System (ADS)

Tang, L.; Li, H. X.; Yan, Y.

2012-04-01

Spatial and temporal biodiversity patterns of the meiobenthos were studied for the first time in Daya Bay, which is a tropical semi-enclosed basin located in the South China Sea. The abundance, biomass, and composition of the meiobenthos and the basic environmental factors in the bay were investigated. The following 19 taxonomic groups were represented in the meiofauna: Nematoda, Copepoda, Polychaeta, Oligochaeta, Kinorhyncha, Gastrotricha, Ostracoda, Bivalvia, Turbellaria, Nemertinea, Sipuncula, Hydroida, Amphipoda, Cumacea, Halacaroidea, Priapulida, Echinodermata, Tanaidacea, and Rotifera. Total abundance and biomass of the meiobenthos showed great spatial and temporal variation, with mean values of 993.57 ± 455.36 ind cm-2 and 690.51 ± 210.64 μg 10 cm-2, respectively. Nematodes constituted 95.60 % of the total abundance and thus had the greatest effect on meiofauna quantity and distribution, followed by copepods (1.55 %) and polychaetes (1.39 %). Meiobenthos abundance was significantly negatively correlated with water depth at stations (r=-0.747, P<0.05) and significantly negatively correlated with silt-clay content (r=-0.516, P<0.01) and medium diameter (r=-0.499, P<0.01) of the sediment. Similar results were found for correlations of biomass and abundance of nematodes with environmental parameters. Polychaete abundance was positively correlated with the bottom water temperature (r=0.456, P<0.01). Meiobenthos abundance differed significantly among seasons (P<0.05), although no significant difference among stations and the interaction of station × season was detected by two-way ANOVA. In terms of vertical distribution, most of the meiobenthos was found in the surface layer of sediment. This pattern was apparent for nematodes and copepods, but a vertical distribution pattern for polychaetes was not as obvious. Based on the biotic indices and analyses of their correlations and variance, the diversity of this community was likely to be influenced by environmental variations.

Distributions of ectomycorrhizal and foliar endophytic fungal communities associated with Pinus ponderosa along a spatially constrained elevation gradient.

PubMed

Bowman, Elizabeth A; Arnold, A Elizabeth

2018-04-01

Understanding distributions of plant-symbiotic fungi is important for projecting responses to environmental change. Many coniferous trees host ectomycorrhizal fungi (EM) in association with roots and foliar endophytic fungi (FE) in leaves. We examined how EM and FE associated with Pinus ponderosa each vary in abundance, diversity, and community structure over a spatially constrained elevation gradient that traverses four plant communities, 4°C in mean annual temperature, and 15 cm in mean annual precipitation. We sampled 63 individuals of Pinus ponderosa in 10 sites along a 635 m elevation gradient that encompassed a geographic distance of 9.8 km. We used standard methods to characterize each fungal group (amplified and sequenced EM from root tips; isolated and sequenced FE from leaves). Abundance and diversity of EM were similar across sites, but community composition and distributions of the most common EM differed with elevation (i.e., with climate, soil chemistry, and plant communities). Abundance and composition of FE did not differ with elevation, but diversity peaked in mid-to-high elevations. Our results suggest relatively tight linkages between EM and climate, soil chemistry, and plant communities. That FE appear less linked with these factors may speak to limitations of a culture-based approach, but more likely reflects the small spatial scale encompassed by our study. Future work should consider comparable methods for characterizing these functional groups, and additional transects to understand relationships of EM and FE to environmental factors that are likely to shift as a function of climate change. © 2018 Botanical Society of America.

Using the Fe/Mn Ratio of FeO-Rich Olivine In WILD 2, Chondrite Matrix, and Type IIA Chondrules to Disentangle Their Histories

NASA Technical Reports Server (NTRS)

Frank, David R.; Le, L.; Zolensky, M. E.

2012-01-01

The Stardust Mission returned a large abundance of impactors from Comet 81P/Wild2 in the 5-30 m range. The preliminary examination of just a limited number of these particles showed that the collection captured abundant crystalline grains with a diverse mineralogy [1,2]. Many of these grains resemble those found in chondrite matrix and even contain fragments of chondrules and CAIs [1-3]. In particular, the olivine found in Wild 2 exhibits a wide compositional range (Fa0-97) with minor element abundances similar to the matrix olivine found in many carbonaceous chondrites (CCs) and unequilibrated ordinary chondrites (UOCs). Despite the wide distribution of Fa content, the olivine found in the matrices of CCs, UOCs, and Wild 2 can be roughly lumped into two types based solely on fayalite content. In fact, in some cases, a distinct bi-modal distribution is observed.

Compositional structure of the asteroid belt

NASA Technical Reports Server (NTRS)

Gradie, J.; Tedesco, E.

1982-01-01

A variety of observations, mainly albedos derived from 10 and 20 micron radiometry and eight-filter broadband spectrophotometry, were used to show that the asteroid belt is highly structured in composition. The bias-corrected distribution from 1.8 to 5.2 A.U. of the previously defined compositional types C,S,E,R, and M, plus type D and the newly described types F and P, are reported on. In terms of the relative abundances of the types discussed, the asteroid belt appears to be composed of at least six major compositionally distinct regions. The inferred composition of the asteroids in each semimajor axis region is consistent with the theory that the asteroids accreted from the solar nebula at or near their present location.

A microbiology-based multi-parametric approach towards assessing biological stability in drinking water distribution networks.

PubMed

Lautenschlager, Karin; Hwang, Chiachi; Liu, Wen-Tso; Boon, Nico; Köster, Oliver; Vrouwenvelder, Hans; Egli, Thomas; Hammes, Frederik

2013-06-01

Biological stability of drinking water implies that the concentration of bacterial cells and composition of the microbial community should not change during distribution. In this study, we used a multi-parametric approach that encompasses different aspects of microbial water quality including microbial growth potential, microbial abundance, and microbial community composition, to monitor biological stability in drinking water of the non-chlorinated distribution system of Zürich. Drinking water was collected directly after treatment from the reservoir and in the network at several locations with varied average hydraulic retention times (6-52 h) over a period of four months, with a single repetition two years later. Total cell concentrations (TCC) measured with flow cytometry remained remarkably stable at 9.5 (± 0.6) × 10(4) cells/ml from water in the reservoir throughout most of the distribution network, and during the whole time period. Conventional microbial methods like heterotrophic plate counts, the concentration of adenosine tri-phosphate, total organic carbon and assimilable organic carbon remained also constant. Samples taken two years apart showed more than 80% similarity for the microbial communities analysed with denaturing gradient gel electrophoresis and 454 pyrosequencing. Only the two sampling locations with the longest water retention times were the exceptions and, so far for unknown reasons, recorded a slight but significantly higher TCC (1.3 (± 0.1) × 10(5) cells/ml) compared to the other locations. This small change in microbial abundance detected by flow cytometry was also clearly observed in a shift in the microbial community profiles to a higher abundance of members from the Comamonadaceae (60% vs. 2% at other locations). Conventional microbial detection methods were not able to detect changes as observed with flow cytometric cell counts and microbial community analysis. Our findings demonstrate that the multi-parametric approach used provides a powerful and sensitive tool to assess and evaluate biological stability and microbial processes in drinking water distribution systems. Copyright © 2013 Elsevier Ltd. All rights reserved.

Composition and daytime vertical distribution of the ichthyoplankton assemblage in the Central Cantabrian Sea shelf, during summer: An Eulerian study

NASA Astrophysics Data System (ADS)

Rodriguez, J. M.; Gonzalez-Pola, C.; Lopez-Urrutia, A.; Nogueira, E.

2011-09-01

During summer, wind driven coastal upwelling dominates in the Central Cantabrian Sea (southern Bay of Biscay). Nevertheless, atmospheric forcing is highly variable and wind pulses may cause noticeable and fast hydrographic responses in the shelf region. In this paper, the composition and vertical distribution of the summer ichthyoplankton assemblage during the daytime at a fixed station, located on the Central Cantabrian Sea shelf, are documented. Also, the impact of a short-time scale hydrographic event on the abundance and structure of the larval fish assemblage is examined. Significant small-scale temporal hydrographic variability was observed. Currents showed changes in speed and direction and significant changes in thermocline depth were also observed. A total of 34 taxa of fish larvae were identified. Engraulis encrasicolus eggs and larvae of the shelf-dwelling species Trachurus trachurus, Capros aper and E. encrasicolus dominated the ichthyoplankton assemblage. The distribution of E. encrasicolus eggs and fish larvae was vertically structured. E. encrasicolus egg concentration increased exponentially towards the surface. Fish larvae showed a subsurface peak of concentration and their vertical distribution was not conditioned by thermocline depths. The short term hydrographic event did not affect the vertical distribution of fish larvae but it accounted for significant temporal changes in larval fish assemblage structure and abundance. Results suggest that temperature and light intensity are important factors in the vertical distribution of fish larvae. They also indicate that the temporal monitoring of the larval fish assemblage in this region requires multiple sampling sites.

A Gaussian Mixture Model Representation of Endmember Variability in Hyperspectral Unmixing

NASA Astrophysics Data System (ADS)

Zhou, Yuan; Rangarajan, Anand; Gader, Paul D.

2018-05-01

Hyperspectral unmixing while considering endmember variability is usually performed by the normal compositional model (NCM), where the endmembers for each pixel are assumed to be sampled from unimodal Gaussian distributions. However, in real applications, the distribution of a material is often not Gaussian. In this paper, we use Gaussian mixture models (GMM) to represent the endmember variability. We show, given the GMM starting premise, that the distribution of the mixed pixel (under the linear mixing model) is also a GMM (and this is shown from two perspectives). The first perspective originates from the random variable transformation and gives a conditional density function of the pixels given the abundances and GMM parameters. With proper smoothness and sparsity prior constraints on the abundances, the conditional density function leads to a standard maximum a posteriori (MAP) problem which can be solved using generalized expectation maximization. The second perspective originates from marginalizing over the endmembers in the GMM, which provides us with a foundation to solve for the endmembers at each pixel. Hence, our model can not only estimate the abundances and distribution parameters, but also the distinct endmember set for each pixel. We tested the proposed GMM on several synthetic and real datasets, and showed its potential by comparing it to current popular methods.

Imaging of the CO snow line in a solar nebula analog.

PubMed

Qi, Chunhua; Öberg, Karin I; Wilner, David J; D'Alessio, Paola; Bergin, Edwin; Andrews, Sean M; Blake, Geoffrey A; Hogerheijde, Michiel R; van Dishoeck, Ewine F

2013-08-09

Planets form in the disks around young stars. Their formation efficiency and composition are intimately linked to the protoplanetary disk locations of "snow lines" of abundant volatiles. We present chemical imaging of the carbon monoxide (CO) snow line in the disk around TW Hya, an analog of the solar nebula, using high spatial and spectral resolution Atacama Large Millimeter/Submillimeter Array observations of diazenylium (N2H(+)), a reactive ion present in large abundance only where CO is frozen out. The N2H(+) emission is distributed in a large ring, with an inner radius that matches CO snow line model predictions. The extracted CO snow line radius of ~30 astronomical units helps to assess models of the formation dynamics of the solar system, when combined with measurements of the bulk composition of planets and comets.

The distribution of ichthyoplankton in thermal and non-thermal creeks and swamps on the Savannah River Plant, February-July 1985

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paller, M.H.; Saul, B.M.; Hughes, D.W.

1986-01-01

The report deals with the distribution of ichthyoplankton in the Savannah River tributary streams and associated swamps located on the SRP during the 1985 spawning season (February-July). The 1985 sampling program was a continuation of the 1984 program and, except for the addition of seven sampling stations and minor methodological changes, incorporated the same sampling sites and procedures. The streams under study were Upper Three Runs Creek, Beaver Dam Creek, Four Mile Creek, Pen Branch, Steel Creek, Meyer's Branch and Lower Three Runs Creek. The objectives were to determine: (1) the density, distribution and species composition of ichthyoplankton at samplemore » sites in the creeks and swamps of the SRP; (2) how ichthyoplankton in SRP creeks and swamps is distributed in relation to habitat and temperature; (3) the effects of elevated temperatures on ichthyoplankton distribution and abundance and on the time of spawning; and (4) the magnitude of yearly variations in ichthyoplankton abundance in the creeks and swamps of the SRP and the reasons for these variations.« less

Phorbin steryl esters in Black Sea sediment traps and sediments: A preliminary evaluation of their paleooceanographic potential

NASA Astrophysics Data System (ADS)

King, Linda L.; Repeta, Daniel J.

1994-10-01

The distributions of pyropheophorbide- a steryl esters in one-year deployments of sediment traps at two locations in the Black Sea are described. In nearly all our trap samples, phorbin steryl esters (PSEs) contribute a significant portion of the total phorbin flux. The relative abundances of sterols esterified to pyropheophorbide- a varied throughout the year, and we suggest these changes result from the observed seasonal variation of phytoplankton species in the overlying water column. The distribution of free sterols in a one-year composite sediment trap sample closely approximates the distribution of sterols derived from the hydrolysis of sedimentary PSEs collected at an adjacent site. From these results, we suggest that the distribution of sedimentary PSE sterols provides a record of sterol deposition to the sediment-water interface. Esterification of sterols to pyropheophorbide- a apparently prevents the preferential removal of 4-desmethyl sterols relative to 4-methyl sterols, and the reduction of stenols to stanols during degradation. Analysis of PSEs in a gravity core covering the last 8-10 Kyr shows that the abundance and distribution of PSEs change with downcore variations in sedimentology. Detailed analysis of PSEs in sediments may, therefore, provide a means to evaluate paleooceanographic changes in phytoplankton community structure and sterol early diagenesis. The synthesis, NMR, CI-MS, and visible spectroscopic properties of four abundant PSEs found in the Black Sea are also described.

Comparing Amino Acid Abundances and Distributions Across Carbonaceous Chondrite Groups

NASA Technical Reports Server (NTRS)

Burton, Aaron S.; Callahan, Michael P.; Glavin, Daniel P.; Elsila, Jamie E.; Dworkin, Jason P.

2012-01-01

Meteorites are grouped according to bulk properties such as chemical composition and mineralogy. These parameters can vary significantly among the different carbonaceous chondrite groups (CI, CM, CO, CR, CH, CB, CV and CK). We have determined the amino acid abundances of more than 30 primary amino acids in meteorites from each of the eight groups, revealing several interesting trends. There are noticeable differences in the structural diversity and overall abundances of amino acids between meteorites from the different chondrite groups. Because meteorites may have been an important source of amino acids to the prebiotic Earth and these organic compounds are essential for life as we know it, the observed variations of these molecules may have been important for the origins of life.

Vegetation-environment relations of the Chisos Mountains, Big Bend National Park, Texas

Treesearch

Helen M. Poulos; Ann E. Camp

2005-01-01

The Sky Island Archipelagos of the Sierra Madre Oriental and Occidental contain a unique array of endemic flora and fauna. Plant species composition in these elevationally restricted forests is thought to vary in relation to environmental gradients. This study quantifies plant population abundance and spatial distribution patterns in pine-oak woodlands of Big Bend...

RELATIVE INFLUENCE OF HYPOXIA, ANOXIA, AND ASSOCIATED ENVIRONMENTAL FACTORS AS DETERMINANTS OF MACROBENTHIC COMMUNITY STRUCTURE IN A NORTHERN GULF OF MEXICO ESTUARY

EPA Science Inventory

Seasonal patterns (i.e., December 1986, and April and October 1987) in benthic macroinfaunal abundance, distribution, and taxa composition at 19 sites in Perdido Bay, AL/FL, are evaluated to assess the relative importance of environmental factors as determinants of community stru...

Nonnative invasive plants of Pacific coast forests: a field guide for identification

Treesearch

Andrew N. Gray; Katie Barndt; Sarah H. Reichard

2011-01-01

Nonnative plants affect the composition and function of natural and managed ecosystems and have large economic effects through lost or degraded land use and eradication costs. In spite of their importance, very little comprehensive information on the abundance, distribution, and impact of nonnative invasive plants is available. The objective of this study was to...

Development of DNA-based Identification methods to track the species composition of fish larvae within nearshore areas of the Great Lakes

EPA Science Inventory

The ability to track the identity and abundance of larval fish, which are ubiquitous during spawning season, may lead to a greater understanding of fish species distributions in Great Lakes nearshore areas including early-detection of invasive fish species before they become esta...

Sampling and estimation procedures for the vegetation diversity and structure indicator

Treesearch

Bethany K. Schulz; William A. Bechtold; Stanley J. Zarnoch

2009-01-01

The Vegetation Diversity and Structure Indicator (VEG) is an extensive inventory of vascular plants in the forests of the United States. The VEG indicator provides baseline data to assess trends in forest vascular plant species richness and composition, and the relative abundance and spatial distribution of those species, including invasive and introduced species. The...

On the e-process - Its components and their neutron excesses. [solar abundance calculations in gamma ray astronomy

NASA Technical Reports Server (NTRS)

Hainebach, K. L.; Clayton, D. D.; Arnett, W. D.; Woosley, S. E.

1974-01-01

The pattern of abundances within the iron-abundance peak of the solar system is analyzed for various Cr, Fe, and Ni abundances, and a method is developed for finding the best fit to a given set of abundances with a chosen number of zones, i.e., mass contributions characterized by differing values of eta. This material can be synthesized by a superposition of e-process compositions in a low-eta region (eta = 0.003) and a high-eta region (eta = 0.065 -0.080) with at least 85% coming from the low-eta region. Addition of a third eta zone is unproductive. The applicability of the particle-poor freeze out is discussed in the light of these abundances, and the results of employing different numbers and types of zones are interpreted as an indication of the relative abundances themselves. Ejection of the low-eta zones is of great interest in gamma-ray astronomy and for empirical testing of theories of nucleosynthesis. The distribution of high zones should give important information about the formation of collapsed remnants.

Distribution of ether lipids and composition of the archaeal community in terrestrial geothermal springs: impact of environmental variables.

PubMed

Xie, Wei; Zhang, Chuanlun L; Wang, Jinxiang; Chen, Yufei; Zhu, Yuanqing; de la Torre, José R; Dong, Hailiang; Hartnett, Hilairy E; Hedlund, Brian P; Klotz, Martin G

2015-05-01

Archaea can respond to changes in the environment by altering the composition of their membrane lipids, for example, by modification of the abundance and composition of glycerol dialkyl glycerol tetraethers (GDGTs). Here, we investigated the abundance and proportions of polar GDGTs (P-GDGTs) and core GDGTs (C-GDGTs) sampled in different seasons from Tengchong hot springs (Yunnan, China), which encompassed a pH range of 2.5-10.1 and a temperature range of 43.7-93.6°C. The phylogenetic composition of the archaeal community (reanalysed from published work) divided the Archaea in spring sediment samples into three major groups that corresponded with spring pH: acidic, circumneutral and alkaline. Cluster analysis showed correlation between spring pH and the composition of P- and C-GDGTs and archaeal 16S rRNA genes, indicating an intimate link between resident Archaea and the distribution of P- and C-GDGTs in Tengchong hot springs. The distribution of GDGTs in Tengchong springs was also significantly affected by temperature; however, the relationship was weaker than with pH. Analysis of published datasets including samples from Tibet, Yellowstone and the US Great Basin hot springs revealed a similar relationship between pH and GDGT content. Specifically, low pH springs had higher concentrations of GDGTs with high numbers of cyclopentyl rings than neutral and alkaline springs, which is consistent with the predominance of high cyclopentyl ring-characterized Sulfolobales and Thermoplasmatales present in some of the low pH springs. Our study suggests that the resident Archaea in these hot springs are acclimated if not adapted to low pH by their genetic capacity to effect the packing density of their membranes by increasing cyclopentyl rings in GDGTs at the rank of community. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

Species diversity of edaphic mites (Acari: Oribatida) and effects of topography, soil properties and litter gradients on their qualitative and quantitative composition in 64 km² of forest in Amazonia.

PubMed

de Moraes, Jamile; Franklin, Elizabeth; de Morais, José Wellington; de Souza, Jorge Luiz Pereira

2011-09-01

Small-scale spatial distribution of oribatid mites has been investigated in Amazonia. In addition, medium- and large-scale studies are needed to establish the utility of these mites in detecting natural environmental variability, and to distinguish this variability from anthropogenic impacts. We are expanding the knowledge about oribatid mites in a wet upland forest reserve, and investigate whether a standardized and integrated protocol is an efficient way to assess the effects of environmental variables on their qualitative and quantitative composition on a large spatial scale inside an ecological reserve in Central Amazonia, Brazil. Samples for Berlese-Tullgren extraction were taken in 72 plots of 250 × 6 m distributed over 64 km(2). In total 3,182 adult individuals, from 82 species and 79 morphospecies were recorded, expanding the number of species known in the reserve from 149 to 254. Galumna, Rostrozetes and Scheloribates were the most speciose genera, and 57 species were rare. Rostrozetes ovulum, Pergalumna passimpuctata and Archegozetes longisetosus were the most abundant species, and the first two were the most frequent. Species number and abundance were not correlated with clay content, slope, pH and litter quantity. However, Principal Coordinate Analysis indicated that as the percentage of clay content, litter quantity and pH changed, the oribatid mite qualitative and quantitative composition also changed. The standardized protocol effectively captured the diversity, as we collected one of the largest registers of oribatid mites' species for Amazonia. Moreover, biological and ecological data were integrated to capture the effects of environmental variables accounting for their diversity and abundance.

Overview of the Distribution, Habitat Association and Impact of Exotic Ants on Native Ant Communities in New Caledonia

PubMed Central

Berman, Maïa; Andersen, Alan N.; Hély, Christelle; Gaucherel, Cédric

2013-01-01

Ants are among the most ubiquitous and harmful invaders worldwide, but there are few regional studies of their relationships with habitat and native ant communities. New Caledonia has a unique and diverse ant fauna that is threatened by exotic ants, but broad-scale patterns of exotic and native ant community composition in relation to habitat remain poorly documented. We conducted a systematic baiting survey of 56 sites representing the main New Caledonian habitat types: rainforest on ultramafic soils (15 sites), rainforest on volcano-sedimentary soils (13), maquis shrubland (15), Melaleuca-dominated savannas (11) and Acacia spirorbis thickets (2). We collected a total of 49 species, 13 of which were exotic. Only five sites were free of exotic species, and these were all rainforest. The five most abundant exotic species differed in their habitat association, with Pheidole megacephala associated with rainforests, Brachymyrmex cf. obscurior with savanna, and Wasmannia auropunctata and Nylanderia vaga present in most habitats. Anoplolepis gracilipes occurred primarily in maquis-shrubland, which contrasts with its rainforest affinity elsewhere. Multivariate analysis of overall ant species composition showed strong differentiation of sites according to the distribution of exotic species, and these patterns were maintained at the genus and functional group levels. Native ant composition differed at invaded versus uninvaded rainforest sites, in the absence of differences in habitat variables. Generalised Myrmicinae and Forest Opportunists were particularly affected by invasion. There was a strong negative relationship between the abundance of W. auropunctata and native ant abundance and richness. This emphasizes that, in addition to dominating many ant communities numerically, some exotic species, and in particular W. auropunctata, have a marked impact on native ant communities. PMID:23840639

Summer and winter living coccolithophores in the Yellow Sea and the East China Sea

NASA Astrophysics Data System (ADS)

Gu, X. Y.; Feng, Y. Y.; Jin, S. F.; Jiang, W. S.; Jin, H. Y.; Chen, J. F.; Sun, J.

2013-05-01

To date, very little information on living coccolithophores species composition and distribution, especially the vertical profile has been reported around the world. This paper tries to fill this gap by descripting on living coccolithophores (LCs) distribution in the Yellow Sea and the East China Sea in summer and winter time in detail, and its relationship among enviromental factors by canonical correspondence analysis (CCA). We carried out the investigations on LC distribution in the Yellow Sea and the East China Sea in July and December 2011. 210 samples from different depths were collected from 44 stations in summer and 217 samples were collected from 45 stations in winter. Totally 20 taxa belonging to coccolithophyceae were identified using a polarized microscope at the 1000 × magnification. The dominant species of the two seasons were Gephyrocapsa oceanica, Emiliania huxleyi, Helicosphaera carteri, and Algirosphaera robusta. In summer the abundance of cells and coccoliths ranged 0 ~ 176.40 cells mL-1, and 0 ~ 2144.98 coccoliths mL-1, with the average values of 8.45 cells mL-1, and 265.42 coccoliths mL-1, respectively. And in winter the abundance of cells and coccoliths ranged 0 ~ 71.66 cells mL-1, and 0 ~ 4698.99 coccoliths mL-1, with the average values of 13.91 cells mL-1 and 872.56 coccoliths mL-1 respectively. In summer the LCs in surface layer were mainly observed on the coastal belt and southern part of the survey area. The highest abundance was found at the bloom station. In winter the LCs in surface layer had high value in the continental shelf area of section P. The comparison among section A, section F, section P and section E indicated lower species diversity and less abundance in the Yellow Sea than those of the East China Sea in both seasons. Temperature and the nitrate concentration may be the major environmental factors controlling the distribution and species composition of LCs in the studying area based on CCA.

Equilibrium and non-equilibrium controls on the abundances of clumped isotopologues of methane during thermogenic formation in laboratory experiments: Implications for the chemistry of pyrolysis and the origins of natural gases

NASA Astrophysics Data System (ADS)

Shuai, Yanhua; Douglas, Peter M. J.; Zhang, Shuichang; Stolper, Daniel A.; Ellis, Geoffrey S.; Lawson, Michael; Lewan, Michael D.; Formolo, Michael; Mi, Jingkui; He, Kun; Hu, Guoyi; Eiler, John M.

2018-02-01

Multiply isotopically substituted molecules ('clumped' isotopologues) can be used as geothermometers because their proportions at isotopic equilibrium relative to a random distribution of isotopes amongst all isotopologues are functions of temperature. This has allowed measurements of clumped-isotope abundances to be used to constrain formation temperatures of several natural materials. However, kinetic processes during generation, modification, or transport of natural materials can also affect their clumped-isotope compositions. Herein, we show that methane generated experimentally by closed-system hydrous pyrolysis of shale or nonhydrous pyrolysis of coal yields clumped-isotope compositions consistent with an equilibrium distribution of isotopologues under some experimental conditions (temperature-time conditions corresponding to 'low,' 'mature,' and 'over-mature' stages of catagenesis), but can have non-equilibrium (i.e., kinetically controlled) distributions under other experimental conditions ('high' to 'over-mature' stages), particularly for pyrolysis of coal. Non-equilibrium compositions, when present, lead the measured proportions of clumped species to be lower than expected for equilibrium at the experimental temperature, and in some cases to be lower than a random distribution of isotopes (i.e., negative Δ18 values). We propose that the consistency with equilibrium for methane formed by relatively low temperature pyrolysis reflects local reversibility of isotope exchange reactions involving a reactant or transition state species during demethylation of one or more components of kerogen. Non-equilibrium clumped-isotope compositions occur under conditions where 'secondary' cracking of retained oil in shale or wet gas hydrocarbons (C2-5, especially ethane) in coal is prominent. We suggest these non-equilibrium isotopic compositions are the result of the expression of kinetic isotope effects during the irreversible generation of methane from an alkyl precursor. Other interpretations are also explored. These findings provide new insights into the chemistry of thermogenic methane generation, and may provide an explanation of the elevated apparent temperatures recorded by the methane clumped-isotope thermometer in some natural gases. However, it remains unknown if the laboratory experiments capture the processes that occur at the longer time and lower temperatures of natural gas formation.

Spatial distribution and seasonality of ichthyoplankton and anthropogenic debris in a river delta in the Caribbean Sea.

PubMed

Correa-Herrera, T; Barletta, M; Lima, A R A; Jiménez-Segura, L F; Arango-Sánchez, L B

2017-04-01

Temporal changes in larval fish species composition and abundance compared with other components of the seston are described in four estuarine habitats in the Atrato Delta, Colombia. In comparison with zooplankton, fish larvae and egg density and anthropogenic debris abundance were low in the South Atrato Delta. Transparency, water temperature and chlorophyll a were the major factors influencing the spatiotemporal distribution of ichthyoplankton in the delta. The most abundant fish larvae were Astyanax sp. 1, Anchovia clupeoides, Cetengraulis edentulus, Anchoa sp., Bathygbius curacao, Dormitator maculatus, Hyporhamphus sp., Atherinella blackburni, Gobiosoma sp. 1 and Menticirrhus americanus (92·8% of total abundance). Spatial temporal analysis shows that in this delta, shrub (arracachal) and grass (eneal) habitats are important for freshwater and estuarine species, whilst mudflat and mangrove are important for estuarine species and estuarine-marine species, since most flexion and post-flexion stages of these species were found there. Anthropogenic debris density never surpassed the total ichthyoplankton density, but was ubiquitous. Shrub and mangrove habitats had higher densities of anthropogenic debris, since these are flood-stem habitats that trap solids. © 2017 The Fisheries Society of the British Isles.

Long-term changes of tree species composition and distribution in Korean mountain forests

NASA Astrophysics Data System (ADS)

Lee, Boknam; Lee, Hoontaek; Cho, Sunhee; Yoon, Jongguk; Park, Jongyoung; Kim, Hyun Seok

2017-04-01

Long-term changes in the abundance and distribution of tree species in the temperate forests of South Korea remain poorly understood. We investigated how tree species composition and stand distribution change across temperate mountainous forests using the species composition and DBH size collected over the past 15 years (1998-2012) across 130 permanent forest plots of 0.1 ha in Jiri and Baegun mountains in South Korea. The overall net change of tree communities over the years showed positive in terms of stand density, richness, diversity, and evenness. At the species level, the change of relative species composition has been led by intermediate and shade-tolerant species, such as Quercus mongolica, Carpinus laxiflora, Quercus serrate, Quercus variabilis, Styrax japonicus, Lindera erythrocarpa, and Pinus densiflora and was categorized into five species communities, representing gradual increase or decrease, establishment, extinction, fluctuation of species population. At the community level, the change in species composition appeared to have consistent and directional patterns of increase in the annual rate of change in the mean species traits including species density, pole growth rate, adult growth rate, and adult stature. Based on the additive models, the distribution of species diversity was significantly related to topographical variables including elevation, latitude, longitude, slope, topographic wetness index, and curvature where elevation was the most significant driver, followed by latitude and longitude. However, the change in distribution of species diversity was only significantly influenced by latitude and longitude. This is the first study to reveal the long-term dynamics of change in tree species composition and distribution, which are important to broaden our understanding of temperate mountainous forest ecosystem in South Korea.

Effects of grain size, mineralogy, and acid-extractable grain coatings on the distribution of the fallout radionuclides 7Be, 10Be, 137Cs, and 210Pb in river sediment

NASA Astrophysics Data System (ADS)

Singleton, Adrian A.; Schmidt, Amanda H.; Bierman, Paul R.; Rood, Dylan H.; Neilson, Thomas B.; Greene, Emily Sophie; Bower, Jennifer A.; Perdrial, Nicolas

2017-01-01

Grain-size dependencies in fallout radionuclide activity have been attributed to either increase in specific surface area in finer grain sizes or differing mineralogical abundances in different grain sizes. Here, we consider a third possibility, that the concentration and composition of grain coatings, where fallout radionuclides reside, controls their activity in fluvial sediment. We evaluated these three possible explanations in two experiments: (1) we examined the effect of sediment grain size, mineralogy, and composition of the acid-extractable materials on the distribution of 7Be, 10Be, 137Cs, and unsupported 210Pb in detrital sediment samples collected from rivers in China and the United States, and (2) we periodically monitored 7Be, 137Cs, and 210Pb retention in samples of known composition exposed to natural fallout in Ohio, USA for 294 days. Acid-extractable materials (made up predominately of Fe, Mn, Al, and Ca from secondary minerals and grain coatings produced during pedogenesis) are positively related to the abundance of fallout radionuclides in our sediment samples. Grain-size dependency of fallout radionuclide concentrations was significant in detrital sediment samples, but not in samples exposed to fallout under controlled conditions. Mineralogy had a large effect on 7Be and 210Pb retention in samples exposed to fallout, suggesting that sieving sediments to a single grain size or using specific surface area-based correction terms may not completely control for preferential distribution of these nuclides. We conclude that time-dependent geochemical, pedogenic, and sedimentary processes together result in the observed differences in nuclide distribution between different grain sizes and substrate compositions. These findings likely explain variability of measured nuclide activities in river networks that exceeds the variability introduced by analytical techniques as well as spatial and temporal differences in erosion rates and processes. In short, we suggest that presence and amount of pedogenic grain coatings is more important than either specific surface area or surface charge in setting the distribution of fallout radionuclides.

Anthropogenic Litter in Urban Freshwater Ecosystems: Distribution and Microbial Interactions

PubMed Central

Hoellein, Timothy; Rojas, Miguel; Pink, Adam; Gasior, Joseph; Kelly, John

2014-01-01

Accumulation of anthropogenic litter (i.e. garbage; AL) and its ecosystem effects in marine environments are well documented. Rivers receive AL from terrestrial habitats and represent a major source of AL to marine environments, but AL is rarely studied within freshwater ecosystems. Our objectives were to 1) quantify AL density in urban freshwaters, 2) compare AL abundance among freshwater, terrestrial, and marine ecosystems, and 3) characterize the activity and composition of AL biofilms in freshwater habitats. We quantified AL from the Chicago River and Chicago's Lake Michigan shoreline, and found that AL abundance in Chicago freshwater ecosystems was comparable to previously reported data for marine and terrestrial ecosystems, although AL density and composition differed among habitats. To assess microbial interactions with AL, we incubated AL and natural substrates in 3 freshwater ecosystems, quantified biofilm metabolism as gross primary production (GPP) and community respiration (CR), and characterized biofilm bacterial community composition via high-throughput sequencing of 16S rRNA genes. The main driver of biofilm community composition was incubation location (e.g., river vs pond), but there were some significant differences in biofilm composition and metabolism among substrates. For example, biofilms on organic substrates (cardboard and leaves) had lower GPP than hard substrates (glass, plastic, aluminum and tiles). In addition, bacterial communities on organic substrates were distinct in composition from those on hard substrates, with higher relative abundances of bacteria associated with cellulose decomposition. Finally, we used our results to develop a conceptual diagram designed to unite the study of AL in terrestrial and freshwater environments with the well-established field of marine debris research. We suggest this broad perspective will be useful for future studies which synthesize AL sources, ecosystem effects, and fate across multiple ecosystem types, and will benefit management and reduction of global AL accumulations. PMID:24955768

Anthropogenic litter in urban freshwater ecosystems: distribution and microbial interactions.

PubMed

Hoellein, Timothy; Rojas, Miguel; Pink, Adam; Gasior, Joseph; Kelly, John

2014-01-01

Accumulation of anthropogenic litter (i.e. garbage; AL) and its ecosystem effects in marine environments are well documented. Rivers receive AL from terrestrial habitats and represent a major source of AL to marine environments, but AL is rarely studied within freshwater ecosystems. Our objectives were to 1) quantify AL density in urban freshwaters, 2) compare AL abundance among freshwater, terrestrial, and marine ecosystems, and 3) characterize the activity and composition of AL biofilms in freshwater habitats. We quantified AL from the Chicago River and Chicago's Lake Michigan shoreline, and found that AL abundance in Chicago freshwater ecosystems was comparable to previously reported data for marine and terrestrial ecosystems, although AL density and composition differed among habitats. To assess microbial interactions with AL, we incubated AL and natural substrates in 3 freshwater ecosystems, quantified biofilm metabolism as gross primary production (GPP) and community respiration (CR), and characterized biofilm bacterial community composition via high-throughput sequencing of 16S rRNA genes. The main driver of biofilm community composition was incubation location (e.g., river vs pond), but there were some significant differences in biofilm composition and metabolism among substrates. For example, biofilms on organic substrates (cardboard and leaves) had lower GPP than hard substrates (glass, plastic, aluminum and tiles). In addition, bacterial communities on organic substrates were distinct in composition from those on hard substrates, with higher relative abundances of bacteria associated with cellulose decomposition. Finally, we used our results to develop a conceptual diagram designed to unite the study of AL in terrestrial and freshwater environments with the well-established field of marine debris research. We suggest this broad perspective will be useful for future studies which synthesize AL sources, ecosystem effects, and fate across multiple ecosystem types, and will benefit management and reduction of global AL accumulations.

Apollo 15 green glass - Compositional distribution and petrogenesis

NASA Technical Reports Server (NTRS)

Steele, Alison M.; Colson, Russell O.; Korotev, Randy L.; Haskin, Larry A.

1992-01-01

We have characterized a comprehensive suite of individual green-glass beads from Apollo 15 soil to determine interelement behavior and to constrain petrogenetic relationships. We analyzed 365 particles for trace elements by instrumental neutron activation analysis and analyzed 52 of them, selected to cover the compositional ranges observed for trace elements, for major elements by electron microprobe analysis. We confirm the observation of Delano (1979) that the beads comprise discrete compositional groups, although two of the groups he defined are further split on the basis of trace-element compositions. Each of the resulting seven groups has distinct average rare-earth abundances. The coherence between major- and trace-element data was masked in previous studies by imprecision, correlated error, and nonrepresentative sampling of the different groups. Most of the compositional characteristics of the green glasses can be explained by a model for batch equilibrium melting of a nearly homogeneous, ultramafic source region, when the complicating effects of high pressure and low oxygen fugacity are taken into account. The previously puzzling behavior of Ni and Co as apparently incompatible elements may arise from partial reduction of those elements to the zero oxidation state, resulting in low mineral/melt partition coefficients. The model also offers explanations for why the green glasses form boomerang-shaped trends on many two-element variation diagrams and why certain compositions (Groups A and D) are more abundant than glasses with other compositions.

The role of landscape and habitat characteristics in limiting abundance of grassland nesting songbirds in an urban open space

USGS Publications Warehouse

Haire, S.; Bock, C.E.; Cade, B.S.; Bennett, B.C.

2000-01-01

We examine the relationships between abundance of grassland nesting songbirds observed in the Boulder Open Space, CO, USA and parameters that described landscape and habitat characteristics, in order to provide information for Boulder Open Space planners and managers. Data sets included bird abundance and plant species composition, collected during three breeding seasons (1994–1996), and landscape composition and configuration measures from a satellite image-derived land-cover map. We used regression quantiles to estimate the limitations imposed on bird abundance by urban encroachment and decreasing areas of grassland cover-types on the landscape, and habitat characteristics within 200 m diameter sample plots. After accounting for the effect of landscape grassland composition on four species (Western Meadowlark (Sturnella neglecta), Vesper Sparrow (Pooecetes gramineus), Horned Lark (Eremophila alpestris), and Grasshopper Sparrow (Ammodramus savannarum)), change in abundance with proportion of urban area in the landscape was consistent with the pattern expected for limiting factors that were the active constraint at some times and places. Area of preferred grassland cover-types on the landscape was important for all species, and this remained the case when habitat variables were included in combined landscape–habitat models, with one exception (Western Meadowlark). Analysis of habitat variables enabled identification of important features at the local scale (e.g. shale plant communities in Lark Sparrow (Chondestes grammacus) habitat) that were indistinguishable using landscape data alone. Consideration of changes in the landscape due to urbanization and loss of grassland habitat are crucial for open space planning, and habitat features associated with localized and clumped bird species distributions provide important additional information. Widening the management focus to include areas that are not part of the open space system will facilitate a more complete understanding of potential limiting factor processes.

Comparing seasonal dynamics of the Lake Huron zooplankton community between 1983-1984 and 2007 and revisiting the impact of Bythotrephes planktivory

USGS Publications Warehouse

Bunnell, David B.; Keeler, Kevin M.; Puchala, Elizabeth A.; Davis, Bruce M.; Pothoven, Steven A.

2012-01-01

Zooplankton community composition can be influenced by lake productivity as well as planktivory by fish or invertebrates. Previous analyses based on long-term Lake Huron zooplankton data from August reported a shift in community composition between the 1980s and 2000s: proportional biomass of calanoid copepods increased while that of cyclopoid copepods and herbivorous cladocerans decreased. Herein, we used seasonally collected data from Lake Huron in 1983–1984 and 2007 and reported similar shifts in proportional biomass. We also used a series of generalized additive models to explore differences in seasonal abundance by species and found that all three cyclopoid copepod species (Diacyclops thomasi, Mesocylops edax, Tropocyclops prasinus mexicanus) exhibited higher abundance in 1983–1984 than in 2007. Surprisingly, only one (Epischura lacustris) of seven calanoid species exhibited higher abundance in 2007. The results for cladocerans were also mixed with Bosmina spp. exhibiting higher abundance in 1983–1984, while Daphnia galeata mendotae reached a higher level of abundance in 2007. We used a subset of the 2007 data to estimate not only the vertical distribution of Bythotrephes longimanus and their prey, but also the consumption by Bythotrephes in the top 20 m of water. This epilimnetic layer was dominated by copepod copepodites and nauplii, and consumption either exceeded (Hammond Bay site) or equaled 65% (Detour site) of epilimnetic zooplankton production. The lack of spatial overlap between Bythotrephes and herbivorous cladocerans and cyclopoid copepod prey casts doubt on the hypothesis that Bythotrephes planktivory was the primary driver underlying the community composition changes in the 2000s.

[Distribution and Diversity of Ammonium-oxidizing Archaea and Ammonium-oxidizing Bacteria in Surface Sediments of Oujiang River].

PubMed

Li, Hu; Huang, Fu-yi; Su, Jian-qiang; Hong, You-wei; Yu, Shen

2015-12-01

Ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) play important roles in the biogeochemical nitrogen cycle. Rivers are important ecosystems containing a large number of functional microbes in nitrogen cycle. In this study, denaturing gradient gel electrophoresis (DGGE ) and real-time quantitative PCR (qPCR) technology were used to analyze the distribution and diversity of AOA and AOB in sediments from Oujiang. The results showed that the AOA community structure was similar among various sites, while the AOB community structure was significantly different, in which all detected AOB sequences were classified into Nitrosospira and Nitrosomonas, and 90% affiliated to Nitrosospira. The community composition of AOA was influenced by NH₄⁺ and TS, in addition, the AOB composition was affected by NH₄⁺, EC, pH, NO₃⁻, TC and TN. Total sulfur (TS) and electrical conductivity (EC) were the major factors influencing the diversity of AOA and AOB, respectively. AOA abundance was significantly higher than that of AOB. EC, NH₄⁺-N and NO₃⁻-N were the main environmental factors affecting the abundance of AOA and AOB. This study indicated that the community composition and diversity of AOA and AOB were significantly influenced by environmental factors, and AOA might be dominant drivers in the ammonia oxidation process in Oujiang surface sediment.

Meiofauna assemblages of the Condor Seamount (North-East Atlantic Ocean) and adjacent deep-sea sediments

NASA Astrophysics Data System (ADS)

Zeppilli, Daniela; Bongiorni, Lucia; Cattaneo, Antonio; Danovaro, Roberto; Santos, Ricardo Serrão

2013-12-01

Seamounts are currently considered hotspots of biodiversity and biomass for macro- and megabenthic taxa, but knowledge of meiofauna is still limited. Studies have revealed the existence of highly diverse meiofauna assemblages; however most data are mainly qualitative or focused only on specific groups, thus preventing comparisons among seamounts and with other deep-sea areas. This study, conducted on Condor Seamount (Azores, North-East Atlantic Ocean), describes variation in abundance, biomass, community structure and biodiversity of benthic meiofauna from five sites located on the Condor Seamount: and one site away from the seamount. While the summit of the seamount hosted the highest alpha biodiversity, the flanks and the bases showed a rich meiofauna assemblage in terms of abundance and biomass. The observed marked differences in grain size composition of sediments reflected the oceanographic conditions impacting different sectors of the Condor seamount, and could play an important role in the spatial distribution of different meiofaunal taxa. Trophic conditions (biochemical composition of organic matter) explained 78% of the variability in the meiofauna biomass pattern while sediment grain influenced the vertical distribution of meiofauna and only partially explained meiofaunal taxa composition. This study provides a further advancement in the knowledge of meiofaunal communities of seamounts. Only a deeper understanding of the whole benthic communities (including meiofauna) will allow to elaborate effective management and conservation tools for seamount ecosystems.

Spatial ecological processes and local factors predict the distribution and abundance of spawning by steelhead (Oncorhynchus mykiss) across a complex riverscape

USGS Publications Warehouse

Falke, Jeffrey A.; Dunham, Jason B.; Jordan, Christopher E.; McNyset, Kris M.; Reeves, Gordon H.

2013-01-01

Processes that influence habitat selection in landscapes involve the interaction of habitat composition and configuration and are particularly important for species with complex life cycles. We assessed the relative influence of landscape spatial processes and local habitat characteristics on patterns in the distribution and abundance of spawning steelhead (Oncorhynchus mykiss), a threatened salmonid fish, across ~15,000 stream km in the John Day River basin, Oregon, USA. We used hurdle regression and a multi-model information theoretic approach to identify the relative importance of covariates representing key aspects of the steelhead life cycle (e.g., site access, spawning habitat quality, juvenile survival) at two spatial scales: within 2-km long survey reaches (local sites) and ecological neighborhoods (5 km) surrounding the local sites. Based on Akaike’s Information Criterion, models that included covariates describing ecological neighborhoods provided the best description of the distribution and abundance of steelhead spawning given the data. Among these covariates, our representation of offspring survival (growing-season-degree-days, °C) had the strongest effect size (7x) relative to other predictors. Predictive performances of model-averaged composite and neighborhood-only models were better than a site-only model based on both occurrence (percentage of sites correctly classified = 0.80±0.03 SD, 0.78±0.02 vs. 0.62±0.05, respectively) and counts (root mean square error = 3.37, 3.93 vs. 5.57, respectively). The importance of both temperature and stream flow for steelhead spawning suggest this species may be highly sensitive to impacts of land and water uses, and to projected climate impacts in the region and that landscape context, complementation, and connectivity will drive how this species responds to future environments.

Organic matter composition and macrofaunal diversity in sediments of the Condor Seamount (Azores, NE Atlantic)

NASA Astrophysics Data System (ADS)

Bongiorni, Lucia; Ravara, Ascensão; Parretti, Paola; Santos, Ricardo S.; Rodrigues, Clara F.; Amaro, Teresa; Cunha, Marina R.

2013-12-01

In recent years increasing knowledge has been accumulated on seamounts ecology; however their sedimentary environments and associated biological communities remain largely understudied. In this study we investigated quantity and biochemical composition of organic matter and macrofaunal diversity in sediments of the Condor Seamount (NE Atlantic, Azores). In order to test the effect of the seamount on organic matter distribution, sediment samples were collected in 6 areas: the summit, the northern and southern flanks and bases, and in an external far field site. Macrofauna abundance and diversity were investigated on the summit, the southern flank and in the far field site. The organic matter distribution reflected the complex hydrodynamic conditions occurring on the Condor. Concentrations of organic matter compounds were generally lower on the whole seamount than in the far field site and on the seamount summit compared to flanks and bases. A clear difference was also evident between the northern and southern slopes of the Condor, suggesting a role of the seamount in conditioning sedimentation processes and distribution of food resources for benthic consumers. Macrofauna assemblages changed significantly among the three sampling sites. High abundance and dominance, accompanied by low biodiversity, characterized the macrofauna community on the Condor summit, while low dominance and high biodiversity were observed at the flank. Our results, although limited to five samples on the seamount and two off the seamount, do not necessarily support the paradigm that seamounts are more biodiverse than the surrounding seafloor. However, the abundance (and biomass), functional diversity and taxonomical distinctiveness of the macrofaunal assemblages from the Condor Seamount suggest that seamounts habitats may play a relevant role in adding to the regional biodiversity.

Changing Arctic ecosystems--the role of ecosystem changes across the Boreal-Arctic transition zone on the distribution and abundance of wildlife populations

USGS Publications Warehouse

McNew, Lance; Handel, Colleen M.; Pearce, John; DeGange, Anthony R.; Holland-Bartels, Leslie; Whalen, Mary

2013-01-01

Arctic and boreal ecosystems provide important breeding habitat for more than half of North America’s migratory birds as well as many resident species. Northern landscapes are projected to experience more pronounced climate-related changes in habitat than most other regions. These changes include increases in shrub growth, conversion of tundra to forest, alteration of wetlands, shifts in species’ composition, and changes in the frequency and scale of fires and insect outbreaks. Changing habitat conditions, in turn, may have significant effects on the distribution and abundance of wildlife in these critical northern ecosystems. The U.S. Geological Survey (USGS) is conducting studies in the Boreal–Arctic transition zone of Alaska, an environment of accelerated change in this sensitive margin between Arctic tundra and boreal forest.

Distribution patterns of the mesozooplankton, principally siphonophores and medusae, in the vicinity of the Antarctic Slope Front (eastern Weddell Sea)

NASA Astrophysics Data System (ADS)

Pagès, Francesc; Schnack-Schiel, Sigrid B.

1996-12-01

The composition, abundance and vertical distribution of mesozooplankton, particularly siphonophores and medusae (27 species), collected along two transects in the eastern Weddell Sea have been analysed. Both transects were characterized by a steep thermocline that on approaching the coastline defined the Antarctic Slope Front. The front acted as a strong boundary in the shelf-slope and caused a pronounced cross frontal gradient in the populations of cnidarians. Few species and low abundances were found in the upper cold waters and most of the populations concentrated in and below the thermocline. The analysis of the gastrozooids of the physonect siphonophore Pyrostephos vanhoeffeni showed a wide variety of prey but the relatively high contribution of krill larvae reveals a substantial trophic impact when both organisms co-occur.

Distribution of invasive and native riparian woody plants across the western USA in relation to climate, river flow, floodplain geometry and patterns of introduction

USGS Publications Warehouse

Ryan McShane,; Daniel Auerbach,; Friedman, Jonathan M.; Auble, Gregor T.; Shafroth, Patrick B.; Michael Merigliano,; Scott, Michael L.; N. Leroy Poff,

2015-01-01

Management of riparian plant invasions across the landscape requires understanding the combined influence of climate, hydrology, geologic constraints and patterns of introduction. We measured abundance of nine riparian woody taxa at 456 stream gages across the western USA. We constructed conditional inference recursive binary partitioning models to discriminate the influence of eleven environmental variables on plant occurrence and abundance, focusing on the two most abundant non-native taxa, Tamarix spp. and Elaeagnus angustifolia, and their native competitor Populus deltoides. River reaches in this study were distributed along a composite gradient from cooler, wetter higher-elevation reaches with higher stream power and earlier snowmelt flood peaks to warmer, drier lower-elevation reaches with lower power and later peaks. Plant distributions were strongly related to climate, hydrologic and geomorphic factors, and introduction history. The strongest associations were with temperature and then precipitation. Among hydrologic and geomorphic variables, stream power, peak flow timing and 10-yr flood magnitude had stronger associations than did peak flow predictability, low-flow magnitude, mean annual flow and channel confinement. Nearby intentional planting of Elaeagnus was the best predictor of its occurrence, but planting of Tamarix was rare. Higher temperatures were associated with greater abundance of Tamarix relative to P. deltoides, and greater abundance of P. deltoides relative toElaeagnus. Populus deltoides abundance was more strongly related to peak flow timing than was that of Elaeagnus or Tamarix. Higher stream power and larger 10-yr floods were associated with greater abundance of P. deltoides and Tamarix relative to Elaeagnus. Therefore, increases in temperature could increase abundance of Tamarix and decrease that of Elaeagnus relative to P. deltoides, changes in peak flow timing caused by climate change or dam operations could increase abundance of both invasive taxa, and dam-induced reductions in flood peaks could increase abundance of Elaeagnus relative to Tamarix and P. deltoides.

Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance.

PubMed

Staton, S Evan; Burke, John M

2015-08-20

The transposable element (TE) content of the genomes of plant species varies from near zero in the genome of Utricularia gibba to more than 80% in many species. It is not well understood whether this variation in genome composition results from common mechanisms or stochastic variation. The major obstacles to investigating mechanisms of TE evolution have been a lack of comparative genomic data sets and efficient computational methods for measuring differences in TE composition between species. In this study, we describe patterns of TE evolution in 14 species in the flowering plant family Asteraceae and 1 outgroup species in the Calyceraceae to investigate phylogenetic patterns of TE dynamics in this important group of plants. Our findings indicate that TE families in the Asteraceae exhibit distinct patterns of non-neutral evolution, and that there has been a directional increase in copy number of Gypsy retrotransposons since the origin of the Asteraceae. Specifically, there is marked increase in Gypsy abundance at the origin of the Asteraceae and at the base of the tribe Heliantheae. This latter shift in genome composition has had a significant impact on the diversity and abundance distribution of TEs in a lineage-specific manner. We show that the TE-driven expansion of plant genomes can be facilitated by just a few TE families, and is likely accompanied by the modification and/or replacement of the TE community. Importantly, large shifts in TE composition may be correlated with major of phylogenetic transitions.

FIP effect for minor heavy solar wind ions as seen with SOHO/CELIAS/MTOF

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heidrich-Meisner, Verena, E-mail: heidrich@physik.uni-kiel.de; Berger, Lars; Wimmer-Schweingruber, Robert F.

A recent paper [Shearer et al., 2014] reported that during solar maximum Ne showed a surprisingly low abundance. This leads to the question whether other elements show the same behavior. The good mass resolution of Mass-Time-Of-Flight (MTOF) as part of the Charge ELement and Isotope Analysis System (CELIAS) on the Solar Helioshperic Observatory (SOHO) allows to investigate the composition of heavy minor elements in different types of solar wind. We restrict this study to slow solar wind, where the characterisation of slow solar wind is taken from Xu and Borovsky, 2014. This classification scheme requires magnet field information. Since SOHOmore » does not carry a magnetometer, we use the Magnetometer (MAG) of the Advanced Composition Explorer (ACE) instead. The Solar Wind Ion Composition Spectrometer (ACE/SWICS) also provides composition data for cross-calibration and charge-state distributions as input for the transmission function of MTOF whenever the two spacecraft can be expected to observe the same type of wind. We illustrate the MTOF’s capability to determine the solar wind abundance compared to the photospheric abundance (called the FIP ratio in the following) for rare elements like Ti or Cr on long-time scales as a proof of concept for our analysis. And in this brief study, measurements with both ACE/SWICS indicate that the observed elements exhibit a (weak) dependence on the solar cycle, whereas the MTOF measurements are inconclusive.« less

Distinct distribution patterns of prokaryotes between sediment and water in the Yellow River estuary.

PubMed

Wei, Guangshan; Li, Mingcong; Li, Fenge; Li, Han; Gao, Zheng

2016-11-01

There are close exchanges between sediment and water in estuaries; however, the patterns of prokaryotic community assembly in these two habitat types are still unclear. This study investigated the bacterial and archaeal abundance, diversity, and community composition in the sediment and the overlying water of the Yellow River estuary. Notably higher prokaryotic abundance and diversity were detected in the sediment than in the water, and bacterial abundance and diversity were remarkably higher than those of archaea. Furthermore, the ratio of bacterial to archaeal 16S rRNA gene abundance was significantly lower in the sediment than in the water. Bacterial communities at different taxonomic levels were apparently distinct between the sediment and water, but archaeal communities were not. The most dominant bacteria were affiliated with Deltaproteobacteria and Gammaproteobacteria in sediment and with Alphaproteobacteria and Betaproteobacteria in water. Euryarchaeota and Thaumarchaeota were the most abundant archaea in both habitats. Although distinct prokaryotic distribution patterns were observed, most of the dominant bacteria and archaea present were related to carbon, nitrogen, and sulfur cycling processes, such as methanogenesis, ammonia oxidation, and sulfate reduction. Unexpectedly, prokaryotes from the water showed a higher sensitivity to environmental factors, while only a few factors affected sediment communities. Additionally, some potential co-occurrence relationships between prokaryotes were also found in this study. These results suggested distinct distribution patterns of bacterial and archaeal communities between sediment and overlying water in this important temperate estuary, which may serve as a useful community model for the further ecological and evolutionary study of prokaryotes in estuarine ecosystems.

Assessing the suitability of benthic foraminiferal morpho-groups to reconstruct paleomonsoon from Bay of Bengal

NASA Astrophysics Data System (ADS)

Manasa, M.; Saraswat, Rajeev; Nigam, Rajiv

2016-04-01

Temporal changes in benthic foraminiferal morpho-groups were suggested as an effective proxy to reconstruct past monsoon intensity from the Arabian Sea. Here, in order to test the applicability of temporal variation in morpho-groups to reconstruct past monsoon intensity from the Bay of Bengal, we have documented recent benthic foraminiferal distribution from the continental shelf region of the northwestern Bay of Bengal. Based on the external morphology, benthic foraminifera were categorized into rounded symmetrical (RSBF) and angular asymmetrical benthic foraminifera (AABF). Additionally, a few other dominant groups were also identified based on test composition (agglutinated, calcareous) and abundance (Asterorotalids and Nonions). The relative abundance of each group was compared with the ambient physico-chemical conditions, including dissolved oxygen, organic matter, salinity and temperature. We report that the RSBF are abundant in comparatively warm and well oxygenated waters of low salinity, suggesting a preference for high energy environment, whereas AABF dominate relatively cold, hypersaline deeper waters with low dissolved oxygen, indicating a low energy environment. The agglutinated foraminifera, Asterorotalids and Nonions dominate shallow water, low salinity regions, whereas the calcareous benthic foraminiferal abundance increases away from the riverine influx regions. Food availability, as estimated from organic carbon abundance in sediments, has comparatively less influence on faunal distribution in the northwestern Bay of Bengal, as compared to dissolved oxygen, temperature and salinity. We conclude that the factors associated with freshwater influx affect the distribution of benthic foraminiferal morpho-groups in the northwestern Bay of Bengal and thus it can be used to reconstruct past monsoon intensity from the Bay of Bengal.

Remote sensing of potential lunar resources. I - Near-side compositional properties

NASA Technical Reports Server (NTRS)

Johnson, Jeffrey R.; Larson, Stephen M.; Singer, Robert B.

1991-01-01

Using telescopic CCD multispectral images of the lunar near side and the results of 330-870 nm spectroscopy of selected regions, the compositional differences relevant to the locations of potential lunar resources (such as ilmenite, FeTiO3, and solar-wind-implanted He-3 and H) are estimated. The 400/560 nm CCD ratio images were converted to weight percent TiO2, and the values were used to construct a new TiO2 abundance map which can be used to estimate the areas potentially rich in ilmenite. A 950/560 nm CCD ratio mosaic of the full moon provides estimates of relative surface maturity. Since high He-3 concentrations correlate with mature ilmenite-rich soils, a combination of relative surface maturity maps and the TiO2 abundance maps can be used to estimate distributions of He-3 (and possibly H) on local scales.

Hard-Soft Composite Carbon as a Long-Cycling and High-Rate Anode for Potassium-Ion Batteries

DOE PAGES

Jian, Zelang; Hwang, Sooyeon; Li, Zhifei; ...

2017-05-05

There exist tremendous needs for sustainable storage solutions for intermittent renewable energy sources, such as solar and wind energy. Thus, systems based on Earth-abundant elements deserve much attention. Potassium-ion batteries represent a promising candidate because of the abundance of potassium resources. As for the choices of anodes, graphite exhibits encouraging potassium-ion storage properties; however, it suffers limited rate capability and poor cycling stability. Here in this paper, nongraphitic carbons as K-ion anodes with sodium carboxymethyl cellulose as the binder are systematically investigated. Compared to hard carbon and soft carbon, a hard–soft composite carbon with 20 wt% soft carbon distributed inmore » the matrix phase of hard carbon microspheres exhibits highly amenable performance: high capacity, high rate capability, and very stable long-term cycling. In contrast, pure hard carbon suffers limited rate capability, while the capacity of pure soft carbon fades more rapidly.« less

Hard-Soft Composite Carbon as a Long-Cycling and High-Rate Anode for Potassium-Ion Batteries

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jian, Zelang; Hwang, Sooyeon; Li, Zhifei

There exist tremendous needs for sustainable storage solutions for intermittent renewable energy sources, such as solar and wind energy. Thus, systems based on Earth-abundant elements deserve much attention. Potassium-ion batteries represent a promising candidate because of the abundance of potassium resources. As for the choices of anodes, graphite exhibits encouraging potassium-ion storage properties; however, it suffers limited rate capability and poor cycling stability. Here in this paper, nongraphitic carbons as K-ion anodes with sodium carboxymethyl cellulose as the binder are systematically investigated. Compared to hard carbon and soft carbon, a hard–soft composite carbon with 20 wt% soft carbon distributed inmore » the matrix phase of hard carbon microspheres exhibits highly amenable performance: high capacity, high rate capability, and very stable long-term cycling. In contrast, pure hard carbon suffers limited rate capability, while the capacity of pure soft carbon fades more rapidly.« less

Isotopic abundances of Hg in mercury stars inferred from the Hg II line at 3984 A

NASA Technical Reports Server (NTRS)

White, R. E.; Vaughan, A. H., Jr.; Preston, G. W.; Swings, J. P.

1976-01-01

Wavelengths of the Hg II absorption feature at 3984 A in 30 Hg stars are distributed uniformly from the value for the terrestrial mix to a value that corresponds to nearly pure Hg-204. The wavelengths are correlated loosely with effective temperatures inferred from Q(UBV). Relative isotopic abundances derived from partially resolved profiles of the 3984-A line in iota CrB, chi Lup, and HR 4072 suggest that mass-dependent fractionation has occurred in all three stars. It is supposed that such fractionation occurs in all Hg stars, and a scheme whereby isotopic compositions can be inferred from a comparison of stellar wavelengths and equivalent widths with those calculated for a family of fractionated isotopic mixes. Theoretical profiles calculated for the derived isotopic composition agree well with high-resolution interferometric profiles obtained for three of the stars.

Seasonal composition, abundance and biomass of the subestuarine fish assemblage in Solís Chico (Río de la Plata estuary, Uruguay).

PubMed

Plavan, A Acuña; Gurdek, R; Muñoz, N; Gutierrez, J M; Spósito, M; Correa, P; Caride, A

2017-01-01

The large estuaries can present long narrow branches called subestuaries or tidal creeks. These types of subsystems are distributed along the Uruguayan coast of the Río de la Plata estuary and are very important as nursery and refuge areas for fish. For the first time, the seasonal composition and abundance of the fish community of the Solís Chico subestuary was studied by using beach and gill nets. Fourteen species, mainly euryhaline (86%) presented a significant representation of juvenile stages. The fish community was dominated by Odontesthes argentinensis, Platanichthys platana, Mugil liza, Brevoortia aurea, Micropogonias furnieri and Paralichthys orbignyanus, similar to adjacent subestuaries. While Micropogonias furnieri and B. aurea were the most abundant species, some other species were rarely caught. A seasonal variation of the fish assemblage abundance was detected, with higher values in autumn showing a positive correlation with temperature. Species that complete their life cycle in the Río de la Plata estuary, some of which are relevant to fisheries (64% of the analyzed species) were captured in the Solís Chico subestuary. The importance of this environment as a transitional system for some estuarine fish species is advised.

EFFECTS OF DYNAMICAL EVOLUTION OF GIANT PLANETS ON THE DELIVERY OF ATMOPHILE ELEMENTS DURING TERRESTRIAL PLANET FORMATION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsumura, Soko; Brasser, Ramon; Ida, Shigeru, E-mail: s.matsumura@dundee.ac.uk

2016-02-10

Recent observations started revealing the compositions of protostellar disks and planets beyond the solar system. In this paper, we explore how the compositions of terrestrial planets are affected by the dynamical evolution of giant planets. We estimate the initial compositions of the building blocks of these rocky planets by using a simple condensation model, and numerically study the compositions of planets formed in a few different formation models of the solar system. We find that the abundances of refractory and moderately volatile elements are nearly independent of formation models, and that all the models could reproduce the abundances of thesemore » elements of the Earth. The abundances of atmophile elements, on the other hand, depend on the scattering rate of icy planetesimals into the inner disk, as well as the mixing rate of the inner planetesimal disk. For the classical formation model, neither of these mechanisms are efficient and the accretion of atmophile elements during the final assembly of terrestrial planets appears to be difficult. For the Grand Tack model, both of these mechanisms are efficient, which leads to a relatively uniform accretion of atmophile elements in the inner disk. It is also possible to have a “hybrid” scenario where the mixing is not very efficient but the scattering is efficient. The abundances of atmophile elements in this case increase with orbital radii. Such a scenario may occur in some of the extrasolar planetary systems, which are not accompanied by giant planets or those without strong perturbations from giants. We also confirm that the Grand Tack scenario leads to the distribution of asteroid analogues where rocky planetesimals tend to exist interior to icy ones, and show that their overall compositions are consistent with S-type and C-type chondrites, respectively.« less

Abstracts for the International Conference on Asteroids, Comets, Meteors 1991

NASA Technical Reports Server (NTRS)

1991-01-01

Topics addressed include: chemical abundances; asteroidal belt evolution; sources of meteors and meteorites; cometary spectroscopy; gas diffusion; mathematical models; cometary nuclei; cratering records; imaging techniques; cometary composition; asteroid classification; radio telescopes and spectroscopy; magnetic fields; cosmogony; IUE observations; orbital distribution of asteroids, comets, and meteors; solar wind effects; computerized simulation; infrared remote sensing; optical properties; and orbital evolution.

Abundance, distribution, trends, and ownership patterns of early successional forests in the northeastern United States

Treesearch

Robert T. Brooks

2003-01-01

Early-successional forests are ephemeral and distinct forest communities, maintained by disturbance and dominated by small-sized trees and shrubs. These structural and compositional conditions form a unique habitat that is preferred by many wildlife species. Various sources have indicated that there have been declines in early-successional forest area and in the...

Preliminary list of flying mammals in the Ajos-Bavispe National Forest Reserve and Wildlife Refuge, Sonora

Treesearch

Rosa Elena Jimenez; Christ D. Weise; Mario Cirett-Galan; Guadalupe Flores; Manuel Munguia; E. Isaias Ochoa

2013-01-01

Information on bat communities, including their composition, abundance, distribution and ecology, can support management programs in protected areas, and also provide information and initiatives for the designation of new protected areas. In 2010 and 2011, monitoring was conducted in the Ajos Mountains, a sky island, that is part of the Ajos Bavispe Reserve. During...

The Mediterranean Plastic Soup: synthetic polymers in Mediterranean surface waters.

PubMed

Suaria, Giuseppe; Avio, Carlo G; Mineo, Annabella; Lattin, Gwendolyn L; Magaldi, Marcello G; Belmonte, Genuario; Moore, Charles J; Regoli, Francesco; Aliani, Stefano

2016-11-23

The Mediterranean Sea has been recently proposed as one of the most impacted regions of the world with regards to microplastics, however the polymeric composition of these floating particles is still largely unknown. Here we present the results of a large-scale survey of neustonic micro- and meso-plastics floating in Mediterranean waters, providing the first extensive characterization of their chemical identity as well as detailed information on their abundance and geographical distribution. All particles >700 μm collected in our samples were identified through FT-IR analysis (n = 4050 particles), shedding for the first time light on the polymeric diversity of this emerging pollutant. Sixteen different classes of synthetic materials were identified. Low-density polymers such as polyethylene and polypropylene were the most abundant compounds, followed by polyamides, plastic-based paints, polyvinyl chloride, polystyrene and polyvinyl alcohol. Less frequent polymers included polyethylene terephthalate, polyisoprene, poly(vinyl stearate), ethylene-vinyl acetate, polyepoxide, paraffin wax and polycaprolactone, a biodegradable polyester reported for the first time floating in off-shore waters. Geographical differences in sample composition were also observed, demonstrating sub-basin scale heterogeneity in plastics distribution and likely reflecting a complex interplay between pollution sources, sinks and residence times of different polymers at sea.

Species Composition and Distribution of Zooplankton from Northeastern Sakhalin Shelf (Sea of Okhotsk)

NASA Astrophysics Data System (ADS)

Kasyan, V. V.

