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Sample records for abundance spatial distribution

  1. Floral abundance, richness, and spatial distribution drive urban garden bee communities.

    PubMed

    Plascencia, M; Philpott, S M

    2017-03-01

    In urban landscapes, gardens provide refuges for bee diversity, but conservation potential may depend on local and landscape features. Foraging and population persistence of bee species, as well as overall pollinator community structure, may be supported by the abundance, richness, and spatial distribution of floral resources. Floral resources strongly differ in urban gardens. Using hand netting and pan traps to survey bees, we examined whether abundance, richness, and spatial distribution of floral resources, as well as ground cover and garden landscape surroundings influence bee abundance, species richness, and diversity on the central coast of California. Differences in floral abundance and spatial distribution, as well as urban cover in the landscape, predicted different bee community variables. Abundance of all bees and of honeybees (Apis mellifera) was lower in sites with more urban land cover surrounding the gardens. Honeybee abundance was higher in sites with patchy floral resources, whereas bee species richness and bee diversity was higher in sites with more clustered floral resources. Surprisingly, bee species richness and bee diversity was lower in sites with very high floral abundance, possibly due to interactions with honeybees. Other studies have documented the importance of floral abundance and landscape surroundings for bees in urban gardens, but this study is the first to document that the spatial arrangement of flowers strongly predicts bee abundance and richness. Based on these findings, it is likely that garden managers may promote bee conservation by managing for floral connectivity and abundance within these ubiquitous urban habitats.

  2. Optimal sampling design for estimating spatial distribution and abundance of a freshwater mussel population

    USGS Publications Warehouse

    Pooler, P.S.; Smith, D.R.

    2005-01-01

    We compared the ability of simple random sampling (SRS) and a variety of systematic sampling (SYS) designs to estimate abundance, quantify spatial clustering, and predict spatial distribution of freshwater mussels. Sampling simulations were conducted using data obtained from a census of freshwater mussels in a 40 X 33 m section of the Cacapon River near Capon Bridge, West Virginia, and from a simulated spatially random population generated to have the same abundance as the real population. Sampling units that were 0.25 m 2 gave more accurate and precise abundance estimates and generally better spatial predictions than 1-m2 sampling units. Systematic sampling with ???2 random starts was more efficient than SRS. Estimates of abundance based on SYS were more accurate when the distance between sampling units across the stream was less than or equal to the distance between sampling units along the stream. Three measures for quantifying spatial clustering were examined: Hopkins Statistic, the Clumping Index, and Morisita's Index. Morisita's Index was the most reliable, and the Hopkins Statistic was prone to false rejection of complete spatial randomness. SYS designs with units spaced equally across and up stream provided the most accurate predictions when estimating the spatial distribution by kriging. Our research indicates that SYS designs with sampling units equally spaced both across and along the stream would be appropriate for sampling freshwater mussels even if no information about the true underlying spatial distribution of the population were available to guide the design choice. ?? 2005 by The North American Benthological Society.

  3. Investigating the spatial distribution and effects of nearshore topography on Acropora cervicornis abundance in Southeast Florida.

    PubMed

    D'Antonio, Nicole L; Gilliam, David S; Walker, Brian K

    2016-01-01

    Dense Acropora cervicornis aggregations, or patches, have been documented within nearshore habitats in Southeast Florida (SE FL) despite close proximity to numerous anthropogenic stressors and subjection to frequent natural disturbance events. Limited information has been published concerning the distribution and abundance of A. cervicornis outside of these known dense patches. The first goal of this study was to conduct a spatially extensive and inclusive survey (9.78 km(2)) to determine whether A. cervicornis distribution in the nearshore habitat of SE FL was spatially uniform or clustered. The second goal was to investigate potential relationships between broad-scale seafloor topography and A. cervicornis abundance using high resolution bathymetric data. Acropora cervicornis was distributed throughout the study area, and the Getis-Ord Gi* statistic and Anselin Local Moran's I spatial cluster analysis showed significant clustering along topographic features termed ridge crests. Significant clustering was further supported by the inverse distance weighted surface model. Ordinal logistic regression indicated 1) as distance from a ridge increases, odds of reduced A. cervicornis abundance increases; 2) as topographic elevation increases, odds of increased abundance increases; and 3) as mean depth increases, odds of increased abundance increases. This study provides detailed information on A. cervicornis distribution and abundance at a regional scale and supports modeling its distributions in similar habitats elsewhere throughout the western Atlantic and Caribbean. Acropora cervicornis is frequently observed and in areas an abundant species within the nearshore habitat along the SE FL portion of the Florida Reef Tract (FRT). This study provides a better understanding of local habitat associations thus facilitating appropriate management of the nearshore environment and species conservation. The portion of the FRT between Hillsboro and Port Everglades inlets should be

  4. Investigating the spatial distribution and effects of nearshore topography on Acropora cervicornis abundance in Southeast Florida

    PubMed Central

    Gilliam, David S.; Walker, Brian K.

    2016-01-01

    Dense Acropora cervicornis aggregations, or patches, have been documented within nearshore habitats in Southeast Florida (SE FL) despite close proximity to numerous anthropogenic stressors and subjection to frequent natural disturbance events. Limited information has been published concerning the distribution and abundance of A. cervicornis outside of these known dense patches. The first goal of this study was to conduct a spatially extensive and inclusive survey (9.78 km2) to determine whether A. cervicornis distribution in the nearshore habitat of SE FL was spatially uniform or clustered. The second goal was to investigate potential relationships between broad-scale seafloor topography and A. cervicornis abundance using high resolution bathymetric data. Acropora cervicornis was distributed throughout the study area, and the Getis-Ord Gi* statistic and Anselin Local Moran’s I spatial cluster analysis showed significant clustering along topographic features termed ridge crests. Significant clustering was further supported by the inverse distance weighted surface model. Ordinal logistic regression indicated 1) as distance from a ridge increases, odds of reduced A. cervicornis abundance increases; 2) as topographic elevation increases, odds of increased abundance increases; and 3) as mean depth increases, odds of increased abundance increases. This study provides detailed information on A. cervicornis distribution and abundance at a regional scale and supports modeling its distributions in similar habitats elsewhere throughout the western Atlantic and Caribbean. Acropora cervicornis is frequently observed and in areas an abundant species within the nearshore habitat along the SE FL portion of the Florida Reef Tract (FRT). This study provides a better understanding of local habitat associations thus facilitating appropriate management of the nearshore environment and species conservation. The portion of the FRT between Hillsboro and Port Everglades inlets should be

  5. Hierarchical spatial models for predicting pygmy rabbit distribution and relative abundance

    USGS Publications Warehouse

    Wilson, T.L.; Odei, J.B.; Hooten, M.B.; Edwards, T.C.

    2010-01-01

    Conservationists routinely use species distribution models to plan conservation, restoration and development actions, while ecologists use them to infer process from pattern. These models tend to work well for common or easily observable species, but are of limited utility for rare and cryptic species. This may be because honest accounting of known observation bias and spatial autocorrelation are rarely included, thereby limiting statistical inference of resulting distribution maps. We specified and implemented a spatially explicit Bayesian hierarchical model for a cryptic mammal species (pygmy rabbit Brachylagus idahoensis). Our approach used two levels of indirect sign that are naturally hierarchical (burrows and faecal pellets) to build a model that allows for inference on regression coefficients as well as spatially explicit model parameters. We also produced maps of rabbit distribution (occupied burrows) and relative abundance (number of burrows expected to be occupied by pygmy rabbits). The model demonstrated statistically rigorous spatial prediction by including spatial autocorrelation and measurement uncertainty. We demonstrated flexibility of our modelling framework by depicting probabilistic distribution predictions using different assumptions of pygmy rabbit habitat requirements. Spatial representations of the variance of posterior predictive distributions were obtained to evaluate heterogeneity in model fit across the spatial domain. Leave-one-out cross-validation was conducted to evaluate the overall model fit. Synthesis and applications. Our method draws on the strengths of previous work, thereby bridging and extending two active areas of ecological research: species distribution models and multi-state occupancy modelling. Our framework can be extended to encompass both larger extents and other species for which direct estimation of abundance is difficult. ?? 2010 The Authors. Journal compilation ?? 2010 British Ecological Society.

  6. Comparison of five modelling techniques to predict the spatial distribution and abundance of seabirds

    USGS Publications Warehouse

    O'Connell, Allan F.; Gardner, Beth; Oppel, Steffen; Meirinho, Ana; Ramírez, Iván; Miller, Peter I.; Louzao, Maite

    2012-01-01

    Knowledge about the spatial distribution of seabirds at sea is important for conservation. During marine conservation planning, logistical constraints preclude seabird surveys covering the complete area of interest and spatial distribution of seabirds is frequently inferred from predictive statistical models. Increasingly complex models are available to relate the distribution and abundance of pelagic seabirds to environmental variables, but a comparison of their usefulness for delineating protected areas for seabirds is lacking. Here we compare the performance of five modelling techniques (generalised linear models, generalised additive models, Random Forest, boosted regression trees, and maximum entropy) to predict the distribution of Balearic Shearwaters (Puffinus mauretanicus) along the coast of the western Iberian Peninsula. We used ship transect data from 2004 to 2009 and 13 environmental variables to predict occurrence and density, and evaluated predictive performance of all models using spatially segregated test data. Predicted distribution varied among the different models, although predictive performance varied little. An ensemble prediction that combined results from all five techniques was robust and confirmed the existence of marine important bird areas for Balearic Shearwaters in Portugal and Spain. Our predictions suggested additional areas that would be of high priority for conservation and could be proposed as protected areas. Abundance data were extremely difficult to predict, and none of five modelling techniques provided a reliable prediction of spatial patterns. We advocate the use of ensemble modelling that combines the output of several methods to predict the spatial distribution of seabirds, and use these predictions to target separate surveys assessing the abundance of seabirds in areas of regular use.

  7. Predicting probability of occurrence and factors affecting distribution and abundance of three Ozark endemic crayfish species at multiple spatial scales

    USGS Publications Warehouse

    Nolen, Matthew S.; Magoulick, Daniel D.; DiStefano, Robert J.; Imhoff, Emily M.; Wagner, Brian K.

    2014-01-01

    We found that a range of environmental variables were important in predicting crayfish distribution and abundance at multiple spatial scales and their importance was species-, response variable- and scale dependent. We would encourage others to examine the influence of spatial scale on species distribution and abundance patterns.

  8. Seasonal Abundance, Spatial Distribution, Spawning and Growth of Astropecten irregularis (Echinodermata: Asteroidea)

    NASA Astrophysics Data System (ADS)

    Freeman, S. M.; Richardson, C. A.; Seed, R.

    2001-07-01

    Seasonal trends in the abundance, spatial distribution, spawning and growth of a population of Astropecten irregularis inhabiting the coastal waters of North Wales are described. Population densities of A. irregularis varied seasonally with starfish attaining their maximum and minimum abundances in summer and winter respectively. Changes in their spatial distribution strongly suggests that A. irregularis migrates offshore into deeper waters during the winter months probably to avoid strong onshore wave surges. High population densities of starfish which occur during the summer months may be associated with spawning aggregations or the availability of suitable prey species; a smaller peak in starfish abundance occurred during autumn 1997 coinciding with the settlement of the bivalve Spisula subtruncata and the cumacean Diastylis rugosa , prey species which are readily consumed by A. irregularis. Astropecten irregularis spawned during late spring-early summer, but thereafter the gonad somatic index remained at a low level until late autumn; the index increased throughout winter and starfish attained peak reproductive condition by late spring. Small starfish (arm length <24 mm), showed little evidence of reproductive development. Limited recruitment of A. irregularis (<8 mm) occurred during October-November 1996, and the integration of this small cohort into the main population occurred within one year. Locomotory activity and burrowing depth of starfish maintained in laboratory aquaria correlated with changes in seawater temperature; activity was largely inhibited and burrowing depth significantly increased at temperatures <8 °C. Seawater temperature is probably an important factor regulating the abundance and distribution of A. irregularis in coastal waters.

  9. Lutzomyia longipalpis Presence and Abundance Distribution at Different Micro-spatial Scales in an Urban Scenario.

    PubMed

    Santini, María Soledad; Utgés, María Eugenia; Berrozpe, Pablo; Manteca Acosta, Mariana; Casas, Natalia; Heuer, Paola; Salomón, O Daniel

    2015-01-01

    The principal objective of this study was to assess a modeling approach to Lu. longipalpis distribution in an urban scenario, discriminating micro-scale landscape variables at microhabitat and macrohabitat scales and the presence from the abundance of the vector. For this objective, we studied vectors and domestic reservoirs and evaluated different environmental variables simultaneously, so we constructed a set of 13 models to account for micro-habitats, macro-habitats and mixed-habitats. We captured a total of 853 sandflies, of which 98.35% were Lu. longipalpis. We sampled a total of 197 dogs; 177 of which were associated with households where insects were sampled. Positive rK39 dogs represented 16.75% of the total, of which 47% were asymptomatic. Distance to the border of the city and high to medium density vegetation cover ended to be the explanatory variables, all positive, for the presence of sandflies in the city. All variables in the abundance model ended to be explanatory, trees around the trap, distance to the stream and its quadratic, being the last one the only one with negative coefficient indicating that the maximum abundance was associated with medium values of distance to the stream. The spatial distribution of dogs infected with L. infantum showed a heterogeneous pattern throughout the city; however, we could not confirm an association of the distribution with the variables assessed. In relation to Lu. longipalpis distribution, the strategy to discriminate the micro-spatial scales at which the environmental variables were recorded allowed us to associate presence with macrohabitat variables and abundance with microhabitat and macrohabitat variables. Based on the variables associated with Lu. longipalpis, the model will be validated in other cities and environmental surveillance, and control interventions will be proposed and evaluated in the microscale level and integrated with socio-cultural approaches and programmatic and village (mesoscale

  10. Lutzomyia longipalpis Presence and Abundance Distribution at Different Micro-spatial Scales in an Urban Scenario

    PubMed Central

    Santini, María Soledad; Utgés, María Eugenia; Berrozpe, Pablo; Manteca Acosta, Mariana; Casas, Natalia; Heuer, Paola; Salomón, O. Daniel

    2015-01-01

    The principal objective of this study was to assess a modeling approach to Lu. longipalpis distribution in an urban scenario, discriminating micro-scale landscape variables at microhabitat and macrohabitat scales and the presence from the abundance of the vector. For this objective, we studied vectors and domestic reservoirs and evaluated different environmental variables simultaneously, so we constructed a set of 13 models to account for micro-habitats, macro-habitats and mixed-habitats. We captured a total of 853 sandflies, of which 98.35% were Lu. longipalpis. We sampled a total of 197 dogs; 177 of which were associated with households where insects were sampled. Positive rK39 dogs represented 16.75% of the total, of which 47% were asymptomatic. Distance to the border of the city and high to medium density vegetation cover ended to be the explanatory variables, all positive, for the presence of sandflies in the city. All variables in the abundance model ended to be explanatory, trees around the trap, distance to the stream and its quadratic, being the last one the only one with negative coefficient indicating that the maximum abundance was associated with medium values of distance to the stream. The spatial distribution of dogs infected with L. infantum showed a heterogeneous pattern throughout the city; however, we could not confirm an association of the distribution with the variables assessed. In relation to Lu. longipalpis distribution, the strategy to discriminate the micro-spatial scales at which the environmental variables were recorded allowed us to associate presence with macrohabitat variables and abundance with microhabitat and macrohabitat variables. Based on the variables associated with Lu. longipalpis, the model will be validated in other cities and environmental surveillance, and control interventions will be proposed and evaluated in the microscale level and integrated with socio-cultural approaches and programmatic and village (mesoscale

  11. Spatial Distribution of CO Isotopologue Abundance Ratios in the Center of NGC 1068

    NASA Astrophysics Data System (ADS)

    Taniguchi, A.; Kohno, K.; Tamura, Y.; Izumi, T.; Takano, S.; Nakajima, T.; Tosaki, T.

    2015-12-01

    We present an initial result of the spatial distribution of [12CO]/[13CO] and [C16O]/[C18O] abundance ratios in the central ˜1 kpc region of the nearby Seyfert 2 galaxy NGC 1068 observed with ALMA Cycle 0. With non-LTE analyses, both ratios are found to be different between the central circumnuclear disk (CND) and surrounding starburst ring (the Ring). The very high (˜300-1000) value may reflects the difference of chemical evolution and environment at the Ring.

  12. Spatial and temporal variation in the abundance, distribution and population structure of epibenthic megafauna in Port Foster, Deception Island

    NASA Astrophysics Data System (ADS)

    Cranmer, T. L.; Ruhl, H. A.; Baldwin, R. J.; Kaufmann, R. S.

    2003-06-01

    Abundance and spatial distribution of epibenthic megafauna were examined at Port Foster, Deception Island, five times between March 1999 and November 2000. Camera sled surveys and bottom trawls were used to identify and collect specimens, and camera sled photographs also were used to determine abundances and spatial distributions for each species. The ophiuroid Ophionotus victoriae, the regular echinoid Sterechinus neumayeri, and one or more species of Porifera were the most abundant taxa during this sampling period. Abundances of O. victoriae varied throughout the annual cycle, peaking in June 2000, and were correlated positively with sedimentation rates. In contrast, abundances of S. neumayeri were consistent throughout the sampling period, except for a peak in June 2000, during austral winter. Peak abundances for both species coincided with a large number of small individuals, indicating apparent recruitment events for O. victoriae and S. neumayeri during this time period. Poriferans, as a group, had statistically similar abundances during each sampling period. Low-abundance species tended to be aggregated on both small and large spatial scales, their distributions probably influenced by reproductive method, gregarious settlement, and food availability. The spatial distribution of S. neumayeri in June 2000 and O. victoriae was random across multiple spatial scales, perhaps in response to food availability and broad environmental tolerances, respectively.

  13. Spatial distribution patterns of ammonia-oxidizing archaea abundance in subtropical forests at early and late successional stages

    PubMed Central

    Chen, Jie; Zhang, Hui; Liu, Wei; Lian, Juyu; Ye, Wanhui; Shen, Weijun

    2015-01-01

    Characterizing the spatial distribution patterns of soil microorganisms is helpful in understanding the biogeochemical processes they perform, but has been less studied relative to those of macroorganisms. In this study, we investigated and compared the spatially explicit distribution patterns of ammonia-oxidizing archaea (AOA) abundance and the influential factors between an early (ES) and a late successional (LS) subtropical forest stand. The average AOA abundance, vegetational attributes, and soil nutrient contents were mostly greater in the LS than the ES stand (P = 0.085 or smaller), but their spatial variations were more pronounced in the ES than the LS stand. The spatial distribution patches of AOA abundance were smaller and more irregular in the ES stand (patch size <50 m) than in the LS stand (patch size about 120 m). Edaphic and vegetational variables contributed more to the spatial variations of AOA abundance for the ES (9.3%) stand than for LS stand, whereas spatial variables (MEMs) were the main contributors (62%) for the LS stand. These results suggest that environmental filtering likely influence the spatial distribution of AOA abundance at early successional stage more than that at late successional stage, while spatial dispersal is dominant at late successional stage. PMID:26565069

  14. How within field abundance and spatial distribution patterns of earthworms and macropores depend on soil tillage

    NASA Astrophysics Data System (ADS)

    van Schaik, Loes; Palm, Juliane; Schröder, Boris

    2014-05-01

    Earthworms play a key role in soil systems. They are ecosystem engineers affecting soil structure as well as the transport and availability of water and solutes through their burrowing behaviour. There are three different ecological earthworm types with different burrowing behaviour that can result in varying local infiltration patterns: from rapid deep vertical infiltration to a stronger diffuse distribution of water and solutes in the upper soil layers. The small scale variation in earthworm abundance is often very high and within fields earthworm population processes might result in an aggregated pattern. The question arises how the local distribution of earthworms affects spatial distributions of macroporosity and how both are influenced by soil tillage. Therefore we performed a total number of 430 earthworm samplings on four differently tilled agricultural fields in the Weiherbach catchment (South East Germany). Additionally, at a limited amount of 32 locations on two of the fields we performed sprinkling experiments with brilliant blue and excavated the soil to count macropores at different soil depths (10 cm, 30 cm and 50 cm) to compare macropore distributions to the earthworm distributions.

  15. The Abundance and Spatial Distribution of Soft Sediment Communities in Tanjung Bungah, Malaysia: A Preliminary Study

    PubMed Central

    Darif, Nur Aqilah Muhamad; Samad, Nur Shakila Abdul; Salleh, Sazlina; Mohammad, Mahadi; Nordin, Noor Alia Ahmad; Javeed, Aysha Mariam Mohamed; Jonik, Michelle Glory G; Zainudin, Muhamad Hilal Mohd

    2016-01-01

    Benthic faunal communities are important components in the intertidal zones. The diversity and abundance of the benthic communities are subjected to different natural and anthropogenic disturbances. The study was conducted as one off sampling on 6th November 2013 (1) to investigate the abundance and distribution of soft sediment communities in relation to environmental variables and (2) investigate the changes of population structure and diversity using spatial scales of 1 m, 10 m, and 100 m. Results indicated a total of 110 individuals of macrobenthos consisting of 7 different groups (Annelida, Bivalvia, Crustacea, Gastropoda, Nematoda, Nemertea, Polychaeta) and 4 different groups of meiobenthos (Copepoda, Nematoda, Ostracoda, Polychaeta) consisting 920 individuals were recorded. Dissolved oxygen played the most significant role in affecting the distribution of soft sediment communities while ammonia concentrations only affected marcobenthic organisms. However, sediment grain size did not show significant correlation (p>0.05) on soft sediment communities. Hence, understanding how different properties of benthos respond to changes in environmental variables is crucial in determining how the impacts on the sediment are tolerated by the benthic organisms. PMID:27965743

  16. Hydroacoustic estimates of abundance and spatial distribution of pelagic prey fishes in western Lake Superior

    USGS Publications Warehouse

    Mason, Doran M.; Johnson, Timothy B.; Harvey, Chris J.; Kitchell, James F.; Schram, Stephen T.; Bronte, Charles R.; Hoff, MIchael H.; Lozano, Stephen J.; Trebitz, Anett S.; Schreiner, Donald R.; Lamon, E. Conrad; Hrabik, Thomas R.

    2005-01-01

    Lake herring (Coregonus artedi) and rainbow smelt (Osmerus mordax) are a valuable prey resource for the recovering lake trout (Salvelinus namaycush) in Lake Superior. However, prey biomass may be insufficient to support the current predator demand. In August 1997, we assessed the abundance and spatial distribution of pelagic coregonines and rainbow smelt in western Lake Superior by combining a 120 kHz split beam acoustics system with midwater trawls. Coregonines comprised the majority of the midwater trawl catches and the length distributions for trawl caught fish coincided with estimated sizes of acoustic targets. Overall mean pelagic prey fish biomass was 15.56 kg ha−1 with the greatest fish biomass occurring in the Apostle Islands region (27.98 kg ha−1), followed by the Duluth Minnesota region (20.22 kg ha−1), and with the lowest biomass occurring in the open waters of western Lake Superior (9.46 kg ha−1). Biomass estimates from hydroacoustics were typically 2–134 times greater than estimates derived from spring bottom trawl surveys. Prey fish biomass for Lake Superior is about order of magnitude less than acoustic estimates for Lakes Michigan and Ontario. Discrepancies observed between bioenergetics-based estimates of predator consumption of coregonines and earlier coregonine biomass estimates may be accounted for by our hydroacoustic estimates.

  17. Spatial Distribution and Variations of Dust Abundances in the Large Magellanic Cloud

    NASA Astrophysics Data System (ADS)

    Paradis, Déborah; Reach, W. T.; Bernard, J.; Block, M.; Engelbracht, C. W.; Gordon, K.; Hora, J. L.; Indebetouw, R.; Kawamura, A.; Meade, M.; Meixner, M.; Sewilo, M.; Vijh, U. P.; Volk, K.

    2009-05-01

    The Large Magellanic Cloud (LMC) is the nearest galaxy external to the Milky Way, located at a distance of about 55 kpc. As opposed to the situation in the Galaxy, where studies of the infrared emission from dust in the interstellar medium (ISM) suffer from significant confusion along the line of sight, the favorable viewing angle for the LMC offers a direct view to the processes taking place in the diffuse ISM. The LMC has a lower metallicity than that of our Galaxy, estimated to 1/2-1/3 of the solar metallicity. Using the data obtained with the Spitzer Space telescope as part of the Surveying the Agents of a Galaxy's Evolution (SAGE) Legacy survey, we have studied the variations of the dust composition and abundance across the LMC. We traced maps of the relative abundance of Polycyclic Aromatic Hydrocarbons (PAH) and Very Small Grains (VSG), compared to Big Grains (BG). PAH are more abundant in the old stellar bar and close to molecular clouds, whereas the main source of VSG is located around 30-Doradus (brightest region of the LMC) and at the center of the bar. Morever the VSG relative abundance follows the distribution of the HII regions quite well, contrary to the PAH distribution. PAH and VSG could have a different origin or might have been subjected to different processing in the ISM. VSG abundance could trace the active star formation sites and PAH abundance could represent quiescent environments. We think that VSG could result from BG destruction in grain-grain collisions, due to turbulent motions. PAH could come from VSG shattering in some regions and could also be injected into the ISM during the AGB mass loss.

  18. The plankton community in Norwegian coastal waters—abundance, composition, spatial distribution and diel variation

    NASA Astrophysics Data System (ADS)

    Bratbak, Gunnar; Jacquet, Stéphan; Larsen, Aud; Pettersson, Lasse H.; Sazhin, Andrey F.; Thyrhaug, Runar

    2011-09-01

    The purpose of the present study was to explore the composition and variation of the pico-, nano- and micro-plankton communities in Norwegian coastal waters and Skagerrak, and the co-occurrence of bacteria and viruses. Samples were collected along three cruise transects from Jæren, Lista and Oksøy on the south coast of Norway and into the North Sea and Skagerrak. We also followed a drifting buoy for 55 h in Skagerrak in order to observe diel variations. Satellite ocean color images (SeaWiFS) of the chlorophyll a (chl a) distribution compared favorably to in situ measurements in open waters, while closer to the shore remote sensing chl a data was overestimated compared to the in situ data. Using light microscopy, we identified 49 micro- and 15 nanoplankton sized phototrophic forms as well as 40 micro- and 12 nanoplankton sized heterotrophic forms. The only picoeukaryote (0.2-2.0 μm) we identified was Resultor micron (Pedinophyceae ). Along the transects a significant variation in the distribution and abundance of different plankton forms were observed, with Synechococcus spp and autotrophic picoeukaryotes as the most notable examples. There was no correlation between viruses and chl a, but between viruses and bacteria, and between viruses and some of the phytoplankton groups, especially the picoeukaryotes. Moreover, there was a negative correlation between nutrients and small viruses (Low Fluorescent Viruses) but a positive correlation between nutrients and large viruses (High Fluorescent Viruses). The abundance of autotrophic picoplankton, bacteria and viruses showed a diel variation in surface waters with higher values around noon and late at night and lower values in the evening. Synechococcus spp were found at 20 m depth 25-45 nautical miles from shore apparently forming a bloom that stretched out for more than 100 nautical miles from Skagerrak and up the south west coast of Norway. The different methods used for assessing abundance, distribution and

  19. Distribution and Abundance of Phlebotominae, Vectors of Leishmaniasis, in Argentina: Spatial and Temporal Analysis at Different Scales

    PubMed Central

    Quintana, María Gabriela; Fernández, María Soledad; Salomón, Oscar Daniel

    2012-01-01

    The spatial-temporal analysis of the abundance of insects, vectors of tegumentary leishmaniasis (TL) and visceral leishmaniasis (VL), was performed in Argentina using spatial-temporal increasing scales. In the microscale (microfocal), the effect of the primary vegetation-crop interface in vector abundance was observed, and also how the shelters, food sources, and other environmental characteristics contribute to habitat microheterogeneity and so to a microheterogeneous vector distribution. In the mesoscale (locality or epidemic focus), the results from different foci of TL (rural and periurban) and VL (urban) suggested a metapopulation structure determined partially by quantifiable habitat variables that could explain the increase of risk associated to an increase of vector-human contact due to climatic or anthropogenic changes. In the macroscale (regional), captures of vectors and records of human cases allowed the construction of risk maps and predictive models of vector distribution. In conclusion, in order to obtain valid results transferrable to control programs from spatial studies, special attention should be paid in order to assure the consistency between the spatial scales of the hypotheses, data, and analytical tools of each experimental or descriptive design. PMID:22315620

  20. Temporal distribution and spatial pattern of abundance of the Rift Valley fever and West Nile fever vectors in Barkedji, Senegal.