2018-03-01

The species composition, density, biomass, and distribution of zooplankton of the northeastern Sakhalin shelf, Sea of Okhotsk (Chaivo, Pil'tunskii, and Morskoi regions) were studied in October 2014. Zooplankton was represented by 15 taxonomic groups, which were dominated by Copepoda (13 species). The average density and biomass was highest in the Chaivo region (14112 ± 4322 ind./m3, 395 ± 107 mg/m3) and in the Pil'tunskii region (16692 ± 10707 ind./m3, 346 ± 233 mg/m3); the abundance of detected taxonomic groups was minimal (8-12). The average density and biomass of zooplankton was up to 4304 ± 2441 ind./m3, 133 ± 77 mg/m3 in the Morskoi region and increased with depth; the abundance of taxa was maximum (15). Four species of copepods made up the majority of the density and biomass of zooplankton: Acartia hudsonica, Eurytemora herdmani, Pseudocalanus newmani, and Oithona similis. In the Chaivo region, species of the genera Acartia, Eurytemora, and Oithona dominated and subdominated; in Pil'tunskii region, species of the genera Acartia and Oithona dominated and subdominated; and in the Morskoi region, species of the genera Oithona, Pseudocalanus, and Acartia dominated and subdominated.

The Mediterranean Plastic Soup: synthetic polymers in Mediterranean surface waters

NASA Astrophysics Data System (ADS)

Suaria, Giuseppe; Avio, Carlo G.; Mineo, Annabella; Lattin, Gwendolyn L.; Magaldi, Marcello G.; Belmonte, Genuario; Moore, Charles J.; Regoli, Francesco; Aliani, Stefano

2016-11-01

The Mediterranean Sea has been recently proposed as one of the most impacted regions of the world with regards to microplastics, however the polymeric composition of these floating particles is still largely unknown. Here we present the results of a large-scale survey of neustonic micro- and meso-plastics floating in Mediterranean waters, providing the first extensive characterization of their chemical identity as well as detailed information on their abundance and geographical distribution. All particles >700 μm collected in our samples were identified through FT-IR analysis (n = 4050 particles), shedding for the first time light on the polymeric diversity of this emerging pollutant. Sixteen different classes of synthetic materials were identified. Low-density polymers such as polyethylene and polypropylene were the most abundant compounds, followed by polyamides, plastic-based paints, polyvinyl chloride, polystyrene and polyvinyl alcohol. Less frequent polymers included polyethylene terephthalate, polyisoprene, poly(vinyl stearate), ethylene-vinyl acetate, polyepoxide, paraffin wax and polycaprolactone, a biodegradable polyester reported for the first time floating in off-shore waters. Geographical differences in sample composition were also observed, demonstrating sub-basin scale heterogeneity in plastics distribution and likely reflecting a complex interplay between pollution sources, sinks and residence times of different polymers at sea.

Abundance and distribution of fatty acids within the walls of an active deep-sea sulfide chimney

NASA Astrophysics Data System (ADS)

Li, Jiwei; Zhou, Huaiyang; Peng, Xiaotong; Fu, Meiyan; Chen, Zhiqiang; Yao, Huiqiang

2011-04-01

Abundance and distribution of total fatty acids (TFAs) were examined along the physicochemical gradient within an active hydrothermal chimney collected from the Main Endeavour segment of Juan de Fuca Ridge. Approximately 27 fatty acids are identified with a chain-length ranging from C12 to C22. From the exterior to the interior of the chimney walls, the total concentrations of TFAs (∑ TFAs) show a trend of evident decrease. The observed compositions of TFAs are rich in bacterial biomarkers especially monounsaturated fatty acids (MUFAs) and minor branched and cyclopropyl FAs. On the basis of the species-specific FAs and bacterial 16SrRNA gene analysis (Li et al., unpublished data), sulfur-based metabolism appears to be the essential metabolic process in the chimney. Furthermore, the sulfur oxidizing bacteria (SOB) are identified as a basic component of microbial communities at the exterior of the hydrothermal chimney, and its proportion shows an inward decrease while the sulfate reducing bacteria (SRB) have an inverse distribution.

Genetic analysis reveals the diversity of larval Gobiidae in a temperate estuary.

PubMed

Ojaveer, H; Gross, R; Laur, K; Arula, T; Klais, R

2017-10-01

Using molecular tools to examine Gobiidae, the second most abundant taxon in ichthyoplankton samples in the Gulf of Riga (Baltic Sea), the sand goby Pomatoschistus minutus was the most abundant taxon (82% of all individuals analysed), the common goby Pomatoschistus microps constituted 12% and the black goby Gobius niger 6%. The spatiotemporal distribution of P. microps and G. niger indicated a preference for habitats closer to the river inlet and their abundances increased slightly towards the end of the sampling period in summer. The species composition was interpreted in the context of the prevailing habitat conditions, characterized by extremely low water transparency, low salinity, limited spread of vegetated area and dominance of sandy-muddy substrata. © 2017 The Fisheries Society of the British Isles.

Is substrate composition a suitable predictor for deep-water coral occurrence on fine scales?

NASA Astrophysics Data System (ADS)

Bennecke, Swaantje; Metaxas, Anna

2017-06-01

Species distribution modelling can be applied to identify potentially suitable habitat for species with largely unknown distributions, such as many deep-water corals. Important variables influencing species occurrence in the deep sea, e.g. substrate composition, are often not included in these modelling approaches because high-resolution data are unavailable. We investigated the relationship between substrate composition and the occurrence of the two deep-water octocoral species Primnoa resedaeformis and Paragorgia arborea, which require hard substrate for attachment. On a scale of 10s of metres, we analysed images of the seafloor taken at two locations inside the Northeast Channel Coral Conservation Area in the Northwest Atlantic. We interpolated substrate composition over the sampling areas and determined the contribution of substrate classes, depth and slope to describe habitat suitability using maximum entropy modelling (Maxent). Substrate composition was similar at both sites - dominated by pebbles in a matrix of sand (>80%) with low percentages of suitable substrate for coral occurrence. Coral abundance was low at site 1 (0.9 colonies of P. resedaeformis per 100 m2) and high at site 2 (63 colonies of P. resedaeformis per 100 m2) indicating that substrate alone is not sufficient to explain varying patterns in coral occurrence. Spatial interpolations of substrate classes revealed the difficulty to accurately resolve sparsely distributed boulders (3-5% of substrate). Boulders were by far the most important variable in the habitat suitability model (HSM) for P. resedaeformis at site 1, indicating the fundamental influence of a substrate class that is the least abundant. At site 2, HSMs identified cobbles and sand/pebble as the most important variables for habitat suitability. However, substrate classes were correlated making it difficult to determine the influence of individual variables. To provide accurate information on habitat suitability for the two coral species, substrate composition needs to be quantified so that small fractions (<20% contribution of certain substrate class) of suitable substrate are resolved. While the collection and analysis of high-resolution data is costly and spatially limited, the required resolution is unlikely to be achieved in coarse-scale interpolations of substrate data.

Early-phase dynamics in coral recovery following cyclone disturbance on the inshore Great Barrier Reef, Australia

NASA Astrophysics Data System (ADS)

Sato, Yui; Bell, Sara C.; Nichols, Cassandra; Fry, Kent; Menéndez, Patricia; Bourne, David G.

2018-06-01

Coral recovery (the restoration of abundance and composition of coral communities) after disturbance is a key process that determines the resilience of reef ecosystems. To understand the mechanisms underlying the recovery process of coral communities, colony abundance and size distribution were followed on reefs around Pelorus Island, located in the inshore central region of the Great Barrier Reef, following a severe tropical cyclone in 2011 that caused dramatic loss of coral communities. Permanent quadrats (600 m2) were monitored biannually between 2012 and 2016, and individual coral colonies were counted, sized and categorized into morphological types. The abundance of coral recruits and coral cover were also examined using permanent quadrats and random line intercept transects, respectively. The number of colonies in the smallest size class (4-10 cm) increased substantially during the study period, driving the recovery of coral populations. The total number of coral colonies 5 yr post-cyclone reached between 73 and 122% of pre-cyclone levels though coral cover remained between 16 and 31% of pre-cyclone levels, due to the dominance of small coral colonies in the recovering communities. Temporal transitions of coral demography (i.e., colony-size distributions) illustrated that the number of recently established coral populations overtook communities of surviving colonies. Coral recruits (< 4 cm in size) also showed increasing patterns in abundance over the study period, underscoring the importance of larval supply in coral recovery. A shift in morphological composition of coral communities was also observed, with the relative abundance of encrusting corals reduced post-cyclone in contrast to their dominance prior to the disturbance. This study identifies the fine-scale processes involved in the initial recovery of coral reefs, providing insights into the dynamics of coral demography that are essential for determining coral reef resilience following major disturbance.

Larvae of uncommon caridean decapods in the German Bight: Species composition, distribution and abundance

NASA Astrophysics Data System (ADS)

Wehrtmann, I. S.; Greve, W.

1995-03-01

Typically, the most abundant group of shrimp larvae in the German Bight is formed by representatives of the family Crangonidae. Larvae of the remaining species have been largely ignored, and only scarce information concerning their ecology is available. Thus, the purpose of the present study was to determine the species composition, distribution and abundance of noncrangonid shrimp larvae in the German Bight in July 1990, after the mildest winter of the century. The material is based upon plankton samples collected at 77 stations, covering the entire German Bight. Eight species were identified, as well as larvae of Palaemonidae and Processa-juveniles. Processa nouveli holthuisi (53.0%) and P. modica (31.3%) were predominant in the collection. The distribution of the two species was clearly separated: the main concentration of P. nouveli holthuisi (peak concentration of 1.94 larvae per m3) was confined to the northwest corner of the German Bight, while a majority of P. modica larvae (peak concentration of 0.54 larvae per m3) occurred at the southwesterly stations. The spatial distribution of Caridion steveni and Eualus occultus around Helgoland indicates the presence of an adult population at the only rocky island in the study area. Other taxa, such as larvae of Palaemonidae and juvenile Pandalina brevirostris were collected exclusively in estuarine habitats. Based upon both the results of the present study and comparable data, we conclude that developmental stages of ten non-crangonid species, as well as representatives of Palaemonidae, can be expected to occur in the plankton of the German Bight. The extremely mild temperatures of the preceding winter may have been, in part, responsible for the relatively high densities of some taxa encountered during our plankton survey. We assume that warm winter temperatures favour the immigration, reproduction and survival of cold-sensitive species.

Composition and structure of the parasite faunas of cod, Gadus morhua L. (Teleostei: Gadidae), in the North East Atlantic.

PubMed

Perdiguero-Alonso, Diana; Montero, Francisco E; Raga, Juan Antonio; Kostadinova, Aneta

2008-07-18

Although numerous studies on parasites of the Atlantic cod, Gadus morhua L. have been conducted in the North Atlantic, comparative analyses on local cod parasite faunas are virtually lacking. The present study is based on examination of large samples of cod from six geographical areas of the North East Atlantic which yielded abundant baseline data on parasite distribution and abundance. A total of 826 fish was sampled in the Baltic, Celtic, Irish and North seas, Icelandic waters and Trondheimsfjord (Norway) in 2002 (spring and autumn) and 2003 (spring). The gills and internal organs (oesophagus, stomach, intestine, pyloric caeca, liver, heart, spleen, gall bladder and gonads) were examined for macroparasites following a standardised protocol. The taxonomic consistency of the identification was ensured thorough the entire study. We discuss some problems in parasite identification, outline the composition of the parasite faunas in cod in the six North East Atlantic regions, provide novel data on parasite prevalence and abundance and a comparative assessment of the structure of the regional parasite faunas with respect to the higher-level taxonomic groupings, host specificity and zoogeographical distribution of the parasites. Altogether 57 different parasite forms were found including seven new host records (Diclidophora merlangi, Rhipidocotyle sp., Fellodistomum sp., Steringotrema sp., Cucullanus sp., Spinitectus sp., and Chondracanthus ornatus). The predominant groups of cod parasites were trematodes (19 species) and nematodes (13 species) including larval anisakids which comprised 58.2% of the total number of individuals. Our study reveals relatively rich regional parasite faunas in cod from the North East Atlantic which are dominated by generalist parasites with Arcto-Boreal distribution. Further, it provides more detailed data on the distribution in the North East Atlantic of the majority of cod parasites which may serve as baselines for future studies on the effect of climate change. Based on the faunal comparisons, predictions can be made in relation to the structure and diversity of the parasite communities in the North East Atlantic regions studied.

[Sampling optimization for tropical invertebrates: an example using dung beetles (Coleoptera: Scarabaeinae) in Venezuela].

PubMed

Ferrer-Paris, José Rafael; Sánchez-Mercado, Ada; Rodríguez, Jon Paul

2013-03-01

The development of efficient sampling protocols is an essential prerequisite to evaluate and identify priority conservation areas. There are f ew protocols for fauna inventory and monitoring in wide geographical scales for the tropics, where the complexity of communities and high biodiversity levels, make the implementation of efficient protocols more difficult. We proposed here a simple strategy to optimize the capture of dung beetles, applied to sampling with baited traps and generalizable to other sampling methods. We analyzed data from eight transects sampled between 2006-2008 withthe aim to develop an uniform sampling design, that allows to confidently estimate species richness, abundance and composition at wide geographical scales. We examined four characteristics of any sampling design that affect the effectiveness of the sampling effort: the number of traps, sampling duration, type and proportion of bait, and spatial arrangement of the traps along transects. We used species accumulation curves, rank-abundance plots, indicator species analysis, and multivariate correlograms. We captured 40 337 individuals (115 species/morphospecies of 23 genera). Most species were attracted by both dung and carrion, but two thirds had greater relative abundance in traps baited with human dung. Different aspects of the sampling design influenced each diversity attribute in different ways. To obtain reliable richness estimates, the number of traps was the most important aspect. Accurate abundance estimates were obtained when the sampling period was increased, while the spatial arrangement of traps was determinant to capture the species composition pattern. An optimum sampling strategy for accurate estimates of richness, abundance and diversity should: (1) set 50-70 traps to maximize the number of species detected, (2) get samples during 48-72 hours and set trap groups along the transect to reliably estimate species abundance, (3) set traps in groups of at least 10 traps to suitably record the local species composition, and (4) separate trap groups by a distance greater than 5-10km to avoid spatial autocorrelation. For the evaluation of other sampling protocols we recommend to, first, identify the elements of sampling design that could affect the sampled effort (the number of traps, sampling duration, type and proportion of bait) and their spatial distribution (spatial arrangement of the traps) and then, to evaluate how they affect richness, abundance and species composition estimates.

A Scanning Transmission Electron Microscopy Method for Determining Manganese Composition in Welding Fume as a Function of Primary Particle Size

PubMed Central

Richman, Julie D.; Livi, Kenneth J.T.; Geyh, Alison S.

2011-01-01

Increasing evidence suggests that the physicochemical properties of inhaled nanoparticles influence the resulting toxicokinetics and toxicodynamics. This report presents a method using scanning transmission electron microscopy (STEM) to measure the Mn content throughout the primary particle size distribution of welding fume particle samples collected on filters for application in exposure and health research. Dark field images were collected to assess the primary particle size distribution and energy-dispersive X-ray and electron energy loss spectroscopy were performed for measurement of Mn composition as a function of primary particle size. A manual method incorporating imaging software was used to measure the primary particle diameter and to select an integration region for compositional analysis within primary particles throughout the size range. To explore the variation in the developed metric, the method was applied to 10 gas metal arc welding (GMAW) fume particle samples of mild steel that were collected under a variety of conditions. The range of Mn composition by particle size was −0.10 to 0.19 %/nm, where a positive estimate indicates greater relative abundance of Mn increasing with primary particle size and a negative estimate conversely indicates decreasing Mn content with size. However, the estimate was only statistically significant (p<0.05) in half of the samples (n=5), which all had a positive estimate. In the remaining samples, no significant trend was measured. Our findings indicate that the method is reproducible and that differences in the abundance of Mn by primary particle size among welding fume samples can be detected. PMID:21625364

A Scanning Transmission Electron Microscopy Method for Determining Manganese Composition in Welding Fume as a Function of Primary Particle Size.

PubMed

Richman, Julie D; Livi, Kenneth J T; Geyh, Alison S

2011-06-01

Increasing evidence suggests that the physicochemical properties of inhaled nanoparticles influence the resulting toxicokinetics and toxicodynamics. This report presents a method using scanning transmission electron microscopy (STEM) to measure the Mn content throughout the primary particle size distribution of welding fume particle samples collected on filters for application in exposure and health research. Dark field images were collected to assess the primary particle size distribution and energy-dispersive X-ray and electron energy loss spectroscopy were performed for measurement of Mn composition as a function of primary particle size. A manual method incorporating imaging software was used to measure the primary particle diameter and to select an integration region for compositional analysis within primary particles throughout the size range. To explore the variation in the developed metric, the method was applied to 10 gas metal arc welding (GMAW) fume particle samples of mild steel that were collected under a variety of conditions. The range of Mn composition by particle size was -0.10 to 0.19 %/nm, where a positive estimate indicates greater relative abundance of Mn increasing with primary particle size and a negative estimate conversely indicates decreasing Mn content with size. However, the estimate was only statistically significant (p<0.05) in half of the samples (n=5), which all had a positive estimate. In the remaining samples, no significant trend was measured. Our findings indicate that the method is reproducible and that differences in the abundance of Mn by primary particle size among welding fume samples can be detected.

Macrozooplankton biomass in a warm-core Gulf Stream ring: Time series changes in size structure, taxonomic composition, and vertical distribution

NASA Astrophysics Data System (ADS)

Davis, Cabell S.; Wiebe, Peter H.

1985-01-01

Macrozooplankton size structure and taxonomic composition in warm-core ring 82B was examined from a time series (March, April, June) of ring center MOCNESS (1 m) samples. Size distributions of 15 major taxonomic groups were determined from length measurements digitized from silhouette photographs of the samples. Silhouette digitization allows rapid quantification of Zooplankton size structure and taxonomic composition. Length/weight regressions, determined for each taxon, were used to partition the biomass (displacement volumes) of each sample among the major taxonomic groups. Zooplankton taxonomic composition and size structure varied with depth and appeared to coincide with the hydrographic structure of the ring. In March and April, within the thermostad region of the ring, smaller herbivorous/omnivorous Zooplankton, including copepods, crustacean larvae, and euphausiids, were dominant, whereas below this region, larger carnivores, such as medusae, ctenophores, fish, and decapods, dominated. Copepods were generally dominant in most samples above 500 m. Total macrozooplankton abundance and biomass increased between March and April, primarily because of increases in herbivorous taxa, including copepods, crustacean larvae, and larvaceans. A marked increase in total macrozooplankton abundance and biomass between April and June was characterized by an equally dramatic shift from smaller herbivores (1.0-3.0 mm) in April to large herbivores (5.0-6.0 mm) and carnivores (>15 mm) in June. Species identifications made directly from the samples suggest that changes in trophic structure resulted from seeding type immigration and subsequent in situ population growth of Slope Water zooplankton species.

Phorbin steryl esters in Black Sea sediment traps and sediments: A preliminary evaluation of their paleooceanographic potential

DOE Office of Scientific and Technical Information (OSTI.GOV)

King, L.L.; Repeta, D.J.

1994-10-01

The distributions of pyropheophorbide-a steryl esters in one-year deployments of sediment traps at two locations in the Black Sea are described. In nearly all trap samples, phorbin steryl esters (PSEs) contribute a significant portion of the total phorbin flux. The relative abundances of sterols esterified to pyropheophorbide-a varied throughout the year, and the authors suggest these changes result from the observed seasonal variation of phytoplankton species in the overlying water column. The distribution of free sterols in a one-year composite sediment trap sample closely approximates the distribution of sterols derived from the hydrolysis of sedimentary PSEs collected at an adjacentmore » site. From these results, they suggest that the distribution of sedimentary PSE sterols provides a record of sterol deposition to the sediment-water interface. Esterification of sterols to pyropheophorbide-a apparently prevents the preferential removal of 4-desmethyl sterols relative to 4-methyl sterols, and the reduction of stenols to stanols during degradation. Analysis of PSEs in a gravity core covering the last 8-10 Kyr shows that the abundance and distribution of PSEs change with downcore variations in sedimentology. Detailed analysis of PSEs in sediments may, therefore, provide a means to evaluate paleooceanographic changes in phytoplankton community structure and sterol early diagenesis. The synthesis, NMR, CI-MS, and visible spectroscopic properties of four abundance PSEs found in the Black Sea are also described.« less

Spatial-Temporal Survey and Occupancy-Abundance Modeling To Predict Bacterial Community Dynamics in the Drinking Water Microbiome

PubMed Central

Pinto, Ameet J.; Schroeder, Joanna; Lunn, Mary; Sloan, William

2014-01-01

ABSTRACT Bacterial communities migrate continuously from the drinking water treatment plant through the drinking water distribution system and into our built environment. Understanding bacterial dynamics in the distribution system is critical to ensuring that safe drinking water is being supplied to customers. We present a 15-month survey of bacterial community dynamics in the drinking water system of Ann Arbor, MI. By sampling the water leaving the treatment plant and at nine points in the distribution system, we show that the bacterial community spatial dynamics of distance decay and dispersivity conform to the layout of the drinking water distribution system. However, the patterns in spatial dynamics were weaker than those for the temporal trends, which exhibited seasonal cycling correlating with temperature and source water use patterns and also demonstrated reproducibility on an annual time scale. The temporal trends were driven by two seasonal bacterial clusters consisting of multiple taxa with different networks of association within the larger drinking water bacterial community. Finally, we show that the Ann Arbor data set robustly conforms to previously described interspecific occupancy abundance models that link the relative abundance of a taxon to the frequency of its detection. Relying on these insights, we propose a predictive framework for microbial management in drinking water systems. Further, we recommend that long-term microbial observatories that collect high-resolution, spatially distributed, multiyear time series of community composition and environmental variables be established to enable the development and testing of the predictive framework. PMID:24865557

[Distribution of aquatic birds in oxidation lagoons of La Paz city in South Baja California, Mexico].

PubMed

Zamora-Orozco, Elvia Margarita; Carmona, Roberto; Brabata, Georgina

2007-06-01

Taxonomic composition, spatial and temporal distribution of aquatic birds in oxidation lagoons (LO) of La Paz city in south Baja California, Mexico, were determined during 24 censuses realized in two-week intervals (April/98-March/99). There are five lagoons of5 Ha each and 17 ha of terrains constantly flooded that serve as feeding areas for cattle and birds. One hundred twenty three species were observed, 75 of which were aquatic birds. A total of 46 041 observations were made (average 1 918 birds/census). Richness and abundance of aquatic birds were influenced mainly by migration of anatids and sandpipers. The first group had the greatest abundance due to its affinity towards fresh water bodies. The terrains were the favorite sites of dabbling ducks (Anas) and sandpipers. In contrast, two of the most abundant species (Oxyura jamaicensis, 12.5% of all species, and Fulica americana, 8.8 %) restricted their presence to the oxidation lagoons. LO presented a bird structure of its own and atypical, according to the dryness of the region.

Thalassiosira spp. community composition shifts in response to chemical and physical forcing in the northeast Pacific Ocean

PubMed Central

Chappell, P. Dreux; Whitney, LeAnn P.; Haddock, Traci L.; Menden-Deuer, Susanne; Roy, Eric G.; Wells, Mark L.; Jenkins, Bethany D.

2013-01-01

Diatoms are genetically diverse unicellular photosynthetic eukaryotes that are key primary producers in the ocean. Many of the over 100 extant diatom species in the cosmopolitan genus Thalassiosira are difficult to distinguish in mixed populations using light microscopy. Here, we examine shifts in Thalassiosira spp. composition along a coastal to open ocean transect that encountered a 3-month-old Haida eddy in the northeast Pacific Ocean. To quantify shifts in Thalassiosira species composition, we developed a targeted automated ribosomal intergenic spacer analysis (ARISA) method to identify Thalassiosira spp. in environmental samples. As many specific fragment lengths are indicative of individual Thalassiosira spp., the ARISA method is a useful screening tool to identify changes in the relative abundance and distribution of specific species. The method also enabled us to assess changes in Thalassiosira community composition in response to chemical and physical forcing. Thalassiosira spp. community composition in the core of a 3-month-old Haida eddy remained largely (>80%) similar over a 2-week period, despite moving 24 km southwestward. Shifts in Thalassiosira species correlated with changes in dissolved iron (Fe) and temperature throughout the sampling period. Simultaneously tracking community composition and relative abundance of Thalassiosira species within the physical and chemical context they occurred allowed us to identify quantitative linkages between environmental conditions and community response. PMID:24065961

New Interstellar Dust Models Consistent with Interstellar Extinction, Emission and Abundances Constraints

NASA Technical Reports Server (NTRS)

Zubko, V.; Dwek, E.; Arendt, R. G.; Oegerle, William (Technical Monitor)

2001-01-01

We present new interstellar dust models that are consistent with both, the FUV to near-IR extinction and infrared (IR) emission measurements from the diffuse interstellar medium. The models are characterized by different dust compositions and abundances. The problem we solve consists of determining the size distribution of the various dust components of the model. This problem is a typical ill-posed inversion problem which we solve using the regularization approach. We reproduce the Li Draine (2001, ApJ, 554, 778) results, however their model requires an excessive amount of interstellar silicon (48 ppM of hydrogen compared to the 36 ppM available for an ISM of solar composition) to be locked up in dust. We found that dust models consisting of PAHs, amorphous silicate, graphite, and composite grains made up from silicates, organic refractory, and water ice, provide an improved fit to the extinction and IR emission measurements, while still requiring a subsolar amount of silicon to be in the dust. This research was supported by NASA Astrophysical Theory Program NRA 99-OSS-01.

Composition of abyssal macrofauna along the Vema Fracture Zone and the hadal Puerto Rico Trench, northern tropical Atlantic

NASA Astrophysics Data System (ADS)

Brandt, A.; Frutos, I.; Bober, S.; Brix, S.; Brenke, N.; Guggolz, T.; Heitland, N.; Malyutina, M.; Minzlaff, U.; Riehl, T.; Schwabe, E.; Zinkann, A.-C.; Linse, K.

2018-02-01

We analyzed composition and variations in benthic macrofaunal communities along a transect of the entire length of the Vema-Fracture Zone on board of RV Sonne (SO-237) between December 2014 and January 2015 in order to test whether the Mid-Atlantic Ridge serves as a barrier limiting benthic taxon distribution in the abyssal basins on both sides of the ridge or whether the fracture zone permits the migration of species between the western and eastern abyssal Atlantic basins. The Puerto Rico Trench, much deeper than the surrounding abyssal West Atlantic, was sampled to determine whether the biodiversity of its hadal macrofauna differs from that of the abyssal Atlantic. The composition of the macrofauna from the epibenthic sledge catches yielded a total of 21,332 invertebrates. Crustacea occurred most frequently (59%) with 12,538 individuals followed by Annelida (mostly Polychaeta) (26%) with 5491 individuals, Mollusca (7%) with 1458 individuals, Echinodermata (4%) with 778 individuals, Nematoda (2%) with 502 individuals and Chaetognatha (1%) with 152 and Porifera (1%) with 131 individuals. All other taxa occurred with overall less than ten individuals (Hemichordata, Phoronida, Priapulida, Brachiopoda, invertebrate Chordata, Echiurida, Foraminifera (here refereed to macrofaunal Komokiacea only), Chelicerata, Platyhelminthes). Within the Crustacea, Peracarida (62.6%) with 7848 individuals and Copepoda (36.1%) with 44,526 individuals were the most abundant taxa. Along the abyssal Vema-Fracture Zone macrofaunal abundances (ind./1000 m2) were generally higher on the eastern side, while the highest normalized abundance value was reported in the Puerto Rico Trench at abyssal station 14-1 2313 individuals/1000 m2. The lowest abundance was reported at station 11-4 with 120 ind./1000 m2 located at the western side of the Vema-Fracture Zone. The number of major macrofaunal taxa (phylum, class) ranged between five (stations 12-5, 13-4 and 13-5 at hadal depths in the Puerto Rico Trench) and 14 (station 9-8) in the western abyssal basin of the Vema-Fracture Zone. Differences are seen in the distribution of Porifera at macrofaunal level between eastern and western sides of the Vema-Fracture Zone. Macrofaunal composition of the study area is compared with data from other expeditions in the Atlantic and the northwest Pacific Ocean.

Mesozooplankton abundance and distribution in association with hydrography on Hanna Shoal, NE Chukchi Sea, during August 2012 and 2013

NASA Astrophysics Data System (ADS)

Ashjian, Carin J.; Campbell, Robert G.; Gelfman, Celia; Alatalo, Philip; Elliott, Stephen M.

2017-10-01

Hanna Shoal, in the northeastern Chukchi Sea, is potentially vulnerable to ecosystem disruption under ongoing climate change, however aspects of its ecology, particularly of its zooplankton, have been poorly understood. Mesozooplankton distribution, taxonomic composition, and abundance were described from across Hanna Shoal in August 2012 and 2013 as part of the multidisciplinary COMIDA Hanna Shoal Program. Zooplankton were collected using vertical tows of paired Bongo nets equipped with 150-μm and 500-μm mesh nets; samples from the 150-μm mesh nets were enumerated to identify and count taxa, copepod species, and copepod life stages. Haplotypes of the mitochondrial cytochrome c oxidase I (mtCOI) gene were used to differentiate Bering and Arctic haplotype groups of the copepod Calanus glacialis and to differentiate C. glacialis and its close congener C. marshallae. The meroplankton, particularly bivalve larvae and in 2012 echinoderm larvae, were an important component of the zooplankton and were of greater abundance on the eastern portion of the Shoal than elsewhere. Regions identified on the basis of different taxonomic compositions were associated with different water masses and current pathways. The northeast corner of the Shoal in particular was distinct from the remainder of the Shoal and from Barrow Canyon, with both different life stage compositions and unique Arctic haplotypes of the mtCOI gene for C. glacialis/marshallae, suggesting populations at those locations originated in the Arctic Ocean rather than the Bering Sea. Bering Sea Summer water, and intrinsic plankton, was observed in the southwest portion of the Shoal. Comparisons with historic and recent studies done near Hanna Shoal demonstrated that similar plankton compositions were present across a broad region of the Chukchi Sea and that abundances of the copepod C. glacialis appear to be increasing on the time scale of decades, potentially through increased input from the northern Bering Sea. Because the Chukchi Sea is highly advective, it is likely that zooplankton populations over Hanna Shoal are lost to the Canada Basin to the north and must be re-established annually through input from the northern Bering Sea. Under this scenario, enhancement of a resident Hanna Shoal zooplankton community that would retain a significant proportion of the primary production in the water column is unlikely.

[Effects of macro-jellyfish abundance dynamics on fishery resource structure in the Yangtze River estuary and its adjacent waters].

PubMed

Shan, Xiu-Juan; Zhuang, Zhi-Meng; Jin, Xian-Shi; Dai, Fang-Qun

2011-12-01

Based on the bottom trawl survey data in May 2007 and May and June 2008, this paper analyzed the effects of the abundance dynamics of macro-jellyfish on the species composition, distribution, and abundance of fishery resource in the Yangtze River estuary and its adjacent waters. From May 2007 to June 2008, the average catch per haul and the top catch per haul of macro-jellyfish increased, up to 222.2 kg x h(-1) and 1800 kg x h(-1) in June 2008, respectively. The macro-jellyfish were mainly distributed in the areas around 50 m isobath, and not beyond 100 m isobath where was the joint front of the coastal waters of East China Sea, Yangtze River runoff, and Taiwan Warm Current. The main distribution area of macro-jellyfish in June migrated northward, as compared with that in May, and the highest catches of macro-jellyfish in May 2007 and May 2008 were found in the same sampling station (122.5 degrees E, 28.5 degrees N). In the sampling stations with higher abundance of macro-jellyfish, the fishery abundance was low, and the fishery species also changed greatly, mainly composed by small-sized species (Trachurus japonicus, Harpadon nehereus, and Acropoma japonicum) and pelagic species (Psenopsis anomala, Octopus variabilis) and Trichiurus japonicus, and P. anomala accounted for 23.7% of the total catch in June 2008. Larimichthys polyactis also occupied higher proportion of the total catch in sampling stations with higher macro-jellyfish abundance, but the demersal species Lophius litulon was not found, and a few crustaceans were collected. This study showed that macro-jellyfish had definite negative effects on the fishery community structure and abundance in the Yangtze River estuary fishery ecosystem, and further, changed the energy flow patterns of the ecosystem through cascading trophic interactions. Therefore, macro-jellyfish was strongly suggested to be an independent ecological group when the corresponding fishery management measures were considered.

Spatial and seasonal distribution of macroinvertebrates in high altitude reservoir (Beyler Reservoir, Turkey)

NASA Astrophysics Data System (ADS)

Findik, Özlem

2013-09-01

A highland reservoir in the West Black Sea region of Turkey which belongs to the Mediterranean climatic zone was examined. Both littoral and profundal zones were sampled from October 2009 to September 2010, to determine taxonomic composition, biodiversity and abundance of benthic invertebrates as well as the seasonal variation of these measures. A total of 35 taxa were identified, of which 12 belong to Chironomidae and 10 to Oligochaeta groups. The highest diversity and abundance of benthic macroinvertebrates were found at the littoral stations. Macroinvertebrates showed significant positive correlations with water temperature and NO2 and NO3 concentrations, and negative correlation with dissolved oxygen.

Thermal affinity as the dominant factor changing Mediterranean fish abundances.

PubMed

Givan, Or; Edelist, Dor; Sonin, Oren; Belmaker, Jonathan

2018-01-01

Recent decades have seen profound changes in species abundance and community composition. In the marine environment, the major anthropogenic drivers of change comprise exploitation, invasion by nonindigenous species, and climate change. However, the magnitude of these stressors has been widely debated and we lack empirical estimates of their relative importance. In this study, we focused on Eastern Mediterranean, a region exposed to an invasion of species of Red Sea origin, extreme climate change, and high fishing pressure. We estimated changes in fish abundance using two fish trawl surveys spanning a 20-year period, and correlated these changes with estimated sensitivity of species to the different stressors. We estimated sensitivity to invasion using the trait similarity between indigenous and nonindigenous species; sensitivity to fishing using a published composite index based on the species' life-history; and sensitivity to climate change using species climatic affinity based on occurrence data. Using both a meta-analytical method and random forest analysis, we found that for shallow-water species the most important driver of population size changes is sensitivity to climate change. Species with an affinity to warm climates increased in relative abundance and species with an affinity to cold climates decreased suggesting a strong response to warming local sea temperatures over recent decades. This decrease in the abundance of cold-water-associated species at the trailing "warm" end of their distribution has been rarely documented. Despite the immense biomass of nonindigenous species and the presumed high fishing pressure, these two latter factors seem to have only a minor role in explaining abundance changes. The decline in abundance of indigenous species of cold-water origin indicates a future major restructuring of fish communities in the Mediterranean in response to the ongoing warming, with unknown impacts on ecosystem function. © 2017 John Wiley & Sons Ltd.

Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats

PubMed Central

Chiang, Edna; Schmidt, Marian L.; Berry, Michelle A.; Biddanda, Bopaiah A.; Burtner, Ashley; Johengen, Thomas H.; Palladino, Danna

2018-01-01

The bacterial phylum Verrucomicrobia was formally described two decades ago and originally believed to be a minor member of many ecosystems; however, it is now recognized as ubiquitous and abundant in both soil and aquatic systems. Nevertheless, knowledge of the drivers of its relative abundance and within-phylum habitat preferences remains sparse, especially in lake systems. Here, we documented the distribution of Verrucomicrobia in 12 inland lakes in Southeastern Michigan, a Laurentian Great Lake (Lake Michigan), and a freshwater estuary, which span a gradient in lake sizes, depths, residence times, and trophic states. A wide range of physical and geochemical parameters was covered by sampling seasonally from the surface and bottom of each lake, and by separating samples into particle-associated and free-living fractions. On average, Verrucomicrobia was the 4th most abundant phylum (range 1.7–41.7%). Fraction, season, station, and depth explained up to 70% of the variance in Verrucomicrobia community composition and preference for these habitats was phylogenetically conserved at the class-level. When relative abundance was linearly modeled against environmental data, Verrucomicrobia and non-Verrucomicrobia bacterial community composition correlated to similar quantitative environmental parameters, although there were lake system-dependent differences and > 55% of the variance remained unexplained. A majority of the phylum exhibited preference for the particle-associated fraction and two classes (Opitutae and Verrucomicrobiae) were identified to be more abundant during the spring season. This study highlights the high relative abundance of Verrucomicrobia in north temperate lake systems and expands insights into drivers of within-phylum habitat preferences of the Verrucomicrobia. PMID:29590198

Retrieving the hydrous minerals on Mars by sparse unmixing and the Hapke model using MRO/CRISM data

NASA Astrophysics Data System (ADS)

Lin, Honglei; Zhang, Xia

2017-05-01

The hydrous minerals on Mars preserve records of potential past aqueous activity. Quantitative information regarding mineralogical composition would enable a better understanding of the formation processes of these hydrous minerals, and provide unique insights into ancient habitable environments and the geological evolution of Mars. The Compact Reconnaissance Imaging Spectrometer for Mars (CRISM) has the advantage of both a high spatial and spectral resolution, which makes it suitable for the quantitative analysis of minerals on Mars. However, few studies have attempted to quantitatively retrieve the mineralogical composition of hydrous minerals on Mars using visible-infrared (VISIR) hyperspectral data due to their distribution characteristics (relatively low concentrations, located primarily in Noachian terrain, and unclear or unknown background minerals) and limitations of the spectral unmixing algorithms. In this study, we developed a modified sparse unmixing (MSU) method, combining the Hapke model with sparse unmixing. The MSU method considers the nonlinear mixed effects of minerals and avoids the difficulty of determining the spectra and number of endmembers from the image. The proposed method was tested successfully using laboratory mixture spectra and an Airborne Visible Infrared Imaging Spectrometer (AVIRIS) image of the Cuprite site (Nevada, USA). Then it was applied to CRISM hyperspectral images over Gale crater. Areas of hydrous mineral distribution were first identified by spectral features of water and hydroxyl absorption. The MSU method was performed on these areas, and the abundances were retrieved. The results indicated that the hydrous minerals consisted mostly of hydrous silicates, with abundances of up to 35%, as well as hydrous sulfates, with abundances ≤10%. Several main subclasses of hydrous minerals (e.g., Fe/Mg phyllosilicate, prehnite, and kieserite) were retrieved. Among these, Fe/Mg- phyllosilicate was the most abundant, with abundances ranging up to almost 30%, followed by prehnite and kieserite, with abundances lower than 15%. Our results are consistent with related research and in situ analyses of data from the rover Curiosity; thus, our method has the potential to be widely used for quantitative mineralogical mapping at the global scale of the surface of Mars.

Unanticipated Geochemical and Microbial Community Structure under Seasonal Ice Cover in a Dilute, Dimictic Arctic Lake.

PubMed

Schütte, Ursel M E; Cadieux, Sarah B; Hemmerich, Chris; Pratt, Lisa M; White, Jeffrey R

2016-01-01

Despite most lakes in the Arctic being perennially or seasonally frozen for at least 40% of the year, little is known about microbial communities and nutrient cycling under ice cover. We assessed the vertical microbial community distribution and geochemical composition in early spring under ice in a seasonally ice-covered lake in southwest Greenland using amplicon-based sequencing that targeted 16S rRNA genes and using a combination of field and laboratory aqueous geochemical methods. Microbial communities changed consistently with changes in geochemistry. Composition of the abundant members responded strongly to redox conditions, shifting downward from a predominantly heterotrophic aerobic community in the suboxic waters to a heterotrophic anaerobic community in the anoxic waters. Operational taxonomic units (OTUs) of Sporichthyaceae, Comamonadaceae, and the SAR11 Clade had higher relative abundances above the oxycline and OTUs within the genus Methylobacter, the phylum Lentisphaerae, and purple sulfur bacteria (PSB) below the oxycline. Notably, a 13-fold increase in sulfide at the oxycline was reflected in an increase and change in community composition of potential sulfur oxidizers. Purple non-sulfur bacteria were present above the oxycline and green sulfur bacteria and PSB coexisted below the oxycline, however, PSB were most abundant. For the first time we show the importance of PSB as potential sulfur oxidizers in an Arctic dimictic lake.

Differences in coprophilous beetle communities structure in Sierra de Minas (Uruguay): a mosaic landscape.

PubMed

González-Vainer, Patricia; Morelli, E; Defeo, O

2012-10-01

Coprophilous beetles represent an abundant and rich group with critical importance in the functioning of terrestrial ecosystems. Most coprophagous beetles have a stenotopic distribution in relation to vegetation types. Because of this, they are usually very sensitive to environmental changes and are considered well suited as bioindicator organisms. The aim of this study was to analyze variations in coprophilous beetle assemblages in natural and anthropogenic habitats. Coprophilous beetle communities were sampled monthly for 1 year using pitfall traps baited with cow dung, in native xeric upland forests, 15-years-old plantations of Pinus elliottii and pastures in Sierra de Minas, Lavalleja, Uruguay. A total of 7,436 beetles were caught and identified to species or morphospecies level. The most abundant families were Aphodiidae, Scarabaeidae, and Staphylinidae. Differences in species richness, abundance, Shannon index, evenness, and dominance were detected between habitats. Abundances of most frequent families were significantly higher in both kinds of forests. Species richness and diversity of Aphodiidae and Staphylinidae were higher in forests, while Scarabaeidae showed the highest richness and diversity in pine plantations. Species composition significantly differed between habitats. Uroxys terminalis Waterhouse and Ataenius perforatus Harold typified the assemblages in native forests and pine plantations and also discriminated both communities because of their differential pattern of abundance between habitats. Typifying species in pastures were Onthophagus hirculus, Ateuchus robustus (Harold), and Ataenius platensis Blanchard. Habitat type had a strong effect on the coprophilous beetle community structure and composition.

Lunar Prospector: overview.

PubMed

Binder, A B

1998-09-04

Lunar Prospector is providing a global map of the composition of the moon and analyzing the moon's gravity and magnetic fields. It has been in a polar orbit around the moon since 16 January 1998. Neutron flux data show that there is abundant H, and hence probably abundant water ice, in the lunar polar regions. Gamma-ray and neutron data reveal the distribution of Fe, Ti, and other major and trace elements on the moon. The data delineate the global distributions of a key trace element-rich component of lunar materials called KREEP and of the major rock types. Magnetic mapping shows that the lunar magnetic fields are strong antipodal to Mare Imbrium and Mare Serenitatis and has discovered the smallest known magnetosphere, magnetosheath, and bow shock complex in the solar system. Gravity mapping has delineated seven new gravity anomalies and shown that the moon has a small Fe-rich core of about 300 km radius.

ISRNA: an integrative online toolkit for short reads from high-throughput sequencing data.

PubMed

Luo, Guan-Zheng; Yang, Wei; Ma, Ying-Ke; Wang, Xiu-Jie

2014-02-01

Integrative Short Reads NAvigator (ISRNA) is an online toolkit for analyzing high-throughput small RNA sequencing data. Besides the high-speed genome mapping function, ISRNA provides statistics for genomic location, length distribution and nucleotide composition bias analysis of sequence reads. Number of reads mapped to known microRNAs and other classes of short non-coding RNAs, coverage of short reads on genes, expression abundance of sequence reads as well as some other analysis functions are also supported. The versatile search functions enable users to select sequence reads according to their sub-sequences, expression abundance, genomic location, relationship to genes, etc. A specialized genome browser is integrated to visualize the genomic distribution of short reads. ISRNA also supports management and comparison among multiple datasets. ISRNA is implemented in Java/C++/Perl/MySQL and can be freely accessed at http://omicslab.genetics.ac.cn/ISRNA/.

Rarity and diversity in forest ant assemblages of Great Smoky Mountains National Park

USGS Publications Warehouse

Lessard, J.-P.; Dunn, R.R.; Parker, C.R.; Sanders, N.J.

2007-01-01

We report on a systematic survey of the ant fauna occurring in hardwood forests in the Great Smoky Mountains National Park. At 22-mixed hardwood sites, we collected leaf-litter ant species using Winkler samplers. At eight of those sites, we also collected ants using pitfall and Malaise traps. In total, we collected 53 ant species. As shown in other studies, ant species richness tended to decline with increasing elevation. Leaf-litter ant assemblages were also highly nested. Several common species were both locally abundant and had broad distributions, while many other species were rarely detected. Winkler samplers, pitfall traps, and Malaise traps yielded samples that differed in composition, but not richness, from one another. Taken together, our work begins to illuminate the factors that govern the diversity, distribution, abundance, and perhaps rarity of ants of forested ecosystems in the Great Smoky Mountains National Park.

Performance and population dynamics of a native understory herb differ between young and old forest stands in the Southern Appalachians

Treesearch

Michelle M. Jackson; Scott M. Pearson; Monica G. Turner

2013-01-01

Anthropogenic disturbances (e.g., logging) can strongly affect the composition and structure of forest understory herb communities, with land-use legacies often persisting for decades or even centuries. Many studies of forest plant response to land-use history have focused on species distributions and abundances, and argued broadly for either dispersal or establishment...

Landscape-and regional-scale shifts in forest composition under climate change in the Central Hardwood Region of the United States

Treesearch

Wen J. Wang; Hong S. He; Frank R. Thompson; Jacob S. Fraser; William D. Dijak

2016-01-01

Tree species distribution and abundance are affected by forces operating at multiple scales. Niche and biophysical process models have been commonly used to predict climate change effects at regional scales, however, these models have limited capability to include site-scale population dynamics and landscape- scale disturbance and dispersal. We applied a landscape...

The bacteriological composition of biomass recovered by flushing an operational drinking water distribution system.

PubMed

Douterelo, I; Husband, S; Boxall, J B

2014-05-01

This study investigates the influence of pipe characteristics on the bacteriological composition of material mobilised from a drinking water distribution system (DWDS) and the impact of biofilm removal on water quality. Hydrants in a single UK Distribution Management Area (DMA) with both polyethylene and cast iron pipe sections were subjected to incremental increases in flow to mobilise material from the pipe walls. Turbidity was monitored during these operations and water samples were collected for physico-chemical and bacteriological analysis. DNA was extracted from the material mobilised into the bulk water before and during flushing. Bacterial tag-encoded 454 pyrosequencing was then used to characterize the bacterial communities present in this material. Turbidity values were high in the samples from cast iron pipes. Iron, aluminium, manganese and phosphate concentrations were found to correlate to observed turbidity. The bacterial community composition of the material mobilised from the pipes was significantly different between plastic and cast iron pipe sections (p < 0.5). High relative abundances of Alphaproteobacteria (23.3%), Clostridia (10.3%) and Actinobacteria (10.3%) were detected in the material removed from plastic pipes. Sequences related to Alphaproteobacteria (22.8%), Bacilli (16.6%), and Gammaproteobacteria (1.4%) were predominant in the samples obtained from cast iron pipes. The highest species richness and diversity were found in the samples from material mobilised from plastic pipes. Spirochaeta spp., Methylobacterium spp. Clostridium spp. and Desulfobacterium spp., were the most represented genera in the material obtained prior to and during the flushing of the plastic pipes. In cast iron pipes a high relative abundance of bacteria able to utilise different iron and manganese compounds were found such as Lysinibacillus spp., Geobacillus spp. and Magnetobacterium spp. Copyright © 2014 Elsevier Ltd. All rights reserved.

Nematode diversity, abundance and community structure 50 years after the formation of the volcanic island of Surtsey

NASA Astrophysics Data System (ADS)

Ilieva-Makulec, K.; Bjarnadottir, B.; Sigurdsson, B. D.

2014-10-01

The soil nematode fauna can give important insights into soil development and other habitat changes that occur during primary succession. We investigated the generic composition, density, distribution and community structure of nematodes 50 years after the formation of a pristine volcanic island, Surtsey, Iceland. Part of the island has received additional nutrient inputs from seagulls breeding there since 1985, while the reminder has been much less affected and is at present found at a different successional sere. In total, 25 genera of nematodes were identified, of which 14 were reported on Surtsey for the first time. Nematode communities were more diverse in the more infertile area outside the gull colony, where 24 genera were found, compared to 18 inside. The trophic structure of the nematode communities showed relatively higher abundance of fungal feeders in the infertile areas, but relatively more bacterial- and plant-feeders inside the colony. Nematode abundance in surface soil was, however, significantly higher within the gull colony, with 16.7 ind. cm-2 compared to 3.6 ind. cm-2 outside. A multivariate analysis indicated that the nematode abundance and distribution on Surtsey were most strongly related to the soil C : N ratio, soil acidity, plant cover and biomass, soil temperature and soil depth.

Distribution, stock composition and timing, and tagging response of wild Chinook Salmon returning to a large, free-flowing river basin

USGS Publications Warehouse

Eiler, John H.; Masuda, Michele; Spencer, Ted R.; Driscoll, Richard J.; Schreck, Carl B.

2014-01-01

Chinook Salmon Oncorhynchus tshawytscha returns to the Yukon River basin have declined dramatically since the late 1990s, and detailed information on the spawning distribution, stock structure, and stock timing is needed to better manage the run and facilitate conservation efforts. A total of 2,860 fish were radio-tagged in the lower basin during 2002–2004 and tracked upriver. Fish traveled to spawning areas throughout the basin, ranging from several hundred to over 3,000 km from the tagging site. Similar distribution patterns were observed across years, suggesting that the major components of the run were identified. Daily and seasonal composition estimates were calculated for the component stocks. The run was dominated by two regional components comprising over 70% of the return. Substantially fewer fish returned to other areas, ranging from 2% to 9% of the return, but their collective contribution was appreciable. Most regional components consisted of several principal stocks and a number of small, spatially isolated populations. Regional and stock composition estimates were similar across years even though differences in run abundance were reported, suggesting that the differences in abundance were not related to regional or stock-specific variability. Run timing was relatively compressed compared with that in rivers in the southern portion of the species’ range. Most stocks passed through the lower river over a 6-week period, ranging in duration from 16 to 38 d. Run timing was similar for middle- and upper-basin stocks, limiting the use of timing information for management. The lower-basin stocks were primarily later-run fish. Although differences were observed, there was general agreement between our composition and timing estimates and those from other assessment projects within the basin, suggesting that the telemetry-based estimates provided a plausible approximation of the return. However, the short duration of the run, complex stock structure, and similar stock timing complicate management of Yukon River returns.

Ion composition and upstream solar wind observations at comet Giacobini-Zinner

NASA Astrophysics Data System (ADS)

Coplan, M. A.; Ogilvie, K. W.; A'Hearn, M. F.; Bochsler, P.; Geiss, J.

1987-01-01

The observations by the ion composition instrument (ICI) on the ICE spacecraft made during the encounter with comet P/Giacobini-Zinner (Ogilvie et al., 1986) are discussed in detail. Solar wind He-4(2+) kinetic temperatures, densities, and velocities before, during, and after the encounter are presented. These data combined with He-4(2+) velocity distributions provide evidence for the existence of a thick diffuse shock. Relative abundances of water group ions and CO(+) are derived along with an estimate of the abundance of an ion with M/Q = 24 + or - 1 amu/e. The ICI data are compared with electron data from two other experiments (Bame et al., 1986; Meyer-Vernet et al., 1986) and found to be in reasonable agreement in the region outside the tail. Spectroscopic data for several neutral and ionic species are compared with the ICI results for the water group ions and CO(+). The spectroscopic data are also used to eliminate Mg(+) and CN(+) as candidates for the M/Q = 24 peak. The two most likely candidates are C2(+) and Na(+), but neither photoionization of parent neutrals nor sputtering from dust grains is sufficient to explain the observed abundance relative to H2O(+).

Dynamic succession of substrate-associated bacterial composition and function during Ganoderma lucidum growth

PubMed Central

Li, Qiang; Zou, Jie; Tan, Hao; Tan, Wei; Peng, Weihong

2018-01-01

Background Ganoderma lucidum, a valuable medicinal fungus, is widely distributed in China. It grows alongside with a complex microbial ecosystem in the substrate. As sequencing technology advances, it is possible to reveal the composition and functions of substrate-associated bacterial communities. Methods We analyzed the bacterial community dynamics in the substrate during the four typical growth stages of G. lucidum using next-generation sequencing. Results The physicochemical properties of the substrate (e.g. acidity, moisture, total nitrogen, total phosphorus and total potassium) changed between different growth stages. A total of 598,771 sequences from 12 samples were obtained and assigned to 22 bacterial phyla. Proteobacteria and Firmicutes were the dominant phyla. Bacterial community composition and diversity significantly differed between the elongation stage and the other three growth stages. LEfSe analysis revealed a large number of bacterial taxa (e.g. Bacteroidetes, Acidobacteria and Nitrospirae) with significantly higher abundance at the elongation stage. Functional pathway prediction uncovered significant abundance changes of a number of bacterial functional pathways between the elongation stage and other growth stages. At the elongation stage, the abundance of the environmental information processing pathway (mainly membrane transport) decreased, whereas that of the metabolism-related pathways increased. Discussion The changes in bacterial community composition, diversity and predicted functions were most likely related to the changes in the moisture and nutrient conditions in the substrate with the growth of G. lucidum, particularly at the elongation stage. Our findings shed light on the G. lucidum-bacteria-substrate relationships, which should facilitate the industrial cultivation of G. lucidum. PMID:29915697

Montane-breeding bird distribution and abundance across national parks of southwestern Alaska

USGS Publications Warehouse

Amundson, Courtney L.; Handel, Colleen M.; Ruthrauff, Daniel R.; Tibbitts, T. Lee; Gill, Robert E.

2018-01-01

Between 2004 and 2008, biologists conducted an inventory of breeding birds during May–June primarily in montane areas (>100 m above sea level) in Aniakchak National Monument and Preserve (Aniakchak NMP), Katmai National Park and Preserve (Katmai NPP), and Lake Clark National Park and Preserve (Lake Clark NPP) in southwestern Alaska. Observers conducted 1,021 point counts along 169 transects within 63 10-km × 10-km plots that were randomly selected and stratified by ecological subsection. We created hierarchical N-mixture models to estimate detection probability and abundance for 15 species, including 12 passerines, 2 galliforms, and 1 shorebird. We first modeled detection probability relative to observer, date within season, and proportion of dense vegetation cover around the point, then modeled abundance as a function of land cover composition (proportion of seven coarse-scale land cover types) within 300 m of the survey point. Land cover relationships varied widely among species but most showed selection for low to tall shrubs (0.2–5 m tall) and an avoidance of alpine and 2 dwarf shrub–herbaceous cover types. After adjusting for species not observed, we estimated a minimum of 107 ± 9 species bred in the areas surveyed within the three parks combined. Species richness was negatively associated with elevation and associated land cover types. At comparable levels of survey effort (n = 721 birds detected), species richness was greatest in Lake Clark NPP (75 ± 12 species), lowest in Aniakchak NMP (45 ± 6 species), and intermediate at Katmai NPP (59 ± 10 species). Species richness was similar at equivalent survey effort (n = 973 birds detected) within the Lime Hills, Alaska Range, and Alaska Peninsula ecoregions (68 ± 8; 79 ± 11; 67 ± 11, respectively). Species composition was similar across all three parks and across the three major ecoregions (Alaska Range, Alaska Peninsula, Lime Hills) that encompass them. Our results provide baseline estimates of relative abundance and models of abundance and species richness relative to land cover that can be used to assess future changes in avian distribution. Additionally, these subarctic montane parks may serve as signals of landscape change and barometers for the assessment of population and distributional changes as a result of warming temperatures and changing precipitation patterns.

Cutting through the smoke: the diversity of microorganisms in deep-sea hydrothermal plumes.

PubMed

Djurhuus, Anni; Mikalsen, Svein-Ole; Giebel, Helge-Ansgar; Rogers, Alex D

2017-04-01

There are still notable gaps regarding the detailed distribution of microorganisms between and within insular habitats such as deep-sea hydrothermal vents. This study investigates the community composition of black smoker vent microorganisms in the Southern Hemisphere, and changes thereof along a spatial and chemical gradient ranging from the vent plume to surrounding waters. We sampled two hydrothermal vent fields, one at the South West Indian Ridge (SWIR), the other at the East Scotia Ridge (ESR). Samples were collected across vent fields at varying vertical distances from the origin of the plumes. The microbial data were sequenced on an Illumina MiSeq platform for the 16SrRNA gene. A substantial amount of vent-specific putative chemosynthetic microorganisms were found, particularly in samples from focused hydrothermal venting. Common vent-specific organisms from both vent fields were the genera Arcobacter , Caminibacter and Sulfurimonas from the Epsilonproteobacteria and the SUP05 group from the Gammaproteobacteria. There were no major differences in microbial composition between SWIR and ESR for focused plume samples. However, within the ESR the diffuse flow and focused samples differed significantly in microbial community composition and relative abundance. For Epsilonproteobacteria, we found evidence of niche-specificity to hydrothermal vent environments. This taxon decreased in abundance by three orders of magnitude from the vent orifice to background water. Epsilonproteobacteria distribution followed a distance-decay relationship as vent-effluents mixed with the surrounding seawater. This study demonstrates strong habitat affinity of vent microorganisms on a metre scale with distinct environmental selection.

Determing Lamprey Species Composition, Larval Distribution, and Adult Abundance in the Deschutes River, Oregon, Subbasin; 2005-2006 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Graham, Jennifer C.; Brun, Christopher V.

2006-05-01

Information about lamprey species composition, distribution, life history, abundance, habitat requirements, and exploitation in the lower Deschutes River Subbasin is extremely limited. During 2002, we began a multi-year study to assess the status of lamprey in the Deschutes River subbasin. The objectives of this project are to determine ammocoete (larval lamprey) distribution and associated habitats; Lampretra species composition; numbers of emigrants; adult escapement and harvest rates at Sherars Falls. This report describes the preliminary results of data collected during 2005. We continued documenting ammocoete (larval) habitat selection by surveying four perennial eastside tributaries to the Deschutes River (Warm Springs River,more » Badger, Beaver and Shitike creeks) within the known ammocoete distribution. The results of 2003-2005 sampling indicate that positive relationships exist between: presence of wood (P = < 0.001), depositional area (P = < 0.001), flow (P = < 0.001), and fine substrate (P = < 0.001). Out-migrants numbers were not estimated during 2005 due to our inability to recapture marked larvae. In Shitike Creek, ammocoete and microphthalmia out-migration peaked during November 2005. In the Warm Spring River, out-migration peaked for ammocoetes in April 2006 and December 2005 for microphthalmia. Samples of ammocoetes from each stream were retained in a permanent collection of future analysis. An escapement estimate was generated for adult Pacific lamprey in the lower Deschutes River using a two event mark-recapture experiment during run year 2005. A modified Peterson model was used to estimate the adult population of Pacific lamprey at 3,895 with an estimated escapement of 2,881 during 2005 (95% CI= 2,847; M = 143; C = 1,027 R = 37). A tribal creel was also conducted from mid-June through August. We estimated tribal harvest to be approximately 1,015 adult lamprey during 2005 (95% CI= +/- 74).« less

Equilibrium and non-equilibrium controls on the abundances of clumped isotopologues of methane during thermogenic formation in laboratory experiments: Implications for the chemistry of pyrolysis and the origins of natural gases

USGS Publications Warehouse

Shuai, Yanhua; Douglas, Peter M.J.; Zhang, Shuichang; Stolper, Daniel A.; Ellis, Geoffrey S.; Lawson, Michael; Lewan, Michael; Formolo, Michael; Mi, Jingkui; He, Kun; Hu, Guoyi; Eiler, John M.

2018-01-01

Multiply isotopically substituted molecules (‘clumped’ isotopologues) can be used as geothermometers because their proportions at isotopic equilibrium relative to a random distribution of isotopes amongst all isotopologues are functions of temperature. This has allowed measurements of clumped-isotope abundances to be used to constrain formation temperatures of several natural materials. However, kinetic processes during generation, modification, or transport of natural materials can also affect their clumped-isotope compositions. Herein, we show that methane generated experimentally by closed-system hydrous pyrolysis of shale or nonhydrous pyrolysis of coal yields clumped-isotope compositions consistent with an equilibrium distribution of isotopologues under some experimental conditions (temperature–time conditions corresponding to ‘low,’ ‘mature,’ and ‘over-mature’ stages of catagenesis), but can have non-equilibrium (i.e., kinetically controlled) distributions under other experimental conditions (‘high’ to ‘over-mature’ stages), particularly for pyrolysis of coal. Non-equilibrium compositions, when present, lead the measured proportions of clumped species to be lower than expected for equilibrium at the experimental temperature, and in some cases to be lower than a random distribution of isotopes (i.e., negative Δ18 values). We propose that the consistency with equilibrium for methane formed by relatively low temperature pyrolysis reflects local reversibility of isotope exchange reactions involving a reactant or transition state species during demethylation of one or more components of kerogen. Non-equilibrium clumped-isotope compositions occur under conditions where ‘secondary’ cracking of retained oil in shale or wet gas hydrocarbons (C2-5, especially ethane) in coal is prominent. We suggest these non-equilibrium isotopic compositions are the result of the expression of kinetic isotope effects during the irreversible generation of methane from an alkyl precursor. Other interpretations are also explored. These findings provide new insights into the chemistry of thermogenic methane generation, and may provide an explanation of the elevated apparent temperatures recorded by the methane clumped-isotope thermometer in some natural gases. However, it remains unknown if the laboratory experiments capture the processes that occur at the longer time and lower temperatures of natural gas formation.

Elemental composition of solar energetic particles. Ph.D. Thesis

NASA Technical Reports Server (NTRS)

Cook, W. R., III

1981-01-01

The Low Energy Telescopes on the Voyager spacecraft are used to measure the elemental composition (2 or = Z or = 28) and energy spectra (5 to 15 MeV/nucleon) of solar energetic particles (SEPs) in seven large flare events. Four flare events are selected which have SEP abundance ratios approximately independent of energy/nucleon. The abundances for these events are compared from flare to flare and are compared to solar abundances from other sources: spectroscopy of the photosphere and corona, and solar wind measurements. The four flare average SEP composition is significantly different from the solar composition determined by photospheric spectroscopy. The average SEP composition is in agreement with solar wind abundance results and with a number of recent coronal abundance measurements. The evidence for a common depletion of oxygen in SEPs, the corona and the solar wind relative to the photosphere suggest that the SEPs originate in the corona and that both the SEPs and solar wind sample a coronal composition which is significantly and persistently different from that of the photosphere.

Genome-Wide Association Studies of the Human Gut Microbiota.

PubMed

Davenport, Emily R; Cusanovich, Darren A; Michelini, Katelyn; Barreiro, Luis B; Ober, Carole; Gilad, Yoav

2015-01-01

The bacterial composition of the human fecal microbiome is influenced by many lifestyle factors, notably diet. It is less clear, however, what role host genetics plays in dictating the composition of bacteria living in the gut. In this study, we examined the association of ~200K host genotypes with the relative abundance of fecal bacterial taxa in a founder population, the Hutterites, during two seasons (n = 91 summer, n = 93 winter, n = 57 individuals collected in both). These individuals live and eat communally, minimizing variation due to environmental exposures, including diet, which could potentially mask small genetic effects. Using a GWAS approach that takes into account the relatedness between subjects, we identified at least 8 bacterial taxa whose abundances were associated with single nucleotide polymorphisms in the host genome in each season (at genome-wide FDR of 20%). For example, we identified an association between a taxon known to affect obesity (genus Akkermansia) and a variant near PLD1, a gene previously associated with body mass index. Moreover, we replicate a previously reported association from a quantitative trait locus (QTL) mapping study of fecal microbiome abundance in mice (genus Lactococcus, rs3747113, P = 3.13 x 10-7). Finally, based on the significance distribution of the associated microbiome QTLs in our study with respect to chromatin accessibility profiles, we identified tissues in which host genetic variation may be acting to influence bacterial abundance in the gut.

Rotations and Abundances of Blue Horizontal-Branch Stars in Globular Cluster M15.

PubMed

Behr; Cohen; McCarthy

2000-03-01

High-resolution optical spectra of 18 blue horizontal-branch stars in the globular cluster M15 indicate that their stellar rotation rates and photospheric compositions vary strongly as a function of effective temperature. Among the cooler stars in the sample, at Teff approximately 8500 K, metal abundances are in rough agreement with the canonical cluster metallicity, and the vsini rotations appear to have a bimodal distribution, with eight stars at vsini<15 km s-1 and two stars at vsini approximately 35 km s-1. Most of the stars at Teff>/=10,000 K, however, are slowly rotating, vsini<7 km s-1, and their iron and titanium are enhanced by a factor of 300 to solar abundance levels. Magnesium maintains a nearly constant abundance over the entire range of Teff, and helium is depleted by factors of 10-30 in three of the hotter stars. Diffusion effects in the stellar atmospheres are the most likely explanation for these large differences in composition. Our results are qualitatively very similar to those previously reported for M13 and NGC 6752, but with even larger enhancement amplitudes, presumably due to the increased efficiency of radiative levitation at lower intrinsic [Fe/H]. We also see evidence for faster stellar rotation explicitly preventing the onset of the diffusion mechanisms among a subset of the hotter stars.

Fine-scale distribution of zooplankton is linked to phytoplankton species composition and abundance in a North Norwegian fjord system

NASA Astrophysics Data System (ADS)

Norrbin, F.; Priou, P. D.; Varela, A. P.

2016-02-01

We studied the influence of dense layers of phytoplankton and aggregates on shaping the vertical distribution of zooplankton in a North Norwegian fjord using a Video Plankton Recorder (VPR). This instrument provided fine-scale vertical distribution (cm-m scale) of planktonic organisms as well as aggregates of marine snow in relation to environmental conditions. At the height - later stage of the spring phytoplankton bloom in May, the outer part of the fjord was dominated by Phaeocystis pouchetii, while diatoms (Chaetoceros spp.) were dominating in the innermost basin. Small copepods species like Pseudocalanus spp., Microsetella norvegica, and Oithona spp. prevailed over larger copepod species in the inner part of the fjord whereas the outer part was dominated by large copepods like Calanus finmarchicus. While the zooplankton where spread out over the water column during the early stage of the bloom, in May they were linked to the phytoplankton vertical distribution and in the winter situation they were found in deeper waters. Herbivorous zooplankton species were affected by phytoplankton species composition; C. finmarchicus and Pseudocalanus spp. avoided the dense layer of P. pouchetii while herbivorous zooplankton matched the distribution of the diatom-dominated bloom. Small, omnivorous copepod species like Microsetella sp., Oithona sp. and Pseudocalanus sp. were often associated with dense layers of snow aggregates. This distribution may provide a shelter from predators as well as a food source. Natural or anthropogenic-induced changes in phytoplankton composition and aggregate distribution may thus influence food-web interactions.

Microplastic contamination in the San Francisco Bay, California, USA.

PubMed

Sutton, Rebecca; Mason, Sherri A; Stanek, Shavonne K; Willis-Norton, Ellen; Wren, Ian F; Box, Carolynn

2016-08-15

Despite widespread detection of microplastic pollution in marine environments, data describing microplastic abundance in urban estuaries and microplastic discharge via treated municipal wastewater are limited. This study presents information on abundance, distribution, and composition of microplastic at nine sites in San Francisco Bay, California, USA. Also presented are characterizations of microplastic in final effluent from eight wastewater treatment plants, employing varying treatment technologies, that discharge to the Bay. With an average microplastic abundance of 700,000particles/km(2), Bay surface water appears to have higher microplastic levels than other urban waterbodies sampled in North America. Moreover, treated wastewater from facilities that discharge into the Bay contains considerable microplastic contamination. Facilities employing tertiary filtration did not show lower levels of contamination than those using secondary treatment. As textile-derived fibers were more abundant in wastewater, higher levels of fragments in surface water suggest additional pathways of microplastic pollution, such as stormwater runoff. Copyright © 2016 Elsevier Ltd. All rights reserved.

Net-phytoplankton communities in the Western Boundary Currents and their environmental correlations

NASA Astrophysics Data System (ADS)

Chen, Yunyan; Sun, Xiaoxia; Zhun, Mingliang

2018-03-01

This study investigated net-phytoplankton biomass, species composition, the phytoplankton abundance horizontal distribution, and the correlations between net-phytoplankton communities and mesoscale structure that were derived from the net samples taken from the Western Boundary Currents during summer, 2014. A total of 199 phytoplankton species belonging to 61 genera in four phyla were identified. The dominant species included Climacodium frauenfeldianum, Thalassiothrix longissima, Rhizosolenia styliformis var. styliformis, Pyrocystis noctiluca, Ceratium trichoceros, and Trichodesmium thiebautii. Four phytoplankton communities were divided by cluster analysis and the clusters were mainly associated with the North Equatorial Counter Current (NECC), the North Equatorial Current (NEC), the Subtropical Counter Current (STCC), and the Luzon Current (LC), respectively. The lowest phytoplankton cell abundance and the highest Trichodesmium filament abundance were recorded in the STCC region. The principal component analysis showed that T. thiebautii preferred warm and nutrient poor water. There was also an increase in phytoplankton abundance and biomass near 5°N in the NECC region, where they benefit from upwellings and eddies.

Abundance and composition of indigenous bacterial communities in a multi-step biofiltration-based drinking water treatment plant.

PubMed

Lautenschlager, Karin; Hwang, Chiachi; Ling, Fangqiong; Liu, Wen-Tso; Boon, Nico; Köster, Oliver; Egli, Thomas; Hammes, Frederik

2014-10-01

Indigenous bacterial communities are essential for biofiltration processes in drinking water treatment systems. In this study, we examined the microbial community composition and abundance of three different biofilter types (rapid sand, granular activated carbon, and slow sand filters) and their respective effluents in a full-scale, multi-step treatment plant (Zürich, CH). Detailed analysis of organic carbon degradation underpinned biodegradation as the primary function of the biofilter biomass. The biomass was present in concentrations ranging between 2-5 × 10(15) cells/m(3) in all filters but was phylogenetically, enzymatically and metabolically diverse. Based on 16S rRNA gene-based 454 pyrosequencing analysis for microbial community composition, similar microbial taxa (predominantly Proteobacteria, Planctomycetes, Acidobacteria, Bacteriodetes, Nitrospira and Chloroflexi) were present in all biofilters and in their respective effluents, but the ratio of microbial taxa was different in each filter type. This change was also reflected in the cluster analysis, which revealed a change of 50-60% in microbial community composition between the different filter types. This study documents the direct influence of the filter biomass on the microbial community composition of the final drinking water, particularly when the water is distributed without post-disinfection. The results provide new insights on the complexity of indigenous bacteria colonizing drinking water systems, especially in different biofilters of a multi-step treatment plant. Copyright © 2014 Elsevier Ltd. All rights reserved.

Coronal Elemental Abundances in Solar Emerging Flux Regions

NASA Astrophysics Data System (ADS)

Baker, Deborah; Brooks, David H.; van Driel-Gesztelyi, Lidia; James, Alexander W.; Démoulin, Pascal; Long, David M.; Warren, Harry P.; Williams, David R.

2018-03-01

The chemical composition of solar and stellar atmospheres differs from the composition of their photospheres. Abundances of elements with low first ionization potential (FIP) are enhanced in the corona relative to high-FIP elements with respect to the photosphere. This is known as the FIP effect and it is important for understanding the flow of mass and energy through solar and stellar atmospheres. We used spectroscopic observations from the Extreme-ultraviolet Imaging Spectrometer on board the Hinode observatory to investigate the spatial distribution and temporal evolution of coronal plasma composition within solar emerging flux regions inside a coronal hole. Plasma evolved to values exceeding those of the quiet-Sun corona during the emergence/early-decay phase at a similar rate for two orders of magnitude in magnetic flux, a rate comparable to that observed in large active regions (ARs) containing an order of magnitude more flux. During the late-decay phase, the rate of change was significantly faster than what is observed in large, decaying ARs. Our results suggest that the rate of increase during the emergence/early-decay phase is linked to the fractionation mechanism that leads to the FIP effect, whereas the rate of decrease during the later decay phase depends on the rate of reconnection with the surrounding magnetic field and its plasma composition.

A photometric study of globular clusters observed by the APOGEE survey

NASA Astrophysics Data System (ADS)

Mészáros, Szabolcs; García-Hernández, D. A.; Cassisi, Santi; Monelli, Matteo; Szigeti, László; Dell'Agli, Flavia; Derekas, Alíz; Masseron, Thomas; Shetrone, Matthew; Stetson, Peter; Zamora, Olga

2018-04-01

In this paper, we describe the photometric and spectroscopic properties of multiple populations in seven northern globular clusters. In this study, we employ precise ground-based photometry from the private collection of Stetson, space photometry from the Hubble Space Telescope (HST), literature abundances of Na and O, and Apache Point Observatory Galactic Evolution Experiment (APOGEE) survey abundances for Mg, Al, C, and N. Multiple populations are identified by their position in the CU, B, I -Vpseudo colour-magnitude diagram (pseudo-CMD) and confirmed with their chemical composition determined using abundances. We confirm the expectation from previous studies that the red giant branches (RGBs) in all seven clusters are split and the different branches have different chemical compositions. The Mg-Al anticorrelations were well explored by the APOGEE and Gaia-ESO surveys for most globular clusters, some clusters showing bimodal distributions, while others continuous distributions. Even though the structure (i.e. bimodal versus continuous) of Mg-Al can greatly vary, the Al-rich and Al-poor populations do not seem to have very different photometric properties, agreeing with theoretical calculations. There is no one-to-one correspondence between the Mg-Al anticorrelation shape (bimodal versus continuous) and the structure of the RGB seen in the HST pseudo-CMDs, with the HST photometric information usually implying more complex formation/evolution histories than the spectroscopic ones. We report on finding two second-generation horizontal branch (HB) stars in M5, and five second-generation asymptotic giant branch (AGB) stars in M92, which is the most metal-poor cluster to date in which second-generation AGB stars have been observed.

Denitrifying Bacteria from the Genus Rhodanobacter Dominate Bacterial Communities in the Highly Contaminated Subsurface of a Nuclear Legacy Waste Site

PubMed Central

Green, Stefan J.; Prakash, Om; Jasrotia, Puja; Overholt, Will A.; Cardenas, Erick; Hubbard, Daniela; Tiedje, James M.; Watson, David B.; Schadt, Christopher W.; Brooks, Scott C.

2012-01-01

The effect of long-term mixed-waste contamination, particularly uranium and nitrate, on the microbial community in the terrestrial subsurface was investigated at the field scale at the Oak Ridge Integrated Field Research Challenge (ORIFRC) site in Oak Ridge, TN. The abundance, community composition, and distribution of groundwater microorganisms were examined across the site during two seasonal sampling events. At representative locations, subsurface sediment was also examined from two boreholes, one sampled from the most heavily contaminated area of the site and another from an area with low contamination. A suite of DNA- and RNA-based molecular tools were employed for community characterization, including quantitative PCR of rRNA and nitrite reductase genes, community composition fingerprinting analysis, and high-throughput pyrotag sequencing of rRNA genes. The results demonstrate that pH is a major driver of the subsurface microbial community structure and that denitrifying bacteria from the genus Rhodanobacter (class Gammaproteobacteria) dominate at low pH. The relative abundance of bacteria from this genus was positively correlated with lower-pH conditions, and these bacteria were abundant and active in the most highly contaminated areas. Other factors, such as the concentration of nitrogen species, oxygen level, and sampling season, did not appear to strongly influence the distribution of Rhodanobacter bacteria. The results indicate that these organisms are acid-tolerant denitrifiers, well suited to the acidic, nitrate-rich subsurface conditions, and pH is confirmed as a dominant driver of bacterial community structure in this contaminated subsurface environment. PMID:22179233

Topographic Distributions of Emergent Trees in Tropical Forests of the Osa Peninsula, Costa Rica

NASA Astrophysics Data System (ADS)

Balzotti, C.; Asner, G. P.; Taylor, P.; Cole, R. J.; Osborne, B. B.; Cleveland, C. C.; Porder, S.; Townsend, A. R.

2015-12-01

Tropical rainforests are reservoirs of terrestrial carbon and biodiversity. Large and often emergent trees store disproportionately large amounts of aboveground carbon and greatly influence the structure and functioning of tropical rainforests. Despite their importance, controls on the abundance and distribution of emergent trees are largely unknown across tropical landscapes. Conventional field approaches are limited in their ability to characterize patterns in emergent trees across vast landscapes with varying environmental conditions and floristic composition. Here we used a high-resolution light detection and ranging (LiDAR) sensor, aboard the Carnegie Airborne Observatory Airborne Taxonomic Mapping System (CAO-AToMS), to examine the abundance and distribution of tall emergent tree canopies (ETC) relative to surrounding tree canopies (STC), across the Osa Peninsula, a geologically and topographically diverse region of Costa Rica. The abundance of ETC was clearly influenced by fine-scale topographic variation, with distribution patterns that held across a variety of geologic substrates. Specifically, the density of ETC was much greater on lower slopes and in valleys, compared to upper slopes and ridges. Furthermore, using the CAO high-fidelity imaging spectrometer, ETC had a different spectral signature than that of the STC. Most notably, ETC had lower foliar N than STC, which was verified with an independent field survey of canopy leaf chemistry. The underlying mechanisms to explain the topographic-dependence of ETCs and linkages to canopy N are unknown, and remain an important area of research.

The Mediterranean Plastic Soup: synthetic polymers in Mediterranean surface waters

PubMed Central

Suaria, Giuseppe; Avio, Carlo G.; Mineo, Annabella; Lattin, Gwendolyn L.; Magaldi, Marcello G.; Belmonte, Genuario; Moore, Charles J.; Regoli, Francesco; Aliani, Stefano

2016-01-01

The Mediterranean Sea has been recently proposed as one of the most impacted regions of the world with regards to microplastics, however the polymeric composition of these floating particles is still largely unknown. Here we present the results of a large-scale survey of neustonic micro- and meso-plastics floating in Mediterranean waters, providing the first extensive characterization of their chemical identity as well as detailed information on their abundance and geographical distribution. All particles >700 μm collected in our samples were identified through FT-IR analysis (n = 4050 particles), shedding for the first time light on the polymeric diversity of this emerging pollutant. Sixteen different classes of synthetic materials were identified. Low-density polymers such as polyethylene and polypropylene were the most abundant compounds, followed by polyamides, plastic-based paints, polyvinyl chloride, polystyrene and polyvinyl alcohol. Less frequent polymers included polyethylene terephthalate, polyisoprene, poly(vinyl stearate), ethylene-vinyl acetate, polyepoxide, paraffin wax and polycaprolactone, a biodegradable polyester reported for the first time floating in off-shore waters. Geographical differences in sample composition were also observed, demonstrating sub-basin scale heterogeneity in plastics distribution and likely reflecting a complex interplay between pollution sources, sinks and residence times of different polymers at sea. PMID:27876837

Species Composition and Distribution of Adult Anopheles (Diptera: Culicidae) in Panama

PubMed Central

LOAIZA, J. R.; BERMINGHAM, E.; SCOTT, M. E.; ROVIRA, J. R.; CONN, J. E.

2010-01-01

Anopheles (Diptera: Culicidae) species composition and distribution were studied using human landing catch data over a 35-yr period in Panama. Mosquitoes were collected from 77 sites during 228 field trips carried out by members of the National Malaria Eradication Service. Fourteen Anopheles species were identified. The highest average human biting rates were recorded from Anopheles (Nyssorhynchus) albimanus (Wiedemann) (9.8 bites/person/night) and Anopheles (Anopheles) punctimacula (Dyar and Knab) (6.2 bites/person/night). These two species were also the most common, present in 99.1 and 74.9%, respectively, of the sites. Anopheles (Nyssorhynchus) aquasalis (Curry) was encountered mostly in the indigenous Kuna Yala Comarca along the eastern Atlantic coast, where malaria case history and average human biting rate (9.3 bites/person/night) suggest a local role in malaria transmission. An. albimanus, An. punctimacula, and Anopheles (Anopheles) vestitipennis (Dyar and Knab) were more abundant during the rainy season (May–December), whereas An. aquasalis was more abundant in the dry season (January–April). Other vector species collected in this study were Anopheles (Kerteszia) neivai (Howard, Dyar, and Knab) and Anopheles (Anopheles) pseudopunctipennis s.l. (Theobald). High diversity of Anopheles species and six confirmed malaria vectors in endemic areas of Panama emphasize the need for more detailed studies to better understand malaria transmission dynamics. PMID:18826025

Variations in abundance, diversity and community composition of airborne fungi in swine houses across seasons

NASA Astrophysics Data System (ADS)

Kumari, Priyanka; Woo, Cheolwoon; Yamamoto, Naomichi; Choi, Hong-Lim

2016-11-01

We examined the abundance, diversity and community composition of airborne fungi in swine houses during winter and summer seasons by using quantitative PCR and Illumina HiSeq sequencing of ITS1 region. The abundance of airborne fungi varied significantly only between seasons, while fungal diversity varied significantly both within and between seasons, with both abundance and diversity peaked in winter. The fungal OTU composition was largely structured by the swine house unit and season as well as by their interactions. Of the measured microclimate variables, relative humidity, particulate matters (PMs), ammonia, and stocking density were significantly correlated with fungal OTU composition. The variation in beta diversity was higher within swine houses during summer, which indicates that the airborne fungal community composition was more heterogeneous in summer compared to winter. We also identified several potential allergen/pathogen related fungal genera in swine houses. The total relative abundance of potential allergen/pathogen related fungal genera varied between swine houses in both seasons, and showed positive correlation with PM2.5. Overall, our findings show that the abundance, diversity and composition of airborne fungi are highly variable in swine houses and to a large extent structured by indoor microclimate variables of swine houses.

Nitrogen Pollution Shifts Forest Mycorrhizal Associations at Continental Scale

NASA Astrophysics Data System (ADS)

Averill, C.; Talbot, J. M.; Dietze, M.

2016-12-01

Most trees on Earth form a symbiosis with either ectomycorrhizal or arbuscular mycorrhizal fungi. The type of association has demonstrated importance for understanding ecosystem carbon (C) and nitrogen (N) cycling. Furthermore, the effect is independent of other dominant drivers of ecosystem function: climate, mineralogy and organic matter chemistry. Given this, it becomes important to understand where different mycorrhizal associations are, what controls their distribution, and where they will be in the future. Here we analyze 3,000 forest inventory plots from the United State Forest Inventory and Analysis data set. We categorize forest basal area as ecto- or arbuscular mycorrhizal associated to generate a metric of the relative abundance of ectomycorrhizal trees (ectomycorrhizal basal area / ecto- + arbuscular mycorrhizal basal area). We model this abundance as a function of climate, soil chemical properties (pH and C:N stoichiometry), and atmospheric N deposition. We hypothesized that N pollution in the United States has affected the relative abundance of different mycorrhizal associations, and that this would be reflected in forest composition. Overall, models showed that climate, soil chemistry, and N deposition were important for predicting the current relative abundance of ecto- and arbuscular associated trees. Ectomycorrhizal trees were more abundant in cold and wet climates compared to hot and dry. Low soil pH and high soil C:N ratios were also associated with an increase in the relative abundance of ectomycorrhizal trees. Most interesting, there was a significant influence of N deposition on the relative abundance of different mycorrhizal associations. N deposition reduced the abundance of ectomycorrhizal compared to arbuscular mycorrhizal associated trees independent of climate and soil chemistry. Given the known associations between ectomycorrhizal dominance and soil C stabilization, we argue that N pollution in the United States has shifted the forest microbiome in a way that may have large implications for ecosystem C balance. Future changes in atmospheric N deposition will likely alter forest community composition and C balance via interactions with the forest microbiome.

Rare earth element compositions of core sediments from the shelf of the South Sea, Korea: Their controls and origins

NASA Astrophysics Data System (ADS)

Jung, Hoi-Soo; Lim, Dhongil; Choi, Jin-Yong; Yoo, Hae-Soo; Rho, Kyung-Chan; Lee, Hyun-Bok

2012-10-01

Rare earth elements (REEs) of bulk sediments and heavy mineral samples of core sediments from the South Sea shelf, Korea, were analyzed to determine the constraints on REE concentrations and distribution patterns as well as to investigate their potential applicability for discriminating sediment provenance. Bulk sediment REEs showed large variation in concentrations and distribution patterns primarily due to grain size and carbonate dilution effects, as well as due to an abundance of heavy minerals. In the fine sandy sediments (cores EZ02-15 and 19), in particular, heavy minerals (primarily monazite and titanite/sphene) largely influenced REE compositions. Upper continental crust-normalized REE patterns of these sand-dominated sediments are characterized by enriched light REEs (LREEs), because of inclusion of heavy minerals with very high concentrations in LREEs. Notably, such a strong LREE enrichment is also observed in Korean river sediments. So, a great care must be taken when using the REE concentrations and distribution patterns of sandy and coarse silty shelf sediments as a proxy for discriminating sediment provenance. In the fine-grained muddy sediments with low heavy mineral abundance, in contrast, REE fractionation ratios and their UCC-normalized patterns seem to be reliable proxies for assessing sediment provenance. The resultant sediment origin suggested a long lateral transportation of some fine-grained Chinese river sediments (probably the Changjiang River) to the South Sea of Korea across the shelf of the northern East China Sea.

Molecular size-dependent abundance and composition of dissolved organic matter in river, lake and sea waters.

PubMed

Xu, Huacheng; Guo, Laodong

2017-06-15

Dissolved organic matter (DOM) is ubiquitous in natural waters. The ecological role and environmental fate of DOM are highly related to the chemical composition and size distribution. To evaluate size-dependent DOM quantity and quality, water samples were collected from river, lake, and coastal marine environments and size fractionated through a series of micro- and ultra-filtrations with different membranes having different pore-sizes/cutoffs, including 0.7, 0.4, and 0.2 μm and 100, 10, 3, and 1 kDa. Abundance of dissolved organic carbon, total carbohydrates, chromophoric and fluorescent components in the filtrates decreased consistently with decreasing filter/membrane cutoffs, but with a rapid decline when the filter cutoff reached 3 kDa, showing an evident size-dependent DOM abundance and composition. About 70% of carbohydrates and 90% of humic- and protein-like components were measured in the <3 kDa fraction in freshwater samples, but these percentages were higher in the seawater sample. Spectroscopic properties of DOM, such as specific ultraviolet absorbance, spectral slope, and biological and humification indices also varied significantly with membrane cutoffs. In addition, different ultrafiltration membranes with the same manufacture-rated cutoff also gave rise to different DOM retention efficiencies and thus different colloidal abundances and size spectra. Thus, the size-dependent DOM properties were related to both sample types and membranes used. Our results here provide not only baseline data for filter pore-size selection when exploring DOM ecological and environmental roles, but also new insights into better understanding the physical definition of DOM and its size continuum in quantity and quality in aquatic environments. Copyright © 2017 Elsevier Ltd. All rights reserved.

Product ion isotopologue pattern: A tool to improve the reliability of elemental composition elucidations of unknown compounds in complex matrices.

PubMed

Kaufmann, A; Walker, S; Mol, G

2016-04-15

Elucidation of the elemental compositions of unknown compounds (e.g., in metabolomics) generally relies on the availability of accurate masses and isotopic ratios. This study focuses on the information provided by the abundance ratio within a product ion pair (monoisotopic versus the first isotopic peak) when isolating and fragmenting the first isotopic ion (first isotopic mass spectrum) of the precursor. This process relies on the capability of the quadrupole within the Q Orbitrap instrument to isolate a very narrow mass window. Selecting only the first isotopic peak (first isotopic mass spectrum) leads to the observation of a unique product ion pair. The lighter ion within such an isotopologue pair is monoisotopic, while the heavier ion contains a single carbon isotope. The observed abundance ratio is governed by the percentage of carbon atoms lost during the fragmentation and can be described by a hypergeometric distribution. The observed carbon isotopologue abundance ratio (product ion isotopologue pattern) gives reliable information regarding the percentage of carbon atoms lost in the fragmentation process. It therefore facilitates the elucidation of the involved precursor and product ions. Unlike conventional isotopic abundances, the product ion isotopologue pattern is hardly affected by isobaric interferences. Furthermore, the appearance of these pairs greatly aids in cleaning up a 'matrix-contaminated' product ion spectrum. The product ion isotopologue pattern is a valuable tool for structural elucidation. It increases confidence in results and permits structural elucidations for heavier ions. This tool is also very useful in elucidating the elemental composition of product ions. Such information is highly valued in the field of multi-residue analysis, where the accurate mass of product ions is required for the confirmation process. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

Spatial variation in abundance, size and orientation of juvenile corals related to the biomass of parrotfishes on the Great Barrier Reef, Australia.

PubMed

Trapon, Melanie L; Pratchett, Morgan S; Hoey, Andrew S

2013-01-01

For species with complex life histories such as scleractinian corals, processes occurring early in life can greatly influence the number of individuals entering the adult population. A plethora of studies have examined settlement patterns of coral larvae, mostly on artificial substrata, and the composition of adult corals across multiple spatial and temporal scales. However, relatively few studies have examined the spatial distribution of small (≤50 mm diameter) sexually immature corals on natural reef substrata. We, therefore, quantified the variation in the abundance, composition and size of juvenile corals (≤50 mm diameter) among 27 sites, nine reefs, and three latitudes spanning over 1000 km on Australia's Great Barrier Reef. Overall, 2801 juveniles were recorded with a mean density of 6.9 (±0.3 SE) ind.m(-2), with Acropora, Pocillopora, and Porites accounting for 84.1% of all juvenile corals surveyed. Size-class structure, orientation on the substrate and taxonomic composition of juvenile corals varied significantly among latitudinal sectors. The abundance of juvenile corals varied both within (6-13 ind.m(-2)) and among reefs (2.8-11.1 ind.m(-2)) but was fairly similar among latitudes (6.1-8.2 ind.m(-2)), despite marked latitudinal variation in larval supply and settlement rates previously found at this scale. Furthermore, the density of juvenile corals was negatively correlated with the biomass of scraping and excavating parrotfishes across all sites, revealing a potentially important role of parrotfishes in determining distribution patterns of juvenile corals on the Great Barrier Reef. While numerous studies have advocated the importance of parrotfishes for clearing space on the substrate to facilitate coral settlement, our results suggest that at high biomass they may have a detrimental effect on juvenile coral assemblages. There is, however, a clear need to directly quantify rates of mortality and growth of juvenile corals to understand the relative importance of these mechanisms in shaping juvenile, and consequently adult, coral assemblages.

Microbial community stratification linked to utilization of carbohydrates and phosphorus limitation in a boreal peatland at Marcell Experimental Forest, Minnesota, USA.

PubMed

Lin, Xueju; Tfaily, Malak M; Steinweg, J Megan; Chanton, Patrick; Esson, Kaitlin; Yang, Zamin K; Chanton, Jeffrey P; Cooper, William; Schadt, Christopher W; Kostka, Joel E

2014-06-01

This study investigated the abundance, distribution, and composition of microbial communities at the watershed scale in a boreal peatland within the Marcell Experimental Forest (MEF), Minnesota, USA. Through a close coupling of next-generation sequencing, biogeochemistry, and advanced analytical chemistry, a biogeochemical hot spot was revealed in the mesotelm (30- to 50-cm depth) as a pronounced shift in microbial community composition in parallel with elevated peat decomposition. The relative abundance of Acidobacteria and the Syntrophobacteraceae, including known hydrocarbon-utilizing genera, was positively correlated with carbohydrate and organic acid content, showing a maximum in the mesotelm. The abundance of Archaea (primarily crenarchaeal groups 1.1c and 1.3) increased with depth, reaching up to 60% of total small-subunit (SSU) rRNA gene sequences in the deep peat below the 75-cm depth. Stable isotope geochemistry and potential rates of methane production paralleled vertical changes in methanogen community composition to indicate a predominance of acetoclastic methanogenesis mediated by the Methanosarcinales in the mesotelm, while hydrogen-utilizing methanogens predominated in the deeper catotelm. RNA-derived pyrosequence libraries corroborated DNA sequence data to indicate that the above-mentioned microbial groups are metabolically active in the mid-depth zone. Fungi showed a maximum in rRNA gene abundance above the 30-cm depth, which comprised only an average of 0.1% of total bacterial and archaeal rRNA gene abundance, indicating prokaryotic dominance. Ratios of C to P enzyme activities approached 0.5 at the acrotelm and catotelm, indicating phosphorus limitation. In contrast, P limitation pressure appeared to be relieved in the mesotelm, likely due to P solubilization by microbial production of organic acids and C-P lyases. Based on path analysis and the modeling of community spatial turnover, we hypothesize that P limitation outweighs N limitation at MEF, and microbial communities are structured by the dominant shrub, Chamaedaphne calyculata, which may act as a carbon source for major consumers in the peatland.

Apollo 16 returned lunar samples - Lithophile trace-element abundances

NASA Technical Reports Server (NTRS)

Philpotts, J. A.; Schuhmann, S.; Kouns, C. W.; Lum, R. K. L.; Bickel, A. L.; Schnetzler, C. C.

1973-01-01

Lithium, K, Rb, Sr, Ba, rare-earth, Zr, and Hf abundances have been determined by mass-spectrometric isotope-dilution for Apollo 16 soils, anorthosite 61016, and 'basalt' 68415 whole-rock and separated pyroxene and plagioclase. Our sample of 61016 is similar to some other lunar anorthosites in lithophile trace-element concentrations but at a slightly lower level. It was probably accumulated from a little differentiated basalt. Basalt 68415 might be a homogeneous mixture of KREEP and anorthosite material; it appears to have crystallized under conditions as reducing as those holding for mare-basalts. The soil fines cover only a limited compositional range. No obvious chemical differences were noted between the Descartes and Cayley formations. Most of the compositional variation of the soils can be accounted for in terms of the addition of plagioclase. The existence of very high alumina basalt as an independent magma-type appears debatable in view of its KREEP-like lithophile trace-element relative concentrations and the observed lunar radioactivity distribution.

Physical parameters of lambda Bootis stars

NASA Astrophysics Data System (ADS)

Solano, E.; Paunzen, E.; Pintado, O. I.; Córdoba; Varela, J.

2001-08-01

This is the first of two papers whose main goal is to update and improve the information available on the physical properties of the lambda Bootis stars. The determination of the stellar parameters is of fundamental importance to shed light into the different theories proposed to explain the lambda Bootis phenomenon. With this aim, projected rotational velocities, effective temperatures, surface gravities and chemical abundances of a sample of suspected lambda Bootis stars have been calculated. Five objects showing composite spectra typical of binary systems were found in our analysis. The abundance distribution of the program stars does not resemble the chemical composition of the class prototype, lambda Boo, which poses some concerns regarding the idea of a well-defined, chemically homogeneous group of stars. A possible relation between rotational velocities and the lambda Bootis phenomenon has been found. This result would be in agreement with the accretion scenario proposed by Turcotte & Charbonneau (\\cite{Turcotte93}). Figure 3 is only available in electronic form at http://www.edpsciences.org

Cloud chemistry on Jupiter

NASA Technical Reports Server (NTRS)

Carlson, Barbara E.; Prather, Michael J.; Rossow, William B.

1987-01-01

Chemical equilibrium models used currently to interpret observations of Jupiter are reexamined using new data defining thermal profiles, which are substantially different from those used in the previous models. A model is developed for the chemical reactions controlling the composition of the upper troposphere on Jupiter, specifically the cloud-forming region from 10 bar to 0.1 bar, which includes, for the first time, the effects of aqueous chemistry on the composition and the vertical distribution of many measurable species in the atmosphere, identifying the factors influencing their abundances above the H2O cloud. The thermodynamic data for potential condensates on Jupiter, i.e., NH3(s), NH4SH(s), (NH4)2S(s), and H2S(s), are reexamined, recognizing the lack of data on sulfides for the temperature range of interest on Jupiter. Vertical profiles of mixing ratios for CO2, H2S, NH3, and H2, obtained for several assumed bulk abundances with respect to solar, are presented.

The Compositional Evolution of C/2012 S1 (ISON) from Ground-Based High-Resolution Infrared Spectroscopy as Part of a Worldwide Observing Campaign

NASA Technical Reports Server (NTRS)

Russo, N. Dello; Vervack, R. J., Jr.; Kawakita, H.; Cochran, A.; McKay, A. J.; Harris, W. M.; Weaver, H.A.; Lisse, C. M.; DiSanti, M. A.; Kobayashi, H.

2015-01-01

Volatile production rates, relative abundances, rotational temperatures, and spatial distributions in the coma were measured in C/2012 S1 (ISON) using long-slit high-dispersion (lambda/delta lambda approximately 2.5 times 10 (sup 4)) infrared spectroscopy as part of a worldwide observing campaign. Spectra were obtained on Universal Time 2013 October 26 and 28 with NIRSPEC (Near Infrared Spectrometer) at the W.M. Keck Observatory, and Universal Time 2013 November 19 and 20 with CSHELL (Cryogenic Echelle Spectrograph) at the NASA IRTF (Infrared Telescope Facility). H2O was detected on all dates, with production rates increasing markedly from (8.7 plus or minus 1.5) times 10 (sup 27) molecules per second on October 26 (Heliocentric Distance = 1.12 Astronomical Units) to (3.7 plus or minus 0.4) times 10 (sup 29) molecules per second on November 20 (Heliocentric Distance = 0.43 Astronomical Units). Short-term variability of H2O production is also seen as observations on November 19 show an increase in H2O production rate of nearly a factor of two over a period of about 6 hours. C2H6, CH3OH and CH4 abundances in ISON (International Scientific Optical Network) are slightly depleted relative to H2O when compared to mean values for comets measured at infrared wavelengths. On the November dates, C2H2, HCN and OCS abundances relative to H2O appear to be within the range of mean values, whereas H2CO and NH3 were significantly enhanced. There is evidence that the abundances with respect to H2O increased for some species but not others between October 28 (Heliocentric Distance = 1.07 Astronomical Units) and November 19 (Heliocentric Distance = 0.46 Astronomical Units). The high mixing ratios of H2CO to CH3OH and C2H2 to C2H6 on November 19, and changes in the mixing ratios of some species with respect to H2O between October 28 to November 19, indicates compositional changes that may be the result of a transition from sampling radiation-processed outer layers in this dynamically new comet to sampling more pristine natal material as the outer processed layer was increasingly eroded and the thermal wave propagated into the nucleus as the comet approached perihelion for the first time. On November 19 and 20, the spatial distribution for dust appears asymmetric and enhanced in the antisolar direction, whereas spatial distributions for volatiles (excepting CN) appear symmetric with their peaks slightly offset in the sunward direction compared to the dust. Spatial distributions for H2O, HCN, C2H6, C2H2, and H2CO on November 19 show no definitive evidence for significant contributions from extended sources; however, broader spatial distributions for NH3 and OCS may be consistent with extended sources for these species. Abundances of HCN and C2H2 on November 19 and 20 are insufficient to account for reported abundances of CN and C2 in ISON near this time. Differences in HCN and CN spatial distributions are also consistent with HCN as only a minor source of CN in ISON on November 19 as the spatial distribution of CN in the coma suggests a dominant distributed source that is correlated with dust and not volatile release. The spatial distributions for NH3 and NH2 are similar, suggesting that NH3 is the primary source of NH2 with no evidence of a significant dust source of NH2; however, the higher production rates derived for NH3 compared to NH2 on November 19 and 20 remain unexplained. This suggests a more complete analysis that treats NH2 as a distributed source and accounts for its emission mechanism is needed for future work.

Characteristics of hydrocarbons in sediment core samples from the northern Okinawa Trough.

PubMed

Huang, Xin; Chen, Shuai; Zeng, Zhigang; Pu, Xiaoqiang; Hou, Qinghua

2017-02-15

Sediment core samples from the northern Okinawa Trough (OT) were analyzed to determine abundances and distributions of hydrocarbons by gas chromatography-mass spectrometer (GC-MS). The results show that the n-alkanes in this sediment core conform to a bimodal distribution, and exhibit an odd-to-even predominance of high molecular weights compared to an even-to-odd predominance in low molecular weight n-alkanes with maxima at C 16 and C 18 . The concentrations of bitumen, alkanes and polyaromatic hydrocarbons (PAHs) were higher in samples S10-07 than all others. Three maturity parameters as well as the ratios between parent phenanthrenes (Ps) and methylphenanthrenes (MPs) in samples S10-07 and S10-17 were higher. The distribution and composition of hydrocarbons in sample S10-07 suggest that one, or several, undetected hydrothermal fields may be present in the region of this sediment core. Results also suggest that volcanism may be the main reason for the observed distribution and composition of hydrocarbons in S10-17 sample. Copyright © 2016 Elsevier Ltd. All rights reserved.

Patterns of rare and abundant marine microbial eukaryotes.

PubMed

Logares, Ramiro; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Dolan, John R; Dunthorn, Micah; Edvardsen, Bente; Gobet, Angélique; Kooistra, Wiebe H C F; Mahé, Frédéric; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C; Romac, Sarah; Shalchian-Tabrizi, Kamran; Simon, Nathalie; Stoeck, Thorsten; Santini, Sébastien; Siano, Raffaele; Wincker, Patrick; Zingone, Adriana; Richards, Thomas A; de Vargas, Colomban; Massana, Ramon

2014-04-14

Biological communities are normally composed of a few abundant and many rare species. This pattern is particularly prominent in microbial communities, in which most constituent taxa are usually extremely rare. Although abundant and rare subcommunities may present intrinsic characteristics that could be crucial for understanding community dynamics and ecosystem functioning, microbiologists normally do not differentiate between them. Here, we investigate abundant and rare subcommunities of marine microbial eukaryotes, a crucial group of organisms that remains among the least-explored biodiversity components of the biosphere. We surveyed surface waters of six separate coastal locations in Europe, independently considering the picoplankton, nanoplankton, and microplankton/mesoplankton organismal size fractions. Deep Illumina sequencing of the 18S rRNA indicated that the abundant regional community was mostly structured by organismal size fraction, whereas the rare regional community was mainly structured by geographic origin. However, some abundant and rare taxa presented similar biogeography, pointing to spatiotemporal structure in the rare microeukaryote biosphere. Abundant and rare subcommunities presented regular proportions across samples, indicating similar species-abundance distributions despite taxonomic compositional variation. Several taxa were abundant in one location and rare in other locations, suggesting large oscillations in abundance. The substantial amount of metabolically active lineages found in the rare biosphere suggests that this subcommunity constitutes a diversity reservoir that can respond rapidly to environmental change. We propose that marine planktonic microeukaryote assemblages incorporate dynamic and metabolically active abundant and rare subcommunities, with contrasting structuring patterns but fairly regular proportions, across space and time. Copyright © 2014 Elsevier Ltd. All rights reserved.

Disentangling Seasonality and Mean Annual Precipitation in the Indo-Pacific Warm Pool: Insights from Coupled Plant Wax C and H Isotope Measurements

NASA Astrophysics Data System (ADS)

Galy, V.; Oppo, D.; Dubois, N.; Arbuszewski, J. A.; Mohtadi, M.; Schefuss, E.; Rosenthal, Y.; Linsley, B. K.

2016-12-01

There is ample evidence suggesting that rainfall distribution across the Indo-Pacific Warm Pool (IPWP) - a key component of the global climate system - has substantially varied over the last deglaciation. Yet, the precise nature of these hydroclimate changes remains to be elucidated. In particular, the relative importance of variations in precipitation seasonality versus annual precipitation amount is essentially unknown. Here we use a set of surface sediments from the IPWP covering a wide range of modern hydroclimate conditions to evaluate how plant wax stable isotope composition records rainfall distribution in the area. We focus on long chain fatty acids, which are exclusively produced by vascular plants living on nearby land and delivered to the ocean by rivers. We relate the C (δ13C) and H (δD) isotope composition of long chain fatty acids preserved in surface sediments to modern precipitation distribution and stable isotope composition in their respective source area. We show that: 1) δ13C values reflect vegetation distribution (in particular the relative abundance of C3 and C4 plants) and are primarily recording precipitation seasonality (Dubois et al., 2014) and, 2) once corrected for plant fractionation effects, δD values reflect the amount-weighted average stable isotope composition of precipitation and are primarily recording annual precipitation amounts. We propose that combining the C and H isotope composition of long chain fatty acids thus allows independent reconstructions of precipitation seasonality and annual amounts in the IPWP. The practical implications for reconstructing past hydroclimate in the IPWP will be discussed.

Nearshore Fish Distributions in an Alaskan Estuary in Relation to Stratification, Temperature and Salinity

NASA Astrophysics Data System (ADS)

Abookire, A. A.; Piatt, J. F.; Robards, M. D.

2000-07-01

Fish were sampled with beach seines and small-meshed beam trawls in nearshore (<1 km) and shallow (<25 m) habitats on the southern coast of Kachemak Bay, Cook Inlet, Alaska, from June to August, 1996-1998. Fish distributions among habitats were analysed for species composition, catch-per-unit-effort (CPUE) and frequency of occurrence. Two oceanographically distinct areas of Kachemak Bay were sampled and compared: the Outer Bay and the Inner Bay. Outer Kachemak Bay is exposed and receives oceanic, upwelled water from the Gulf of Alaska, whereas the Inner Bay is more estuarine. Thermohaline properties of bottom water in the Outer and Inner Bay were essentially the same, whereas the Inner Bay water-column was stratified with warmer, less saline waters near the surface. Distribution and abundance of pelagic schooling fish corresponded with area differences in stratification, temperature and salinity. The Inner Bay supported more species and higher densities of schooling and demersal fish than the Outer Bay. Schooling fish communities sampled by beach seine differed between the Outer and Inner Bays. Juvenile and adult Pacific sand lance ( Ammodytes hexapterus), Pacific herring ( Clupea harengus pallasi), osmerids (Osmeridae) and sculpins (Cottidae) were all more abundant in the Inner Bay. Gadids (Gadidae) were the only schooling fish taxa more abundant in the Outer Bay. Thermohaline characteristics of bottom water were similar throughout Kachemak Bay. Correspondingly, bottom fish communities were similar in all areas. Relative abundances (CPUE) were not significantly different between areas for any of the five demersal fish groups: flatfishes (Pleuronectidae), ronquils (Bathymasteridae), sculpins (Cottidae), gadids (Gadidae) and pricklebacks (Stichaeidae).

Nearshore fish distributions in an Alaskan estuary in relation to stratification, temperature, and salinity

USGS Publications Warehouse

Abookire, Alisa A.; Piatt, John F.; Robards, Martin D.

2000-01-01

Fish were sampled with beach seines and small-meshed beam trawls in nearshore ( < 1 km) and shallow ( < 25 m) habitats on the southern coast of Kachemak Bay, Cook Inlet, Alaska, from June to August, 1996-1998. Fish distributions among habitats were analysed for species composition, catch-per-unit-effort (CPUE) and frequency of occurrence. Two oceanographically distinct areas of Kachemak Bay were sampled and compared: the Outer Bay and the Inner Bay. Outer Kachemak Bay is exposed and receives oceanic, upwelled water from the Gulf of Alaska, whereas the Inner Bay is more estuarine. Thermohaline properties of bottom water in the Outer and Inner Bay were essentially the same, whereas the Inner Bay water-column was stratified with warmer, less saline waters near the surface. Distribution and abundance of pelagic schooling fish corresponded with area differences in stratification, temperature and salinity. The Inner Bay supported more species and higher densities of schooling and demersal fish than the Outer Bay. Schooling fish communities sampled by beach seine differed between the Outer and Inner Bays. Juvenile and adult Pacific sand lance (Ammodytes hexapterus), Pacific herring (Clupea harengus pallasi), osmerids (Osmeridae) and sculpins (Cottidae) were all more abundant in the Inner Bay. Gadids (Gadidae) were the only schooling fish taxa more abundant in the Outer Bay. Thermohaline characteristics of bottom water were similar throughout Kachemak Bay. Correspondingly, bottom fish communities were similar in all areas. Relative abundances (CPUE) were not significantly different between areas for any of the five demersal fish groups: flatfishes (Pleuronectidae), ronquils (Bathymasteridae), sculpins (Cottidae), gadids (Gadidae) and pricklebacks (Stichaeidae).

Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning

PubMed Central

Wessén, Ella; Söderström, Mats; Stenberg, Maria; Bru, David; Hellman, Maria; Welsh, Allana; Thomsen, Frida; Klemedtson, Leif; Philippot, Laurent; Hallin, Sara

2011-01-01

Characterization of spatial patterns of functional microbial communities could facilitate the understanding of the relationships between the ecology of microbial communities, the biogeochemical processes they perform and the corresponding ecosystem functions. Because of the important role the ammonia-oxidizing bacteria (AOB) and archaea (AOA) have in nitrogen cycling and nitrate leaching, we explored the spatial distribution of their activity, abundance and community composition across a 44-ha large farm divided into an organic and an integrated farming system. The spatial patterns were mapped by geostatistical modeling and correlations to soil properties and ecosystem functioning in terms of nitrate leaching were determined. All measured community components for both AOB and AOA exhibited spatial patterns at the hectare scale. The patchy patterns of community structures did not reflect the farming systems, but the AOB community was weakly related to differences in soil pH and moisture, whereas the AOA community to differences in soil pH and clay content. Soil properties related differently to the size of the communities, with soil organic carbon and total nitrogen correlating positively to AOB abundance, while clay content and pH showed a negative correlation to AOA abundance. Contrasting spatial patterns were observed for the abundance distributions of the two groups indicating that the AOB and AOA may occupy different niches in agro-ecosystems. In addition, the two communities correlated differently to community and ecosystem functions. Our results suggest that the AOA, not the AOB, were contributing to nitrate leaching at the site by providing substrate for the nitrite oxidizers. PMID:21228891

Distribution of tabanids (Diptera: Tabanidae) along a two-sided altitudinal transect.

PubMed

Hackenberger, Branimir K; Jarić, Davorka; Krcmar, Stjepan

2009-12-01

The pattern of horse fly (Diptera: Tabanidae) distribution and correlations among biodiversity, abundance, abiotic factors, and altitude were determined along a two-sided altitudinal transect. The sampling was carried out on five 3-d periods during tabanid seasonal activity. Linen canopy traps with 1-octen-3-ol as an attractant were used at 20 sampling sites along the transect. The results showed that the qualitative composition of tabanid species can be distinguished by altitude and, especially, between southeastern and northwestern mountain slopes. The peaks of horse fly species richness and abundance were indicated at middle elevations of both slopes, where horse fly distributional groups were overlapping and most rare and infrequent species were sampled. All expected species were sampled according to species accumulation curve. The canonical correlation analysis separated species and sampling sites into three clusters; two were positively correlated with the temperature and the wind but differed in sensitivity toward them, and the third cluster was correlated with the humidity. The horse fly distribution was nonhomogenous, and the distributional patterns were only partially determined by altitude and vegetation. The determining environmental variables were different for each slope: temperature and wind for the southern slope (Mediterranean climatic zone) and humidity for the northern slope (continental climatic zone).

Geosynthesis of organic compounds: I. Alkylphenols

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ioppolo-Armanios, M.; Alexander, R.; Kagi, R.I.

1995-07-01

Methylation, isopropylation, and sec-butylation are proposed as geosynthetic processes to account for the alkylphenol compositions of crude oils with phenol distributions dominated by ortho and para substituted compounds. Phenol distributions in eleven crude oils and four kerogen pyrolysates were analysed using GC-MS (gas chromatography-mass spectrometry). Ten of the crude oils show high relative abundances of ortho and para substituted phenol isomers and some were also enriched in C{sub 3}-C{sub 5} alkylphenols compared to the kerogen pyrolysates. Because the distributions of products obtained from the laboratory alkylation of cresols closely resemble those of phenols in these crude oils, we propose thatmore » similar alkylation processes occur in source rocks. Alkylation ratios reflecting the degree of methylation, isopropylation, and sec-butylation, which were based on the relative abundance of the dominant alkylation products compared to their likely precursor ortho-cresol, indicate that high levels of methylation occurred in crude oils over a wide range of maturities, whereas high levels of isopropylation and sec-butylation were observed only in mature samples. Dissolution of the phenols in crude oils by water contact was discounted as an explanation for the observed phenol distributions based on the relative distribution coefficients of phenols between a hydrocarbon phase and water.« less

Centralized Drinking Water Treatment Operations Shape Bacterial and Fungal Community Structure.

PubMed

Ma, Xiao; Vikram, Amit; Casson, Leonard; Bibby, Kyle

2017-07-05

Drinking water microbial communities impact opportunistic pathogen colonization and corrosion of water distribution systems, and centralized drinking water treatment represents a potential control for microbial community structure in finished drinking water. In this article, we examine bacterial and fungal abundance and diversity, as well as the microbial community taxonomic structure following each unit operation in a conventional surface water treatment plant. Treatment operations drove the microbial composition more strongly than sampling time. Both bacterial and fungal abundance and diversity decreased following sedimentation and filtration; however, only bacterial abundance and diversity was significantly impacted by free chlorine disinfection. Similarly, each treatment step was found to shift bacterial and fungal community beta-diversity, with the exception of disinfection on the fungal community structure. We observed the enrichment of bacterial and fungal taxa commonly found in drinking water distribution systems through the treatment process, for example, Sphingomonas following filtration and Leptospirillium and Penicillium following disinfection. Study results suggest that centralized drinking water treatment processes shape the final drinking water microbial community via selection of community members and that the bacterial community is primarily driven by disinfection while the eukaryotic community is primarily controlled by physical treatment processes.

Vertical stratification of beetles (Coleoptera) and flies (Diptera) in temperate forest canopies.

PubMed

Maguire, Dorothy Y; Robert, Katleen; Brochu, Kristen; Larrivée, Maxim; Buddle, Christopher M; Wheeler, Terry A

2014-02-01

Forest canopies support high arthropod biodiversity, but in temperate canopies, little is known about the spatial distribution of these arthropods. This is an important first step toward understanding ecological roles of insects in temperate canopies. The objective of this study was to assess differences in the species composition of two dominant and diverse taxa (Diptera and Coleoptera) along a vertical gradient in temperate deciduous forest canopies. Five sugar maple trees from each of three deciduous forest sites in southern Quebec were sampled using a combination of window and trunk traps placed in three vertical strata (understory, mid-canopy, and upper-canopy) for three sampling periods throughout the summer. Coleoptera species richness and abundance did not differ between canopy heights, but more specimens and species of Diptera were collected in the upper-canopy. Community composition of Coleoptera and Diptera varied significantly by trap height. Window traps collected more specimens and species of Coleoptera than trunk traps, although both trap types should be used to maximize representation of the entire Coleoptera community. There were no differences in abundance, diversity, or composition of Diptera collected between trap types. Our data confirm the relevance of sampling all strata in a forest when studying canopy arthropod biodiversity.

Distribution and abundance of decapod crustacean larvae in the southeastern Bering Sea with emphasis on commercial species. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Armstrong, D.A.; Incze, L.S.; Wencker, D.L.

1981-01-01

Contents include: Distribution and abundance of king crab larvae, Paralithodes camtschatica and P. platypus in the southeast Bering Sea; Distribution and abundance of the larvae of tanner crabs in the southeastern Bering Sea; Distribution and abundance of other brachyuran larvae in the southeastern Bering Sea with emphasis on Erimacrus isenbeckii; Distribution and abundance of shrimp larvae in the southeastern Bering Sea with emphasis on pandalid species; Distribution and abundance of hermit crabs (Paguridae) in the southeasternBering Sea; Possible oil impacts on decapod larbae in the southeastern Bering Sea with emphesis on the St. George Basin.

Phytoplankton community and environmental correlates in a coastal upwelling zone along western Taiwan Strait

NASA Astrophysics Data System (ADS)

Wang, Yu; Kang, Jian-hua; Ye, You-yin; Lin, Geng-ming; Yang, Qing-liang; Lin, Mao

2016-02-01

Upwelling system in western Taiwan Strait is important for facilitating the fishery production. This study investigated hydro-chemical properties, phytoplankton biomass, phytoplankton species composition, three-dimensional (horizontal, vertical and transect) distribution of phytoplankton abundance, as well as phytoplankton annual variation and the correlation of phytoplankton community with the upwelling of underlying current and nutrients according to samples of Fujian-Guangdong coastal upwelling zone in western Taiwan Strait from August 27 to September 8, 2009. The results manifest that the nutrient-rich cold and high salinity current on the continental shelf of South China Sea upwells to the Fujian-Guangdong coastal waters through Taiwan Bank and the surging strength to surface is weak while strong at 30-m layer. The thermohaline center of coastal upwelling shifts to the east of Dongshan Island and expanded to offshore waters in comparison with previous records. A total of 137 phytoplankton species belonging to 59 genera in 4 phyla are identified excluding the unidentified species. Diatom is the first major group and followed by dinoflagellate. Cyanobacteria mainly composed by three Trichodesmium species account for a certain proportions, while Chrysophyta are only found in offshore waters. The dominant species include Thalassionema nitzschioides, Pseudo-nitzschia pungens, Thalassionema frauenfeldii, Pseudo-nitzschia delicatissima, Rhizosolenia styliformis, Chaetoceros curvisetus, Diplopsalis lenticula and Trichodesmium thiebautii. Phytoplankton community mainly consists of eurythermal and eurytopic species, followed by warm-water species, tropic high-salinity species and oceanic eurythermic species in order. Phytoplankton abundance ranges from 1.00 × 102 ind./L ~ 437.22 × 102 ind./L with an average of 47.36 × 102 ind./L. For vertical distribution, maximum abundance is found at 30 m-depth and the surface comes second. Besides, the abundance below 30 m decreases with increasing water depth. The horizontal and transect distribution of phytoplankton abundance are both displayed in patchy size, and the peak area is the offshore waters from the east of Dongshan Island to the south of Zhangpu which is basically coincident with the thermohaline center of the upwelling, but the distribution range of phytoplankton high abundance is expanded out of the upwelling center. Phytoplankton abundances on 3 transects in offshore waters from the east of Dongshan Island to the south of Zhangpu are higher than that of nearshore waters and the other 5 transects. Moreover, the underlying current is accompanied by shade flora so as to offer a certain evidence for the presence of upwelling. Phytoplankton abundance at 30 m-depth and bottom both present low significant positive correlation with phosphate, while there are not significant correlations between the content of inorganic nitrogen and phytoplankton abundance in all water layers. The intensity and range of Fujian-guangdong coastal upwelling has a regulating effect on the species succession, abundance distribution and the location of phytoplankton peak area.

Distribution of living radiolarians and its response on the environments in spring from the section South China Sea

NASA Astrophysics Data System (ADS)

Zhang, L.; Hu, W.; Chen, M.; Zeng, L.; Xiang, R.; Zhou, W.

2013-12-01

The composition and spatial (horizontal and vertical) distribution of living radiolarians in spring was firstly studied in the section (18°N and 113°E) South China Sea. Vertical plankton tows were collected at depth-intervals from 0 to 300 m in spring using a closing-type net with 62 um mesh size. And we distinguished the living specimens by staining with Rose Bengal. It dominated by tropical-subtropical warm species in spring from the studied areas. The abundance of nassellarians was the almost same as that of spumellarians in the upper-surface waters (0-25m). In the below-surface waters (25-50m), nassellarian abundance was the almost twice that of spumellarians. And the abundances generally decreased with depth (more than 50m), but nasselarian abundance reduced more quickly. The results showed that the horizontal and vertical distribution patterns of living radiolarians were closely related to the mesoscale eddies. The horizontal distributions of radiolarian abundance were uneven and pachy, which may be related to the complicated mecoscale eddies during the sampling period. That is, there were comparatively high abundances in the upper-surface waters where had the cold eddies development. But in the cold eddies of Meigong River mouth, radiolarian abundance was low due to the large input of fresh water, suggesting that low salinity had more important influence than the nutrient on the radiolarian development and reproduction. Vertically, the highest abundances occurred at the mixed layer in the cold eddies, and gradually decreased with depth. However, in the warm eddies, the maximum abundances were in the thermocline layers, where had an abundant supply of nutrients for radiolarians. This study showed that Didymocyrtis tetrathalamus tetrathalamus mostly occurred at the mixed layer, which should be closely related to the cold eddies and rich nutrition and be limited by the fresh water. Based on the distribution of Didymocyrtis tetrathalamus tetrathalamus, we concluded that the influence of west Pacific waters was obviously weak on the northwestern Luzon Island during the sampling period. As a tropical surface warm species, Tetrapyle octacantha was also found to be indicator of tropical upwelling eutrophication water. Acanthodesmia vinculata was mainly living in the mixed layer, and had a good response to the cold eddies far away the continental shelf. Besides, we also concluded that Siphonosphaera polysiphonia should be tropical surface warm species, having a gregarious life, which had a closely related to the warm eddies. Interestingly, the typical deep-dwellers (Cornutella profunda and Cyrtopera laguncula) occurred in the different depth intervals, even in the upper-surface waters, which suggested that the temperature might not be the mostly one of factors to control their living-depth. This study was funded by the following research programs: the National Natural Science Foundation of China (Nos. 41276051, 91228207, 40906030).

Cloud Condensation in Titan's Lower Stratosphere

NASA Technical Reports Server (NTRS)

Romani, Paul N.; Anderson, Carrie M.

2011-01-01

A 1-D condensation model is developed for the purpose of reproducing ice clouds in Titan's lower stratosphere observed by the Composite Infrared Spectrometer (CIRS) onboard Cassini. Hydrogen cyanide (HCN), cyanoacetylene (HC3N), and ethane (C2H6) vapors are treated as chemically inert gas species that flow from an upper boundary at 500 km to a condensation sink near Titan's tropopause (-45 km). Gas vertical profiles are determined from eddy mixing and a downward flux at the upper boundary. The condensation sink is based upon diffusive growth of the cloud particles and is proportional to the degree of supersaturation in the cloud formation regIOn. Observations of the vapor phase abundances above the condensation levels and the locations and properties of the ice clouds provide constraints on the free parameters in the model. Vapor phase abundances are determined from CIRS mid-IR observations, whereas cloud particle sizes, altitudes, and latitudinal distributions are derived from analyses of CIRS far-IR observations of Titan. Specific cloud constraints include: I) mean particle radii of2-3 J.lm inferred from the V6 506 cm- band of HC3N, 2) latitudinal abundance distributions of condensed nitriles, inferred from a composite emission feature that peaks at 160/cm , and 3) a possible hydrocarbon cloud layer at high latitudes, located near an altitude of 60 km, which peaks between 60 and 80 cm l . Nitrile abundances appear to diminish substantially at high northern latitudes over the time period 2005 to 2010 (northern mid winter to early spring). Use of multiple gas species provides a consistency check on the eddy mixing coefficient profile. The flux at the upper boundary is the net column chemical production from the upper atmosphere and provides a constraint on chemical pathways leading to the production of these compounds. Comparison of the differing lifetimes, vapor phase transport, vapor phase loss rate, and particle sedimentation, sheds light on temporal stability of the clouds.

Impacts of Intensive Logging on the Trophic Organisation of Ant Communities in a Biodiversity Hotspot

PubMed Central

Woodcock, Paul; Edwards, David P.; Newton, Rob J.; Vun Khen, Chey; Bottrell, Simon H.; Hamer, Keith C.

2013-01-01

Trophic organisation defines the flow of energy through ecosystems and is a key component of community structure. Widespread and intensifying anthropogenic disturbance threatens to disrupt trophic organisation by altering species composition and relative abundances and by driving shifts in the trophic ecology of species that persist in disturbed ecosystems. We examined how intensive disturbance caused by selective logging affects trophic organisation in the biodiversity hotspot of Sabah, Borneo. Using stable nitrogen isotopes, we quantified the positions in the food web of 159 leaf-litter ant species in unlogged and logged rainforest and tested four predictions: (i) there is a negative relationship between the trophic position of a species in unlogged forest and its change in abundance following logging, (ii) the trophic positions of species are altered by logging, (iii) disturbance alters the frequency distribution of trophic positions within the ant assemblage, and (iv) disturbance reduces food chain length. We found that ant abundance was 30% lower in logged forest than in unlogged forest but changes in abundance of individual species were not related to trophic position, providing no support for prediction (i). However, trophic positions of individual species were significantly higher in logged forest, supporting prediction (ii). Consequently, the frequency distribution of trophic positions differed significantly between unlogged and logged forest, supporting prediction (iii), and food chains were 0.2 trophic levels longer in logged forest, the opposite of prediction (iv). Our results demonstrate that disturbance can alter trophic organisation even without trophically-biased changes in community composition. Nonetheless, the absence of any reduction in food chain length in logged forest suggests that species-rich arthropod food webs do not experience trophic downgrading or a related collapse in trophic organisation despite the disturbance caused by logging. These food webs appear able to bend without breaking in the face of some forms of anthropogenic disturbance. PMID:23593302

Impacts of intensive logging on the trophic organisation of ant communities in a biodiversity hotspot.

PubMed

Woodcock, Paul; Edwards, David P; Newton, Rob J; Vun Khen, Chey; Bottrell, Simon H; Hamer, Keith C

2013-01-01

Trophic organisation defines the flow of energy through ecosystems and is a key component of community structure. Widespread and intensifying anthropogenic disturbance threatens to disrupt trophic organisation by altering species composition and relative abundances and by driving shifts in the trophic ecology of species that persist in disturbed ecosystems. We examined how intensive disturbance caused by selective logging affects trophic organisation in the biodiversity hotspot of Sabah, Borneo. Using stable nitrogen isotopes, we quantified the positions in the food web of 159 leaf-litter ant species in unlogged and logged rainforest and tested four predictions: (i) there is a negative relationship between the trophic position of a species in unlogged forest and its change in abundance following logging, (ii) the trophic positions of species are altered by logging, (iii) disturbance alters the frequency distribution of trophic positions within the ant assemblage, and (iv) disturbance reduces food chain length. We found that ant abundance was 30% lower in logged forest than in unlogged forest but changes in abundance of individual species were not related to trophic position, providing no support for prediction (i). However, trophic positions of individual species were significantly higher in logged forest, supporting prediction (ii). Consequently, the frequency distribution of trophic positions differed significantly between unlogged and logged forest, supporting prediction (iii), and food chains were 0.2 trophic levels longer in logged forest, the opposite of prediction (iv). Our results demonstrate that disturbance can alter trophic organisation even without trophically-biased changes in community composition. Nonetheless, the absence of any reduction in food chain length in logged forest suggests that species-rich arthropod food webs do not experience trophic downgrading or a related collapse in trophic organisation despite the disturbance caused by logging. These food webs appear able to bend without breaking in the face of some forms of anthropogenic disturbance.

Trap-Nesting Hymenoptera and Their Network with Parasites in Recovered Riparian Forests Brazil.

PubMed

Araujo, G J; Fagundes, R; Antonini, Y

2018-02-01

Different aspects of human activities can cause environmental change that endanger species persistence, alter species distributions, and lead to changes in antagonistic and mutualistic interactions, whereas deforestation and flooding of riparian forest results in landscapes consisting of patchily distributed riparian forest fragments in a matrix of pastures, plantations, and urban areas. Therefore, we assessed the richness, abundance, and trophic interactions of trap-nesting Hymenoptera and their parasites at four patches of restored riparian forest and at one reference natural fragment, of different sizes and ages, located at the Volta Grande Reservoir, in Minas Gerais and São Paulo states to answer the following questions: (1) Does the richness and abundance of cavity-nesting bees and wasps differ in riparian forest fragments according to the seasonal periods? (2) Does the composition of cavity-nesting bees and wasps vary among restoration and reference sites and between climate seasons (wet and dry)? (3) How do the degrees of specialization of the parasites vary among the patches of forest? We recorded 12 species of wasps, eight of bees, and nine species of parasites. Areas with longer time since restoration (reference site) showed higher species richness. However, the abundance was higher in most recent areas. The composition of bee and wasp assembly has not significantly changed between the climate seasons, although it is different between sampling areas. The richness and abundance were higher in warmer and rainy periods. The rate of bee and wasp mortality was high. The degree of specialization of parasites varies among sampling units, and the network of host-parasite interaction has a modular configuration with generalists and specialists. We concluded that the restored areas with more complex habitat could provide better conditions for the reestablishment of ecological interactions among these insects, the local flora, and other invertebrates, which together contribute to the success of the restored environments.

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

PubMed Central

Kubo, Kyoko; Lloyd, Karen G; F Biddle, Jennifer; Amann, Rudolf; Teske, Andreas; Knittel, Katrin

2012-01-01

Members of the highly diverse Miscellaneous Crenarchaeotal Group (MCG) are globally distributed in various marine and continental habitats. In this study, we applied a polyphasic approach (rRNA slot blot hybridization, quantitative PCR (qPCR) and catalyzed reporter deposition FISH) using newly developed probes and primers for the in situ detection and quantification of MCG crenarchaeota in diverse types of marine sediments and microbial mats. In general, abundance of MCG (cocci, 0.4 μm) relative to other archaea was highest (12–100%) in anoxic, low-energy environments characterized by deeper sulfate depletion and lower microbial respiration rates (P=0.06 for slot blot and P=0.05 for qPCR). When studied in high depth resolution in the White Oak River estuary and Hydrate Ridge methane seeps, changes in MCG abundance relative to total archaea and MCG phylogenetic composition did not correlate with changes in sulfate reduction or methane oxidation with depth. In addition, MCG abundance did not vary significantly (P>0.1) between seep sites (with high rates of methanotrophy) and non-seep sites (with low rates of methanotrophy). This suggests that MCG are likely not methanotrophs. MCG crenarchaeota are highly diverse and contain 17 subgroups, with a range of intragroup similarity of 82 to 94%. This high diversity and widespread distribution in subsurface sediments indicates that this group is globally important in sedimentary processes. PMID:22551871

Variations in abundance, diversity and community composition of airborne fungi in swine houses across seasons

PubMed Central

Kumari, Priyanka; Woo, Cheolwoon; Yamamoto, Naomichi; Choi, Hong-Lim

2016-01-01

We examined the abundance, diversity and community composition of airborne fungi in swine houses during winter and summer seasons by using quantitative PCR and Illumina HiSeq sequencing of ITS1 region. The abundance of airborne fungi varied significantly only between seasons, while fungal diversity varied significantly both within and between seasons, with both abundance and diversity peaked in winter. The fungal OTU composition was largely structured by the swine house unit and season as well as by their interactions. Of the measured microclimate variables, relative humidity, particulate matters (PMs), ammonia, and stocking density were significantly correlated with fungal OTU composition. The variation in beta diversity was higher within swine houses during summer, which indicates that the airborne fungal community composition was more heterogeneous in summer compared to winter. We also identified several potential allergen/pathogen related fungal genera in swine houses. The total relative abundance of potential allergen/pathogen related fungal genera varied between swine houses in both seasons, and showed positive correlation with PM2.5. Overall, our findings show that the abundance, diversity and composition of airborne fungi are highly variable in swine houses and to a large extent structured by indoor microclimate variables of swine houses. PMID:27892507

Soil Microbial Community Responses to Short-term Multiple Experimental Climate Change Drivers

NASA Astrophysics Data System (ADS)

Li, Guanlin; Lee, Jongyeol; Lee, Sohye; Roh, Yujin; Son, Yowhan

2016-04-01

It is agreed that soil microbial communities are responsible for the cycling of carbon and nutrients in ecosystems; however, the response of these microbial communities to climate change has not been clearly understood. In this study, we measured the direct and interactive effects of climate change drivers on soil bacterial and fungal communities (abundance and composition) in an open-field multifactor climate change experiment. The experimental treatment system was established with two-year-old Pinus densiflora seedlings at Korea University in April 2013, and consisted of six different treatments with three replicates: two levels of air temperature warming (control and +3° C) were crossed with three levels of precipitation manipulation (control, -30% and +30%). After 2.5 years of treatments, in August, 2015, soil samples were collected from the topsoil (0-15cm) of all plots (n=18). High-throughput sequencing technology was used to assess the abundance and composition of soil bacterial and fungal community. Analysis of variance for a blocked split-plot design was used to detect the effects of climate change drivers and their interaction on the abundance and composition of soil bacterial and fungal community. Our results showed that 1) only the significant effect of warming on fungal community abundance was observed (P <0.05); 2) on average, warming decreased both bacterial and fungal community abundance by 20.90% and 32.30%, 6.69% and 45.89%, 14.71% and 19.56% in control, decreased, and increased precipitation plots, respectively; 3) however, warming increased the relative bacterium/fungus ratio on average by 14.03%, 37.03% and 14.31% in control, decreased, and increased precipitation plots, respectively; 4) the phylogenetic distribution of bacterial and fungal groups and their relative abundance varied among treatments; 5) treatments altered the relative abundance of Ascomycota and Basidiomycota, where Ascomycota decreased with a concomitant increase in the Basidiomycota across all treatments; and 6) the shift induced by treatments in the dominant fungal group was larger than bacterial group. Since soil microorganisms differ in their susceptibility to stressors, the changes in the soil microbial communities may result from treatment-induced shifts in soil temperature and moisture. Our results indicate that climate change drivers and their interactions may cause changes in abundance and composition of soil microbial communities, especially for the fungal community. These results illustrate climate change drivers and their interactions may select for distinct soil microbial communities, and these community changes may shape the way ecosystems function in the future. This study was supported by National Research Foundation of Korea (NRF-2013R1A1A2012242).

Influence of the spatial distribution of cementation on the permeability and mechanical attributes of sedimentary and fault rocks

NASA Astrophysics Data System (ADS)

Mozley, P.; Yoon, H.; Williams, R. T.; Goodwin, L. B.

2015-12-01

The spatial distribution of pore-filling authigenic minerals (cements) is highly variable and controlled in large part by the mineralogy of the cements and host sediment grains. Two end-member distributions of cements that commonly occur in sedimentary material are: (1) concretionary, in which precipitation occurred in specific zones throughout the sediment, with intervening areas largely uncemented; and (2) grain-rimming, in which precipitation occurred on grain-surfaces relatively uniformly throughout the rock. Concretions form in rocks in which sediment grains have a different composition from the cement, whereas rim cements form in those that have the same composition. Both the mechanical attributes and permeability of a given volume of rock are affected to a much greater extent by grain rimming cements, which have a significant impact on properties at even low abundances. Concretionary cements have little impact on bulk properties until relatively large volumes have precipitated (~80% cemented) and concretions begin to link up. Precipitation of cement in fault zones also impacts both mechanical and hydrologic properties. Cementation will stiffen and strengthen unlithified sediment, thereby controlling the locus of fracturing in protolith or damage zones. Where fracture networks form in fault damage zones, they are initially high permeability elements. However, progressive cementation greatly diminishes fracture permeability, resulting in cyclical permeability variation linked to fault slip. To quantitatively describe the interactions of groundwater flow, permeability, and patterns and abundance of cements, we use pore-scale modeling of coupled fluid flow, reactive transport, and heterogeneous mineral-surface reactions. By exploring the effects of varying distributions of porosity and mineralogy, which impact patterns of cementation, we provide mechanistic explanations of the interactions of coupled processes under various flow and chemistry conditions.

Evidence for a Heterogeneous Distribution of Water in the Martian Interior

NASA Technical Reports Server (NTRS)

McCubbin, Francis; Boyce, Jeremy W.; Srinvasan, Poorna; Santos, Alison R.; Elardo, Stephen M.; Filiberto, Justin; Steele, Andrew; Shearer, Charles K.

2016-01-01

The abundance and distribution of H2O within the terrestrial planets, as well as its timing of delivery, is a topic of vital importance for understanding the chemical and physical evolution of planets and their potential for hosting habitable environments. Analysis of planetary materials from Mars, the Moon, and the eucrite parent body (i.e., asteroid 4Vesta) have confirmed the presence of H2O within their interiors. Moreover, H and N isotopic data from these planetary materials suggests H2O was delivered to the inner solar system very early from a common source, similar in composition to the carbonaceous chondrites. Despite the ubiquity of H2O in the inner Solar System, the only destination with any prospects for past or present habitable environments at this time, outside of the Earth, is Mars. Although the presence of H2O within the martian interior has been confirmed, very little is known regarding its abundance and distribution within the martian interior and how the martian water inventory has changed over time. By combining new analyses of martian apatites within a large number of martian meteorite types with previously published volatile data and recently determined mineral-melt partition coefficients for apatite, we report new insights into the abundance and distribution of volatiles in the martian crust and mantle. Using the subset of samples that did not exhibit crustal contamination, we determined that the enriched shergottite mantle source has 36-73 ppm H2O and the depleted shergottite mantle source has 14-23 ppm H2O. This result is consistent with other observed geochemical differences between enriched and depleted shergottites and supports the idea that there are at least two geochemically distinct reservoirs in the martian mantle. We also estimated the H2O content of the martian crust using the revised mantle H2O abundances and known crust-mantle distributions of incompatible lithophile elements. We determined that the bulk martian crust has approximately 1400 ppm H2O, which is likely distributed toward the martian surface. This crustal water abundance would equate to a global equivalent layer (GEL) of water at a depth of-229 m, which can account for at least some of the surface features on Mars attributed to flowing water and may be sufficient to support the past presence of a shallow sea on Mars' surface.