    PubMed

    Diallo, Diawo; Talla, Cheikh; Ba, Yamar; Dia, Ibrahima; Sall, Amadou Alpha; Diallo, Mawlouth

    2011-12-01

    The temporal distribution and spatial pattern of abundance of mosquito vectors of Rift Valley fever (RVf) and West Nile fever (WNf) were studied during the 2005 and 2006 rainy seasons at Barkedji, Senegal. Mosquitoes were collected every two weeks with CDC light traps with dry ice at 79 sites including temporary ponds, barren, shrubby savannah, wooded savannah, steppes, and villages at different distances (between 0 and 600 m) from the nearest pond. The temporal distributions of these vectors varied between 2005 and 2006 and were positively correlated with rainfall for Aedes (Aedimorphus) vexans Patton, with rainfall after a lag time of one month for Culex (Culex) poicilipes (Theobald) and Culex (Culex) neavei Theobald. All the vectors had their highest abundances and parity rates between September and November. The highest vector abundances were observed in the barren and temporary ponds. The distance of trap location to the nearest ponds was negatively correlated to the abundance of the vectors. Taking into account the linear regression equations, it was predicted that mosquitoes would not disperse and be collected by the light trap, up to 1,500 m to the nearest ponds. The implications of these findings in the epidemiology and control of RVF and WNF at Barkedji are discussed.

  1. Predicting the spatial distribution of Ochlerotatus albifasciatus (Diptera: Culicidae) abundance with NOAA imagery.

    PubMed

    Gleiser, R M; Gorla, D E

    2007-12-01

    Ochlerotatus albifasciatus is a vector of western equine encephalomyelitis in Argentina and a nuisance mosquito affecting beef and dairy production. The objective of this study was to analyze whether environmental proxy data derived from 1 km resolution NOAA-AVHRR images could be useful as a rapid tool for locating areas with higher potential for Oc. albifasciatus activity at a regional scale. Training sites for mosquito abundance categories were 3.3x3.3 km polygons over sampling sites. Abundance was classified into two categories according to a proposed threshold for economic losses. Data of channels 1, 2, 4 and 5 were used to calculate five biophysical variables: normalized differences vegetation index (NDVI), land surface temperature, total precipitable water, dew point and vapour saturation deficit. A discriminant analysis correctly classified 100% of the areas predicted to be above or below the economic threshold of 2500 mosquitoes per night of capture, respectively. Components of the NDVI, the total precipitable water and the dew point temperature contributed most to the function value. The results suggest that environmental data derived from AVHRR-NOAA could be useful for rapidly identifying adequate areas for mosquito development or activity.

  2. Starfish (Asteroidea, Echinodermata) from the Faroe Islands; spatial distribution and abundance

    NASA Astrophysics Data System (ADS)

    Ringvold, H.; Andersen, T.

    2016-01-01

    "Marine benthic fauna of the Faroe Islands" (BIOFAR) is a large programme with a focus on collecting invertebrate fauna from the Faroes (62°N and 7°W). Cruises were undertaken from 1987 to 1990, and starfish (Asteroidea, Echinodermata) collected during this time were analysed. Asteroidea were sampled at ~50% of all BIOFAR stations. A Detritus sledge and a Triangular dredge proved to be the most efficient equipment, collecting over 60% of the specimens. In total 2473 specimens were collected from 20 to 1500 m depth, including 41 species from 17 families and 31 genera. Henricia pertusa (O. F. Müller, 1776) group, Pontaster tenuispinus (Düben & Koren, 1846), and Leptychaster arcticus (M. Sars, 1851) showed highest relative abundance. Maximum species diversity was found at 500-700 m depth, which coincides with the transition zone of water masses (North Icelandic Winter Water and Arctic Intermediate Water (NI/AI)) at approximately 400-600 m depth. 63% of the species were recorded at an average-weighted depth above 600 m. Two different ordination methods (detrended correspondence analysis (DCA) and nonmetric multidimensional scaling (NMDS)) gave highly consistent representations of the community structure gradients. The first ordination axis scores did not show significant relationships with any environmental variable. Biological covariates like the presence of Lophelia corals were not significantly related to ordination scores on any axis. The second ordination axis scores were significantly correlated with depth. Temperature and salinity were highly correlated (r=0.90), and both negatively correlated with depth (r=-0.69 and r=-0.57, respectively).

  3. Spatial Patterns in the Distribution, Diversity and Abundance of Benthic Foraminifera around Moorea (Society Archipelago, French Polynesia)

    PubMed Central

    2015-01-01

    Coral reefs are now subject to global threats and influences from numerous anthropogenic sources. Foraminifera, a group of unicellular shelled organisms, are excellent indicators of water quality and reef health. Thus we studied a set of samples taken in 1992 to provide a foraminiferal baseline for future studies of environmental change. Our study provides the first island-wide analysis of shallow benthic foraminifera from around Moorea (Society Archipelago). We analyzed the composition, species richness, patterns of distribution and abundance of unstained foraminiferal assemblages from bays, fringing reefs, nearshore and back- and fore-reef environments. A total of 380 taxa of foraminifera were recorded, a number that almost doubles previous species counts. Spatial patterns of foraminiferal assemblages are characterized by numerical abundances of individual taxa, cluster groups and gradients of species richness, as documented by cluster, Fisher α, ternary plot and Principal Component Analyses (PCA). The inner bay inlets are dominated by stress-tolerant, mostly thin-shelled taxa of Bolivina, Bolivinella, Nonionoides, Elongobula, and Ammonia preferring low-oxygen and/or nutrient-rich habitats influenced by coastal factors such as fresh-water runoff and overhanging mangroves. The larger symbiont-bearing foraminifera (Borelis, Amphistegina, Heterostegina, Peneroplis) generally live in the oligotrophic, well-lit back- and fore-reef environments. Amphisteginids and peneroplids were among the few taxa found in the bay environments, probably due to their preferences for phytal substrates and tolerance to moderate levels of eutrophication. The fringing reef environments along the outer bay are characterized by Borelis schlumbergeri, Heterostegina depressa, Textularia spp. and various miliolids which represent a hotspot of diversity within the complex reef-lagoon system of Moorea. The high foraminiferal Fisher α and species richness diversity in outer bay fringing reefs

  4. Spatial Abundance and Distribution of Potential Microbes and Functional Genes Associated with Anaerobic Mineralization of Pentachlorophenol in a Cylindrical Reactor

    NASA Astrophysics Data System (ADS)

    Li, Zhi-Ling; Nan, Jun; Huang, Cong; Liang, Bin; Liu, Wen-Zong; Cheng, Hao-Yi; Zhang, Chunfang; Zhang, Dongdong; Kong, Deyong; Kanamaru, Kyoko; Kobayashi, Tetsuo; Wang, Ai-Jie; Katayama, Arata

    2016-01-01

    Functional interplays of microbial activity, genetic diversity and contaminant transformation are poorly understood in reactors for mineralizing halogenated aromatics anaerobically. Here, we investigated abundance and distribution of potential microbes and functional genes associated with pentachlorophenol (PCP) anaerobic mineralization in a continuous-flow cylindrical reactor (15 cm in length). PCP dechlorination and the metabolite (phenol) were observed at segments 0–8 cm from inlet, where key microbes, including potential reductive dechlorinators (Dehalobacter, Sulfurospirillum, Desulfitobacterium and Desulfovibrio spp.) and phenol degraders (Cryptanaerobacter and Syntrophus spp.), as well as putative functional genes, including putative chlorophenol reductive dehalogenase (cprA) and benzoyl-CoA reductase (bamB), were highly enriched simultaneously. Five types of putative cprAs, three types of putative bamBs and seven types of putative nitrogenase reductase (nifHs) were determined, with their copy numbers decreased gradually from inlet to outlet. Distribution of chemicals, bacteria and putative genes confirmed PCP dechlorination and phenol degradation accomplished in segments 0–5 cm and 0–8 cm, respectively, contributing to a high PCP mineralization rate of 3.86 μM d‑1. Through long-term incubation, dechlorination, phenol degradation and nitrogen fixation bacteria coexisted and functioned simultaneously near inlet (0–8 cm), verified the feasibility of anaerobic mineralization of halogenated aromatics in the compact reactor containing multiple functional microbes.

  5. Spatial Abundance and Distribution of Potential Microbes and Functional Genes Associated with Anaerobic Mineralization of Pentachlorophenol in a Cylindrical Reactor

    PubMed Central

    Li, Zhi-Ling; Nan, Jun; Huang, Cong; Liang, Bin; Liu, Wen-Zong; Cheng, Hao-Yi; Zhang, Chunfang; Zhang, Dongdong; Kong, Deyong; Kanamaru, Kyoko; Kobayashi, Tetsuo; Wang, Ai-Jie; Katayama, Arata

    2016-01-01

    Functional interplays of microbial activity, genetic diversity and contaminant transformation are poorly understood in reactors for mineralizing halogenated aromatics anaerobically. Here, we investigated abundance and distribution of potential microbes and functional genes associated with pentachlorophenol (PCP) anaerobic mineralization in a continuous-flow cylindrical reactor (15 cm in length). PCP dechlorination and the metabolite (phenol) were observed at segments 0–8 cm from inlet, where key microbes, including potential reductive dechlorinators (Dehalobacter, Sulfurospirillum, Desulfitobacterium and Desulfovibrio spp.) and phenol degraders (Cryptanaerobacter and Syntrophus spp.), as well as putative functional genes, including putative chlorophenol reductive dehalogenase (cprA) and benzoyl-CoA reductase (bamB), were highly enriched simultaneously. Five types of putative cprAs, three types of putative bamBs and seven types of putative nitrogenase reductase (nifHs) were determined, with their copy numbers decreased gradually from inlet to outlet. Distribution of chemicals, bacteria and putative genes confirmed PCP dechlorination and phenol degradation accomplished in segments 0–5 cm and 0–8 cm, respectively, contributing to a high PCP mineralization rate of 3.86 μM d−1. Through long-term incubation, dechlorination, phenol degradation and nitrogen fixation bacteria coexisted and functioned simultaneously near inlet (0–8 cm), verified the feasibility of anaerobic mineralization of halogenated aromatics in the compact reactor containing multiple functional microbes. PMID:26750760

  6. Conjugative multi-resistant plasmids in Haihe River and their impacts on the abundance and spatial distribution of antibiotic resistance genes.

    PubMed

    Dang, Bingjun; Mao, Daqing; Xu, Yan; Luo, Yi

    2017-03-15

    In this study, five classes of antibiotic resistance genes (ARGs) were quantified in sediment samples of Haihe River, China, with abundance ranging from 1.39 × 10(4) to 1.58 × 10(10) copies/g dry weight. Meanwhile, antibiotic resistant conjugative plasmids were also isolated from these samples through filter mating assays. In total, 202 transconjugants were isolated and tested for their antibiotic resistance phenotypes, among which 26 different types of conjugative plasmids were observed. The majority of these plasmids showed a multi-resistant phenotype and the most prevalent resistance was tetracycline resistance and sulfonamide resistance. Furthermore, we tested the transfer frequencies of these plasmids, determined their genotypes and then compared the plasmid-borne ARGs with their corresponding abundance in Haihe River. Most of the isolated plasmids exhibited high transfer frequencies to the recipient strain Escherichia coli J53. Plasmids isolated from the urban areas of Haihe River have higher transfer frequencies than the rural areas. Results from comprehensive analysis of plasmid genotypes, ARG abundance and plasmid sequencing confirmed that most of the plasmid-borne ARGs were the dominant genes in the Haihe River. Therefore, conjugative plasmids isolated from the Haihe River plays a crucial role in the dissemination, abundance and spatial distribution of ARGs in Haihe River, especially some unfrequent ARGs like blaGES-1. This study will help to increase the knowledge on the conjugative plasmid-mediated ARG propagation in the environment.

  7. Spatial distribution and abundance of ammonia-oxidizing microorganisms in deep-sea sediments of the Pacific Ocean.

    PubMed

    Luo, Zhu-Hua; Xu, Wei; Li, Meng; Gu, Ji-Dong; Zhong, Tian-Hua

    2015-08-01

    Nitrification, the aerobic oxidation of ammonia to nitrate via nitrite, is performed by nitrifying microbes including ammonia-oxidizing bacteria (AOB) and archaea (AOA). In the current study, the phylogenetic diversity and abundance of AOB and AOA in deep-sea sediments of the Pacific Ocean were investigated using ammonia monooxygenase subunit A (amoA) coding genes as molecular markers. The study uncovered 3 AOB unique operational taxonomic units (OTUs, defined at sequence groups that differ by ≤5 %), which indicates lower diversity than AOA (13 OTUs obtained). All AOB amoA gene sequences were phylogenetically related to amoA sequences similar to those found in marine Nitrosospira species, and all AOA amoA gene sequences were affiliated with the marine sediment clade. Quantitative PCR revealed similar archaeal amoA gene abundances [1.68 × 10(5)-1.89 × 10(6) copies/g sediment (wet weight)] among different sites. Bacterial amoA gene abundances ranged from 5.28 × 10(3) to 2.29 × 10(6) copies/g sediment (wet weight). The AOA/AOB amoA gene abundance ratios ranged from 0.012 to 162 and were negatively correlated with total C and C/N ratio. These results suggest that organic loading may be a key factor regulating the relative abundance of AOA and AOB in deep-sea environments of the Pacific Ocean.

  8. Seasonal and Spatial Environmental Influence on Opisthorchis viverrini Intermediate Hosts, Abundance, and Distribution: Insights on Transmission Dynamics and Sustainable Control

    PubMed Central

    Kim, Christina Sunyoung; Echaubard, Pierre; Suwannatrai, Apiporn; Kaewkes, Sasithorn; Wilcox, Bruce A.; Sripa, Banchob

    2016-01-01

    Background Opisthorchis viverrini (Ov) is a complex-life-cycle trematode affecting 10 million people in SEA (Southeast Asia). Human infection occurs when infected cyprinid fish are consumed raw or undercooked. Ov requires three hosts and presents two free-living parasitic stages. As a consequence Ov transmission and infection in intermediate and human hosts are strongly mediated by environmental factors and understanding how environmental variability influences intermediate host abundance is critical. The objectives of this study were 1) to document water parameters, intermediate hosts abundance and infection spatio-temporal variation, 2) to assess their causal relationships and identify windows of transmission risk. Methodology/Principal Findings Fish and snails were collected monthly for one year at 12 sites in Lawa Lake, an Ov-endemic region of Khon Kaen Province in Northeast Thailand. Physicochemical water parameters [pH, temperature (Tp), dissolved oxygen (DO), Salinity, electrical conductivity (EC), total dissolved solid (TDS), nitrite nitrogen (NO2-N), lead (Pb), total coliform bacteria (TCB) and fecal coliform bacteria (FCB)] were measured. Multivariate analyses, linear models and kriging were used to characterize water parameter variation and its influence on host abundance and infection prevalence. We found that sampling sites could be grouped in three clusters and discriminated along a nitrogen-salinity gradient where higher levels in the lake’s southern region predicted higher Bithynia relative abundance (P<0.05) and lower snail and fish species diversity (P<0.05). Highest Bithynia abundance occurred during rainy season (P<0.001), independently of site influence. Cyprinids were the most abundant fish family and higher cyprinid relative abundance was found in areas with higher Bithynia relative abundance (P<0.05). Ov infection in snails was anecdotal while Ov infection in fish was higher in the southern region (P<0.001) at sites showing high FCB

  9. Landscape factors influencing the spatial distribution and abundance of mosquito vector Culex quinquefasciatus (Diptera: Culicidae) in a mixed residential-agricultural community in Hawai'i

    USGS Publications Warehouse

    Reiter, M.E.; Lapointe, D.A.

    2007-01-01

    Mosquito-borne avian diseases, principally avian malaria (Plasmodium relictum Grassi and Feletti) and avian pox (Avipoxvirus sp.) have been implicated as the key limiting factor associated with recent declines of endemic avifauna in the Hawaiian Island archipelago. We present data on the relative abundance, infection status, and spatial distribution of the primary mosquito vector Culex quinquefasciatus Say (Diptera: Culicidae) across a mixed, residential-agricultural community adjacent to Hawai'i Volcanoes National Park on Hawai'i Island. We modeled the effect of agriculture and forest fragmentation in determining relative abundance of adult Cx. quinquefasciatus in Volcano Village, and we implement our statistical model in a geographic information system to generate a probability of mosquito capture prediction surface for the study area. Our model was based on biweekly captures of adult mosquitoes from 20 locations within Volcano Village from October 2001 to April 2003. We used mixed effects logistic regression to model the probability of capturing a mosquito, and we developed a set of 17 competing models a priori to specifically evaluate the effect of agriculture and fragmentation (i.e., residential landscapes) at two spatial scales. In total, 2,126 mosquitoes were captured in CO 2-baited traps with an average probability of 0.27 (SE = 0.10) of capturing one or more mosquitoes per trap night. Twelve percent of mosquitoes captured were infected with P. relictum. Our data indicate that agricultural lands and forest fragmentation significantly increase the probability of mosquito capture. The prediction surface identified areas along the Hawai'i Volcanoes National Park boundary that may have high relative abundance of the vector. Our data document the potential of avian malaria transmission in residential-agricultural landscapes and support the need for vector management that extends beyond reserve boundaries and considers a reserve's spatial position in a highly

  10. Diversity, abundance, and spatial distribution of riverine microbial communities response to effluents from swine farm versus farmhouse restaurant.

    PubMed

    Lu, Xiao-Ming; Lu, Peng-Zhen

    2014-09-01

    The 454 pyrosequencing technique was applied to evaluate microbial community composition in sediment and water samples collected from the river receiving effluents from a swine farm and a farmhouse restaurant, respectively. For each sample, 4,600 effective sequences were selected and used to do the bacterial diversity and abundance analysis, respectively. Bacterial phylotype richness in the river sediment sample without effluent input was higher than the other samples, and the river water sample with addition of effluent from the swine farm had the least richness. Effluents from both the swine farm and the farmhouse restaurant have the potential to decrease the bacterial diversity and abundance in the river sediment and water, especially it is more significant in the river sediment. Effect of effluent from the swine farm on riverine bacterial communities was more significant than that from the farmhouse restaurant. Characterization of bacterial community composition in sediments from two tributaries of the downstream river showed that various effluents from the swine farm and the farmhouse restaurant have the similar potential to reduce the natural variability in riverine ecosystems, and contribute to the biotic homogenization in the river sediment.

  11. Spatial ecological processes and local factors predict the distribution and abundance of spawning by steelhead (Oncorhynchus mykiss) across a complex riverscape

    USGS Publications Warehouse

    Falke, Jeffrey A.; Dunham, Jason B.; Jordan, Christopher E.; McNyset, Kris M.; Reeves, Gordon H.

    2013-01-01

    Processes that influence habitat selection in landscapes involve the interaction of habitat composition and configuration and are particularly important for species with complex life cycles. We assessed the relative influence of landscape spatial processes and local habitat characteristics on patterns in the distribution and abundance of spawning steelhead (Oncorhynchus mykiss), a threatened salmonid fish, across ~15,000 stream km in the John Day River basin, Oregon, USA. We used hurdle regression and a multi-model information theoretic approach to identify the relative importance of covariates representing key aspects of the steelhead life cycle (e.g., site access, spawning habitat quality, juvenile survival) at two spatial scales: within 2-km long survey reaches (local sites) and ecological neighborhoods (5 km) surrounding the local sites. Based on Akaike’s Information Criterion, models that included covariates describing ecological neighborhoods provided the best description of the distribution and abundance of steelhead spawning given the data. Among these covariates, our representation of offspring survival (growing-season-degree-days, °C) had the strongest effect size (7x) relative to other predictors. Predictive performances of model-averaged composite and neighborhood-only models were better than a site-only model based on both occurrence (percentage of sites correctly classified = 0.80±0.03 SD, 0.78±0.02 vs. 0.62±0.05, respectively) and counts (root mean square error = 3.37, 3.93 vs. 5.57, respectively). The importance of both temperature and stream flow for steelhead spawning suggest this species may be highly sensitive to impacts of land and water uses, and to projected climate impacts in the region and that landscape context, complementation, and connectivity will drive how this species responds to future environments.

  12. Spatial Ecological Processes and Local Factors Predict the Distribution and Abundance of Spawning by Steelhead (Oncorhynchus mykiss) across a Complex Riverscape

    PubMed Central

    Falke, Jeffrey A.; Dunham, Jason B.; Jordan, Christopher E.; McNyset, Kristina M.; Reeves, Gordon H.

    2013-01-01

    Processes that influence habitat selection in landscapes involve the interaction of habitat composition and configuration and are particularly important for species with complex life cycles. We assessed the relative influence of landscape spatial processes and local habitat characteristics on patterns in the distribution and abundance of spawning steelhead (Oncorhynchus mykiss), a threatened salmonid fish, across ∼15,000 stream km in the John Day River basin, Oregon, USA. We used hurdle regression and a multi-model information theoretic approach to identify the relative importance of covariates representing key aspects of the steelhead life cycle (e.g., site access, spawning habitat quality, juvenile survival) at two spatial scales: within 2-km long survey reaches (local sites) and ecological neighborhoods (5 km) surrounding the local sites. Based on Akaike’s Information Criterion, models that included covariates describing ecological neighborhoods provided the best description of the distribution and abundance of steelhead spawning given the data. Among these covariates, our representation of offspring survival (growing-season-degree-days, °C) had the strongest effect size (7x) relative to other predictors. Predictive performances of model-averaged composite and neighborhood-only models were better than a site-only model based on both occurrence (percentage of sites correctly classified = 0.80±0.03 SD, 0.78±0.02 vs. 0.62±0.05, respectively) and counts (root mean square error = 3.37, 3.93 vs. 5.57, respectively). The importance of both temperature and stream flow for steelhead spawning suggest this species may be highly sensitive to impacts of land and water uses, and to projected climate impacts in the region and that landscape context, complementation, and connectivity will drive how this species responds to future environments. PMID:24265762

  13. Changes in abundance and spatial distribution of geese molting near Teshekpuk Lake, Alaska: Interspecific competition or ecological change?

    USGS Publications Warehouse

    Flint, P.L.; Mallek, E.J.; King, R.J.; Schmutz, J.A.; Bollinger, K.S.; Derksen, D.V.

    2008-01-01

    Goose populations molting in the Teshekpuk Lake Special Area of the National Petroleum Reserve-Alaska have changed in size and distribution over the past 30 years. Black brant (Branta bernicla nigricans) are relatively stable in numbers but are shifting from large, inland lakes to salt marshes. Concurrently, populations of greater white-fronted geese (Anser albifrons frontalis) have increased seven fold. Populations of Canada geese (Branta canadensis and/or B. hutchinsii) are stable with little indication of distributional shifts. The lesser snow goose (Anser caerulescens caerulescens) population is proportionally small, but increasing rapidly. Coastline erosion of the Beaufort Sea has altered tundra habitats by allowing saltwater intrusion, which has resulted in shifts in composition of forage plant species. We propose two alternative hypotheses for the observed shift in black brant distribution. Ecological change may have altered optimal foraging habitats for molting birds, or alternatively, interspecific competition between black brant and greater white-fronted geese may be excluding black brant from preferred habitats. Regardless of the causative mechanism, the observed shifts in species distributions are an important consideration for future resource planning. ?? 2007 Springer-Verlag.

  14. Spatial distribution of planktivorous fish schools in relation to krill abundance and local hydrography off Otago, New Zealand

    NASA Astrophysics Data System (ADS)

    O'Driscoll, Richard L.; McClatchie, Sam

    Side-scan sonar allows mapping of near-surface schools of fish, but it has seldom been used for this purpose. Data were collected off the coast of Otago, New Zealand for 21 days during 1994 to 1996 using a 130 kHz Klein 595 digital side-scan sonar. A total of 2198 schools were detected. Of these, 348 schools of barracouta ( Thyrsites atun), 67 schools of jack mackerel ( Trachurus murphyi), and 17 schools of slender tuna ( Allothunnus fallai) were identified. Barracouta schools were significantly smaller than schools of jack mackerel or slender tuna, but the size of schools was not related to state of tide, location, water depth, salinity, temperature, or density of krill. Fish schools were detected throughout daylight hours, but dispersed at night. Analysis of stomach contents revealed barracouta, jack mackerel and slender tuna were feeding on krill, Nyctiphanes australis, and fish schools occurred in areas with high densities of N. australis. Variability in the abundance of N. australis was related to salinity; catches were highest in a band of low-salinity water which was present in the study area following periods of high river runoff.

  15. Spatial patterns in the abundance of the coastal horned lizard

    USGS Publications Warehouse

    Fisher, Robert N.; Suarez, Andrew V.; Case, Ted J.

    2002-01-01

    Coastal horned lizards (   Phrynosoma coronatum) have undergone severe declines in southern California and are a candidate species for state and federal listing under the Endangered Species Act. Quantitative data on their habitat use, abundance, and distribution are lacking, however. We investigated the determinants of abundance for coastal horned lizards at multiple spatial scales throughout southern California. Specifically, we estimated lizard distribution and abundance by establishing 256 pitfall trap arrays clustered within 21 sites across four counties. These arrays were sampled bimonthly for 2–3 years. At each array we measured 26 “local” site descriptors and averaged these values with other “regional” measures to determine site characteristics. Our analyses were successful at identifying factors within and among sites correlated with the presence and abundance of coastal horned lizards. These factors included the absence of the invasive Argentine ant (  Linepithema humile) (and presence of native ant species eaten by the lizards), the presence of chaparral community plants, and the presence of sandy substrates. At a regional scale the relative abundance of Argentine ants was correlated with the relative amount of developed edge around a site. There was no evidence for spatial autocorrelation, even at the scale of the arrays within sites, suggesting that the determinants of the presence or absence and abundance of horned lizard can vary over relatively small spatial scales ( hundreds of meters). Our results suggest that a gap-type approach may miss some of the fine-scale determinants of species abundance in fragmented habitats.

  16. The shape of terrestrial abundance distributions.

    PubMed

    Alroy, John

    2015-09-01

    Ecologists widely accept that the distribution of abundances in most communities is fairly flat but heavily dominated by a few species. The reason for this is that species abundances are thought to follow certain theoretical distributions that predict such a pattern. However, previous studies have focused on either a few theoretical distributions or a few empirical distributions. I illustrate abundance patterns in 1055 samples of trees, bats, small terrestrial mammals, birds, lizards, frogs, ants, dung beetles, butterflies, and odonates. Five existing theoretical distributions make inaccurate predictions about the frequencies of the most common species and of the average species, and most of them fit the overall patterns poorly, according to the maximum likelihood-related Kullback-Leibler divergence statistic. Instead, the data support a low-dominance distribution here called the "double geometric." Depending on the value of its two governing parameters, it may resemble either the geometric series distribution or the lognormal series distribution. However, unlike any other model, it assumes both that richness is finite and that species compete unequally for resources in a two-dimensional niche landscape, which implies that niche breadths are variable and that trait distributions are neither arrayed along a single dimension nor randomly associated. The hypothesis that niche space is multidimensional helps to explain how numerous species can coexist despite interacting strongly.