The community diversity of two Caribbean MPAs invaded by lionfish does not support the biotic resistance hypothesis

NASA Astrophysics Data System (ADS)

Cobián-Rojas, Dorka; Schmitter-Soto, Juan J.; Aguilar Betancourt, Consuelo M.; Aguilar-Perera, Alfonso; Ruiz-Zárate, Miguel Á.; González-Sansón, Gaspar; Chevalier Monteagudo, Pedro P.; Herrera Pavón, Roberto; García Rodríguez, Alain; Corrada Wong, Raúl I.; Cabrera Guerra, Delmis; Salvat Torres, Héctor; Perera Valderrama, Susana

2018-04-01

Marine protected areas (MPAs) conserve diversity and abundance of fish communities. According to the biotic resistance hypothesis, communities with higher diversity and abundance should resist invasions better. To test this idea, the presence of lionfish in two Caribbean MPAs was studied: Parque Nacional Guanahacabibes (PNG) in Cuba and Parque Nacional Arrecifes de Xcalak (PNAX) in Mexico. Selection of these MPAs was based on both their different levels of success with enforcement and different abundances of native fish, with a more abundant native fish fauna at PNG. Underwater visual censuses were used to evaluate both the native fish structure and composition and at the same time distribution and abundance of lionfish. The abundance of potential predators on lionfish was also measured to determine possible effects of lionfish on both the abundance and the size of its prey and competitors. Lionfish showed higher abundance and larger size in PNG compared to PNAX, even though its probable competitors and predators were also more abundant and larger in PNG. Prey abundance and size decreased after the invasion. No correlation was detected between potential predators and lionfish, which might indicate natural predation is not substantial. In PNAX, lower abundance of prey, potential competitors and predators can also be attributed to historical overfishing, but this did not provide an advantage to lionfish. Lionfish were less abundant and reached smaller sizes in PNAX compared to PNG. This work confirms the effectiveness of lionfish culling at PNAX, but does not support the biotic resistence hypothesis that native fish might have controlled this invasive species.

Cutting through the smoke: the diversity of microorganisms in deep-sea hydrothermal plumes

PubMed Central

Mikalsen, Svein-Ole; Giebel, Helge-Ansgar; Rogers, Alex D.

2017-01-01

There are still notable gaps regarding the detailed distribution of microorganisms between and within insular habitats such as deep-sea hydrothermal vents. This study investigates the community composition of black smoker vent microorganisms in the Southern Hemisphere, and changes thereof along a spatial and chemical gradient ranging from the vent plume to surrounding waters. We sampled two hydrothermal vent fields, one at the South West Indian Ridge (SWIR), the other at the East Scotia Ridge (ESR). Samples were collected across vent fields at varying vertical distances from the origin of the plumes. The microbial data were sequenced on an Illumina MiSeq platform for the 16SrRNA gene. A substantial amount of vent-specific putative chemosynthetic microorganisms were found, particularly in samples from focused hydrothermal venting. Common vent-specific organisms from both vent fields were the genera Arcobacter, Caminibacter and Sulfurimonas from the Epsilonproteobacteria and the SUP05 group from the Gammaproteobacteria. There were no major differences in microbial composition between SWIR and ESR for focused plume samples. However, within the ESR the diffuse flow and focused samples differed significantly in microbial community composition and relative abundance. For Epsilonproteobacteria, we found evidence of niche-specificity to hydrothermal vent environments. This taxon decreased in abundance by three orders of magnitude from the vent orifice to background water. Epsilonproteobacteria distribution followed a distance–decay relationship as vent-effluents mixed with the surrounding seawater. This study demonstrates strong habitat affinity of vent microorganisms on a metre scale with distinct environmental selection. PMID:28484604

Distribution, abundance and carbon isotopic composition of gaseous hydrocarbons in Big Soda Lake, Nevada - An alkaline, meromictic lake

NASA Technical Reports Server (NTRS)

Oremland, R. S.; Des Marais, D. J.

1983-01-01

The study of the distribution and isotopic composition of low molecular weight hydrocarbon gases at the Big Soda Lake, Nevada, has shown that while neither ethylene nor propylene were found in the lake, ethane, propane, isobutane and n-butane concentrations all increased with water column depth. It is concluded that methane has a biogenic origin in both the sediments and the anoxic water column, and that C2-C4 alkanes have biogenic origins in the monimolimnion water and shallow sediments. The changes observed in delta C-13/CH4/ and CH4/(C2H6 + C3H8) with depth in the water column and sedimeents are probably due to bacterial processes, which may include anaerobic methane oxidation and different rates of methanogenesis, and C2-to-C4 alkane production by microorganisms.

A regional assessment of white-tailed deer effects on plant invasion

PubMed Central

Mortensen, David A; Smithwick, Erica A H; Kalisz, Susan; McShea, William J; Bourg, Norman A; Parker, John D; Royo, Alejandro A; Abrams, Marc D; Apsley, David K; Blossey, Bernd; Boucher, Douglas H; Caraher, Kai L; DiTommaso, Antonio; Johnson, Sarah E; Masson, Robert; Nuzzo, Victoria A

2018-01-01

Abstract Herbivores can profoundly influence plant species assembly, including plant invasion, and resulting community composition. Population increases of native herbivores, e.g. white-tailed deer (Odocoileus virginianus), combined with burgeoning plant invasions raise concerns for native plant diversity and forest regeneration. While individual researchers typically test for the impact of deer on plant invasion at a few sites, the overarching influence of deer on plant invasion across regional scales is unclear. We tested the effects of deer on the abundance and diversity of introduced and native herbaceous and woody plants across 23 white-tailed deer research sites distributed across the east-central and north-eastern USA and representing a wide range of deer densities and invasive plant abundance and identity. Deer access/exclusion or deer population density did not affect introduced plant richness or community-level abundance. Native and total plant species richness, abundance (cover and stem density) and Shannon diversity were lower in deer-access vs. deer-exclusion plots. Among deer-access plots, native species richness, native and total cover, and Shannon diversity (cover) declined as deer density increased. Deer access increased the proportion of introduced species cover (but not of species richness or stem density). As deer density increased, the proportion of introduced species richness, cover and stem density all increased. Because absolute abundance of introduced plants was unaffected by deer, the increase in proportion of introduced plant abundance is likely an indirect effect of deer reducing native cover. Indicator species analysis revealed that deer access favoured three introduced plant species, including Alliaria petiolata and Microstegium vimineum, as well as four native plant species. In contrast, deer exclusion favoured three introduced plant species, including Lonicera japonica and Rosa multiflora, and 15 native plant species. Overall, native deer reduced community diversity, lowering native plant richness and abundance, and benefited certain invasive plants, suggesting pervasive impacts of this keystone herbivore on plant community composition and ecosystem services in native forests across broad swathes of the eastern USA. PMID:29340133

DOE Office of Scientific and Technical Information (OSTI.GOV)

Averill, Kristine M.; Mortensen, David A.; Smithwick, Erica A. H.

Herbivores can profoundly influence plant species assembly, including plant invasion, and resulting community composition. Population increases of native herbivores, e.g., white-tailed deer (Odocoileus virginianus), combined with burgeoning plant invasions raise concerns for native plant diversity and forest regeneration. While individual researchers typically test for the impact of deer on plant invasion at a few sites, the overarching influence of deer on plant invasion across regional scales is unclear. We tested the effects of deer on the abundance and diversity of introduced and native herbaceous and woody plants across 23 white-tailed deer research sites distributed across the east central and northeasternmore » United States and representing a wide range of deer densities and invasive plant abundance and identity. Deer access/exclusion or deer population density did not affect introduced plant richness or community-level abundance. Native and total plant species richness, abundance (cover and stem density), and Shannon diversity were lower in deer-access vs. deer-exclusion plots. Among deer access plots, native species richness, native and total cover, and Shannon diversity (cover) declined as deer density increased. Deer access increased the proportion of introduced species cover (but not of species richness or stem density). As deer density increased, the proportion of introduced species richness, cover, and stem density all increased. Because absolute abundance of introduced plants was unaffected by deer, the increase in proportion of introduced plant abundance is likely an indirect effect of deer reducing native cover. Indicator species analysis revealed that deer access favored three introduced plant species, including Alliaria petiolata and Microstegium vimineum, as well as four native plant species. In contrast, deer exclusion favored three introduced plant species, including Lonicera japonica and Rosa multiflora, and fifteen native plant species. Overall, native deer reduced community diversity, lowering native plant richness and abundance, and benefited certain invasive plants, suggesting pervasive impacts of this keystone herbivore on plant community composition and ecosystem services in native forests across broad swathes of the eastern US.« less

A regional assessment of white-tailed deer effects on plant invasion

DOE Office of Scientific and Technical Information (OSTI.GOV)

Averill, Kristine M.; Mortensen, David A.; Smithwick, Erica A. H.

Herbivores can profoundly influence plant species assembly, including plant invasion, and resulting community composition. Population increases of native herbivores, e.g., white-tailed deer ( Odocoileus virginianus), combined with burgeoning plant invasions raise concerns for native plant diversity and forest regeneration. While individual researchers typically test for the impact of deer on plant invasion at a few sites, the overarching influence of deer on plant invasion across regional scales is unclear. We tested the effects of deer on the abundance and diversity of introduced and native herbaceous and woody plants across 23 white-tailed deer research sites distributed across the east central andmore » northeastern United States and representing a wide range of deer densities and invasive plant abundance and identity. Deer access/exclusion or deer population density did not affect introduced plant richness or community-level abundance. Native and total plant species richness, abundance (cover and stem density), and Shannon diversity were lower in deer-access vs. deer-exclusion plots. Among deer access plots, native species richness, native and total cover, and Shannon diversity (cover) declined as deer density increased. Deer access increased the proportion of introduced species cover (but not of species richness or stem density). As deer density increased, the proportion of introduced species richness, cover, and stem density all increased. Because absolute abundance of introduced plants was unaffected by deer, the increase in proportion of introduced plant abundance is likely an indirect effect of deer reducing native cover. Indicator species analysis revealed that deer access favored three introduced plant species, including Alliaria petiolata and Microstegium vimineum, as well as four native plant species. In contrast, deer exclusion favored three introduced plant species, including Lonicera japonica and Rosa multiflora, and fifteen native plant species. Altogether, native deer reduced community diversity, lowering native plant richness and abundance, and benefited certain invasive plants, suggesting pervasive impacts of this keystone herbivore on plant community composition and ecosystem services in native forests across broad swathes of the eastern US.« less

A regional assessment of white-tailed deer effects on plant invasion

DOE PAGES

Averill, Kristine M.; Mortensen, David A.; Smithwick, Erica A. H.; ...

2017-12-07

Herbivores can profoundly influence plant species assembly, including plant invasion, and resulting community composition. Population increases of native herbivores, e.g., white-tailed deer ( Odocoileus virginianus), combined with burgeoning plant invasions raise concerns for native plant diversity and forest regeneration. While individual researchers typically test for the impact of deer on plant invasion at a few sites, the overarching influence of deer on plant invasion across regional scales is unclear. We tested the effects of deer on the abundance and diversity of introduced and native herbaceous and woody plants across 23 white-tailed deer research sites distributed across the east central andmore » northeastern United States and representing a wide range of deer densities and invasive plant abundance and identity. Deer access/exclusion or deer population density did not affect introduced plant richness or community-level abundance. Native and total plant species richness, abundance (cover and stem density), and Shannon diversity were lower in deer-access vs. deer-exclusion plots. Among deer access plots, native species richness, native and total cover, and Shannon diversity (cover) declined as deer density increased. Deer access increased the proportion of introduced species cover (but not of species richness or stem density). As deer density increased, the proportion of introduced species richness, cover, and stem density all increased. Because absolute abundance of introduced plants was unaffected by deer, the increase in proportion of introduced plant abundance is likely an indirect effect of deer reducing native cover. Indicator species analysis revealed that deer access favored three introduced plant species, including Alliaria petiolata and Microstegium vimineum, as well as four native plant species. In contrast, deer exclusion favored three introduced plant species, including Lonicera japonica and Rosa multiflora, and fifteen native plant species. Altogether, native deer reduced community diversity, lowering native plant richness and abundance, and benefited certain invasive plants, suggesting pervasive impacts of this keystone herbivore on plant community composition and ecosystem services in native forests across broad swathes of the eastern US.« less

Turf algae-mediated coral damage in coastal reefs of Belize, Central America.

PubMed

Wild, Christian; Jantzen, Carin; Kremb, Stephan Georg

2014-01-01

Many coral reefs in the Caribbean experienced substantial changes in their benthic community composition during the last decades. This often resulted in phase shifts from scleractinian coral dominance to that by other benthic invertebrate or algae. However, knowledge about how the related role of coral-algae contacts may negatively affect corals is scarce. Therefore, benthic community composition, abundance of algae grazers, and the abundance and character of coral-algae contacts were assessed in situ at 13 Belizean reef sites distributed along a distance gradient to the Belizean mainland (12-70 km): Mesoamerican Barrier Reef (inshore), Turneffe Atoll (inner and outer midshore), and Lighthouse Reef (offshore). In situ surveys revealed significantly higher benthic cover by scleractinian corals at the remote Lighthouse Reef (26-29%) when compared to the other sites (4-19%). The abundance of herbivorous fish and the sea urchin Diadema antillarum significantly increased towards the offshore reef sites, while the occurrence of direct coral-algae contacts consequently increased significantly with decreasing distance to shore. About 60% of these algae contacts were harmful (exhibiting coral tissue damage, pigmentation change, or overgrowth) for corals (mainly genera Orbicella and Agaricia), particularly when filamentous turf algae were involved. These findings provide support to the hypothesis that (turf) algae-mediated coral damage occurs in Belizean coastal, near-shore coral reefs.

Soil physicochemical factors as environmental filters for spontaneous plant colonization of abandoned tailing dumps.

PubMed

Ginocchio, Rosanna; León-Lobos, Pedro; Arellano, Eduardo Carlos; Anic, Vinka; Ovalle, Juan Francisco; Baker, Alan John Martin

2017-05-01

Abandoned tailing dumps (ATDs) offer an opportunity to identify the main physicochemical filters that determine colonization of vegetation in solid mine wastes. The current study determined the soil physicochemical factors that explain the compositional variation of pioneer vegetal species on ATDs from surrounding areas in semiarid Mediterranean-climate type ecosystems of north-central Chile (Coquimbo Region). Geobotanical surveys-including physicochemical parameters of substrates (0-20 cm depth), plant richness, and coverage of plant species-were performed on 73 ATDs and surrounding areas. A total of 112 plant species were identified from which endemic/native species (67%) were more abundant than exotic species (33%) on ATDs. The distribution of sampling sites and plant species in canonical correspondence analysis (CCA) ordination diagrams indicated a gradual and progressive variation in species composition and abundance from surrounding areas to ATDs because of variations in total Cu concentration (1.3%) and the percentage of soil particles <2 μm (1.8%). According to the CCA, there were 10 plant species with greater abundance on sites with high total Cu concentrations and fine-textured substrates, which could be useful for developing plant-based stabilization programs of ATDs in semiarid Mediterranean-climate type ecosystems of north-central Chile.

SOLAR WIND HEAVY IONS OVER SOLAR CYCLE 23: ACE/SWICS MEASUREMENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lepri, S. T.; Landi, E.; Zurbuchen, T. H.

2013-05-01

Solar wind plasma and compositional properties reflect the physical properties of the corona and its evolution over time. Studies comparing the previous solar minimum with the most recent, unusual solar minimum indicate that significant environmental changes are occurring globally on the Sun. For example, the magnetic field decreased 30% between the last two solar minima, and the ionic charge states of O have been reported to change toward lower values in the fast wind. In this work, we systematically and comprehensively analyze the compositional changes of the solar wind during cycle 23 from 2000 to 2010 while the Sun movedmore » from solar maximum to solar minimum. We find a systematic change of C, O, Si, and Fe ionic charge states toward lower ionization distributions. We also discuss long-term changes in elemental abundances and show that there is a {approx}50% decrease of heavy ion abundances (He, C, O, Si, and Fe) relative to H as the Sun went from solar maximum to solar minimum. During this time, the relative abundances in the slow wind remain organized by their first ionization potential. We discuss these results and their implications for models of the evolution of the solar atmosphere, and for the identification of the fast and slow wind themselves.« less

Multiwavelength Observations of Volatiles in Comets

NASA Technical Reports Server (NTRS)

Milam, Stefanie N.; Charnley, Steven B.; Kuan, Yi-Jehng; Chuang, Yo-Ling; DiSanti, Michael A.; Bonev, Boncho P.; Remijan, Anthony J.

2011-01-01

Recently, there have been complimentary observations from multiple facilities to try to unravel the chemical complexity of comets. Incorporating results from various techniques, including: single-dish millimeter wavelength observations, interferometers, and/or IR spectroscopy, one can gain further insight into the abundances, production rates, distributions, and formation mechanisms of molecules in these objects [I]. Such studies have provided great detail towards molecules with a-typical chemistries, such as H2CO [2]. We report spectral observations of C/2006 M4 (SWAN), C/2007 N3 (Lulin), and C/2009 RI (McNaught) with the Arizona Radio Observatory's SMT and 12-m telescopes, as well as the NRAO Greenbank telescope and IRTFCSHELL. Multiple parent volatiles (HCN, CH3OH, CO, CH4, C2H6, and H2O) plus two photodissociation products (CS and OH) have been detected in these objects. We will present a comparison of molecular abundances in these comets to those observed in others, supporting a long-term effort of building a comet taxonomy based on composition. Previous work has revealed a range of abundances of parent species (from "organics-poor" to "organics-rich") with respect to water among comets [3,4,5], however the statistics are stiII poorly constrained and interpretations of the observed compositional diversity are uncertain.

Characterizing Abundances of Volatiles in Comets Through Multiwavelength Observations

NASA Technical Reports Server (NTRS)

Milam, Stefanie N.; Charnley, Steven B.; Kuan, Yi-Jehng; Chuang, Yo-Ling; DiSanti, Michael A.; Bonev, Boncho P.; Remijan, Anthony J.; Coulson, Iain; Haynes, Lillian; Stenborg, Maria

2012-01-01

Recently, there have been complimentary observations from multiple facilities to try to unravel the chemical complexity of comets. Incorporating results from various techniques, including: single-dish millimeter wavelength observations, interferometers, and/or IR spectroscopy, one can gain further insight into the abundances, production rates, distributions, and formation mechanisms of molecules in these objects [I]. Such studies have provided great detail towards molecules with a-typical chemistries, such as H2CO [2]. We report spectral observations of C/2007 N3 (Lulin), C/2009 R1 (McNaught), 103P/Hartley 2, and C/2009 P1 (Garradd) with the Arizona Radio Observatory's SMT and 12-m telescopes, as well as the NRAO Greenbank telescope and IRTF-CSHELL. Multiple parent volatiles (HCN, CH3OH, CO, CH4, C2H6, and H2O) as well as a number of daughter products (CS and OH) have been detected in these objects. We will present a comparison of molecular abundances in these comets to those observed in others, supporting a long-term effort of building a comet taxonomy based on composition. Previous work has revealed a range of abundances of parent species (from "organics-poor" to "organics-rich") with respect to water among comets [3,4,5], however the statistics are still poorly constrained and interpretations of the observed compositional diversity are uncertain. We gratefully acknowledge support from the NSF Astronomy and Astrophysics Program, the NASA Planetary Astronomy Program, NASA Planetary Atmospheres Program, and the NASA Astrobiology Program.

Accurate Modeling of X-ray Extinction by Interstellar Grains

NASA Astrophysics Data System (ADS)

Hoffman, John; Draine, B. T.

2016-02-01

Interstellar abundance determinations from fits to X-ray absorption edges often rely on the incorrect assumption that scattering is insignificant and can be ignored. We show instead that scattering contributes significantly to the attenuation of X-rays for realistic dust grain size distributions and substantially modifies the spectrum near absorption edges of elements present in grains. The dust attenuation modules used in major X-ray spectral fitting programs do not take this into account. We show that the consequences of neglecting scattering on the determination of interstellar elemental abundances are modest; however, scattering (along with uncertainties in the grain size distribution) must be taken into account when near-edge extinction fine structure is used to infer dust mineralogy. We advertise the benefits and accuracy of anomalous diffraction theory for both X-ray halo analysis and near edge absorption studies. We present an open source Fortran suite, General Geometry Anomalous Diffraction Theory (GGADT), that calculates X-ray absorption, scattering, and differential scattering cross sections for grains of arbitrary geometry and composition.

Influence of 2015 flood on the distribution and occurrence of microplastic pellets along the Chennai coast, India.

PubMed

Veerasingam, S; Mugilarasan, M; Venkatachalapathy, R; Vethamony, P

2016-08-15

The sources, distribution, surface features, polymer composition and age of microplastic pellets (MPPs) in surface sediments along the Chennai coast during March 2015 (pre-Chennai flood) and November 2015 (post-Chennai flood) were characterised using a Stereoscopic microscope and FTIR-ATR spectroscopy. White MPPs were the most abundant, and specifically polyethylene (PE) and polypropylene (PP) were the dominant polymer types of MPPs found on the coast during both the times. The abundance of MPPs in November 2015 was three-fold higher than those found in March 2015, confirming that huge quantity of fresh MPPs washed through Cooum and Adyar rivers from land during the flood. The winds and surface currents during November were the driving forces for the transportation and deposition of MPPs from the sea to beaches. The results of this study will be useful to formulate beach MPPs litter management policies to effectively create long-term solutions. Copyright © 2016 Elsevier Ltd. All rights reserved.

High-levels of microplastic pollution in a large, remote, mountain lake.

PubMed

Free, Christopher M; Jensen, Olaf P; Mason, Sherri A; Eriksen, Marcus; Williamson, Nicholas J; Boldgiv, Bazartseren

2014-08-15

Despite the large and growing literature on microplastics in the ocean, little information exists on microplastics in freshwater systems. This study is the first to evaluate the abundance, distribution, and composition of pelagic microplastic pollution in a large, remote, mountain lake. We quantified pelagic microplastics and shoreline anthropogenic debris in Lake Hovsgol, Mongolia. With an average microplastic density of 20,264 particles km(-2), Lake Hovsgol is more heavily polluted with microplastics than the more developed Lakes Huron and Superior in the Laurentian Great Lakes. Fragments and films were the most abundant microplastic types; no plastic microbeads and few pellets were observed. Household plastics dominated the shoreline debris and were comprised largely of plastic bottles, fishing gear, and bags. Microplastic density decreased with distance from the southwestern shore, the most populated and accessible section of the park, and was distributed by the prevailing winds. These results demonstrate that without proper waste management, low-density populations can heavily pollute freshwater systems with consumer plastics. Copyright © 2014 Elsevier Ltd. All rights reserved.

Evolution of plant–pollinator mutualisms in response to climate change

PubMed Central

Gilman, R Tucker; Fabina, Nicholas S; Abbott, Karen C; Rafferty, Nicole E

2012-01-01

Climate change has the potential to desynchronize the phenologies of interdependent species, with potentially catastrophic effects on mutualist populations. Phenologies can evolve, but the role of evolution in the response of mutualisms to climate change is poorly understood. We developed a model that explicitly considers both the evolution and the population dynamics of a plant–pollinator mutualism under climate change. How the populations evolve, and thus whether the populations and the mutualism persist, depends not only on the rate of climate change but also on the densities and phenologies of other species in the community. Abundant alternative mutualist partners with broad temporal distributions can make a mutualism more robust to climate change, while abundant alternative partners with narrow temporal distributions can make a mutualism less robust. How community composition and the rate of climate change affect the persistence of mutualisms is mediated by two-species Allee thresholds. Understanding these thresholds will help researchers to identify those mutualisms at highest risk owing to climate change. PMID:25568025

Nature, formation, and distribution of carbonates on Ceres.

PubMed

Carrozzo, Filippo Giacomo; De Sanctis, Maria Cristina; Raponi, Andrea; Ammannito, Eleonora; Castillo-Rogez, Julie; Ehlmann, Bethany L; Marchi, Simone; Stein, Nathaniel; Ciarniello, Mauro; Tosi, Federico; Capaccioni, Fabrizio; Capria, Maria Teresa; Fonte, Sergio; Formisano, Michelangelo; Frigeri, Alessandro; Giardino, Marco; Longobardo, Andrea; Magni, Gianfranco; Palomba, Ernesto; Zambon, Francesca; Raymond, Carol A; Russell, Christopher T

2018-03-01

Different carbonates have been detected on Ceres, and their abundance and spatial distribution have been mapped using a visible and infrared mapping spectrometer (VIR), the Dawn imaging spectrometer. Carbonates are abundant and ubiquitous across the surface, but variations in the strength and position of infrared spectral absorptions indicate variations in the composition and amount of these minerals. Mg-Ca carbonates are detected all over the surface, but localized areas show Na carbonates, such as natrite (Na 2 CO 3 ) and hydrated Na carbonates (for example, Na 2 CO 3 ·H 2 O). Their geological settings and accessory NH 4 -bearing phases suggest the upwelling, excavation, and exposure of salts formed from Na-CO 3 -NH 4 -Cl brine solutions at multiple locations across the planet. The presence of the hydrated carbonates indicates that their formation/exposure on Ceres' surface is geologically recent and dehydration to the anhydrous form (Na 2 CO 3 ) is ongoing, implying a still-evolving body.

Experimental Manipulation of Grassland Plant Diversity Induces Complex Shifts in Aboveground Arthropod Diversity

PubMed Central

Hertzog, Lionel R.; Meyer, Sebastian T.; Weisser, Wolfgang W.; Ebeling, Anne

2016-01-01

Changes in producer diversity cause multiple changes in consumer communities through various mechanisms. However, past analyses investigating the relationship between plant diversity and arthropod consumers focused only on few aspects of arthropod diversity, e.g. species richness and abundance. Yet, shifts in understudied facets of arthropod diversity like relative abundances or species dominance may have strong effects on arthropod-mediated ecosystem functions. Here we analyze the relationship between plant species richness and arthropod diversity using four complementary diversity indices, namely: abundance, species richness, evenness (equitability of the abundance distribution) and dominance (relative abundance of the dominant species). Along an experimental gradient of plant species richness (1, 2, 4, 8, 16 and 60 plant species), we sampled herbivorous and carnivorous arthropods using pitfall traps and suction sampling during a whole vegetation period. We tested whether plant species richness affects consumer diversity directly (i), or indirectly through increased productivity (ii). Further, we tested the impact of plant community composition on arthropod diversity by testing for the effects of plant functional groups (iii). Abundance and species richness of both herbivores and carnivores increased with increasing plant species richness, but the underlying mechanisms differed between the two trophic groups. While higher species richness in herbivores was caused by an increase in resource diversity, carnivore richness was driven by plant productivity. Evenness of herbivore communities did not change along the gradient in plant species richness, whereas evenness of carnivores declined. The abundance of dominant herbivore species showed no response to changes in plant species richness, but the dominant carnivores were more abundant in species-rich plant communities. The functional composition of plant communities had small impacts on herbivore communities, whereas carnivore communities were affected by forbs of small stature, grasses and legumes. Contrasting patterns in the abundance of dominant species imply different levels of resource specialization for dominant herbivores (narrow food spectrum) and carnivores (broad food spectrum). That in turn could heavily affect ecosystem functions mediated by herbivorous and carnivorous arthropods, such as herbivory or biological pest control. PMID:26859496

The Holocene sedimentary record of cyanobacterial glycolipids in the Baltic Sea: an evaluation of their application as tracers of past nitrogen fixation

NASA Astrophysics Data System (ADS)

Sollai, Martina; Hopmans, Ellen C.; Bale, Nicole J.; Mets, Anchelique; Warden, Lisa; Moros, Matthias; Sinninghe Damsté, Jaap S.

2017-12-01

Heterocyst glycolipids (HGs) are lipids exclusively produced by heterocystous dinitrogen-fixing cyanobacteria. The Baltic Sea is an ideal environment to study the distribution of HGs and test their potential as biomarkers because of its recurring summer phytoplankton blooms, dominated by a few heterocystous cyanobacterial species of the genera Nodularia and Aphanizomenon. A multi-core and a gravity core from the Gotland Basin were analyzed to determine the abundance and distribution of a suite of selected HGs at a high resolution to investigate the changes in past cyanobacterial communities during the Holocene. The HG distribution of the sediments deposited during the Modern Warm Period (MoWP) was compared with those of cultivated heterocystous cyanobacteria, including those isolated from Baltic Sea waters, revealing high similarity. However, the abundance of HGs dropped substantially with depth, and this may be caused by either a decrease in the occurrence of the cyanobacterial blooms or diagenesis, resulting in partial destruction of the HGs. The record also shows that the HG distribution has remained stable since the Baltic turned into a brackish semi-enclosed basin ˜ 7200 cal. yr BP. This suggests that the heterocystous cyanobacterial species composition remained relatively stable as well. During the earlier freshwater phase of the Baltic (i.e., the Ancylus Lake and Yoldia Sea phases), the distribution of the HGs varied much more than in the subsequent brackish phase, and the absolute abundance of HGs was much lower than during the brackish phase. This suggests that the cyanobacterial community adjusted to the different environmental conditions in the basin. Our results confirm the potential of HGs as a specific biomarker of heterocystous cyanobacteria in paleo-environmental studies.

Distribution of epibenthic megafauna and lebensspuren on two central North Pacific seamounts

NASA Astrophysics Data System (ADS)

Kaufmann, Ronald S.; Wakefield, W. Waldo; Genin, Amatzia

1989-12-01

The abundance, composition and spatial distribution of megafaunal communities and lebensspuren assemblages at three sites on two deep seamounts in the central North Pacific were surveyed photographically using still cameras mounted on the research submersible Alvin. Photographic transects were made on the summit cap (˜1500 m depth) and summit perimeter (˜ 1800 m depth) of Horizon Guyot and on the summit cap (˜3100 m depth) of Magellan Rise. The summit caps of both seamounts were covered with foraminiferal sand, while the summit perimeter of Horizon Guyot was characterized by numerous rock outcroppings (basalt and chert encrusted with ferromanganese oxides) on which was situated a speciose assemblage of suspension-feeding organisms. The most abundant megafauna at all three sites were large, sediment-agglutinating protists belonging to the class Xenophyophorea. Among the three sites, the Horizon Guyot summit cap supported the highest densities of fishes and lebensspuren and the fewest echinoderms, while the Magellan Rise summit cap was populated by a diverse community of deposit-feeding echinoderms. Megafaunal abundances on Horizon Guyot were lower than those at equivalent depths on the western North Atlantic continental slope, while those on Magellan Rise were higher. The faunal differences observed between the two seamounts were attributed primarily to differences in hydrodynamic conditions, substrate availability and nutrient availability. Most of the lebensspuren on these seamounts appeared to be patchily distributed on spatial scales of 10-1000 m, while xenophyophore distributions were predominantly random on the same spatial scales. Biogeographically the species identified exhibited predominantly widespread to cosmopolitan distributions with Indo-West Pacific faunal affinities, typical of other seamounts in the same depth range and biogeographic province.

Grouping of Petroleum Substances as Example UVCBs by Ion Mobility-Mass Spectrometry to Enable Chemical Composition-Based Read-Across.

PubMed

Grimm, Fabian A; Russell, William K; Luo, Yu-Syuan; Iwata, Yasuhiro; Chiu, Weihsueh A; Roy, Tim; Boogaard, Peter J; Ketelslegers, Hans B; Rusyn, Ivan

2017-06-20

Substances of Unknown or Variable composition, Complex reaction products, and Biological materials (UVCBs), including many refined petroleum products, present a major challenge in regulatory submissions under the EU Registration, Evaluation, Authorisation and Restriction of Chemicals (REACH) and US High Production Volume regulatory regimes. The inherent complexity of these substances, as well as variability in composition obfuscates detailed chemical characterization of each individual substance and their grouping for human and environmental health evaluation through read-across. In this study, we applied ion mobility mass spectrometry in conjunction with cheminformatics-based data integration and visualization to derive substance-specific signatures based on the distribution and abundance of various heteroatom classes. We used petroleum substances from four petroleum substance manufacturing streams and evaluated their chemical composition similarity based on high-dimensional substance-specific quantitative parameters including m/z distribution, drift time, carbon number range, and associated double bond equivalents and hydrogen-to-carbon ratios. Data integration and visualization revealed group-specific similarities for petroleum substances. Observed differences within a product group were indicative of batch- or manufacturer-dependent variation. We demonstrate how high-resolution analytical chemistry approaches can be used effectively to support categorization of UVCBs based on their heteroatom composition and how such data can be used in regulatory decision-making.

Effects of topoclimatic complexity on the composition of woody plant communities.

PubMed

Oldfather, Meagan F; Britton, Matthew N; Papper, Prahlad D; Koontz, Michael J; Halbur, Michelle M; Dodge, Celeste; Flint, Alan L; Flint, Lorriane E; Ackerly, David D

2016-01-01

Topography can create substantial environmental variation at fine spatial scales. Shaped by slope, aspect, hill-position and elevation, topoclimate heterogeneity may increase ecological diversity, and act as a spatial buffer for vegetation responding to climate change. Strong links have been observed between climate heterogeneity and species diversity at broader scales, but the importance of topoclimate for woody vegetation across small spatial extents merits closer examination. We established woody vegetation monitoring plots in mixed evergreen-deciduous woodlands that spanned topoclimate gradients of a topographically heterogeneous landscape in northern California. We investigated the association between the structure of adult and regenerating size classes of woody vegetation and multidimensional topoclimate at a fine scale. We found a significant effect of topoclimate on both single-species distributions and community composition. Effects of topoclimate were evident in the regenerating size class for all dominant species (four Quercus spp., Umbellularia californica and Pseudotsuga menziesii) but only in two dominant species (Quercus agrifolia and Quercus garryana) for the adult size class. Adult abundance was correlated with water balance parameters (e.g. climatic water deficit) and recruit abundance was correlated with an interaction between the topoclimate parameters and conspecific adult abundance (likely reflecting local seed dispersal). However, in all cases, the topoclimate signal was weak. The magnitude of environmental variation across our study site may be small relative to the tolerance of long-lived woody species. Dispersal limitations, management practices and patchy disturbance regimes also may interact with topoclimate, weakening its influence on woody vegetation distributions. Our study supports the biological relevance of multidimensional topoclimate for mixed woodland communities, but highlights that this relationship might be mediated by interacting factors at local scales. Published by Oxford University Press on behalf of the Annals of Botany Company.

Effects of topoclimatic complexity on the composition of woody plant communities

PubMed Central

Oldfather, Meagan F.; Britton, Matthew N.; Papper, Prahlad D.; Koontz, Michael J.; Halbur, Michelle M.; Dodge, Celeste; Flint, Alan L.; Flint, Lorriane E.; Ackerly, David D.

2016-01-01

Topography can create substantial environmental variation at fine spatial scales. Shaped by slope, aspect, hill-position and elevation, topoclimate heterogeneity may increase ecological diversity, and act as a spatial buffer for vegetation responding to climate change. Strong links have been observed between climate heterogeneity and species diversity at broader scales, but the importance of topoclimate for woody vegetation across small spatial extents merits closer examination. We established woody vegetation monitoring plots in mixed evergreen-deciduous woodlands that spanned topoclimate gradients of a topographically heterogeneous landscape in northern California. We investigated the association between the structure of adult and regenerating size classes of woody vegetation and multidimensional topoclimate at a fine scale. We found a significant effect of topoclimate on both single-species distributions and community composition. Effects of topoclimate were evident in the regenerating size class for all dominant species (four Quercus spp., Umbellularia californica and Pseudotsuga menziesii) but only in two dominant species (Quercus agrifolia and Quercus garryana) for the adult size class. Adult abundance was correlated with water balance parameters (e.g. climatic water deficit) and recruit abundance was correlated with an interaction between the topoclimate parameters and conspecific adult abundance (likely reflecting local seed dispersal). However, in all cases, the topoclimate signal was weak. The magnitude of environmental variation across our study site may be small relative to the tolerance of long-lived woody species. Dispersal limitations, management practices and patchy disturbance regimes also may interact with topoclimate, weakening its influence on woody vegetation distributions. Our study supports the biological relevance of multidimensional topoclimate for mixed woodland communities, but highlights that this relationship might be mediated by interacting factors at local scales. PMID:27339048

Combining Taxonomic and Functional Approaches to Unravel the Spatial Distribution of an Amazonian Butterfly Community.

PubMed

Graça, Márlon B; Morais, José W; Franklin, Elizabeth; Pequeno, Pedro A C L; Souza, Jorge L P; Bueno, Anderson Saldanha

2016-04-01

This study investigated the spatial distribution of an Amazonian fruit-feeding butterfly assemblage by linking species taxonomic and functional approaches. We hypothesized that: 1) vegetation richness (i.e., resources) and abundance of insectivorous birds (i.e., predators) should drive changes in butterfly taxonomic composition, 2) larval diet breadth should decrease with increase of plant species richness, 3) small-sized adults should be favored by higher abundance of birds, and 4) communities with eyespot markings should be able to exploit areas with higher predation pressure. Fruit-feeding butterflies were sampled with bait traps and insect nets across 25 km(2) of an Amazonian ombrophilous forest in Brazil. We measured larval diet breadth, adult body size, and wing marking of all butterflies. Our results showed that plant species richness explained most of the variation in butterfly taxonomic turnover. Also, community average diet breadth decreased with increase of plant species richness, which supports our expectations. In contrast, community average body size increased with the abundance of birds, refuting our hypothesis. We detected no influence of environmental gradients on the occurrence of species with eyespot markings. The association between butterfly taxonomic and functional composition points to a mediator role of the functional traits in the environmental filtering of butterflies. The incorporation of the functional approach into the analyses allowed for the detection of relationships that were not observed using a strictly taxonomic perspective and provided an extra insight into comprehending the potential adaptive strategies of butterflies. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Variations of Leaf Cuticular Waxes Among C3 and C4 Gramineae Herbs.

PubMed

He, Yuji; Gao, Jianhua; Guo, Na; Guo, Yanjun

2016-11-01

Modern C4 plants are commonly distributed in hot and dry environments whereas C3 plants predominate in cool and shade areas. At the outmost of plant surface, the deposition and chemical composition of cuticular waxes vary under different environmental conditions. However, whether such variation of cuticular wax is related to the distribution of C3 and C4 under different environmental conditions is still not clear. In this study, leaves of six C3 Gramineae herbs distributed in spring, Roegneria kamoji, Polypogon fugax, Poa annua, Avena fatua, Alopecurus aequalis, and Oplismenus undulatifolius, and four C4 and one C3 Gramineae herbs distributed in summer, Digitaria sanguinalis, Eleusine indica, Setaria viridis, S. plicata, and O. undulatifolius, were sampled and analyzed for cuticular wax. Plates were the main epicuticular wax morphology in both C3 and C4 plants except S. plicata. The plates melted in C4 plants but not in C3 plants. The total cuticular wax amounts in C4 plants were significantly lower than those in C3 plants, except for O. undulatifolius. Primary alcohols were the most abundant compounds in C3 plants, whereas n-alkanes were relatively the most abundant compounds in C4 plants. C 29 was the most abundant n-alkane in C3 plants except for O. undulatifolius, whereas the most abundant n-alkane was C 31 or C 33 in C4 plants. The average chain length (ACL) of n-alkanes was higher in C4 than in C3 plants, whereas the ACL of n-alkanoic acids was higher in C3 than C4 plants. The cluster analysis based on the distribution of n-alkanes clearly distinguished C3 and C4 plants into two groups, except for O. undulatifolius which was grouped with C4 plants. These results suggest that the variations of cuticular waxes among C3 and C4 Gramineae herbs are related to the distribution of C3 and C4 plants under different environmental conditions. © 2016 Wiley-VHCA AG, Zurich, Switzerland.

Telescope Array measurement of UHECR composition from stereoscopic fluorescence detection

NASA Astrophysics Data System (ADS)

Stroman, Thomas; Bergman, Douglas; Abu Zayyad, Tareq

2014-03-01

The chemical composition of ultra-high-energy cosmic rays (UHECRs) is an important constraint on models of UHECR production and propagation, and must be determined experimentally. A UHECR-induced extensive air shower's longitudinal development is dictated by the energy per nucleon of the primary particle. The observed distribution of atmospheric slant depths (Xmax) is therefore sensitive to the composition, facilitating measurement of the relative abundances of ``light'' (proton-like) and ``heavy'' (iron-like) primary UHECR particles. The Telescope Array (TA) experiment, the northern hemisphere's largest UHECR detector, includes three fluorescence detector (FD) stations that record the longitudinal development of the extensive air showers produced by UHECR arrivals. ``Stereo'' observation of individual showers by multiple FDs tightly constrains the trajectory reconstruction, allowing a precise measurement of Xmax as well as energy. We will present the stereo TA data from six years of operation and progress toward a measurement of chemical composition.

Large-Scale Removal of Invasive Honeysuckle Decreases Mosquito and Avian Host Abundance.

PubMed

Gardner, Allison M; Muturi, Ephantus J; Overmier, Leah D; Allan, Brian F

2017-12-01

Invasive species rank second only to habitat destruction as a threat to native biodiversity. One consequence of biological invasions is altered risk of exposure to infectious diseases in human and animal populations. The distribution and prevalence of mosquito-borne diseases depend on the complex interactions between the vector, the pathogen, and the human or wildlife reservoir host. These interactions are highly susceptible to disturbance by invasive species, including terrestrial plants. We conducted a 2-year field experiment using a Before-After/Control-Impact design to examine how removal of invasive Amur honeysuckle (Lonicera maackii) in a forest fragment embedded within a residential neighborhood affects the abundance of mosquitoes, including two of the most important vectors of West Nile virus, Culex pipiens and Cx. restuans. We also assessed any potential changes in avian communities and local microclimate associated with Amur honeysuckle removal. We found that (1) removal of Amur honeysuckle reduces the abundance of both vector and non-vector mosquito species that commonly feed on human hosts, (2) the abundance and composition of avian hosts is altered by honeysuckle removal, and (3) areas invaded with honeysuckle support local microclimates that are favorable to mosquito survival. Collectively, our investigations demonstrate the role of a highly invasive understory shrub in determining the abundance and distribution of mosquitoes and suggest potential mechanisms underlying this pattern. Our results also give rise to additional questions regarding the general impact of invasive plants on vector-borne diseases and the spatial scale at which removal of invasive plants may be utilized to effect disease control.

Spider assemblages associated with different crop stages of irrigated rice agroecosystems from eastern Uruguay

PubMed Central

Ginella, Juaquín; Cadenazzi, Mónica; Castiglioni, Enrique A.; Martínez, Sebastián; Casales, Luis; Caraballo, María P.; Laborda, Álvaro; Simo, Miguel

2018-01-01

Abstract The rice crop and associated ecosystems constitute a rich mosaic of habitats that preserve a rich biological diversity. Spiders are an abundant and successful group of natural predators that are considered efficient in the biocontrol of the major insect pests in agroecosystems. Spider diversity in different stages of the rice crop growth from eastern Uruguay was analysed. Field study was developed on six rice farms with rotation system with pasture, installed during intercropping stage as cover crop. Six rice crops distributed in three locations were sampled with pitfall and entomological vaccum suction machine. Sixteen families, representing six guilds, were collected. Lycosidae, Linyphiidae, Anyphaenidae and Tetragnathidae were the most abundant families (26%, 25%, 20% and 12%, respectively) and comprised more than 80% of total abundance. Other hunters (29%), sheet web weavers (25%) and ground hunters (24%) were the most abundant guilds. Species composition along different crop stages was significantly different according to the ANOSIM test. The results showed higher spider abundance and diversity along the crop and intercrop stages. This study represents the first contribution to the knowledge of spider diversity associated with rice agroecosystem in the country. PMID:29755261

Spider assemblages associated with different crop stages of irrigated rice agroecosystems from eastern Uruguay.

PubMed

Bao, Leticia; Ginella, Juaquín; Cadenazzi, Mónica; Castiglioni, Enrique A; Martínez, Sebastián; Casales, Luis; Caraballo, María P; Laborda, Álvaro; Simo, Miguel

2018-01-01

The rice crop and associated ecosystems constitute a rich mosaic of habitats that preserve a rich biological diversity. Spiders are an abundant and successful group of natural predators that are considered efficient in the biocontrol of the major insect pests in agroecosystems. Spider diversity in different stages of the rice crop growth from eastern Uruguay was analysed. Field study was developed on six rice farms with rotation system with pasture, installed during intercropping stage as cover crop. Six rice crops distributed in three locations were sampled with pitfall and entomological vaccum suction machine. Sixteen families, representing six guilds, were collected. Lycosidae, Linyphiidae, Anyphaenidae and Tetragnathidae were the most abundant families (26%, 25%, 20% and 12%, respectively) and comprised more than 80% of total abundance. Other hunters (29%), sheet web weavers (25%) and ground hunters (24%) were the most abundant guilds. Species composition along different crop stages was significantly different according to the ANOSIM test. The results showed higher spider abundance and diversity along the crop and intercrop stages. This study represents the first contribution to the knowledge of spider diversity associated with rice agroecosystem in the country.

The composition and morphology of amphiboles from the Rainy Creek complex, near Libby, Montana

USGS Publications Warehouse

Meeker, G.P.; Bern, A.M.; Brownfield, I.K.; Lowers, H.A.; Sutley, S.J.; Hoefen, T.M.; Vance, J.S.

2003-01-01

Thirty samples of amphibole-rich rock from the largest mined vermiculite deposit in the world in the Rainy Creek alkaline-ultramafic complex near Libby, Montana, were collected and analyzed. The amphibole-rich rock is the suspected cause of an abnormally high number of asbestos-related diseases reported in the residents of Libby, and in former mine and mill workers. The amphibole-rich samples were analyzed to determine composition and morphology of both fibrous and non-fibrous amphiboles. Sampling was carried out across the accessible portions of the deposit to obtain as complete a representation of the distribution of amphibole types as possible. The range of amphibole compositions, determined from electron probe microanalysis and X-ray diffraction analysis, indicates the presence of winchite, richterite, tremolite, and magnesioriebeckite. The amphiboles from Vermiculite Mountain show nearly complete solid solution between these end-member compositions. Magnesio-arfvedsonite and edenite may also be present in low abundance. An evaluation of the textural characteristics of the amphiboles shows the material to include a complete range of morphologies from prismatic crystals to asbestiform fibers. The morphology of the majority of the material is intermediate between these two varieties. All of the amphiboles, with the possible exception of magnesioriebeckite, can occur in fibrous or asbestiform habit. The Vermiculite Mountain amphiboles, even when originally present as massive material, can produce abundant, extremely fine fibers by gentle abrasion or crushing.

Spatio-temporal variation of fish taxonomic composition in a South-East Asian flood-pulse system.

PubMed

Kong, Heng; Chevalier, Mathieu; Laffaille, Pascal; Lek, Sovan

2017-01-01

The Tonle Sap Lake (TSL) is a flood-pulse system. It is the largest natural lake in South-East Asia and constitutes one of the largest fisheries over the world, supporting the livelihood of million peoples. Nonetheless, the Mekong River Basin is changing rapidly due to accelerating water infrastructure development (hydropower, irrigation, flood control, and water supply) and climate change, bringing considerable modifications to the annual flood-pulse of the TSL. Such modifications are expected to have strong impacts on fish biodiversity and abundance. This paper aims to characterize the spatio-temporal variations of fish taxonomic composition and to highlights the underlying determinants of these variations. For this purpose, we used data collected from a community catch monitoring program conducted at six sites during 141 weeks, covering two full hydrological cycles. For each week, we estimated beta diversity as the total variance of the site-by-species community matrix and partitioned it into Local Contribution to Beta Diversity (LCBD) and Species Contribution to Beta Diversity (SCBD). We then performed multiple linear regressions to determine whether species richness, species abundances and water level explained the temporal variation in the contribution of site and species to beta diversity. Our results indicate strong temporal variation of beta diversity due to differential contributions of sites and species to the spatial variation of fish taxonomic composition. We further found that the direction, the shape and the relative effect of species richness, abundances and water level on temporal variation in LCBD and SCBD values greatly varied among sites, thus suggesting spatial variation in the processes leading to temporal variation in community composition. Overall, our results suggest that fish taxonomic composition is not homogeneously distributed over space and time and is likely to be impacted in the future if the flood-pulse dynamic of the system is altered by human activities.

Abundance and community structure of ammonia-oxidizing Archaea and Bacteria in response to fertilization and mowing in a temperate steppe in Inner Mongolia.

PubMed

Chen, Yong-Liang; Hu, Hang-Wei; Han, Hong-Yan; Du, Yue; Wan, Shi-Qiang; Xu, Zhu-Wen; Chen, Bao-Dong

2014-07-01

Based on a 6-year field trial in a temperate steppe in Inner Mongolia, we investigated the effects of nitrogen (N) and phosphorus (P) fertilization and mowing on the abundance and community compositions of ammonia-oxidizing Bacteria (AOB) and Archaea (AOA) upon early (May) and peak (August) plant growth using quantitative PCR (qPCR), terminal-restriction fragment length polymorphism (T-RFLP), cloning and sequencing. The results showed that N fertilization changed AOB community composition and increased AOB abundance in both May and August, but significantly decreased AOA abundance in May. By contrast, P fertilization significantly influenced AOB abundance only in August. Mowing significantly decreased AOA abundance and had little effect on AOA community compositions in May, while significantly influencing AOB abundance in both May and August, Moreover, AOA and AOB community structures showed obvious seasonal variations between May and August. Phylogenetic analysis showed that all AOA sequences fell into the Nitrososphaera cluster, and the AOB community was dominated by Nitrosospira Cluster 3. The results suggest that fertilization and mowing play important roles in affecting the abundance and community compositions of AOA and AOB. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Meteoritic material on the moon

NASA Technical Reports Server (NTRS)

Morgan, J. W.; Ganapathy, R.; Higuchi, H.; Anders, E.

1977-01-01

Three types of meteoritic material are found on the moon: micrometeorites, ancient planetesimal debris from the "early intense bombardment," and debris of recent, craterforming projectiles. Their amounts and compositions have been determined from trace element studies. The micrometeorite component is uniformly distributed over the entire lunar surface, but is seen most clearly in mare soils. It has a primitive, C1-chondrite-like composition, and comprises 1 to 1.5 percent of mature soils. Apparently it represents cometary debris. The ancient component is seen in highland breccias and soils. Six varieties have been recognized, differing in their proportions of refractories (Ir, Re), volatiles (Ge, Sb), and Au. All have a fractionated composition, with volatiles depleted relative to siderophiles. The abundance patterns do not match those of the known meteorite classes. These ancient meteoritic components seem to represent the debris of an extinct population of bodies (planetisimals, moonlets) that produced the mare basins during the first 700 Myr of the moon's history. On the basis of their stratigraphy and geographic distribution, five of the six groups are tentatively assigned to specific mare basins: Imbrium, Serenitatis, Crisium, Nectaris, and Humorum or Nubium.

Diversity, Abundance, and Niche Differentiation of Ammonia-Oxidizing Prokaryotes in Mud Deposits of the Eastern China Marginal Seas

PubMed Central

Yu, Shaolan; Yao, Peng; Liu, Jiwen; Zhao, Bin; Zhang, Guiling; Zhao, Meixun; Yu, Zhigang; Zhang, Xiao-Hua

2016-01-01

The eastern China marginal seas (ECMS) are prominent examples of river-dominated ocean margins, whose most characteristic feature is the existence of isolated mud patches on sandy sediments. Ammonia-oxidizing prokaryotes play a crucial role in the nitrogen cycles of many marine environments, including marginal seas. However, few studies have attempted to address the distribution patterns of ammonia-oxidizing prokaryotes in mud deposits of these seas. The horizontal and vertical community composition and abundance of ammonia-oxidizing archaea (AOA) and bacteria (AOB) were investigated in mud deposits of the South Yellow Sea (SYS) and the East China Sea (ECS) by using amoA clone libraries and quantitative PCR. The diversity of AOB was comparable or higher in the mud zone of SYS and lower in ECS when compared with AOA. Vertically, surface sediments had generally higher diversity of AOA and AOB than middle and bottom layers. Diversity of AOA and AOB showed significant correlation with latitude. Nitrosopumilus and Nitrosospira lineages dominated AOA and AOB communities, respectively. Both AOA and AOB assemblages exhibited greater variations across different sites than those among various depths at one site. The abundance of bacterial amoA was generally higher than that of archaeal amoA, and both of them decreased with depth. Niche differentiation, which was affected by dissolved oxygen, salinity, ammonia, and silicate (SiO32-), was observed between AOA and AOB and among different groups of them. The spatial distribution of AOA and AOB was significantly correlated with δ15NTN and SiO32-, and nitrate and δ13C, respectively. Both archaeal and bacterial amoA abundance correlated strongly with SiO32-. This study improves our understanding of spatial distribution of AOA and AOB in ecosystems featuring oceanic mud deposits. PMID:26904010

Prokaryotes in salt marsh sediments of Ria de Aveiro: Effects of halophyte vegetation on abundance and diversity

NASA Astrophysics Data System (ADS)

Oliveira, Vanessa; Santos, Ana L.; Aguiar, Claúdia; Santos, Luisa; Salvador, Ângelo C.; Gomes, Newton C. M.; Silva, Helena; Rocha, Sílvia M.; Almeida, Adelaide; Cunha, Ângela

2012-09-01

The aim of this study was to investigate the influence of monospecific colonization of sediment stands by Spartina maritima or Halimione portulacoides on benthic prokaryote assemblages in a salt marsh located in Ria de Aveiro (Portugal). The distribution of Bacteria, Archaea and sulfate-reducing bacteria (SRB) in sediments with monospecific plant stands and in unvegetated sediments was characterized by Fluorescence In Situ Hybridization (FISH). Total prokaryote abundance (0.4 × 109-1.7 × 109 cells gdw-1) was highest in sediments from the surface layer. The domain Bacteria comprised approximately 40% of total prokaryote communities with the highest percentages occurring in the surface layer. Archaeal cells corresponded to an average of 25% of total prokaryote population, with higher abundance in the vegetation banks, and displaying homogeneous vertical distribution. The relative abundance of SRB represented approximately 3% of total 4', 6-diamidino-2-phenylindole dihydrochloride (DAPI) stained cells at unvegetated sediment and H. portulacoides stand and 7% at S. maritima stand. Headspace solid-phase microextraction (HS-SPME) combined with Comprehensive Two-Dimensional Gas Chromatography-Time-of-Flight Mass Spectrometry (GC × GC-ToFMS) was used to analyse the volatile and semi-volatile fraction of root exudates. A total of 171 compounds were identified and Principal Component Analysis showed a clear separation between the chemical composition (volatile and semi-volatile organic compounds) of the exudates of the two plants. The patterns of vertical distribution and differences in the proportion of SRB and Archaea in the prokaryote communities developing in sediments colonized by Spartina maritima or Halimione portulacoides suggest the existence of plant-specific interactions between halophyte vegetation and estuarine sediment bacteria in Ria de Aveiro salt marshes, exerted via sediment lithology and root-derived exudates.

Species composition, diversity and relative abundance of amphibians in forests and non-forest habitats on Langkawi Island, Peninsular Malaysia

NASA Astrophysics Data System (ADS)

Nur Johana, J.; Muzzneena, A. M.; Grismer, L. L.; Norhayati, A.

2016-11-01

Anurans on Langkawi Island, Peninsular Malaysia exhibit variation in their habits and forms, ranging from small (SVL < 25 mm) to large (SVL > 150 mm), and occupy a range of habitats, such as riverine forests, agricultural fields, peat swamps, and lowland and upland dipterocarp forests. These variations provide a platform to explore species diversity, distribution, abundance, microhabitat, and other ecological parameters to understand the distribution patterns and to facilitate conservation and management of sensitive or important species and areas. The objective of this study was to evaluate the diversity and distribution of anuran species in different types of habitat on Langkawi Island. Specimens were collected based on active sampling using the Visual Encounter Survey (VES) method. We surveyed anuran species inhabiting seven types of habitat, namely agriculture (AG), coastal (CL), forest (FT), pond (PD), mangrove (MG), riparian forest (RF) and river (RV). A total of 775 individuals were sampled from all localities, representing 23 species from 12 genera and included all six families of frogs in Malaysia. FT and RF showed high values of Shannon Index, H', 2.60 and 2.38, respectively, followed by the other types of habitat, CL (1.82), RV (1.71), MG (1.56), PD (1.54), and AG (1.53). AG had the highest abundance (156 individuals) compared to other habitat types. Based on Cluster Analysis by using Jaccard coefficient (UPGMA), two groups can be clearly seen and assigned as forested species group (FT and RF) and species associating with human activity (AG, CL, PD, MG and RV). Forest species group is more diverse compared to non-forest group. Nevertheless, non-forest species are found in abundance, highlighting the relevance of these disturbed habitats in supporting the amphibians.

Extraterrestrial amino acids identified in metal-rich CH and CB carbonaceous chondrites from Antarctica

NASA Astrophysics Data System (ADS)

Burton, Aaron S.; Elsila, Jamie E.; Hein, Jason E.; Glavin, Daniel P.; Dworkin, Jason P.

2013-03-01

Carbonaceous chondrites contain numerous indigenous organic compounds and could have been an important source of prebiotic compounds required for the origin of life on Earth or elsewhere. Extraterrestrial amino acids have been reported in five of the eight groups of carbonaceous chondrites and are most abundant in CI, CM, and CR chondrites but are also present in the more thermally altered CV and CO chondrites. We report the abundance, distribution, and enantiomeric and isotopic compositions of simple primary amino acids in six metal-rich CH and CB carbonaceous chondrites that have not previously been investigated for amino acids: Allan Hills (ALH) 85085 (CH3), Pecora Escarpment (PCA) 91467 (CH3), Patuxent Range (PAT) 91546 (CH3), MacAlpine Hills (MAC) 02675 (CBb), Miller Range (MIL) 05082 (CB), and Miller Range (MIL) 07411 (CB). Amino acid abundances and carbon isotopic values were obtained by using both liquid chromatography time-of-flight mass spectrometry and fluorescence, and gas chromatography isotope ratio mass spectrometry. The δ13C/12C ratios of multiple amino acids fall outside of the terrestrial range and support their extraterrestrial origin. Extracts of CH chondrites were found to be particularly rich in amino acids (13-16 parts per million, ppm) while CB chondrite extracts had much lower abundances (0.2-2 ppm). The amino acid distributions of the CH and CB chondrites were distinct from the distributions observed in type 2 and 3 CM and CR chondrites and contained elevated levels of β-, γ-, and δ-amino acids compared to the corresponding α-amino acids, providing evidence that multiple amino acid formation mechanisms were important in CH and CB chondrites.

Extraterrestrial Amino Acids Identified in Metal-Rich CH and CB Carbonaceous Chondrites from Antarctica

NASA Technical Reports Server (NTRS)

Burton, Aaron S.; Elsila, Jamie E.; Hein, Jason E.; Glavin, Daniel P.; Dworkin, Jason P.

2013-01-01

Carbonaceous chondrites contain numerous indigenous organic compounds and could have been an important source of prebiotic compounds required for the origin of life on Earth or elsewhere. Extraterrestrial amino acids have been reported in five of the eight groups of carbonaceous chondrites and are most abundant in CI, CM, and CR chondritesbut are also present in the more thermally altered CV and CO chondrites. We report the abundance, distribution, and enantiomeric and isotopic compositions of simple primary amino acids in six metal-rich CH and CB carbonaceous chondrites that have not previously been investigated for amino acids: Allan Hills (ALH) 85085 (CH3), Pecora Escarpment(PCA) 91467 (CH3), Patuxent Range (PAT) 91546 (CH3), MacAlpine Hills (MAC) 02675(CBb), Miller Range (MIL) 05082 (CB), and Miller Range (MIL) 07411 (CB). Amino acid abundances and carbon isotopic values were obtained by using both liquid chromatography time-of-flight mass spectrometry and fluorescence, and gas chromatography isotope ratiomass spectrometry. The (delta D, delta C-13, delta N-15) ratios of multiple amino acids fall outside of the terrestrial range and support their extraterrestrial origin. Extracts of CH chondrites were found to be particularly rich in amino acids (1316 parts per million, ppm) while CB chondrite extracts had much lower abundances (0.22 ppm). The amino acid distributions of the CH and CB chondrites were distinct from the distributions observed in type 2 and 3 CM and CR chondrites and contained elevated levels of beta-, gamma-, and delta-amino acids compared to the corresponding alpha-amino acids, providing evidence that multiple amino acid formation mechanisms were important in CH and CB chondrites.

Effects of habitat fragmentation on passerine birds breeding in Intermountain shrubsteppe

USGS Publications Warehouse

Knick, S.T.; Rotenberry, J.T.

2002-01-01

Habitat fragmentation and loss strongly influence the distribution and abundance of passerine birds breeding in Intermountain shrubsteppe. Wildfires, human activities, and change in vegetation communities often are synergistic in these systems and can result in radical conversion from shrubland to grasslands dominated by exotic annuals at large temporal and spatial scales from which recovery to native conditions is unlikely. As a result, populations of 5 of the 12 species in our review of Intermountain shrubsteppe birds are undergoing significant declines; 5 species are listed as at-risk or as candidates for protection in at least one state. The process by which fragmentation affects bird distributions in these habitats remains unknown because most research has emphasized the detection of population trends and patterns of habitat associations at relatively large spatial scales. Our research indicates that the distribution of shrubland-obligate species, such as Brewer's Sparrows (Spizella breweri), Sage Sparrows (Amphispiza belli), and Sage Thrashers (Oreoscoptes montanus), was highly sensitive to fragmentation of shrublands at spatial scales larger than individual home ranges. In contrast, the underlying mechanisms for both habitat change and bird population dynamics may operate independently of habitat boundaries. We propose alternative, but not necessarily exclusive, mechanisms to explain the relationship between habitat fragmentation and bird distribution and abundance. Fragmentation might influence productivity through differences in breeding density, nesting success, or predation. However, local and landscape variables were not significant determinants either of success, number fledged, or probability of predation or parasitism (although our tests had relatively low statistical power). Alternatively, relative absence of natal philopatry and redistribution by individuals among habitats following fledging or post-migration could account for the pattern of distribution and abundance. Thus, boundary dynamics may be important in determining the distribution of shrubland-obligate species but insignificant relative to the mechanisms causing the pattern of habitat and bird distribution. Because of the dichotomy in responses, Intermountain shrubsteppe systems present a unique challenge in understanding how landscape composition, configuration, and change influence bird population dynamics.

Markov Chain Monte Carlo Inversion of Mantle Temperature and Composition, with Application to Iceland

NASA Astrophysics Data System (ADS)

Brown, Eric; Petersen, Kenni; Lesher, Charles

2017-04-01

Basalts are formed by adiabatic decompression melting of the asthenosphere, and thus provide records of the thermal, chemical and dynamical state of the upper mantle. However, uniquely constraining the importance of these factors through the lens of melting is challenging given the inevitability that primary basalts are the product of variable mixing of melts derived from distinct lithologies having different melting behaviors (e.g. peridotite vs. pyroxenite). Forward mantle melting models, such as REEBOX PRO [1], are useful tools in this regard, because they can account for differences in melting behavior and melt pooling processes, and provide estimates of bulk crust composition and volume that can be compared with geochemical and geophysical constraints, respectively. Nevertheless, these models require critical assumptions regarding mantle temperature, and lithologic abundance(s)/composition(s), all of which are poorly constrained. To provide better constraints on these parameters and their uncertainties, we have coupled a Markov Chain Monte Carlo (MCMC) sampling technique with the REEBOX PRO melting model. The MCMC method systematically samples distributions of key REEBOX PRO input parameters (mantle potential temperature, and initial abundances and compositions of the source lithologies) based on a likelihood function that describes the 'fit' of the model outputs (bulk crust composition and volume and end-member peridotite and pyroxenite melts) relative to geochemical and geophysical constraints and their associated uncertainties. As a case study, we have tested and applied the model to magmatism along Reykjanes Peninsula in Iceland, where pyroxenite has been inferred to be present in the mantle source. This locale is ideal because there exist sufficient geochemical and geophysical data to estimate bulk crust compositions and volumes, as well as the range of near-parental melts derived from the mantle. We find that for the case of passive upwelling, the models that best fit the geochemical and geophysical observables require elevated mantle potential temperatures ( 120 °C above ambient mantle), and 5% pyroxenite. The modeled peridotite source has a trace element composition similar to depleted MORB mantle, whereas the trace element composition of the pyroxenite is similar to enriched mid-ocean ridge basalt. These results highlight the promise of this method for efficiently exploring the range of mantle temperatures, lithologic abundances, and mantle source compositions that are most consistent with available observational constraints in individual volcanic systems. 1 Brown and Lesher (2016), G-cubed, 17, 3929-3968

CHEMICAL TAGGING OF THREE DISTINCT POPULATIONS OF RED GIANTS IN THE GLOBULAR CLUSTER NGC 6752

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carretta, E.; Bragaglia, A.; Gratton, R. G.

2012-05-01

We present aluminum, magnesium, and silicon abundances in the metal-poor globular cluster NGC 6752 for a sample of more than 130 red giants with homogeneous oxygen and sodium abundances. We find that [Al/Fe] shows a spread of about 1.4 dex among giants in NGC 6752 and is anticorrelated with [Mg/Fe] and [O/Fe] and correlated with [Na/Fe] and [Si/Fe]. These relations are not continuous in nature, but the distribution of stars is clearly clustered around three distinct Al values, low, intermediate, and high. These three groups nicely correspond to the three distinct sequences previously detected using Stroemgren photometry along the redmore » giant branch. These two independent findings strongly indicate the existence of three distinct stellar populations in NGC 6752. Comparing the abundances of O and Mg, we find that the population with intermediate chemical abundances cannot originate from material with the same composition of the most O- and Mg-poor population, diluted by material with that of the most O- and Mg-rich one. This calls for different polluters.« less

Lunar Ferroan Anorthosite Petrogenesis: Clues from Trace Element Distributions in FAN Subgroups

NASA Astrophysics Data System (ADS)

Floss, Christine; James, Odette B.; McGee, James J.; Crozaz, Ghislaine

1998-04-01

The rare earth elements (REE) and selected other trace elements were measured in plagioclase and pyroxene from nine samples of the lunar ferroan anorthosite (FAN) suite of rocks. Samples were selected from each of four FAN subgroups previously defined by James et al. (1989). Plagioclase compositions are homogeneous within each sample, but high- and low-Ca pyroxenes from lithic clasts typically have different REE abundances from their counterparts in the surrounding granulated matrices. Measured plagioclase/low-Ca pyroxene concentration ratios for the REE have steeper patterns than experimentally determined plagioclase/low-Ca pyroxene partition coefficients in most samples. Textural and trace element evidence suggest that, although subsolidus equilibration may be responsible for some of the discrepancy, plagioclase compositions in most samples have been largely unaffected by intermineral redistribution of the REE. The REE systematics of plagioclase from the four subgroups are broadly consistent with their derivation through crystallization from a single evolving magma. However, samples from some of the subgroups exhibit a decoupling of plagioclase and pyroxene compositions that probably reflects the complexities inherent in crystallization from a large-scale magmatic system. For example, two anorthosites with very magnesian mafic minerals have highly evolved trace element compositions; major element compositions in plagioclase also do not reflect the evolutionary sequence recorded by their REE compositions. Finally, a noritic anorthosite breccia with relatively ferroan mafic minerals contains several clasts with high and variable REE and other trace element abundances. Although plagioclase REE compositions are consistent with their derivation from a magma with a KREEPy trace element signature, very shallow REE patterns in the pyroxenes suggest the addition of a component enriched in the light REE.

Molecular composition and size distribution of sugars, sugar-alcohols and carboxylic acids in airborne particles during a severe urban haze event caused by wheat straw burning

NASA Astrophysics Data System (ADS)

Wang, Gehui; Chen, Chunlei; Li, Jianjun; Zhou, Bianhong; Xie, Mingjie; Hu, Shuyuan; Kawamura, Kimitaka; Chen, Yan

2011-05-01

Molecular compositions and size distributions of water-soluble organic compounds (WSOC, i.e., sugars, sugar-alcohols and carboxylic acids) in particles from urban air of Nanjing, China during a severe haze event caused by field burning of wheat straw were characterized and compared with those in the summer and autumn non-haze periods. During the haze event levoglucosan (4030 ng m -3) was the most abundant compound among the measured WSOC, followed by succinic acid, malic acid, glycerol, arabitol and glucose, being different from those in the non-haze samples, in which sucrose or azelaic acid showed a second highest concentration, although levoglucosan was the highest. The measured WSOC in the haze event were 2-20 times more than those in the non-hazy days. Size distribution results showed that there was no significant change in the compound peaks in coarse mode (>2.1 μm) with respect to the haze and non-haze samples, but a large difference in the fine fraction (<2.1 μm) was found with a sharp increase during the hazy days mostly due to the increased emissions of wheat straw burning. Molecular compositions of organic compounds in the fresh smoke particles from wheat straw burning demonstrate that sharply increased concentrations of glycerol and succinic and malic acids in the fine particles during the haze event were mainly derived from the field burning of wheat straw, although the sources of glucose and related sugar-alcohols whose concentrations significantly increased in the fine haze samples are unclear. Compared to that in the fresh smoke particles of wheat straw burning an increase in relative abundance of succinic acid to levoglucosan during the haze event suggests a significant production of secondary organic aerosols during transport of the smoke plumes.

Biogeography of seabirds within a high-latitude ecosystem: Use of a data-assimilative ocean model to assess impacts of mesoscale oceanography

NASA Astrophysics Data System (ADS)

Santora, Jarrod A.; Eisner, Lisa B.; Kuletz, Kathy J.; Ladd, Carol; Renner, Martin; Hunt, George L., Jr.

2018-02-01

We assessed the biogeography of seabirds within the Bering Sea Large Marine Ecosystem (LME), a highly productive and extensive continental shelf system that supports important fishing grounds. Our objective was to investigate how physical ocean conditions impact distribution of seabirds along latitudinal gradients. We tested the hypothesis that seabird biogeographic patterns reflect differences in ocean conditions relating to the boundary between northern and southern shelf ecosystems. We used a grid-based approach to develop spatial means (1975-2014) of summertime seabird species' abundance, species' richness, and a multivariate seabird assemblage index to examine species composition. Seabird indices were linked to ocean conditions derived from a data-assimilative oceanographic model to quantify relationships between physics (e.g., temperature, salinity, and current velocity), bathymetry and seabirds along latitudinal gradients. Species assemblages reflected two main sources of variation, a mode for elevated richness and abundance, and a mode related to partitioning of inner/middle shelf species from outer shelf-slope species. Overall, species richness and abundance increased markedly at higher latitudes. We found that latitudinal changes in species assemblages, richness and abundance indicates a major shift around 59-60°N within inner and middle shelf regions, but not in the outer shelf. Within the middle shelf, latitudinal shifts in seabird assemblages strongly related to hydrographic structure, as opposed to the inner and outer shelf waters. As expected, elevated species richness and abundance was associated with major breeding colonies and within important coastal foraging areas. Our study also indicates that seabird observations supported the conclusion that the oceanographic model captured mesoscale variability of ocean conditions important for understanding seabird distributions and represents an important step for evaluating modeling and empirical studies. Biogeographic assessments of LMEs that integrate top predator distributions resolve critical habitat requirements and will benefit assessment of climate change impacts (e.g., sea-ice loss) predicted to affect high-latitude marine ecosystems.

Predictive modelling of grain-size distributions from marine electromagnetic profiling data using end-member analysis and a radial basis function network

NASA Astrophysics Data System (ADS)

Baasch, B.; Müller, H.; von Dobeneck, T.

2018-07-01

In this work, we present a new methodology to predict grain-size distributions from geophysical data. Specifically, electric conductivity and magnetic susceptibility of seafloor sediments recovered from electromagnetic profiling data are used to predict grain-size distributions along shelf-wide survey lines. Field data from the NW Iberian shelf are investigated and reveal a strong relation between the electromagnetic properties and grain-size distribution. The here presented workflow combines unsupervised and supervised machine-learning techniques. Non-negative matrix factorization is used to determine grain-size end-members from sediment surface samples. Four end-members were found, which well represent the variety of sediments in the study area. A radial basis function network modified for prediction of compositional data is then used to estimate the abundances of these end-members from the electromagnetic properties. The end-members together with their predicted abundances are finally back transformed to grain-size distributions. A minimum spatial variation constraint is implemented in the training of the network to avoid overfitting and to respect the spatial distribution of sediment patterns. The predicted models are tested via leave-one-out cross-validation revealing high prediction accuracy with coefficients of determination (R2) between 0.76 and 0.89. The predicted grain-size distributions represent the well-known sediment facies and patterns on the NW Iberian shelf and provide new insights into their distribution, transition and dynamics. This study suggests that electromagnetic benthic profiling in combination with machine learning techniques is a powerful tool to estimate grain-size distribution of marine sediments.

Predictive modelling of grain size distributions from marine electromagnetic profiling data using end-member analysis and a radial basis function network

NASA Astrophysics Data System (ADS)

Baasch, B.; M"uller, H.; von Dobeneck, T.

2018-04-01

In this work we present a new methodology to predict grain-size distributions from geophysical data. Specifically, electric conductivity and magnetic susceptibility of seafloor sediments recovered from electromagnetic profiling data are used to predict grain-size distributions along shelf-wide survey lines. Field data from the NW Iberian shelf are investigated and reveal a strong relation between the electromagnetic properties and grain-size distribution. The here presented workflow combines unsupervised and supervised machine learning techniques. Nonnegative matrix factorisation is used to determine grain-size end-members from sediment surface samples. Four end-members were found which well represent the variety of sediments in the study area. A radial-basis function network modified for prediction of compositional data is then used to estimate the abundances of these end-members from the electromagnetic properties. The end-members together with their predicted abundances are finally back transformed to grain-size distributions. A minimum spatial variation constraint is implemented in the training of the network to avoid overfitting and to respect the spatial distribution of sediment patterns. The predicted models are tested via leave-one-out cross-validation revealing high prediction accuracy with coefficients of determination (R2) between 0.76 and 0.89. The predicted grain-size distributions represent the well-known sediment facies and patterns on the NW Iberian shelf and provide new insights into their distribution, transition and dynamics. This study suggests that electromagnetic benthic profiling in combination with machine learning techniques is a powerful tool to estimate grain-size distribution of marine sediments.

Microbial community composition explains soil respiration responses to changing carbon inputs along an Andes-to-Amazon elevation gradient

PubMed Central

Whitaker, Jeanette; Ostle, Nicholas; Nottingham, Andrew T; Ccahuana, Adan; Salinas, Norma; Bardgett, Richard D; Meir, Patrick; McNamara, Niall P; Austin, Amy

2014-01-01

1. The Andes are predicted to warm by 3–5 °C this century with the potential to alter the processes regulating carbon (C) cycling in these tropical forest soils. This rapid warming is expected to stimulate soil microbial respiration and change plant species distributions, thereby affecting the quantity and quality of C inputs to the soil and influencing the quantity of soil-derived CO2 released to the atmosphere. 2. We studied tropical lowland, premontane and montane forest soils taken from along a 3200-m elevation gradient located in south-east Andean Peru. We determined how soil microbial communities and abiotic soil properties differed with elevation. We then examined how these differences in microbial composition and soil abiotic properties affected soil C-cycling processes, by amending soils with C substrates varying in complexity and measuring soil heterotrophic respiration (RH). 3. Our results show that there were consistent patterns of change in soil biotic and abiotic properties with elevation. Microbial biomass and the abundance of fungi relative to bacteria increased significantly with elevation, and these differences in microbial community composition were strongly correlated with greater soil C content and C:N (nitrogen) ratios. We also found that RH increased with added C substrate quality and quantity and was positively related to microbial biomass and fungal abundance. 4. Statistical modelling revealed that RH responses to changing C inputs were best predicted by soil pH and microbial community composition, with the abundance of fungi relative to bacteria, and abundance of gram-positive relative to gram-negative bacteria explaining much of the model variance. 5. Synthesis. Our results show that the relative abundance of microbial functional groups is an important determinant of RH responses to changing C inputs along an extensive tropical elevation gradient in Andean Peru. Although we do not make an experimental test of the effects of climate change on soil, these results challenge the assumption that different soil microbial communities will be ‘functionally equivalent’ as climate change progresses, and they emphasize the need for better ecological metrics of soil microbial communities to help predict C cycle responses to climate change in tropical biomes. PMID:25520527

Long-term annual and monthly changes in mysids and caridean decapods in a macrotidal estuarine environment in relation to climate change and pollution

NASA Astrophysics Data System (ADS)

Plenty, Shaun J.; Tweedley, James R.; Bird, David J.; Newton, Lyn; Warwick, Richard M.; Henderson, Peter A.; Hall, Norm G.; Potter, Ian C.

2018-07-01

A 26-year time series of monthly samples from the water intake of a power station has been used to analyse the trends exhibited by number of species, total abundance, and composition of the mysids and caridean decapods in the inner Bristol Channel. During this period, annual water temperatures, salinities and the North Atlantic Oscillation Index (NAOI) in winter did not change significantly, whereas annual NAOI declined. Annual mean monthly values for the number of species and total abundance both increased over the 26 years, but these changes were not correlated with any of the measured physico-chemical/climatic factors. As previous studies demonstrated that, during a similar period, metal concentrations in the Severn Estuary and Bristol Channel (into which that estuary discharges) declined and water quality increased, it is proposed that the above changes are due to an improved environment. The fauna was dominated by the mysids Mesopodopsis slabberi and Schistomysis spiritus, which collectively contributed 94% to total abundance. Both species, which were represented by juveniles, males, non-brooding females and brooding females, underwent statistically-indistinguishable patterns of change in abundance over the 26 years. When analysis was based on the abundances of the various species, the overall species composition differed significantly among years and changed serially with year. When abundances were converted to percentage compositions, this pattern of seriation broke down, demonstrating that changes in abundance and not percentage composition were responsible for the seriation. As with the number and abundance of species, changes in composition over the 26 years were not related to any of the physico-chemical/climatic factors tested. Species composition changed monthly in a pronounced cyclical manner throughout the year, due to statistically different time-staggered changes in the abundance of each species. This cyclicity was related most strongly to salinity.

Metagenomic Insights Into the Microbial Community and Nutrient Cycling in the Western Subarctic Pacific Ocean.

PubMed

Li, Yingdong; Jing, Hongmei; Xia, Xiaomin; Cheung, Shunyan; Suzuki, Koji; Liu, Hongbin

2018-01-01

The composition and metabolic functions of prokaryotic communities in the western subarctic Pacific (WSP), where strong mixing of waters from the Sea of Okhotsk and the East Kamchatka Current result in transfer to the Oyashio Current, were investigated using a shotgun metagenome sequencing approach. Functional metabolic genes related to nutrient cycling of nitrogen, sulfur, carbohydrates, iron and amino acids were differently distributed between the surface and deep waters of the WSP. Genes related to nitrogen metabolism were mainly found in deep waters, where Thaumarchaeaota, Sphingomonadales , and Pseudomonadales were closely associated and performing important roles in ammonia oxidation, assimilatory nitrate reduction, and dissimilatory nitrate reduction processes, respectively. In addition, orders affiliated to Spingobacteria and Alphaproteobacteria were crucial for sulfate reduction and abundant at 3000 m, whereas orders affiliated to Gammaproteobacteria , which harbored the most sulfate reduction genes, were abundant at 1000 m. Additionally, when compared with the East Kamchatka Current, the prokaryotes in the Oyashio Current were likely to consume more energy for synthesizing cellular components. Also, genes encoding iron transport and siderophore biosynthesis proteins were in low abundance, indicating that the iron was not a limiting factor in the Oyashio current. In contrast, in the East Kamchatka Current, prokaryotes were more likely to directly utilize the amino acids and absorb iron from the environment. Overall, our data indicated that the transformation from the East Kamchatka Current to the Oyashio Current reshapes not only the composition of microbial community, but also the function of the metabolic processes. These results extended our knowledge of the microbial composition and potential metabolism in the WSP.

Metagenomic Insights Into the Microbial Community and Nutrient Cycling in the Western Subarctic Pacific Ocean

PubMed Central

Li, Yingdong; Jing, Hongmei; Xia, Xiaomin; Cheung, Shunyan; Suzuki, Koji; Liu, Hongbin

2018-01-01

The composition and metabolic functions of prokaryotic communities in the western subarctic Pacific (WSP), where strong mixing of waters from the Sea of Okhotsk and the East Kamchatka Current result in transfer to the Oyashio Current, were investigated using a shotgun metagenome sequencing approach. Functional metabolic genes related to nutrient cycling of nitrogen, sulfur, carbohydrates, iron and amino acids were differently distributed between the surface and deep waters of the WSP. Genes related to nitrogen metabolism were mainly found in deep waters, where Thaumarchaeaota, Sphingomonadales, and Pseudomonadales were closely associated and performing important roles in ammonia oxidation, assimilatory nitrate reduction, and dissimilatory nitrate reduction processes, respectively. In addition, orders affiliated to Spingobacteria and Alphaproteobacteria were crucial for sulfate reduction and abundant at 3000 m, whereas orders affiliated to Gammaproteobacteria, which harbored the most sulfate reduction genes, were abundant at 1000 m. Additionally, when compared with the East Kamchatka Current, the prokaryotes in the Oyashio Current were likely to consume more energy for synthesizing cellular components. Also, genes encoding iron transport and siderophore biosynthesis proteins were in low abundance, indicating that the iron was not a limiting factor in the Oyashio current. In contrast, in the East Kamchatka Current, prokaryotes were more likely to directly utilize the amino acids and absorb iron from the environment. Overall, our data indicated that the transformation from the East Kamchatka Current to the Oyashio Current reshapes not only the composition of microbial community, but also the function of the metabolic processes. These results extended our knowledge of the microbial composition and potential metabolism in the WSP. PMID:29670596

Chemistry of Rocks and Soils in Gusev Crater from the Alpha Particle X-ray Spectrometer

NASA Technical Reports Server (NTRS)

Gellert, R.; Rieder, R.; Anderson, R. C.; Brueckner, J.; Clark, B. C.; Dreibus, G.; Economou, T.; Klingelhoefer, G.; Lugmair, G. W.; Ming, D. W.

2005-01-01

The alpha particle x-ray spectrometer on the Spirit rover determined major and minor elements of soils and rocks in Gusev crater in order to unravel the crustal evolution of planet Mars. The composition of soils is similar to those at previous landing sites, as a result of global mixing and distribution by dust storms. Rocks (fresh surfaces exposed by the rock abrasion tool) resemble volcanic rocks of primitive basaltic composition with low intrinsic potassium contents. High abundance of bromine (up to 170 parts per million) in rocks may indicate the alteration of surfaces formed during a past period of aqueous activity in Gusev crater.

Large-Scale Ichthyoplankton and Water Mass Distribution along the South Brazil Shelf

PubMed Central

de Macedo-Soares, Luis Carlos Pinto; Garcia, Carlos Alberto Eiras; Freire, Andrea Santarosa; Muelbert, José Henrique

2014-01-01

Ichthyoplankton is an essential component of pelagic ecosystems, and environmental factors play an important role in determining its distribution. We have investigated simultaneous latitudinal and cross-shelf gradients in ichthyoplankton abundance to test the hypothesis that the large-scale distribution of fish larvae in the South Brazil Shelf is associated with water mass composition. Vertical plankton tows were collected between 21°27′ and 34°51′S at 107 stations, in austral late spring and early summer seasons. Samples were taken with a conical-cylindrical plankton net from the depth of chlorophyll maxima to the surface in deep stations, or from 10 m from the bottom to the surface in shallow waters. Salinity and temperature were obtained with a CTD/rosette system, which provided seawater for chlorophyll-a and nutrient concentrations. The influence of water mass on larval fish species was studied using Indicator Species Analysis, whereas environmental effects on the distribution of larval fish species were analyzed by Distance-based Redundancy Analysis. Larval fish species were associated with specific water masses: in the north, Sardinella brasiliensis was found in Shelf Water; whereas in the south, Engraulis anchoita inhabited the Plata Plume Water. At the slope, Tropical Water was characterized by the bristlemouth Cyclothone acclinidens. The concurrent analysis showed the importance of both cross-shelf and latitudinal gradients on the large-scale distribution of larval fish species. Our findings reveal that ichthyoplankton composition and large-scale spatial distribution are determined by water mass composition in both latitudinal and cross-shelf gradients. PMID:24614798

Large-scale ichthyoplankton and water mass distribution along the South Brazil Shelf.

PubMed

de Macedo-Soares, Luis Carlos Pinto; Garcia, Carlos Alberto Eiras; Freire, Andrea Santarosa; Muelbert, José Henrique

2014-01-01

Ichthyoplankton is an essential component of pelagic ecosystems, and environmental factors play an important role in determining its distribution. We have investigated simultaneous latitudinal and cross-shelf gradients in ichthyoplankton abundance to test the hypothesis that the large-scale distribution of fish larvae in the South Brazil Shelf is associated with water mass composition. Vertical plankton tows were collected between 21°27' and 34°51'S at 107 stations, in austral late spring and early summer seasons. Samples were taken with a conical-cylindrical plankton net from the depth of chlorophyll maxima to the surface in deep stations, or from 10 m from the bottom to the surface in shallow waters. Salinity and temperature were obtained with a CTD/rosette system, which provided seawater for chlorophyll-a and nutrient concentrations. The influence of water mass on larval fish species was studied using Indicator Species Analysis, whereas environmental effects on the distribution of larval fish species were analyzed by Distance-based Redundancy Analysis. Larval fish species were associated with specific water masses: in the north, Sardinella brasiliensis was found in Shelf Water; whereas in the south, Engraulis anchoita inhabited the Plata Plume Water. At the slope, Tropical Water was characterized by the bristlemouth Cyclothone acclinidens. The concurrent analysis showed the importance of both cross-shelf and latitudinal gradients on the large-scale distribution of larval fish species. Our findings reveal that ichthyoplankton composition and large-scale spatial distribution are determined by water mass composition in both latitudinal and cross-shelf gradients.

Delta-associated molluscan life and death assemblages in the northern Adriatic Sea: Implications for paleoecology, regional diversity and conservation.

PubMed

Weber, Kristina; Zuschin, Martin

2013-01-15

Life-death (LD) studies of shelly macrofauna are important to evaluate how well a fossil assemblage can reflect the original living community, but can also serve as a proxy for recent ecological shifts in marine habitats and in practice this has to be distinguished using taphonomic preservation pattern and estimates of time-averaging. It remains to be rigorously evaluated, however, how to distinguish between sources of LD disagreement. In addition, death assemblages (DAs) also preserve important information on regional diversity which is not available from single censuses of the life assemblages (LAs). The northern Adriatic Sea is an ecosystem under anthropogenic pressure, and we studied the distribution and abundance of living and dead bivalve and gastropod species in the physically stressful environments (tidal flat and shallow sublittoral soft bottoms) associated with the delta of the Isonzo River (Gulf of Trieste). Specifically we evaluated the fidelity of richness, evenness, abundance, habitat discrimination and beta diversity. A total of 10,740 molluscs from fifteen tidal flat and fourteen sublittoral sites were analyzed for species composition and distribution of living and dead molluscs. Of 78 recorded species, only eleven were numerically abundant. There were many more dead than living individuals and rarefied species richness in the DA was higher at all spatial scales, but the differences are lower in habitats and in the region than at individual stations. Evenness was always higher in death assemblages, and probably due to temporally more variable LAs the differences are stronger in the sublittoral habitats. Distinct assemblages characterized intertidal and sublittoral habitats, and the distribution and abundance of empty shells generally corresponded to that of the living species. Death assemblages have lower beta diversity than life assemblages, but empty shells capture compositional differences between habitats to a higher degree than living shells. More samples would be necessary to account for the diversity of living molluscs in the study area, which is, however, well recorded in the death assemblages. There is no indication of a major environmental change over the last decades in this area, but due to the long history of anthropogenic pressure here, such a potential impact might be preserved in historical layers of the deeper sedimentary record.

Predicting the mineral composition of dust aerosols: Insights from elemental composition measured at the Izaña Observatory

NASA Astrophysics Data System (ADS)

Pérez García-Pando, Carlos; Miller, Ron L.; Perlwitz, Jan P.; Rodríguez, Sergio; Prospero, Joseph M.

2016-10-01

Regional variations of dust mineral composition are fundamental to climate impacts but generally neglected in climate models. A challenge for models is that atlases of soil composition are derived from measurements following wet sieving, which destroys the aggregates potentially emitted from the soil. Aggregates are crucial to simulating the observed size distribution of emitted soil particles. We use an extension of brittle fragmentation theory in a global dust model to account for these aggregates. Our method reproduces the size-resolved dust concentration along with the approximately size-invariant fractional abundance of elements like Fe and Al in the decade-long aerosol record from the Izaña Observatory, off the coast of West Africa. By distinguishing between Fe in structural and free forms, we can attribute improved model behavior to aggregation of Fe and Al-rich clay particles. We also demonstrate the importance of size-resolved measurements along with elemental composition analysis to constrain models.

Distribution patterns of the peracarid crustaceans associated with the alga Corallina elongata along the intertidal rocky shores of the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Izquierdo, D.; Guerra-García, J. M.

2011-06-01

Spatial patterns of intertidal peracarids, associated with the alga Corallina elongata, were studied along the whole Iberian Peninsula. A total of 28,215 specimens were collected, comprising 78 different species (57 amphipods, 16 isopods, 4 tanaids and 1 cumacean), most of them with Atlantic-Mediterranean distribution (60%) and only 9% of Mediterranean endemics. Gammarids were dominant in abundance and number of species, representing more than 70% of the total peracarids. The most common species collected during the present study were the caprellid Caprella penantis, the gammarids Hyale schmidti, Hyale stebbingi, Jassa cf. falcata and Stenothoe monoculoides, the isopod Ischyromene lacazei and the tanaid Tanais dulongii. Caprellids and tanaidaceans presented their highest populations in the stations of the Strait of Gibraltar, whereas isopods were more abundant in Atlantic stations. Univariate analyses did not reflected differences in number of species, abundance and Shannon-Weaver diversity between Mediterranean and Atlantic. However, cluster analyses and Whittaker index, as measure of ß-diversity, showed a different species composition between Mediterranean and Atlantic and a replacement of species along the coast, especially at the Strait of Gibraltar. The turnover mainly affected species of the same genera, probably related with sympatric speciation. CCA and BIO-ENV analyses showed high correlations between environmental measures (especially conductivity) and peracarid distribution. Mediterranean species tolerated higher values of conductivity and temperature, while Atlantic species were associated with stations characterized by higher oxygen concentrations.

Diversity and Distribution of Freshwater Aerobic Anoxygenic Phototrophic Bacteria across a Wide Latitudinal Gradient

PubMed Central

Ferrera, Isabel; Sarmento, Hugo; Priscu, John C.; Chiuchiolo, Amy; González, José M.; Grossart, Hans-Peter

2017-01-01

Aerobic anoxygenic phototrophs (AAPs) have been shown to exist in numerous marine and brackish environments where they are hypothesized to play important ecological roles. Despite their potential significance, the study of freshwater AAPs is in its infancy and limited to local investigations. Here, we explore the occurrence, diversity and distribution of AAPs in lakes covering a wide latitudinal gradient: Mongolian and German lakes located in temperate regions of Eurasia, tropical Great East African lakes, and polar permanently ice-covered Antarctic lakes. Our results show a widespread distribution of AAPs in lakes with contrasting environmental conditions and confirm that this group is composed of different members of the Alpha- and Betaproteobacteria. While latitude does not seem to strongly influence AAP abundance, clear patterns of community structure and composition along geographic regions were observed as indicated by a strong macro-geographical signal in the taxonomical composition of AAPs. Overall, our results suggest that the distribution patterns of freshwater AAPs are likely driven by a combination of small-scale environmental conditions (specific of each lake and region) and large-scale geographic factors (climatic regions across a latitudinal gradient). PMID:28275369

Phytoplankton assemblages in high-elevation lakes in the northern Cascade Mountains, Washington State, USA

USGS Publications Warehouse

Larson, Gary L.; McIntire, C.D.; Truitt, R.E.; Liss, W.J.; Hoffman, Robert L.; Deimling, E.; Lomnicky, G.A.

1998-01-01

Phytoplankton assemblages in high-elevation lakes of North Cascades National Park Service Complex were studied during the open-water period in 1989. Collectively, 93 taxa were identified in 55 samples from 51 lakes. Based on cell densities, cyanobacteria had the highest relative abundance (36.7 %), followed by chlorophytes (29.8 %), and chrysophytes (19.6 %). Aphanocapsa delicatissima had the highest proportional abundance (14.0 %). Only 15.1 % percent of the taxa occurred in more than 20 samples. Phytoplankton cell densities increased following a gradient of increasing lake-water temperature, alkalinity, and concentration of total Kjeldahl-N with decreasing lake elevation. Chrysophytes and cyanobacteria were quantitatively (relative abundance) the most important taxa in alpine and subalpine lakes, whereas cyanobacteria had the highest relative abundances in high-forest and low-forest lakes. Chlorophytes had their highest relative abundance in high-forest lakes. Although low in relative abundance, diatoms and dinoflagellates were most abundant in alpine lakes. An ordination by correspondence analysis indicated that most alpine, subalpine, and high-forest lakes had similar floras. Although a few subalpine lakes exhibited deviations from this pattern, the main differences in phytoplankton composition were found in a group of low-forest and high-forest lakes. Canonical correspondence analysis (CCA) provided evidence that the distribution of samples and taxa in ordination space was correlated with a gradient of decreasing lake elevation and increasing water temperature, alkalinity, and concentration of nitrogen. When CCA was used to examine relationships among phytoplankton taxa and vegetation zones, a continuous distribution of taxa was found from the low-forest zone to the subalpine zone, with a large number of taxa occurring primarily in the subalpine and high-forest zones. Three phytoplankton taxa occurred primarily in alpine lakes, whereas five taxa co-occurred in alpine, subalpine, and high forest zones. Collectively, lake elevation and associated changes in water quality and concentrations of nutrients, especially nitrogen, appeared to be the primary physical and chemical factors influencing the taxonomic structures of phytoplankton assemblages.

Metagenomic profiling of ARGs in airborne particulate matters during a severe smog event.

PubMed

Hu, Jialin; Zhao, Fuzheng; Zhang, Xu-Xiang; Li, Kan; Li, Chaoran; Ye, Lin; Li, Mei

2018-02-15

Information is currently limited regarding the distribution of antibiotic resistance genes (ARGs) in smog and their correlations with airborne bacteria. This study characterized the diversity and abundance of ARGs in the particulate matters (PMs) of severe smog based on publicly available metagenomic data, and revealed the occurrence of 205 airborne ARG subtypes, including 31 dominant ones encoding resistance to 11 antibiotic types. Among the detectable ARGs, tetracycline, β-lactam and aminoglycoside resistance genes had the highest abundance, and smog and soil had similar composition characteristics of ARGs. During the smog event, the total abundance of airborne ARGs ranged from 4.90 to 38.07ppm in PM 2.5 samples, and from 7.61 to 38.49ppm in PM 10 samples, which were 1.6-7.7 times and 2.1-5.1 times of those in the non-smog day, respectively. The airborne ARGs showed complicated co-occurrence patterns, which were heavily influenced by the interaction of bacterial community, and physicochemical and meteorological factors. Lactobacillus and sulfonamide resistance gene sul1 were determined as keystones in the co-occurrence network of microbial taxa and airborne ARGs. The results may help to understand the distribution patterns of ARGs in smog for the potential health risk evaluation. Copyright © 2017 Elsevier B.V. All rights reserved.

The distribution of submersed aquatic vegetation and water lettuce in the fresh and oligohaline tidal Potomac River, 2007

USGS Publications Warehouse

Campbell, Sarah Hunter; Rybicki, Nancy B.; Schenk, Edward R.

2015-01-01

Surveys documenting the composition of species of submersed aquatic vegetation (SAV) have been conducted in the Potomac River for decades. These surveys can help managers assess the proportion of native and exotic plants in the river or can be used to determine relationships between native and exotic plants, environmental conditions, and wildlife. SAV coverage increased from 2005 to 2007 throughout the fresh and oligohaline study area. The 2007 survey documented here determined that eleven species of SAV were present. The abundance of the exotic species Hydrilla verticillata (hydrilla) was relatively low, and species diversity was relatively high compared to previous years. The survey also revealed a new population of the invasive, floating aquatic plant Pistia stratiotes (water lettuce). In 2007, water lettuce, the latest exotic aquatic plant to be found in the fresh to oligohaline portion of the Potomac River, was most abundant in Mattawoman Creek, Charles County, Maryland. However, it was not observed in the fresh to oligohaline portion of the Potomac River in the summer of 2008. An understanding of the distribution of SAV species and factors governing the abundance of native and invasive aquatic species is enhanced by long-term surveys.

Variation in size frequency distribution of coral populations under different fishing pressures in two contrasting locations in the Indian Ocean.

PubMed

Grimsditch, G; Pisapia, C; Huck, M; Karisa, J; Obura, D; Sweet, M

2017-10-01

This study aimed to assess how the size-frequency distributions of coral genera varied between reefs under different fishing pressures in two contrasting Indian Ocean locations (the Maldives and East Africa). Using generalized linear mixed models, we were able to demonstrate that complex interactions occurred between coral genera, coral size class and fishing pressure. In both locations, we found Acropora coral species to be more abundant in non-fished compared to fished sites (a pattern which was consistent for nearly all the assessed size classes). Coral genera classified as 'stress tolerant' showed a contrasting pattern i.e. were higher in abundance in fished compared to non-fished sites. Site specific variations were also observed. For example, Maldivian reefs exhibited a significantly higher abundance in all size classes of 'competitive' corals compared to East Africa. This possibly indicates that East African reefs have already been subjected to higher levels of stress and are therefore less suitable environments for 'competitive' corals. This study also highlights the potential structure and composition of reefs under future degradation scenarios, for example with a loss of Acropora corals and an increase in dominance of 'stress tolerant' and 'generalist' coral genera. Copyright © 2017. Published by Elsevier Ltd.

Species composition, larval habitats, seasonal occurrence and distribution of potential malaria vectors and associated species of Anopheles (Diptera: Culicidae) from the Republic of Korea

PubMed Central

2010-01-01

Background Larval mosquito habitats of potential malaria vectors and related species of Anopheles from three provinces (Gyeonggi, Gyeongsangbuk, Chungcheongbuk Provinces) of the Republic of Korea were surveyed in 2007. This study aimed to determine the species composition, seasonal occurrence and distributions of Anopheles mosquitoes. Satellite derived normalized difference vegetation index data (NDVI) was also used to study the seasonal abundance patterns of Anopheles mosquitoes. Methods Mosquito larvae from various habitats were collected using a standard larval dipper or a white plastic larval tray, placed in plastic bags, and were preserved in 100% ethyl alcohol for species identification by PCR and DNA sequencing. The habitats in the monthly larval surveys included artificial containers, ground depressions, irrigation ditches, drainage ditches, ground pools, ponds, rice paddies, stream margins, inlets and pools, swamps, and uncultivated fields. All field-collected specimens were identified to species, and relationships among habitats and locations based on species composition were determined using cluster statistical analysis. Results In about 10,000 specimens collected, eight species of Anopheles belonging to three groups were identified: Hyrcanus Group - Anopheles sinensis, Anopheles kleini, Anopheles belenrae, Anopheles pullus, Anopheles lesteri, Anopheles sineroides; Barbirostris Group - Anopheles koreicus; and Lindesayi Group - Anopheles lindesayi japonicus. Only An. sinensis was collected from all habitats groups, while An. kleini, An. pullus and An. sineroides were sampled from all, except artificial containers. The highest number of Anopheles larvae was found in the rice paddies (34.8%), followed by irrigation ditches (23.4%), ponds (17.0%), and stream margins, inlets and pools (12.0%). Anopheles sinensis was the dominant species, followed by An. kleini, An. pullus and An. sineroides. The monthly abundance data of the Anopheles species from three locations (Munsan, Jinbo and Hayang) were compared against NDVI and NDVI anomalies. Conclusion The species composition of Anopheles larvae varied in different habitats at various locations. Anopheles populations fluctuated with the seasonal dynamics of vegetation for 2007. Multi-year data of mosquito collections are required to provide a better characterization of the abundance of these insects from year to year, which can potentially provide predictive capability of their population density based on remotely sensed ecological measurements. PMID:20163728

Contrasting outcomes of species- and community-level analyses of the temporal consistency of functional composition.

PubMed

Katabuchi, Masatoshi; Wright, S Joseph; Swenson, Nathan G; Feeley, Kenneth J; Condit, Richard; Hubbell, Stephen P; Davies, Stuart J

2017-09-01

Multiple anthropogenic drivers affect every natural community, and there is broad interest in using functional traits to understand and predict the consequences for future biodiversity. There is, however, no consensus regarding the choice of analytical methods. We contrast species- and community-level analyses of change in the functional composition for four traits related to drought tolerance using three decades of repeat censuses of trees in the 50-ha Forest Dynamics Plot on Barro Colorado Island, Panama. Community trait distributions shifted significantly through time, which may indicate a shift toward more drought tolerant species. However, at the species level, changes in abundance were unrelated to trait values. To reconcile these seemingly contrasting results, we evaluated species-specific contributions to the directional shifts observed at the community level. Abundance changes of just one to six of 312 species were responsible for the community-level shifts observed for each trait. Our results demonstrate that directional changes in community-level functional composition can result from idiosyncratic change in a few species rather than widespread community-wide changes associated with functional traits. Future analyses of directional change in natural communities should combine community-, species-, and possibly individual-level analyses to uncover relationships with function that can improve understanding and enable prediction. © 2017 by the Ecological Society of America.

POROSITY AND BAND-STRENGTH MEASUREMENTS OF MULTI-PHASE COMPOSITE ICES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bossa, Jean-Baptiste; Fransen, Coen; Cazaux, Stéphanie

2015-11-20

We use experimental mid-infrared optical constants and extended effective medium approximations to determine the porosity and the band strengths of multi-phase composite ices grown at 30 K. A set of porous H{sub 2}O:CH{sub 4} ices are taken as a prototypical example. As a benchmark and proof of concept, the stoichiometry of the ice constituents is retreived with good accuracy from the refractive indices and the extinction coefficients of the reference binary ice mixtures with known compositions. Accurate band strengths are then calculated from experimental mid-infrared spectra of complex ices. We notice that the presence of pores has only a smallmore » effect on the overall band strengths, whereas a water dilution can considerably alter them. Different levels of porosity are observed depending on the abundance of methane used as a gas contaminant premixed with water prior to background deposition. The absorption profiles are also found to vary with deposition rate. To explain this, we use Monte Carlo simulations and we observe that the deposition rate strongly affects the pore size distribution as well as the ice morphology through reorganization processes. Extrapolated to genuine interstellar ices, the methodology presented in this paper can be used to evaluate the porosity and to quantify the relative abundances from observational data.« less

Chaetognatha in the Bahía Magdalena lagoon complex, Baja California Sur, México: species composition and assemblages.

PubMed

Cota Meza, M S

2011-07-01

The chaetognaths from 187 zooplankton samples collected from the Bahia Magdalena lagoon complex, Baja California Sur, Mexico during March, June, July, August, September, November, and December 1982 were studied. Twelve species belonging to two genera were identified. Sagitta euneritica and S. enflata were the most abundant and most frequent species with maximum abundance in July (40,000 org/100 m(3) and 6100 org/100 m(3) respectively). Sagitta pacifica, S. regularis and S. pseudoserratodentata were stenothermic (21 to 25 degrees C), whereas the rest of the species were eurythermic (15.5 to 29.5 degrees C). Sagitta euneritica contributed considerably to the zooplanktonic biomass, increasing the density in particular in BahíaAlmejas. The analysis of the species assemblages (Morisita index) showed that S. pacifica and S. regularis interact more frequently in August when there is a change of the water masses that converge in this zone during summer, when the California Countercurrent predominates. The composition of taxa during winter is characterized by the dominance of S. euneritica. Entering the warm period, an abrupt change occurs in taxa composition of the three zones studied: channels, Bahía Magdalena, and BahíaAlmejas. The amplitude and distribution of S. peruviana was influenced possibility by the oceanographic conditions of ENSO 1982.

Arbuscular mycorrhizal fungal communities along a pedo-hydrological gradient in a Central Amazonian terra firme forest.

PubMed

de Oliveira Freitas, Rejane; Buscardo, Erika; Nagy, Laszlo; dos Santos Maciel, Alex Bruno; Carrenho, Rosilaine; Luizão, Regina C C

2014-01-01

Little attention has been paid to plant mutualistic interactions in the Amazon rainforest, and the general pattern of occurrence and diversity of arbuscular mycorrhizal fungi (AMF) in these ecosystems is largely unknown. This study investigated AMF communities through their spores in soil in a 'terra firme forest' in Central Amazonia. The contribution played by abiotic factors and plant host species identity in regulating the composition, abundance and diversity of such communities along a topographic gradient with different soils and hydrology was also evaluated. Forty-one spore morphotypes were observed with species belonging to the genera Glomus and Acaulospora, representing 44 % of the total taxa. Soil texture and moisture, together with host identity, were predominant factors responsible for shaping AMF communities along the pedo-hydrological gradient. However, the variability within AMF communities was largely associated with shifts in the relative abundance of spores rather than changes in species composition, confirming that common AMF species are widely distributed in plant communities and all plants recruited into the forest are likely to be exposed to the dominant sporulating AMF species.

Discovery of calcium in Mercury's atmosphere.

PubMed

Bida, T A; Killen, R M; Morgan, T H

2000-03-09

The composition and evolutionary history of Mercury's crust are not well determined. The planet as a whole has been predicted to have a refractory, anhydrous composition: rich in Ca, Al, Mg and Fe, but poor in Na, K, OH, and S. Its atmosphere is believed to be derived in large part from the surface materials. A combination of effects that include impact vaporization (from infalling material), volatile evaporation, photon-stimulated desorption and sputtering releases material from the surface to form the atmosphere. Sodium and potassium have already been observed in Mercury's atmosphere, with abundances that require a volatile-rich crust. The sodium probably results from photon-stimulated desorption, and has a temperature of 1,500 K (ref. 10). Here we report the discovery of calcium in the atmosphere near Mercury's poles. The column density is very low and the temperature is apparently very high (12,000 K). The localized distribution and high temperature, if confirmed, suggest that the atmospheric calcium may arise from surface sputtering by ions, which enter Mercury's auroral zone. The low abundance of atmospheric Ca may indicate that the regolith is rarefied in calcium.

Re-Os isotopic systematics of primitive lavas from the Lassen region of the Cascade arc, California

USGS Publications Warehouse

Borg, L.E.; Brandon, A.D.; Clynne, M.A.; Walker, R.J.

2000-01-01

Rhenium-osmium isotopic systematics of primitive calc-alkaline lavas from the Lassen region appear to be controlled by mantle wedge processes. Lavas with a large proportion of slab component have relatively low Re and Os abundances, and have radiogenic Os and mid ocean ridge basalt-like Sr and Pb isotopic compositions. Lavas with a small proportion of slab component have higher Re and Os elemental abundances and display mantle-like Os, Sr, Nd, and Pb isotopic compositions. Assimilation with fractional crystallization can only generate the Re-Os systematics of the Lassen lavas from a common parent if the distribution coefficient for Re in sulfide is ~40-1100 times higher than most published estimates and if most incompatible element abundances decrease during differentiation. High Re/Os ratios in mid ocean ridge basalts makes subducted oceanic crust a potential source of radiogenic Os in volcanic arcs. The slab beneath the southernmost Cascades is estimated to have 187Os/188Os ratios as high as 1.4. Mixing between a slab component and mantle wedge peridotite can generate the Os isotopic systematics of the Lassen lavas provided the slab component has a Sr/Os ratio of ~7.5X105 and Os abundances that are 100-600 times higher than mid ocean ridge basalts. For this model to be correct, Os must be readily mobilized and concentrated in the slab component, perhaps as a result of high water and HCl fugacities in this subduction environment. Another possible mechanism to account for the correlation between the magnitude of the subduction geochemical signature and Os isotopic composition involves increasing the stability of an Os-bearing phase in mantle wedge peridotites as a result of fluxing with the slab component. Melting of such a source could yield low Os magmas that are more susceptible to crustal contamination, and hence have more radiogenic Os isotopic compositions, than magmas derived from sources with a smaller contribution from the slab. Thus, the addition of the slab component to the mantle wedge appears to result in either the direct or indirect addition of radiogenic Os to arc magmas. (C) 2000 Elsevier Science B.V. All rights reserved.

Elemental composition of solar energetic particles

NASA Technical Reports Server (NTRS)

Cook, W. R.; Stone, E. C.; Vogt, R. E.

1984-01-01

The Low Energy Telescopes on the Voyager spacecraft have been used to measure the elemental composition (Z = 2-28) and energy spectra (5-15 MeV per nucleon) of solar energetic particles (SEPs) in seven large flare events. Four flare events were selected which have SEP abundance ratios approximately independent of energy per nucleon. For these selected flare events, SEP composition results may be described by an average composition plus a systematic flare-to-flare deviation about the average. The four-flare average SEP composition is systematically different from the solar composition determined by photospheric spectroscopy. These systematic composition differences are apparently not due to SEP propagation or acceleration effects. In contrast, the four-flare average SEP composition is in agreement with measured solar wind abundances and with a number of recent spectroscopic coronal abundance measurements. These findings suggest that SEPs originate in the corona, and that both SEPs and the solar wind sample a coronal composition which is significantly and persistently different from that measured for the photosphere.

Body size and the division of niche space: food and predation differentially shape the distribution of Serengeti grazers.

PubMed

Hopcraft, J Grant C; Anderson, T Michael; Pérez-Vila, Saleta; Mayemba, Emilian; Olff, Han

2012-01-01

1. Theory predicts that small grazers are regulated by the digestive quality of grass, while large grazers extract sufficient nutrients from low-quality forage and are regulated by its abundance instead. In addition, predation potentially affects populations of small grazers more than large grazers, because predators have difficulty capturing and handling large prey. 2. We analyse the spatial distribution of five grazer species of different body size in relation to gradients of food availability and predation risk. Specifically, we investigate how the quality of grass, the abundance of grass biomass and the associated risks of predation affect the habitat use of small, intermediate and large savanna grazers at a landscape level. 3. Resource selection functions of five mammalian grazer species surveyed over a 21-year period in Serengeti are calculated using logistic regressions. Variables included in the analyses are grass nitrogen, rainfall, topographic wetness index, woody cover, drainage lines, landscape curvature, water and human habitation. Structural equation modelling (SEM) is used to aggregate predictor variables into 'composites' representing food quality, food abundance and predation risk. Subsequently, SEM is used to investigate species' habitat use, defined as their recurrence in 5 × 5 km cells across repeated censuses. 4. The distribution of small grazers is constrained by predation and food quality, whereas the distribution of large grazers is relatively unconstrained. The distribution of the largest grazer (African buffalo) is primarily associated with forage abundance but not predation risk, while the distributions of the smallest grazers (Thomson's gazelle and Grant's gazelle) are associated with high grass quality and negatively with the risk of predation. The distributions of intermediate sized grazers (Coke's hartebeest and topi) suggest they optimize access to grass biomass of sufficient quality in relatively predator-safe areas. 5. The results illustrate how top-down (vegetation-mediated predation risk) and bottom-up factors (biomass and nutrient content of vegetation) predictably contribute to the division of niche space for herbivores that vary in body size. Furthermore, diverse grazing assemblages are composed of herbivores of many body sizes (rather than similar body sizes), because these herbivores best exploit the resources of different habitat types. © 2011 The Authors. Journal of Animal Ecology © 2011 British Ecological Society.

The Genesis Mission: Solar Wind Conditions, and Implications for the FIP Fractionation of the Solar Wind.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reisenfeld, D. B.; Wiens, R. C.; Barraclough, B. L.

2005-01-01

The NASA Genesis mission collected solar wind on ultrapure materials between November 30, 2001 and April 1, 2004. The samples were returned to Earth September 8, 2004. Despite the hard landing that resulted from a failure of the avionics to deploy the parachute, many samples were returned in a condition that will permit analyses. Sample analyses of these samples should give a far better understanding of the solar elemental and isotopic composition (Burnett et al. 2003). Further, the photospheric composition is thought to be representative of the solar nebula, so that the Genesis mission will provide a new baseline formore » the average solar nebula composition with which to compare present-day compositions of planets, meteorites, and asteroids. Sample analysis is currently underway. The Genesis samples must be placed in the context of the solar and solar wind conditions under which they were collected. Solar wind is fractionated from the photosphere by the forces that accelerate the ions off of the Sun. This fractionation appears to be ordered by the first ionization potential (FIP) of the elements, with the tendency for low-FIP elements to be over-abundant in the solar wind relative to the photosphere, and high-FIP elements to be under-abundant (e.g. Geiss, 1982; von Steiger et al., 2000). In addition, the extent of elemental fractionation differs across different solarwind regimes. Therefore, Genesis collected solar wind samples sorted into three regimes: 'fast wind' or 'coronal hole' (CH), 'slow wind' or 'interstream' (IS), and 'coronal mass ejection' (CME). To carry this out, plasma ion and electron spectrometers (Barraclough et al., 2003) continuously monitored the solar wind proton density, velocity, temperature, the alpha/proton ratio, and angular distribution of suprathermal electrons, and those parameters were in turn used in a rule-based algorithm that assigned the most probable solar wind regime (Neugebauer et al., 2003). At any given time, only one of three regime-specific collectors (CH, IS, or CME) was exposed to the solar wind. Here we report on the regime-specific solar wind conditions from in-situ instruments over the course of the collection period. Further, we use composition data from the SWICS (Solar Wind Ion Composition Spectrometer) instrument on ACE (McComas et al., 1998) to examine the FIP fractionation between solar wind regimes, and make a preliminary comparison of these to the FIP analysis of Ulysses/SWICS composition data (von Steiger et al. 2000). Our elemental fractionation study includes a reevaluation of the Ulysses FIP analysis in light of newly reported photospheric abundance data (Asplund, Grevesse & Sauval, 2005). The new abundance data indicate a metallicity (Z/X) for the Sun almost a factor of two lower than that reported in the widely used compilation of Anders & Grevesse (1989). The new photospheric abundances suggest a lower degree of solar wind fractionation than previously reported by von Steiger et al. (2000) for the first Ulysses polar orbit (1991-1998).« less

Microbial Community Stratification Linked to Utilization of Carbohydrates and Phosphorus Limitation in a Boreal Peatland at Marcell Experimental Forest, Minnesota, USA

PubMed Central

Tfaily, Malak M.; Steinweg, J. Megan; Chanton, Patrick; Esson, Kaitlin; Yang, Zamin K.; Chanton, Jeffrey P.; Cooper, William; Schadt, Christopher W.

2014-01-01

This study investigated the abundance, distribution, and composition of microbial communities at the watershed scale in a boreal peatland within the Marcell Experimental Forest (MEF), Minnesota, USA. Through a close coupling of next-generation sequencing, biogeochemistry, and advanced analytical chemistry, a biogeochemical hot spot was revealed in the mesotelm (30- to 50-cm depth) as a pronounced shift in microbial community composition in parallel with elevated peat decomposition. The relative abundance of Acidobacteria and the Syntrophobacteraceae, including known hydrocarbon-utilizing genera, was positively correlated with carbohydrate and organic acid content, showing a maximum in the mesotelm. The abundance of Archaea (primarily crenarchaeal groups 1.1c and 1.3) increased with depth, reaching up to 60% of total small-subunit (SSU) rRNA gene sequences in the deep peat below the 75-cm depth. Stable isotope geochemistry and potential rates of methane production paralleled vertical changes in methanogen community composition to indicate a predominance of acetoclastic methanogenesis mediated by the Methanosarcinales in the mesotelm, while hydrogen-utilizing methanogens predominated in the deeper catotelm. RNA-derived pyrosequence libraries corroborated DNA sequence data to indicate that the above-mentioned microbial groups are metabolically active in the mid-depth zone. Fungi showed a maximum in rRNA gene abundance above the 30-cm depth, which comprised only an average of 0.1% of total bacterial and archaeal rRNA gene abundance, indicating prokaryotic dominance. Ratios of C to P enzyme activities approached 0.5 at the acrotelm and catotelm, indicating phosphorus limitation. In contrast, P limitation pressure appeared to be relieved in the mesotelm, likely due to P solubilization by microbial production of organic acids and C-P lyases. Based on path analysis and the modeling of community spatial turnover, we hypothesize that P limitation outweighs N limitation at MEF, and microbial communities are structured by the dominant shrub, Chamaedaphne calyculata, which may act as a carbon source for major consumers in the peatland. PMID:24682300

HIP 13962 - The Possible Former Member of Binary System with Supernova

NASA Astrophysics Data System (ADS)

Yushchenko, V.; Yushchenko, A.; Gopka, V.; Shavrina, A.; Kovtyukh, V.; Hong, K. S.; Mkrtichian, D.; Thano, N. A.

2016-12-01

The runaway supergiant star HIP 13962 (spectral type G0Ia) was recently pointed as a possible former binary companion of young pulsar PSR J0826+2637. The spectra of HIP 13962 were obtained in Haute-Provence observatory (France), in Bohuynsan observatory (Korea), and also in NARIT (Thailand) with 1.9, 1.8, and 2.4 meter telescopes respectively. The spectra were obtained in 1995, 2003, 2005, 2014, and 2015. Significant variations of the spectrum are detected. The cores of strong lines show complicated structure, the brightness of the star is variable. The cycles of photometric variations have been changed. We analyzed the spectral observations and present the preliminary chemical composition for elements from iron to lead. The abundance pattern can not be fitted by solar system r- & s-process abundance distribution.

Surface Compositions of Red Giant Stars in Globular Clusters

NASA Astrophysics Data System (ADS)

Cheng, Eric; Lau, Marie; Smith, Graeme; Chen, Brian

2018-01-01

Globular clusters (GCs) are excellent “laboratories” to study the formation and evolution of our galaxy. In order to understand, more specifically, the chemical compositions and stellar evolution of the stars in GCs, we ask whether or not deep internal mixing occurs in red giants or if in fact the compositions come from the primordial interstellar medium or previous generations of stars. It has been discovered that as a star evolves up the red giant branch, the surface carbon abundance decreases, which is evidence of deep internal mixing. We questioned whether these processes also affect O or Na abundance as a star evolves. We collected measurement data of red giants from GCs out of academic journals and sorted the data into catalogs. Then, we plotted the catalogs into figures, comparing surface O and Na each with stellar luminosity. Statistical tests were ran to quantify the amount of correlation between the variables. Out of 27 GCs, we concluded that eight show a positive correlation between Na and luminosity, and two show a negative correlation between O and luminosity. Properties of GCs were compared to determine if chemical distribution in stars depends on GCs as the self-enrichment scenario suggests. We created histograms of sodium distribution to test for bimodality to examine if there are separate trends in each GC. In six GCs, two different sequences of red giants appear for Na versus luminosity, suggesting evidence that the depth of mixing may differ among each red giant in a GC. This study has provided new evidence that the changing chemical abundances on the surfaces of red giants can be due to stellar evolutionary effects and deep internal mixing, which may not necessarily depend on the GC and may differ in depth among each red giant. Through this study, we learn more about stellar evolution which will eventually help us understand the origins of our universe. Most of this work was carried out by high school students working under the auspices of the Science Internship Program (SIP) at UC Santa Cruz.

Species composition, seasonal occurrence, habitat preference and altitudinal distribution of malaria and other disease vectors in eastern Nepal.

PubMed

Dhimal, Meghnath; Ahrens, Bodo; Kuch, Ulrich

2014-11-28

It is increasingly recognized that climate change can alter the geographical distribution of vector-borne diseases (VBDs) with shifts of disease vectors to higher altitudes and latitudes. In particular, an increasing risk of malaria and dengue fever epidemics in tropical highlands and temperate regions has been predicted in different climate change scenarios. The aim of this paper is to expand the current knowledge on the seasonal occurrence and altitudinal distribution of malaria and other disease vectors in eastern Nepal. Adult mosquitoes resting indoors and outdoors were collected using CDC light trap and aspirators with the support of flash light. Mosquito larvae were collected using locally constructed dippers. We assessed the local residents' perceptions of the distribution and occurrence of mosquitoes using key informant interview techniques. Generalized linear models were fitted to assess the effect of season, resting site and topography on the abundance of malaria vectors. The known malaria vectors in Nepal, Anopheles fluviatilis, Anopheles annularis and Anopheles maculatus complex members were recorded from 70 to 1,820 m above sea level (asl). The vectors of chikungunya and dengue virus, Aedes aegypti and Aedes albopictus, the vector of lymphatic filariasis, Culex quinquefasciatus, and that of Japanese encephalitis, Culex tritaeniorhynchus, were found from 70 to 2,000 m asl in eastern Nepal. Larvae of Anopheles, Culex and Aedes species were recorded up to 2,310 m asl. Only season had a significant effect on the abundance of An. fluviatilis, season and resting site on the abundance of An. maculatus complex members, and season, resting site and topography on the abundance of An. annularis. The perceptions of people on mosquito occurrence are consistent with entomological findings. This study provides the first vertical distribution records of vector mosquitoes in eastern Nepal and suggests that the vectors of malaria and other diseases have already established populations in the highlands due to climatic and other environmental changes. As VBD control programmes have not been focused on the highlands of Nepal, these findings call for actions to start monitoring, surveillance and research on VBDs in these previously disease-free, densely populated and economically important regions.

Geostatistical Modeling of Sediment Abundance in a Heterogeneous Basalt Aquifer at the Idaho National Laboratory, Idaho

USGS Publications Warehouse

Welhan, John A.; Farabaugh, Renee L.; Merrick, Melissa J.; Anderson, Steven R.

2007-01-01

The spatial distribution of sediment in the eastern Snake River Plain aquifer was evaluated and modeled to improve the parameterization of hydraulic conductivity (K) for a subregional-scale ground-water flow model being developed by the U.S. Geological Survey. The aquifer is hosted within a layered series of permeable basalts within which intercalated beds of fine-grained sediment constitute local confining units. These sediments have K values as much as six orders of magnitude lower than the most permeable basalt, and previous flow-model calibrations have shown that hydraulic conductivity is sensitive to the proportion of intercalated sediment. Stratigraphic data in the form of sediment thicknesses from 333 boreholes in and around the Idaho National Laboratory were evaluated as grouped subsets of lithologic units (composite units) corresponding to their relative time-stratigraphic position. The results indicate that median sediment abundances of the stratigraphic units below the water table are statistically invariant (stationary) in a spatial sense and provide evidence of stationarity across geologic time, as well. Based on these results, the borehole data were kriged as two-dimensional spatial data sets representing the sediment content of the layers that discretize the ground-water flow model in the uppermost 300 feet of the aquifer. Multiple indicator kriging (mIK) was used to model the geographic distribution of median sediment abundance within each layer by defining the local cumulative frequency distribution (CFD) of sediment via indicator variograms defined at multiple thresholds. The mIK approach is superior to ordinary kriging because it provides a statistically best estimate of sediment abundance (the local median) drawn from the distribution of local borehole data, independent of any assumption of normality. A methodology is proposed for delineating and constraining the assignment of hydraulic conductivity zones for parameter estimation, based on the locally estimated CFDs and relative kriging uncertainty. A kriging-based methodology improves the spatial resolution of hydraulic property zones that can be considered during parameter estimation and should improve calibration performance and sensitivity by more accurately reflecting the nuances of sediment distribution within the aquifer.

New insights into the spatial variability of biofilm communities and potentially negative bacterial groups in hydraulic concrete structures.

PubMed

Cai, Wei; Li, Yi; Niu, Lihua; Zhang, Wenlong; Wang, Chao; Wang, Peifang; Meng, Fangang

2017-10-15

The composition and distribution characteristics of bacterial communities in biofilms attached to hydraulic concrete structure (HCS) surfaces were investigated for the first time in four reservoirs in the middle and lower reaches of the Yangtze River Basin using 16S rRNA Miseq sequencing. High microbial diversity was found in HCS biofilms, and notable differences were observed in different types of HCS. Proteobacteria, Cyanobacteria and Chloroflexi were the predominant phyla, with respective relative abundances of 35.3%, 25.4% and 13.0%. The three most abundant genera were Leptolyngbya, Anaerolineaceae and Polynucleobacter. The phyla Beta-proteobacteria and Firmicutes and genus Lyngbya were predominant in CGP, whereas the phyla Cyanobacteria and Chloroflexi and genera Leptolyngbya, Anaerolinea and Polynucleobacter survived better in land walls and bank slopes. Dissolved oxygen, ammonia nitrogen and temperature were characterized as the main factors driving the bacterial community composition. The most abundant groups of metabolic functions were also identified as ammonia oxidizers, sulphate reducers, and dehalogenators. Additionally, functional groups related to biocorrosion were found to account for the largest proportion (14.0% of total sequences) in gate piers, followed by those in land walls (11.5%) and bank slopes (10.2%). Concrete gate piers were at the greatest risk of biocorrosion with the most abundant negative bacterial groups, especially for sulphate reducers. Thus, it should be paid high attention to the biocorrosion prevention of concrete gate piers. Overall, this study contributed to the optimization of microbial control and the improvement of the safety management for water conservation structures. Copyright © 2017 Elsevier Ltd. All rights reserved.

Ecology of free-living nematodes from the continental shelf of the central great barrier reef province

NASA Astrophysics Data System (ADS)

Tietjen, John H.

1991-05-01

Nematode assemblages from five sites on the continental shelf of the central Great Barrier Reef (GBR) along a transect ranging from inshore muddy quartz to offshore carbonate sands were examined in austral spring (October 1987) and summer (January 1988). Assemblages at all sites were characterized by very even distributions (low dominance) of families, genera and species. Average per cent abundances of the dominant family (Chromadoridae), genus ( Theristus) and species ( Spilophorella paradoxa), respectively, were 16, 10 and 8% of the total number of specimens identified. The diversity of species ( H' = 3·35-4·08) from the GBR was higher than that normally calculated for shelf nematode assemblages; species richness (SR = 10·64-16·67) and evenness (J' = 0·82-0·91) values approximate those characteristic of deep-sea nematode assemblages, suggesting equitable exploitation of the interstitial environment on the GBR shelf by many species. This was also indicated by a nodal analysis of the 22 dominant species, which exhibited no strong preference for any particular sediment or site. Non-selective deposit and epistrate feeders were the most abundant trophic types among the nematodes. The abundance of non-selective deposit feeders was significantly greater in the summer than spring assemblages, accompanying differences also observed in the per cent composition of several species. Shortterm fluctuations in species composition and high species diversity of nematodes on the central Great Barrier Reef shelf may be the result of high sediment heterogeneity (caused by cyclones and frequent prawn trawling), a rich bacterial flora, continuous warm temperatures and low macroinfaunal abundance.

Composition and abundance of tree regeneration

Treesearch

Todd F. Hutchinson; Elaine Kennedy Sutherland; Charles T. Scott

2003-01-01

The composition and abundance of tree seedlings and saplings in the four study areas in southern Ohio were related to soil moisture via a GIS-derived integrated moisture index and to soil texture and fertility. For seedlings, the total abundance of small stems (less than 30 cm tall) was significantly greater on xeric plots (81,987/ha) than on intermediate (54,531/ha)...

Element- and charge-state-resolved ion energies in the cathodic arc plasma from composite AlCr cathodes in argon, nitrogen and oxygen atmospheres

DOE Office of Scientific and Technical Information (OSTI.GOV)

Franz, Robert; Polcik, Peter; Anders, André

The energy distribution functions of ions in the cathodic arc plasma using composite AlCr cathodes were measured as a function of the background gas pressure in the range 0.5 to 3.5 Pa for different cathode compositions and gas atmospheres. The most abundant aluminium ions were Al+ regardless of the background gas species, whereas Cr 2+ ions were dominating in Ar and N 2 and Cr + in O 2 atmospheres. The energy distributions of the aluminium and chromium ions typically consisted of a high-energy fraction due to acceleration in the expanding plasma plume from the cathode spot and thermalised ionsmore » that were subjected to collisions in the plasma cloud. The fraction of the latter increased with increasing background gas pressure. Atomic nitrogen and oxygen ions showed similar energy distributions as the aluminium and chromium ions, whereas the argon and molecular nitrogen and oxygen ions were formed at greater distance from the cathode spot and thus less subject to accelerating gradients. In addition to the positively charged metal and gas ions, negatively charged oxygen and oxygen-containing ions were observed in O 2 atmosphere. The obtained results are intended to provide a comprehensive overview of the ion energies and charge states in the arc plasma of AlCr composite cathodes in different gas atmospheres as such plasmas are frequently used to deposit thin films and coatings.« less

Element- and charge-state-resolved ion energies in the cathodic arc plasma from composite AlCr cathodes in argon, nitrogen and oxygen atmospheres

DOE PAGES

Franz, Robert; Polcik, Peter; Anders, André

2015-06-01

The energy distribution functions of ions in the cathodic arc plasma using composite AlCr cathodes were measured as a function of the background gas pressure in the range 0.5 to 3.5 Pa for different cathode compositions and gas atmospheres. The most abundant aluminium ions were Al+ regardless of the background gas species, whereas Cr 2+ ions were dominating in Ar and N 2 and Cr + in O 2 atmospheres. The energy distributions of the aluminium and chromium ions typically consisted of a high-energy fraction due to acceleration in the expanding plasma plume from the cathode spot and thermalised ionsmore » that were subjected to collisions in the plasma cloud. The fraction of the latter increased with increasing background gas pressure. Atomic nitrogen and oxygen ions showed similar energy distributions as the aluminium and chromium ions, whereas the argon and molecular nitrogen and oxygen ions were formed at greater distance from the cathode spot and thus less subject to accelerating gradients. In addition to the positively charged metal and gas ions, negatively charged oxygen and oxygen-containing ions were observed in O 2 atmosphere. The obtained results are intended to provide a comprehensive overview of the ion energies and charge states in the arc plasma of AlCr composite cathodes in different gas atmospheres as such plasmas are frequently used to deposit thin films and coatings.« less

Intraspecies variation in a widely distributed tree species regulates the responses of soil microbiome to different temperature regimes.

PubMed

Zhang, Cui-Jing; Delgado-Baquerizo, Manuel; Drake, John E; Reich, Peter B; Tjoelker, Mark G; Tissue, David T; Wang, Jun-Tao; He, Ji-Zheng; Singh, Brajesh K

2018-04-01

Plant characteristics in different provenances within a single species may vary in response to climate change, which might alter soil microbial communities and ecosystem functions. We conducted a glasshouse experiment and grew seedlings of three provenances (temperate, subtropical and tropical origins) of a tree species (i.e., Eucalyptus tereticornis) at different growth temperatures (18, 21.5, 25, 28.5, 32 and 35.5°C) for 54 days. At the end of the experiment, bacterial and fungal community composition, diversity and abundance were characterized. Measured soil functions included surrogates of microbial respiration, enzyme activities and nutrient cycling. Using Permutation multivariate analysis of variance (PerMANOVA) and network analysis, we found that the identity of tree provenances regulated both structure and function of soil microbiomes. In some cases, tree provenances substantially affected the response of microbial communities to the temperature treatments. For example, we found significant interactions of temperature and tree provenance on bacterial community and relative abundances of Chloroflexi and Zygomycota, and inorganic nitrogen. Microbial abundance was altered in response to increasing temperature, but was not affected by tree provenances. Our study provides novel evidence that even a small variation in biotic components (i.e., intraspecies tree variation) can significantly influence the response of soil microbial community composition and specific soil functions to global warming. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

Dependence of weak interaction rates on the nuclear composition during stellar core collapse

NASA Astrophysics Data System (ADS)

Furusawa, Shun; Nagakura, Hiroki; Sumiyoshi, Kohsuke; Kato, Chinami; Yamada, Shoichi

2017-02-01

We investigate the influences of the nuclear composition on the weak interaction rates of heavy nuclei during the core collapse of massive stars. The nuclear abundances in nuclear statistical equilibrium (NSE) are calculated by some equation of state (EOS) models including in-medium effects on nuclear masses. We systematically examine the sensitivities of electron capture and neutrino-nucleus scattering on heavy nuclei to the nuclear shell effects and the single-nucleus approximation. We find that the washout of the shell effect at high temperatures brings significant change to weak rates by smoothing the nuclear abundance distribution: the electron capture rate decreases by ˜20 % in the early phase and increases by ˜40 % in the late phase at most, while the cross section for neutrino-nucleus scattering is reduced by ˜15 % . This is because the open-shell nuclei become abundant instead of those with closed neutron shells as the shell effects disappear. We also find that the single-nucleus description based on the average values leads to underestimations of weak rates. Electron captures and neutrino coherent scattering on heavy nuclei are reduced by ˜80 % in the early phase and by ˜5 % in the late phase, respectively. These results indicate that NSE like EOS accounting for shell washout is indispensable for the reliable estimation of weak interaction rates in simulations of core-collapse supernovae.

Extensive nitrification and active ammonia oxidizers in two contrasting coastal systems of the Baltic Sea.

PubMed

Happel, Elisabeth; Bartl, Ines; Voss, Maren; Riemann, Lasse

2018-06-19

Nitrification is important in nitrogen (N) cycling of aquatic environments, but knowledge about its regulation and importance is sparse. Here we examined nitrification and ammonia oxidizers in the Baltic Sea. We investigated two sites with different catchment characteristics (agricultural and forest), the Bay of Gdánsk (south) and the Öre Estuary (north), and measured pelagic nitrification rates and abundance, composition, and expression of ammonia monooxygenase (amoA) genes. Highest nitrification rates were found in the nutrient rich Bay of Gdańsk. Interestingly, abundances of ammonia-oxidizing archaea (AOA) and bacteria (AOB) were orders of magnitude lower than reported from other sites. Although AOA were most abundant at both sites, the highest expression levels were from AOB. Interestingly, few AOA and AOB taxa dominated amoA gene expression, with a Nitrosomarinus related phylotype showing widespread expression. AOA and AOB communities differed between sites and depths, respectively, with the composition in rivers being distinct. A storm event, causing an even depth distribution of nitrification and particles in the Bay of Gdańsk, indicated that the presence of particles stimulate nitrification. The study highlights coastal regions as dynamic sites of extensive pelagic nitrification, which may affect local food web dynamics and loss of N mediated by denitrification. This article is protected by copyright. All rights reserved. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

Distribution of Chironomidae in a semiarid intermittent river of Brazil.

PubMed

Farias, R L; Carvalho, L K; Medeiros, E S F

2012-12-01

The effects of the intermittency of water flow on habitat structure and substrate composition have been reported to create a patch dynamics for the aquatic fauna, mostly for that associated with the substrate. This study aims to describe the spatial distribution of Chironomidae in an intermittent river of semiarid Brazil and to associate assemblage composition with environmental variables. Benthic invertebrates were sampled during the wet and dry seasons using a D-shaped net (40 cm wide and 250 μm mesh), and the Chironomidae were identified to genus level. The most abundant genera were Tanytarsus, Polypedilum, and Saetheria with important contributions of the genera Procladius, Aedokritus, and Dicrotendipes. Richness and density were not significantly different between the study sites, and multiple regression showed that the variation in richness and density explained by the environmental variables was significant only for substrate composition. The composition of genera showed significant spatial segregation across the study sites. Canonical Correspondence Analysis showed significant correspondence between Chironomidae composition and the environmental variables, with submerged vegetation, elevation, and leaf litter being important predictors of the Chironomidae fauna. This study showed that Chironomidae presented important spatial variation along the river and that this variation was substantially explained by environmental variables associated with the habitat structure and river hierarchy. We suggest that the observed spatial segregation in the fauna results in the high diversity of this group of organisms in intermittent streams.

Fe isotope composition of bulk chondrules from Murchison (CM2): Constraints for parent body alteration, nebula processes and chondrule-matrix complementarity

NASA Astrophysics Data System (ADS)

Hezel, Dominik C.; Wilden, Johanna S.; Becker, Daniel; Steinbach, Sonja; Wombacher, Frank; Harak, Markus

2018-05-01

Chondrules are a major constituent of primitive meteorites. The formation of chondrules is one of the most elusive problems in cosmochemistry. We use Fe isotope compositions of chondrules and bulk chondrites to constrain the conditions of chondrule formation. Iron isotope compositions of bulk chondrules are so far only known from few studies on CV and some ordinary chondrites. We studied 37 chondrules from the CM chondrite Murchison. This is particularly challenging, as CM chondrites contain the smallest chondrules of all chondrite groups, except for CH chondrites. Bulk chondrules have δ56Fe between -0.62 and +0.24‰ relative to the IRMM-014 standard. Bulk Murchison has as all chondrites a δ56Fe of 0.00‰ within error. The δ56Fe distribution of the Murchison chondrule population is continuous and close to normal. The width of the δ56Fe distribution is narrower than that of the Allende chondrule population. Opaque modal abundances in Murchison chondrules is in about 67% of the chondrules close to 0 vol.%, and in 33% typically up to 6.5 vol.%. Chondrule Al/Mg and Fe/Mg ratios are sub-chondritic, while bulk Murchison has chondritic ratios. We suggest that the variable bulk chondrule Fe isotope compositions were established during evaporation and recondensation prior to accretion in the Murchison parent body. This range in isotope composition was likely reduced during aqueous alteration on the parent body. Murchison has a chondritic Fe isotope composition and a number of chondritic element ratios. Chondrules, however, have variable Fe isotope compositions and chondrules and matrix have complementary Al/Mg and Fe/Mg ratios. In combination, this supports the idea that chondrules and matrix formed from a single reservoir and were then accreted in the parent body. The formation in a single region also explains the compositional distribution of the chondrule population in Murchison.