  17. The shape of terrestrial abundance distributions

    PubMed Central

    Alroy, John

    2015-01-01

    Ecologists widely accept that the distribution of abundances in most communities is fairly flat but heavily dominated by a few species. The reason for this is that species abundances are thought to follow certain theoretical distributions that predict such a pattern. However, previous studies have focused on either a few theoretical distributions or a few empirical distributions. I illustrate abundance patterns in 1055 samples of trees, bats, small terrestrial mammals, birds, lizards, frogs, ants, dung beetles, butterflies, and odonates. Five existing theoretical distributions make inaccurate predictions about the frequencies of the most common species and of the average species, and most of them fit the overall patterns poorly, according to the maximum likelihood–related Kullback-Leibler divergence statistic. Instead, the data support a low-dominance distribution here called the “double geometric.” Depending on the value of its two governing parameters, it may resemble either the geometric series distribution or the lognormal series distribution. However, unlike any other model, it assumes both that richness is finite and that species compete unequally for resources in a two-dimensional niche landscape, which implies that niche breadths are variable and that trait distributions are neither arrayed along a single dimension nor randomly associated. The hypothesis that niche space is multidimensional helps to explain how numerous species can coexist despite interacting strongly. PMID:26601249

  18. Diversity, Abundance, and Spatial Distribution of Sediment Ammonia-Oxidizing Betaproteobacteria in Response to Environmental Gradients and Coastal Eutrophication in Jiaozhou Bay, China▿ †

    PubMed Central

    Dang, Hongyue; Li, Jing; Chen, Ruipeng; Wang, Lin; Guo, Lizhong; Zhang, Zhinan; Klotz, Martin G.

    2010-01-01

    Ongoing anthropogenic eutrophication of Jiaozhou Bay offers an opportunity to study the influence of human activity on bacterial communities that drive biogeochemical cycling. Nitrification in coastal waters appears to be a sensitive indicator of environmental change, suggesting that function and structure of the microbial nitrifying community may be associated closely with environmental conditions. In the current study, the amoA gene was used to unravel the relationship between sediment aerobic obligate ammonia-oxidizing Betaproteobacteria (Beta-AOB) and their environment in Jiaozhou Bay. Protein sequences deduced from amoA gene sequences grouped within four distinct clusters in the Nitrosomonas lineage, including a putative new cluster. In addition, AmoA sequences belonging to three newly defined clusters in the Nitrosospira lineage were also identified. Multivariate statistical analyses indicated that the studied Beta-AOB community structures correlated with environmental parameters, of which nitrite-N and sediment sand content had significant impact on the composition, structure, and distribution of the Beta-AOB community. Both amoA clone library and quantitative PCR (qPCR) analyses indicated that continental input from the nearby wastewater treatment plants and polluted rivers may have significant impact on the composition and abundance of the sediment Beta-AOB assemblages in Jiaozhou Bay. Our work is the first report of a direct link between a sedimentological parameter and the composition and distribution of the sediment Beta-AOB and indicates the potential for using the Beta-AOB community composition in general and individual isolates or environmental clones in the Nitrosomonas oligotropha lineage in particular as bioindicators and biotracers of pollution or freshwater or wastewater input in coastal environments. PMID:20511433

  19. Unmanned Aircraft Systems for Studying Spatial Abundance of Ungulates: Relevance to Spatial Epidemiology

    PubMed Central

    Barasona, José A.; Mulero-Pázmány, Margarita; Acevedo, Pelayo; Negro, Juan J.; Torres, María J.; Gortázar, Christian; Vicente, Joaquín

    2014-01-01

    Complex ecological and epidemiological systems require multidisciplinary and innovative research. Low cost unmanned aircraft systems (UAS) can provide information on the spatial pattern of hosts’ distribution and abundance, which is crucial as regards modelling the determinants of disease transmission and persistence on a fine spatial scale. In this context we have studied the spatial epidemiology of tuberculosis (TB) in the ungulate community of Doñana National Park (South-western Spain) by modelling species host (red deer, fallow deer and cattle) abundance at fine spatial scale. The use of UAS high-resolution images has allowed us to collect data to model the environmental determinants of host abundance, and in a further step to evaluate their relationships with the spatial risk of TB throughout the ungulate community. We discuss the ecological, epidemiological and logistic conditions under which UAS may contribute to study the wildlife/livestock sanitary interface, where the spatial aggregation of hosts becomes crucial. These findings are relevant for planning and implementing research, fundamentally when managing disease in multi-host systems, and focusing on risky areas. Therefore, managers should prioritize the implementation of control strategies to reduce disease of conservation, economic and social relevance. PMID:25551673

  20. Estimating abundance of mountain lions from unstructured spatial sampling

    USGS Publications Warehouse

    Russell, Robin E.; Royle, J. Andrew; Desimone, Richard; Schwartz, Michael K.; Edwards, Victoria L.; Pilgrim, Kristy P.; Mckelvey, Kevin S.

    2012-01-01

    Mountain lions (Puma concolor) are often difficult to monitor because of their low capture probabilities, extensive movements, and large territories. Methods for estimating the abundance of this species are needed to assess population status, determine harvest levels, evaluate the impacts of management actions on populations, and derive conservation and management strategies. Traditional mark–recapture methods do not explicitly account for differences in individual capture probabilities due to the spatial distribution of individuals in relation to survey effort (or trap locations). However, recent advances in the analysis of capture–recapture data have produced methods estimating abundance and density of animals from spatially explicit capture–recapture data that account for heterogeneity in capture probabilities due to the spatial organization of individuals and traps. We adapt recently developed spatial capture–recapture models to estimate density and abundance of mountain lions in western Montana. Volunteers and state agency personnel collected mountain lion DNA samples in portions of the Blackfoot drainage (7,908 km2) in west-central Montana using 2 methods: snow back-tracking mountain lion tracks to collect hair samples and biopsy darting treed mountain lions to obtain tissue samples. Overall, we recorded 72 individual capture events, including captures both with and without tissue sample collection and hair samples resulting in the identification of 50 individual mountain lions (30 females, 19 males, and 1 unknown sex individual). We estimated lion densities from 8 models containing effects of distance, sex, and survey effort on detection probability. Our population density estimates ranged from a minimum of 3.7 mountain lions/100 km2 (95% Cl 2.3–5.7) under the distance only model (including only an effect of distance on detection probability) to 6.7 (95% Cl 3.1–11.0) under the full model (including effects of distance, sex, survey effort, and

  1. Influence of edge on predator prey distribution and abundance

    NASA Astrophysics Data System (ADS)

    Ferguson, Steven H.

    2004-03-01

    I investigated the effect of spatial configuration on distribution and abundance of invertebrate trophic groups by counting soil arthropods under boxes (21 × 9.5 cm) arranged in six different patterns that varied in the amount of edge (137-305 cm). I predicted fewer individuals from the consumer trophic group (Collembola) in box groups with greater amount of edge. This prediction was based on the assumption that predators (mites, ants, spiders, centipedes) select edge during foraging and thereby reduce abundance of the less mobile consumer group under box patterns with greater edge. Consumer abundance (Collembola) was not correlated with amount of edge. Among the predator groups, mite, ant and centipede abundance related to the amount of edge of box groups. However, in contrast to predictions, abundance of these predators was negatively correlated with amount of edge in box patterns. All Collembola predators, with the exception of ants, were less clumped in distribution than Collembola. The results are inconsistent with the view that predators used box edges to predate the less mobile consumer trophic group. Alternative explanations for the spatial patterns other than predator-prey relations include (1) a negative relationship between edge and moisture, (2) a positive relationship between edge and detritus decomposition (i.e. mycelium as food for the consumer group), and (3) a negative relationship between edge and the interstices between adjacent boxes. Landscape patterns likely affect microclimate, food, and predator-prey relations and, therefore, future experimental designs need to control these factors individually to distinguish among alternative hypotheses.

  2. Monitoring Temporal Abundance and Spatial Distribution of Aedes polynesiensis Using BG-Sentinel Traps in Neighboring Habitats on Raiatea, Society Archipelago, French Polynesia

    PubMed Central

    MERCER, DAVID R.; BOSSIN, HERVE; SANG, MICHEL CHEONG; O’CONNOR, LINDA; DOBSON, STEPHEN L.

    2012-01-01

    Adult numbers and sizes of mosquitoes were monitored for 2 yr in neighboring habitats on the western coast of Raiatea (Society Archipelago) in anticipation of testing new vector control technologies. Aedes polynesiensis Marks females comprised the overwhelming majority (≈99%) of the three species of mosquitoes captured in Biogent Sentinel traps placed at fixed sites on three small satellite islands (motus) of the western lagoon and on the shoreline of Raiatea. Aedes polynesiensis males, Aedes aegypti (L.), and Culex quinquefasciatus Say rarely were collected. Numbers of Ae. polynesiensis females per collection differed among trapping dates and locations, with the majority of females captured on two motus, Horea and Toamaro. Shoreline and Horea females had significantly longer mean wing lengths than females from Tiano and Toamaro. Thus, wing lengths were influenced more by local developmental conditions than overall numbers of adults. Significantly more females were captured during the wet season than the dry season. Nonetheless, at least on the two highly productive motus, dry-season females had larger wing lengths than their wet season counterparts. Local weather patterns predicted about half the variation in mosquito numbers. Differences in vector abundance observed when comparing neighboring motus are likely because of differences in human activity and mosquito suppression. PMID:22308771

  3. Fish abundance, distribution, and habitat use

    NASA Astrophysics Data System (ADS)

    Hoffnagle, Timothy L.; Valdez, Richard A.; Speas, David W.

    The 1996 controlled flood in the Colorado River, Grand Canyon, was designed, in part, to improve conditions for juvenile native fishes by reshaping habitat and displacing non-native fishes. We examined changes in abundance and distributions of native and non-native fishes immediately before and after the controlled flood and recovery of affected species 2.5 and 6 months after. Catch-per-unit-effort (CPUE) of humpback chub and flannelmouth sucker did not differ in pre- versus post-flood periods. CPUE of plains killifish, bluehead sucker and fathead minnow decreased following the flood, and CPUE of speckled dace and rainbow trout increased. Juvenile humpback chub remained primarily along talus shorelines at all discharges, while at higher discharges, speckled dace shifted from mid-channel riffles to debris fans and talus and fathead minnows used primarily vegetated shorelines. There was evidence of some downstream displacement of plains killifish, fathead minnows and rainbow trout. Catch rates of all species showed seasonal variation following the flood, with summer recruitment of young-of-the-year, particularly fathead minnows and plains killifish. Although short-term reductions in catch rates of fathead minnows and plains killifish occurred, these populations returned to pre-flood densities by 6 months after the flood. Catch rates of all species before and after the flood were similar to those recorded in previous years. We determined that the controlled flood did not significantly alter native fish distributions or abundances through Grand Canyon.

  4. Dengue Vectors and their Spatial Distribution

    PubMed Central

    Higa, Yukiko

    2011-01-01

    The distribution of dengue vectors, Ae. aegypti and Ae. albopictus, is affected by climatic factors. In addition, since their life cycles are well adapted to the human environment, environmental changes resulting from human activity such as urbanization exert a great impact on vector distribution. The different responses of Ae. aegypti and Ae albopictus to various environments result in a difference in spatial distribution along north-south and urban-rural gradients, and between the indoors and outdoors. In the north-south gradient, climate associated with survival is an important factor in spatial distribution. In the urban-rural gradient, different distribution reflects a difference in adult niches and is modified by geographic and human factors. The direct response of the two species to the environment around houses is related to different spatial distribution indoors and outdoors. Dengue viruses circulate mainly between human and vector mosquitoes, and the vector presence is a limiting factor of transmission. Therefore, spatial distribution of dengue vectors is a significant concern in the epidemiology of the disease. Current technologies such as GIS, satellite imagery and statistical models allow researchers to predict the spatial distribution of vectors in the changing environment. Although it is difficult to confirm the actual effect of environmental and climate changes on vector abundance and vector-borne diseases, environmental changes caused by humans and human behavioral changes due to climate change can be expected to exert an impact on dengue vectors. Longitudinal monitoring of dengue vectors and viruses is therefore necessary. PMID:22500133

  5. Improving removal-based estimates of abundance by sampling a population of spatially distinct subpopulations

    USGS Publications Warehouse

    Dorazio, R.M.; Jelks, H.L.; Jordan, F.

    2005-01-01

     A statistical modeling framework is described for estimating the abundances of spatially distinct subpopulations of animals surveyed using removal sampling. To illustrate this framework, hierarchical models are developed using the Poisson and negative-binomial distributions to model variation in abundance among subpopulations and using the beta distribution to model variation in capture probabilities. These models are fitted to the removal counts observed in a survey of a federally endangered fish species. The resulting estimates of abundance have similar or better precision than those computed using the conventional approach of analyzing the removal counts of each subpopulation separately. Extension of the hierarchical models to include spatial covariates of abundance is straightforward and may be used to identify important features of an animal's habitat or to predict the abundance of animals at unsampled locations.

  6. Abundance and Distribution of Geographically Isolated ...

    EPA Pesticide Factsheets

    Geographically isolated wetlands (GIWS) are important landscape elements involved in hydrologic, biogeochemical, and biological functioning. Their influence, under certain circumstances, can significantly affect other waters of the Unites States. However, there have been no data-based estimates of the abundance of GIWs at national scales in the US, frustrating efforts to properly manage the resource. We applied a distance-based floodplain and riparian zone proxy to existing data layers from the National Hydrography Dataset (1:24,000k) and applied a geospatial buffering process to National Wetlands Inventory data to quantify the abundance of connected wetlands at significant and relevant scales. Our analyses suggest GIWs are prevalent throughout the conterminous United States, with exceptional densities in portions of the Gulf and Atlantic Coastal Plains, the Prairie Pothole Region of the Upper Midwest, and significant densities elsewhere. Indeed, over 65,000 km2 of GIWs may exist. We provide further analyses of the types, distributions, and regional extent of these systems. Lastly, we also explore additional connectivity measures associated with adjacency and relative geographic isolation to floodplains and other elements of the hydrologic landscape. Presentation at INTECOL International Wetlands Conference (Changshu, China; Sept. 2016)

  7. A spatial model of bird abundance as adjusted for detection probability

    USGS Publications Warehouse

    Gorresen, P.M.; Mcmillan, G.P.; Camp, R.J.; Pratt, T.K.

    2009-01-01

    Modeling the spatial distribution of animals can be complicated by spatial and temporal effects (i.e. spatial autocorrelation and trends in abundance over time) and other factors such as imperfect detection probabilities and observation-related nuisance variables. Recent advances in modeling have demonstrated various approaches that handle most of these factors but which require a degree of sampling effort (e.g. replication) not available to many field studies. We present a two-step approach that addresses these challenges to spatially model species abundance. Habitat, spatial and temporal variables were handled with a Bayesian approach which facilitated modeling hierarchically structured data. Predicted abundance was subsequently adjusted to account for imperfect detection and the area effectively sampled for each species. We provide examples of our modeling approach for two endemic Hawaiian nectarivorous honeycreepers: 'i'iwi Vestiaria coccinea and 'apapane Himatione sanguinea. ?? 2009 Ecography.

  8. Abundance models improve spatial and temporal prioritization of conservation resources.

    PubMed

    Johnston, Alison; Fink, Daniel; Reynolds, Mark D; Hochachka, Wesley M; Sullivan, Brian L; Bruns, Nicholas E; Hallstein, Eric; Merrifield, Matt S; Matsumoto, Sandi; Kelling, Steve

    2015-10-01

    Conservation prioritization requires knowledge about organism distribution and density. This information is often inferred from models that estimate the probability of species occurrence rather than from models that estimate species abundance, because abundance data are harder to obtain and model. However, occurrence and abundance may not display similar patterns and therefore development of robust, scalable, abundance models is critical to ensuring that scarce conservation resources are applied where they can have the greatest benefits. Motivated by a dynamic land conservation program, we develop and assess a general method for modeling relative abundance using citizen science monitoring data. Weekly estimates of relative abundance and occurrence were compared for prioritizing times and locations of conservation actions for migratory waterbird species in California, USA. We found that abundance estimates consistently provided better rankings of observed counts than occurrence estimates. Additionally, the relationship between abundance and occurrence was nonlinear and varied by species and season. Across species, locations prioritized by occurrence models had only 10-58% overlap with locations prioritized by abundance models, highlighting that occurrence models will not typically identify the locations of highest abundance that are vital for conservation of populations.

  9. Geostatistical Analysis of Spatial Variability of Mineral Abundance and Kd in Frenchman Flat, NTS, Alluvium

    SciTech Connect

    Carle, S F; Zavarin, M; Pawloski, G A

    2002-11-01

    LLNL hydrologic source term modeling at the Cambric site (Pawloski et al., 2000) showed that retardation of radionuclide transport is sensitive to the distribution and amount of radionuclide sorbing minerals. While all mineralogic information available near the Cambric site was used in these early simulations (11 mineral abundance analyses from UE-5n and 9 from RNM-l), these older data sets were qualitative in nature, with detection limits too high to accurately measure many of the important radionuclide sorbing minerals (e.g. iron oxide). Also, the sparse nature of the mineral abundance data permitted only a hypothetical description of the spatial distribution of radionuclide sorbing minerals. Yet, the modeling results predicted that the spatial distribution of sorbing minerals would strongly affect radionuclide transport. Clearly, additional data are needed to improve understanding of mineral abundances and their spatial distributions if model predictions in Frenchman Flat are to be defensible. This report evaluates new high-resolution quantitative X-Ray Diffraction (XRD) data on mineral distributions and their abundances from core samples recently collected from drill hole ER-5-4. The total of 94 samples from ER-5-4 were collected at various spacings to enable evaluation of spatial variability at a variety of spatial scales as small as 0.3 meters and up to hundreds of meters. Additional XRD analyses obtained from drillholes UE-Sn, ER-5-3, and U-11g-1 are used to augment evaluation of vertical spatial variability and permit some evaluation of lateral spatial variability. A total of 163 samples are evaluated. The overall goal of this study is to understand and characterize the spatial variation of sorbing minerals in Frenchman Flat alluvium using geostatistical techniques, with consideration for the potential impact on reactive transport of radionuclides. To achieve this goal requires an effort to ensure that plausible geostatistical models are used to

  10. Liana Abundance, Diversity, and Distribution on Barro Colorado Island, Panama

    PubMed Central

    Schnitzer, Stefan A.; Mangan, Scott A.; Dalling, James W.; Baldeck, Claire A.; Hubbell, Stephen P.; Ledo, Alicia; Muller-Landau, Helene; Tobin, Michael F.; Aguilar, Salomon; Brassfield, David; Hernandez, Andres; Lao, Suzanne; Perez, Rolando; Valdes, Oldemar; Yorke, Suzanne Rutishauser

    2012-01-01

    Lianas are a key component of tropical forests; however, most surveys are too small to accurately quantify liana community composition, diversity, abundance, and spatial distribution – critical components for measuring the contribution of lianas to forest processes. In 2007, we tagged, mapped, measured the diameter, and identified all lianas ≥1 cm rooted in a 50-ha plot on Barro Colorado Island, Panama (BCI). We calculated liana density, basal area, and species richness for both independently rooted lianas and all rooted liana stems (genets plus clones). We compared spatial aggregation patterns of liana and tree species, and among liana species that varied in the amount of clonal reproduction. We also tested whether liana and tree densities have increased on BCI compared to surveys conducted 30-years earlier. This study represents the most comprehensive spatially contiguous sampling of lianas ever conducted and, over the 50 ha area, we found 67,447 rooted liana stems comprising 162 species. Rooted lianas composed nearly 25% of the woody stems (trees and lianas), 35% of woody species richness, and 3% of woody basal area. Lianas were spatially aggregated within the 50-ha plot and the liana species with the highest proportion of clonal stems more spatially aggregated than the least clonal species, possibly indicating clonal stem recruitment following canopy disturbance. Over the past 30 years, liana density increased by 75% for stems ≥1 cm diameter and nearly 140% for stems ≥5 cm diameter, while tree density on BCI decreased 11.5%; a finding consistent with other neotropical forests. Our data confirm that lianas contribute substantially to tropical forest stem density and diversity, they have highly clumped distributions that appear to be driven by clonal stem recruitment into treefall gaps, and they are increasing relative to trees, thus indicating that lianas will play a greater role in the future dynamics of BCI and other neotropical forests. PMID:23284889

  11. Spatial Variations of Dust Abundances Across the Large Magellanic Cloud

    NASA Astrophysics Data System (ADS)

    Paradis, Déborah; Reach, William T.; Bernard, Jean-Philippe; Block, Miwa; Engelbracht, Chad W.; Gordon, Karl; Hora, Joseph L.; Indebetouw, Remy; Kawamura, Akiko; Meade, Marilyn; Meixner, Margaret; Sewilo, Marta; Vijh, Uma P.; Volk, Kevin

    2009-07-01

    Using the data obtained with the Spitzer Space Telescope as part of the Surveying the Agents of a Galaxy's Evolution (SAGE) legacy survey, we have studied the variations of the dust composition and abundance across the Large Magellanic Cloud (LMC). Such variations are expected, as the explosive events which have lead to the formation of the many H I shells observed should have affected the dust properties. Using a model and comparing with a reference spectral energy distribution from our Galaxy, we deduce the relative abundance variations of small dust grains across the LMC. We examined the infrared color ratios as well as the relative abundances of very small grains (VSGs) and polycyclic aromatic hydrocarbons (PAHs) relative to the big grain abundance. Results show that each dust component could have different origins or evolution in the interstellar medium (ISM). The VSG abundance traces the star formation activity and could result from shattering of larger grains, whereas the PAH abundance increases around molecular clouds as well as in the stellar bar, where they could have been injected into the ISM during mass loss from old stars.

  12. SPATIAL VARIATIONS OF DUST ABUNDANCES ACROSS THE LARGE MAGELLANIC CLOUD

    SciTech Connect

    Paradis, Deborah; Reach, William T.; Bernard, Jean-Philippe; Block, Miwa; Engelbracht, Chad W.; Gordon, Karl; Hora, Joseph L.; Indebetouw, Remy; Kawamura, Akiko; Meade, Marilyn; Meixner, Margaret; Sewilo, Marta; Vijh, Uma P.; Volk, Kevin

    2009-07-15

    Using the data obtained with the Spitzer Space Telescope as part of the Surveying the Agents of a Galaxy's Evolution (SAGE) legacy survey, we have studied the variations of the dust composition and abundance across the Large Magellanic Cloud (LMC). Such variations are expected, as the explosive events which have lead to the formation of the many H I shells observed should have affected the dust properties. Using a model and comparing with a reference spectral energy distribution from our Galaxy, we deduce the relative abundance variations of small dust grains across the LMC. We examined the infrared color ratios as well as the relative abundances of very small grains (VSGs) and polycyclic aromatic hydrocarbons (PAHs) relative to the big grain abundance. Results show that each dust component could have different origins or evolution in the interstellar medium (ISM). The VSG abundance traces the star formation activity and could result from shattering of larger grains, whereas the PAH abundance increases around molecular clouds as well as in the stellar bar, where they could have been injected into the ISM during mass loss from old stars.

  13. Distribution and Abundance of Mars' Atmospheric Argon

    NASA Technical Reports Server (NTRS)

    Sprague, A. L.; Boynton, W. V.; Kerry, K. E.; Nelli, Steven; Murphy, Jim; Reedy, R. C.; Metzger, A. E.; Hunten, D. M.; Janes, K. D.; Crombie, M. K.

    2005-01-01

    One and one half Mars years (MY 26 and 27) of atmospheric Argon measurements are described and studied in the context of understanding how Argon, a minor constituent of Mars atmosphere that does not condense at Mars temperatures, can be used to study martian circulation and dynamics. Argon data are from the 2001 Mars Odyssey Gamma Subsystem (GS) of the suite of three instruments comprising the Gamma Ray Spectrometer (GRS). A comprehensive data analysis including gamma-ray production and attenuation by the atmosphere is included. Of particular interest is the enhanced abundance of Ar over the observed Ar abundance at lower latitudes at south (up to a factor of 10) and north (up to a factor of 4) polar regions during winter. Calibration of the measurements to actual Ar abundance is possible because GS measurements cover the same latitude and season as measurements made by the gas chromatograph mass spectrometer (GCMS) on Viking Landers 1 and 2 (VL1 and VL2). [2].

  14. Relating mesocarnivore relative abundance to anthropogenic land-use with a hierarchical spatial count model

    USGS Publications Warehouse

    Crimmins, Shawn M.; Walleser, Liza R.; Hertel, Dan R.; McKann, Patrick C.; Rohweder, Jason J.; Thogmartin, Wayne E.

    2016-01-01

    There is growing need to develop models of spatial patterns in animal abundance, yet comparatively few examples of such models exist. This is especially true in situations where the abundance of one species may inhibit that of another, such as the intensively-farmed landscape of the Prairie Pothole Region (PPR) of the central United States, where waterfowl production is largely constrained by mesocarnivore nest predation. We used a hierarchical Bayesian approach to relate the distribution of various land-cover types to the relative abundances of four mesocarnivores in the PPR: coyote Canis latrans, raccoon Procyon lotor, red fox Vulpes vulpes, and striped skunk Mephitis mephitis. We developed models for each species at multiple spatial resolutions (41.4 km2, 10.4 km2, and 2.6 km2) to address different ecological and management-related questions. Model results for each species were similar irrespective of resolution. We found that the amount of row-crop agriculture was nearly ubiquitous in our best models, exhibiting a positive relationship with relative abundance for each species. The amount of native grassland land-cover was positively associated with coyote and raccoon relative abundance, but generally absent from models for red fox and skunk. Red fox and skunk were positively associated with each other, suggesting potential niche overlap. We found no evidence that coyote abundance limited that of other mesocarnivore species, as might be expected under a hypothesis of mesopredator release. The relationships between relative abundance and land-cover types were similar across spatial resolutions. Our results indicated that mesocarnivores in the PPR are most likely to occur in portions of the landscape with large amounts of agricultural land-cover. Further, our results indicated that track-survey data can be used in a hierarchical framework to gain inferences regarding spatial patterns in animal relative abundance.

  15. Visualizing Spatially Varying Distribution Data

    NASA Technical Reports Server (NTRS)

    Kao, David; Luo, Alison; Dungan, Jennifer L.; Pang, Alex; Biegel, Bryan A. (Technical Monitor)

    2002-01-01

    Box plot is a compact representation that encodes the minimum, maximum, mean, median, and quarters information of a distribution. In practice, a single box plot is drawn for each variable of interest. With the advent of more accessible computing power, we are now facing the problem of visual icing data where there is a distribution at each 2D spatial location. Simply extending the box plot technique to distributions over 2D domain is not straightforward. One challenge is reducing the visual clutter if a box plot is drawn over each grid location in the 2D domain. This paper presents and discusses two general approaches, using parametric statistics and shape descriptors, to present 2D distribution data sets. Both approaches provide additional insights compared to the traditional box plot technique

  16. Water Vapour Abundance and Distribution in the Lower Venusian Atmosphere

    NASA Astrophysics Data System (ADS)

    Chamberlain, S.; Bailey, J.