Distribution and significance of long-chain alkenones as salinity and temperature indicators in Spanish saline lake sediments

NASA Astrophysics Data System (ADS)

Pearson, Emma J.; Juggins, Steve; Farrimond, Paul

2008-08-01

We investigated relationships between sedimentary solvent-extractable long-chain alkenone (LCA) concentration and composition and environmental factors in a suite of endorheic lakes from inland Spain. LCAs were found in 14 of the 54 lakes examined, with concentrations comparable with those from previously published lacustrine settings. The composition of LCAs in our sites, however, contrast from the majority of those previously reported from lake environments; in our study the tri-unsaturated component is the most abundant component at most sites where LCAs are detected, and C 38:3 is the most abundant LCA in the majority of sites. LCA occurrence appears to be restricted to brackish-hypersaline sites and C 37 LCAs are absent above a salinity of ˜40 g L -1 suggesting a salinity control on LCA-producing organisms in these sites. Low concentrations of C 37 LCA components means U37k and U37k temperature indices are generally not applicable. Instead we find good relationships between C 38 components and (in particular mean autumn) temperature and the strongest LCA-temperature relationships are found when using a combination of all C 37 and C 38 compounds. We propose a new alkenone temperature index for lakes with elevated salinity and where the C 38 components dominate the LCA distributions. This is expressed as U3738k=0.0464×MAutAT-0.867 ( r2 = 0.80, n = 13). In this paper, we provide the first account of sedimentary LCA distributions from lakes in inland Spain, extending the range of environments within which these compounds have been found and highlighting their significance as indicators of both salinity and temperature in saline, endorheic lake environments. This has important implications for extending the potential role of LCAs as palaeoclimatic indicators in lacustrine environments.

Large-Scale Spatial Distribution Patterns of Gastropod Assemblages in Rocky Shores

PubMed Central

Miloslavich, Patricia; Cruz-Motta, Juan José; Klein, Eduardo; Iken, Katrin; Weinberger, Vanessa; Konar, Brenda; Trott, Tom; Pohle, Gerhard; Bigatti, Gregorio; Benedetti-Cecchi, Lisandro; Shirayama, Yoshihisa; Mead, Angela; Palomo, Gabriela; Ortiz, Manuel; Gobin, Judith; Sardi, Adriana; Díaz, Juan Manuel; Knowlton, Ann; Wong, Melisa; Peralta, Ana C.

2013-01-01

Gastropod assemblages from nearshore rocky habitats were studied over large spatial scales to (1) describe broad-scale patterns in assemblage composition, including patterns by feeding modes, (2) identify latitudinal pattern of biodiversity, i.e., richness and abundance of gastropods and/or regional hotspots, and (3) identify potential environmental and anthropogenic drivers of these assemblages. Gastropods were sampled from 45 sites distributed within 12 Large Marine Ecosystem regions (LME) following the NaGISA (Natural Geography in Shore Areas) standard protocol (www.nagisa.coml.org). A total of 393 gastropod taxa from 87 families were collected. Eight of these families (9.2%) appeared in four or more different LMEs. Among these, the Littorinidae was the most widely distributed (8 LMEs) followed by the Trochidae and the Columbellidae (6 LMEs). In all regions, assemblages were dominated by few species, the most diverse and abundant of which were herbivores. No latitudinal gradients were evident in relation to species richness or densities among sampling sites. Highest diversity was found in the Mediterranean and in the Gulf of Alaska, while highest densities were found at different latitudes and represented by few species within one genus (e.g. Afrolittorina in the Agulhas Current, Littorina in the Scotian Shelf, and Lacuna in the Gulf of Alaska). No significant correlation was found between species composition and environmental variables (r≤0.355, p>0.05). Contributing variables to this low correlation included invasive species, inorganic pollution, SST anomalies, and chlorophyll-a anomalies. Despite data limitations in this study which restrict conclusions in a global context, this work represents the first effort to sample gastropod biodiversity on rocky shores using a standardized protocol across a wide scale. Our results will generate more work to build global databases allowing for large-scale diversity comparisons of rocky intertidal assemblages. PMID:23967204

Water Quality Conditions in the Missouri River Mainstem System 2007 Report

DTIC Science & Technology

2008-06-01

Inicrocystins, and phytoplankton taxa occmTence and relative abundance . 3.1.2 BACTERIA MONITORING AT SWIMMING BEACHES The Distiict has cooperated with the... abundant algae throughout the entire sampling period based on percent composition (Plates 80 - 83). The Shannon-Weaver genera diversity indices...most abundant algae based on percent composition (Plate 180). The Shannon-Weaver genera diversity indices calculated for the 18 phytoplankton samples

Soil disturbance effects on the composition of seed-dispersing ants in roadside environments.

PubMed

Palfi, Zsofia; Spooner, Peter G; Robinson, Wayne

2017-02-01

Myrmecochory (the dispersal of seeds by ants) is a significant ecological process in sclerophyll woodlands, but habitat disturbance is known to alter the extent and success of this mutualism. We investigated the influence of soil disturbance on the composition of the seed-dispersing ant community. Surveys were conducted in roadside verges where soils are regularly disturbed by road maintenance activities. Using a 'cafeteria' bait station approach, we selected 24 roads of different widths to investigate ant composition and abundance in relation to soil disturbance. We found ant species richness was greater in non-disturbed than disturbed zones, where road verge width significantly influenced results. The composition and abundance of individual seed-dispersing ant species varied between disturbed and non-disturbed zones. Rhytidoponera metallica were more abundant in non-disturbed sites, whereas Melophorus bruneus and Monomorium rothseini were more frequently recorded in disturbed areas. Commonly found Iridomyrmex purpureus was significantly more abundant in disturbed zones in narrow roadsides and vice versa in wide roadsides, and strongly influenced total community composition. Variation in the abundance of commonly recorded Iridomyrmex and Monomorium genera were related more to site conditions (roadside width and habitat) than soil disturbance. The rich composition of seed dispersing ants in roadside environments, and the effects of soil disturbances on these ant communities that we describe, provide a key insight to important seed dispersal vectors occurring in fragmented rural landscapes.

The M3 project

NASA Astrophysics Data System (ADS)

Poulet, Francois; Carter, John; Riu, Lucie; Martinez, Antoine; Bibring, Jean-Pierre; Gondet, Brigitte; Langevin, Yves

2017-10-01

An essential part of revealing the past conditions that occurred at the surface of Mars is determining its mineralogy. Igneous compositions can provide insight into mechanisms such as crustal formation, magma differentiation and volcanic activity, while clays, salts and other altered phases can constrain the past liquid water environments on/near the surface. The visible near-infrared imaging spectrometer OMEGA on board the ESA Mars Express mission provided major steps in our understanding of the composition of the Martian surface by mapping anhydrous and hydrated minerals (Riu et al. 2017; Carter et al. 2017). The ultimate step in interpreting IR OMEGA data is a quantitative retrieval of mineral abundances from the modeling of spectra of selected terrains. So far, such an approach was performed on restricted areas of the surface using a radiative transfer model (Poulet et al., 2009, 2014). The purpose of the M3 (Modal Mineralogy of Mars) project is thus to provide global distributions of Martian surface minerals using previous OMEGA investigations, and to distribute the mineral maps to the science community through the web portal PSUP (Poulet et al. 2017). Two types of terrains are considered: type 1: mafic-bearing ones; type 2: hydrated deposits.For type-1 terrains, a 3-D global image cube was constructed containing atmospheric- and aerosol-corrected NIR spectra distributed over 32px/° and +/-60° of latitude with a surface coverage of 90%. NIR reflectance spectra were modeled to retrieve mineral abundances and particle grain sizes of the mafic-bearing terrains. This work is completed with final maps presented this year (Riu et al. 2017).For type-2 terrains, a specific approach is required. First, signatures of hydrated minerals are detected for each single OMEGA cube. Second, the spectral modeling is applied to each pixel and then the modeled abundances are averaged when overlapping observations occur for a specific location. The validation of this approach has been performed on two regions that exhibit the greatest mineral diversity of hydrated minerals on Mars: Nilo-Syrtis region and Mawrth Vallis/Oxia Planum region. Mineral maps of various hydrated and primary phases will be presented.

Gulf of California biogeographic regions based on coastal zone color scanner imagery

NASA Astrophysics Data System (ADS)

SantamaríA-Del-Angel, Eduardo; Alvarez-Borrego, Saúl; Müller-Karger, Frank E.

1994-04-01

Topographically, the Gulf of California is divided into a series of basins and trenches that deepen to the south. Maximum depth at the mouth is greater than 3000 m. Most of the northern gulf is less than 200 m deep. The gulf has hydrographic features conducive to high primary productivity. Upwelling events have been described on the basis of temperature distributions at the eastern coast during winter and spring and at the western coast during summer. Tidal amplitude may be as high as 9 m in the upper gulf. On the basis of discrete phytoplankton sampling, the gulf was previously divided into four geographic regions. This division took into consideration only the space distribution, taxonomic composition, and abundance of microphytoplankton. With the availability of the coastal zone color scanner (CZCS) imagery, we were able to include the time variability of pigments to make a more detailed biogeographic division of the gulf. With weekly composites of the imagery, we generated time series of pigment concentrations for 33 locations throughout the gulf and for the whole life span of the CZCS. The time series show a clear seasonal variation, with maxima in winter and spring and minima in summer. The effect of upwelling at the eastern coast is clearly evident, with high pigment concentrations. The effect of the summer upwelling off the Baja California coast is not evident in these time series. Time series from locations on the western side of the gulf also show maxima in winter and spring that are due to the eddy circulation that brings upwelled water from the eastern side. Principal-component analysis was applied to define 14 regions. Ballenas Channel, between Angel de la Guarda and Baja California, and the upper gulf always appeared as very distinct regions. Some of these 14 regions relate to the geographic distributions of important faunal groups, including the benthos, or their life cycles. For example, the upper gulf is a place for reproduction and the nursery of many fish species, marine mammals and birds are specially abundant in Ballenas Channel, sardine spawning mostly occurs in the central gulf in spring, and shrimp are abundant off mainland Mexico.

Drivers of inter-annual variability in C4 abundance in mixed C3-C4 grasslands

NASA Astrophysics Data System (ADS)

Griffith, D.; Ratajczak, Z.; Anderson, M.; Lind, E. M.; Still, C. J.

2016-12-01

Grassland communities tend to be dominated by either C3 or C4 grass species, as opposed to being evenly mixed. Globally, this pattern is a consequence of the crossover temperature threshold above which C4 grasses are climatically favored. However, C3-C4 distributions can also be distinctly bimodal at the landscape scale, reflecting variation in fire regime, herbivory, soils, and other factors that favor either C3 or C4 vegetation. As such, our aims were to first investigate the global controls on C3 and C4 species pools, and second to determine the magnitude of inter-annual variation in C4 grass relative abundance in mixed C3-C4 grasslands with different fire regimes, soil nitrogen, and grazing pressures. Our analyses used data from 74 globally distributed Nutrient Network sites, 30 of which are mixed C3-C4 grasslands. Each site has factorial fertilizer (NPK) and herbivore exclosure treatments in replicated blocks. To address our first goal we conducted a random forest analysis of site-level C4 relative abundances in relation to mean annual temperature and rainfall, growing season temperature (GST) and rainfall, rainfall seasonality, aridity, fire frequency and management, frost, soil fertility, and grass lineage. In order to address our second goal, we narrowed our focus to sites having mixed C3-C4 grass composition and at least five years of species composition data (16 sites). A GST of 15 °C was a good descriptor of C4 versus C3 grass dominance, although there were marked differences among specific C4 grass lineages in their distributions. For example, whether or not a site has an actively managed burn regime was a greater predictor of Andropogoneae (C4) than GST. Furthermore, in mixed C3-C4 grasslands fertilization favored C3 grasses. Our research delineates the climatic limits of mixed C3-C4 grasslands and highlights the influence of disturbance, soil, and phylogeny on C4 and C3 grass dominance.

Distribution of Epiphytic Diatoms in a Sub-Tropical Estuary

NASA Astrophysics Data System (ADS)

Frankovich, T. A.; Gaiser, E. E.; Wachnicka, A.; Zieman, J. C.

2005-05-01

Within estuaries, seagrasses may represent an order of magnitude greater surface area relative to sediments for the colonization and growth of diatoms. Fossil diatom distributions have proven useful in inferring paleoenvironmental conditions. The strength of these inferences is dependent upon defining the environmental relationships of contempory diatom compositions. The present investigation characterized the modern epiphytic diatom flora on the seagrass Thalassia testudinum at seven sites in the sub-tropical Florida Bay estuary and at one Atlantic Ocean site east of the upper Florida Keys. These sites were sampled six times between March 2000 and April 2001. Diatom species composition was related to water quality parameters using multivariate statistics. 338 diatom species were identified. The seven most abundant species from pooled samples were Cocconeis placentula, Brachysira aponina, Nitzschia liebetruthii, Hyalosynedra laevigata, Amphora cf. tenerrima, Mastogloia crucicula, and M. pusilla. These seven species collectively accounted for 51.7 percent of all valves counted and occurred in at least 85 percent of all samples. Analysis of similiarity and NMDS ordination of species relative abundances revealed four distinct diatom communities across the study region. The spatial variability of these communities was correlated with salinity and water-column nutrient availability. Summertime communities were significantly different from winter-spring communities, but these communities showed a gradual temporal progression with much overlap. The temporal variability was correlated with temperature. Indicator species analysis identified many species significantly influencing the four spatial groups. The Atlantic marine site was characterized by many different Mastogloia species and some epipsammic (sand-grain associated) diatoms (i.e., Cymatosira lorenziana, Dimerogramma dubium, and Neofragilaria nicobarica). Mastogloia pusilla, Rhopalodia pacifica, and Cocconeis woodii were strong indicators of the Gulf of Mexico marine site. Reimerothrix floridensis was particularly abundant in the western interior of Florida Bay (i.e., sites 2, 3, and 4) during summer months. The eastern interior of Florida Bay was characterized by high relative abundances of Brachysira aponina and Nitzschia liebetruthii. The optima and tolerance of these indicator species relative to individual water quality parameters were also determined.

Production of n-alkyl lipids in living plants and implications for the geologic past

NASA Astrophysics Data System (ADS)

Diefendorf, Aaron F.; Freeman, Katherine H.; Wing, Scott L.; Graham, Heather V.

2011-12-01

Leaf waxes (i.e., n-alkyl lipids or n-alkanes) are land-plant biomarkers widely used to reconstruct changes in climate and the carbon isotopic composition of the atmosphere. There is little information available, however, on how the production of leaf waxes by different kinds of plants might influence the abundance and isotopic composition of n-alkanes in sedimentary archives. This lack of information increases uncertainty in interpreting n-alkyl lipid abundance and δ 13C signals in ancient settings. We provide here n-alkyl abundance distributions and carbon isotope fractionation data for deciduous and evergreen angiosperm and gymnosperm leaves from 46 tree species, representing 24 families. n-Alkane abundances are significantly higher in angiosperms than gymnosperms; many of the gymnosperm species investigated did not produce any n-alkanes. On average, deciduous angiosperms produce 200 times more n-alkanes than deciduous gymnosperms. Although differences between angiosperms and gymnosperms dominate the variance in n-alkane abundance, leaf life-span is also important, with higher n-alkane abundances in longer-lived leaves. n-Alkanol abundances covary with n-alkanes, but n-alkanoic acids have similar abundances across all plant groups. Isotopic fractionation between leaf tissue and individual alkanes ( ɛlipid) varies by as much as 10‰ among different chain lengths. Overall, ɛlipid values are slightly lower (-4.5‰) for angiosperm than for gymnosperm (-2.5‰) n-alkanes. Angiosperms commonly express slightly higher Δleaf (photosynthetic discrimination) relative to gymnosperms under similar growth conditions. As a result, angiosperm n-alkanes are expected to be generally 3-5‰ more depleted in 13C relative to gymnosperm alkanes for the same locality. Differences in n-alkane production indicate the biomarker record will largely (but not exclusively) reflect angiosperms if both groups were present, and also that evergreen plants will likely be overrepresented compared with deciduous ones. We apply our modern lipid abundance patterns and ɛlipid results to constrain the magnitude of the carbon isotope excursion (CIE) at the onset of the Paleocene-Eocene Thermal Maximum (55.8 Ma). When Bighorn Basin (WY) sediment n-alkanes are interpreted in context of floral changes and modern n-alkane production estimates for angiosperms and gymnosperms, the CIE is greater in magnitude (-5.6‰) by ˜1‰ compared to previous estimates that do not take into account n-alkane production.

How do frugivores track resources? Insights from spatial analyses of bird foraging in a tropical forest

USGS Publications Warehouse

Saracco, J.F.; Collazo, J.A.; Groom, Martha J.

2004-01-01

Frugivores often track ripe fruit abundance closely across local areas despite the ephemeral and typically patchy distributions of this resource. We use spatial auto- and cross-correlation analyses to quantify spatial patterns of fruit abundance and avian frugivory across a 4-month period within a forested 4.05-ha study grid in Puerto Rico. Analyses focused on two tanager species, Spindalis portoricensis and Nesospingus speculiferus, and their principal food plants. Three broad questions are addressed: (1) at what spatial scales is fruit abundance and frugivory patchy; (2) at what spatial scales do frugivores respond to fruit abundance; and (3) to what extent do spatial patterns of frugivory overlap between bird species? Fruit patch size, species composition, and heterogeneity was variable among months, despite fruit patch locations remaining relatively consistent between months. Positive correlations between frugivory and fruit abundance suggested tanagers successfully tracked fruit abundance. Frugivory was, however, more localized than fruit abundance. Scales of spatial overlap in frugivory and monthly variation in the foraging locations of the two tanager species suggested that interspecific facilitation may have been important in determining bird foraging locations. In particular, S. portoricensis, a specialist frugivore, may have relied on the loud calls of the gregarious generalist, N. speculiferus, to find new foraging areas. Such a mechanism could help explain the formation of mixed species feeding flocks and highlights the potential importance of facilitation between species that share resources. ?? Springer-Verlag 2004.

Mechanism of Muong Nong-type tektite formation and speculation on the source of Australasian tektites

NASA Technical Reports Server (NTRS)

Schnetzler, C. C.

1992-01-01

The source crater of the youngest and largest of the tektite strewnfields, the Australasian strewnfield, has not been located. A number of lines of evidence indicate that the Muong Nong-type tektites, primarily found in Indochina, are more primitive than the much more abundant and widespread splash-form tektites, and are proximal to the source. In this study the spatial distribution of Muong Nong-type tektite sites and chemical character have been used to indicate the approximate location of the source. The variation of Muong Nong-type tektite chemical composition appears to be caused by mixing of two silicate rock end-members and a small amount of limestone, and not by vapor fractionation. The variation in composition is not random, and does not support in situ melting or multiple impact theories. The distribution of both Muong Nong and splash-form tektite sites suggest the source is in a limited area near the southern part of the Thailand-Laos border.

Deoxygenation alters bacterial diversity and community composition in the ocean's largest oxygen minimum zone.

PubMed

Beman, J Michael; Carolan, Molly T

2013-01-01

Oceanic oxygen minimum zones (OMZs) have a central role in biogeochemical cycles and are expanding as a consequence of climate change, yet how deoxygenation will affect the microbial communities that control these cycles is unclear. Here we sample across dissolved oxygen gradients in the oceans' largest OMZ and show that bacterial richness displays a unimodal pattern with decreasing dissolved oxygen, reaching maximum values on the edge of the OMZ and decreasing within it. Rare groups on the OMZ margin are abundant at lower dissolved oxygen concentrations, including sulphur-cycling Chromatiales, for which 16S rRNA was amplified from extracted RNA. Microbial species distribution models accurately replicate community patterns based on multivariate environmental data, demonstrate likely changes in distributions and diversity in the eastern tropical North Pacific Ocean, and highlight the sensitivity of key bacterial groups to deoxygenation. Through these mechanisms, OMZ expansion may alter microbial composition, competition, diversity and function, all of which have implications for biogeochemical cycling in OMZs.

Deoxygenation alters bacterial diversity and community composition in the ocean’s largest oxygen minimum zone

NASA Astrophysics Data System (ADS)

Beman, J. Michael; Carolan, Molly T.

2013-10-01

Oceanic oxygen minimum zones (OMZs) have a central role in biogeochemical cycles and are expanding as a consequence of climate change, yet how deoxygenation will affect the microbial communities that control these cycles is unclear. Here we sample across dissolved oxygen gradients in the oceans’ largest OMZ and show that bacterial richness displays a unimodal pattern with decreasing dissolved oxygen, reaching maximum values on the edge of the OMZ and decreasing within it. Rare groups on the OMZ margin are abundant at lower dissolved oxygen concentrations, including sulphur-cycling Chromatiales, for which 16S rRNA was amplified from extracted RNA. Microbial species distribution models accurately replicate community patterns based on multivariate environmental data, demonstrate likely changes in distributions and diversity in the eastern tropical North Pacific Ocean, and highlight the sensitivity of key bacterial groups to deoxygenation. Through these mechanisms, OMZ expansion may alter microbial composition, competition, diversity and function, all of which have implications for biogeochemical cycling in OMZs.

Microplastic pollution in North Yellow Sea, China: Observations on occurrence, distribution and identification.

PubMed

Zhu, Lin; Bai, Huaiyu; Chen, Bijuan; Sun, Xuemei; Qu, Keming; Xia, Bin

2018-09-15

Microplastics are emerging contaminants and have attracted widespread environmental concerns about their negative effects on the marine ecosystems. In this study, we investigated the abundances, distributions and characteristics of microplastics in surface seawater and sediments from the North Yellow Sea. The results showed that the abundance of microplastics was 545 ± 282 items/m 3 in surface seawater and 37.1 ± 42.7 items/kg dry weight in sediments, representing a medium microplastic pollution level compared with other sea areas. Small microplastics (<1 mm) made up >70% of the total microplastic numbers. Films and fibers were the dominant shapes of microplastics in both the surface seawater and sediments. Transparent microplastics were generally more common than microplastics of other colors. Based on the identification by a Fourier transform infrared microscope, polyethylene (PE) was the dominant composition of microplastics in surface seawater, while polypropylene (PP) was the most common polymer type in sediments. These results will improve our understanding of the environmental risks posed by microplastics to marine ecosystems. Copyright © 2018 Elsevier B.V. All rights reserved.

Benthic marine litter in four Gulfs in Greece, Eastern Mediterranean; abundance, composition and source identification

NASA Astrophysics Data System (ADS)

Koutsodendris, Andreas; Papatheodorou, George; Kougiourouki, Ourania; Georgiadis, Michalis

2008-04-01

The types, abundance, distribution and sources of benthic marine litter found in four Greek Gulfs (Patras, Corinth, Echinades and Lakonikos) were studied using bottom trawl nets. Mean distribution and weight densities range between 72-437 Item/km 2 and 6.7-47.4 kg/km 2. Litter items were sorted into material and usage categories. Plastic litter (56%) is the most dominant material category followed by metal (17%) and glass (11%). Beverage packaging (32%) is the dominant usage category followed by general packaging (28%) and food packaging (21%). Based on the typological results three dominant litter sources were identified; land-based, vessel-based and fishery-based. Application of factor analysis (R- and Q-mode) conducted on both material and usage litter datasets confirmed the existence of the three dominant litter sources. Q-mode analysis further resulted in the quantification of the litter sources; land-based ones provided the majority (69%) of the total litter items followed by vessel-based (26%) and fishery-based (5%) sources. Diverse environmental parameters influence significantly these amounts among the four Gulfs.

Abundance, size and polymer composition of marine microplastics ≥10μm in the Atlantic Ocean and their modelled vertical distribution.

PubMed

Enders, Kristina; Lenz, Robin; Stedmon, Colin A; Nielsen, Torkel G

2015-11-15

We studied abundance, size and polymer type of microplastic down to 10μm along a transect from the European Coast to the North Atlantic Subtropical Gyre (NASG) using an underway intake filtration technique and Raman micro-spectrometry. Concentrations ranged from 13 to 501itemsm(-3). Highest concentrations were observed at the European coast, decreasing towards mid-Atlantic waters but elevated in the western NASG. We observed highest numbers among particles in the 10-20μm size fraction, whereas the total volume was highest in the 50-80μm range. Based on a numerical model size-dependent depth profiles of polyethylene microspheres in a range from 10-1000μm were calculated and show a strong dispersal throughout the surface mixed layer for sizes smaller than 200μm. From model and field study results we conclude that small microplastic is ubiquitously distributed over the ocean surface layer and has a lower residence time than larger plastic debris in this compartment. Copyright © 2015 Elsevier Ltd. All rights reserved.

ACCURATE MODELING OF X-RAY EXTINCTION BY INTERSTELLAR GRAINS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoffman, John; Draine, B. T., E-mail: jah5@astro.princeton.edu, E-mail: draine@astro.princeton.edu

Interstellar abundance determinations from fits to X-ray absorption edges often rely on the incorrect assumption that scattering is insignificant and can be ignored. We show instead that scattering contributes significantly to the attenuation of X-rays for realistic dust grain size distributions and substantially modifies the spectrum near absorption edges of elements present in grains. The dust attenuation modules used in major X-ray spectral fitting programs do not take this into account. We show that the consequences of neglecting scattering on the determination of interstellar elemental abundances are modest; however, scattering (along with uncertainties in the grain size distribution) must bemore » taken into account when near-edge extinction fine structure is used to infer dust mineralogy. We advertise the benefits and accuracy of anomalous diffraction theory for both X-ray halo analysis and near edge absorption studies. We present an open source Fortran suite, General Geometry Anomalous Diffraction Theory (GGADT), that calculates X-ray absorption, scattering, and differential scattering cross sections for grains of arbitrary geometry and composition.« less

Widespread Presence of Glycolaldehyde and Ethylene Glycol around Sagittarius B2

NASA Astrophysics Data System (ADS)

Li, Juan; Shen, Zhiqiang; Wang, Junzhi; Chen, Xi; Li, Di; Wu, Yajun; Dong, Jian; Zhao, Rongbing; Gou, Wei; Wang, Jinqing; Li, Shanghuo; Wang, Bingru; Zheng, Xingwu

2017-11-01

We report the detection of widespread CH2OHCHO and HOCH2CH2OH emission in Galactic center giant molecular cloud Sagittarius B2 using the Shanghai Tianma 65 m Radio Telescope. Our observations show for the first time that the spatial distribution of these two important prebiotic molecules extends over 15 arcmin, corresponding to a linear size of approximately 36 pc. These two molecules are not just distributed in or near the hot cores. The abundance of these two molecules seems to decrease from the cold outer region to the central region associated with star formation activity. Results presented here suggest that these two molecules are likely to form through a low temperature process. Recent theoretical and experimental studies demonstrated that prebiotic molecules can be efficiently formed in icy grain mantles through several pathways. However, these complex ice features cannot be directly observed, and most constraints on the ice compositions come from millimeter observations of desorbed ice chemistry products. These results, combined with laboratory studies, strongly support the existence of abundant prebiotic molecules in ices.

Mineralogical and chemical properties of the lunar regolith

NASA Astrophysics Data System (ADS)

McKay, D. S.; Ming, D. W.

The composition of lunar regolith and its attendant properties are discussed. Tables are provided listing lunar minerals, the abundance of plagioclase feldspar, pyroxene, olivine, and ilmenite in lunar materials, typical compositions of common lunar minerals, and cumulative grain-size distribution for a large number of lunar soils. Also provided are charts on the chemistry of breccias, the chemistry of lunar glass, and the comparative chemistry of surface soils for the Apollo sites. Lunar agglutinates, constructional particles made of lithic, mineral, and glass fragments welded together by a glassy matrix containing extremely fine-grained metallic iron and formed by micrometeoric impacts at the lunar surface, are discussed. Crystalline, igneous rock fragments, breccias, and lunar glass are examined. Volatiles implanted in lunar materials and regolith maturity are also addressed.

Mineralogical and chemical properties of the lunar regolith

NASA Technical Reports Server (NTRS)

Mckay, David S.; Ming, Douglas W.

1989-01-01

The composition of lunar regolith and its attendant properties are discussed. Tables are provided listing lunar minerals, the abundance of plagioclase feldspar, pyroxene, olivine, and ilmenite in lunar materials, typical compositions of common lunar minerals, and cumulative grain-size distribution for a large number of lunar soils. Also provided are charts on the chemistry of breccias, the chemistry of lunar glass, and the comparative chemistry of surface soils for the Apollo sites. Lunar agglutinates, constructional particles made of lithic, mineral, and glass fragments welded together by a glassy matrix containing extremely fine-grained metallic iron and formed by micrometeoric impacts at the lunar surface, are discussed. Crystalline, igneous rock fragments, breccias, and lunar glass are examined. Volatiles implanted in lunar materials and regolith maturity are also addressed.

Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates.

PubMed

Vandeputte, Doris; Falony, Gwen; Vieira-Silva, Sara; Tito, Raul Y; Joossens, Marie; Raes, Jeroen

2016-01-01

The assessment of potentially confounding factors affecting colon microbiota composition is essential to the identification of robust microbiome based disease markers. Here, we investigate the link between gut microbiota variation and stool consistency using Bristol Stool Scale classification, which reflects faecal water content and activity, and is considered a proxy for intestinal colon transit time. Through 16S rDNA Illumina profiling of faecal samples of 53 healthy women, we evaluated associations between microbiome richness, Bacteroidetes:Firmicutes ratio, enterotypes, and genus abundance with self-reported, Bristol Stool Scale-based stool consistency. Each sample's microbiota growth potential was calculated to test whether transit time acts as a selective force on gut bacterial growth rates. Stool consistency strongly correlates with all known major microbiome markers. It is negatively correlated with species richness, positively associated to the Bacteroidetes:Firmicutes ratio, and linked to Akkermansia and Methanobrevibacter abundance. Enterotypes are distinctly distributed over the BSS-scores. Based on the correlations between microbiota growth potential and stool consistency scores within both enterotypes, we hypothesise that accelerated transit contributes to colon ecosystem differentiation. While shorter transit times can be linked to increased abundance of fast growing species in Ruminococcaceae-Bacteroides samples, hinting to a washout avoidance strategy of faster replication, this trend is absent in Prevotella-enterotyped individuals. Within this enterotype adherence to host tissue therefore appears to be a more likely bacterial strategy to cope with washout. The strength of the associations between stool consistency and species richness, enterotypes and community composition emphasises the crucial importance of stool consistency assessment in gut metagenome-wide association studies. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/

Confounding effects of oxygen and temperature on the TEX86 signature of marine Thaumarchaeota

PubMed Central

Qin, Wei; Carlson, Laura T.; Armbrust, E. Virginia; Devol, Allan H.; Moffett, James W.; Stahl, David A.; Ingalls, Anitra E.

2015-01-01

Marine ammonia-oxidizing archaea (AOA) are among the most abundant of marine microorganisms, spanning nearly the entire water column of diverse oceanic provinces. Historical patterns of abundance are preserved in sediments in the form of their distinctive glycerol dibiphytanyl glycerol tetraether (GDGT) membrane lipids. The correlation between the composition of GDGTs in surface sediment and the overlying annual average sea surface temperature forms the basis for a paleotemperature proxy (TEX86) that is used to reconstruct surface ocean temperature as far back as the Middle Jurassic. However, mounting evidence suggests that factors other than temperature could also play an important role in determining GDGT distributions. We here use a study set of four marine AOA isolates to demonstrate that these closely related strains generate different TEX86–temperature relationships and that oxygen (O2) concentration is at least as important as temperature in controlling TEX86 values in culture. All of the four strains characterized showed a unique membrane compositional response to temperature, with TEX86-inferred temperatures varying as much as 12 °C from the incubation temperatures. In addition, both linear and nonlinear TEX86–temperature relationships were characteristic of individual strains. Increasing relative abundance of GDGT-2 and GDGT-3 with increasing O2 limitation, at the expense of GDGT-1, led to significant elevations in TEX86-derived temperature. Although the adaptive significance of GDGT compositional changes in response to both temperature and O2 is unclear, this observation necessitates a reassessment of archaeal lipid-based paleotemperature proxies, particularly in records that span low-oxygen events or underlie oxygen minimum zones. PMID:26283385

The Effects of Environmental Factors on Marine Micro-Phytoplankton Community Composition in the Summertime Western North Atlantic Ocean During WACS II.

NASA Astrophysics Data System (ADS)

Stone, J. T.; Vaillancourt, R. D.

2016-02-01

Micro-phytoplankton community composition was determined along a section in the western North Atlantic Ocean between waters near Bermuda and the New England continental shelf during the Western Atlantic Climate Study II (WACS II) from May 18, 2014 to June 6, 2014. Seawater samples were collected from the underway line (z = 5 meters) of the RV Knorr and preserved in both Lugol's and formalin preservatives. The concentrations of centric diatoms, pennate diatoms, dinoflagellates and dictyophytes were determined using light microscopy of preserved samples settled in Utermöhl chambers. Cell abundance data were compared with the temperature and salinity of the surface seawater to determine statistical relationships between environmental factors and phytoplankton community composition. The micro-phytoplankton concentrations were lowest around the Sargasso Sea. Diatom concentrations varied along the transect from the Sargasso Sea. Dinoflagellates were the only group of micro-phytoplankton in this study to have a clear pattern in their distribution. Dinoflagellates were most numerous in the northern-most waters and were absent in the southern-most point of the study, in the Sargasso Sea. The most abundant species of diatoms observed were in the genera Pseudo-Nitzschia and Leptocylindrus. The most abundant species of dinoflagellate were of the genus Protoperidinium. Many of the samples with the highest species richness were closer to the coast and more northern than the samples with low species richness, however the Simpson's diversity indices varied amongst regions. While many of the samples were diverse, the lowest of which was in the Sargasso Sea, there was no clear pattern of species diversity with respect to the distance from the coast. Dinoflagellates, centric diatoms, pennate diatoms, dictyophytes and diversity indices were significantly weakly correlated with temperature, while dinoflagellates were significantly strongly correlated with salinity.

[Species composition and diversity of soil mesofauna in the 'Holy Hills' fragmentary tropical rain forest of Xishuangbanna, China].

PubMed

Yang, X; Sha, L

2001-04-01

The species composition and diversity of soil mesofauna were examined in fragmented dry tropical seasonal rainforest of tow 'Holy Hills' of Dai nationality, compared with the continuous moist tropical seasonal rain forest of Nature Reserve in Xishuangbanna area. 5 sample quadrats were selected along the diagonal of 20 m x 20 m sampling plot, and the samples of litterfall and 0-3 cm soil were collected from each 50 cm x 10 cm sample quadrat. Animals in soil sample were collected by using dry-funnel(Tullgren's), were identified to their groups according to the order. The H' index, D.G index and the pattern of relative abundance of species were used to compare the diversity of soil mesofauna. The results showed that the disturbance of vegetation and soil resulted by tropical rainforest fragmentation was the major factor affecting the diversity of soil mesofauna. Because the fragmented forest was intruded by some pioneer tree species and the "dry and warm" effect operated, this forest had more litterfall on the floor and more humus in the soil than the continuous moist rain forest. The soil condition with more soil organic matter, total N and P, higher pH value and lower soil bulk density became more favorable to the soil mesofauna. Therefore, the species richness, abundance and diversity of soil mesofauna in fragmented forests were higher than those in continuous forest, but the similarity of species composition in fragmented forest to the continuous forest was minimal. Soil mesofauna diversity in fragmented forests did not change with decreasing fragmented area, indicating that there was no species-area effect operation in this forest. The pattern of relative abundance of species in these forest soils was logarithmic series distribution.

Decreasing seagrass density negatively influences associated fauna

PubMed Central

McCloskey, Rosemary M.

2015-01-01

Seagrass meadows globally are disappearing at a rapid rate with physical disturbances being one of the major drivers of this habitat loss. Disturbance of seagrass can lead to fragmentation, a reduction in shoot density, canopy height and coverage, and potentially permanent loss of habitat. Despite being such a widespread issue, knowledge of how such small scale change affects the spatial distribution and abundances of motile fauna remains limited. The present study investigated fish and macro faunal community response patterns to a range of habitat variables (shoot length, cover and density), including individual species habitat preferences within a disturbed and patchy intertidal seagrass meadow. Multivariate analysis showed a measurable effect of variable seagrass cover on the abundance and distribution of the fauna, with species specific preferences to both high and low seagrass cover seagrass. The faunal community composition varied significantly with increasing/decreasing cover. The faunal species composition of low cover seagrass was more similar to sandy control plots than to higher cover seagrass. Shannon Wiener Diversity (H′) and species richness was significantly higher in high cover seagrass than in low cover seagrass, indicating increasing habitat value as density increases. The results of this study underline how the impacts of small scale disturbances from factors such as anchor damage, boat moorings and intertidal vehicle use on seagrass meadows that reduce shoot density and cover can impact upon associated fauna. These impacts have negative consequences for the delivery of ecosystem services such as the provision of nursery habitat. PMID:26137432

Cyanobacterial composition and spatial distribution based on pyrosequencing data in the Gurbantunggut Desert, Northwestern China.

PubMed

Zhang, Bingchang; Li, Renhui; Xiao, Peng; Su, Yangui; Zhang, Yuanming

2016-03-01

Cyanobacteria are the primary colonizers and form a dominant component of soil photosynthetic communities in biological soil crusts. They are crucial in improving soil environments, namely accumulating soil carbon and nitrogen. Many classical studies have examined cyanobacterial diversity in desert crusts, but relatively few comprehensive molecular surveys have been conducted. We used 454 pyrosequencing of 16S rRNA to investigate cyanobacterial composition and distribution on regional scales in the Gurbantunggut Desert. The relationship between cyanobacterial distribution and environmental factors was also explored. A total of 24,973 cyanobacteria partial 16S rRNA gene sequences were obtained, and 507OTUs were selected, as most OTUs had very few reads. Among these, 347 OTU sequences were of cyanobacteria origin, belonging to Oscillatoriales, Nostocales, Chroococcales, and uncultured cyanobacterium clone, respectively. Microcoleus vaginatus, Chroococcidiopsis spp. and M. steenstrupii were the dominant species in most areas of the Gurbantunggut Desert. Compared with other desert, the Gurbantunggut Desert differed in the prominence of Chroococcidiopsis spp. and lack of Pseudanabaenales. Species composition and abundance of cyanobacteria also showed distinct variations. Soil texture, precipitation, and nutrients and salt levels affected cyanobacterial distribution. Increased precipitation was helpful in improving cyanobacterial diversity. A higher content of coarse sand promoted the colonization and growth of Oscillatoriales and some phylotypes of Chroococcales. The fine-textured soil with higher nutrients and salts supported more varied populations of cyanobacteria, namely some heterocystous cyanobacteria. The results suggested that the Gurbantunggut Desert was rich in cyanobacteria and that precipitation was a primary regulating factor for cyanobacterial composition on a regional scale. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Autumn larval fish assemblages in the northwest African Atlantic coastal zone

NASA Astrophysics Data System (ADS)

Abdelouahab, Hinde; Berraho, Amina; Baibai, Tarik; Agouzouk, Aziz; Makaoui, Ahmed; Errhif, Ahmed

2017-05-01

A study on the assemblage composition and vertical distribution of larval fish was conducted in the southern area of the Moroccan Atlantic coast in Autumn 2011. A total of 1 680 fish larvae taxa were identified from 21 families. The majority of the larvae were present in the upper layers. Clupeids were the most abundant larvae taxa followed by Myctophidae, Gadidae and Sparidae, hence the larval fish assemblages (LFA) were variable in diff erent depth layers. Total fish larvae showed a preference for surface layers, and were mainly found above 75 m depth, with some exceptions. The maximum concentration of fish larvae was concentrated up to 25 m essentially above the thermocline, where chlorophyll a and mesozooplankton were abundant. Spatially, neritic families were located near the coast and at some off shore stations especially in the northern part, while oceanic families were more distributed towards off shore along the study area. Cluster analysis showed a segregation of two groups of larvae. However, a clear separation between neritic families and oceanic families was not found. Multivariate analysis highlighted the relationship between the distribution of larvae of diff erent families and environmental parameters. Temperature and salinity seem to have been the factors that acted on associations of fish larvae. Day/night vertical distributions suggest there was not a very significant vertical migration, probably due to adequate light levels for feeding.

Composite microparticles of halloysite clay nanotubes bound by calcium carbonate.

PubMed

Jin, Yi; Yendluri, Raghuvara; Chen, Bin; Wang, Jingbo; Lvov, Yuri

2016-03-15

Natural halloysite clay nanotubes with 15 nm inner and 75 nm outer diameters have been used as vehicles for sustained release of drugs in composite hollow microparticles "glued" with CaCO3. We used a layer-by layer assembly accomplished alginate binding with Ca(2+) followed by CO2 bubbling to prepare the composite microspheres of CaCO3 and polyelectrolytes (PE) modified halloysite nanotubes (HNTs-PE2/CaCO3) with the diameter of about 5-10 μm. These microparticles have empty spherical structure and abundant pore distributions with maxima at 2.5, 3.9, 6.0 and 13.3 nm, and higher surface area of 82.3 m(2) g(-1) as characterized by SEM and BET test. We loaded drugs in these micro-nano carriers of tight piles of halloysite nanotube with end clogged with CaCO3. The sustained release of Nifedipine drug from HNTs-PE2/CaCO3 composite microspheres was slower than for pristine halloysite nanotubes. Copyright © 2015 Elsevier Inc. All rights reserved.

Nuclear abundance measurements inside MIR and ISS with Sileye experiments

NASA Astrophysics Data System (ADS)

Casolino, M.

In this work we present measurements of cosmic ray nuclear abundances above 150 MeV/n performed inside Mir space station between 1998 and 2000. Data have been obtained with SilEye-2 detector, a 6 plane silicon strip detector telescope designed to measure environmental radiation and investigate on the Light Flash phenomenon. In standalone mode, SilEye-2 is capable to measure LET distribution spectra and identify nuclear species with energy above 100 MeV/n: a total of 100 sessions comprising more than 1000 hours of observation were perfomed in the years 1998-2000, recording also several Solar Energetic Particle (SEP) events. Cosmic ray abundances inside a spacecraft can differ from the primary component due to interaction with the interposed material of the hull and the instruments. We report on LET measurements and relative abundances from Boron to Iron measured in different regions and at different geomagnetic cutoffs, in solar quiet conditions and during SEP events, showing how the composition varies in these different situations. We also report on preliminary results on cosmic ray measurements inside ISS (27/4/2002 - 4/5/2002) obtained with Sileye-3/Alteino experiment.

Chemical Composition of RM_1-390 - Large Magellanic Cloud Red Supergiant

NASA Astrophysics Data System (ADS)

Yushchenko, Alexander V.; Jeong, Yeuncheol; Gopka, Vira F.; Vasil`eva, Svetlana V.; Andrievsky, Sergey M.; Yushchenko, Volodymyr O.

2017-09-01

A high resolution spectroscopic observation of the red supergiant star RM_1-390 in the Large Magellanic Cloud was made from a 3.6 m telescope at the European Southern Observatory. Spectral resolving power was R=20,000, with a signal-to-noise ratio S/N > 100. We found the atmospheric parameters of RM_1-390 to be as follows: the effective temperature Teff = 4,250 ± 50 K, the surface gravity log g = 0.16 ± 0.1, the microturbulent velocity vmicro = 2.5 km/s, the macroturbulence velocity vmacro = 9 km/s and the iron abundance [Fe/H] = -0.73 ± 0.11. The abundances of 18 chemical elements from silicon to thorium in the atmosphere of RM_1-390 were found using the spectrum synthesis method. The relative deficiencies of all elements are close to that of iron. The fit of abundance pattern by the solar system distribution of r- and s-element isotopes shows the importance of the s-process. The plot of relative abundances as a function of second ionization potentials of corresponding chemical elements allows us to find a possibility of convective energy transport in the photosphere of RM_1-390.

Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea.

PubMed

Wemheuer, Bernd; Wemheuer, Franziska; Meier, Dimitri; Billerbeck, Sara; Giebel, Helge-Ansgar; Simon, Meinhard; Scherber, Christoph; Daniel, Rolf

2017-11-05

Deciphering the ecological traits of abundant marine bacteria is a major challenge in marine microbial ecology. In the current study, we linked compositional and functional predictions to elucidate such traits for abundant bacterioplankton lineages in the North Sea. For this purpose, we investigated entire and active bacterioplankton composition along a transect ranging from the German Bight to the northern North Sea by pyrotag sequencing of bacterial 16S rRNA genes and transcripts. Functional profiles were inferred from 16S rRNA data using Tax4Fun. Bacterioplankton communities were dominated by well-known marine lineages including clusters/genera that are affiliated with the Roseobacter group and the Flavobacteria . Variations in community composition and function were significantly explained by measured environmental and microbial properties. Turnover of dissolved free amino acids (DFAA) showed the strongest correlation to community composition and function. We applied multinomial models, which enabled us to identify bacterial lineages involved in DFAA turnover. For instance, the genus Planktomarina was more abundant at higher DFAA turnover rates, suggesting its vital role in amino acid degradation. Functional predictions further indicated that Planktomarina is involved in leucine and isoleucine degradation. Overall, our results provide novel insights into the biogeochemical significance of abundant bacterioplankton lineages in the North Sea.

Mineralogical Characterization of Fe-Bearing AGB and Supernova Silicate Grains From the Queen Alexandra Range 99177 Meteorite

NASA Technical Reports Server (NTRS)

Nguyen, A. N.; Keller, L. P.; Messenger, S.; Rahman, Z.

2017-01-01

Spectroscopic observations of the circumstellar envelopes of evolved O-rich stars indicate the dust is mostly amorphous silicate with olivine-like compositions. Spectral modeling suggests these grains are Fe-rich [Mg/(Mg+Fe) 0.5], but it is not known whether the Fe is distributed within the silicate matrix or exists as metal inclusions. In contrast, the crystalline silicates are inferred to be extremely Mg-rich [Mg/(Mg+Fe) > 0.95]. The mineralogies and chemical compositions of dust in supernova (SN) remnants are not as well constrained, but abundant silicates of olivine-like and enstatite-like compositions have been fit to the infrared emission features. Silicates in the interstellar medium (ISM) are >99% amor-phous and Fe-bearing. The dearth of crystalline silicates in the ISM requires that some amorphization or destruction mechanisms process these grains.

Magnesian anorthosites and associated troctolites and dunite in Apollo 14 breccias

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lindstrom, M.M.; Knapp, S.A.

1984-11-15

Magnesian anorthosite, a new type of pristine lunar highlands rock, has been found in Apollo 14 breccias. It has primitive (high Ca and Mg) silicate mineral compositions, and high and variable REE concentrations. Variations in REE contents can be accounted for by variations in modal abundance of REE-rich apatite. Magnesian anorthosites are associated with troctolites and a dunite with very similar mineral compositions and it is suggested that all crystallized from a differentiated troctolitic intrusion. The origin of the REE-rich apatite is enigmatic. It is unlikely to have crystallized from an igneous liquid in equilibrium with the major minerals inmore » the anorthosite. Possible origins are assimilation of urKREEP or metasomatism by REE-rich fluids. REE-rich alkali anorthosites and gabbronorites are also found and are likely to be related to KREEP basalt magmas. Lunar compositional associations are distributed in a regional rather than global manner.« less

Reduction and analysis of seasons 15 and 16 (1991 - 1992) Pioneer Venus radio occultation data and correlative studies with observations of the near-infrared emission of Venus

NASA Technical Reports Server (NTRS)

Jenkins, Jon M.

1992-01-01

Radio occultation experiments, and radio astronomical observations have suggested that significant variations (both spatial and temporal) in the abundances of sulfur-bearing gases are occurring below the Venus cloud layers. In addition, recent Near Infra-Red images of the nightside of Venus revealed large-scale features which sustain their shape over multiple rotations (the rotation periods of the features are 6.0 +/- 0.5 days). Presumably, the contrast variations in the NIR images are caused by variations in the abundance of large particles in the cloud deck. If these particles are composed of liquid sulfuric acid, one would expect a strong anticorrelation between regions with a high abundance of sulfuric acid vapor, and regions where there are large particles. One technique for monitoring the abundance and distribution of sulfuric acid vapor (H2SO4) at and below the main Venus cloud layer (altitudes below 50 km) is to measure the 13-cm wavelength opacity using Pioneer Venus Orbiter Radio Occultation Studies (PV-ORO). We are working to characterize variations in the abundance and distribution of subcloud H2SO4(g) in the Venus atmosphere by using a number of 13-cm radio occultation measurements conducted with the Pioneer Venus Orbiter near the inferior conjunction of 1991. When retrieved, the vertical profiles of the abundance of H2SO4(g) will be compared and correlated with NIR images of the night side of Venus made during the same period of time. Hopefully, the combination of these two different types of data will make it possible to constrain or identify the composition of the large particles causing the features observed in the NIR images. Considered on their own, however, the parameters retrieved from the radio occultation experiments are valuable science products.

Zircon age-temperature-compositional spectra in plutonic rocks

DOE PAGES

Samperton, Kyle M.; Bell, Elizabeth A.; Barboni, Mélanie; ...

2017-08-23

We present that geochronology can resolve dispersed zircon dates in plutonic rocks when magma cooling time scales exceed the temporal precision of individual U-Pb analyses; such age heterogeneity may indicate protracted crystallization between the temperatures of zircon saturation (T sat) and rock solidification (T solid). Diffusive growth models predict asymmetric distributions of zircon dates and crystallization temperatures in a cooling magma, with volumetrically abundant old, hot crystallization at T sat decreasing continuously to volumetrically minor young, cold crystallization at T solid. We present integrated geochronological and geochemical data from Bergell Intrusion tonalites (Central Alps, Europe) that document zircon compositional changemore » over hundreds of thousands of years at the hand-sample scale, indicating melt compositional evolution during solidification. Ti-in-zircon thermometry, crystallization simulation using MELTS software, and U-Pb dates produce zircon mass-temperature-time distributions that are in excellent agreement with zircon growth models. In conclusion, these findings provide the first quantitative validation of longstanding expectations from zircon saturation theory by direct geochronological investigation, underscoring zircon’s capacity to quantify supersolidus cooling rates in magmas and resolve dynamic differentiation histories in the plutonic rock record.« less

The influence of climate on species distribution over time and space during the late Quaternary

NASA Astrophysics Data System (ADS)

Carotenuto, F.; Di Febbraro, M.; Melchionna, M.; Castiglione, S.; Saggese, F.; Serio, C.; Mondanaro, A.; Passaro, F.; Loy, A.; Raia, P.

2016-10-01

Understanding the effect of climate on the composition of communities and its change over time and space is one of the major aims in ecology and paleoecology. Herein, we tackled on this issue by studying late Quaternary large mammal paleocommunities of Eurasia. The late Quaternary was a period of strong environmental instability, especially characterized by the occurrence of the last glacial maximum (LGM). We used community phylogenetics and joint species distribution models in order to understand the factors determining paleocommunity composition in the late Quaternary. Our results support the existence of strong climatic selection operating on the LGM fauna, both through the disappearance of warm-adapted species such as Elephas antiquus, Hippopothamus amphibious, and Stephanorhinus hemitoechus, and by setting the stage for the existence of a community characterized by cold-adapted large mammals. Patterns of abundance in the fossil record, co-occurrence between species pairs, and the extent of climatic forcing on faunal composition, differ between paleocommunities, but not between extinct and extant species, which is consistent with the idea that climate change, rather than the presence of humans, exerted a major effect on the survival of the late Quaternary megafauna.

Zircon age-temperature-compositional spectra in plutonic rocks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Samperton, Kyle M.; Bell, Elizabeth A.; Barboni, Mélanie

We present that geochronology can resolve dispersed zircon dates in plutonic rocks when magma cooling time scales exceed the temporal precision of individual U-Pb analyses; such age heterogeneity may indicate protracted crystallization between the temperatures of zircon saturation (T sat) and rock solidification (T solid). Diffusive growth models predict asymmetric distributions of zircon dates and crystallization temperatures in a cooling magma, with volumetrically abundant old, hot crystallization at T sat decreasing continuously to volumetrically minor young, cold crystallization at T solid. We present integrated geochronological and geochemical data from Bergell Intrusion tonalites (Central Alps, Europe) that document zircon compositional changemore » over hundreds of thousands of years at the hand-sample scale, indicating melt compositional evolution during solidification. Ti-in-zircon thermometry, crystallization simulation using MELTS software, and U-Pb dates produce zircon mass-temperature-time distributions that are in excellent agreement with zircon growth models. In conclusion, these findings provide the first quantitative validation of longstanding expectations from zircon saturation theory by direct geochronological investigation, underscoring zircon’s capacity to quantify supersolidus cooling rates in magmas and resolve dynamic differentiation histories in the plutonic rock record.« less

Parallel structure among environmental gradients and three trophic levels in a subarctic estuary

USGS Publications Warehouse

Speckman, Suzann G.; Piatt, John F.; Minte-Vera, C. V.; Parrish, Julia K.

2005-01-01

We assessed spatial and temporal variability in the physical environment of a subarctic estuary, and examined concurrent patterns of chlorophyll α abundance (fluorescence), and zooplankton and forage fish community structure. Surveys were conducted in lower Cook Inlet, Alaska, during late July and early August from 1997 through 1999. Principle components analysis (PCA) revealed that spatial heterogeneity in the physical oceanographic environment of lower Cook Inlet could be modeled as three marine-estuarine gradients characterized by temperature, salinity, bottom depth, and turbidity. The gradients persisted from 1997 through 1999, and PCA explained 68% to 92% of the variance in physical oceanography for each gradient-year combination. Correlations between chlorophyll α abundance and distribution and the PCA axes were weak. Chlorophyll was reduced by turbidity, and low levels occurred in areas with high levels of suspended sediments. Detrended correspondence analysis (DCA) was used to order the sample sites based on species composition and to order the zooplankton and forage fish taxa based on similarities among sample sites for each gradient-year. Correlations between the structure of the physical environment (PCA axis 1) and zooplankton community structure (DCA axis 1) were strong (r = 0.43-0.86) in all years for the three marine-estuarine gradients, suggesting that zooplankton community composition was structured by the physical environment. The physical environment (PCA) and forage fish community structure (DCA) were weakly correlated in all years along Gradient 2, defined by halocline intensity and surface temperature and salinity, even though these physical variables were more important for defining zooplankton habitats. However, the physical environment (PCA) and forage fish community structure (DCA) were strongly correlated along the primary marine-estuarine gradient (#1) in 1997 (r = 0.87) and 1998 (r = 0.82). The correlation was poor (r = 0.32) in 1999, when fish community structure changed markedly in lower Cook Inlet. Capelin (Mallotus villosus), walleye pollock (Theragra chalcogramma), and arrowtooth flounder (Atheresthes stomias) were caught farther north than in previous years. Waters were significantly colder and more saline in 1999, a La Nina year, than in other years of the study. Interannual fluctuations in environmental conditions in lower Cook Inlet did not have substantial effects on zooplankton community structure, although abundance of individual taxa varied significantly. The abundance and distribution of chlorophyll α, zooplankton and forage fish were affected much more by spatial variability in physical oceanography than by interannual variability. Our examination of physical-biological linkages in lower Cook Inlet supports the concept of "bottom-up control," i.e., that variability in the physical environment structures higher trophic-level communities by influencing their distribution and abundance across space.

Parallel structure among environmental gradients and three trophic levels in a subarctic estuary

NASA Astrophysics Data System (ADS)

Speckman, Suzann G.; Piatt, John F.; Minte-Vera, Carolina V.; Parrish, Julia K.

2005-07-01

We assessed spatial and temporal variability in the physical environment of a subarctic estuary, and examined concurrent patterns of chlorophyll α abundance (fluorescence), and zooplankton and forage fish community structure. Surveys were conducted in lower Cook Inlet, Alaska, during late July and early August from 1997 through 1999. Principle components analysis (PCA) revealed that spatial heterogeneity in the physical oceanographic environment of lower Cook Inlet could be modeled as three marine-estuarine gradients characterized by temperature, salinity, bottom depth, and turbidity. The gradients persisted from 1997 through 1999, and PCA explained 68% to 92% of the variance in physical oceanography for each gradient-year combination. Correlations between chlorophyll α abundance and distribution and the PCA axes were weak. Chlorophyll was reduced by turbidity, and low levels occurred in areas with high levels of suspended sediments. Detrended correspondence analysis (DCA) was used to order the sample sites based on species composition and to order the zooplankton and forage fish taxa based on similarities among sample sites for each gradient-year. Correlations between the structure of the physical environment (PCA axis 1) and zooplankton community structure (DCA axis 1) were strong ( r = 0.43-0.86) in all years for the three marine-estuarine gradients, suggesting that zooplankton community composition was structured by the physical environment. The physical environment (PCA) and forage fish community structure (DCA) were weakly correlated in all years along Gradient 2, defined by halocline intensity and surface temperature and salinity, even though these physical variables were more important for defining zooplankton habitats. However, the physical environment (PCA) and forage fish community structure (DCA) were strongly correlated along the primary marine-estuarine gradient (#1) in 1997 ( r = 0.87) and 1998 ( r = 0.82). The correlation was poor ( r = 0.32) in 1999, when fish community structure changed markedly in lower Cook Inlet. Capelin ( Mallotus villosus), walleye pollock ( Theragra chalcogramma), and arrowtooth flounder ( Atheresthes stomias) were caught farther north than in previous years. Waters were significantly colder and more saline in 1999, a La Niña year, than in other years of the study. Interannual fluctuations in environmental conditions in lower Cook Inlet did not have substantial effects on zooplankton community structure, although abundance of individual taxa varied significantly. The abundance and distribution of chlorophyll α, zooplankton and forage fish were affected much more by spatial variability in physical oceanography than by interannual variability. Our examination of physical-biological linkages in lower Cook Inlet supports the concept of “bottom-up control,” i.e., that variability in the physical environment structures higher trophic-level communities by influencing their distribution and abundance across space.

Biogeography and Photosynthetic Biomass of Arctic Marine Pico-Eukaroytes during Summer of the Record Sea Ice Minimum 2012

PubMed Central

Metfies, Katja; von Appen, Wilken-Jon; Kilias, Estelle; Nicolaus, Anja; Nöthig, Eva-Maria

2016-01-01

Information on recent photosynthetic biomass distribution and biogeography of Arctic marine pico-eukaryotes (0.2–3 μm) is needed to better understand consequences of environmental change for Arctic marine ecosystems. We analysed pico-eukaryote biomass and community composition in Fram Strait and large parts of the Central Arctic Ocean (Nansen Basin, Amundsen Basin) using chlorophyll a (Chl a) measurements, automated ribosomal intergenic spacer analysis (ARISA) and 454-pyrosequencing. Samples were collected during summer 2012, the year with the most recent record sea ice minimum. Chl a concentrations were highest in eastern Fram Strait and pico-plankton accounted for 60–90% of Chl a biomass during the observation period. ARISA-patterns and 454-pyrosequencing revealed that pico-eukaryote distribution is closely related to water mass distribution in the euphotic zone of the Arctic Ocean. Phaeocystaceae, Micromonas sp., Dinophyceae and Syndiniales constitute a high proportion of sequence reads, while sequence abundance of autotrophic Phaeocystaceae and mixotrophic Micromonas sp. was inversely correlated. Highest sequence abundances of Phaeocystaceae were observed in the warm Atlantic Waters in Fram Strait, while Micromonas sp. dominated the abundant biosphere in the arctic halocline. Our results are of particular interest considering existing hypotheses that environmental conditions in Nansen Basin might become more similar to the current conditions in Fram Strait. We propose that in response, biodiversity and biomass of pico-eukaryotes in Nansen Basin could resemble those currently observed in Fram Strait in the future. This would significantly alter biogeochemical cycles in a large part of the Central Arctic Ocean. PMID:26895333

Distribution of planktonic cnidarians in response to South Atlantic Central Water intrusion in the South Brazilian Bight

NASA Astrophysics Data System (ADS)

Nogueira Júnior, Miodeli; Brandini, Frederico P.; Codina, Juan C. U.

2014-10-01

Five oceanographic cruises were made between November 2005 and June 2006, sampling a cross-shelf transect off the South Brazilian Bight (SBB; 26°46‧S) to follow the seasonal development of the South Atlantic Central Water (SACW) intrusion over the shelf and its influence on the assemblage of planktonic cnidarians. An onshore wind-driven bottom intrusion of the SACW was clearly perceptible, reaching the coast in January. From March onward, the SACW influence was gradually displaced seaward due to wind and tidal mixing. By late June the SACW influence was offshore and the inshore was dominated by low-salinity waters (<34.5). The abundance, distribution, and general taxonomic composition of both medusae and siphonophores were strongly influenced by the onshore intrusion of the SACW. An inshore-offshore gradient was clear. The Canonical Correspondence Analysis suggested that coastal species - dominated by Liriope tetraphylla, actinula larvae and Muggiaea kochi - were mostly related to food availability and a vertically mixed environment inshore, and their abundance and extent were reduced during intrusion periods. In contrast, species with offshore affinities tended to increase their abundance and distribution during intrusion periods, and were mostly related to the presence of thermal stratification and a deep chlorophyll maximum layer. Most of these offshore species, such as Aglaura hemistoma, Rhopalonema velatum and many calycophorans, are associated with the warm upper layer. However, high concentrations of large (>20 mm in diameter) Solmaris corona were observed exclusively in cold waters, suggesting this medusa is a SACW indicator.

Spatial patterns of distribution and abundance of Harrisia portoricensis, an endangered Caribbean cactus

Treesearch

J. Rojas-Sandoval; E. J. Melendez-Ackerman; NO-VALUE

2013-01-01

Aims The spatial distribution of biotic and abiotic factors may play a dominant role in determining the distribution and abundance of plants in arid and semiarid environments. In this study, we evaluated how spatial patterns of microhabitat variables and the degree of spatial dependence of these variables influence the distribution and abundance of the endangered...

[Ichthyofauna of karstic wetlands under anthropic impact: the "petenes" of Campeche, Mexico].

PubMed

Torres-Castro, Ivette Liliana; Vega-Cendejas, María Eugenia; Schmitter-Soto, Juan Jacobo; Palacio-Aponte, Gerardo; Rodiles-Hernández, Rocío

2009-01-01

"Petenes" are small springs and associated streams that drain into wetlands near the coast in karstic areas. We studied composition, distribution, and abundance of the ichthyofauna in Los Petenes region (northwest Campeche). Two petenes displaying different degrees and types of anthropic impact were selected, Hampolol and El Remate. Hampolol has a smaller area but a longer derived stream; it is located within a protected area, but has been invaded by tilapia. El Remate is a popular spa, with no tilapia; it has a larger area but a shorter derived stream. At each "petén", several sites in the main spring, the associated stream, and secondary (temporary) springs were sampled in the rainy and dry seasons. Fishing gear was variable (throw net, gill net, small and large seine nets), but effort was uniform. We recorded temperature, dissolved oxygen, salinity, and depth at each site and season; also, we noted the different types and intensities of anthropic impact (channelization, presence of exotic species, recreational use, etc.) at each petén. We compared the petenes in terms of their environmental quality and fish fauna (composition, distribution, abundance, biomass); we also tested for effects of season and site within each petén. The study found 27 species of fishes, included in 18 genera and eight families, 24 species in Hampolol and 20 in El Remate. The geographical range of 'Cichlasoma' salvini, Rivulus tenuis, Phallichthys fairweatheri, Xiphophorus hellerii, and X maculatus is extended. The dominant species in both seasons was Astyanax (probable hybrids A. aeneus x altior at Hampolol, pure A. altior at El Remate), which contributed most of the abundance and biomass, together with Vieja synspila and Poecilia velifera. A significantly greater overall diversity (H'n=3.31) was recorded in Hampolol compared to El Remate (H'n=2.10). Cluster analysis of sites by species presence allowed distinction of two groupings within each petén: permanent waters (i.e., main spring, stream) vs. temporary sites (secondary springs, which dry out in winter). Environmental parameters (except salinity) presented significant differences by site and season; a canonical correspondence analysis indicated that the distribution of fish assemblages was influenced by the environmental parameters in both seasons. In terms of composition, historical factors play a role in the differences between the fish assemblages of the two petenes, especially concerning the presence of Astyanax hybrids and Xiphophorus spp. in the southern petén (Hampolol) and Poecilia velifera in the northern petén (El Remate).

Coccolithophore populations and their contribution to carbonate export during an annual cycle in the Australian sector of the Antarctic zone

NASA Astrophysics Data System (ADS)

Rigual Hernández, Andrés S.; Flores, José A.; Sierro, Francisco J.; Fuertes, Miguel A.; Cros, Lluïsa; Trull, Thomas W.

2018-03-01

The Southern Ocean is experiencing rapid and relentless change in its physical and biogeochemical properties. The rate of warming of the Antarctic Circumpolar Current exceeds that of the global ocean, and the enhanced uptake of carbon dioxide is causing basin-wide ocean acidification. Observational data suggest that these changes are influencing the distribution and composition of pelagic plankton communities. Long-term and annual field observations on key environmental variables and organisms are a critical basis for predicting changes in Southern Ocean ecosystems. These observations are particularly needed, since high-latitude systems have been projected to experience the most severe impacts of ocean acidification and invasions of allochthonous species. Coccolithophores are the most prolific calcium-carbonate-producing phytoplankton group playing an important role in Southern Ocean biogeochemical cycles. Satellite imagery has revealed elevated particulate inorganic carbon concentrations near the major circumpolar fronts of the Southern Ocean that can be attributed to the coccolithophore Emiliania huxleyi. Recent studies have suggested changes during the last decades in the distribution and abundance of Southern Ocean coccolithophores. However, due to limited field observations, the distribution, diversity and state of coccolithophore populations in the Southern Ocean remain poorly characterised. We report here on seasonal variations in the abundance and composition of coccolithophore assemblages collected by two moored sediment traps deployed at the Antarctic zone south of Australia (2000 and 3700 m of depth) for 1 year in 2001-2002. Additionally, seasonal changes in coccolith weights of E. huxleyi populations were estimated using circularly polarised micrographs analysed with C-Calcita software. Our findings indicate that (1) coccolithophore sinking assemblages were nearly monospecific for E. huxleyi morphotype B/C in the Antarctic zone waters in 2001-2002; (2) coccoliths captured by the traps experienced weight and length reduction during summer (December-February); (3) the estimated annual coccolith weight of E. huxleyi at both sediment traps (2.11 ± 0.96 and 2.13 ± 0.91 pg at 2000 and 3700 m) was consistent with previous studies for morphotype B/C in other Southern Ocean settings (Scotia Sea and Patagonian shelf); and (4) coccolithophores accounted for approximately 2-5 % of the annual deep-ocean CaCO3 flux. Our results are the first annual record of coccolithophore abundance, composition and degree of calcification in the Antarctic zone. They provide a baseline against which to monitor coccolithophore responses to changes in the environmental conditions expected for this region in coming decades.

Use of a fishery-independent trawl survey to evaluate distribution patterns of subadult sharks in Georgia

USGS Publications Warehouse

Belcher, C.N.; Jennings, Cecil A.