    2012-04-01

    We present ground-based observations and modelling studies of water vapour abundance and distribution in the Venusian lower atmosphere through analysis of absorption band depths within the 1.18 μm window. The lower atmosphere of Venus is difficult to study by both in situ and remote instruments. This is due to the planet wide cloud cover that obscures visual wavelengths and surface pressures approaching 100 times that of the Earth. In 1984 ground based observations resulted in the discovery of atmospheric windows on the Venusian nightside (Allen and Crawford, 1984). Here, near infrared radiation originating at the surface and lower atmosphere, pass relatively unimpeded through the Venus clouds. This discovery enabled remote studies of the Venusian subcloud region. Determining the abundance and distribution of water vapour is key to understanding the development, maintenance and links between major radiative and dynamical features of the Venus atmosphere. Water vapour in the lower atmosphere plays an important role in heat transfer and is pertinent to the runaway greenhouse effect and dynamical superrotation observed on Venus. Detailed studies of water vapour abundance and distribution throughout the lower atmosphere of Venus are therefore needed in order to develop accurate chemical, radiative and dynamical models. Ground-based spatially resolved near infrared spectroscopic observations of the Venusian nightside have been obtained from Siding Spring Observatory at each inferior conjunction since 2002. Observations have been made using the IRIS2 instrument on the Anglo-Australian Telescope and CASPIR on the 2.3m ANU telescope. The model VSTAR (Bailey and Kedziora-Chudczer 2012) is used to simulate the observed Venus spectra as seen through the Earth's atmosphere and best fit water vapour abundances are found for approximately 300 locations across the Venus nightside disk. Recent improvements in ground-based near-infrared instruments allow a substantial improvement

  17. Spatial predictability of juvenile fish species richness and abundance in a coral reef environment

    NASA Astrophysics Data System (ADS)

    Mellin, C.; Andréfouët, S.; Ponton, D.

    2007-12-01

    Juvenile reef fish communities represent an essential component of coral reef ecosystems in the current focus of fish population dynamics and coral reef resilience. Juvenile fish survival depends on habitat characteristics and is, following settlement, the first determinant of the number of individuals within adult populations. The goal of this study was to provide methods for mapping juvenile fish species richness and abundance into spatial domains suitable for micro and meso-scale analysis and management decisions. Generalized Linear Models predicting juvenile fish species richness and abundance were developed according to spatial and temporal environmental variables measured from 10 m up to 10 km in the southwest lagoon of New Caledonia. The statistical model was further spatially generalized using a 1.5-m resolution, independently created, remotely sensed, habitat map. This procedure revealed that : (1) spatial factors at 10 to 100-m scale explained up to 71% of variability in juvenile species richness, (2) a small improvement (75%) was gained when a combination of environmental variables at different spatial and temporal scales was used and (3) the coupling of remotely sensed data, geographical information system tools and point-based ecological data showed that the highest species richness and abundance were predicted along a narrow margin overlapping the coral reef flat and adjacent seagrass beds. Spatially explicit models of species distribution may be relevant for the management of reef communities when strong relationships exist between faunistic and environmental variables and when models are built at appropriate scales.

  18. Volatile Abundance and Distribution in the Tempel 1 Ejecta Cloud

    NASA Astrophysics Data System (ADS)

    Moretto, Mark J.; Feaga, Lori M.; A'Hearn, Michael F.; Protopapa, Silvia; Sunshine, Jessica M.; Farnham, Tony L.

    2015-11-01

    On 4 Jul 2005 the Deep Impact Impactor Spacecraft collided with comet Tempel 1, creating an ejecta cloud that was observed by the Deep Impact Flyby Spacecraft (DIF) as well as Earth and space based observatories. The High Resolution Instrument Infrared Spectrometer (HRI-IR) onboard DIF acquired several spectral scans of this ejecta cloud in the minutes immediately after impact. HRI-IR has a spectral range of 1.05 to 4.85 microns. This spectral range allows for water vapor, water ice, organics, CO2 and CO to be detected simultaneously, if each species is sufficiently abundant.We present an analysis of the quantity and spatial distribution of water, organics and CO2 in the Tempel 1 ejecta cloud. Variation in abundance, either absolute or relative, will be compared to morphological features in the ejecta cloud present in visible images acquired by the Medium and High Resolution Imagers onboard DIF. The composition of the ejecta cloud will also be compared with that of the 2 Jul 2005 natural outburst and quiescent activity levels at Tempel 1.

  19. Fruit removal rate depends on neighborhood fruit density, frugivore abundance, and spatial context.

    PubMed

    Smith, Adam D; McWilliams, Scott R

    2014-03-01

    Fleshy-fruited plants depend fundamentally on interactions with frugivores for effective seed dispersal. Recent models of frugivory within spatially explicit networks make two general predictions regarding these interactions: rate of fruit removal increases (i.e., is facilitated) as densities of conspecific neighborhood fruits increase, and fruit removal rate varies positively with frugivore abundance. We conducted a field experiment that constitutes the first empirical and simultaneous test of these two primary predictions. We manipulated neighborhood abundances of arrowwood (Viburnum recognitum and Viburnum dentatum) fruits in southern New England's maritime shrub community and monitored removal rates by autumn-migrating birds. Focal arrowwood plants in neighborhoods with high conspecific fruit density sustained moderately decreased fruit removal rates (i.e., competition) relative to those in low-density neighborhoods, a result that agrees with most field research to date but contrasts with theoretical expectation. We suggest the spatial contexts that favor competition (i.e., high-abundance neighborhoods and highly aggregated landscapes) are considerably more common than the relatively uniform, low-aggregation fruiting landscapes that promote facilitation. Patterns of arrowwood removal by avian frugivores generally varied positively with, and apparently in response to, seasonal changes in migratory frugivore abundance. However, we suggest that dense stands of arrowwood concentrated frugivore activity at the neighborhood scale, thus counteracting geographic patterns of frugivore abundance. Our results underscore the importance of considering spatial context (e.g., fruit distribution and aggregation, frugivory hubs) in plant-avian frugivore interactions.

  20. Spatial Distributions of Young Stars

    NASA Astrophysics Data System (ADS)

    Kraus, Adam L.; Hillenbrand, Lynne A.

    2008-10-01

    We analyze the spatial distribution of young stars in Taurus-Auriga and Upper Sco, as determined from the two-point correlation function (i.e., the mean surface density of neighbors). The corresponding power-law fits allow us to determine the fractal dimensions of each association's spatial distribution, measure the stellar velocity dispersions, and distinguish between the bound binary population and chance alignments of members. We find that the fractal dimension of Taurus is D ~ 1.05, consistent with its filamentary structure. The fractal dimension of Upper Sco may be even shallower (D ~ 0.7), but this fit is uncertain due to the limited area and possible spatially variable incompleteness. We also find that random stellar motions have erased all primordial structure on scales of lsim0.07° in Taurus and lsim1.7° in Upper Sco; given ages of ~1 and ~5 Myr, the corresponding internal velocity dispersions are ~0.2 and ~1.0 km s-1, respectively. Finally, we find that binaries can be distinguished from chance alignments at separations of lsim120'' (17,000 AU) in Taurus and lsim75'' (11,000 AU) in Upper Sco. The binary populations in these associations that we previously studied, spanning separations of 3''-30'', is dominated by binary systems. However, the few lowest mass pairs (Mprim <~ 0.3 M⊙) might be chance alignments.

  1. Vertical stratification in arthropod spatial distribution research.

    PubMed

    Marler, Thomas E

    2013-11-01

    Spatial heterogeneity within individual host trees is often overlooked in surveys of phytophagous arthropod abundance and distribution. The armored scale Aulacaspis yasumatsui is controlled by the predator Rhyzobius lophanthae to a greater degree on leaves at 75-cm height than on leaves at ground level within its host tree Cycas micronesica. The direct influence of elevation on the predator indirectly generates vertical heterogeneity of the scale insect. Arthropod sampling schemes that fail to include all strata within the vertical profile of the host tree species may generate misleading outcomes. Results indicate that sub-meter increments can reveal significant differences in vertical distribution of phytophagous insects, and that inclusion of observations on other organisms that interact with the target arthropod may illuminate determinants of vertical heterogeneity.

  2. Accounting for dispersal and biotic interactions to disentangle the drivers of species distributions and their abundances

    PubMed Central

    Boulangeat, Isabelle; Gravel, Dominique; Thuiller, Wilfried

    2014-01-01

    Although abiotic factors, together with dispersal and biotic interactions, are often suggested to explain the distribution of species and their abundances, species distribution models usually focus on abiotic factors only. We propose an integrative framework linking ecological theory, empirical data and statistical models to understand the distribution of species and their abundances together with the underlying community assembly dynamics. We illustrate our approach with 21 plant species in the French Alps. We show that a spatially nested modelling framework significantly improves the model’s performance and that the spatial variations of species presence–absence and abundances are predominantly explained by different factors. We also show that incorporating abiotic, dispersal and biotic factors into the same model bring new insights to our understanding of community assembly. This approach, at the crossroads between community ecology and biogeography, is a promising avenue for a better understanding of species co-existence and biodiversity distribution. PMID:22462813

  3. Trends in aerosol abundances and distributions

    NASA Technical Reports Server (NTRS)

    Turco, R. P.; Mccormick, M. P.; Clancy, R. T.; Curran, R.; Deluisi, J.; Hamill, P.; Kent, G.; Rosen, J. M.; Toon, O. B.; Yue, G.

    1989-01-01

    The properties of aerosols that reside in the upper atmosphere are described. Special emphasis is given to the influence these aerosols have on ozone observation systems, mainly through radiative effects, and on ambient ozone concentrations, mainly through chemical effects. It has long been appreciated that stratospheric particles can interfere with the remote sensing of ozone distribution. The mechanism and magnitude of this interference are evaluated. Separate sections deal with the optical properties of upper atmospheric aerosols, long-term trends in stratospheric aerosols, perturbations of the stratospheric aerosol layer by volcanic eruptions, and estimates of the impacts that such particles have on remotely measured ozone concentrations. Another section is devoted to a discussion of the polar stratospheric clouds (PSC's). These unique clouds, recently discovered by satellite observation, are now thought to be intimately connected with the Antarctic ozone hole. Accordingly, interest in PSC's has grown considerably in recent years. This chapter describes what we know about the morphology, physical chemistry, and microphysics of PSC's.

  4. The abundance and distribution of water vapor in Jupiter's atmosphere

    NASA Technical Reports Server (NTRS)

    Bjoraker, Gordon L.; Larson, Harold P.; Kunde, Virgil G.

    1986-01-01

    The atmospheric transmission window between 1800 and 2250 cm(-1) in Jupiter's atmosphere was observed from the Kuiper Airborne Observatory (KAO) and by the infrared spectrometer (IRIS) on Voyager. The vertical distribution of H2O was derived for the 1 to 6 bar portion of Jupiter's troposphere. The spatial variation of H2O was measured using IRIS spectra of the Hot Spots in the North and South Equatorial Belts, the Equatorial Zone, and for an average of the North and South Tropical Zones. The H2O column abundance above the 4 bar level is the same in the zones as in the SEB Hot Spots, about 20 cm-amagat. The NEB Hot Spots are desiccated by a factor of 3 with respect to the rest of Jupiter. For an average between -40 to 40 deg latitude, the H2O mole fraction, qH2O, is saturated for P less than 2 bars, qH2O = 4x10 to the -6 in the 2 to 4 bar range and it increases to 3x10 to the -5 at 6 bars. A similar vertical profile applies to the spatially resolved zone and belt spectra, except that H2O falls off more rapidly at P less than 4 bars in the NEB Hot Spots. The massive H2O cloud at 5 bars, T = 273 K, proposed in solar composition models, is inconsistent with the observations. Instead, a thin H2O ice cloud would form at 2 bars, T = 200 K. The O/H ratio in Jupiter, inferred from H2O measurements in both belts and zones at 6 bars, is depleted by a factor of 50 with respect to the Sun. The implications for the origin of Jupiter of globally depleted O/H, but enhanced C/H and N/H, are discussed.

  5. The abundance and distribution of water vapor in Jupiter's atmosphere

    NASA Technical Reports Server (NTRS)

    Bjoraker, Gordon L.; Larson, Harold P.; Kunde, Virgil G.

    1986-01-01

    The atmospheric transmission window between 1800 and 2250/cm in Jupiter's atmosphere was observed from the Kuiper Airborne Observatory and by the IR spectrometer (IRIS) on Voyager. The vertical distribution of H2O was derived for the 1-6 bar portion of Jupiter's troposphere. The spatial variation of H2O was measured using IRIS spectra of the Hot Spots in the North and South Equatorial Belts (NEB, SEB) and the Equatorial Zone and for an average of the North and South Tropical Zones. The H2O column abundance above the 4 bar level is the same in the zones as in the SEB Hot Spots, about 20 cm amagats. The NEB Hot Spots are desiccated by a factor of 3 with respect to the rest of Jupiter. For an average between -40 and +40 deg latitude, the H2O mole fraction, qH2O, is saturated for P less than 2 bars, qH2O = 4 millionths in the 2-4 bar range, and it increases to 3/100,000 at 6 bars. A similar vertical profile applies to the spatially resolved zone and belt spectra, except that H2O falls off more rapidly at P less than 4 bars in the NEB Hot Spots. A massive H2O cloud at 5 bars, T = 273 K is inconsistent with the observations. Instead, a thin H2O ice cloud would form at 2 bars, T = 200 K. The O/H ratio in Jupiter, inferred from H2O measurements in both belts and zones at 6 bars, is depleted by a factor of 50 with respect to the sun.

  6. Multiple peaks of species abundance distributions induced by sparse interactions

    NASA Astrophysics Data System (ADS)

    Obuchi, Tomoyuki; Kabashima, Yoshiyuki; Tokita, Kei

    2016-08-01

    We investigate the replicator dynamics with "sparse" symmetric interactions which represent specialist-specialist interactions in ecological communities. By considering a large self-interaction u , we conduct a perturbative expansion which manifests that the nature of the interactions has a direct impact on the species abundance distribution. The central results are all species coexistence in a realistic range of the model parameters and that a certain discrete nature of the interactions induces multiple peaks in the species abundance distribution, providing the possibility of theoretically explaining multiple peaks observed in various field studies. To get more quantitative information, we also construct a non-perturbative theory which becomes exact on tree-like networks if all the species coexist, providing exact critical values of u below which extinct species emerge. Numerical simulations in various different situations are conducted and they clarify the robustness of the presented mechanism of all species coexistence and multiple peaks in the species abundance distributions.

  7. A landscape analysis of cougar distribution and abundance in Montana, USA.

    PubMed

    Riley, S J; Malecki, R A

    2001-09-01

    Recent growth in the distribution and abundance of cougars (Puma concolor) throughout western North America has created opportunities, challenges, and problems for wildlife managers and raises questions about what factors affect cougar populations. We present an analysis of factors thought to affect cougar distribution and abundance across the broad geographical scales on which most population management decisions are made. Our objectives were to: (1) identify and evaluate landscape parameters that can be used to predict the capability of habitats to support cougars, and (2) evaluate factors that may account for the recent expansion in cougar numbers. Habitat values based on terrain ruggedness and forested cover explained 73% of the variation in a cougar abundance index. Indices of cougar abundance also were spatially and temporally correlated with ungulate abundance. An increase in the number and total biomass of ungulate prey species is hypothesized to account for recent increases in cougars. Cougar populations in Montana are coping with land development by humans when other components of habitat and prey populations are sufficient. Our analysis provides a better understanding of what may have influenced recent growth in cougar distribution and abundance in Montana and, when combined with insights about stakeholder acceptance capacity, offers a basis for cougar management at broad scales. Long-term conservation of cougars necessitates a better understanding of ecosystem functions that affect prey distribution and abundance, more accurate estimates of cougar populations, and management abilities to integrate these components with human values.

  8. Distribution and abundance of fish larvae in the northern Ionian Sea (Eastern Mediterranean)

    NASA Astrophysics Data System (ADS)

    Granata, Antonia; Cubeta, Annaluce; Minutoli, Roberta; Bergamasco, Alessandro; Guglielmo, Letterio

    2011-09-01

    The purpose of this paper was to study the spatial distribution, abundance and composition of fish larvae in the northern Ionian Sea. Samples were collected to the 600 m depth with an electronic multinet BIONESS during the "INTERREG Italia-Grecia" oceanographic cruise carried out in March 2000 off the Apulian Italian coast. A total of 46 species of teleost early stages were collected, belonging to 38 genera and 22 families. Over 52% of the larvae identified were mesopelagic species, almost 27% were demersal and about 21% pelagic. A total of 307 myctophids, 69 clupeids and 61 gadid post-larvae dominated the community. Benthosema glaciale (mean 6.1 mm SL) was the most abundant species (21.6%), the most frequent in the samples (28.8%), and dominant in the whole study area (mean 1.4 ind/100 m3). Particular attention was given to the horizontal and vertical distribution and abundance of the three dominant post-larval species: Benthosema glaciale, Sprattus sprattus sprattus and Notoscopelus elongatus. The Pearson coefficient ( R = 0.734) showed a high correlation between total zooplankton and fish larval assemblages in terms of spatial distribution abundance values. Regarding the vertical distribution of fish larvae, Sorensen's index ( S = 0.69) showed that fish larvae and total zooplankton abundance peaks co-occurred along the water column.

  9. Relating species abundance distributions to species-area curves in two Mediterranean-type shrublands

    USGS Publications Warehouse

    Keeley, Jon E.

    2003-01-01

    Based on both theoretical and empirical studies there is evidence that different species abundance distributions underlie different species-area relationships. Here I show that Australian and Californian shrubland communities (at the scale from 1 to 1000 m2) exhibit different species-area relationships and different species abundance patterns. The species-area relationship in Australian heathlands best fits an exponential model and species abundance (based on both density and cover) follows a narrow log normal distribution. In contrast, the species-area relationship in Californian shrublands is best fit with the power model and, although species abundance appears to fit a log normal distribution, the distribution is much broader than in Australian heathlands. I hypothesize that the primary driver of these differences is the abundance of small-stature annual species in California and the lack of annuals in Australian heathlands. Species-area is best fit by an exponential model in Australian heathlands because the bulk of the species are common and thus the species-area curves initially rise rapidly between 1 and 100 m2. Annuals in Californian shrublands generate very broad species abundance distributions with many uncommon or rare species. The power function is a better model in these communities because richness increases slowly from 1 to 100 m2 but more rapidly between 100 and 1000 m2due to the abundance of rare or uncommon species that are more likely to be encountered at coarser spatial scales. The implications of this study are that both the exponential and power function models are legitimate representations of species-area relationships in different plant communities. Also, structural differences in community organization, arising from different species abundance distributions, may lead to different species-area curves, and this may be tied to patterns of life form distribution.

  10. Environmental correlates of species rank - abundance distributions in global drylands.

    PubMed

    Ulrich, Werner; Soliveres, Santiago; Thomas, Andrew D; Dougill, Andrew J; Maestre, Fernando T

    2016-06-01

    Theoretical models predict lognormal species abundance distributions (SADs) in stable and productive environments, with log-series SADs in less stable, dispersal driven communities. We studied patterns of relative species abundances of perennial vascular plants in global dryland communities to: i) assess the influence of climatic and soil characteristics on the observed SADs, ii) infer how environmental variability influences relative abundances, and iii) evaluate how colonisation dynamics and environmental filters shape abundance distributions. We fitted lognormal and log-series SADs to 91 sites containing at least 15 species of perennial vascular plants. The dependence of species relative abundances on soil and climate variables was assessed using general linear models. Irrespective of habitat type and latitude, the majority of the SADs (70.3%) were best described by a lognormal distribution. Lognormal SADs were associated with low annual precipitation, higher aridity, high soil carbon content, and higher variability of climate variables and soil nitrate. Our results do not corroborate models predicting the prevalence of log-series SADs in dryland communities. As lognormal SADs were particularly associated with sites with drier conditions and a higher environmental variability, we reject models linking lognormality to environmental stability and high productivity conditions. Instead our results point to the prevalence of lognormal SADs in heterogeneous environments, allowing for more evenly distributed plant communities, or in stressful ecosystems, which are generally shaped by strong habitat filters and limited colonisation. This suggests that drylands may be resilient to environmental changes because the many species with intermediate relative abundances could take over ecosystem functioning if the environment becomes suboptimal for dominant species.

  11. Spatial and temporal abundance patterns of oceanic chaetognaths in the western North Atlantic—I. Hydrographic and seasonal abundance patterns

    NASA Astrophysics Data System (ADS)

    Cheney, Jerry

    1985-09-01

    Chaetognath abundance was measured from 38 MOCNESS tows collected in the western North Atlantic from August 1975 to November 1977. Twenty-one species were identified from 18 slope water (SW), 18 northern Sargasso Sea (NSS) and two Gulf Stream (GS) tows. Sagitta elegans, S. hispida and S. megalophthalma were collected in only one or two tows. Eukrohnia bathypelagica, E. fowleri, E. hamata, Sagitta helenae, S. macrocephala, S. maxima and S. tasmanica are significantly more abundant in the SW than in the NSS. Krohnitta subtilis, Pterosagitta draco, Sagitta bipunctata, S. decipiens, S. hexaptera, S. lyra, S. minima, S. planctonis and S. serratodentata are significantly more abundant in the NSS. Krohnitta pacifica and Sagitta enflata show no significant abundance differences between the SW and NSS. Most species show at least an order of magnitude abundance difference between the SW and NSS, with intermediate GS abundances. A simple mixing model and previous reports of chaetognath distributions in the North Atlantic indicate that most species have expatriate populations in either the SW or NSS or in both regions. Increased temperature and food abundance probably limit SW species from the NSS, while decreased temperature and increased predator abundance probably limit NSS species from the SW. Spring abundance peaks were observed for many species in the NSS, but no seasonal peaks were detected for species in the SW. The spring abundance peaks in the NSS are probably due to increased food abundance, although temperature could not be ruled out as an important factor.

  12. Abundance and distribution of water vapor in Jupiter's atmosphere

    SciTech Connect

    Bjoraker, G.L.; Larson, H.P.; Kunde, V.G.

    1986-09-01

    The atmospheric transmission window between 1800 and 2250 cm(-1) in Jupiter's atmosphere was observed from the Kuiper Airborne Observatory (KAO) and by the infrared spectrometer (IRIS) on Voyager. The vertical distribution of H/sub 2/O was derived for the 1 to 6 bar portion of Jupiter's troposphere. The spatial variation of H/sub 2/O was measured using IRIS spectra of the Hot Spots in the North and South Equatorial Belts, the Equatorial Zone, and for an average of the North and South Tropical Zones. The H/sub 2/O column abundance above the 4 bar level is the same in the zones as in the SEB Hot Spots, about 20 cm-amagat. The NEB Hot Spots are desiccated by a factor of 3 with respect to the rest of Jupiter. For an average between -40 to 40 deg latitude, the H/sub 2/O mole fraction, qH/sub 2/O, is saturated for P less than 2 bars, qH/sub 2/O = 4x10 to the -6 in the 2 to 4 bar range and it increases to 3x10 to the -5 at 6 bars. A similar vertical profile applies to the spatially resolved zone and belt spectra, except that H/sub 2/O falls off more rapidly at P less than 4 bars in the NEB Hot Spots. The massive H/sub 2/O cloud at 5 bars, T = 273 K, proposed in solar composition models, is inconsistent with the observations. Instead, a thin H/sub 2/O ice cloud would form at 2 bars, T = 200 K. The O/H ratio in Jupiter, inferred from H/sub 2/O measurements in both belts and zones at 6 bars, is depleted by a factor of 50 with respect to the Sun. The implications for the origin of Jupiter of globally depleted O/H, but enhanced C/H and N/H, are discussed.

  13. Spatial Distribution of Large Cloud Drops

    NASA Technical Reports Server (NTRS)

    Marshak, Alexander; Knyazikhin, Yuri; Larsen, Michael; Wiscombe, Warren

    2004-01-01

    The analysis of aircraft measurements of individual drop sizes in clouds suggests that for sufficiently small volumes the mean number of cloud drops with a given radius is proportional to volume powered by a drop-size dependent exponent. For abundant small drops present, the exponent is 1 as assumed in conventional approach. However, for rarer large drops, the exponents fall below unity. We show striking examples of the spatial distribution of large cloud drops using models that simulate the observed power laws. In contrast to currently used models that assume homogeneity and therefore a Poisson distribution of cloud drops, these models show strong drop clustering, the more so the larger the drops. The degree of clustering is determined by the observed exponents. The strong clustering of large drops arises naturally from the observed power-law statistics. This clustering has vital consequences for rain physics explaining how rain can form so fast and also helps explain why remotely sensed cloud drop size is generally biased.

  14. Do abundance distributions and species aggregation correctly predict macroecological biodiversity patterns in tropical forests?

    PubMed Central

    Wiegand, Thorsten; Lehmann, Sebastian; Huth, Andreas; Fortin, Marie‐Josée

    2016-01-01

    Abstract Aim It has been recently suggested that different ‘unified theories of biodiversity and biogeography’ can be characterized by three common ‘minimal sufficient rules’: (1) species abundance distributions follow a hollow curve, (2) species show intraspecific aggregation, and (3) species are independently placed with respect to other species. Here, we translate these qualitative rules into a quantitative framework and assess if these minimal rules are indeed sufficient to predict multiple macroecological biodiversity patterns simultaneously. Location Tropical forest plots in Barro Colorado Island (BCI), Panama, and in Sinharaja, Sri Lanka. Methods We assess the predictive power of the three rules using dynamic and spatial simulation models in combination with census data from the two forest plots. We use two different versions of the model: (1) a neutral model and (2) an extended model that allowed for species differences in dispersal distances. In a first step we derive model parameterizations that correctly represent the three minimal rules (i.e. the model quantitatively matches the observed species abundance distribution and the distribution of intraspecific aggregation). In a second step we applied the parameterized models to predict four additional spatial biodiversity patterns. Results Species‐specific dispersal was needed to quantitatively fulfil the three minimal rules. The model with species‐specific dispersal correctly predicted the species–area relationship, but failed to predict the distance decay, the relationship between species abundances and aggregations, and the distribution of a spatial co‐occurrence index of all abundant species pairs. These results were consistent over the two forest plots. Main conclusions The three ‘minimal sufficient’ rules only provide an incomplete approximation of the stochastic spatial geometry of biodiversity in tropical forests. The assumption of independent interspecific placements is most

  15. Assessing introduction risk using species' rank-abundance distributions.

    PubMed

    Chan, Farrah T; Bradie, Johanna; Briski, Elizabeta; Bailey, Sarah A; Simard, Nathalie; MacIsaac, Hugh J

    2015-01-22

    Mixed-species assemblages are often unintentionally introduced into new ecosystems. Analysing how assemblage structure varies during transport may provide insights into how introduction risk changes before propagules are released. Characterization of introduction risk is typically based on assessments of colonization pressure (CP, the number of species transported) and total propagule pressure (total PP, the total abundance of propagules released) associated with an invasion vector. Generally, invasion potential following introduction increases with greater CP or total PP. Here, we extend these assessments using rank-abundance distributions to examine how CP : total PP relationships change temporally in ballast water of ocean-going ships. Rank-abundance distributions and CP : total PP patterns varied widely between trans-Atlantic and trans-Pacific voyages, with the latter appearing to pose a much lower risk than the former. Responses also differed by taxonomic group, with invertebrates experiencing losses mainly in total PP, while diatoms and dinoflagellates sustained losses mainly in CP. In certain cases, open-ocean ballast water exchange appeared to increase introduction risk by uptake of new species or supplementation of existing ones. Our study demonstrates that rank-abundance distributions provide new insights into the utility of CP and PP in characterizing introduction risk.

  16. Spatial paradigms of lotic diatom distribution: A landscape ecology perspective

    USGS Publications Warehouse

    Passy, S.I.