2009-01-01

We investigated the utility of a fishery-independent trawl survey for assessing a potential multispecies shark nursery in Georgia's nearshore and inshore waters. A total of 234 subadult sharks from six species were captured during 85 of 216 trawls. Catch rates and size distributions for subadult sharks and the ratio of neonates to juveniles were consistent among areas. The highest concentrations of subadult sharks occurred in creeks and sounds. Species composition varied among areas. The Atlantic sharpnose shark Rhizoprionodon terraenovae was the most abundant species in sound and nearshore stations, whereas the bonnethead Sphyrna tiburo was the most abundant species in creeks. The aggregate of other species occurred with higher frequency in the sounds and nearshore. Sampling characteristics of the trawl survey were compared with those from a fishery-independent longline survey of subadult sharks to assess the similarity of the two gears. A total of 193 subadult sharks from seven species were captured during 57 of 96 longline sets, whereas 52 subadults from four species were captured during 20 of 48 trawls. Selectivity and efficiency differed between the two gears. The trawl had lower catch rates, caught smaller sharks, and encountered a different suite of species than the longline. General seasonal trends in relative abundance also differed between the two gears; the longline showed an increasing trend in abundance, whereas the trawl showed a stable trend. Although trawls were not found to be efficient for sampling subadult sharks from most species, they can be a useful source of supplemental data.

The Chemical Composition of NGC 5824, a Globular Cluster without Iron Spread but with an Extreme Mg–Al Anticorrelation

NASA Astrophysics Data System (ADS)

Mucciarelli, Alessio; Lapenna, Emilio; Ferraro, Francesco R.; Lanzoni, Barbara

2018-05-01

NGC 5824 is a massive Galactic globular cluster suspected to have an intrinsic spread in its iron content, according to the strength of the calcium triplet lines. We present chemical abundances of 117 cluster giant stars using high-resolution spectra acquired with the multi-object spectrograph FLAMES. The metallicity distribution of 87 red giant branch stars is peaked at [Fe/H] = ‑2.11 ± 0.01 dex, while that derived from 30 asymptotic giant branch stars is peaked at [Fe/H] = ‑2.20 ± 0.01 dex. Both the distributions are compatible with a null spread, indicating that this cluster did not retain the ejecta of supernovae. The small iron abundance offset between the two groups of stars is similar to the abundances already observed among red and asymptotic giant branch stars in other clusters. The lack of intrinsic iron spread rules out the possibility that NGC 5824 is the remnant of a disrupted dwarf galaxy, as previously suggested. We also find evidence of the chemical anomalies usually observed in globular clusters, namely the Na–O and the Mg–Al anticorrelations. In particular, NGC 5824 exhibits a huge range of [Mg/Fe] abundance, observed in only a few metal-poor and/or massive clusters. We conclude that NGC 5824 is a normal globular cluster, without spread in [Fe/H] but with an unusually large spread in [Mg/Fe], possibly due to an efficient self-enrichment driven by massive asymptotic giant branch stars. Based on observations collected at the ESO-VLT under the program 095.D-0290.

Changes in the Floating Plastic Pollution of the Mediterranean Sea in Relation to the Distance to Land.

PubMed

Pedrotti, Maria Luiza; Petit, Stéphanie; Elineau, Amanda; Bruzaud, Stéphane; Crebassa, Jean-Claude; Dumontet, Bruno; Martí, Elisa; Gorsky, Gabriel; Cózar, Andrés

2016-01-01

The composition, size distribution, and abundance of floating plastic debris in surface waters of the Mediterranean Sea were analyzed in relation to distance to land. We combined data from previously published reports with an intensive sampling in inshore waters of the Northwestern Mediterranean. The highest plastic concentrations were found in regions distant from from land as well as in the first kilometer adjacent to the coastline. In this nearshore water strip, plastic concentrations were significantly correlated with the nearness to a coastal human population, with local areas close to large human settlements showing hundreds of thousands of plastic pieces per km2. The ratio of plastic to plankton abundance reached particularly high values for the coastal surface waters. Polyethylene, polypropylene and polyamides were the predominant plastic polymers at all distances from coast (86 to 97% of total items), although the diversity of polymers was higher in the 1-km coastal water strip due to a higher frequency of polystyrene or polyacrylic fibers. The plastic size distributions showed a gradual increase in abundance toward small sizes indicating an efficient removal of small plastics from the surface. Nevertheless, the relative abundance of small fragments (< 2 mm) was higher within the 1-km coastal water strip, suggesting a rapid fragmentation down along the shoreline, likely related with the washing ashore on the beaches. This study constitutes a first attempt to determine the impact of plastic debris in areas closest to Mediterranean coast. The presence of a high concentration of plastic including tiny plastic items could have significant environmental, health and economic impacts.

Changes in the Floating Plastic Pollution of the Mediterranean Sea in Relation to the Distance to Land

PubMed Central

Petit, Stéphanie; Elineau, Amanda; Bruzaud, Stéphane; Crebassa, Jean-Claude; Dumontet, Bruno; Martí, Elisa; Gorsky, Gabriel; Cózar, Andrés

2016-01-01

The composition, size distribution, and abundance of floating plastic debris in surface waters of the Mediterranean Sea were analyzed in relation to distance to land. We combined data from previously published reports with an intensive sampling in inshore waters of the Northwestern Mediterranean. The highest plastic concentrations were found in regions distant from from land as well as in the first kilometer adjacent to the coastline. In this nearshore water strip, plastic concentrations were significantly correlated with the nearness to a coastal human population, with local areas close to large human settlements showing hundreds of thousands of plastic pieces per km2. The ratio of plastic to plankton abundance reached particularly high values for the coastal surface waters. Polyethylene, polypropylene and polyamides were the predominant plastic polymers at all distances from coast (86 to 97% of total items), although the diversity of polymers was higher in the 1-km coastal water strip due to a higher frequency of polystyrene or polyacrylic fibers. The plastic size distributions showed a gradual increase in abundance toward small sizes indicating an efficient removal of small plastics from the surface. Nevertheless, the relative abundance of small fragments (< 2 mm) was higher within the 1-km coastal water strip, suggesting a rapid fragmentation down along the shoreline, likely related with the washing ashore on the beaches. This study constitutes a first attempt to determine the impact of plastic debris in areas closest to Mediterranean coast. The presence of a high concentration of plastic including tiny plastic items could have significant environmental, health and economic impacts. PMID:27556233

Multiple factors affect diversity and abundance of ammonia-oxidizing microorganisms in iron mine soil.

PubMed

Xing, Yi; Si, Yan-Xiao; Hong, Chen; Li, Yang

2015-07-01

Ammonia oxidation by microorganisms is a critical process in the nitrogen cycle. In this study, four soil samples collected from a desert zone in an iron-exploration area and others from farmland and planted forest soil in an iron mine surrounding area. We analyzed the abundance and diversity of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in iron-mining area near the Miyun reservoir using ammonia monooxygenase. A subunit gene (amoA) as molecular biomarker. Quantitative polymerase chain reaction was applied to explore the relationships between the abundance of AOA and AOB and soil physicochemical parameters. The results showed that AOA were more abundant than AOB and may play a more dominant role in the ammonia-oxidizing process in the whole region. PCR-denaturing gradient gel electrophoresis was used to analyze the structural changes of AOA and AOB. The results showed that AOB were much more diverse than AOA. Nitrosospira cluster three constitute the majority of AOB, and AOA were dominated by group 1.1b in the soil. Redundancy analysis was performed to explore the physicochemical parameters potentially important to AOA and AOB. Soil characteristics (i.e. water, ammonia, organic carbon, total nitrogen, available phosphorus, and soil type) were proposed to potentially contribute to the distributions of AOB, whereas Cd was also closely correlated to the distributions of AOB. The community of AOA correlated with ammonium and water contents. These results highlight the importance of multiple drivers in microbial niche formation as well as their affect on ammonia oxidizer composition, both which have significant consequences for ecosystem nitrogen functioning.

High Pressure/Temperature Metal Silicate Partitioning of Tungsten

NASA Technical Reports Server (NTRS)

Shofner, G. A.; Danielson, L.; Righter, K.; Campbell, A. J.

2010-01-01

The behavior of chemical elements during metal/silicate segregation and their resulting distribution in Earth's mantle and core provide insight into core formation processes. Experimental determination of partition coefficients allows calculations of element distributions that can be compared to accepted values of element abundances in the silicate (mantle) and metallic (core) portions of the Earth. Tungsten (W) is a moderately siderophile element and thus preferentially partitions into metal versus silicate under many planetary conditions. The partitioning behavior has been shown to vary with temperature, silicate composition, oxygen fugacity, and pressure. Most of the previous work on W partitioning has been conducted at 1-bar conditions or at relatively low pressures, i.e. <10 GPa, and in two cases at or near 20 GPa. According to those data, the stronger influences on the distribution coefficient of W are temperature, composition, and oxygen fugacity with a relatively slight influence in pressure. Predictions based on extrapolation of existing data and parameterizations suggest an increased pressured dependence on metal/ silicate partitioning of W at higher pressures 5. However, the dependence on pressure is not as well constrained as T, fO2, and silicate composition. This poses a problem because proposed equilibration pressures for core formation range from 27 to 50 GPa, falling well outside the experimental range, therefore requiring exptrapolation of a parametereized model. Higher pressure data are needed to improve our understanding of W partitioning at these more extreme conditions.

Isotopic Compositions of the Elements, 2001

NASA Astrophysics Data System (ADS)

Böhlke, J. K.; de Laeter, J. R.; De Bièvre, P.; Hidaka, H.; Peiser, H. S.; Rosman, K. J. R.; Taylor, P. D. P.

2005-03-01

The Commission on Atomic Weights and Isotopic Abundances of the International Union of Pure and Applied Chemistry completed its last review of the isotopic compositions of the elements as determined by isotope-ratio mass spectrometry in 2001. That review involved a critical evaluation of the published literature, element by element, and forms the basis of the table of the isotopic compositions of the elements (TICE) presented here. For each element, TICE includes evaluated data from the "best measurement" of the isotope abundances in a single sample, along with a set of representative isotope abundances and uncertainties that accommodate known variations in normal terrestrial materials. The representative isotope abundances and uncertainties generally are consistent with the standard atomic weight of the element Ar(E) and its uncertainty U[Ar(E)] recommended by CAWIA in 2001.

Spatial and Temporal Distribution of Non-Biting Midge Larvae Assemblages in Streams in a Mountainous Region in Southern Brazil

PubMed Central

Floss, Elzira Cecília Serafini; Secretti, Elisangela; Kotzian, Carla Bender; Spies, Marcia Regina; Pires, Mateus Marques

2013-01-01

The spatial and temporal structure of non-biting midge (Diptera: Chironomidae) larvae assemblages and some environmental factors that affect their distribution were analyzed in a montane river and its tributaries in a temperate climate region of southernmost Brazil. In total, 69 taxa were recorded after four seasonal samplings (winter, spring, summer, and autumn). The dominant taxa were Rheotanytarsus sp. 1, Rheotanytarsus sp. 2, Cricotopus sp. 2, and Polypedilum (Polypedilum) sp., although dominance varied among the four sampling sites. The variations in dominance, abundance, and richness among the different sites were affected by environmental characteristics, such as the presence of marginal vegetation and a heterogeneous substratum, and also by human activities. Strictly environmental factors, such as altitude, and factors related to annual weather patterns, such as mean temperature and precipitation, influenced the spatial and temporal distribution of certain taxa and the structure of faunal assemblages. The influence of the riparian vegetation and riverbed heterogeneity on the composition, richness, and abundance of the chironomid larvae assemblages indicates that human activities, such as deforestation and the construction of dams, constitute a serious threat to the conservation of these insects and to the fauna that depends on them for food. PMID:24784953

Vertical distributions and diel migrations of Euthecosomata in the northwest Sargasso Sea

NASA Astrophysics Data System (ADS)

Wormuth, John H.

1981-12-01

Vertical distributions and seasonal variations in abundance of nine abundant or frequent pteropod species or subspecies in the northwest Sargasso Sea are described. Factor analyses yielded two groups, diel migrators and non-migrators. In terms of water column abundances, tows taken in August and November are similar, as are tows in December and April. Most species show significant within-species agreement in depth distribution over the year but high variability in abundance. Regression analyses using environmental parameters as independent variables show significant correlations of species abundances with temperature.

Effect of different levels of nitrogen on rhizosphere bacterial community structure in intensive monoculture of greenhouse lettuce.

PubMed

Li, Jian-Gang; Shen, Min-Chong; Hou, Jin-Feng; Li, Ling; Wu, Jun-Xia; Dong, Yuan-Hua

2016-04-28

Pyrosequencing-based analyses revealed significant effects among low (N50), medium (N80), and high (N100) fertilization on community composition involving a long-term monoculture of lettuce in a greenhouse in both summer and winter. The non-fertilized control (CK) treatment was characterized by a higher relative abundance of Actinobacteria, Acidobacteria, and Chloroflexi; however, the average abundance of Firmicutes typically increased in summer, and the relative abundance of Bacteroidetes increased in winter in the N-fertilized treatments. Principle component analysis showed that the distribution of the microbial community was separated by a N gradient with N80 and N100 in the same group in the summer samples, while CK and N50 were in the same group in the winter samples, with the other N-level treatments existing independently. Redundancy analysis revealed that available N, NO3(-)-N, and NH4(+)-N, were the main environmental factors affecting the distribution of the bacterial community. Correlation analysis showed that nitrogen affected the shifts of microbial communities by strongly driving the shifts of Firmicutes, Bacteroidetes, and Proteobacteria in summer samples, and Bacteroidetes, Actinobacteria, and Acidobacteria in winter samples. The study demonstrates a novel example of rhizosphere bacterial diversity and the main factors influencing rizosphere microbial community in continuous vegetable cropping within an intensive greenhouse ecosystem.

Habitat fragmentation effects on the orchid bee communities in remnant forests of southeastern Brazil.

PubMed

Knoll, Fátima do Rosário Naschenveng; Penatti, N C

2012-10-01

The effect of habitat fragmentation on the structure of orchid bee communities was analyzed by the investigation of the existence of a spatial structure in the richness and abundance of Euglossini species and by determining the relationship between these data and environmental factors. The surveys were carried out in four different forest fragments and one university campus. Richness, abundance, and diversity of species were analyzed in relation to abiotic (size of the area, extent of the perimeter, perimeter/area ratio, and shape index) and biotic characteristics (vegetation index of the fragment and of the matrix of each of the locations studied). We observed a highly significant positive correlation between the diversity index and the vegetation index of the fragment, landscape and shape index. Our analysis demonstrated that the observed variation could be explained mainly by the vegetation index and the size of the fragment. Variations in relative abundance showed a tendency toward an aggregated spatial distribution between the fragments studied, as well as between the sampling stations within the same habitat, demonstrating the existence of a spatial structure on a small scale in the populations of Euglossini. This distribution will determine the composition of species that coexist in the area after fragmentation. These data help in understanding the differences and similarities in the structure of communities of Euglossini resulting from forest fragmentation.

Abundance and diversity of soybean-nodulating rhizobia in black soil are impacted by land use and crop management.

PubMed

Yan, Jun; Han, Xiao Zeng; Ji, Zhao Jun; Li, Yan; Wang, En Tao; Xie, Zhi Hong; Chen, Wen Feng

2014-09-01

To investigate the effects of land use and crop management on soybean rhizobial communities, 280 nodule isolates were trapped from 7 fields with different land use and culture histories. Besides the known Bradyrhizobium japonicum, three novel genospecies were isolated from these fields. Grassland (GL) maintained a higher diversity of soybean bradyrhizobia than the other cultivation systems. Two genospecies (Bradyrhizobium spp. I and III) were distributed widely in all treatments, while Bradyrhizobium sp. II was found only in GL treatment. Cultivation with soybeans increased the rhizobial abundance and diversity, except for the soybean monoculture (S-S) treatment. In monoculture systems, soybeans favored Bradyrhizobium sp. I, while maize and wheat favored Bradyrhizobium sp. III. Fertilization decreased the rhizobial diversity indexes but did not change the species composition. The organic carbon (OC) and available phosphorus (AP) contents and pH were the main soil parameters positively correlated with the distribution of Bradyrhizobium spp. I and II and Bradyrhizobium japonicum and negatively correlated with Bradyrhizobium sp. III. These results revealed that different land uses and crop management could not only alter the diversity and abundance of soybean rhizobia, but also change interactions between rhizobia and legume or nonlegume plants, which offered novel information about the biogeography of rhizobia. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

The Ground-Dwelling Arthropod Community of Península Valdés in Patagonia, Argentina

PubMed Central

Cheli, Germán H.; Corley, J. C.; Bruzzone, O.; del Brío, M.; Martínez, F.; Román, N. Martínez; Ríos, I.

2010-01-01

This is the first study based on a planned and intensive sampling effort that describes the community composition and structure of the ground-dwelling arthropod assemblage of Península Valdés (Patagonia). It was carried out using pitfall traps, opened for two weeks during the summers of 2005, 2006 and 2007. A total of 28, 111 individuals were caught. Ants (Hymenoptera: Formicidae) dominated this community, followed by beetles (Coleoptera) and spiders (Araneae). The most abundant species were Pheidole bergi Mayr (Hymenoptera: Formicidae) and Blapstinus punctulatus Solier (Coleoptera: Tenebrionidae). Two new species were very recently described as new based on specimens collected during this study: Valdesiana curiosa Carpintero, Dellapé & Cheli (Hemiptera, Miridae) and Anomaloptera patagonica Dellapé & Cheli (Hemiptera, Oxycarenidae). The order Coleoptera was the most diverse taxa. The distribution of abundance data was best described by the logarithmic series model both at the family and species levels, suggesting that ecological relationships in this community could be controlled by a few factors. The community was dominated by predators from a trophic perspective. This suggests that predation acts as an important factor driving the distribution and abundances of surface-dwelling arthropods in this habitat and as such serves as a key element in understanding desert, above-ground community structure. These findings may also be useful for management and conservation purposes in arid Patagonia. PMID:20572783

The ground-dwelling arthropod community of Península Valdés in Patagonia, Argentina.

PubMed

Cheli, Germán H; Corley, J C; Bruzzone, O; Brío, M Del; Martínez, F; Román, N Martínez; Ríos, I

2010-01-01

This is the first study based on a planned and intensive sampling effort that describes the community composition and structure of the ground-dwelling arthropod assemblage of Península Valdés (Patagonia). It was carried out using pitfall traps, opened for two weeks during the summers of 2005, 2006 and 2007. A total of 28,111 individuals were caught. Ants(Hymenoptera: Formicidae) dominated this community, followed by beetles (Coleoptera) and spiders (Araneae). The most abundant species were Pheidole bergi Mayr (Hymenoptera:Formicidae) and Blapstinus punctulatus Solier (Coleoptera: Tenebrionidae). Two new species were very recently described as new based on specimens collected during this study: Valdesianacuriosa Carpintero, Dellapé & Cheli (Hemiptera, Miridae) and Anomaloptera patagonica Dellapé& Cheli (Hemiptera, Oxycarenidae). The order Coleoptera was the most diverse taxa. The distribution of abundance data was best described by the logarithmic series model both at the family and species levels, suggesting that ecological relationships in this community could be controlled by a few factors. The community was dominated by predators from a trophic perspective. This suggests that predation acts as an important factor driving the distribution and abundances of surface-dwelling arthropods in this habitat and as such serves as a key element in understanding desert, above-ground community structure. These findings may also be useful for management and conservation purposes in arid Patagonia.

Effect of different levels of nitrogen on rhizosphere bacterial community structure in intensive monoculture of greenhouse lettuce

NASA Astrophysics Data System (ADS)

Li, Jian-Gang; Shen, Min-Chong; Hou, Jin-Feng; Li, Ling; Wu, Jun-Xia; Dong, Yuan-Hua

2016-04-01

Pyrosequencing-based analyses revealed significant effects among low (N50), medium (N80), and high (N100) fertilization on community composition involving a long-term monoculture of lettuce in a greenhouse in both summer and winter. The non-fertilized control (CK) treatment was characterized by a higher relative abundance of Actinobacteria, Acidobacteria, and Chloroflexi; however, the average abundance of Firmicutes typically increased in summer, and the relative abundance of Bacteroidetes increased in winter in the N-fertilized treatments. Principle component analysis showed that the distribution of the microbial community was separated by a N gradient with N80 and N100 in the same group in the summer samples, while CK and N50 were in the same group in the winter samples, with the other N-level treatments existing independently. Redundancy analysis revealed that available N, NO3--N, and NH4+-N, were the main environmental factors affecting the distribution of the bacterial community. Correlation analysis showed that nitrogen affected the shifts of microbial communities by strongly driving the shifts of Firmicutes, Bacteroidetes, and Proteobacteria in summer samples, and Bacteroidetes, Actinobacteria, and Acidobacteria in winter samples. The study demonstrates a novel example of rhizosphere bacterial diversity and the main factors influencing rizosphere microbial community in continuous vegetable cropping within an intensive greenhouse ecosystem.

Estimation of avian population sizes and species richness across a boreal landscape in Alaska

USGS Publications Warehouse

Handel, Colleen M.; Swanson, S.A.; Nigro, Debora A.; Matsuoka, S.M.

2009-01-01

We studied the distribution of birds breeding within five ecological landforms in Yukon-Charley Rivers National Preserve, a 10,194-km2 roadless conservation unit on the Alaska-Canada border in the boreal forest zone. Passerines dominated the avifauna numerically, comprising 97% of individuals surveyed but less than half of the 115 species recorded in the Preserve. We used distance-sampling and discrete-removal models to estimate detection probabilities, densities, and population sizes across the Preserve for 23 species of migrant passerines and five species of resident passerines. Yellow-rumped Warblers (Dendroica coronata) and Dark-eyed Juncos (Junco hyemalis) were the most abundant species, together accounting for 41% of the migrant passerine populations estimated. White-winged Crossbills (Loxia leucoptera), Boreal Chickadees (Poecile hudsonica), and Gray Jays (Perisoreus canadensis) were the most abundant residents. Species richness was greatest in the Floodplain/Terrace landform flanking the Yukon River but densities were highest in the Subalpine landform. Species composition was related to past glacial history and current physiography of the region and differed notably from other areas of the northwestern boreal forest. Point-transect surveys, augmented with auxiliary observations, were well suited to sampling the largely passerine avifauna across this rugged landscape and could be used across the boreal forest region to monitor changes in northern bird distribution and abundance. ?? 2009 The Wilson Ornithological Society.

Photochemistry, mixing and transport in Jupiter's stratosphere constrained by Cassini

NASA Astrophysics Data System (ADS)

Hue, V.; Hersant, F.; Cavalié, T.; Dobrijevic, M.; Sinclair, J. A.

2018-06-01

In this work, we aim at constraining the diffusive and advective transport processes in Jupiter's stratosphere, using Cassini/CIRS observations published by Nixon et al. (2007,2010). The Cassini-Huygens flyby of Jupiter on December 2000 provided the highest spatially resolved IR observations of Jupiter so far, with the CIRS instrument. The IR spectrum contains the fingerprints of several atmospheric constituents and allows probing the tropospheric and stratospheric composition. In particular, the abundances of C2H2 and C2H6, the main compounds produced by methane photochemistry, can be retrieved as a function of latitude in the pressure range at which CIRS is sensitive to. CIRS observations suggest a very different meridional distribution for these two species. This is difficult to reconcile with their photochemical histories, which are thought to be tightly coupled to the methane photolysis. While the overall abundance of C2H2 decreases with latitude, C2H6 becomes more abundant at high latitudes. In this work, a new 2D (latitude-altitude) seasonal photochemical model of Jupiter is developed. The model is used to investigate whether the addition of stratospheric transport processes, such as meridional diffusion and advection, are able to explain the latitudinal behavior of C2H2 and C2H6. We find that the C2H2 observations are fairly well reproduced without meridional diffusion. Adding meridional diffusion to the model provides an improved agreement with the C2H6 observations by flattening its meridional distribution, at the cost of a degradation of the fit to the C2H2 distribution. However, meridional diffusion alone cannot produce the observed increase with latitude of the C2H6 abundance. When adding 2D advective transport between roughly 30 mbar and 0.01 mbar, with upwelling winds at the equator and downwelling winds at high latitudes, we can, for the first time, reproduce the C2H6 abundance increase with latitude. In parallel, the fit to the C2H2 distribution is degraded. The strength of the advective winds needed to reproduce the C2H6 abundances is particularly sensitive to the value of the meridional eddy diffusion coefficient. The coupled fate of these methane photolysis by-products suggests that an additional process is missing in the model. Ion-neutral chemistry was not accounted for in this work and might be a good candidate to solve this issue.

Endogenous Lunar Volatiles

NASA Technical Reports Server (NTRS)

McCubbin, F. M.; Liu, Y.; Barnes, J. J.; Boyce, J. W.; Day, J. M. D.; Elardo, S. M.; Hui, H.; Magna, T.; Ni, P.; Tartese, R.;

Molecular analysis of long-term biofilm formation on PVC and cast iron surfaces in drinking water distribution system.

PubMed

Liu, Ruyin; Zhu, Junge; Yu, Zhisheng; Joshi, DevRaj; Zhang, Hongxun; Lin, Wenfang; Yang, Min

2014-04-01

To understand the impacts of different plumbing materials on long-term biofilm formation in water supply system, we analyzed microbial community compositions in the bulk water and biofilms on faucets with two different materials-polyvinyl chloride (PVC) and cast iron, which have been frequently used for more than10 years. Pyrosequencing was employed to describe both bacterial and eukaryotic microbial compositions. Bacterial communities in the bulk water and biofilm samples were significantly different from each other. Specific bacterial populations colonized on the surface of different materials. Hyphomicrobia and corrosion associated bacteria, such as Acidithiobacillus spp., Aquabacterium spp., Limnobacter thiooxidans, and Thiocapsa spp., were the most dominant bacteria identified in the PVC and cast iron biofilms, respectively, suggesting that bacterial colonization on the material surfaces was selective. Mycobacteria and Legionella spp. were common potential pathogenic bacteria occurred in the biofilm samples, but their abundance was different in the two biofilm bacterial communities. In contrast, the biofilm samples showed more similar eukaryotic communities than the bulk water. Notably, potential pathogenic fungi, i.e., Aspergillus spp. and Candida parapsilosis, occurred in similar abundance in both biofilms. These results indicated that microbial community, especially bacterial composition was remarkably affected by the different pipe materials (PVC and cast iron). Copyright © 2014 The Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences. Published by Elsevier B.V. All rights reserved.

Nitrogen Cycling Potential of a Grassland Litter Microbial Community

PubMed Central

Berlemont, Renaud; Martiny, Adam C.; Martiny, Jennifer B. H.

2015-01-01

Because microorganisms have different abilities to utilize nitrogen (N) through various assimilatory and dissimilatory pathways, microbial composition and diversity likely influence N cycling in an ecosystem. Terrestrial plant litter decomposition is often limited by N availability; however, little is known about the microorganisms involved in litter N cycling. In this study, we used metagenomics to characterize the potential N utilization of microbial communities in grassland plant litter. The frequencies of sequences associated with eight N cycling pathways differed by several orders of magnitude. Within a pathway, the distributions of these sequences among bacterial orders differed greatly. Many orders within the Actinobacteria and Proteobacteria appeared to be N cycling generalists, carrying genes from most (five or six) of the pathways. In contrast, orders from the Bacteroidetes were more specialized and carried genes for fewer (two or three) pathways. We also investigated how the abundance and composition of microbial N cycling genes differed over time and in response to two global change manipulations (drought and N addition). For many pathways, the abundance and composition of N cycling taxa differed over time, apparently reflecting precipitation patterns. In contrast to temporal variability, simulated global change had minor effects on N cycling potential. Overall, this study provides a blueprint for the genetic potential of N cycle processes in plant litter and a baseline for comparisons to other ecosystems. PMID:26231641

Biocrust-forming mosses mitigate the impact of aridity on soil microbial communities in drylands: observational evidence from three continents.

PubMed

Delgado-Baquerizo, Manuel; Maestre, Fernando T; Eldridge, David J; Bowker, Matthew A; Jeffries, Thomas C; Singh, Brajesh K

2018-04-02

Recent research indicates that increased aridity linked to climate change will reduce the diversity of soil microbial communities and shift their community composition in drylands, Earth's largest biome. However, we lack both a theoretical framework and solid empirical evidence of how important biotic components from drylands, such as biocrust-forming mosses, will regulate the responses of microbial communities to expected increases in aridity with climate change. Here we report results from a cross-continental (North America, Europe and Australia) survey of 39 locations from arid to humid ecosystems, where we evaluated how biocrust-forming mosses regulate the relationship between aridity and the community composition and diversity of soil bacteria and fungi in dryland ecosystems. Increasing aridity was negatively related to the richness of fungi, and either positively or negatively related to the relative abundance of selected microbial phyla, when biocrust-forming mosses were absent. Conversely, we found an overall lack of relationship between aridity and the relative abundance and richness of microbial communities under biocrust-forming mosses. Our results suggest that biocrust-forming mosses mitigate the impact of aridity on the community composition of globally distributed microbial taxa, and the diversity of fungi. They emphasize the importance of maintaining biocrusts as a sanctuary for soil microbes in drylands. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

An Anomalous Composition in Slow Solar Wind as a Signature of Magnetic Reconnection in its Source Region

NASA Astrophysics Data System (ADS)

Zhao, L.; Landi, E.; Lepri, S. T.; Kocher, M.; Zurbuchen, T. H.; Fisk, L. A.; Raines, J. M.

2017-01-01

In this paper, we study a subset of slow solar winds characterized by an anomalous charge state composition and ion temperatures compared to average solar wind distributions, and thus referred to as an “Outlier” wind. We find that although this wind is slower and denser than normal slow wind, it is accelerated from the same source regions (active regions and quiet-Sun regions) as the latter and its occurrence rate depends on the solar cycle. The defining property of the Outlier wind is that its charge state composition is the same as that of normal slow wind, with the only exception being a very large decrease in the abundance of fully charged species (He2+, C6+, N7+, O8+, Mg12+), resulting in a significant depletion of the He and C element abundances. Based on these observations, we suggest three possible scenarios for the origin of this wind: (1) local magnetic waves preferentially accelerating non-fully stripped ions over fully stripped ions from a loop opened by reconnection; (2) depleted fully stripped ions already contained in the corona magnetic loops before they are opened up by reconnection; or (3) fully stripped ions depleted by Coulomb collision after magnetic reconnection in the solar corona. If any one of these three scenarios is confirmed, the Outlier wind represents a direct signature of slow wind release through magnetic reconnection.

Seasonal Diversity Patterns of a Coastal Synechococcus Population

NASA Astrophysics Data System (ADS)

Hunter-Cevera, K. R.; Sosik, H. M.; Neubert, M.; Hammar, K.; Post, A.

2016-02-01

Understanding how environmental and ecological factors determine phytoplankton species abundances requires knowledge of the diversity present within a population. For the important primary producer Synechococcus, clades demonstrate differences in temperature tolerance, light acclimation, grazer palatability, and more. Marine Synechococcus populations are often composed of more than one clade, and overall population dynamics will be governed by the types of cells present and by their individual physiological capabilities. We investigate the diversity of the Synechococcus assemblage at the Martha's Vineyard Coastal Observatory with high-throughput sequencing of the V6 hypervariable region of the 16S rRNA gene. Small nucleotide differences within this region allow for resolution of distinct phylotypes that can have a direct correspondence to the well-defined Synechococcus clades. From a three-year time series, we find that the Synechococcus population is dominated by 5 distinct phylotypes, and that each type exhibits a repeatable, seasonal pattern in relative abundance. We use compositional data analysis techniques to investigate the relationships between these patterns and environmental factors. We further interpret these patterns in the context of Synechococcus population dynamics assessed by automated, submersible flow cytometry (FlowCytobot). Observed diel changes in cell size distributions, coupled with a validated matrix population model, provide estimates of in situ population division rates. We find strong evidence that the main seasonal diversity patterns are governed by temperature, but that biological loss agents likely shape the diversity structure for certain times of year. For some phylotypes, relative abundance patterns are also related to light and nutrients. The composition of Synechococcus over the annual cycle appears to directly affect seasonal features of cell abundance patterns, such as the spring bloom.

Limnological and fishery studies on Lake Sharpe, a main-stem Missouri River reservoir

USGS Publications Warehouse

June, Fred C.; Beckman, L.G.; Elrod, J.H.; O'Bryan, G.K.; Vogel, D.A.

1987-01-01

Lake Sharpe, the most recent of six main-stem Missouri River reservoirs to be impounded, began to fill in November 1963 and became fully operational in July 1966. At full pool it is 137 km long, and has a surface area of 22,600 ha and a volume of 2.34 km". It is operated as a flow-through power generation system that reregulates discharges from upstream Lake Oahe. Major changes in the water-management regimen during 1966-75 were increased summer discharges beginning in 1969 and increased peaking operations beginning in 1973. Lake Sharpe had a relatively short aging process because it filled rapidly, the water level remained relatively stable, and the waterexchange rate was high. Consequently, most physical, chemical, and biological characteristics were remarkably uniform during 1966–75. The temperature regimen was largely governed by inflow from Lake Oahe. Although the water mass warmed during summer, thermal stratification was generally transient, limited to the lower reservoir, and more common during periods of relatively low discharge rates in 1966–68 than in later years. Variation in turbidity was striking; the midsection of the reservoir was generally most turbid. Chemical ion composition of the water tended to be uniform; observed differences were localized and associated with tributary inflows. Phytoplankton abundance reached its highest levels during 1970–75. Composition of the zooplankton community changed during 1966–75; the abundance of cyclopoid copepods decreased and that of calanoid copepods and cladocerans increased. Total abundance varied during the 10-year period, but without apparent trend. Variation in abundance appeared to be associated with discharge rate, water temperature, and turbidity. The benthic community in 1967-68 consisted mostly of chironomid larvae, which were uniformly distributed over the length of the reservoir.

Ecotone analysis: assessing the impact of vehicle transit on saltmarsh crab population and ecosystem.

PubMed

Trave, Claudia; Sheaves, Marcus

2014-01-01

The frequent transit of vehicles (recreational or not) through saltpans and saltmarsh fields has been recorded as one of the major causes of physical and ecological damage for these environments. While several studies have been carried out to assess the consequence of this anthropogenic activity on the different local plant species, little is known on its long-term impact on the faunal community. Invertebrates, such as crabs, provide several essential ecological services, and their presence and abundance are tightly connected to that of the saltmarsh plants. Decrease of vegetative cover due to vehicle transit is likely to cause alterations in the morphology and the composition of the saltmarsh ecosystem. In this study we evaluate presence and distribution of the main crustacean species in several impacted sites in Townsville area (Queensland, Australia), to determine possible correlation between vehicle tracks alterations and crab distribution, as well as investigate any possible habitat shift in the mid- and long-term. Results indicate that reduction of plant cover affects species composition and distribution, with different effects based on the unique characteristics of each crab species analysed, resulting in an overall alteration of the assemblage structure.

Influence of Pools and Riffles on Chironomidae Diversity in Headwater Streams of the Atlantic Forest.

PubMed

Silveira, L S; Rosa, B F J V; Gonçalves, E A; Alves, R G

2015-10-01

Studies on mesohabitat scale have been used to shed light on the ecology and distribution of chironomid larvae in small streams. Thus, the objective of the present study was to examine the diversity and distribution of the Chironomidae assemblage on the mesohabitat scale in three streams located in different preserved areas of southeastern Brazil. In each stream, litter samples were obtained in the dry season of 2010 in ten pools and ten riffles with a Surber sampler (area 0.04 m(2); mesh size 0.21 mm). The abundance was similar among streams and between mesohabitats, while the estimated richness was highest in riffles. There was a difference in the composition of the Chironomidae assemblages between the mesohabitats, although the litter composition was similar between them, indicating the importance of current speed on the distribution of the taxa. The dispersion of the sample units (β-diversity) of riffles and pools was similar, although it was different among the three streams. The results of this study provide further evidence of the importance of habitat heterogeneity within streams as a generator of diversity for Chironomidae in tropical lotic systems.

Abundance and distribution of Corallorhiza odontorhiza reflect variations in climate and ectomycorrhizae

Treesearch

Melissa K. McCormick; Dennis F. Whigham; John P. O' Neill; Janie J. Becker; Sarah Werner; Hanne N. Rasmussen; Thomas D. Bruns; D. Lee Taylor

2009-01-01

The abundance and reproductive activity of orchids have been linked to variations in weather conditions, but few investigators have examined the relationships between orchid flowering dynamics and the distribution and abundance of mycorrhizal fungi. We quantified the abundance of flowering individuals of Corallorhiza odontorhiza, a...

Environmental Conditions Outweigh Geographical Contiguity in Determining the Similarity of nifH-Harboring Microbial Communities in Sediments of Two Disconnected Marginal Seas

PubMed Central

Zhou, Haixia; Dang, Hongyue; Klotz, Martin G.

2016-01-01

Ecological evidence suggests that heterotrophic diazotrophs fueled by organic carbon respiration in sediments play an important role in marine nitrogen fixation. However, fundamental knowledge about the identities, abundance, diversity, biogeography, and controlling environmental factors of nitrogen-fixing communities in open ocean sediments is still elusive. Surprisingly, little is known also about nitrogen-fixing communities in sediments of the more research-accessible marginal seas. Here we report on an investigation of the environmental geochemistry and putative diazotrophic microbiota in the sediments of Bohai Sea, an eutrophic marginal sea of the western Pacific Ocean. Diverse and abundant nifH gene sequences were identified and sulfate-reducing bacteria (SRB) were found to be the dominant putative nitrogen-fixing microbes. Community statistical analyses suggested bottom water temperature, bottom water chlorophyll a content (or the covarying turbidity) and sediment porewater Eh (or the covarying pH) as the most significant environmental factors controlling the structure and spatial distribution of the putative diazotrophic communities, while sediment Hg content, sulfide content, and porewater SiO32−-Si content were identified as the key environmental factors correlated positively with the nifH gene abundance in Bohai Sea sediments. Comparative analyses between the Bohai Sea and the northern South China Sea (nSCS) identified a significant composition difference of the putative diazotrophic communities in sediments between the shallow-water (estuarine and nearshore) and deep-water (offshore and deep-sea) environments, and sediment porewater dissolved oxygen content, water depth and in situ temperature as the key environmental factors tentatively controlling the species composition, community structure, and spatial distribution of the marginal sea sediment nifH-harboring microbiota. This confirms the ecophysiological specialization and niche differentiation between the shallow-water and deep-water sediment diazotrophic communities and suggests that the in situ physical and geochemical conditions play a more important role than geographical contiguity in determining the community similarity of the diazotrophic microbiota in marginal sea sediments. PMID:27489551

Deep-water zooplankton of the Guaymas basin hydrothermal vent field

NASA Astrophysics Data System (ADS)

Wiebe, Peter H.; Copley, Nancy; Van Dover, Cindy; Tamse, Armando; Manrique, Fernando

1988-06-01

Zooplankton from the Guaymas Basin deep-sea vent field were collected with a 1 m 2 MOCNESS to examine the distribution of total standing stock, taxonomic composition, size-frequency distribution of zooplankton, and the species composition of calanoid copepods. Low altitude (˜ 100 m above the bottom) horizontal tows along and across the axis of the basin's southern trough, and oblique tows from the bottom of the basin (˜ 2000 m) to the surface were made. Total biomass in near-bottom samples (range: 13-46 cc/1000 m 3) was only about a factor of 10 lower than in the upper 100 m. However, there was little or no evidence for enrichment of biomass in the ˜ 100 m zone above the vent site relative to biomass at the same depth horizon over non-vent areas. Total numbers of individuals ranged between 2600 and 4800/1000 m 3. Calanoid copepods consistently ranked first in abundance of counts of the taxa, followed by cyclopoid copepods, ostracods, chaetognaths, and amphipods. Other less abundant taxa, but in some cases important contributors to total biomass, were coelenterates (siphonophores, medusae), decapod shrimp, and polychaetes. Size-frequency analysis of individuals from each taxon indicated that the biomass and abundance spectra do not fit the theoretically expected spectra based on weight-dependent metabolism and growth. The pyramid of biomass was substantially different from the pyramid of numbers in this deep-sea community. Of the 67 species of copepods identified in two samples taken on low altitude tows, only 15 co-occurred in both samples. Many of the species in this relatively diverse community remain to be described. Larval and post-larval forms of benthic clams, gastropods, polychaetes, and crustaceans associated with the vents were collected 100-200 m above the southern trough, indicating the post-larvae may play an active role in dispersal of hydrothermal vent species.

Tree Species Composition and Harvest Intensity Affect Herbivore Density and Leaf Damage on Beech, Fagus sylvatica, in Different Landscape Contexts

PubMed Central

Mangels, Jule; Blüthgen, Nico; Frank, Kevin; Grassein, Fabrice; Hilpert, Andrea; Mody, Karsten

2015-01-01

Most forests are exposed to anthropogenic management activities that affect tree species composition and natural ecosystem processes. Changes in ecosystem processes such as herbivory depend on management intensity, and on regional environmental conditions and species pools. Whereas influences of specific forest management measures have already been addressed for different herbivore taxa on a local scale, studies considering effects of different aspects of forest management across different regions are rare. We assessed the influence of tree species composition and intensity of harvesting activities on arthropod herbivores and herbivore-related damage to beech trees, Fagus sylvatica, in 48 forest plots in three regions of Germany. We found that herbivore abundance and damage to beech trees differed between regions and that – despite the regional differences - density of tree-associated arthropod taxa and herbivore damage were consistently affected by tree species composition and harvest intensity. Specifically, overall herbivore damage to beech trees increased with increasing dominance of beech trees – suggesting the action of associational resistance processes – and decreased with harvest intensity. The density of leaf chewers and mines was positively related to leaf damage, and several arthropod groups responded to beech dominance and harvest intensity. The distribution of damage patterns was consistent with a vertical shift of herbivores to higher crown layers during the season and with higher beech dominance. By linking quantitative data on arthropod herbivore abundance and herbivory with tree species composition and harvesting activity in a wide variety of beech forests, our study helps to better understand the influence of forest management on interactions between a naturally dominant deciduous forest tree and arthropod herbivores. PMID:25938417

Barrier Island Morphology and Sediment Characteristics Affect the Recovery of Dune Building Grasses following Storm-Induced Overwash

PubMed Central

Brantley, Steven T.; Bissett, Spencer N.; Young, Donald R.; Wolner, Catherine W. V.; Moore, Laura J.

2014-01-01

Barrier islands are complex and dynamic systems that provide critical ecosystem services to coastal populations. Stability of these systems is threatened by rising sea level and the potential for coastal storms to increase in frequency and intensity. Recovery of dune-building grasses following storms is an important process that promotes topographic heterogeneity and long-term stability of barrier islands, yet factors that drive dune recovery are poorly understood. We examined vegetation recovery in overwash zones on two geomorphically distinct (undisturbed vs. frequently overwashed) barrier islands on the Virginia coast, USA. We hypothesized that vegetation recovery in overwash zones would be driven primarily by environmental characteristics, especially elevation and beach width. We sampled species composition and environmental characteristics along a continuum of disturbance from active overwash zones to relict overwash zones and in adjacent undisturbed environments. We compared species assemblages along the disturbance chronosequence and between islands and we analyzed species composition data and environmental measurements with Canonical Correspondence Analysis to link community composition with environmental characteristics. Recovering and geomorphically stable dunes were dominated by Ammophila breviligulata Fernaud (Poaceae) on both islands while active overwash zones were dominated by Spartina patens (Aiton) Muhl. (Poaceae) on the frequently disturbed island and bare sand on the less disturbed island. Species composition was associated with environmental characteristics only on the frequently disturbed island (p = 0.005) where A. breviligulata was associated with higher elevation and greater beach width. Spartina patens, the second most abundant species, was associated with larger sediment grain size and greater sediment size distribution. On the less frequently disturbed island, time since disturbance was the only factor that affected community composition. Thus, factors driving the abundance of dune-building grasses and subsequent recovery of dunes varied between the two geomorphically distinct islands. PMID:25148028

Keystone taxa as drivers of microbiome structure and functioning.

PubMed

Banerjee, Samiran; Schlaeppi, Klaus; van der Heijden, Marcel G A

2018-05-22

Microorganisms have a pivotal role in the functioning of ecosystems. Recent studies have shown that microbial communities harbour keystone taxa, which drive community composition and function irrespective of their abundance. In this Opinion article, we propose a definition of keystone taxa in microbial ecology and summarize over 200 microbial keystone taxa that have been identified in soil, plant and marine ecosystems, as well as in the human microbiome. We explore the importance of keystone taxa and keystone guilds for microbiome structure and functioning and discuss the factors that determine their distribution and activities.

Availability of hydrogen for lunar base activities

NASA Technical Reports Server (NTRS)

Bustin, Roberta

1990-01-01

Hydrogen will be needed on a lunar base to make water for consumables, to provide fuel, and to serve as reducing agent in the extraction of oxygen from lunar minerals. The abundance and distribution of solar wind implanted hydrogen were studied. Hydrogen was found in all samples studied with concentrations varying widely depending on soil maturity, grain size, and mineral composition. Seven cores returned from the moon were studied. Although hydrogen was implanted in the upper surface layer of the regolith, it was found throughout the cores due to micrometeorite reworking of the soil.

Comparative composition, diversity, and abundance of oligosaccharides in early lactation milk from commercial dairy and beef cows

PubMed Central

Sischo, William M.; Short, Diana M.; Geissler, Mareen; Bunyatratchata, Apichaya; Barile, Daniela

2017-01-01

Prebiotics are nondigestible dietary ingredients, usually oligosaccharides (OS), that provide a health benefit to the host by directly modulating the gut microbiota. Although there is some information describing OS content in dairy-source milk, no information is available to describe the OS content of beef-source milk. Given the different trait emphasis between dairy and beef for milk production and calf survivability, it is plausible that OS composition, diversity, and abundance differ between production types. The goal of this study was to compare OS in milk from commercial dairy and beef cows in early lactation. Early-lactation multiparous cows (5–12 d in milk) from 5 commercial Holstein dairy herds and 5 Angus or Angus hybrid beef herds were sampled once. Milk was obtained from each enrolled cow and frozen on the farm. Subsequently, each milk sample was assessed for total solids, pH, and OS content and relative abundance. Oligosaccharide diversity and abundance within and between samples was transformed through principal component analysis to reduce data complexity. Factors from principal component analysis were used to create similarity clusters, which were subsequently used in a multivariate logistic regression. In total, 30 OS were identified in early-lactation cow milk, including 21 distinct OS and 9 isomers with unique retention times. The majority of OS detected in the milk samples were present in all individual samples regardless of production type. Two clusters described distribution patterns of OS for the study sample; when median OS abundance was compared between the 2 clusters, we found that overall OS relative abundance was consistently greater in the cluster dominated by beef cows. For several of the structures, including those with known prebiotic effect, the difference in abundance was 2- to 4-fold greater in the beef-dominated cluster. Assuming that beef OS content in milk is the gold standard for cattle, it is likely that preweaning dairy calves are deprived of dietary-source OS. Although supplementing rations with OS is an approach to rectify this deficiency, understanding the health and productivity effects of improving OS abundance being fed to preweaning calves is a necessary next step before recommending supplementation. These studies should account for the observation that OS products are variable for both OS diversity and structural complexity, and some products may not be suitable as prebiotics. PMID:28318588

Petrologic comparisons of Cayley and Descartes on the basis of Apollo 16 soils from stations 4 and 11

NASA Technical Reports Server (NTRS)

Basu, A.; Mckay, D. S.

1984-01-01

Petrologic aspects of the Cayley and Descartes formations are reviewed in the light of new data on Apollo 16 soils. Specific comparison of the modal abundances of lithic fragments in drive tube sample 64001/2 from the slopes of Stone Mountain (station 4) and in soil 67941 from the North Ray Crater rim (station 11) shows that melt rocks, especially poikilitic rocks, are more abundant at station 4 than at station 11; the reverse is true for fragmental breccias. Such lithologic differences suggest that stations 4 and 11 do not belong to the same geologic formation. Metamorphosed breccias are pervasive in both the formations and may represent a local component that has been reworked and diluted as fresh materials were added. Lithologic compositions inferred from the study of soil samples are different from lithologic compositions inferred from the study of rake samples or breccia clasts. This difference may be related to a mixing of material of different grain size distributions. The petrology of soils at the Apollo 16 site may not accurately reflect original material associated with either the Descartes or the Cayley formation because of extensive mixing with local material.

Community change in the variable resource habitat of the abyssal northeast Pacific.

PubMed

Ruhl, Henry A

2008-04-01

Research capable of differentiating resource-related community-level change from random ecological drift in natural systems has been limited. Evidence for nonrandom, resource-driven change is presented here for an epibenthic megafauna community in the abyssal northeast Pacific Ocean from 1989 to 2004. The sinking particulate organic carbon food supply is linked not only to species-specific abundances, but also to species composition and equitability. Shifts in rank abundance distributions (RADs) and evenness, from more to less equitable, correlated to increased food supply during La Niña phases of the El Niño Southern Oscillation. The results suggest that each taxon exhibited a differential response to a sufficiently low dimension resource, which led to changes in community composition and equitability. Thus the shifts were not likely due to random ecological drift. Although the community can undergo population-level variations of one or more orders of magnitude, and the shape of the RADs was variable, the organization retained a significant consistency, providing evidence of limits for such changes. The growing evidence for limited resource-driven changes in RADs and evenness further emphasizes the potential importance of temporally variable disequilibria in understanding why communities have certain basic attributes.

Distribution of materials excavated by the lunar crater Bullialdus and implications for the geologic history of the Nubium region

NASA Technical Reports Server (NTRS)

Tompkins, Stefanie; Pieters, Carle M.; Mustard, John F.; Pinet, Patrick; Chevrel, Serge D.

1994-01-01

Previous spectroscopic studies of the lunar crater Bullialdus, located in the Nubium Basin, indicated an unusual stratigraphy of two gabbroic layers overlying a noritic unit. The possible existence of a layered mafic pluton at Bullialdus was suggested. To investigate the geologic context with more detailed spatial information, charge-coupled device (CCD) images of Bullialdus were obtained using eight filters. A linear mixing model was used to investigate the fractional abundances of spectral end-members chosen from within the multispectral image. Since the reflectance properties of lunar materials over this wavelength range are sensitive to variations in composition and soil maturity, fractional abundance images were used to create a new geologic map of the crater. The spatial relationships of the surface materials confirm the previously inferred stratigraphy, and further reveal the central peaks to exhibit two distinct compositional units: noritic anorthosite and anorthositic norite. Three models for the origin of the observed stratigraphy are considered: Bullialdus has excavated stratigraphic units containing (1) early mare basalt overlying anorthositic-noritic crustal material, (2) part of a layered mafic pluton, and/or (3) part of an impact melt sheet formed by the Nubium Basin impact event.

Community Composition and Abundance of Anammox Bacteria in Cattail Rhizosphere Sediments at Three Phenological Stages.

PubMed

Zhou, Xiaohong; Zhang, Jinping; Wen, Chunzi

2017-11-01

The distribution of anammox bacteria in rhizosphere sediments of cattail (Typha orientalis) at different phenological stages was investigated. Results showed that the number of 16S rRNA gene copies of the anammox bacteria was considerably higher in the rhizosphere sediment than in the nonrhizosphere sediment and control sediment. The abundances of the anammox bacteria exhibited striking temporal variations in the three different cattail phenological stages. In addition, the Chao1 and Shannon H indexes of the anammox bacteria in cattail rhizosphere sediments had evident spatial and temporal variations at different phenological stages. Four anammox genera (Brocadia, Kuenenia, Jettenia, and a new cluster) were detected and had proportions of 34.18, 45.57, 0.63, and 19.62%, respectively. The CCA analysis results indicated that Cu, TN, Pb, and Zn were pivotal factors that affect anammox bacteria composition. The PCoA analysis results indicated that the community structure at the rhizosphere and nonrhizosphere sediments collected on July was relatively specific and was different from sediments collected on other months, suggesting that cattail can influence the community structures of the anammox bacteria at the maturity stage.

The isotopic composition of cosmic ray calcium

NASA Technical Reports Server (NTRS)

Krombel, K. E.; Wiedenbeck, M. E.

1985-01-01

Data from the high energy cosmic ray experiment on the international sun earth explorer 3 (ISEE-3) spacecraft have been used to study the isotopic composition of cosmic ray calcium at an energy of approx. 260 MeV/amu. The arriving calcium is found to consist of (32 + or - 6)%. A propagation model consistent with both the light and the subiron secondary element abundances was used for the interpretation of the observed calcium composition. The measured 42Ca+43Ca+44Ca abundance is consistent with the calculated secondary production, while the 40Ca abundance implies a source ratio of 40Ca/Fe = (7.0 + or - 1.7)%.

Changes in composition and abundance of functional groups of arctic fungi in response to long-term summer warming

PubMed Central

Semenova, Tatiana A.; Morgado, Luis N.; Welker, Jeffrey M.

2016-01-01

We characterized fungal communities in dry and moist tundra and investigated the effect of long-term experimental summer warming on three aspects of functional groups of arctic fungi: richness, community composition and species abundance. Warming had profound effects on community composition, abundance, and, to a lesser extent, on richness of fungal functional groups. In addition, our data show that even within functional groups, the direction and extent of response to warming tend to be species-specific and we recommend that studies on fungal communities and their roles in nutrient cycling take into account species-level responses. PMID:27881760

Diversity, Abundance, and Niche Differentiation of Ammonia-Oxidizing Prokaryotes in Mud Deposits of the Eastern China Marginal Seas.

PubMed

Yu, Shaolan; Yao, Peng; Liu, Jiwen; Zhao, Bin; Zhang, Guiling; Zhao, Meixun; Yu, Zhigang; Zhang, Xiao-Hua

2016-01-01

The eastern China marginal seas (ECMS) are prominent examples of river-dominated ocean margins, whose most characteristic feature is the existence of isolated mud patches on sandy sediments. Ammonia-oxidizing prokaryotes play a crucial role in the nitrogen cycles of many marine environments, including marginal seas. However, few studies have attempted to address the distribution patterns of ammonia-oxidizing prokaryotes in mud deposits of these seas. The horizontal and vertical community composition and abundance of ammonia-oxidizing archaea (AOA) and bacteria (AOB) were investigated in mud deposits of the South Yellow Sea (SYS) and the East China Sea (ECS) by using amoA clone libraries and quantitative PCR. The diversity of AOB was comparable or higher in the mud zone of SYS and lower in ECS when compared with AOA. Vertically, surface sediments had generally higher diversity of AOA and AOB than middle and bottom layers. Diversity of AOA and AOB showed significant correlation with latitude. Nitrosopumilus and Nitrosospira lineages dominated AOA and AOB communities, respectively. Both AOA and AOB assemblages exhibited greater variations across different sites than those among various depths at one site. The abundance of bacterial amoA was generally higher than that of archaeal amoA, and both of them decreased with depth. Niche differentiation, which was affected by dissolved oxygen, salinity, ammonia, and silicate (SiO[Formula: see text]), was observed between AOA and AOB and among different groups of them. The spatial distribution of AOA and AOB was significantly correlated with δ(15)NTN and SiO[Formula: see text], and nitrate and δ(13)C, respectively. Both archaeal and bacterial amoA abundance correlated strongly with SiO[Formula: see text]. This study improves our understanding of spatial distribution of AOA and AOB in ecosystems featuring oceanic mud deposits.

Distribution and abundance of forest birds in low-altitude habitat on Hawai'i Island: Evidence for range expansion of native species

USGS Publications Warehouse

Spiegel, C.S.; Hart, P.J.; Woodwort, B.L.; Tweed, E.J.; Leburn, J.J.

2006-01-01

The Hawaiian honeycreepers are thought to be limited primarily to middle- and high-altitude wet forests due to anthropogenic factors at lower altitudes, especially introduced mosquitotransmitted avian malaria. However, recent research has demonstrated that at least one native species, the Hawai'i 'Amakihi (Hemignathus virens virens), is common in areas of active malaria transmission. We examined the current distribution and abundance of native and exotic forest birds within approximately 640 km2 of low-altitude (0-326 m) habitat on south-eastern Hawai'i Island, using roadside variable circular plot (VCP) at 174 stations along eight survey transects. We also re-surveyed 90 stations near sea level that were last surveyed in 1994-1995. Overall, introduced species were more abundant than natives; 11 exotic species made up 87% of the total individuals detected. The most common exotic passerines were Japanese White-eye (Zosterops japonicus), House Finch (Carpodacus mexicanus) and Northern Cardinal (Cardinalis cardinalis). Two native species, Hawai'i 'Amakihi and 'Apapane (Himatione sanguina), comprised 13% of the bird community at low altitudes. Hawai'i 'Amakihi were the most common and widespread native species, being found at 47% of stations at a density of 4.98 birds/ha (95% CI 3.52-7.03). Amakihi were significantly associated with 'ohi'a (Metrosideros polymorpha)-dominated forest. 'Apapane were more locally distributed, being found at only 10% of stations. Re-surveys of 1994-1995 transects demonstrated a significant increase in 'Amakihi abundance over the past decade. This work demonstrates a widespread recovery of Hawai'i 'Amakihi at low altitude in southeastern Hawai'i. The changing composition of the forest bird community at low-altitudes in Hawai'i has important implications for the dynamics of avian malaria in low-altitude Hawai'i, and for conservation of Hawai'i's lowland forests. ?? 2006 BirdLife International.

A new statistical method for characterizing the atmospheres of extrasolar planets

NASA Astrophysics Data System (ADS)

Henderson, Cassandra S.; Skemer, Andrew J.; Morley, Caroline V.; Fortney, Jonathan J.

2017-10-01

By detecting light from extrasolar planets, we can measure their compositions and bulk physical properties. The technologies used to make these measurements are still in their infancy, and a lack of self-consistency suggests that previous observations have underestimated their systemic errors. We demonstrate a statistical method, newly applied to exoplanet characterization, which uses a Bayesian formalism to account for underestimated errorbars. We use this method to compare photometry of a substellar companion, GJ 758b, with custom atmospheric models. Our method produces a probability distribution of atmospheric model parameters including temperature, gravity, cloud model (fsed) and chemical abundance for GJ 758b. This distribution is less sensitive to highly variant data and appropriately reflects a greater uncertainty on parameter fits.

Amino Acids and Chirality

NASA Technical Reports Server (NTRS)

Cook, Jamie E.

2012-01-01

Amino acids are among the most heavily studied organic compound class in carbonaceous chondrites. The abundance, distributions, enantiomeric compositions, and stable isotopic ratios of amino acids have been determined in carbonaceous chondrites fi'om a range of classes and petrographic types, with interesting correlations observed between these properties and the class and typc of the chondritcs. In particular, isomeric distributions appear to correlate with parent bodies (chondrite class). In addition, certain chiral amino acids are found in enantiomeric excess in some chondrites. The delivery of these enantiomeric excesses to the early Earth may have contributed to the origin of the homochirality that is central to life on Earth today. This talk will explore the amino acids in carbonaceous chondritcs and their relevance to the origin of life.

Isotopic compositions of the elements, 2001

USGS Publications Warehouse

Böhlke, J.K.; De Laeter, J. R.; De Bievre, P.; Hidaka, H.; Peiser, H.S.; Rosman, K.J.R.; Taylor, P.D.P.

2005-01-01

The Commission on Atomic Weights and Isotopic Abundances of the International Union of Pure and Applied Chemistry completed its last review of the isotopic compositions of the elements as determined by isotope-ratio mass spectrometry in 2001. That review involved a critical evaluation of the published literature, element by element, and forms the basis of the table of the isotopic compositions of the elements (TICE) presented here. For each element, TICE includes evaluated data from the “best measurement” of the isotope abundances in a single sample, along with a set of representative isotope abundances and uncertainties that accommodate known variations in normal terrestrial materials. The representative isotope abundances and uncertainties generally are consistent with the standard atomic weight of the element Ar(E)">Ar(E)Ar(E) and its uncertainty U[Ar(E)]">U[Ar(E)]U[Ar(E)] recommended by CAWIA in 2001.

Defining microbial community composition and seasonal variation in a sewage treatment plant in India using a down-flow hanging sponge reactor.

PubMed

Nomoto, Naoki; Hatamoto, Masashi; Hirakata, Yuga; Ali, Muntjeer; Jayaswal, Komal; Iguchi, Akinori; Okubo, Tsutomu; Takahashi, Masanobu; Kubota, Kengo; Tagawa, Tadashi; Uemura, Shigeki; Yamaguchi, Takashi; Harada, Hideki

2018-05-01

The characteristics of the microbial community in a practical-scale down-flow hanging sponge (DHS) reactor, high in organic matter and sulfate ion concentration, and the seasonal variation of the microbial community composition were investigated. Microorganisms related to sulfur oxidation and reduction (2-27%), as well as Leucobacter (7.50%), were abundant in the reactor. Anaerobic bacteria (27-38% in the first layer) were also in abundance and were found to contribute to the removal of organic matter from the sewage in the reactor. By comparing the Simpson index, the abundance-based coverage estimator (ACE) index, and the species composition of the microbial community across seasons (summer/dry, summer/rainy, autumn/dry, and winter/dry), the microbial community was found to change in composition only during the winter season. In addition to the estimation of seasonal variation, the difference in the microbial community composition along the axes of the DHS reactor was investigated for the first time. Although the abundance of each bacterial species differed along both axes of the reactor, the change of the community composition in the reactor was found to be greater along the vertical axis than the horizontal axis of the DHS reactor.

Bacterial biofilm composition in caries and caries-free subjects.

PubMed

Wolff, D; Frese, C; Maier-Kraus, T; Krueger, T; Wolff, B

2013-01-01

Certain major pathogens such as Streptococcus mutans, Lactobacillus spp. and others have been reported to be involved in caries initiation and progression. Yet, in addition to those leading pathogens, microbial communities seem to be much more diverse and individually differing. The aim of this study, therefore, was to analyze the bacterial composition of carious dentin and the plaque of caries-free patients by using a custom-made, real-time quantitative polymerase chain reaction assay (RQ-PCR). The study included 26 patients with caries and 28 caries-free controls. Decayed tooth substance and plaque samples were harvested. Bacterial DNA was extracted and tested for the presence of 43 bacterial species or species groups using RQ-PCR. Relative quantification revealed that Propionibacterium acidifaciens was significantly more abundant in caries samples than were other microorganisms (fold change 169.12, p = 0.023). In the caries-free samples, typical health-associated species were significantly more prevalent. Unsupervised hierarchical cluster analysis showed a high abundance of P. acidifaciens in caries subjects and distinct but individually differing bacterial clusters in the caries-free subjects. The distribution of 11 bacteria allowed full discrimination between caries and caries-free subjects. Within the investigated cohort, P. acidifaciens was the only pathogen significantly more abundant in caries subjects. Cluster analysis yielded a diverse flora in caries-free subjects, whereas it was narrowed down to a small range of a few outcompeting members in caries subjects. Copyright © 2012 S. Karger AG, Basel.

A probabilistic approach to remote compositional analysis of planetary surfaces

USGS Publications Warehouse

Lapotre, Mathieu G.A.; Ehlmann, Bethany L.; Minson, Sarah E.

2017-01-01

Reflected light from planetary surfaces provides information, including mineral/ice compositions and grain sizes, by study of albedo and absorption features as a function of wavelength. However, deconvolving the compositional signal in spectra is complicated by the nonuniqueness of the inverse problem. Trade-offs between mineral abundances and grain sizes in setting reflectance, instrument noise, and systematic errors in the forward model are potential sources of uncertainty, which are often unquantified. Here we adopt a Bayesian implementation of the Hapke model to determine sets of acceptable-fit mineral assemblages, as opposed to single best fit solutions. We quantify errors and uncertainties in mineral abundances and grain sizes that arise from instrument noise, compositional end members, optical constants, and systematic forward model errors for two suites of ternary mixtures (olivine-enstatite-anorthite and olivine-nontronite-basaltic glass) in a series of six experiments in the visible-shortwave infrared (VSWIR) wavelength range. We show that grain sizes are generally poorly constrained from VSWIR spectroscopy. Abundance and grain size trade-offs lead to typical abundance errors of ≤1 wt % (occasionally up to ~5 wt %), while ~3% noise in the data increases errors by up to ~2 wt %. Systematic errors further increase inaccuracies by a factor of 4. Finally, phases with low spectral contrast or inaccurate optical constants can further increase errors. Overall, typical errors in abundance are <10%, but sometimes significantly increase for specific mixtures, prone to abundance/grain-size trade-offs that lead to high unmixing uncertainties. These results highlight the need for probabilistic approaches to remote determination of planetary surface composition.

Nuclear reactions in type IA supernovae: Effects of progenitor composition and detonation asymmetry

NASA Astrophysics Data System (ADS)

Chamulak, David A.

Type Ia supernovae go through three distinct phases before their progenitor star is obliterated in a thermonuclear explosion. First is "simmering," during which the 12 C + 12 C reaction gradually heats the white dwarf on a long (~10^3 yr) timescale. Next is a period of subsonic burning. Finally, a detonation is thought to occur that finishes unbinding the star. This thesis investigates the nuclear reactions that take place in these three phases and considers what that may be able to tell us about the progenitor systems and the mechanics behind the detonation. First, we investigate the nuclear reactions during this simmering with a series of self-heating, at constant pressure, reaction network calculations. As an aid to hydrodynamical simulations of the simmering phase, we present fits to the rates of heating, electron capture, change in mean atomic mass, and consumption of 12 C in terms of the screened thermally averaged cross section for 12 C + 12 C. Our evaluation of the net heating rate includes contributions from electron captures into the 3.68 MeV excited state of 13 C. We compare our one-zone results to more accurate integrations over the white dwarf structure to estimate the amount of 12 C that must be consumed to raise the white dwarf temperature, and hence to determine the net reduction of Y e during simmering. Second, we consider the effects of 22 Ne on flame speed. Carbon-oxygen white dwarfs contain 22 Ne formed from a-captures onto 14 N during core He burning in the progenitor star. In a white dwarf (Type Ta) supernova, the 22 Ne abundance determines, in part, the neutron-to-proton ratio and hence the abundance of radioactive 56 Ni that powers the lightcurve. The 22 Ne abundance also changes the burning rate and hence the laminar flame speed. We tabulate the flame speedup for different initial 12 C and 22 Ne abundances and for a range of densities. This increase in the laminar flame speed--about 30% for a 22 Ne mass fraction of 6%--affects the deflagration just after ignition near the center of the white dwarf, where the laminar speed of the flame dominates over the buoyant rise, and in regions of lower density ~10^7 g cm -3 where a transition to distributed burning is conjectured to occur. The increase in flame speed will decrease the density of any transition to distributed burning. Finally, we look at how a surface detonation affects the composition of nuclides across the supernovae remnant. Several scenarios have been proposed as to how this delayed detonation may actually occur but careful nucleosynthesis calculations to determine the isotopic abundances produced by these scenarios have not been done. The surface detonation produces a clear compositional gradient in elemental Ni in layers of the white dwarf that do not burn to nuclear statistical equilibrium (NSE). A number of nuclides show a gradient but when combined into elemental abundances Ni shows the largest change over the face of the star. The Ni abundance varies by as much as an order of magnitude across the star. Tins may be a way to observationally test detonation models.

High variability of dung beetle diversity patterns at four mountains of the Trans-Mexican Volcanic Belt

PubMed Central

Arriaga-Jiménez, Alfonsina; Halffter, Gonzalo

2018-01-01

Insect diversity patterns of high mountain ecosystems remain poorly studied in the tropics. Sampling dung beetles of the subfamilies Aphodiinae, Scarabaeinae, and Geotrupinae was carried out at four volcanoes in the Trans-Mexican Volcanic Belt (TMVB) in the Mexican transition zone at 2,700 and 3,400 MASL, and on the windward and leeward sides. Sampling units represented a forest–shrubland–pasture (FSP) mosaic typical of this mountain region. A total of 3,430 individuals of 29 dung beetle species were collected. Diversity, abundance and compositional similarity (CS) displayed a high variability at all scales; elevation, cardinal direction, or FSP mosaics did not show any patterns of higher or lower values of those measures. The four mountains were different regarding dispersion patterns and taxonomic groups, both for species and individuals. Onthophagus chevrolati dominated all four mountains with an overall relative abundance of 63%. CS was not related to distance among mountains, but when O. chevrolati was excluded from the analysis, CS values based on species abundance decreased with increasing distance. Speciation, dispersion, and environmental instability are suggested as the main drivers of high mountain diversity patterns, acting together at different spatial and temporal scales. Three species new to science were collected (>10% of all species sampled). These discoveries may indicate that speciation rate is high among these volcanoes—a hypothesis that is also supported by the elevated number of collected species with a restricted montane distribution. Dispersion is an important factor in driving species composition, although naturally limited between high mountains; horizontal colonization events at different time scales may best explain the observed species composition in the TMVB, complemented by vertical colonization events to a lesser extent. Environmental instability may be the main factor causing the high variability of diversity and abundance patterns found during sampling. Together, we interpret these results as indicating that species richness and composition in the high mountains of the TMVB may be driven by biogeographical history while variability in diversity is determined by ecological factors. We argue that current conservation strategies do not focus sufficiently on protecting high mountain fauna, and that there is a need for developing and applying new conservation concepts that take into account the high spatial and temporal variability of this system. PMID:29507842

Diversity and Abundance of the Denitrifying Microbiota in the Sediment of Eastern China Marginal Seas and the Impact of Environmental Factors.