    2001-01-01

    Spatial distributional patterns of benthic diatoms and their relation to current velocity were investigated in an unshaded cobble-bottom reach of White Creek (Washington County, NY). On 27 August 1999, diatoms were sampled and current velocity and depth were measured on a regular square sampling grid with a grain size of 0.01 m2, interval of 0.5 m, and extent of 16 m2. The relative abundance of the 18 common diatom species enumerated in the 81 samples was subjected to detrended correspondence analysis (DCA). The first axis (DCA1) explained 51% of the variance in diatom data and separated the samples according to current regimes. The spatial autocorrelation of DCA1 sample scores in deposition and erosion regions of White Creek was determined by Moran's I statistic to indicate patch size. In White Creek the patch length of all diatom communities was more than 3.1 m, whereas the patch width was 1 m in the deposition region and 0.5 m in the erosion region. There were 5 dominant diatom taxa, Achnanthes minutissima Ku??tz. et vars, Fragilaria capucina Dezmazie??res et vars, F. crotonensis Kitt., Diatoma vulgaris Bory, and Synedra ulna (Nitz.) Ehr. et vars. The patch length of the dominant species varied from 1 to more than 4.1 m, whereas the patch width, if defined, was 0.5 m. Achnanthes minutissima and F. capucina, the two diatom species with the highest relative abundance, displayed spatially structured patches of low abundance and comparatively random patches of high abundance, suggesting broad scale abiotic control of species performance in low abundance regions and finer scale biotic control of high abundance areas. Another objective of this study was to test the hypothesis that higher current velocities, which generally impede immigration, would increase randomness and complexity (i.e. homogeneity of diatom distributional patterns). The spatial complexity in low versus high velocity transects was determined by calculating the respective fractal dimension (D) of DCA

  17. Viral abundance and distribution in mesopelagic and bathypelagic waters of the Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Magagnini, Mirko; Corinaldesi, Cinzia; Monticelli, Luis S.; De Domenico, Emilio; Danovaro, Roberto

    2007-08-01

    Despite the fact that marine viruses have been increasingly investigated in the last decade, knowledge on virus abundance, biomass and distribution in mesopelagic and bathypelagic waters is limited. We report here the results of a large-spatial-scale study (covering more than 3000 km) on the virioplankton distribution in epi-, meso- and bathypelagic waters in 19 areas of the Mediterranean Sea, from the Alboran Sea and Western Mediterranean, to the Tyrrhenian Sea, Sicily Channel and Ionian Sea. Integrated viral abundance in epipelagic waters was significantly higher than in deep-sea waters (on average, 2.4 vs. 0.5×10 12 viruses m -3). However, abundance of viruses in the deep-Mediterranean waters was the highest reported so far for deep seas worldwide (7.0 and 3.1×10 11 viruses m -3 in mesopelagic and bathypelagic waters, respectively) and their biomass accounted for 13-18% of total prokaryotic C biomass. The significant relationship between viral abundance and prokaryotic abundance and production in deep waters suggests that also deep-sea viruses are closely dependent on the abundance and metabolism of their hosts. Moreover, virus to prokaryote (and nucleoid-containing cell (NuCC)) abundance ratio increased with increasing depths suggesting that deep waters may represent optimal environments for viral survival or proliferation. Overall, our results indicate that deep waters may represent a significant reservoir of viruses and open new perspectives for future investigations of viral impact on the functioning of meso-bathypelagic ecosystems.

  18. Global Distribution of Microbial Abundance and Biomass in Subseafloor Sediment

    NASA Astrophysics Data System (ADS)

    Kallmeyer, J.; Pockalny, R. A.; Adhikari, R. R.; Smith, D. C.; D'Hondt, S. L.

    2012-12-01

    Previously published cell counts were mostly from ocean margins and the eastern equatorial Pacific. Cell counts from these environments are generally similar from site to site and decrease logarithmically with sediment depth, although there can be sharp peaks of high cell densities in zones of anaerobic methane-oxidation. Recent counts from the South Pacific Gyre and the North Pacific Gyre are several orders of magnitude lower and show a more rapid decrease with depth than all previously published datasets. With these new data available, total microbial cell abundance in subseafloor sediment varies between sites by ca. five orders of magnitude. The differences between cell counts from ocean margins and upwelling areas and cell counts from oceanic gyres raise three questions. First, how does the abundance of microbes in subseafloor sediment vary throughout the world ocean? Second, what property or properties are likely to control that variation? Third, how does this variation affect estimates of total subseafloor sedimentary biomass and Earth's total biomass? To address these questions, we compiled our cell counts from the South Pacific Gyre, the North Pacific Gyre and the eastern equatorial Pacific Ocean with previously published counts and parameterized the cell distribution at each site and determined two parameters, (i) cell concentration at 1 mbsf and (ii) rate of decrease in cell counts with depth. Both parameters are strongly correlated with mean sedimentation rate and distance to shore. Based on these correlations, we estimate global subseafloor sedimentary microbial abundance to be 2.9*1029 cells (corresponding to 4.1 Pg C and ~0.6% of Earth's total living biomass). This estimate of subseafloor sedimentary microbial abundance is roughly equal to previous estimates of total microbial abundance in seawater and total microbial abundance in soil. It is much lower than previous estimates of subseafloor sedimentary microbial abundance. In consequence, we estimate

  19. Modeled distribution and abundance of a pelagic seabird reveal trends in relation to fisheries

    USGS Publications Warehouse

    Renner, Martin; Parrish, Julia K.; Piatt, John F.; Kuletz, Kathy J.; Edwards, Ann E.; Hunt, George L.

    2013-01-01

    The northern fulmar Fulmarus glacialis is one of the most visible and widespread seabirds in the eastern Bering Sea and Aleutian Islands. However, relatively little is known about its abundance, trends, or the factors that shape its distribution. We used a long-term pelagic dataset to model changes in fulmar at-sea distribution and abundance since the mid-1970s. We used an ensemble model, based on a weighted average of generalized additive model (GAM), multivariate adaptive regression splines (MARS), and random forest models to estimate the pelagic distribution and density of fulmars in the waters of the Aleutian Archipelago and Bering Sea. The most important predictor variables were colony effect, sea surface temperature, distribution of fisheries, location, and primary productivity. We calculated a time series from the ratio of observed to predicted values and found that fulmar at-sea abundance declined from the 1970s to the 2000s at a rate of 0.83% (± 0.39% SE) per annum. Interpolating fulmar densities on a spatial grid through time, we found that the center of fulmar distribution in the Bering Sea has shifted north, coinciding with a northward shift in fish catches and a warming ocean. Our study shows that fisheries are an important, but not the only factor, shaping fulmar distribution and abundance trends in the eastern Bering Sea and Aleutian Islands.

  20. Herbivory: effects on plant abundance, distribution and population growth

    PubMed Central

    Maron, John L; Crone, Elizabeth

    2006-01-01

    Plants are attacked by many different consumers. A critical question is how often, and under what conditions, common reductions in growth, fecundity or even survival that occur due to herbivory translate to meaningful impacts on abundance, distribution or dynamics of plant populations. Here, we review population-level studies of the effects of consumers on plant dynamics and evaluate: (i) whether particular consumers have predictably more or less influence on plant abundance, (ii) whether particular plant life-history types are predictably more vulnerable to herbivory at the population level, (iii) whether the strength of plant–consumer interactions shifts predictably across environmental gradients and (iv) the role of consumers in influencing plant distributional limits. Existing studies demonstrate numerous examples of consumers limiting local plant abundance and distribution. We found larger effects of consumers on grassland than woodland forbs, stronger effects of herbivory in areas with high versus low disturbance, but no systematic or unambiguous differences in the impact of consumers based on plant life-history or herbivore feeding mode. However, our ability to evaluate these and other patterns is limited by the small (but growing) number of studies in this area. As an impetus for further study, we review strengths and challenges of population-level studies, such as interpreting net impacts of consumers in the presence of density dependence and seed bank dynamics. PMID:17002942

  1. [Spatial distribution of macroinvertebrates in Xiangxi River].

    PubMed

    Jiang, Wan-xiang; Cai, Qing-hua; Tang, Tao; Wu, Nai-cheng; Fu, Xiao-cheng; Li, Feng-qing; Liu, Rui-qiu

    2008-11-01

    An investigation was made from July 2005 to June 2006 to understand the spatial distribution of macroinvertebrates in Xiangxi River, the largest tributary in Hubei portion of Three Gorges Reservoir. The results showed that Ephemeroptera baetis spp., Ephemeroptera epeorus spp., and Plecoptera nemoura spp. were the dominant taxa. There existed greater differences in the habitat characters and in the community structure of macroinvertebrates among the major tributaries of Xiangxi River, and the relative abundance of functional feeding groups could reflect the characters of different habitats. A comparison of the diversity of dominant taxa and their tolerance towards pollution among the major tributaries showed that Jiuchong River had the best habitat, followed by the main stream of Xiangxi River, and Gaolan River and Gufu River. Canonical correspondence analysis showed that the NH4+ -N concentration in the main stream of Xiangxi River, the pH, turbidity, water depth, SiO2, conductance, and alkalinity in Jiuchong River, the turbidity in Gaolan River, and the NH4+ -N and NO3- -N concentrations in Gufu River had significant impact on the community structure of macroinvertebrates.

  2. Does interference competition with wolves limit the distribution and abundance of coyotes?

    PubMed

    Berger, Kim Murray; Gese, Eric M

    2007-11-01

    Interference competition with wolves Canis lupus is hypothesized to limit the distribution and abundance of coyotes Canis latrans, and the extirpation of wolves is often invoked to explain the expansion in coyote range throughout much of North America. We used spatial, seasonal and temporal heterogeneity in wolf distribution and abundance to test the hypothesis that interference competition with wolves limits the distribution and abundance of coyotes. From August 2001 to August 2004, we gathered data on cause-specific mortality and survival rates of coyotes captured at wolf-free and wolf-abundant sites in Grand Teton National Park (GTNP), Wyoming, USA, to determine whether mortality due to wolves is sufficient to reduce coyote densities. We examined whether spatial segregation limits the local distribution of coyotes by evaluating home-range overlap between resident coyotes and wolves, and by contrasting dispersal rates of transient coyotes captured in wolf-free and wolf-abundant areas. Finally, we analysed data on population densities of both species at three study areas across the Greater Yellowstone Ecosystem (GYE) to determine whether an inverse relationship exists between coyote and wolf densities. Although coyotes were the numerically dominant predator, across the GYE, densities varied spatially and temporally in accordance with wolf abundance. Mean coyote densities were 33% lower at wolf-abundant sites in GTNP, and densities declined 39% in Yellowstone National Park following wolf reintroduction. A strong negative relationship between coyote and wolf densities (beta = -3.988, P < 0.005, r(2) = 0.54, n = 16), both within and across study sites, supports the hypothesis that competition with wolves limits coyote populations. Overall mortality of coyotes resulting from wolf predation was low, but wolves were responsible for 56% of transient coyote deaths (n = 5). In addition, dispersal rates of transient coyotes captured at wolf-abundant sites were 117% higher

  3. Oceanic heterotrophic dinoflagellates: distribution, abundance, and role as microzooplankton

    SciTech Connect

    Lessard, E.J.

    1984-01-01

    The primary objectives of this thesis were to determine the distribution and abundance of heterotrophic dinoflagellates across the Gulf Stream system off Cape Hatteras and to assess the potential grazing impact of these microheterotrophs in plankton communities. A list of species encountered in this study and their trophic status based on epifluorescence is presented, as well as observations on the presence of external or internal symbionts. The abundance of heterotrophic dinoflagellates across the Gulf Stream region off Cape Hatteras was determined from bimonthly net tow samples over a year and from whole water samples in March. Their average abundance was twice that of net ciliates in the net plankton and ten times that of ciliates in the nanoplankton. An isotope technique was developed to measure grazing rates of individual dinoflaggellates and other microzooplankton which cannot be separated in natural populations on the basis of size. /sup 3/H-thymidine and /sup 14/C-bicarbonate were used to label natural heterotrophic (bacteria and bacterivores) and autotrophic (phytoplankton and herbivores) food, respectively. Estimates of the grazing impact of heterotrophic kinoflagellates relative to other groups of heterotrophs on phytoplankton and bacteria were made by combining abundance data and clearance rates. Such calculations suggested that heterotrophic dinoflagellates may be an important group of grazers in oceanic waters.

  4. Distribution and abundance of pelagic tunicates in the North Yellow Sea

    NASA Astrophysics Data System (ADS)

    Franco, Pietro; Chen, Hongju; Liu, Guangxing

    2014-10-01

    In this paper, the distribution patterns and abundance of pelagic tunicates in the North Yellow Sea of China during the period 2006-2007 were analyzed. Zooplankton samples were obtained with vertical towing from bottom to surface using a WP2 plankton net (200 μm mesh size; mouth area: 0.25 m2). Five species belonging to two classes were identified: Oikopleura dioica, O. longicauda and Fritillaria borealis belonging to class Appendicularia; Salpa fusiformis and Doliolum denticulatum of class Thaliacea. O. dioica and O. longicauda were the dominant species, occurring in the samples of all four seasons, with different distribution patterns. Their maximum abundance were 1664.7 ind. m-3 (spring) and 1031.7 ind. m-3 (spring) respectively. Following Oikopleura spp. were D. denticulatum, which was found only in autumn with an average abundance of 149.6 ind. m-3, and S. fusiformis, which was detected all the year long except for autumn with low abundance (max. abundance 289.4 ind. m-3 in summer). Only a very small amount of F. borealis was detected in summer samples, with an average abundance of 2.7 ind. m-3. The relationship between tunicates abundances and the environmental factors was analyzed using the stepwise regression model for each species. The variation of appendicularian abundance showed a significant correlation with the surface water temperature and with the concentration of Chl- a. No relationship was found between tunicates abundance and salinity, likely due to the slight changes in surface salinity of the studied area during the four seasons. Salps abundance and that of doliolids were significantly correlated to bottom water temperature, indicating that these two species ( S. fusiformis and D. denticulatum) migrate vertically in the water column. In particular D. denticulatum, known to be a warm water species, showed not only an important correlation with water temperature, but also a spatial distribution connected to the warm currents in the North Yellow

  5. Spatial distribution of thermal energy in equilibrium.

    PubMed

    Bar-Sinai, Yohai; Bouchbinder, Eran

    2015-06-01

    The equipartition theorem states that in equilibrium, thermal energy is equally distributed among uncoupled degrees of freedom that appear quadratically in the system's Hamiltonian. However, for spatially coupled degrees of freedom, such as interacting particles, one may speculate that the spatial distribution of thermal energy may differ from the value predicted by equipartition, possibly quite substantially in strongly inhomogeneous or disordered systems. Here we show that for systems undergoing simple Gaussian fluctuations around an equilibrium state, the spatial distribution is universally bounded from above by 1/2k(B)T. We further show that in one-dimensional systems with short-range interactions, the thermal energy is equally partitioned even for coupled degrees of freedom in the thermodynamic limit and that in higher dimensions nontrivial spatial distributions emerge. Some implications are discussed.

  6. Spatial Mapping of Protein Abundances in the Mouse Brain by Voxelation Integrated with High-Throughput Liquid Chromatography - Mass Spectrometry

    SciTech Connect

    Petyuk, Vladislav A; Qian, Weijun; Chin, Mark H; Wang, Haixing H; Livesay, Eric A; Monroe, Matthew E; Adkins, Joshua N; Jaitly, Navdeep; Anderson, David J; Camp, David G; Smith, Desmond J; Smith, Richard D

    2007-01-25

    Temporally and spatially resolved mapping of protein abundance patterns within the mammalian brain is of significant interest for understanding brain function and molecular etiologies of neurodegenerative diseases; however, such imaging efforts have been greatly challenged by complexity of the proteome, throughput and sensitivity of applied analytical methodologies, and accurate quantitation of protein abundances across the brain. Here, we describe a methodology for comprehensive spatial proteome mapping that addresses these challenges by employing voxelation integrated with automated microscale sample processing, high-throughput LC system coupled with high resolution Fourier transform ion cyclotron mass spectrometer and a “universal” stable isotope labeled reference sample approach for robust quantitation. We applied this methodology as a proof-of-concept trial for the analysis of protein distribution within a single coronal slice of a C57BL/6J mouse brain. For relative quantitation of the protein abundances across the slice, an 18O-isotopically labeled reference sample, derived from a whole control coronal slice from another mouse, was spiked into each voxel sample and stable isotopic intensity ratios were used to obtain measures of relative protein abundances. In total, we generated maps of protein abundance patterns for 1,028 proteins. The significant agreement of the protein distributions with previously reported data supports the validity of this methodology, which opens new opportunities for studying the spatial brain proteome and its dynamics during the course of disease progression and other important biological and associated health aspects in a discovery-driven fashion.

  7. The spatial distribution of coronae on Venus

    NASA Technical Reports Server (NTRS)

    Squyres, S. W.; Schubert, G.; Bindschadler, D. L.; Janes, D. M.; Moersch, J. E.; Moore, W.; Olson, P.; Ratcliff, J. T.; Stofan, E. R.; Turcotte, D. L.

    1992-01-01

    Coronae on Venus are large, generally circular surface features that have distinctive tectonic, volcanic, and topographic expressions. They range in diameter from less than 200 km to at least 1000 km. Data from the Magellan spacecraft have now allowed complete global mapping of the spatial distribution of coronae on the planet. Unlike impact craters, which show a random (i.e., Poisson) spatial distribution, the distribution of coronae appears to be nonrandom. We investigate the distribution here in detail, and explore its implications in terms of mantle convection and surface modification processes.

  8. Non-Gaussian error distribution of 7Li abundance measurements

    NASA Astrophysics Data System (ADS)

    Crandall, Sara; Houston, Stephen; Ratra, Bharat

    2015-07-01

    We construct the error distribution of 7Li abundance measurements for 66 observations (with error bars) used by Spite et al. (2012) that give A(Li) = 2.21 ± 0.065 (median and 1σ symmetrized error). This error distribution is somewhat non-Gaussian, with larger probability in the tails than is predicted by a Gaussian distribution. The 95.4% confidence limits are 3.0σ in terms of the quoted errors. We fit the data to four commonly used distributions: Gaussian, Cauchy, Student’s t and double exponential with the center of the distribution found with both weighted mean and median statistics. It is reasonably well described by a widened n = 8 Student’s t distribution. Assuming Gaussianity, the observed A(Li) is 6.5σ away from that expected from standard Big Bang Nucleosynthesis (BBN) given the Planck observations. Accounting for the non-Gaussianity of the observed A(Li) error distribution reduces the discrepancy to 4.9σ, which is still significant.

  9. An extensive comparison of species-abundance distribution models

    PubMed Central

    Baldridge, Elita; Harris, David J.; Xiao, Xiao

    2016-01-01

    A number of different models have been proposed as descriptions of the species-abundance distribution (SAD). Most evaluations of these models use only one or two models, focus on only a single ecosystem or taxonomic group, or fail to use appropriate statistical methods. We use likelihood and AIC to compare the fit of four of the most widely used models to data on over 16,000 communities from a diverse array of taxonomic groups and ecosystems. Across all datasets combined the log-series, Poisson lognormal, and negative binomial all yield similar overall fits to the data. Therefore, when correcting for differences in the number of parameters the log-series generally provides the best fit to data. Within individual datasets some other distributions performed nearly as well as the log-series even after correcting for the number of parameters. The Zipf distribution is generally a poor characterization of the SAD. PMID:28028483

  10. Seasonal and Spatial Variability of Virioplanktonic Abundance in Haihe River, China

    PubMed Central

    Sun, Rui; Mao, Guannan; Yu, Hui; Wang, Yingying

    2013-01-01

    In order to understand the composition and dynamics of planktonic viruses and their relationship with environmental parameters in natural freshwater, flow cytometry was optimized with filtration/fixation/staining/dilution and then applied to the analysis of samples collected from 9 stations (covering urban, rural, and estuarial areas) along the Haihe River, China, over a one-year period of study. The total viral abundance exhibited an apparent peak in the spring. Spatially, the highest viral abundance was recorded in estuarial areas. The correlation analysis indicated that the bacteria in the Haihe River significantly influenced viral abundance. The relationship between abiotic variables and viral abundance remained the same as with bacterial abundance, indicating that environmental parameters could possibly influence viral abundance in virtue of their bacterial host cells. The influence of environmental factors on viral abundance differed in the three sampling areas, suggesting different drivers of viral abundance in different stretches of the river associated with their utilization and surroundings. PMID:23844363

  11. Efficient estimation of abundance for patchily distributed populations via two-phase, adaptive sampling.

    USGS Publications Warehouse

    Conroy, M.J.; Runge, J.P.; Barker, R.J.; Schofield, M.R.; Fonnesbeck, C.J.

    2008-01-01

    Many organisms are patchily distributed, with some patches occupied at high density, others at lower densities, and others not occupied. Estimation of overall abundance can be difficult and is inefficient via intensive approaches such as capture-mark-recapture (CMR) or distance sampling. We propose a two-phase sampling scheme and model in a Bayesian framework to estimate abundance for patchily distributed populations. In the first phase, occupancy is estimated by binomial detection samples taken on all selected sites, where selection may be of all sites available, or a random sample of sites. Detection can be by visual surveys, detection of sign, physical captures, or other approach. At the second phase, if a detection threshold is achieved, CMR or other intensive sampling is conducted via standard procedures (grids or webs) to estimate abundance. Detection and CMR data are then used in a joint likelihood to model probability of detection in the occupancy sample via an abundance-detection model. CMR modeling is used to estimate abundance for the abundance-detection relationship, which in turn is used to predict abundance at the remaining sites, where only detection data are collected. We present a full Bayesian modeling treatment of this problem, in which posterior inference on abundance and other parameters (detection, capture probability) is obtained under a variety of assumptions about spatial and individual sources of heterogeneity. We apply the approach to abundance estimation for two species of voles (Microtus spp.) in Montana, USA. We also use a simulation study to evaluate the frequentist properties of our procedure given known patterns in abundance and detection among sites as well as design criteria. For most population characteristics and designs considered, bias and mean-square error (MSE) were low, and coverage of true parameter values by Bayesian credibility intervals was near nominal. Our two-phase, adaptive approach allows efficient estimation of

  12. Computing spatial information from Fourier coefficient distributions.

    PubMed

    Heinz, William F; Werbin, Jeffrey L; Lattman, Eaton; Hoh, Jan H

    2011-05-01

    The spatial relationships between molecules can be quantified in terms of information. In the case of membranes, the spatial organization of molecules in a bilayer is closely related to biophysically and biologically important properties. Here, we present an approach to computing spatial information based on Fourier coefficient distributions. The Fourier transform (FT) of an image contains a complete description of the image, and the values of the FT coefficients are uniquely associated with that image. For an image where the distribution of pixels is uncorrelated, the FT coefficients are normally distributed and uncorrelated. Further, the probability distribution for the FT coefficients of such an image can readily be obtained by Parseval's theorem. We take advantage of these properties to compute the spatial information in an image by determining the probability of each coefficient (both real and imaginary parts) in the FT, then using the Shannon formalism to calculate information. By using the probability distribution obtained from Parseval's theorem, an effective distance from the uncorrelated or most uncertain case is obtained. The resulting quantity is an information computed in k-space (kSI). This approach provides a robust, facile and highly flexible framework for quantifying spatial information in images and other types of data (of arbitrary dimensions). The kSI metric is tested on a 2D Ising model, frequently used as a model for lipid bilayer; and the temperature-dependent phase transition is accurately determined from the spatial information in configurations of the system.

  13. Spatially Distributed Social Complex Networks

    NASA Astrophysics Data System (ADS)

    Frasco, Gerald F.; Sun, Jie; Rozenfeld, Hernán D.; ben-Avraham, Daniel

    2014-01-01

    We propose a bare-bones stochastic model that takes into account both the geographical distribution of people within a country and their complex network of connections. The model, which is designed to give rise to a scale-free network of social connections and to visually resemble the geographical spread seen in satellite pictures of the Earth at night, gives rise to a power-law distribution for the ranking of cities by population size (but for the largest cities) and reflects the notion that highly connected individuals tend to live in highly populated areas. It also yields some interesting insights regarding Gibrat's law for the rates of city growth (by population size), in partial support of the findings in a recent analysis of real data [Rozenfeld et al., Proc. Natl. Acad. Sci. U.S.A. 105, 18702 (2008).]. The model produces a nontrivial relation between city population and city population density and a superlinear relationship between social connectivity and city population, both of which seem quite in line with real data.

  14. Bayes and empirical Bayes estimators of abundance and density from spatial capture-recapture data

    USGS Publications Warehouse

    Dorazio, Robert M.

    2013-01-01

    In capture-recapture and mark-resight surveys, movements of individuals both within and between sampling periods can alter the susceptibility of individuals to detection over the region of sampling. In these circumstances spatially explicit capture-recapture (SECR) models, which incorporate the observed locations of individuals, allow population density and abundance to be estimated while accounting for differences in detectability of individuals. In this paper I propose two Bayesian SECR models, one for the analysis of recaptures observed in trapping arrays and another for the analysis of recaptures observed in area searches. In formulating these models I used distinct submodels to specify the distribution of individual home-range centers and the observable recaptures associated with these individuals. This separation of ecological and observational processes allowed me to derive a formal connection between Bayes and empirical Bayes estimators of population abundance that has not been established previously. I showed that this connection applies to every Poisson point-process model of SECR data and provides theoretical support for a previously proposed estimator of abundance based on recaptures in trapping arrays. To illustrate results of both classical and Bayesian methods of analysis, I compared Bayes and empirical Bayes esimates of abundance and density using recaptures from simulated and real populations of animals. Real populations included two iconic datasets: recaptures of tigers detected in camera-trap surveys and recaptures of lizards detected in area-search surveys. In the datasets I analyzed, classical and Bayesian methods provided similar – and often identical – inferences, which is not surprising given the sample sizes and the noninformative priors used in the analyses.

  15. Bayes and empirical Bayes estimators of abundance and density from spatial capture-recapture data.

    PubMed

    Dorazio, Robert M

    2013-01-01

    In capture-recapture and mark-resight surveys, movements of individuals both within and between sampling periods can alter the susceptibility of individuals to detection over the region of sampling. In these circumstances spatially explicit capture-recapture (SECR) models, which incorporate the observed locations of individuals, allow population density and abundance to be estimated while accounting for differences in detectability of individuals. In this paper I propose two Bayesian SECR models, one for the analysis of recaptures observed in trapping arrays and another for the analysis of recaptures observed in area searches. In formulating these models I used distinct submodels to specify the distribution of individual home-range centers and the observable recaptures associated with these individuals. This separation of ecological and observational processes allowed me to derive a formal connection between Bayes and empirical Bayes estimators of population abundance that has not been established previously. I showed that this connection applies to every Poisson point-process model of SECR data and provides theoretical support for a previously proposed estimator of abundance based on recaptures in trapping arrays. To illustrate results of both classical and Bayesian methods of analysis, I compared Bayes and empirical Bayes esimates of abundance and density using recaptures from simulated and real populations of animals. Real populations included two iconic datasets: recaptures of tigers detected in camera-trap surveys and recaptures of lizards detected in area-search surveys. In the datasets I analyzed, classical and Bayesian methods provided similar - and often identical - inferences, which is not surprising given the sample sizes and the noninformative priors used in the analyses.

  16. Distribution and abundance of macrobenthic polychaetes along the South Indian coast.

    PubMed

    Musale, Amar S; Desai, Dattesh V

    2011-07-01

    Macrobenthic polychaetes play a significant role in marine benthic food chain. A study was carried out to observe the abundance and diversity of soft bottom macrobenthic polychaetes along the South Indian coast, along with observations on sediment characteristics. The present study indicated an increase in the polychaete diversity as compared to earlier reports. Sixty-three different forms of polychaetes were identified along the coast, which constitute the bulk of the macrobenthic fauna. Thirty-eight species of polychaetes showed higher abundance along the west coast, whereas 25 species showed higher abundance along the east coast. Seabed composition showed a spatial variation in its composition along the coast. Occurrence of Prionospio pinnata and Capitella capitata the deposit feeders and indicators of organic pollution suggesting the sampled area is organically rich. Polychaete abundance was found to be higher along the west coast and was attributed to loose texture of sediment due to high sand and sandy-silt resulting in higher interstitial space for organisms to harbor. Canonical correspondence analysis indicated that majority of polychaete species preferred low organic carbon, sandy silt, or sandy-clay substratum. The lower polychaete abundance at high organic carbon and high silt and clay areas can be attributed to avoidance of organisms to rich organic matter and suboxic levels, being a possible indication that these characteristics adversely affects the polychaete abundance and distribution.

  17. Distribution, abundance, diversity and habitat associations of fishes across a bioregion experiencing rapid coastal development

    NASA Astrophysics Data System (ADS)

    McLean, Dianne L.; Langlois, Tim J.; Newman, Stephen J.; Holmes, Thomas H.; Birt, Matthew J.; Bornt, Katrina R.; Bond, Todd; Collins, Danielle L.; Evans, Scott N.; Travers, Michael J.; Wakefield, Corey B.; Babcock, Russ C.; Fisher, Rebecca

    2016-09-01

    Knowledge of the factors that influence spatial patterns in fish abundance, distribution and diversity are essential for informing fisheries and conservation management. The present study was conducted in the nearshore Pilbara bioregion of north-western Australia where the dynamic marine environment is characterised by large embayments, numerous islands and islets, coexisting with globally significant petrochemical and mineral industries. Within Western Australia, this nearshore bioregion has high biodiversity and is considered to play an essential role in the recruitment of species of commercial importance. To better inform future investigations into both ecological processes and planning scenarios for management, a rapid assessment of the distribution, abundance and associations with nearshore habitats of fishes across the region was conducted. Baited remote underwater stereo-video systems (stereo-BRUVs) were used to simultaneously sample the fish assemblage and habitat composition. Generalised additive mixed models (GAMMs) were used to determine whether the abundance of fishes were related to habitat and a range of environmental variables (visibility, depth, distance to 30 m and 200 m depth isobars, boat ramps and the nearest large embayment (Exmouth Gulf). A diverse fish assemblage comprising 343 species from 58 families was recorded. The abundance and distribution patterns of fishery-target species and of the five most common and abundant species and families were linked positively with areas of high relief, hard coral cover, reef and macroalgae and negatively with the distance to the nearest oceanic waters (200 m depth isobar). This study provides information that can contribute to future marine spatial planning scenarios for management of the Pilbara using a unique, analytical approach that has broad application in biogeography.

  18. Spatial and temporal changes in Lutzomyia longipalpis abundance, a Leishmania infantum vector in an urban area in northeastern Argentina.

    PubMed

    Fernández, María Soledad; Santini, María Soledad; Cavia, Regino; Sandoval, Adolfo Enrique; Pérez, Adriana Alicia; Acardi, Soraya; Salomón, Oscar Daniel

    2013-11-01

    This study aimed to analyse changes in the spatial distribution of Lutzomyia longipalpis in Posadas, an urban area located in northeastern Argentina. Data were obtained during the summer of 2007 and 2009 through two entomological surveys of peridomiciles distributed around the city. The abundance distribution pattern for 2009 was computed and compared with the previous pattern obtained in 2007, when the first human visceral leishmaniasis cases were reported in the city. Vector abundance was also examined in relation to micro and macrohabitat characteristics. In 2007 and 2009, Lu. longipalpis was distributed among 41.5% and 31% of the households in the study area, respectively. In both years, the abundance rates at most of the trapping sites were below 30 Lu. longipalpis per trap per night; however, for areas exhibiting 30-60 Lu. longipalpis and more than 60 Lu. longipalpis, the areas increased in both size and number from 2007-2009. Lu. longipalpis was more abundant in areas with a higher tree and bush cover (a macrohabitat characteristic) and in peridomiciles with accumulated unused material (a microhabitat characteristic). These results will help to prioritise and focus control efforts by defining which peridomiciles display a potentially high abundance of Lu. longipalpis.

  19. Spatial and temporal changes in Lutzomyia longipalpis abundance, a Leishmania infantum vector in an urban area in northeastern Argentina

    PubMed Central

    Fernández, María Soledad; Santini, María Soledad; Cavia, Regino; Sandoval, Adolfo Enrique; Pérez, Adriana Alicia; Acardi, Soraya; Salomón, Oscar Daniel

    2013-01-01

    This study aimed to analyse changes in the spatial distribution of Lutzomyia longipalpis in Posadas, an urban area located in northeastern Argentina. Data were obtained during the summer of 2007 and 2009 through two entomological surveys of peridomiciles distributed around the city. The abundance distribution pattern for 2009 was computed and compared with the previous pattern obtained in 2007, when the first human visceral leishmaniasis cases were reported in the city. Vector abundance was also examined in relation to micro and macrohabitat characteristics. In 2007 and 2009, Lu. longipalpis was distributed among 41.5% and 31% of the households in the study area, respectively. In both years, the abundance rates at most of the trapping sites were below 30 Lu. longipalpis per trap per night; however, for areas exhibiting 30-60 Lu. longipalpis and more than 60 Lu. longipalpis, the areas increased in both size and number from 2007-2009. Lu. longipalpis was more abundant in areas with a higher tree and bush cover (a macrohabitat characteristic) and in peridomiciles with accumulated unused material (a microhabitat characteristic). These results will help to prioritise and focus control efforts by defining which peridomiciles display a potentially high abundance of Lu. longipalpis. PMID:24271040

  20. Geographic variation in cowbird distribution, abundance, and parasitism

    USGS Publications Warehouse

    Morrison, M.L.; Hahn, D.C.; George, T. Luke; Dobkin, David S.

    2002-01-01

    We evaluated geographical patterns in the abundance and distribution of Brown-headed Cowbirds (Molothrus ater), and in the frequency of cowbird parasitism, across North America in relation to habitat fragmentation. We found no distinctive parasitism patterns at the national or even regional scales, but the species is most abundant in the Great Plains, the heart of their original range, and least common in the southeastern U.S. This situation is dynamic, because both the Brown-headed and two other cowbird species are actively expanding their ranges in the southern U.S. We focused almost entirely in this paper on the Brown-headed Cowbird, because it is the only endemic North American cowbird, its distribution is much wider, and it has been much more intensively studied. We determined that landscape is the most meaningful unit of scale for comparing cowbird parasitism patterns as, for example, in comparisons of northeastern and central hardwood forests within agricultural matrices, and suburbanized areas versus western coniferous forests. We concluded that cowbird parasitism patterns were broadly similar within all landscapes. Even comparisons between prominently dissimilar landscapes, such as hardwoods in agriculture and suburbia versus coniferous forest, display a striking similarity in the responses of cowbirds. Our review clearly indicated that proximity of feeding areas is the key factor influencing presence and parasitism patterns within the landscape. We considered intensity of landscape fragmentation from forest-dominated landscapes altered in a forest management context to fragmentation characterized by mixed suburbanization or agricultural development. Our review consistently identified an inverse relationship between extent of forest cover across the landscape and cowbird presence. Invariably, the variation seen in parasitism frequencies within a region was at least partially explained as a response to changes in forest cover. The most salient geographic

  1. Aphid and ladybird beetle abundance depend on the interaction of spatial effects and genotypic diversity.

    PubMed

    Genung, Mark A; Crutsinger, Gregory M; Bailey, Joseph K; Schweitzer, Jennifer A; Sanders, Nathan J

    2012-01-01

    Intraspecific variation and genotypic diversity of host-plants can affect the structure of associated arthropod communities and the dynamics of populations. Similarly, neighboring plants can also affect interactions between host-plants and their associated arthropods. However, most studies on the effects of host-plant genotypes have largely ignored the potential effects of neighboring host-plants on arthropod communities. In this study, we used a common garden experiment to ask how spatial effects of neighboring patches, along with genotype identity and genotypic diversity in tall goldenrod (Solidago altissima), affect the abundances of a common goldenrod herbivore (Uroleucon nigrotuberculatum) and their dominant predator (Harmonia axyridis, a ladybird beetle). Aphid abundance varied 80-fold among genotypes, while ladybird beetle abundance was not affected by genotype identity. Additionally, there were strong effects of neighboring plots: aphid abundance in a focal plot was positively correlated to aphid abundance in nearby plots, suggesting strong spatial patterning in the abundance of aphids. Neither aphid nor ladybird beetle abundance was affected by genotypic diversity. However, focal plot genotypic diversity mediated the strength of the neighborhood effect (i.e., strong effects for genotype polyculture focal plots and weak effects for genotype monoculture focal plots). Our results show that aphids were directly influenced by host-plant genotype identity while ladybird beetles responded mainly to prey abundance, and suggest that genotypic diversity can influence the effects of spatial processes on the plant-herbivore interactions.

  2. Monitoring temporal and spatial variability in sandeel (Ammodytes hexapterus) abundance with pigeon guillemot (Cepphus columba) diets

    USGS Publications Warehouse

    Litzow, Michael A.; Piatt, J.F.; Abookire, Alisa A.; Prichard, A.K.; Robards, Martin D.

    2000-01-01

    We evaluated pigeon guillemots (Cepphus columba) as monitors of nearshore fish abundance and community composition during 1995-1999 at Kachemak Bay, Alaska. We studied the composition of chick diets at 10 colonies and simultaneously measured fish abundance around colonies with beach seines and bottom trawls. Sandeels (Ammodytes hexapterus) formed the majority of the diet at one group of colonies. Temporal variability in sandeel abundance explained 74% of inter-annual variability in diet composition at these colonies and 93% of seasonal variability. Diets at other colonies were dominated by demersal fish. Among these colonies, 81% of the variability in the proportion of sandeels in diets was explained by spatial differences in sanded abundance. Pigeon guillemots exhibited a non-linear functional response to sandeel abundance in the area where these fish were most abundant. Temporal and spatial variability in demersal fish abundance was not consistently reflected in diets. Spatial differences in the proportion of different demersal fishes in the diet may have been driven by differences in guillemot prey preference. Prey specialization by individual pigeon guillemots was common, and may operate at the colony level. Inter-annual variability in sandeel abundance may have been tracked more accurately because the magnitude of change (11-fold) was greater than that of demersal fish (three-fold). (C) 2000 International Council for the Exploration of the Sea.

  3. Multicriteria optimization of the spatial dose distribution

    SciTech Connect

    Schlaefer, Alexander; Viulet, Tiberiu; Muacevic, Alexander; Fürweger, Christoph

    2013-12-15

    Purpose: Treatment planning for radiation therapy involves trade-offs with respect to different clinical goals. Typically, the dose distribution is evaluated based on few statistics and dose–volume histograms. Particularly for stereotactic treatments, the spatial dose distribution represents further criteria, e.g., when considering the gradient between subregions of volumes of interest. The authors have studied how to consider the spatial dose distribution using a multicriteria optimization approach.Methods: The authors have extended a stepwise multicriteria optimization approach to include criteria with respect to the local dose distribution. Based on a three-dimensional visualization of the dose the authors use a software tool allowing interaction with the dose distribution to map objectives with respect to its shape to a constrained optimization problem. Similarly, conflicting criteria are highlighted and the planner decides if and where to relax the shape of the dose distribution.Results: To demonstrate the potential of spatial multicriteria optimization, the tool was applied to a prostate and meningioma case. For the prostate case, local sparing of the rectal wall and shaping of a boost volume are achieved through local relaxations and while maintaining the remaining dose distribution. For the meningioma, target coverage is improved by compromising low dose conformality toward noncritical structures. A comparison of dose–volume histograms illustrates the importance of spatial information for achieving the trade-offs.Conclusions: The results show that it is possible to consider the location of conflicting criteria during treatment planning. Particularly, it is possible to conserve already achieved goals with respect to the dose distribution, to visualize potential trade-offs, and to relax constraints locally. Hence, the proposed approach facilitates a systematic exploration of the optimal shape of the dose distribution.

  4. Spatially explicit modeling of blackbird abundance in the Prairie Pothole Region

    USGS Publications Warehouse

    Forcey, Greg M.; Thogmartin, Wayne E.; Linz, George M.; McKann, Patrick C.; Crimmins, Shawn M.

    2015-01-01

    Knowledge of factors influencing animal abundance is important to wildlife biologists developing management plans. This is especially true for economically important species such as blackbirds (Icteridae), which cause more than $100 million in crop damages annually in the United States. Using data from the North American Breeding Bird Survey, the National Land Cover Dataset, and the National Climatic Data Center, we modeled effects of regional environmental variables on relative abundance of 3 blackbird species (red-winged blackbird,Agelaius phoeniceus; yellow-headed blackbird, Xanthocephalus xanthocephalus; common grackle, Quiscalus quiscula) in the Prairie Pothole Region of the central United States. We evaluated landscape covariates at 3 logarithmically related spatial scales (1,000 ha, 10,000 ha, and 100,000 ha) and modeled weather variables at the 100,000-ha scale. We constructed models a priori using information from published habitat associations. We fit models with WinBUGS using Markov chain Monte Carlo techniques. Both landscape and weather variables contributed strongly to predicting blackbird relative abundance (95% credibility interval did not overlap 0). Variables with the strongest associations with blackbird relative abundance were the percentage of wetland area and precipitation amount from the year before bird surveys were conducted. The influence of spatial scale appeared small—models with the same variables expressed at different scales were often in the best model subset. This large-scale study elucidated regional effects of weather and landscape variables, suggesting that management strategies aimed at reducing damages caused by these species should consider the broader landscape, including weather effects, because such factors may outweigh the influence of localized conditions or site-specific management actions. The regional species distributional models we developed for blackbirds provide a tool for understanding these broader

  5. Spatial-Temporal Survey and Occupancy-Abundance Modeling To Predict Bacterial Community Dynamics in the Drinking Water Microbiome

    PubMed Central

    Pinto, Ameet J.; Schroeder, Joanna; Lunn, Mary; Sloan, William

    2014-01-01

    ABSTRACT Bacterial communities migrate continuously from the drinking water treatment plant through the drinking water distribution system and into our built environment. Understanding bacterial dynamics in the distribution system is critical to ensuring that safe drinking water is being supplied to customers. We present a 15-month survey of bacterial community dynamics in the drinking water system of Ann Arbor, MI. By sampling the water leaving the treatment plant and at nine points in the distribution system, we show that the bacterial community spatial dynamics of distance decay and dispersivity conform to the layout of the drinking water distribution system. However, the patterns in spatial dynamics were weaker than those for the temporal trends, which exhibited seasonal cycling correlating with temperature and source water use patterns and also demonstrated reproducibility on an annual time scale. The temporal trends were driven by two seasonal bacterial clusters consisting of multiple taxa with different networks of association within the larger drinking water bacterial community. Finally, we show that the Ann Arbor data set robustly conforms to previously described interspecific occupancy abundance models that link the relative abundance of a taxon to the frequency of its detection. Relying on these insights, we propose a predictive framework for microbial management in drinking water systems. Further, we recommend that long-term microbial observatories that collect high-resolution, spatially distributed, multiyear time series of community composition and environmental variables be established to enable the development and testing of the predictive framework. PMID:24865557

  6. Spatial distribution of glycerophospholipids in the ocular lens.

    PubMed

    Pól, Jaroslav; Vidová, Veronika; Hyötyläinen, Tuulia; Volný, Michael; Novák, Petr; Strohalm, Martin; Kostiainen, Risto; Havlíček, Vladimír; Wiedmer, Susanne K; Holopainen, Juha M

    2011-04-29

    Knowledge of the spatial distribution of lipids in the intraocular lens is important for understanding the physiology and biochemistry of this unique tissue and for gaining a better insight into the mechanisms underlying diseases of the lens. Following our previous study showing the spatial distribution of sphingolipids in the porcine lens, the current study used ultra performance liquid chromatography quadrupole time-of-flight mass spectrometry (UPLC-QTOFMS) to provide the whole lipidome of porcine lens and these studies were supplemented by matrix-assisted laser desorption ionization mass spectrometry imaging (MALDI MSI) of the lens using ultra-high resolution Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) to determine the spatial distribution of glycerophospholipids. Altogether 172 lipid species were identified with high confidence and their concentration was determined. Sphingomyelins, phosphatidylcholines, and phosphatidylethanolamines were the most abundant lipid classes. We then determined the spatial and concentration-dependent distributions of 20 phosphatidylcholines, 6 phosphatidylethanolamines, and 4 phosphatidic acids. Based on the planar molecular images of the lipids, we report the organization of fiber cell membranes within the ocular lens and suggest roles for these lipids in normal and diseased lenses.

  7. Spatial Distribution of Glycerophospholipids in the Ocular Lens

    PubMed Central

    Pól, Jaroslav; Vidová, Veronika; Hyötyläinen, Tuulia; Volný, Michael; Novák, Petr; Strohalm, Martin; Kostiainen, Risto; Havlíček, Vladimír; Wiedmer, Susanne K.; Holopainen, Juha M.

    2011-01-01

    Knowledge of the spatial distribution of lipids in the intraocular lens is important for understanding the physiology and biochemistry of this unique tissue and for gaining a better insight into the mechanisms underlying diseases of the lens. Following our previous study showing the spatial distribution of sphingolipids in the porcine lens, the current study used ultra performance liquid chromatography quadrupole time-of-flight mass spectrometry (UPLC-QTOFMS) to provide the whole lipidome of porcine lens and these studies were supplemented by matrix-assisted laser desorption ionization mass spectrometry imaging (MALDI MSI) of the lens using ultra-high resolution Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) to determine the spatial distribution of glycerophospholipids. Altogether 172 lipid species were identified with high confidence and their concentration was determined. Sphingomyelins, phosphatidylcholines, and phosphatidylethanolamines were the most abundant lipid classes. We then determined the spatial and concentration-dependent distributions of 20 phosphatidylcholines, 6 phosphatidylethanolamines, and 4 phosphatidic acids. Based on the planar molecular images of the lipids, we report the organization of fiber cell membranes within the ocular lens and suggest roles for these lipids in normal and diseased lenses. PMID:21559377

  8. Summer Abundance and Distribution of Proteorhodopsin Genes in the Western Arctic Ocean

    PubMed Central

    Boeuf, Dominique; Lami, Raphaël; Cunnington, Emelyne; Jeanthon, Christian

    2016-01-01

    Proteorhodopsins (PR) are phylogenetically diverse and highly expressed proton pumps in marine bacterial communities. The phylogenetic diversity and in situ expression of the main PR groups in polar off-shore, coastal and estuarine waters is poorly known and their abundance has not yet been reported. Here, we show that PR gene sequences of the southern Beaufort Sea including MacKenzie shelf and estuary are mainly affiliated to Gammaproteobacteria, Alphaproteobacteria, and Bacteroidetes. Substantial overlap (78%) between DNA- and cDNA-based librairies indicated in situ PR transcription within a large fraction of PR-containing community. Sets of specific qPCR primers were designed to measure the absolute abundances of the major PR types. Spatial and depth profiles showed that PR-containing bacteria were abundant throughout the photic zone, comprising up to 45% of total bacteria. Although their abundance varied greatly with location and depth, Alphaproteobacteria predominated in the PR community in all water masses, with SAR11 as the major PR type. Low nutrient concentrations rather than light were the environmental drivers that best explained the abundance and distribution of arctic PR types. Together, our data suggests that PR-based phototrophy could be the major phototrophic prokaryotic process during the Arctic Ocean summer. PMID:27790192

  9. Monitoring great ape and elephant abundance at large spatial scales: measuring effectiveness of a conservation landscape.

    PubMed

    Stokes, Emma J; Strindberg, Samantha; Bakabana, Parfait C; Elkan, Paul W; Iyenguet, Fortuné C; Madzoké, Bola; Malanda, Guy Aimé F; Mowawa, Brice S; Moukoumbou, Calixte; Ouakabadio, Franck K; Rainey, Hugo J

    2010-04-23

    Protected areas are fundamental to biodiversity conservation, but there is growing recognition of the need to extend beyond protected areas to meet the ecological requirements of species at larger scales. Landscape-scale conservation requires an evaluation of management impact on biodiversity under different land-use strategies; this is challenging and there exist few empirical studies. In a conservation landscape in northern Republic of Congo we demonstrate the application of a large-scale monitoring program designed to evaluate the impact of conservation interventions on three globally threatened species: western gorillas, chimpanzees and forest elephants, under three land-use types: integral protection, commercial logging, and community-based natural resource management. We applied distance-sampling methods to examine species abundance across different land-use types under varying degrees of management and human disturbance. We found no clear trends in abundance between land-use types. However, units with interventions designed to reduce poaching and protect habitats--irrespective of land-use type--harboured all three species at consistently higher abundance than a neighbouring logging concession undergoing no wildlife management. We applied Generalized-Additive Models to evaluate a priori predictions of species response to different landscape processes. Our results indicate that, given adequate protection from poaching, elephants and gorillas can profit from herbaceous vegetation in recently logged forests and maintain access to ecologically important resources located outside of protected areas. However, proximity to the single integrally protected area in the landscape maintained an overriding positive influence on elephant abundance, and logging roads--even subject to anti-poaching controls--were exploited by elephant poachers and had a major negative influence on elephant distribution. Chimpanzees show a clear preference for unlogged or more mature forests

  10. Large-Scale Geographic Variation in Distribution and Abundance of Australian Deep-Water Kelp Forests

    PubMed Central

    Marzinelli, Ezequiel M.; Williams, Stefan B.; Babcock, Russell C.; Barrett, Neville S.; Johnson, Craig R.; Jordan, Alan; Kendrick, Gary A.; Pizarro, Oscar R.; Smale, Dan A.; Steinberg, Peter D.

    2015-01-01

    Despite the significance of marine habitat-forming organisms, little is known about their large-scale distribution and abundance in deeper waters, where they are difficult to access. Such information is necessary to develop sound conservation and management strategies. Kelps are main habitat-formers in temperate reefs worldwide; however, these habitats are highly sensitive to environmental change. The kelp Ecklonia radiate is the major habitat-forming organism on subtidal reefs in temperate Australia. Here, we provide large-scale ecological data encompassing the latitudinal distribution along the continent of these kelp forests, which is a necessary first step towards quantitative inferences about the effects of climatic change and other stressors on these valuable habitats. We used the Autonomous Underwater Vehicle (AUV) facility of Australia’s Integrated Marine Observing System (IMOS) to survey 157,000 m2 of seabed, of which ca 13,000 m2 were used to quantify kelp covers at multiple spatial scales (10–100 m to 100–1,000 km) and depths (15–60 m) across several regions ca 2–6° latitude apart along the East and West coast of Australia. We investigated the large-scale geographic variation in distribution and abundance of deep-water kelp (>15 m depth) and their relationships with physical variables. Kelp cover generally increased with latitude despite great variability at smaller spatial scales. Maximum depth of kelp occurrence was 40–50 m. Kelp latitudinal distribution along the continent was most strongly related to water temperature and substratum availability. This extensive survey data, coupled with ongoing AUV missions, will allow for the detection of long-term shifts in the distribution and abundance of habitat-forming kelp and the organisms they support on a continental scale, and provide information necessary for successful implementation and management of conservation reserves. PMID:25693066

  11. Constraining the Galactic potential via action-based distribution functions for mono-abundance stellar populations

    NASA Astrophysics Data System (ADS)

    Ting, Yuan-Sen; Rix, Hans-Walter; Bovy, Jo; van de Ven, Glenn

    2013-09-01

    We present a rigorous and practical way of constraining the Galactic potential based on the phase-space information for many individual stars. Such an approach is needed to dynamically model the data from ongoing spectroscopic surveys of the Galaxy and in the future Gaia. This approach describes the orbit distribution of stars by a family of parametrized distribution function (DF) proposed by McMillan and Binney, which are based on actions. We find that these parametrized DFs are flexible enough to capture well the observed phase-space distributions of individual abundance-selected Galactic subpopulations of stars (`mono-abundance populations') for a disc-like gravitational potential, which enables independent dynamical constraints from each of the Galactic mono-abundance populations. We lay out a statistically rigorous way to constrain the Galactic potential parameters by constructing the joint likelihood of potential and DF parameters, and subsequently marginalizing over the DF parameters. This approach explicitly incorporates the spatial selection function inherent to all Galactic surveys, and can account for the uncertainties of the individual position-velocity observations. On that basis, we study the precision of the parameters of the Galactic potential that can be reached with various sample sizes and realistic spatial selection functions. By creating mock samples from the DF, we show that, even under a restrictive and realistic spatial selection function, given a two-parameter gravitational potential, one can recover the true potential parameters to a few per cent with sample sizes of a few thousands. The assumptions of axisymmetry, of DFs that are smooth in the actions and of no time variation remain important limitations in our current study.

  12. Hierarchical spatial models of abundance and occurrence from imperfect survey data

    USGS Publications Warehouse

    Royle, J. Andrew; Kery, M.; Gautier, R.; Schmid, Hans

    2007-01-01

    Many estimation and inference problems arising from large-scale animal surveys are focused on developing an understanding of patterns in abundance or occurrence of a species based on spatially referenced count data. One fundamental challenge, then, is that it is generally not feasible to completely enumerate ('census') all individuals present in each sample unit. This observation bias may consist of several components, including spatial coverage bias (not all individuals in the Population are exposed to sampling) and detection bias (exposed individuals may go undetected). Thus, observations are biased for the state variable (abundance, occupancy) that is the object of inference. Moreover, data are often sparse for most observation locations, requiring consideration of methods for spatially aggregating or otherwise combining sparse data among sample units. The development of methods that unify spatial statistical models with models accommodating non-detection is necessary to resolve important spatial inference problems based on animal survey data. In this paper, we develop a novel hierarchical spatial model for estimation of abundance and occurrence from survey data wherein detection is imperfect. Our application is focused on spatial inference problems in the Swiss Survey of Common Breeding Birds. The observation model for the survey data is specified conditional on the unknown quadrat population size, N(s). We augment the observation model with a spatial process model for N(s), describing the spatial variation in abundance of the species. The model includes explicit sources of variation in habitat structure (forest, elevation) and latent variation in the form of a correlated spatial process. This provides a model-based framework for combining the spatially referenced samples while at the same time yielding a unified treatment of estimation problems involving both abundance and occurrence. We provide a Bayesian framework for analysis and prediction based on the

  13. [Spatial distribution of soil animals: a geostatistical approach].

    PubMed

    Gongal'skiĭ, K B; Zaĭtsev, A S; Savin, F A

    2009-01-01

    Spatial distribution is one of the main parameters of populations of soil animals. Spatial soil ecology having been developing during last decades bases animal distribution estimates on the geostatistic approach. A simple principle underlying the latter's methodology is that samples placed close to each other have more similarity than those distantly placed, it is usually called autocorrelation. The principles of basic statistics cannot be applied to autocorrelated data. Apiplying variograms, Mantel test, Moran index, and SADIE statistics enables to reveal the size of clusters of both soil parameters and soil animal aggregations. This direction of investigations quite popular in the western literature is just rarely employed by Russian soil ecologists. Statistically correct procedures allow developing field sampling methodology that is vital in applied studies of soil ecology, namely, in bioindication and ecotoxicology of soils, in the assessment of biological resources in terms of abundance and biomass of soil animals. This methodology has a decisive importance in the development of soil biogeography.

  14. Habitat characteristics predicting distribution and abundance patterns of scallops in D'Entrecasteaux Channel, Tasmania.