PubMed

Gao, Minghong; Liu, Jiwen; Qiao, Yanlu; Zhao, Meixun; Zhang, Xiao-Hua

2017-04-01

Investigating the environmental influence on the community composition and abundance of denitrifiers in marine sediment ecosystem is essential for understanding of the ecosystem-level controls on the biogeochemical process of denitrification. In the present study, nirK-harboring denitrifying communities in different mud deposit zones of eastern China marginal seas (ECMS) were investigated via clone library analysis. The abundance of three functional genes affiliated with denitrification (narG, nirK, nosZ) was assessed by fluorescent quantitative PCR. The nirK-harboring microbiota were dominated by a few operational taxonomic units (OTUs), which were widely distributed in different sites with each site harboring their unique phylotypes. The mean abundance of nirK was significantly higher than that of narG and nosZ genes, and the abundance of narG was higher than that of nosZ. The inconsistent abundance profile of different functional genes along the process of denitrification might indicate that nitrite reduction occurred independently of denitrification in the mud deposit zones of ECMS, and sedimentary denitrification was accomplished by cooperation of different denitrifying species rather than a single species. Such important information would be missed when targeting only a single denitrifying functional gene. Analysis of correlation between abundance ratios and environmental factors revealed that the response of denitrifiers to environmental factors was not invariable in different mud deposit zones. Our results suggested that a comprehensive analysis of different denitrifying functional genes may gain more information about the dynamics of denitrifying microbiota in marine sediments.

High rate lithium-sulfur battery enabled by sandwiched single ion conducting polymer electrolyte

PubMed Central

Sun, Yubao; Li, Gai; Lai, Yuanchu; Zeng, Danli; Cheng, Hansong

2016-01-01

Lithium-sulfur batteries are highly promising for electric energy storage with high energy density, abundant resources and low cost. However, the battery technologies have often suffered from a short cycle life and poor rate stability arising from the well-known “polysulfide shuttle” effect. Here, we report a novel cell design by sandwiching a sp3 boron based single ion conducting polymer electrolyte film between two carbon films to fabricate a composite separator for lithium-sulfur batteries. The dense negative charges uniformly distributed in the electrolyte membrane inherently prohibit transport of polysulfide anions formed in the cathode inside the polymer matrix and effectively blocks polysulfide shuttling. A battery assembled with the composite separator exhibits a remarkably long cycle life at high charge/discharge rates. PMID:26898772

Predicting probability of occurrence and factors affecting distribution and abundance of three Ozark endemic crayfish species at multiple spatial scales

USGS Publications Warehouse

Nolen, Matthew S.; Magoulick, Daniel D.; DiStefano, Robert J.; Imhoff, Emily M.; Wagner, Brian K.

2014-01-01

We found that a range of environmental variables were important in predicting crayfish distribution and abundance at multiple spatial scales and their importance was species-, response variable- and scale dependent. We would encourage others to examine the influence of spatial scale on species distribution and abundance patterns.

Successive transitory distribution of Thaumarchaeota and partitioned distribution of Bathyarchaeota from the Pearl River estuary to the northern South China Sea.

PubMed

Zhou, Zhichao; Zhang, Guo-Xia; Xu, Yan-Bin; Gu, Ji-Dong

2018-06-26

Thaumarchaeota and Bathyarchaeota (formerly named Miscellaneous Crenarchaeotal Group, MCG) are globally occurring archaea playing potential roles in nitrogen and carbon cycling, especially in marine benthic biogeochemical cycle. Information on their distributional and compositional patterns could provide critical clues to further delineate their physiological and biochemical characteristics. Profiles of thaumarchaeotal and the total archaeal community in the northern South China Sea surface sediments revealed a successively transitional pattern of Thaumarchaeota composition using MiSeq sequencing. Shallow-sea sediment enriched phylotypes decreased gradually along the slope from estuarine and coastal marine region to the deep-sea, while deep-sea sediment enriched phylotypes showed a trend of increasing. Proportion of Thaumarchaeota within the total archaea increased with seawater depth. Phylotypes enriched in shallow- and deep-sea sediments were affiliated to OTUs originated from similar niches, suggesting that physiological adaption not geographical distance shaped the distribution of Thaumarchaeota lineages. Quantitative PCR also depicted a successive decrease of thaumarchaeotal 16S rRNA gene abundance from the highest at shallow-sea sites E708S and E709S (2.57 × 10 6 and 2.73 × 10 6  gene copies/g of dry sediment) to the lowest at deep-sea sites E525S and E407S (1.97 × 10 6 and 2.14 × 10 6  gene copies/g of dry sediment). Both of the abundance fractions of Bathyarchaeota subgroups (including subgroups 1, 6, 8, 10, 13, 15, 17, and ungrouped Bathyarchaeota) and the total Bathyarchaeota in the total archaea showed a negative distribution to seawater depth. Partitioned distribution of Bathyarchaeota fraction in the total archaea is documented for the first time in this study, and the shallow- and deep-sea Bathyarchaeota could account for 17.8 and 0.8%, respectively, on average. Subgroups 6 and 8, enriched subgroups in shallow-sea sediments, largely explained this partitioned distribution pattern according to seawater depth. Their prevalence in shallow-sea and suboxic estuarine sediments rather than deep-sea sediments hints that their metabolic properties of carbon metabolism are adapted to carbon substrates in these environments.

Waterfowl migration on Klamath Basin National Wildlife Refuges 1953-2001

USGS Publications Warehouse

Gilmer, David S.; Yee, Julie L.; Mauser, David M.; Hainline, James M.

2004-01-01

The Klamath Basin National Wildlife Refuge (NWR) complex, located in northeastern California and southern Oregon, is situated on a major Pacific Flyway migration corridor connecting waterfowl breeding grounds in the north with major wintering grounds in California and Mexico. The complex comprises five waterfowl refuges including Lower Klamath NWR, Tule Lake NWR, Upper Klamath NWR, Klamath Marsh NWR, and Clear Lake NWR, and one bald eagle refuge, Bear Valley NWR. Lower Klamath and Tule Lake NWRs are the largest refuges in the complex; historically, they supported some of the greatest autumn and spring concentrations of migrating waterfowl in North America. Starting in 1953, standardized waterfowl surveys from small aircraft have been conducted in autumn through spring. This report summarizes waterfowl migration activity (i.e., abundance, species composition, distribution on refuges, and chronology) over four time periods—the long-term (1953-2001), early (1953-76), recent (1977-2001), and the most recent (1998-2001)—to describe changing patterns of migration on Klamath Basin refuges from autumn 1953 to spring 2001.Over the long term, waterfowl abundance (birds per day) on the refuge complex averaged about 1.0 million in autumn and about 360,000 in spring. A record peak count of 5.8 million waterfowl was recorded September 24-25, 1958. Average abundance of autumn staging waterfowl for the refuge complex, after reaching record levels in the 1950s and early 1960s, began a decline that lasted until the 1980s. A gradual recovery occurred during the 1990s, but autumn abundance has not recovered to pre-1970 levels. In contrast to autumn, average spring abundance was generally lower in the early decades but has gradually increased through the 1990s, particularly on Lower Klamath NWR.Dabbling ducks represented an average of 68% of all waterfowl in autumn and 55% in spring for the long term. Northern pintail (Anas acuta) was dominant, representing 62% of all dabblers in autumn and 51% in spring. A significant decline in pintail abundance starting in the late 1950s altered waterfowl composition on Klamath Basin refuges. As pintail declined, other species such as mallard (Anas platyrhynchos) and green-winged teal (Anas crecca) increased in abundance. Although Arctic nesting geese, including white-fronted (Anser albifrons), cackling Canada (Branta canadensis minima), white geese (lesser snow [Chen caerulescens caerulescens], and Ross’s [Chen rossii]) have become less prominent in recent decades, they reached an historically high abundance during autumn in the 1960s and 1970s, particularly on Tule Lake NWR.Tule Lake NWR supported the highest average autumn waterfowl populations until surpassed by Lower Klamath NWR around 1980. During the recent period (1977-2001), Lower Klamath NWR accounted for 60% of all waterfowl using the refuge complex in autumn and 61% in spring. Habitat diversity and wetland productivity contributed to its greater waterfowl abundance. Tule Lake NWR supported the most geese over the long term, 79% in autumn and 66% in spring; however, total waterfowl abundance on this refuge in autumn has been in decline, likely because of reduced diversity and productivity of sumps in the refuge. Upper Klamath, Klamath Marsh, and Clear Lake NWRs accounted for less than 8% of total waterfowl use in autumn and spring but provided diverse habitats for migrants.Waterfowl use-days on Klamath Basin refuges typically peaked in mid-autumn, decreased as migrants passed through the basin, and then reached a lesser peak during spring passage. Waterfowl abundance reached a pronounced peak in autumn during the early period (1953-76), but spring peak buildup was much less pronounced. For the recent period the autumn peak was more subdued.Waterfowl abundance, species composition, and distribution on Klamath Basin refuges have fluctuated over the decades and have been influenced by events such as productivity on breeding grounds and habitat conditions on wintering grounds that cause shifts in migration patterns. A major challenge for the future appears to be the availability of adequate water for wetland management on Klamath Basin refuges.

Characteristics of Martian Crustal Materials and Implications for Magmatic Assimilation: Preliminary Re-Os Isotope and Highly Siderophile Element Abundance Data for Nakhlites and Tissint

NASA Astrophysics Data System (ADS)

Mari, N.; Riches, A. J. V.; Hallis, L. J.; Lee, M. R.

2017-07-01

This project, for the first time, aims to integrate nakhlite Os-isotope compositions and HSE abundance data with S-isotope compositions for sample fractions for which textural information is constrained prior to destructive analyses.

Seasonal distribution and abundance of fishes and decapod crustaceans in a Cape Cod estuary

USGS Publications Warehouse

Able, K.W.; Fahay, M.P.; Heck, K.L.; Roman, C.T.; Lazzari, M.A.; Kaiser, S.C.

2002-01-01

Sampling in several habitat types (sand/mud, eelgrass, sand, gravel, macroalgae/mud) during all seasons with a variety of gears in Nauset Marsh, Massachusetts during 1985-1987 found a fauna consisting of 35 fish and 10 decapod crustacean species. Although most of the abundant species were found in several habitat types, species richness and habitat use appeared to be highest for vegetated habitats (eelgrass, macroalgae). The fishes and decapods were numerically dominated by cold-water taxa; however, numerous fish species, represented by rare individuals of predominantly southern forms, enriched the fauna. Species composition of Nauset Marsh could be distinguished from estuaries south of Cape Cod and even from the south shore of the cape. Both fishes and decapods were most abundant during the summer, apparently due to the contributions from spring and summer spawning in the estuary and the adjacent Atlantic Ocean. The location of Nauset Marsh and other estuaries on Cape Cod provide a unique opportunity to evaluate the importance of this region as a faunal boundary to estuarine species.

Water on the surface of the Moon as seen by the Moon Mineralogy Mapper: Distribution, abundance, and origins

PubMed Central

Li, Shuai; Milliken, Ralph E.

2017-01-01

A new thermal correction model and experimentally validated relationships between absorption strength and water content have been used to construct the first global quantitative maps of lunar surface water derived from the Moon Mineralogy Mapper near-infrared reflectance data. We find that OH abundance increases as a function of latitude, approaching values of ~500 to 750 parts per million (ppm). Water content also increases with the degree of space weathering, consistent with the preferential retention of water originating from solar wind implantation during agglutinate formation. Anomalously high water contents indicative of interior magmatic sources are observed in several locations, but there is no global correlation between surface composition and water content. Surface water abundance can vary by ~200 ppm over a lunar day, and the upper meter of regolith may contain a total of ~1.2 × 1014 g of water averaged over the globe. Formation and migration of water toward cold traps may thus be a continuous process on the Moon and other airless bodies. PMID:28924612

Threshold responses of Blackside Dace (Chrosomus cumberlandensis) and Kentucky Arrow Darter (Etheostoma spilotum) to stream conductivity

USGS Publications Warehouse

Hitt, Nathaniel P.; Floyd, Michael; Compton, Michael; McDonald, Kenneth

2016-01-01

Chrosomus cumberlandensis (Blackside Dace [BSD]) and Etheostoma spilotum (Kentucky Arrow Darter [KAD]) are fish species of conservation concern due to their fragmented distributions, their low population sizes, and threats from anthropogenic stressors in the southeastern United States. We evaluated the relationship between fish abundance and stream conductivity, an index of environmental quality and potential physiological stressor. We modeled occurrence and abundance of KAD in the upper Kentucky River basin (208 samples) and BSD in the upper Cumberland River basin (294 samples) for sites sampled between 2003 and 2013. Segmented regression indicated a conductivity change-point for BSD abundance at 343 μS/cm (95% CI: 123–563 μS/cm) and for KAD abundance at 261 μS/cm (95% CI: 151–370 μS/cm). In both cases, abundances were negligible above estimated conductivity change-points. Post-hoc randomizations accounted for variance in estimated change points due to unequal sample sizes across the conductivity gradients. Boosted regression-tree analysis indicated stronger effects of conductivity than other natural and anthropogenic factors known to influence stream fishes. Boosted regression trees further indicated threshold responses of BSD and KAD occurrence to conductivity gradients in support of segmented regression results. We suggest that the observed conductivity relationship may indicate energetic limitations for insectivorous fishes due to changes in benthic macroinvertebrate community composition.

Diversity and abundance of human-pathogenic fungi associated with pigeon faeces in urban environments.

PubMed

Lee, Won Dong; Fong, Jonathan J; Eimes, John A; Lim, Young Woon

2017-09-01

Pathogenic fungi are a growing health concern worldwide, particularly in large, densely populated cities. The dramatic upsurge of pigeon populations in cities has been implicated in the increased incidence of invasive fungal infections. In this study, we used a culture-independent, high-throughput sequencing approach to describe the diversity of clinically relevant fungi (CRF) associated with pigeon faeces and map the relative abundance of CRF across Seoul, Korea. In addition, we tested whether certain geographical, sociological and meteorological factors were significantly associated with the diversity and relative abundance of CRF. Finally, we compared the CRF diversity of fresh and old pigeon faeces to identify the source of the fungi and the role of pigeons in dispersal. Our results demonstrated that both the composition and relative abundance of CRF are unevenly distributed across Seoul. The green area ratio and the number of multiplex houses were positively correlated with species diversity, whereas wind speed and number of households were negatively correlated. The number of workers and green area ratio were positively correlated with the relative abundance of CRF, whereas wind speed was negatively correlated. Because many CRF were absent in fresh faeces, we inferred that most species cannot survive the gastrointestinal tract of pigeons and instead are likely transmitted through soil or air and use pigeon faeces as a substrate for proliferation. © 2017 John Wiley & Sons Ltd.

[Bacterial diversity within different sections of summer sea-ice samples from the Prydz Bay, Antarctica].

PubMed

Ma, Jifei; Du, Zongjun; Luo, Wei; Yu, Yong; Zeng, Yixin; Chen, Bo; Li, Huirong

2013-02-04

In order to assess bacterial abundance and diversity within three different sections of summer sea-ice samples collected from the Prydz Bay, Antarctica. Fluorescence in situ hybridization was applied to determine the proportions of Bacteria in sea-ice. Bacterial community composition within sea ice was analyzed by 16S rRNA gene clone library construction. Correlation analysis was performed between the physicochemical parameters and the bacterial diversity and abundance within sea ice. The result of fluorescence in situ hybridization shows that bacteria were abundant in the bottom section, and the concentration of total organic carbon, total organic nitrogen and phosphate may be the main factors for bacterial abundance. In bacterial 16S rRNA gene libraries of sea-ice, nearly complete 16S rRNA gene sequences were grouped into three distinct lineages of Bacteria (gamma-Proteobacteria, alpha-Proteobacteria and Bacteroidetes). Most clone sequences were related to cultured bacterial isolates from the marine environment, arctic and Antarctic sea-ice with high similarity. The member of Bacteroidetes was not detected in the bottom section of sea-ice. The bacterial communities within sea-ice were little heterogeneous at the genus-level between different sections, and the concentration of NH4+ may cause this distribution. The number of bacteria was abundant in the bottom section of sea-ice. Gamma-proteobacteria was the dominant bacterial lineage in sea-ice.

Local and Landscape Drivers of Parasitoid Abundance, Richness, and Composition in Urban Gardens.

PubMed

Burks, Julia M; Philpott, Stacy M

2017-04-01

Urbanization negatively affects biodiversity, yet some urban habitat features can support diversity. Parasitoid wasps, an abundant and highly diverse group of arthropods, can inhabit urban areas and do well in areas with higher host abundance, floral resources, or local or landscape complexity. Parasitoids provide biological control services in many agricultural habitats, yet few studies have examined diversity and abundance of parasitoids in urban agroecosystems to understand how to promote conservation and function. We examined the local habitat and landscape drivers of parasitoid abundance, superfamily and family richness, and parasitoid composition in urban gardens in the California central coast. Local factors included garden size, ground cover type, herbaceous plant species, and number of trees and shrubs. Landscape characteristics included land cover and landscape diversity around gardens. We found that garden size, mulch cover, and urban cover within 500 m of gardens predicted increases in parasitoid abundance within gardens. The height of herbaceous vegetation and tree and shrub richness predicted increases in superfamily and family richness whereas increases in urban cover resulted in declines in parasitoid richness. Abundance of individual superfamilies and families responded to a wide array of local and landscape factors, sometimes in opposite ways. Composition of parasitoid communities responded to changes in garden size, herbaceous plant cover, and number of flowers. Thus, both local scale management and landscape planning may impact the abundance, diversity, and community composition of parasitoids in urban gardens, and may result in differences in the effectiveness of parasitoids in biological control. © The Authors 2017. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Mercury Abundances and Isotopic Compositions in the Murchison (CM) and Allende (CV)Carbonaceous Chondrites

NASA Technical Reports Server (NTRS)

Lauretta, D. S.; Klaue, B.; Blum, J. D.; Buseck, P. R.

2001-01-01

The abundance and isotopic composition of Hg was determined in bulk samples of both the Murchison (CM) and Allende (CV) carbonaceous chondrites using single- and multi-collector inductively coupled plasma mass spectrometry (ICP-MS). The bulk abundances of Hg are 294 6 15 ng/g in Murchison and 30.0 6 1.5 ng/g in Allende. These values are within the range of previous measurements of bulk Hg abundances by neutron activation analysis (NAA). Prior studies suggested that both meteorites contain isotopically anomalous Hg, with d l 96/202Hg values for the anomalous, thermal-release components from bulk samples ranging from 2260 %o to 1440 9/00 in Murchison and from 2620 9/00 to 1540 9/00 in Allende (Jovanovic and Reed, 1976a; 1976b; Kumar and Goel, 1992). Our multi-collector ICP-MS measurements suggest that the relative abundances of all seven stable Hg isotopes in both meteorites are identical to terrestrial values within 0.2 to 0.5 9/00m. On-line thermal-release experiments were performed by coupling a programmable oven with the singlecollector ICP-MS. Powdered aliquots of each meteorite were linearly heated from room temperature to 900 C over twenty-five minutes under an Ar atmosphere to measure the isotopic composition of Hg released fiom the meteorites as a h c t i o n of temperature. In separate experiments, the release profiles of S and Se were determined simultaneously with Hg to constrain the Hg distribution within the meteorites and to evaluate the possibility of Se interferences in previous NAA studies. The Hg-release patterns differ between Allende and Murchison. The Hg-release profile for Allende contains two distinct peaks, at 225" and 343"C, whereas the profile for Murchison has only one peak, at 344 C. No isotopically anomalous Hg was detected in the thermal-release experiments at a precision level of 5 to 30 9/00, depending on the isotope ratio. In both meteorites the Hg peak at ;340"C correlates with a peak in the S-release profile. This correlation suggests that Hg is associated with S-bearing phases and, thus, that HgS is a major Hg-bearing phase in both meteorites. The Hg peak at 225 C for Allende is similar to release patterns of physically adsorbed Hg on silicate and metal grains.

How Habitat Change and Rainfall Affect Dung Beetle Diversity in Caatinga, a Brazilian Semi-Arid Ecosystem

PubMed Central

Liberal, Carolina Nunes; de Farias, Ângela Maria Isidro; Meiado, Marcos Vinicius; Filgueiras, Bruno K. C.; Iannuzzi, Luciana

2011-01-01

The aim of the present study was to evaluate how dung beetle communities respond to both environment and rainfall in the Caatinga, a semi-arid ecosystem in northeastern Brazil. The communities were sampled monthly from May 2006 to April 2007 using pitfall traps baited with human feces in two environments denominated “land use area” and “undisturbed area.” Abundance and species richness were compared between the two environments and two seasons (dry and wet season) using a generalized linear model with a Poisson error distribution. Diversity was compared between the two environments (land use area and undisturbed area) and seasons (dry and wet) using the Two-Way ANOVA test. Non-metric multidimensional scaling was performed on the resemblance matrix of Bray-Curtis distances (with 1000 random restarts) to determine whether disturbance affected the abundance and species composition of the dung beetle communities. Spearman's correlation coefficient was used to determine whether rainfall was correlated with abundance and species richness. A total of 1097 specimens belonging to 13 species were collected. The most abundant and frequent species was Dichotomius geminatus Arrow (Coleoptera: Scarabaeidae). The environment exerted an influence over abundance. Abundance and diversity were affected by season, with an increase in abundance at the beginning of the wet season. The correlation coefficient values were high and significant for abundance and species richness, which were both correlated to rainfall. In conclusion, the restriction of species to some environments demonstrates the need to preserve these areas in order to avoid possible local extinction. Therefore, in extremely seasonable environments, such as the Caatinga, seasonal variation strongly affects dung beetle communities. PMID:22224924

How habitat change and rainfall affect dung beetle diversity in Caatinga, a Brazilian semi-arid ecosystem.

PubMed

Liberal, Carolina Nunes; de Farias, Ângela Maria Isidro; Meiado, Marcos Vinicius; Filgueiras, Bruno K C; Iannuzzi, Luciana

2011-01-01

The aim of the present study was to evaluate how dung beetle communities respond to both environment and rainfall in the Caatinga, a semi-arid ecosystem in northeastern Brazil. The communities were sampled monthly from May 2006 to April 2007 using pitfall traps baited with human feces in two environments denominated "land use area" and "undisturbed area." Abundance and species richness were compared between the two environments and two seasons (dry and wet season) using a generalized linear model with a Poisson error distribution. Diversity was compared between the two environments (land use area and undisturbed area) and seasons (dry and wet) using the Two-Way ANOVA test. Non-metric multidimensional scaling was performed on the resemblance matrix of Bray-Curtis distances (with 1000 random restarts) to determine whether disturbance affected the abundance and species composition of the dung beetle communities. Spearman's correlation coefficient was used to determine whether rainfall was correlated with abundance and species richness. A total of 1097 specimens belonging to 13 species were collected. The most abundant and frequent species was Dichotomius geminatus Arrow (Coleoptera: Scarabaeidae). The environment exerted an influence over abundance. Abundance and diversity were affected by season, with an increase in abundance at the beginning of the wet season. The correlation coefficient values were high and significant for abundance and species richness, which were both correlated to rainfall. In conclusion, the restriction of species to some environments demonstrates the need to preserve these areas in order to avoid possible local extinction. Therefore, in extremely seasonable environments, such as the Caatinga, seasonal variation strongly affects dung beetle communities.

Messages from the Reversing Layer: Clues to Planet Formation in Spectral Abundances

NASA Astrophysics Data System (ADS)

Brewer, John Michael; Fischer, Debra; Basu, Sarbani

2017-01-01

The abundances of elements in the protoplanetary disk evolve over time, but stellar abundances will reflect the initial chemical composition of the disk and this can provide constraints on the range of possible outcomes for planet interiors. Rocky planet habitability depends not just on the availability of liquid water, but also on volcansim and plate tectonics that can stabilize the climate on long timescales. The slow evolution of abundances in stellar photospheres, particularly abundance ratios between elements, makes them ideal laboratories to study primordial disk compositions.In my thesis work, I developed a new spectroscopic analysis procedure that derives gravities consistent with asteroseismology to within 0.05 dex as well as abundances for 15 elements. Using this procedure, we analyzed and published a catalog of accurate stellar parameters and precise abundances for more than 1600 stars and used those to investigate questions of planet formation. The C/O and Mg/Si ratios in the solar neighborhood could affect rocky planet habitability. For lucky cases where planet atmosphereic abundances can be measured, the stellar host C/O and [O/H] ratios carry information about the formation site and migration of hot Jupiters. I will present results on both rocky planet compositions and hot Jupiter migration and discuss how they can help us identify potentially habitable systems and discriminate between different planet formation models.

The spatial distribution of C3 and C4 grasses in North America through the next century

NASA Astrophysics Data System (ADS)

Cotton, J. M.; Mosier, T. M.; Cerling, T. E.; Ehleringer, J. R.; Hoppe, K. A.; Still, C. J.

2014-12-01

C4 grasses currently cover ~18% of the earth's surface and are economically important as food sources, but their distributions are likely to change with future climate changes. As a result of the opposing impacts of atmospheric CO2 and temperature on C3 and C4 physiology, future changes to the productivity and distributions of these grasses have remained unclear. We have used past and present tooth enamel, collagen, and bone carbon isotope ratios (δ13C) of Bison and Mammoth grazers to record the δ13C values of their diet, and the abundance of C3 and C4 vegetation in these habitats. Thus, the δ13C values of bison and mammoth tissues serve as a proxy for vegetation composition across North America through time. We combine these isotope data with ensemble CMIP5 climate model outputs, eight different climatic and fire predictor variables and advanced statistical techniques to model the spatial distribution of C3 and C4 grasses up through the year 2100 for two different emissions scenarios. Using the Random Forest algorithm, our model explains 91% of the spatial and temporal isotopic variability in bison and mammoth tissues and infers that mean summer temperature is the strongest predictor of all climate variables. For the emission scenario RCP4.5, in which atmospheric CO2 levels are predicted to rise to ~540 ppm by 2100, we find decreases in the abundance of C4 grasses of up to 30% in the south-central Great Plains and the Florida peninsula, and increases of up to 50% in the northern Great Plains. For the RCP8.5 scenario, in which atmospheric CO2 levels are expected to rise to ~930 ppm by 2100, our model predicts minor decreases in the abundance of C4 grasses in Texas and Oklahoma, but increases of 30-50% over the majority of the Great Plains. The overall effect of these changes is a homogenization of the Great Plains ecoregion in terms of grassland type distributions, and the loss of the highest abundance of C4 ecosystems of the panhandles of Texas, Oklahoma and western Kansas. These results have important implications for future changes to insect and mammalian biodiversity and trophic interactions across the Great Plains of North America.

Factors responsible for Ixodes ricinus nymph abundance: Are soil features indicators of tick abundance in a French region where Lyme borreliosis is endemic?

PubMed

Goldstein, Valérie; Boulanger, Nathalie; Schwartz, Dominique; George, Jean-Claude; Ertlen, Damien; Zilliox, Laurence; Schaeffer, Mickaël; Jaulhac, Benoît

2018-05-01

In Europe, the hard tick Ixodes ricinus (Acari: Ixodidae) is the main vector of Lyme borreliosis spirochetes (Borrelia burgdorferi sensu lato group). A field study was conducted to evaluate the abundance of Ixodes nymphs in the French region of Alsace, where Lyme borreliosis is endemic, and to determine whether environmental factors such as soil moisture and composition may be associated with nymph abundance. In the ten sites studied, ticks were collected by drag sampling from March to October in 2013 and 2014. Temperature, relative humidity, saturation deficit, soil pH, humus composition and type of vegetation were recorded at each site. The abundance of I. ricinus was highly variable from one site to another. Inter-annual variations were also observed, since the nymph abundance were higher in 2013 than in 2014. This study shows that humus type can be indicative of nymph abundance. Three types of humus were observed: (1) moder, (2) mull, and (3) mull-moder humus. One of them, moder humus, which is characterized by a thick layer of fragmented leaves, was found in multivariate analyses to be strongly associated with the nymph abundance. This study demonstrates that factors such as saturation deficit do not suffice to explain the differences in nymph abundance among sites. The composition of the soil and especially the type of humus should also be taken into consideration when assessing acarological risk. Copyright © 2018 Elsevier GmbH. All rights reserved.

Isotopic compositions of the elements 2013 (IUPAC Technical Report)

USGS Publications Warehouse

Meija, Juris; Coplen, Tyler B.; Berglund, Michael; Brand, Willi A.; De Bièvre, Paul; Gröning, Manfred; Holden, Norman E.; Irrgeher, Johanna; Loss, Robert D.; Walczyk, Thomas; Prohaska, Thomas

2016-01-01

The Commission on Isotopic Abundances and Atomic Weights (ciaaw.org) of the International Union of Pure and Applied Chemistry (iupac.org) has revised the Table of Isotopic Compositions of the Elements (TICE). The update involved a critical evaluation of the recent published literature. The new TICE 2013 includes evaluated data from the “best measurement” of the isotopic abundances in a single sample, along with a set of representative isotopic abundances and uncertainties that accommodate known variations in normal terrestrial materials.

Book review: A new view on the species abundance distribution

USGS Publications Warehouse

DeAngelis, Donald L.

2018-01-01

The sampled relative abundances of species of a taxonomic group, whether birds, trees, or moths, in a natural community at a particular place vary in a way that suggests a consistent underlying pattern, referred to as the species abundance distribution (SAD). Preston [1] conjectured that the numbers of species, plotted as a histogram of logarithmic abundance classes called octaves, seemed to fit a lognormal distribution; that is, the histograms look like normal distributions, although truncated on the left-hand, or low-species-abundance, end. Although other specific curves for the SAD have been proposed in the literature, Preston’s lognormal distribution is widely cited in textbooks and has stimulated attempts at explanation. An important aspect of Preston’s lognormal distribution is the ‘veil line’, a vertical line drawn exactly at the point of the left-hand truncation in the distribution, to the left of which would be species missing from the sample. Dewdney rejects the lognormal conjecture. Instead, starting with the long-recognized fact that the number of species sampled from a community, when plotted as histograms against population abundance, resembles an inverted J, he presents a mathematical description of an alternative that he calls the ‘J distribution’, a hyperbolic density function truncated at both ends. When multiplied by species richness, R, it becomes the SAD of the sample.

Spatial distribution and succession of epiphytes on Tsuga heterophylla (western hemlock) in an old-growth Douglas-fir forest

Treesearch

Betsy Lyons; Nalini M. Nadkarni; Malcolm P. North

2000-01-01

We examined the distribution and abundance of nonvascular epiphytes on western hemlock trees in an oldgrowth coniferous forest focusing on patterns of epiphyte distribution at different spatial scales, epiphyte abundance amongst trees differing in size, and crown structures associated with epiphyte abundance. Total epiphyte cover was greatest in four canopy...

Spatial abundance models and seasonal distribution for guanaco (Lama guanicoe) in central Tierra del Fuego, Argentina.

PubMed

Flores, Celina E; Deferrari, Guillermo; Collado, Leonardo; Escobar, Julio; Schiavini, Adrián

2018-01-01

Spatially explicit modelling allows to estimate population abundance and predict species' distribution in relation to environmental factors. Abiotic factors are the main determinants of a herbivore´s response to environmental heterogeneity on large spatiotemporal scales. We assessed the influence of elevation, geographic location and distance to the coast on the seasonal abundance and distribution of guanaco (Lama guanicoe) in central Tierra del Fuego, by means of spatially explicit modelling. The estimated abundance was 23,690 individuals for the non-breeding season and 33,928 individuals for the breeding season. The factors influencing distribution and abundance revealed to be the elevation for the non-breeding season, and the distance to the coast and geographic location for the breeding season. The southwest of the study area presented seasonal abundance variation and the southeast and northeast presented high abundance during both seasons. The elevation would be the driving factor of guanaco distribution, as individuals move to lower areas during the non-breeding season and ascend to high areas during the breeding season. Our results confirm that part of the guanaco population performs seasonal migratory movements and that the main valleys present important wintering habitats for guanacos as well as up-hill zones during summer. This type of study would help to avoid problems of scale mismatch and achieve better results in management actions and is an example of how to assess important seasonal habitats from evaluations of abundance and distribution patterns.

Spatial abundance models and seasonal distribution for guanaco (Lama guanicoe) in central Tierra del Fuego, Argentina

PubMed Central

Deferrari, Guillermo; Collado, Leonardo; Escobar, Julio; Schiavini, Adrián

2018-01-01

Spatially explicit modelling allows to estimate population abundance and predict species’ distribution in relation to environmental factors. Abiotic factors are the main determinants of a herbivore´s response to environmental heterogeneity on large spatiotemporal scales. We assessed the influence of elevation, geographic location and distance to the coast on the seasonal abundance and distribution of guanaco (Lama guanicoe) in central Tierra del Fuego, by means of spatially explicit modelling. The estimated abundance was 23,690 individuals for the non-breeding season and 33,928 individuals for the breeding season. The factors influencing distribution and abundance revealed to be the elevation for the non-breeding season, and the distance to the coast and geographic location for the breeding season. The southwest of the study area presented seasonal abundance variation and the southeast and northeast presented high abundance during both seasons. The elevation would be the driving factor of guanaco distribution, as individuals move to lower areas during the non-breeding season and ascend to high areas during the breeding season. Our results confirm that part of the guanaco population performs seasonal migratory movements and that the main valleys present important wintering habitats for guanacos as well as up-hill zones during summer. This type of study would help to avoid problems of scale mismatch and achieve better results in management actions and is an example of how to assess important seasonal habitats from evaluations of abundance and distribution patterns. PMID:29782523

Ionization correction factors for H II regions in blue compact dwarf galaxies

NASA Astrophysics Data System (ADS)

Holovatyi, V. V.; Melekh, B. Ya.

2002-08-01

Energy distributions in the spectra of the ionizing nuclei of H II regions beyond λ <= 91.2 nm were calculated. A grid of photoionization models of 270 H II regions was constructed. The free parameters of the model grid are the hydrogen density nH in the nebular gas, filling factor, energy Lc-spectrum of ionizing nuclei, and metallicity. The chemical composition from the studies of Izotov et al. were used for model grid initialization. The integral linear spectra calculated for the photoionization models were used to determine the concentration ne, temperatures Te of electrons, and ionic concentrations n(A+i)/n(H+) by the nebular gas diagnostic method. The averaged relative ionic abundances n(A+i)/n(H+) thus calculated were used to determine new expressions for ionization correction factors which we recommend for the determination of abundances in the H II regions of blue compact dwarf galaxies.

Microbial community structure of different electrode materials in constructed wetland incorporating microbial fuel cell.

PubMed

Wang, Junfeng; Song, Xinshan; Wang, Yuhui; Abayneh, Befkadu; Ding, Yi; Yan, Denghua; Bai, Junhong

2016-12-01

The microbial fuel cell coupled with constructed wetland (CW-MFC) microcosms were operated under fed-batch mode for evaluating the effect of electrode materials on bioelectricity generation and microbial community composition. Experimental results indicated that the bioenergy output in CW-MFC increased with the substrate concentration; maximum average voltage (177mV) was observed in CW-MFC with carbon fiber felt (CFF). In addition, the four different materials resulted in the formation of significantly different microbial community distribution around the anode electrode. The relative abundance of Proteobacteria in CFF and foamed nickel (FN) was significantly higher than that in stainless steel mesh (SSM) and graphite rod (GR) samples. Notably, the findings indicate that CW-MFC utilizing FN anode electrode could apparently improve relative abundance of Dechloromonas, which has been regarded as a denitrifying and phosphate accumulating microorganism. Copyright © 2016 Elsevier Ltd. All rights reserved.

The dominance of introduced plant species in the diets of migratory Galapagos tortoises increases with elevation on a human-occupied island

USGS Publications Warehouse

Blake, Stephen; Guézou, Anne; Deem, Sharon L.; Yackulic, Charles B.; Cabrera, Fredy

2015-01-01

The distribution of resources and food selection are fundamental to the ecology, life history, physiology, population dynamics, and conservation of animals. Introduced plants are changing foraging dynamics of herbivores in many ecosystems often with unknown consequences. Galapagos tortoises, like many herbivores, undertake migrations along elevation gradients driven by variability in vegetation productivity which take them into upland areas dominated by introduced plants. We sought to characterize diet composition of two species of Galapagos tortoises, focussing on how the role of introduced forage species changes over space and the implications for tortoise conservation. We quantified the distribution of tortoises with elevation using GPS telemetry. Along the elevation gradient, we quantified the abundance of introduced and native plant species, estimated diet composition by recording foods consumed by tortoises, and assessed tortoise physical condition from body weights and blood parameter values. Tortoises ranged between 0 and 429 m in elevation over which they consumed at least 64 plant species from 26 families, 44 percent of which were introduced species. Cover of introduced species and the proportion of introduced species in tortoise diets increased with elevation. Introduced species were positively selected for by tortoises at all elevations. Tortoise physical condition was either consistent or increased with elevation at the least biologically productive season on Galapagos. Santa Cruz tortoises are generalist herbivores that have adapted their feeding behavior to consume many introduced plant species that has likely made a positive contribution to tortoise nutrition. Some transformed habitats that contain an abundance of introduced forage species are compatible with tortoise conservation.

Microbial community dynamics of an urban drinking water distribution system subjected to phases of chloramination and chlorination treatments.

PubMed

Hwang, Chiachi; Ling, Fangqiong; Andersen, Gary L; LeChevallier, Mark W; Liu, Wen-Tso

2012-11-01

Water utilities in parts of the U.S. control microbial regrowth in drinking water distribution systems (DWDS) by alternating postdisinfection methods between chlorination and chloramination. To examine how this strategy influences drinking water microbial communities, an urban DWDS (population ≅ 40,000) with groundwater as the source water was studied for approximately 2 years. Water samples were collected at five locations in the network at different seasons and analyzed for their chemical and physical characteristics and for their microbial community composition and structure by examining the 16S rRNA gene via terminal restriction fragment length polymorphism and DNA pyrosequencing technology. Nonmetric multidimension scaling and canonical correspondence analysis of microbial community profiles could explain >57% of the variation. Clustering of samples based on disinfection types (free chlorine versus combined chlorine) and sampling time was observed to correlate to the shifts in microbial communities. Sampling location and water age (<21.2 h) had no apparent effects on the microbial compositions of samples from most time points. Microbial community analysis revealed that among major core populations, Cyanobacteria, Methylobacteriaceae, Sphingomonadaceae, and Xanthomonadaceae were more abundant in chlorinated water, and Methylophilaceae, Methylococcaceae, and Pseudomonadaceae were more abundant in chloraminated water. No correlation was observed with minor populations that were detected frequently (<0.1% of total pyrosequences), which were likely present in source water and survived through the treatment process. Transient microbial populations including Flavobacteriaceae and Clostridiaceae were also observed. Overall, reversible shifts in microbial communities were especially pronounced with chloramination, suggesting stronger selection of microbial populations from chloramines than chlorine.

High Levels of Sediment Contamination Have Little Influence on Estuarine Beach Fish Communities

PubMed Central

McKinley, Andrew C.; Dafforn, Katherine A.; Taylor, Matthew D.; Johnston, Emma L.

2011-01-01

While contaminants are predicted to have measurable impacts on fish assemblages, studies have rarely assessed this potential in the context of natural variability in physico-chemical conditions within and between estuaries. We investigated links between the distribution of sediment contamination (metals and PAHs), physico-chemical variables (pH, salinity, temperature, turbidity) and beach fish assemblages in estuarine environments. Fish communities were sampled using a beach seine within the inner and outer zones of six estuaries that were either heavily modified or relatively unmodified by urbanization and industrial activity. All sampling was replicated over two years with two periods sampled each year. Shannon diversity, biomass and abundance were all significantly higher in the inner zone of estuaries while fish were larger on average in the outer zone. Strong differences in community composition were also detected between the inner and outer zones. Few differences were detected between fish assemblages in heavily modified versus relatively unmodified estuaries despite high concentrations of sediment contaminants in the inner zones of modified estuaries that exceeded recognized sediment quality guidelines. Trends in species distributions, community composition, abundance, Shannon diversity, and average fish weight were strongly correlated to physico-chemical variables and showed a weaker relationship to sediment metal contamination. Sediment PAH concentrations were not significantly related to the fish assemblage. These findings suggest that variation in some physico-chemical factors (salinity, temperature, pH) or variables that co-vary with these factors (e.g., wave activity or grain size) have a much greater influence on this fish assemblage than anthropogenic stressors such as contamination. PMID:22039470

Microbial Community Dynamics of an Urban Drinking Water Distribution System Subjected to Phases of Chloramination and Chlorination Treatments

PubMed Central

Hwang, Chiachi; Ling, Fangqiong; Andersen, Gary L.; LeChevallier, Mark W.

2012-01-01

Water utilities in parts of the U.S. control microbial regrowth in drinking water distribution systems (DWDS) by alternating postdisinfection methods between chlorination and chloramination. To examine how this strategy influences drinking water microbial communities, an urban DWDS (population ≅ 40,000) with groundwater as the source water was studied for approximately 2 years. Water samples were collected at five locations in the network at different seasons and analyzed for their chemical and physical characteristics and for their microbial community composition and structure by examining the 16S rRNA gene via terminal restriction fragment length polymorphism and DNA pyrosequencing technology. Nonmetric multidimension scaling and canonical correspondence analysis of microbial community profiles could explain >57% of the variation. Clustering of samples based on disinfection types (free chlorine versus combined chlorine) and sampling time was observed to correlate to the shifts in microbial communities. Sampling location and water age (<21.2 h) had no apparent effects on the microbial compositions of samples from most time points. Microbial community analysis revealed that among major core populations, Cyanobacteria, Methylobacteriaceae, Sphingomonadaceae, and Xanthomonadaceae were more abundant in chlorinated water, and Methylophilaceae, Methylococcaceae, and Pseudomonadaceae were more abundant in chloraminated water. No correlation was observed with minor populations that were detected frequently (<0.1% of total pyrosequences), which were likely present in source water and survived through the treatment process. Transient microbial populations including Flavobacteriaceae and Clostridiaceae were also observed. Overall, reversible shifts in microbial communities were especially pronounced with chloramination, suggesting stronger selection of microbial populations from chloramines than chlorine. PMID:22941076

Origin and mixing timescale of Earth's late veneer

NASA Astrophysics Data System (ADS)

Prescher, C.; Allu Peddinti, D.; Bell, E. A.; Bello, L.; Cernok, A.; Ghosh, N.; Tucker, J.; Wielicki, M. M.; Zahnle, K. J.

2012-12-01

Experimental studies on the partitioning behavior of highly siderophile elements (HSE) between silicate and metallic melts imply that the Earth's mantle should have been highly depleted in these elements by core formation in an early magma ocean. However, present HSE contents of the Earth's mantle are ~3 orders of magnitude higher than that expected by experiments. The apparent over-abundance of HSE has commonly been explained by the addition of meteoritic material in the "late veneer" which describes the exogenous mass addition following the moon forming impact and concluding with the late heavy bombardment at ~3.8-3.9 Ga. The strongest evidence for this theory is that the platinum group element (PGE) contents in today's mantle are present in chondritic relative abundances, as opposed to a fractionated pattern expected with metal-silicate partitioning. Archean komatiites indicate that the PGE content of the Earth's mantle increased from about half their present abundances at 3.5 Ga to their present abundances at 2.9 Ga. This secular increase in PGE content suggests a progressive mixing of the late veneer material into the Earth's mantle. However, this time scale also implies that the whole mantle was relatively well mixed by 2.9 Ga. We use a compilation of existing isotopic and trace element data in order to constrain the origin and composition of the late veneer. We use PGE abundances, W abundances and W isotopic compositions in chondritic meteorites and the primitive upper mantle to compute the amount of mass delivered during the late veneer and find the late veneer mass to be ~0.6 % the mass of the bulk silicate Earth (consistent with earlier estimates). We also use the 187Re-187Os and 190Pt-186Os systems to constrain the composition and timing of delivery of the impacting population. We model the efficiency of mantle mixing in this time frame by using 3-dimensional numerical geodynamical simulations and geochemical constraints. Initial parameters include the amount of mass delivered in the late veneer and the Archean internal heating which is at least 4 times higher than the present values, due to the higher abundance of radioactive elements. Another important parameter is the mechanism of mass addition to the Earth. We test three end-member scenarios: (1) a single very large impactor accounting for the entire mass addition, (2) sprinkling of a large number of small impactors over the whole Earth which then mix into the mantle, or (3) by using a size/frequency distribution estimated from the lunar cratering record and corrected for the difference in gravitational cross section of the Earth and the Moon. This project results from collaborations begun at the CIDER II workshop held at KITP, UCSB, 2012.

Effects of growth phase on the membrane lipid composition of the thaumarchaeon Nitrosopumilus maritimus and their implications for archaeal lipid distributions in the marine environment

NASA Astrophysics Data System (ADS)

Elling, Felix J.; Könneke, Martin; Lipp, Julius S.; Becker, Kevin W.; Gagen, Emma J.; Hinrichs, Kai-Uwe

2014-09-01

The characteristic glycerol dibiphytanyl glycerol tetraether membrane lipids (GDGTs) of marine ammonia-oxidizing archaea (AOA) are widely used as biomarkers for studying their occurrence and distribution in marine environments and for reconstructing past sea surface temperatures using the TEX86 index. Despite an increasing use of GDGT biomarkers in microbial ecology and paleoceanography, the physiological and environmental factors influencing lipid composition in AOA, in particular the cyclization of GDGTs, remain unconstrained. We investigated the effect of metabolic state on the composition of intact polar and core lipids and the resulting TEX86 paleothermometer in pure cultures of the marine AOA Nitrosopumilus maritimus as a function of growth phase. The cellular lipid content ranged from 0.9 to 1.9 fg cell-1 and increased during growth but was lower in the stationary phases, indicating changes in average cell size in response to metabolic status. The relative abundances of monoglycosidic GDGTs increased from 27% in early growth phase to 60% in late stationary phase, while monohydroxylated GDGTs increased only slightly. The proportions of characteristic hexose-phosphohexose GDGTs were up to 7-fold higher during growth than in stationary phase, suggesting that they are valuable biomarkers for the metabolically active fraction of AOA assemblages in the environment. Methoxy archaeol was identified as novel, genuine archaeal lipid of yet unknown function; it is one of the most abundant single compounds in the lipidome of N. maritimus. TEX86 values of individual intact GDGTs and total GDGTs differed substantially, were generally lower during early and late growth phases than in stationary phase, and did not reflect growth temperature. Consequently, our results strongly suggest that biosynthesis is at least partially responsible for the systematic offsets in TEX86 values between different intact polar GDGT classes observed previously in environmental samples. Nevertheless, differences in degradation rates of intact polar GDGTs may influence the TEX86 index because the intact polar lipid precursors differ for individual core GDGTs and moreover their relative abundances change with growth stage, which may result in distinct release rates of core GDGTs from their polar precursors. Overall, our findings stress the need to accurately describe the factors influencing GDGT cyclization in thaumarchaea and thus paleotemperature reconstructions.

Molecular distribution and compound-specific stable carbon isotopic composition of dicarboxylic acids, oxocarboxylic acids and α-dicarbonyls in PM2.5 from Beijing, China

NASA Astrophysics Data System (ADS)

Zhao, Wanyu; Kawamura, Kimitaka; Yue, Siyao; Wei, Lianfang; Ren, Hong; Yan, Yu; Kang, Mingjie; Li, Linjie; Ren, Lujie; Lai, Senchao; Li, Jie; Sun, Yele; Wang, Zifa; Fu, Pingqing

2018-02-01

This study investigates the seasonal variation, molecular distribution and stable carbon isotopic composition of diacids, oxocarboxylic acids and α-dicarbonyls to better understand the sources and formation processes of fine aerosols (PM2.5) in Beijing. The concentrations of total dicarboxylic acids varied from 110 to 2580 ng m-3, whereas oxoacids (9.50-353 ng m-3) and dicarbonyls (1.50-85.9 ng m-3) were less abundant. Oxalic acid was found to be the most abundant individual species, followed by succinic acid or occasionally by terephthalic acid (tPh), a plastic waste burning tracer. Ambient concentrations of phthalic acid (37.9 ± 27.3 ng m-3) and tPh (48.7 ± 51.1 ng m-3) were larger in winter than in other seasons, illustrating that fossil fuel combustion and plastic waste incineration contribute more to wintertime aerosols. The year-round mass concentration ratios of malonic acid to succinic acid (C3 / C4) were relatively low by comparison with those in other urban aerosols and remote marine aerosols. The values were less than or equal to unity in Beijing, implying that the degree of photochemical formation of diacids in Beijing is insignificant. Moreover, strong correlation coefficients of major oxocarboxylic acids and α-dicarbonyls with nss-K+ suggest that biomass burning contributes significantly to these organic acids and related precursors. The mean δ13C value of succinic acid is the highest among all species, with values of -17.1 ± 3.9 ‰ (winter) and -17.1 ± 2.0 ‰ (spring), while malonic acid is more enriched in 13C than others in autumn (-17.6 ± 4.6 ‰) and summer (-18.7 ± 4.0 ‰). The δ13C values of major species in Beijing aerosols are generally lower than those in the western North Pacific atmosphere, the downwind region, which indicates that stable carbon isotopic compositions of diacids depend on their precursor sources in Beijing. Therefore, our study demonstrates that in addition to photochemical oxidation, high abundances of diacids, oxocarboxylic acids and α-dicarbonyls in Beijing are largely associated with anthropogenic primary emissions, such as biomass burning, fossil fuel combustion and plastic waste burning.

Larval Habitats Diversity and Distribution of the Mosquito (Diptera: Culicidae) Species in the Republic of Moldova.

PubMed

Sulesco, Tatiana M; Toderas, Lidia G; Uspenskaia, Inga G; Toderas, I K

2015-11-01

A countrywide field survey of immature mosquitoes was conducted in Moldova with the aim to evaluate the Culicidae species composition in different larval habitats and their distribution in the country. In total, 259 potential larval habitats were sampled in the 53 localities, resulting in 9,456 specimens. Twenty species belonging to the genera Anopheles, Aedes, Culex, Culiseta, and Uranotaenia were collected. Mean species richness in aquatic habitats ranged from 1.00 to 4.00, and, for example, was higher in swamps, flood plains, ditches, and large ground pools and lower in rivers, streams, tree-holes, and containers. Six mosquito species were identified only in a single type of aquatic habitat. Anopheles maculipennis s.l., Culex pipiens pipiens L., and Culex modestus Ficalbi were the most abundant and distributed species representing over 80% of the identified specimens. Three, four, and five associated species were recorded from 23.5% of mosquito-positive aquatic habitats. Our findings demonstrate the co-occurrence of Cx. p. pipiens and Culex torrentium Martini in natural and rural environments. It is concluded that the study area has undergone a dramatic ecological change since the previous studies in the 1950s, causing the near extinction of Culex theileri Theobald from Moldova. An. maculipennis s.l. larval abundance, reduced by the DDT control of the adults in the 1950s, had returned to those of the 1940s. Restoration of An. maculipennis s.l. abundance in combination with imported malaria cases constitute a risk of the reintroduction of malaria transmission in Moldova. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

A trait based perspective on the biogeography of common and abundant marine bacterioplankton clades.

PubMed

Brown, Mark V; Ostrowski, Martin; Grzymski, Joseph J; Lauro, Federico M

2014-06-01

Marine microbial communities provide much of the energy upon which all higher trophic levels depend, particularly in open-ocean and oligotrophic systems, and play a pivotal role in biogeochemical cycling. How and why species are distributed in the global oceans, and whether net ecosystem function can be accurately predicted from community composition are fundamental questions for marine scientists. Many of the most abundant clades of marine bacteria, including the Prochlorococcus, Synechococcus, SAR11, SAR86 and Roseobacter, have a very broad, if not a cosmopolitan distribution. However this is not reflected in an underlying genetic identity. Rather, widespread distribution in these organisms is achieved by the existence of closely related but discrete ecotypes that display niche adaptations. Closely related ecotypes display specific nutritional or energy generating mechanisms and are adapted to different physical parameters including temperature, salinity, and hydrostatic pressure. Furthermore, biotic phenomena such as selective grazing and viral loss contribute to the success or failure of ecotypes allowing some to compete effectively in particular marine provinces but not in others. An additional layer of complexity is added by ocean currents and hydrodynamic specificity of water body masses that bound microbial dispersal and immigration. These vary in space and time with respect to intensity and direction, making the definition of large biogeographic provinces problematic. A deterministic theory aimed at understanding how all these factors shape microbial life in the oceans can only proceed through analysis of microbial traits, rather than pure phylogenetic assessments. Trait based approaches seek mechanistic explanations for the observed temporal and spatial patterns. This review will present successful recent advances in phylogenetic and trait based biogeographic analyses in some of the most abundant marine taxa. Copyright © 2014. Published by Elsevier B.V.

Quantifying the Δ63-Δ47 offset: Determining mineral- and temperature-dependent acid fractionation factors through mass spectrometric analyses of stochastically-reordered carbonates

NASA Astrophysics Data System (ADS)

Mitsunaga, B.; Mosenfelder, J. L.; Tripati, A.

2017-12-01

"Clumped" isotope thermometry—the relationship between the formation temperature of a carbonate mineral and the relative abundance of 13C—18O bonds in its crystal lattice—is a novel geochemical proxy with a wide range of applications in paleoclimatology, geobiology, and paleoceanography. It is based on the thermodynamic propensity for rare, heavy isotopes to bond at greater rates at lower temperatures, while at high temperatures, a stochastic distribution of heavy isotopologues is achieved. Unfortunately, precision mass spectrometric determination of the abundance of isotopologues in solid materials has proven difficult; instead, the isotopic composition of carbonates has traditionally been measured through acid digestion and subsequent analysis of the product CO2 gas. For example, clumped isotope thermometry typically relates formation temperature to Δ47, the abundance of 47-amu isotopologues relative to the predicted stochastic distribution. As a consequence, the degree of fractionation that occurs between solid (Δ63) and gaseous (Δ47) phases has largely gone unstudied. By melting calcite and witherite powder at high pressures and temperatures ( 1650ºC), we have produced a suite of carbonates predicted to have stochastic distributions of CO32- isotopologues (i.e., Δ63 values of 0‰). Thus, the measured Δ47 values of CO2 produced from these samples through acid digestion should equal the degree of fractionation that occurs. We perform these measurements at a range of acid temperatures on several digestion apparatuses in order to deduce and quantify controls on acid digestion fractionation factors. We also calculate acid digestion fractionation factors using different sets of constants and compare our results to previously published estimates.

Spatial and temporal distribution of Tabanidae in the Pyrenees Mountains: the influence of altitude and landscape structure.

PubMed

Baldacchino, F; Porciani, A; Bernard, C; Jay-Robert, P

2014-02-01

In high-altitude summer pastures, horseflies (Diptera: Tabanidae) can be a serious nuisance to livestock, as well as mechanical vectors of animal diseases such as besnoitiosis, an enzootic disease in the Pyrenees. However, the activity of horseflies in mountainous environments is poorly documented. To study the seasonality and distribution of tabanids in the Pyrenees Mountains, a sampling design was set up in two valleys on opposite sides of the mountain, one north-facing and one south-facing, along high-elevation gradients and at different distances from a water body between May and October 2011. The influence of the landscape on species richness and abundance was assessed by taking into account forested and unforested areas in 200 m radii around the trapping sites. Our findings indicated that: (1) The slope, the altitude and the size of unforested patches significantly influenced community composition of tabanids. (2) Altitude had a positive or a negative effect, depending on the species. (3) Species richness and abundance were negatively correlated with large open habitats and positively correlated with patch-shape complexity. (4) Seasonal succession of the most abundant species was observed in both valleys, with a maximum of catches at the beginning of August; however, tabanid activity ended earlier in the southern valley, which was more exposed to sunlight. (5) Philipomyia aprica, Tabanus bromius, Tabanus glaucopis and Hybomitra auripila were active from 9:00 to 19:00 h (GMT+1), with a peak of activity at midday. This paper also discusses the implications of these findings in relation to changes in horsefly distribution and their control in mountainous environments.

Unraveling sterol-dependent membrane phenotypes by analysis of protein abundance-ratio distributions in different membrane fractions under biochemical and endogenous sterol depletion.

PubMed

Zauber, Henrik; Szymanski, Witold; Schulze, Waltraud X

2013-12-01

During the last decade, research on plasma membrane focused increasingly on the analysis of so-called microdomains. It has been shown that function of many membrane-associated proteins involved in signaling and transport depends on their conditional segregation within sterol-enriched membrane domains. High throughput proteomic analysis of sterol-protein interactions are often based on analyzing detergent resistant membrane fraction enriched in sterols and associated proteins, which also contain proteins from these microdomain structures. Most studies so far focused exclusively on the characterization of detergent resistant membrane protein composition and abundances. This approach has received some criticism because of its unspecificity and many co-purifying proteins. In this study, by a label-free quantitation approach, we extended the characterization of membrane microdomains by particularly studying distributions of each protein between detergent resistant membrane and detergent-soluble fractions (DSF). This approach allows a more stringent definition of dynamic processes between different membrane phases and provides a means of identification of co-purifying proteins. We developed a random sampling algorithm, called Unicorn, allowing for robust statistical testing of alterations in the protein distribution ratios of the two different fractions. Unicorn was validated on proteomic data from methyl-β-cyclodextrin treated plasma membranes and the sterol biosynthesis mutant smt1. Both, chemical treatment and sterol-biosynthesis mutation affected similar protein classes in their membrane phase distribution and particularly proteins with signaling and transport functions.

Unraveling Sterol-dependent Membrane Phenotypes by Analysis of Protein Abundance-ratio Distributions in Different Membrane Fractions Under Biochemical and Endogenous Sterol Depletion*

PubMed Central

Zauber, Henrik; Szymanski, Witold; Schulze, Waltraud X.

2013-01-01

During the last decade, research on plasma membrane focused increasingly on the analysis of so-called microdomains. It has been shown that function of many membrane-associated proteins involved in signaling and transport depends on their conditional segregation within sterol-enriched membrane domains. High throughput proteomic analysis of sterol-protein interactions are often based on analyzing detergent resistant membrane fraction enriched in sterols and associated proteins, which also contain proteins from these microdomain structures. Most studies so far focused exclusively on the characterization of detergent resistant membrane protein composition and abundances. This approach has received some criticism because of its unspecificity and many co-purifying proteins. In this study, by a label-free quantitation approach, we extended the characterization of membrane microdomains by particularly studying distributions of each protein between detergent resistant membrane and detergent-soluble fractions (DSF). This approach allows a more stringent definition of dynamic processes between different membrane phases and provides a means of identification of co-purifying proteins. We developed a random sampling algorithm, called Unicorn, allowing for robust statistical testing of alterations in the protein distribution ratios of the two different fractions. Unicorn was validated on proteomic data from methyl-β-cyclodextrin treated plasma membranes and the sterol biosynthesis mutant smt1. Both, chemical treatment and sterol-biosynthesis mutation affected similar protein classes in their membrane phase distribution and particularly proteins with signaling and transport functions. PMID:24030099

Lake Bacterial Assemblage Composition Is Sensitive to Biological Disturbance Caused by an Invasive Filter Feeder

PubMed Central

Carrick, Hunter J.; Cavaletto, Joann; Chiang, Edna; Johengen, Thomas H.; Vanderploeg, Henry A.

2017-01-01

ABSTRACT One approach to improve forecasts of how global change will affect ecosystem processes is to better understand how anthropogenic disturbances alter bacterial assemblages that drive biogeochemical cycles. Species invasions are important contributors to global change, but their impacts on bacterial community ecology are rarely investigated. Here, we studied direct impacts of invasive dreissenid mussels (IDMs), one of many invasive filter feeders, on freshwater lake bacterioplankton. We demonstrated that direct effects of IDMs reduced bacterial abundance and altered assemblage composition by preferentially removing larger and particle-associated bacteria. While this increased the relative abundances of many free-living bacterial taxa, some were susceptible to filter feeding, in line with efficient removal of phytoplankton cells of <2 μm. This selective removal of particle-associated and larger bacteria by IDMs altered inferred bacterial functional group representation, defined by carbon and energy source utilization. Specifically, we inferred an increased relative abundance of chemoorganoheterotrophs predicted to be capable of rhodopsin-dependent energy generation. In contrast to the few previous studies that have focused on the longer-term combined direct and indirect effects of IDMs on bacterioplankton, our study showed that IDMs act directly as a biological disturbance to which freshwater bacterial assemblages are sensitive. The negative impacts on particle-associated bacteria, which have been shown to be more active than free-living bacteria, and the inferred shifts in functional group representation raise the possibility that IDMs may directly alter bacterially mediated ecosystem functions. IMPORTANCE Freshwater bacteria play fundamental roles in global elemental cycling and are an intrinsic part of local food webs. Human activities are altering freshwater environments, and much has been learned regarding the sensitivity of bacterial assemblages to a variety of these disturbances. Yet, relatively few studies have focused on how species invasion, which is one of the most important aspects of anthropogenic global change, affects freshwater bacterial assemblages. This study focuses on the impact of invasive dreissenid mussels (IDMs), a globally distributed group of invasive species with large impacts on freshwater phyto- and zooplankton assemblages. We show that IDMs have direct effects on lake bacterioplankton abundance, taxonomic composition, and inferred bacterial functional group representation. PMID:28593195

Lake Bacterial Assemblage Composition Is Sensitive to Biological Disturbance Caused by an Invasive Filter Feeder.

PubMed

Denef, Vincent J; Carrick, Hunter J; Cavaletto, Joann; Chiang, Edna; Johengen, Thomas H; Vanderploeg, Henry A

2017-01-01

One approach to improve forecasts of how global change will affect ecosystem processes is to better understand how anthropogenic disturbances alter bacterial assemblages that drive biogeochemical cycles. Species invasions are important contributors to global change, but their impacts on bacterial community ecology are rarely investigated. Here, we studied direct impacts of invasive dreissenid mussels (IDMs), one of many invasive filter feeders, on freshwater lake bacterioplankton. We demonstrated that direct effects of IDMs reduced bacterial abundance and altered assemblage composition by preferentially removing larger and particle-associated bacteria. While this increased the relative abundances of many free-living bacterial taxa, some were susceptible to filter feeding, in line with efficient removal of phytoplankton cells of <2 μm. This selective removal of particle-associated and larger bacteria by IDMs altered inferred bacterial functional group representation, defined by carbon and energy source utilization. Specifically, we inferred an increased relative abundance of chemoorganoheterotrophs predicted to be capable of rhodopsin-dependent energy generation. In contrast to the few previous studies that have focused on the longer-term combined direct and indirect effects of IDMs on bacterioplankton, our study showed that IDMs act directly as a biological disturbance to which freshwater bacterial assemblages are sensitive. The negative impacts on particle-associated bacteria, which have been shown to be more active than free-living bacteria, and the inferred shifts in functional group representation raise the possibility that IDMs may directly alter bacterially mediated ecosystem functions. IMPORTANCE Freshwater bacteria play fundamental roles in global elemental cycling and are an intrinsic part of local food webs. Human activities are altering freshwater environments, and much has been learned regarding the sensitivity of bacterial assemblages to a variety of these disturbances. Yet, relatively few studies have focused on how species invasion, which is one of the most important aspects of anthropogenic global change, affects freshwater bacterial assemblages. This study focuses on the impact of invasive dreissenid mussels (IDMs), a globally distributed group of invasive species with large impacts on freshwater phyto- and zooplankton assemblages. We show that IDMs have direct effects on lake bacterioplankton abundance, taxonomic composition, and inferred bacterial functional group representation.

Lake Bacterial Assemblage Composition Is Sensitive to Biological Disturbance Caused by an Invasive Filter Feeder

DOE Office of Scientific and Technical Information (OSTI.GOV)

Denef, Vincent J.; Carrick, Hunter J.; Cavaletto, Joann

One approach to improve forecasts of how global change will affect ecosystem processes is to better understand how anthropogenic disturbances alter bacterial assemblages that drive biogeochemical cycles. Species invasions are important contributors to global change, but their impacts on bacterial community ecology are rarely investigated. Here, we studied direct impacts of invasive dreissenid mussels (IDMs), one of many invasive filter feeders, on freshwater lake bacterioplankton. We demonstrated that direct effects of IDMs reduced bacterial abundance and altered assemblage composition by preferentially removing larger and particle-associated bacteria. While this increased the relative abundances of many free-living bacterial taxa, some were susceptiblemore » to filter feeding, in line with efficient removal of phytoplankton cells of <2 μm. This selective removal of particle-associated and larger bacteria by IDMs altered inferred bacterial functional group representation, defined by carbon and energy source utilization. Specifically, we inferred an increased relative abundance of chemoorganoheterotrophs predicted to be capable of rhodopsin-dependent energy generation. In contrast to the few previous studies that have focused on the longer-term combined direct and indirect effects of IDMs on bacterioplankton, our study showed that IDMs act directly as a biological disturbance to which freshwater bacterial assemblages are sensitive. The negative impacts on particle-associated bacteria, which have been shown to be more active than free-living bacteria, and the inferred shifts in functional group representation raise the possibility that IDMs may directly alter bacterially mediated ecosystem functions.Freshwater bacteria play fundamental roles in global elemental cycling and are an intrinsic part of local food webs. Human activities are altering freshwater environments, and much has been learned regarding the sensitivity of bacterial assemblages to a variety of these disturbances. Yet, relatively few studies have focused on how species invasion, which is one of the most important aspects of anthropogenic global change, affects freshwater bacterial assemblages. This study focuses on the impact of invasive dreissenid mussels (IDMs), a globally distributed group of invasive species with large impacts on freshwater phyto- and zooplankton assemblages. Here, we show that IDMs have direct effects on lake bacterioplankton abundance, taxonomic composition, and inferred bacterial functional group representation.« less

Lake Bacterial Assemblage Composition Is Sensitive to Biological Disturbance Caused by an Invasive Filter Feeder

DOE PAGES

Denef, Vincent J.; Carrick, Hunter J.; Cavaletto, Joann; ...

2017-05-31

One approach to improve forecasts of how global change will affect ecosystem processes is to better understand how anthropogenic disturbances alter bacterial assemblages that drive biogeochemical cycles. Species invasions are important contributors to global change, but their impacts on bacterial community ecology are rarely investigated. Here, we studied direct impacts of invasive dreissenid mussels (IDMs), one of many invasive filter feeders, on freshwater lake bacterioplankton. We demonstrated that direct effects of IDMs reduced bacterial abundance and altered assemblage composition by preferentially removing larger and particle-associated bacteria. While this increased the relative abundances of many free-living bacterial taxa, some were susceptiblemore » to filter feeding, in line with efficient removal of phytoplankton cells of <2 μm. This selective removal of particle-associated and larger bacteria by IDMs altered inferred bacterial functional group representation, defined by carbon and energy source utilization. Specifically, we inferred an increased relative abundance of chemoorganoheterotrophs predicted to be capable of rhodopsin-dependent energy generation. In contrast to the few previous studies that have focused on the longer-term combined direct and indirect effects of IDMs on bacterioplankton, our study showed that IDMs act directly as a biological disturbance to which freshwater bacterial assemblages are sensitive. The negative impacts on particle-associated bacteria, which have been shown to be more active than free-living bacteria, and the inferred shifts in functional group representation raise the possibility that IDMs may directly alter bacterially mediated ecosystem functions.Freshwater bacteria play fundamental roles in global elemental cycling and are an intrinsic part of local food webs. Human activities are altering freshwater environments, and much has been learned regarding the sensitivity of bacterial assemblages to a variety of these disturbances. Yet, relatively few studies have focused on how species invasion, which is one of the most important aspects of anthropogenic global change, affects freshwater bacterial assemblages. This study focuses on the impact of invasive dreissenid mussels (IDMs), a globally distributed group of invasive species with large impacts on freshwater phyto- and zooplankton assemblages. Here, we show that IDMs have direct effects on lake bacterioplankton abundance, taxonomic composition, and inferred bacterial functional group representation.« less