    PubMed

    Mendo, Tania; Lyle, Jeremy M; Moltschaniwskyj, Natalie A; Tracey, Sean R; Semmens, Jayson M

    2014-01-01

    Habitat characteristics greatly influence the patterns of distribution and abundance in scallops, providing structure for the settlement of spat and influencing predation risk and rates of survival. Establishing scallop-habitat relationships is relevant to understanding the ecological processes that regulate scallop populations and to managing critical habitats. This information is particularly relevant for the D'Entrecasteaux Channel, south-eastern Tasmania (147.335 W, 43.220 S), a region that has supported significant but highly variable scallop production over many years, including protracted periods of stock collapse. Three species of scallops are present in the region; the commercial scallop Pecten fumatus, the queen scallop Equichlamys bifrons, and the doughboy scallop Mimachlamys asperrima. We used dive surveys and Generalized Additive Modelling to examine the relationship between the distribution and abundance patterns of each species and associated habitat characteristics. The aggregated distribution of each species could be predicted as a function of sediment type and species-specific habitat structural components. While P. fumatus was strongly associated with finer sediments and E. bifrons with coarse grain sediments, M. asperrima had a less selective association, possibly related to its ability to attach on a wide range of substrates. Other habitat characteristics explaining P. fumatus abundance were depth, Asterias amurensis abundance, shell and macroalgae cover. Equichlamys bifrons was strongly associated with macroalgae and seagrass cover, whereas M. asperrima abundance was greatly explained by sponge cover. The models define a set of relationships from which plausible hypotheses can be developed. We propose that these relationships are mediated by predation pressure as well as the specific behavioural characteristics of each species. The findings also highlight the specific habitat characteristics that are relevant for spatial management and habitat

  15. Habitat Characteristics Predicting Distribution and Abundance Patterns of Scallops in D’Entrecasteaux Channel, Tasmania

    PubMed Central

    Mendo, Tania; Lyle, Jeremy M.; Moltschaniwskyj, Natalie A.; Tracey, Sean R.; Semmens, Jayson M.

    2014-01-01

    Habitat characteristics greatly influence the patterns of distribution and abundance in scallops, providing structure for the settlement of spat and influencing predation risk and rates of survival. Establishing scallop-habitat relationships is relevant to understanding the ecological processes that regulate scallop populations and to managing critical habitats. This information is particularly relevant for the D’Entrecasteaux Channel, south-eastern Tasmania (147.335 W, 43.220 S), a region that has supported significant but highly variable scallop production over many years, including protracted periods of stock collapse. Three species of scallops are present in the region; the commercial scallop Pecten fumatus, the queen scallop Equichlamys bifrons, and the doughboy scallop Mimachlamys asperrima. We used dive surveys and Generalized Additive Modelling to examine the relationship between the distribution and abundance patterns of each species and associated habitat characteristics. The aggregated distribution of each species could be predicted as a function of sediment type and species-specific habitat structural components. While P. fumatus was strongly associated with finer sediments and E. bifrons with coarse grain sediments, M. asperrima had a less selective association, possibly related to its ability to attach on a wide range of substrates. Other habitat characteristics explaining P. fumatus abundance were depth, Asterias amurensis abundance, shell and macroalgae cover. Equichlamys bifrons was strongly associated with macroalgae and seagrass cover, whereas M. asperrima abundance was greatly explained by sponge cover. The models define a set of relationships from which plausible hypotheses can be developed. We propose that these relationships are mediated by predation pressure as well as the specific behavioural characteristics of each species. The findings also highlight the specific habitat characteristics that are relevant for spatial management and

  16. Vertical distribution and diel patterns of zooplankton abundance and biomass at Conch Reef, Florida Keys (USA)

    PubMed Central

    Heidelberg, Karla B.; O'Neil, Keri L.; Bythell, John C.; Sebens, Kenneth P.

    2010-01-01

    Zooplankton play an important role in the trophic dynamics of coral reef ecosystems. Detailed vertical and temporal distribution and biomass of zooplankton were evaluated at four heights off the bottom and at six times throughout the diel cycle over a coral reef in the Florida Keys (USA). Zooplankton abundance averaged 4396 ± 1949 SD individuals m−3, but temporal and spatial distributions varied for individual zooplankton taxa by time of day and by height off the bottom. Copepods comprised 93–96% of the abundance in the samples. Taxon-based zooplankton CHN values paired with abundance data were used to estimate biomass. Average daily biomass ranged from 3.1 to 21.4 mg C m−3 and differed by both height off the bottom and by time of day. While copepods were the numerically dominant organisms, their contribution to biomass was only 35% of the total zooplankton biomass. Our findings provide important support for the new emerging paradigm of how zooplankton are distributed over reefs. PMID:20046854

  17. Spatial Inference for Distributed Remote Sensing Data

    NASA Astrophysics Data System (ADS)

    Braverman, A. J.; Katzfuss, M.; Nguyen, H.

    2014-12-01

    Remote sensing data are inherently spatial, and a substantial portion of their value for scientific analyses derives from the information they can provide about spatially dependent processes. Geophysical variables such as atmopsheric temperature, cloud properties, humidity, aerosols and carbon dioxide all exhibit spatial patterns, and satellite observations can help us learn about the physical mechanisms driving them. However, remote sensing observations are often noisy and incomplete, so inferring properties of true geophysical fields from them requires some care. These data can also be massive, which is both a blessing and a curse: using more data drives uncertainties down, but also drives costs up, particularly when data are stored on different computers or in different physical locations. In this talk I will discuss a methodology for spatial inference on massive, distributed data sets that does not require moving large volumes of data. The idea is based on a combination of ideas including modeling spatial covariance structures with low-rank covariance matrices, and distributed estimation in sensor or wireless networks.

  18. Spatial Variations of Chemical Abundances in Titan's Atmosphere as Revealed by ALMA

    NASA Astrophysics Data System (ADS)

    Thelen, Alexander E.; Nixon, Conor; Chanover, Nancy J.; Molter, Edward; Serigano, Joseph; Cordiner, Martin; Charnley, Steven B.; Teanby, Nicholas A.; Irwin, Patrick

    2016-10-01

    Complex organic molecules in Titan's atmosphere - formed through the dissociation of N2 and CH4 - exhibit latitudinal variations in abundance as observed by Cassini. Chemical species including hydrocarbons - such as CH3CCH - and nitriles - HCN, HC3N, CH3CN, and C2H5CN - may show spatial abundance variations as a result of atmospheric circulation, photochemical production and subsequent destruction throughout Titan's seasonal cycle. Recent calibration images of Titan taken by the Atacama Large Millimeter/Submillimeter Array (ALMA) with beam sizes of ~0.3'' allow for measurements of rotational transition lines of these species in spatially resolved regions of Titan's disk. We present abundance profiles obtained from public ALMA data taken in 2014, as Titan transitioned into northern summer. Abundance profiles in Titan's lower/middle atmosphere were retrieved by modeling high resolution ALMA spectra using the Non-linear Optimal Estimator for MultivariatE Spectral analySIS (NEMESIS) radiative transfer code. These retrievals were performed using spatial temperature profiles obtained by modeling strong CO lines from datasets taken in similar times with comparable resolution. We compare the abundance variations of chemical species to measurements made using Cassini data. Comparisons of chemical species with strong abundance enhancements over the poles will inform our knowledge of chemical lifetimes in Titan's atmosphere, and allow us to observe the important changes in production and circulation of numerous organic molecules which are attributed to Titan's seasons.

  19. Spatial scaling of avian population dynamics: population abundance, growth rate, and variability.

    PubMed

    Jones, Jason; Doran, Patrick J; Holmes, Richard T

    2007-10-01

    Synchrony in population fluctuations has been identified as an important component of population dynamics. In a previous study, we determined that local-scale (<15-km) spatial synchrony of bird populations in New England was correlated with synchronous fluctuations in lepidopteran larvae abundance and with the North Atlantic Oscillation. Here we address five questions that extend the scope of our earlier study using North American Breeding Bird Survey data. First, do bird populations in eastern North America exhibit spatial synchrony in abundances at scales beyond those we have documented previously? Second, does spatial synchrony depend on what population metric is analyzed (e.g., abundance, growth rate, or variability)? Third, is there geographic concordance in where species exhibit synchrony? Fourth, for those species that exhibit significant geographic concordance, are there landscape and habitat variables that contribute to the observed patterns? Fifth, is spatial synchrony affected by a species' life history traits? Significant spatial synchrony was common and its magnitude was dependent on the population metric analyzed. Twenty-four of 29 species examined exhibited significant synchrony in population abundance: mean local autocorrelation (rho)= 0.15; mean spatial extent (mean distance where rho=0) = 420.7 km. Five of the 29 species exhibited significant synchrony in annual population growth rate (mean local autocorrelation = 0.06, mean distance = 457.8 km). Ten of the 29 species exhibited significant synchrony in population abundance variability (mean local autocorrelation = 0.49, mean distance = 413.8 km). Analyses of landscape structure indicated that habitat variables were infrequent contributors to spatial synchrony. Likewise, we detected no effects of life history traits on synchrony in population abundance or growth rate. However, short-distance migrants exhibited more spatially extensive synchrony in population variability than either year

  20. Community-Weighted Mean Plant Traits Predict Small Scale Distribution of Insect Root Herbivore Abundance.

    PubMed

    Sonnemann, Ilja; Pfestorf, Hans; Jeltsch, Florian; Wurst, Susanne

    2015-01-01

    Small scale distribution of insect root herbivores may promote plant species diversity by creating patches of different herbivore pressure. However, determinants of small scale distribution of insect root herbivores, and impact of land use intensity on their small scale distribution are largely unknown. We sampled insect root herbivores and measured vegetation parameters and soil water content along transects in grasslands of different management intensity in three regions in Germany. We calculated community-weighted mean plant traits to test whether the functional plant community composition determines the small scale distribution of insect root herbivores. To analyze spatial patterns in plant species and trait composition and insect root herbivore abundance we computed Mantel correlograms. Insect root herbivores mainly comprised click beetle (Coleoptera, Elateridae) larvae (43%) in the investigated grasslands. Total insect root herbivore numbers were positively related to community-weighted mean traits indicating high plant growth rates and biomass (specific leaf area, reproductive- and vegetative plant height), and negatively related to plant traits indicating poor tissue quality (leaf C/N ratio). Generalist Elaterid larvae, when analyzed independently, were also positively related to high plant growth rates and furthermore to root dry mass, but were not related to tissue quality. Insect root herbivore numbers were not related to plant cover, plant species richness and soil water content. Plant species composition and to a lesser extent plant trait composition displayed spatial autocorrelation, which was not influenced by land use intensity. Insect root herbivore abundance was not spatially autocorrelated. We conclude that in semi-natural grasslands with a high share of generalist insect root herbivores, insect root herbivores affiliate with large, fast growing plants, presumably because of availability of high quantities of food. Affiliation of insect root

  1. Community- Weighted Mean Plant Traits Predict Small Scale Distribution of Insect Root Herbivore Abundance

    PubMed Central

    Jeltsch, Florian; Wurst, Susanne

    2015-01-01

    Small scale distribution of insect root herbivores may promote plant species diversity by creating patches of different herbivore pressure. However, determinants of small scale distribution of insect root herbivores, and impact of land use intensity on their small scale distribution are largely unknown. We sampled insect root herbivores and measured vegetation parameters and soil water content along transects in grasslands of different management intensity in three regions in Germany. We calculated community-weighted mean plant traits to test whether the functional plant community composition determines the small scale distribution of insect root herbivores. To analyze spatial patterns in plant species and trait composition and insect root herbivore abundance we computed Mantel correlograms. Insect root herbivores mainly comprised click beetle (Coleoptera, Elateridae) larvae (43%) in the investigated grasslands. Total insect root herbivore numbers were positively related to community-weighted mean traits indicating high plant growth rates and biomass (specific leaf area, reproductive- and vegetative plant height), and negatively related to plant traits indicating poor tissue quality (leaf C/N ratio). Generalist Elaterid larvae, when analyzed independently, were also positively related to high plant growth rates and furthermore to root dry mass, but were not related to tissue quality. Insect root herbivore numbers were not related to plant cover, plant species richness and soil water content. Plant species composition and to a lesser extent plant trait composition displayed spatial autocorrelation, which was not influenced by land use intensity. Insect root herbivore abundance was not spatially autocorrelated. We conclude that in semi-natural grasslands with a high share of generalist insect root herbivores, insect root herbivores affiliate with large, fast growing plants, presumably because of availability of high quantities of food. Affiliation of insect root

  2. Spatial Distribution of Flower Color Induced by Interspecific Sexual Interaction

    PubMed Central

    Takahashi, Yuma; Takakura, Koh-ichi; Kawata, Masakado

    2016-01-01

    Understanding the mechanisms shaping the spatiotemporal distribution of species has long been a central concern of ecology and evolutionary biology. Contemporary patterns of plant assemblies suggest that sexual interactions among species, i.e., reproductive interference, lead to the exclusive distributions of closely related species that share pollinators. However, the fitness consequences and the initial ecological/evolutionary responses to reproductive interference remain unclear in nature, since reproductive isolation or allopatric distribution has already been achieved in the natural community. In Japan, three species of blue-eyed grasses (Sisyrinchium) with incomplete reproductive isolation have recently colonized and occur sympatrically. Two of them are monomorphic with white flowers, whereas the other exhibits heritable color polymorphism (white and purple morphs). Here we investigated the effects of the presence of two monomorphic species on the distribution and reproductive success of color morphs. The frequency and reproductive success of white morphs decreased in area where monomorphic species were abundant, while those of purple morphs did not. The rate of hybridization between species was higher in white morphs than in the purple ones. Resource competition and habitat preference seemed not to contribute to the spatial distribution and reproductive success of two morphs. Our results supported that color-dependent reproductive interference determines the distribution of flower color polymorphism in a habitat, implying ecological sorting promoted by pollinator-mediated reproductive interference. Our study helps us to understand the evolution and spatial structure of flower color in a community. PMID:27723785

  3. Abundance and distribution of Legionellaceae in Puerto Rican waters.

    PubMed Central

    Ortiz-Roque, C M; Hazen, T C

    1987-01-01

    Waters in marine and freshwater areas of Puerto Rico were analyzed for the presence of Legionella spp. by direct fluorescent antibody assay with guinea pig confirmation. Several species, including L. bozemanii, L. dumoffii, L. gormanii, L. longbeachae, L. micdadei, and L. pneumophila, were widely distributed among all sites. Legionellaceae, including L. pneumophila, were found in high densities in water collected in the rain forest from epiphytes in trees 30 ft. (about 9.25 m) above the ground. Both interspecific and intersite variations were significant. L. pneumophila was the most abundant species at all sites, with average densities of 10(4) cells ml-1, very close to the range which is potentially pathogenic for humans. Densities of L. pneumophila were highest in sewage-contaminated coastal waters. These are the highest densities of Legionella spp. ever reported for marine habitats. Densities of L. pneumophila were positively correlated with concentrations of sulfates, phosphates, and pH. A survey of 88 fatal atypical pneumonia cases at a Puerto Rico hospital showed that 15% of the patients had L. pneumophila infections. This study establishes L. pneumophila as a relatively common cause of atypical pneumonia in Puerto Rico and suggests natural aquatic habitats as possible sources or reservoirs of pathogenic Legionella spp. in the tropics. Images PMID:3314710

  4. Abundance, distribution and size structure of Diadema antillarum (Echinodermata: Diadematidae) in South Eastern Cuban coral reefs.

    PubMed

    Martín Blanco, F; González Sansón, G; Pina Amargós, F; Clero Alonso, L

    2010-06-01

    The 1983-1984 mass mortality event of Diadema antillarum affected more than 93% of the total Caribbean population. Although there are no records about the status of Diadema populations before and after die-off on Cuban reefs, anecdotal information suggests that populations were struck. We analyzed spatial variation in the abundance and size structure of D. antillarum in 22 reefs sites in Jardines de la Reina, from June 2004 to September 2005. Counts of Diadema were performed in five 30x2 m transects at each sampling site and sampling time, and test diameters were measured in September 2005 at the same fore reefs. Abundances were higher at reef crests (mean densities 0.08-2.18 ind./m2), while reef slope populations reached a maximum site level of 0.13 ind./m2 at only one site and showed values up to three orders of magnitude lower than those from reef crests. Highest abundance occurred at the west margin of major channels between keys where larval recruitment seems to be favored by local oceanographic features and facilitated by the abundance of Echinometra lucunter. The size frequency distribution of D. antillarum indicates that recruitment began to be noticeable three years before September 2005, suggesting these populations were depleted in the past and they are recovering now.

  5. Distribution and Abundance of the World's Smallest Primate, Microcebus berthae, in Central Western Madagascar.

    PubMed

    Schäffler, Livia; Kappeler, Peter M

    2014-01-01

    The distribution of most recently discovered or described lemur species remains poorly known, but many appear to have small geographical ranges, making them vulnerable to extinction. Research can contribute to future conservation actions on behalf of these species by providing accurate information on local distribution and abundance. The distribution of the world's smallest primate, the endangered Madame Berthe's mouse lemur (Microcebus berthae), is limited to the Menabe Central region of western Madagascar. This species was discovered in the 1990s, but many fundamental aspects of its ecology remain unknown. The aims of our study were therefore to determine the actual distribution of Microcebus berthae across the forests of this region, to estimate population density, and to examine the species' response to anthropogenic activities. We established 35 1-km line transects across Menabe Central, on which we surveyed mouse lemurs by distance sampling and live trapping. Microcebus berthae does not occur in all remaining forests of this small region and its population density is highly heterogeneous, both across its geographic range and locally. Within its area of occupancy, the population of Microcebus berthae not only was distributed according to spatial heterogeneities of the habitat, but also responded to anthropogenic disturbances and varied seasonally. Our results indicate that Microcebus berthae is susceptible to habitat degradation and avoids human environments spatially. As none of the forest remnants in which the species still occurs were officially protected until recently, immediate conservation actions should focus on effectively protecting Kirindy and Ambadira forests.

  6. Landscape context affects genetic diversity at a much larger spatial extent than population abundance.

    PubMed

    Jackson, Nathan D; Fahrig, Lenore

    2014-04-01

    Regional landscape context influences the fate of local populations, yet the spatial extent of this influence (called the "scale of effect") is difficult to predict. Thus, a major problem for conservation management is to understand the factors governing the scale of effect such that landscape structure surrounding a focal area is measured and managed at the biologically relevant spatial scale. One unresolved question is whether and how scale of effect may depend on the population response measured (e.g., abundance vs. presence/absence). If scales of effect differ across population outcomes of a given species, management based on one outcome may compromise another, further complicating conservation decision making. Here we used an individual-based simulation model to investigate how scales of effect of landscapes that vary in the amount and fragmentation of habitat differ among three population responses (local abundance, presence/absence, and genetic diversity). We also explored how the population response measured affects the relative importance of habitat amount and fragmentation in shaping local populations, and how dispersal distance mediates the magnitude and spatial scale of these effects. We found that the spatial scale most strongly influencing local populations depended on the outcome measured and was predicted to be small for abundance, medium-sized for presence/absence, and large for genetic diversity. Increasing spatial scales likely resulted from increasing temporal scales over which outcomes were regulated (with local genetic diversity being regulated over the largest number of generations). Thus, multiple generations of dispersal and gene flow linked local population patterns to regional population size. The effects of habitat amount dominated the effects of fragmentation for all three outcomes. Increased dispersal distance strongly reduced abundance, but not presence/absence or genetic diversity. Our results suggest that managing protected species

  7. Landscape models of brook trout abundance and distribution in lotic habitat with field validation

    USGS Publications Warehouse

    McKenna, James E.; Johnson, James H.

    2011-01-01

    Brook trout Salvelinus fontinalis are native fish in decline owing to environmental changes. Predictions of their potential distribution and a better understanding of their relationship to habitat conditions would enhance the management and conservation of this valuable species. We used over 7,800 brook trout observations throughout New York State and georeferenced, multiscale landscape condition data to develop four regionally specific artificial neural network models to predict brook trout abundance in rivers and streams. Land cover data provided a general signature of human activity, but other habitat variables were resistant to anthropogenic changes (i.e., changing on a geological time scale). The resulting models predict the potential for any stream to support brook trout. The models were validated by holding 20% of the data out as a test set and by comparison with additional field collections from a variety of habitat types. The models performed well, explaining more than 90% of data variability. Errors were often associated with small spatial displacements of predicted values. When compared with the additional field collections (39 sites), 92% of the predictions were off by only a single class from the field-observed abundances. Among “least-disturbed” field collection sites, all predictions were correct or off by a single abundance class, except for one where brown trout Salmo trutta were present. Other degrading factors were evident at most sites where brook trout were absent or less abundant than predicted. The most important habitat variables included landscape slope, stream and drainage network sizes, water temperature, and extent of forest cover. Predicted brook trout abundances were applied to all New York streams, providing a synoptic map of the distribution of brook trout habitat potential. These fish models set benchmarks of best potential for streams to support brook trout under broad-scale human influences and can assist with planning and

  8. Integrating spatially explicit indices of abundance and habitat quality: an applied example for greater sage-grouse management

    USGS Publications Warehouse

    Coates, Peter S.; Casazza, Michael L.; Ricca, Mark A.; Brussee, Brianne E.; Blomberg, Erik J.; Gustafson, K. Benjamin; Overton, Cory T.; Davis, Dawn M.; Niell, Lara E.; Espinosa, Shawn P.; Gardner, Scott C.; Delehanty, David J.

    2016-01-01

    Predictive species distributional models are a cornerstone of wildlife conservation planning. Constructing such models requires robust underpinning science that integrates formerly disparate data types to achieve effective species management. Greater sage-grouse Centrocercus urophasianus, hereafter “sage-grouse” populations are declining throughout sagebrush-steppe ecosystems in North America, particularly within the Great Basin, which heightens the need for novel management tools that maximize use of available information. Herein, we improve upon existing species distribution models by combining information about sage-grouse habitat quality, distribution, and abundance from multiple data sources. To measure habitat, we created spatially explicit maps depicting habitat selection indices (HSI) informed by > 35 500 independent telemetry locations from > 1600 sage-grouse collected over 15 years across much of the Great Basin. These indices were derived from models that accounted for selection at different spatial scales and seasons. A region-wide HSI was calculated using the HSI surfaces modelled for 12 independent subregions and then demarcated into distinct habitat quality classes. We also employed a novel index to describe landscape patterns of sage-grouse abundance and space use (AUI). The AUI is a probabilistic composite of: (i) breeding density patterns based on the spatial configuration of breeding leks and associated trends in male attendance; and (ii) year-round patterns of space use indexed by the decreasing probability of use with increasing distance to leks. The continuous AUI surface was then reclassified into two classes representing high and low/no use and abundance. Synthesis and applications. Using the example of sage-grouse, we demonstrate how the joint application of indices of habitat selection, abundance, and space use derived from multiple data sources yields a composite map that can guide effective allocation of management intensity across

  9. Integrating spatially explicit indices of abundance and habitat quality: an applied example for greater sage-grouse management.

    PubMed

    Coates, Peter S; Casazza, Michael L; Ricca, Mark A; Brussee, Brianne E; Blomberg, Erik J; Gustafson, K Benjamin; Overton, Cory T; Davis, Dawn M; Niell, Lara E; Espinosa, Shawn P; Gardner, Scott C; Delehanty, David J

    2016-02-01

    Predictive species distributional models are a cornerstone of wildlife conservation planning. Constructing such models requires robust underpinning science that integrates formerly disparate data types to achieve effective species management.Greater sage-grouse Centrocercus urophasianus, hereafter 'sage-grouse' populations are declining throughout sagebrush-steppe ecosystems in North America, particularly within the Great Basin, which heightens the need for novel management tools that maximize the use of available information.Herein, we improve upon existing species distribution models by combining information about sage-grouse habitat quality, distribution and abundance from multiple data sources. To measure habitat, we created spatially explicit maps depicting habitat selection indices (HSI) informed by >35 500 independent telemetry locations from >1600 sage-grouse collected over 15 years across much of the Great Basin. These indices were derived from models that accounted for selection at different spatial scales and seasons. A region-wide HSI was calculated using the HSI surfaces modelled for 12 independent subregions and then demarcated into distinct habitat quality classes.We also employed a novel index to describe landscape patterns of sage-grouse abundance and space use (AUI). The AUI is a probabilistic composite of the following: (i) breeding density patterns based on the spatial configuration of breeding leks and associated trends in male attendance; and (ii) year-round patterns of space use indexed by the decreasing probability of use with increasing distance to leks. The continuous AUI surface was then reclassified into two classes representing high and low/no use and abundance. Synthesis and applications. Using the example of sage-grouse, we demonstrate how the joint application of indices of habitat selection, abundance and space use derived from multiple data sources yields a composite map that can guide effective allocation of management intensity

  10. Studying the spatial distribution of interstellar dust

    NASA Technical Reports Server (NTRS)

    Walker, Helen J.; Werner, Michael W.; Allen, C.; Henry, R. C.; Kimble, R.; Wofford, J.; Murthy, Jayant

    1989-01-01

    The spacial distribution of interstellar dust reflects both interstellar dynamics and the processes which form and destroy dust in the interstellar medium (ISM). The IRAS survey, because of its high sensitivity to thermal emission from dust in the IR, provides new approaches to determining the spatial distribution of dust. The initial results are reported of an attempt to use the IRAS data to probe the spatial distribution of dust - by searching for thermal emission from dust in the vicinity of bright stars. These results show that this technique (which relies on finding IR emission associated with randomly selected stars) can ultimately be used to study the distribution of dust in the ISM. The density of the cloud producing the IR emission may be derived by assuming that the dust is at its projected distance from the star and that the heating is due to the star's (known) radiation field. The heating radiation is folded into a grain model, and the number of emitting grains adjusted to reproduce the observed energy distribution. It is noted that this technique is capable in principle of detecting dust densities much lower than those typical of the cirrus clouds.

  11. Predictive modelling of habitat selection by marine predators with respect to the abundance and depth distribution of pelagic prey.

    PubMed

    Boyd, Charlotte; Castillo, Ramiro; Hunt, George L; Punt, André E; VanBlaricom, Glenn R; Weimerskirch, Henri; Bertrand, Sophie

    2015-11-01

    Understanding the ecological processes that underpin species distribution patterns is a fundamental goal in spatial ecology. However, developing predictive models of habitat use is challenging for species that forage in marine environments, as both predators and prey are often highly mobile and difficult to monitor. Consequently, few studies have developed resource selection functions for marine predators based directly on the abundance and distribution of their prey. We analysed contemporaneous data on the diving locations of two seabird species, the shallow-diving Peruvian Booby (Sula variegata) and deeper diving Guanay Cormorant (Phalacrocorax bougainvilliorum), and the abundance and depth distribution of their main prey, Peruvian anchoveta (Engraulis ringens). Based on this unique data set, we developed resource selection functions to test the hypothesis that the probability of seabird diving behaviour at a given location is a function of the relative abundance of prey in the upper water column. For both species, we show that the probability of diving behaviour is mostly explained by the distribution of prey at shallow depths. While the probability of diving behaviour increases sharply with prey abundance at relatively low levels of abundance, support for including abundance in addition to the depth distribution of prey is weak, suggesting that prey abundance was not a major factor determining the location of diving behaviour during the study period. The study thus highlights the importance of the depth distribution of prey for two species of seabird with different diving capabilities. The results complement previous research that points towards the importance of oceanographic processes that enhance the accessibility of prey to seabirds. The implications are that locations where prey is predictably found at accessible depths may be more important for surface foragers, such as seabirds, than locations where prey is predictably abundant. Analysis of the relative

  12. A spatially explicit estimate of the prewhaling abundance of the endangered North Atlantic right whale.

    PubMed

    Monsarrat, Sophie; Pennino, M Grazia; Smith, Tim D; Reeves, Randall R; Meynard, Christine N; Kaplan, David M; Rodrigues, Ana S L

    2016-08-01

    The North Atlantic right whale (NARW) (Eubalaena glacialis) is one of the world's most threatened whales. It came close to extinction after nearly a millennium of exploitation and currently persists as a population of only approximately 500 individuals. Setting appropriate conservation targets for this species requires an understanding of its historical population size, as a baseline for measuring levels of depletion and progress toward recovery. This is made difficult by the scarcity of records over this species' long whaling history. We sought to estimate the preexploitation population size of the North Atlantic right whale and understand how this species was distributed across its range. We used a spatially explicit data set on historical catches of North Pacific right whales (NPRWs) (Eubalaena japonica) to model the relationship between right whale relative density and the environment during the summer feeding season. Assuming the 2 right whale species select similar environments, we projected this model to the North Atlantic to predict how the relative abundance of NARWs varied across their range. We calibrated these relative abundances with estimates of the NPRW total prewhaling population size to obtain high and low estimates for the overall NARW population size prior to exploitation. The model predicted 9,075-21,328 right whales in the North Atlantic. The current NARW population is thus <6% of the historical North Atlantic carrying capacity and has enormous potential for recovery. According to the model, in June-September NARWs concentrated in 2 main feeding areas: east of the Grand Banks of Newfoundland and in the Norwegian Sea. These 2 areas may become important in the future as feeding grounds and may already be used more regularly by this endangered species than is thought.

  13. The Abundance and Distribution of Presolar Materials in Cluster IDPS

    NASA Technical Reports Server (NTRS)

    Messenger, Scott; Keller, Lindsay; Nakamura-Messenger, Keiko; Ito, Motoo

    2007-01-01

    Presolar grains and remnants of interstellar organic compounds occur in a wide range of primitive solar system materials, including meteorites, interplanetary dust particles (IDPs), and comet Wild-2 samples. Among the most abundant presolar phases are silicate stardust grains and molecular cloud material. However, these materials have also been susceptible to destruction and alteration during parent body and nebular processing. In addition to their importance as direct samples of remote and ancient astrophysical environments, presolar materials thus provide a measure of how well different primitive bodies have preserved the original solar system starting materials. The matrix normalized abundances of presolar silicate grains in meteorites range from 20 ppm in Semarkona and Bishunpur to 170 ppm for Acfer 094. The lower abundances of presolar silicates in Bishunpur and Semarkona has been ascribed to the destruction of presolar silicates during aqueous processes. Presolar silicates appear to be significantly more abundant in anhydrous IDPs, possibly because these materials did not experience parent body hydrothermal alteration. Among IDPs the estimated abundances of presolar silicates vary by more than an order of magnitude, from 480 to 5500 ppm. The wide disparity in the abundances of presolar silicates of IDPs may be a consequence of the relatively small total area analyzed in those studies and the fine grain sizes of the IDPs. Alternatively, there may be a wide range in presolar silicate abundances between different IDPs. This view is supported by the observation that 15N-rich IDPs have higher presolar silicate abundances than those with isotopically normal N.

  14. Environmental distribution, abundance and activity of the Miscellaneous Crenarchaeotal Group

    NASA Astrophysics Data System (ADS)

    Lloyd, K. G.; Biddle, J.; Teske, A.

    2011-12-01

    Many marine sedimentary microbes have only been identified by 16S rRNA sequences. Consequently, little is known about the types of metabolism, activity levels, or relative abundance of these groups in marine sediments. We found that one of these uncultured groups, called the Miscellaneous Crenarchaeotal Group (MCG), dominated clone libraries made from reverse transcribed 16S rRNA, and 454 pyrosequenced 16S rRNA genes, in the White Oak River estuary. Primers suitable for quantitative PCR were developed for MCG and used to show that 16S rRNA DNA copy numbers from MCG account for nearly all the archaeal 16S rRNA genes present. RT-qPCR shows much less MCG rRNA than total archaeal rRNA, but comparisons of different primers for each group suggest bias in the RNA-based work relative to the DNA-based work. There is no evidence of a population shift with depth below the sulfate-methane transition zone, suggesting that the metabolism of MCG may not be tied to sulfur or methane cycles. We classified 2,771 new sequences within the SSU Silva 106 database that, along with the classified sequences in the Silva database was used to make an MCG database of 4,646 sequences that allowed us to increase the named subgroups of MCG from 7 to 19. Percent terrestrial sequences in each subgroup is positively correlated with percent of the marine sequences that are nearshore, suggesting that membership in the different subgroups is not random, but dictated by environmental selective pressures. Given their high phylogenetic diversity, ubiquitous distribution in anoxic environments, and high DNA copy number relative to total archaea, members of MCG are most likely anaerobic heterotrophs who are integral to the post-depositional marine carbon cycle.

  15. Revised spatially distributed global livestock emissions

    NASA Astrophysics Data System (ADS)

    Asrar, G.; Wolf, J.; West, T. O.

    2015-12-01

    Livestock play an important role in agricultural carbon cycling through consumption of biomass and emissions of methane. Quantification and spatial distribution of methane and carbon dioxide produced by livestock is needed to develop bottom-up estimates for carbon monitoring. These estimates serve as stand-alone international emissions estimates, as input to global emissions modeling, and as comparisons or constraints to flux estimates from atmospheric inversion models. Recent results for the US suggest that the 2006 IPCC default coefficients may underestimate livestock methane emissions. In this project, revised coefficients were calculated for cattle and swine in all global regions, based on reported changes in body mass, quality and quantity of feed, milk production, and management of living animals and manure for these regions. New estimates of livestock methane and carbon dioxide emissions were calculated using the revised coefficients and global livestock population data. Spatial distribution of population data and associated fluxes was conducted using the MODIS Land Cover Type 5, version 5.1 (i.e. MCD12Q1 data product), and a previously published downscaling algorithm for reconciling inventory and satellite-based land cover data at 0.05 degree resolution. Preliminary results for 2013 indicate greater emissions than those calculated using the IPCC 2006 coefficients. Global total enteric fermentation methane increased by 6%, while manure management methane increased by 38%, with variation among species and regions resulting in improved spatial distributions of livestock emissions. These new estimates of total livestock methane are comparable to other recently reported studies for the entire US and the State of California. These new regional/global estimates will improve the ability to reconcile top-down and bottom-up estimates of methane production as well as provide updated global estimates for use in development and evaluation of Earth system models.

  16. On the spatial distribution of fingerprint singularities.

    PubMed

    Cappelli, Raffaele; Maltoni, Davide

    2009-04-01

    Fingerprint singularities play an important role in several fingerprint recognition and classification systems. Although some general relationships and constraints about the location of singularities in the different fingerprint classes are well known, to the best of our knowledge no statistical models have been developed until now. This paper studies the spatial distributions of singularity locations in nature and derives, from a representative dataset of labelled samples, the probability density functions of the four main fingerprint classes. The results obtained can be directly exploited to improve the accuracy of many techniques relying on the position of singularities, as confirmed by the results of two experiments on fingerprint classification and synthesis.

  17. nirS-Encoding denitrifier community composition, distribution, and abundance along the coastal wetlands of China.

    PubMed

    Gao, Juan; Hou, Lijun; Zheng, Yanling; Liu, Min; Yin, Guoyu; Li, Xiaofei; Lin, Xianbiao; Yu, Chendi; Wang, Rong; Jiang, Xiaofen; Sun, Xiuru

    2016-10-01

    For the past few decades, human activities have intensively increased the reactive nitrogen enrichment in China's coastal wetlands. Although denitrification is a critical pathway of nitrogen removal, the understanding of denitrifier community dynamics driving denitrification remains limited in the coastal wetlands. In this study, the diversity, abundance, and community composition of nirS-encoding denitrifiers were analyzed to reveal their variations in China's coastal wetlands. Diverse nirS sequences were obtained and more than 98 % of them shared considerable phylogenetic similarity with sequences obtained from aquatic systems (marine/estuarine/coastal sediments and hypoxia sea water). Clone library analysis revealed that the distribution and composition of nirS-harboring denitrifiers had a significant latitudinal differentiation, but without a seasonal shift. Canonical correspondence analysis showed that the community structure of nirS-encoding denitrifiers was significantly related to temperature and ammonium concentration. The nirS gene abundance ranged from 4.3 × 10(5) to 3.7 × 10(7) copies g(-1) dry sediment, with a significant spatial heterogeneity. Among all detected environmental factors, temperature was a key factor affecting not only the nirS gene abundance but also the community structure of nirS-type denitrifiers. Overall, this study significantly enhances our understanding of the structure and dynamics of denitrifying communities in the coastal wetlands of China.

  18. The Potential for Spatial Distribution Indices to Signal Thresholds in Marine Fish Biomass

    PubMed Central

    Reuchlin-Hugenholtz, Emilie

    2015-01-01

    The frequently observed positive relationship between fish population abundance and spatial distribution suggests that changes in distribution can be indicative of trends in abundance. If contractions in spatial distribution precede declines in spawning stock biomass (SSB), spatial distribution reference points could complement the SSB reference points that are commonly used in marine conservation biology and fisheries management. When relevant spatial distribution information is integrated into fisheries management and recovery plans, risks and uncertainties associated with a plan based solely on the SSB criterion would be reduced. To assess the added value of spatial distribution data, we examine the relationship between SSB and four metrics of spatial distribution intended to reflect changes in population range, concentration, and density for 10 demersal populations (9 species) inhabiting the Scotian Shelf, Northwest Atlantic. Our primary purpose is to assess their potential to serve as indices of SSB, using fisheries independent survey data. We find that metrics of density offer the best correlate of spawner biomass. A decline in the frequency of encountering high density areas is associated with, and in a few cases preceded by, rapid declines in SSB in 6 of 10 populations. Density-based indices have considerable potential to serve both as an indicator of SSB and as spatially based reference points in fisheries management. PMID:25789624

  19. Spatial and temporal variation in enterococcal abundance and its relationship to the microbial community in Hawaii beach sand and water.

    PubMed

    Cui, Henglin; Yang, Kun; Pagaling, Eulyn; Yan, Tao

    2013-06-01

    Recent studies have reported high levels of fecal indicator enterococci in marine beach sand. This study aimed to determine the spatial and temporal variation of enterococcal abundance and to evaluate its relationships with microbial community parameters in Hawaii beach sand and water. Sampling at 23 beaches on the Island of Oahu detected higher levels of enterococci in beach foreshore sand than in beach water on a mass unit basis. Subsequent 8-week consecutive samplings at two selected beaches (Waialae and Kualoa) consistently detected significantly higher levels of enterococci in backshore sand than in foreshore/nearshore sand and beach water. Comparison between the abundance of enterococci and the microbial communities showed that enterococci correlated significantly with total Vibrio in all beach zones but less significantly with total bacterial density and Escherichia coli. Samples from the different zones of Waialae beach were sequenced by 16S rRNA gene pyrosequencing to determine the microbial community structure and diversity. The backshore sand had a significantly more diverse community and contained different major bacterial populations than the other beach zones, which corresponded to the spatial distribution pattern of enterococcal abundance. Taken together, multiple lines of evidence support the possibility of enterococci as autochthonous members of the microbial community in Hawaii beach sand.

  20. Spatial and Temporal Variation in Enterococcal Abundance and Its Relationship to the Microbial Community in Hawaii Beach Sand and Water

    PubMed Central

    Cui, Henglin; Yang, Kun; Pagaling, Eulyn

    2013-01-01

    Recent studies have reported high levels of fecal indicator enterococci in marine beach sand. This study aimed to determine the spatial and temporal variation of enterococcal abundance and to evaluate its relationships with microbial community parameters in Hawaii beach sand and water. Sampling at 23 beaches on the Island of Oahu detected higher levels of enterococci in beach foreshore sand than in beach water on a mass unit basis. Subsequent 8-week consecutive samplings at two selected beaches (Waialae and Kualoa) consistently detected significantly higher levels of enterococci in backshore sand than in foreshore/nearshore sand and beach water. Comparison between the abundance of enterococci and the microbial communities showed that enterococci correlated significantly with total Vibrio in all beach zones but less significantly with total bacterial density and Escherichia coli. Samples from the different zones of Waialae beach were sequenced by 16S rRNA gene pyrosequencing to determine the microbial community structure and diversity. The backshore sand had a significantly more diverse community and contained different major bacterial populations than the other beach zones, which corresponded to the spatial distribution pattern of enterococcal abundance. Taken together, multiple lines of evidence support the possibility of enterococci as autochthonous members of the microbial community in Hawaii beach sand. PMID:23563940

  1. Spatial Distribution of Soil Fauna In Long Term No Tillage

    NASA Astrophysics Data System (ADS)

    Corbo, J. Z. F.; Vieira, S. R.; Siqueira, G. M.

    2012-04-01

    The soil is a complex system constituted by living beings, organic and mineral particles, whose components define their physical, chemical and biological properties. Soil fauna plays an important role in soil and may reflect and interfere in its functionality. These organisms' populations may be influenced by management practices, fertilization, liming and porosity, among others. Such changes may reduce the composition and distribution of soil fauna community. Thus, this study aimed to determine the spatial variability of soil fauna in consolidated no-tillage system. The experimental area is located at Instituto Agronômico in Campinas (São Paulo, Brazil). The sampling was conducted in a Rhodic Eutrudox, under no tillage system and 302 points distributed in a 3.2 hectare area in a regular grid of 10.00 m x 10.00 m were sampled. The soil fauna was sampled with "Pitfall Traps" method and traps remained in the area for seven days. Data were analyzed using descriptive statistics to determine the main statistical moments (mean variance, coefficient of variation, standard deviation, skewness and kurtosis). Geostatistical tools were used to determine the spatial variability of the attributes using the experimental semivariogram. For the biodiversity analysis, Shannon and Pielou indexes and richness were calculated for each sample. Geostatistics has proven to be a great tool for mapping the spatial variability of groups from the soil epigeal fauna. The family Formicidae proved to be the most abundant and dominant in the study area. The parameters of descriptive statistics showed that all attributes studied showed lognormal frequency distribution for groups from the epigeal soil fauna. The exponential model was the most suited for the obtained data, for both groups of epigeal soil fauna (Acari, Araneae, Coleoptera, Formicidae and Coleoptera larva), and the other biodiversity indexes. The sampling scheme (10.00 m x 10.00 m) was not sufficient to detect the spatial

  2. Spatial distribution of precipitation extremes in Norway

    NASA Astrophysics Data System (ADS)

    Verpe Dyrrdal, Anita; Skaugen, Thomas; Lenkoski, Alex; Thorarinsdottir, Thordis; Stordal, Frode; Førland, Eirik J.

    2015-04-01

    Estimates of extreme precipitation, in terms of return levels, are crucial in planning and design of important infrastructure. Through two separate studies, we have examined the levels and spatial distribution of daily extreme precipitation over catchments in Norway, and hourly extreme precipitation in a point. The analyses were carried out through the development of two new methods for estimating extreme precipitation in Norway. For daily precipitation we fit the Generalized Extreme Value (GEV) distribution to areal time series from a gridded dataset, consisting of daily precipitation during the period 1957-today with a resolution of 1x1 km². This grid-based method is more objective and less manual and time-consuming compared to the existing method at MET Norway. In addition, estimates in ungauged catchments are easier to obtain, and the GEV approach includes a measure of uncertainty, which is a requirement in climate studies today. Further, we go into depth on the debated GEV shape parameter, which plays an important role for longer return periods. We show that it varies according to dominating precipitation types, having positive values in the southeast and negative values in the southwest. We also find indications that the degree of orographic enhancement might affect the shape parameter. For hourly precipitation, we estimate return levels on a 1x1 km² grid, by linking GEV distributions with latent Gaussian fields in a Bayesian hierarchical model (BHM). Generalized linear models on the GEV parameters, estimated from observations, are able to incorporate location-specific geographic and meteorological information and thereby accommodate these effects on extreme precipitation. Gaussian fields capture additional unexplained spatial heterogeneity and overcome the sparse grid on which observations are collected, while a Bayesian model averaging component directly assesses model uncertainty. We find that mean summer precipitation, mean summer temperature, latitude

  3. A hierarchical spatial model of avian abundance with application to Cerulean Warblers

    USGS Publications Warehouse

    Thogmartin, Wayne E.; Sauer, John R.; Knutson, Melinda G.

    2004-01-01

    Surveys collecting count data are the primary means by which abundance is indexed for birds. These counts are confounded, however, by nuisance effects including observer effects and spatial correlation between counts. Current methods poorly accommodate both observer and spatial effects because modeling these spatially autocorrelated counts within a hierarchical framework is not practical using standard statistical approaches. We propose a Bayesian approach to this problem and provide as an example of its implementation a spatial model of predicted abundance for the Cerulean Warbler (Dendroica cerulea) in the Prairie-Hardwood Transition of the upper midwestern United States. We used an overdispersed Poisson regression with fixed and random effects, fitted by Markov chain Monte Carlo methods. We used 21 years of North American Breeding Bird Survey counts as the response in a loglinear function of explanatory variables describing habitat, spatial relatedness, year effects, and observer effects. The model included a conditional autoregressive term representing potential correlation between adjacent route counts. Categories of explanatory habitat variables in the model included land cover composition and configuration, climate, terrain heterogeneity, and human influence. The inherent hierarchy in the model was from counts occurring, in part, as a function of observers within survey routes within years. We found that the percentage of forested wetlands, an index of wetness potential, and an interaction between mean annual precipitation and deciduous forest patch size best described Cerulean Warbler abundance. Based on a map of relative abundance derived from the posterior parameter estimates, we estimated that only 15% of the species' population occurred on federal land, necessitating active engagement of public landowners and state agencies in the conservation of the breeding habitat for this species. Models of this type can be applied to any data in which the response

  4. Determinants of distribution and abundance of two shrub species, Guiera senegalensis and Piliostigma reticulatum, in Peanut Basin, Senegal

    NASA Astrophysics Data System (ADS)

    Lufafa, A.; Diédhiou, I.; Ndiaye, N.; Kizito, F.; Dick, R.; Noller, J. S.

    2005-05-01

    The ability to predict and manage the course of landscape-level ecological change and its longer-term consequences on ecosystem functions (e.g. carbon stabilization and soil degradation mitigation) depends on the ability to understand how a particular ecosystem functions and the mechanisms that control the distribution, configuration and abundance of key species. Guiera senegalensis and Piliostigma reticulatum are two native shrub species that are widely found in Sub-Saharan Africa but unrecognized in their potential role in regulating hydrological and carbon cycles in both natural and agro-ecosystems. Our objective was to conduct a study on the determinants of landscape-level distribution and abundance of these shrub species as a basis for ecological modeling and management of this fragile semiarid environment. Formal Recursive Inference Modeling was used to adduce determinants of species presence while logistic regression and geostatistical approaches were used to estimate shrub abundance within their communities. The results showed that distribution of the shrubs is controlled by four factors: geological substrate, mean annual temperature, mean annual rainfall and landform (profile convexity). Relative abundance within the shrub communities is under the influence of mean annual rainfall, maximum annual temperature and elevation (for G. senegalensis) and mean annual rainfall, mean annual temperature, elevation and landform (profile convexity) (for P. reticulatum). Predictive models for shrub distribution and abundance were generally poor, probably highlighting the weakness of statistical models in analysis and quantification of the spatial structure of ecosystems.

  5. Spatial variability of Chinook salmon spawning distribution and habitat preferences

    USGS Publications Warehouse

    Cram, Jeremy M.; Torgersen, Christian; Klett, Ryan S.; Pess, George R.; May, Darran; Pearsons, Todd N.; Dittman, Andrew H.

    2017-01-01

    We investigated physical habitat conditions associated with the spawning sites of Chinook Salmon Oncorhynchus tshawytscha and the interannual consistency of spawning distribution across multiple spatial scales using a combination of spatially continuous and discrete sampling methods. We conducted a census of aquatic habitat in 76 km of the upper main-stem Yakima River in Washington and evaluated spawning site distribution using redd survey data from 2004 to 2008. Interannual reoccupation of spawning areas was high, ranging from an average Pearson’s correlation of 0.62 to 0.98 in channel subunits and 10-km reaches, respectively. Annual variance in the interannual correlation of spawning distribution was highest in channel units and subunits, but it was low at reach scales. In 13 of 15 models developed for individual years (2004–2008) and reach lengths (800 m, 3 km, 6 km), stream power and depth were the primary predictors of redd abundance. Multiple channels and overhead cover were patchy but were important secondary and tertiary predictors of reach-scale spawning site selection. Within channel units and subunits, pool tails and thermal variability, which may be associated with hyporheic exchange, were important predictors of spawning. We identified spawning habitat preferences within reaches and channel units that are relevant for salmonid habitat restoration planning. We also identified a threshold (i.e., 2-km reaches) beyond which interannual spawning distribution was markedly consistent, which may be informative for prioritizing habitat restoration or conservation. Management actions may be improved through enhanced understanding of spawning habitat preferences and the consistency with which Chinook Salmon reoccupy spawning areas at different spatial scales.

  6. Comparing Amino Acid Abundances and Distributions Across Carbonaceous Chondrite Groups

    NASA Technical Reports Server (NTRS)

    Burton, Aaron S.; Callahan, Michael P.; Glavin, Daniel P.; Elsila, Jamie E.; Dworkin, Jason P.

    2012-01-01

    Meteorites are grouped according to bulk properties such as chemical composition and mineralogy. These parameters can vary significantly among the different carbonaceous chondrite groups (CI, CM, CO, CR, CH, CB, CV and CK). We have determined the amino acid abundances of more than 30 primary amino acids in meteorites from each of the eight groups, revealing several interesting trends. There are noticeable differences in the structural diversity and overall abundances of amino acids between meteorites from the different chondrite groups. Because meteorites may have been an important source of amino acids to the prebiotic Earth and these organic compounds are essential for life as we know it, the observed variations of these molecules may have been important for the origins of life.

  7. The distribution and abundance of interstellar C2H

    NASA Technical Reports Server (NTRS)

    Huggins, P. J.; Carlson, W. J.; Kinney, A. L.

    1984-01-01

    C2H(N = 1-0) emission has been extensively observed in a variety of molecular clouds, including: 12 hot, dense, cloud cores, 3 bright-rimmed clouds (in NGC 1977, IC 1396, and IC 1848), and across the extended OMC - 1 cloud. It has also been observed in the circumstellar envelopes IRC + 10216 and AFGL 2688. Abundance analyses of the molecular clouds yield C2H/(C-13)O abundance ratios of about 0.01, with little variation (less than about a factor of 4) either between clouds or across individual clouds. In the Orion plateau source, the C2H abundance is enhanced by less than a factor of 4, relative to the extended cloud. The generally high levels of C2H found in the molecular clouds are not readily accounted for by simple, steady-state chemical models, and suggest, as do earlier observations of atomic carbon, that the carbon chemistry in dense clouds is more active than is commonly assumed.

  8. Fossil Signatures Using Elemental Abundance Distributions and Bayesian Probabilistic Classification

    NASA Technical Reports Server (NTRS)

    Hoover, Richard B.; Storrie-Lombardi, Michael C.

    2004-01-01

    Elemental abundances (C6, N7, O8, Na11, Mg12, Al3, P15, S16, Cl17, K19, Ca20, Ti22, Mn25, Fe26, and Ni28) were obtained for a set of terrestrial fossils and the rock matrix surrounding them. Principal Component Analysis extracted five factors accounting for the 92.5% of the data variance, i.e. information content, of the elemental abundance data. Hierarchical Cluster Analysis provided unsupervised sample classification distinguishing fossil from matrix samples on the basis of either raw abundances or PCA input that agreed strongly with visual classification. A stochastic, non-linear Artificial Neural Network produced a Bayesian probability of correct sample classification. The results provide a quantitative probabilistic methodology for discriminating terrestrial fossils from the surrounding rock matrix using chemical information. To demonstrate the applicability of these techniques to the assessment of meteoritic samples or in situ extraterrestrial exploration, we present preliminary data on samples of the Orgueil meteorite. In both systems an elemental signature produces target classification decisions remarkably consistent with morphological classification by a human expert using only structural (visual) information. We discuss the possibility of implementing a complexity analysis metric capable of automating certain image analysis and pattern recognition abilities of the human eye using low magnification optical microscopy images and discuss the extension of this technique across multiple scales.

  9. Artemia parthenogenetica (Branchiopoda: Anostraca) from the Large Aral Sea: Abundance, distribution, population structure and cyst production

    NASA Astrophysics Data System (ADS)

    Arashkevich, Elena G.; Sapozhnikov, P. V.; Soloviov, K. A.; Kudyshkin, T. V.; Zavialov, P. O.

    2009-03-01

    The brine shrimp Artemia parthenogenetica appeared in the Large Aral Sea (Central Asia) in 1998 when mineralization reached 63 ppt. Data on Artemia abundance and biomass, along with temperature and salinity measurements were collected in the western basin during 2002-2006, primarily in the autumn. During the study period, population density grew progressively, both in terms of number, from 250 to 1260 individuals per m 3, and in terms of biomass, from 0.3 to 1.3 g per m 3. In 2005, the population density and spatial distribution in the different parts of the sea (western and eastern basins and strait) was assessed. The horizontal distribution of the Artemia population was uniform in the deep central part of the western basin, although the distribution was quite patchy in the shallow coastal zone. Depth habitat of Artemia was restricted to the upper 20-25 m of depth, as the oxygen depletion and formation of anoxic layer prevented distribution of Artemia to the deeper waters. In autumn, all females reproduced oviparously, with an average clutch size of 30-35 eggs per female. The number of eggs in a clutch was positively correlated with female body length ( r2 = 0.36-0.44).

  10. Spatial distribution of disease: three case studies.

    PubMed

    Selvin, S; Shaw, G; Schulman, J; Merrill, D W

    1987-09-01

    Maps transformed so as to have constant density of residential population were used to analyze the spatial distribution of disease in three specific areas. Each area had received recent attention because of suspected environmental pollution. The area adjacent to the Rocky Flats Facility (CO) was examined to identify any association between possible plutonium releases and increases in lung cancer or leukemia incidence. The industrial area of northern Contra Costa County (CA) was studied to explore a relationship between petrochemical industrial emissions and histologic-specific lung cancers. Finally, a suspected increase in the risk of congenital cardiac defects possibly related to pollution of the Santa Clara County (CA) water supply was investigated. No evidence of elevated risk of disease was found to be associated with either the Rocky Flats Facility or the polluted water of Santa Clara County. An increase in lung cancer, found by other investigators in earlier years, was shown to persist in association with industrial emissions in Contra Costa County.

  11. Spatial distribution of disease: three case studies

    SciTech Connect

    Selvin, S.; Shaw, G.; Schulman, J.; Merrill, D.W.

    1987-09-01

    Maps transformed so as to have constant density of residential population were used to analyze the spatial distribution of disease in three specific areas. Each area had received recent attention because of suspected environmental pollution. The area adjacent to the Rocky Flats Facility (CO) was examined to identify any association between possible plutonium releases and increases in lung cancer or leukemia incidence. The industrial area of northern Contra Costa County (CA) was studied to explore a relationship between petrochemical industrial emissions and histologic-specific lung cancers. Finally, a suspected increase in the risk of congenital cardiac defects possibly related to pollution of the Santa Clara County (CA) water supply was investigated. No evidence of elevated risk of disease was found to be associated with either the Rocky Flats Facility or the polluted water of Santa Clara County. An increase in lung cancer, found by other investigators in earlier years, was shown to persist in association with industrial emissions in Contra Costa County.

  12. Method for spatially distributing a population

    DOEpatents

    Bright, Edward A [Knoxville, TN; Bhaduri, Budhendra L [Knoxville, TN; Coleman, Phillip R [Knoxville, TN; Dobson, Jerome E [Lawrence, KS

    2007-07-24

    A process for spatially distributing a population count within a geographically defined area can include the steps of logically correlating land usages apparent from a geographically defined area to geospatial features in the geographically defined area and allocating portions of the population count to regions of the geographically defined area having the land usages, according to the logical correlation. The process can also include weighing the logical correlation for determining the allocation of portions of the population count and storing the allocated portions within a searchable data store. The logically correlating step can include the step of logically correlating time-based land usages to geospatial features of the geographically defined area. The process can also include obtaining a population count for the geographically defined area, organizing the geographically defined area into a plurality of sectors, and verifying the allocated portions according to direct observation.

  13. Optimal design of spatial distribution networks

    NASA Astrophysics Data System (ADS)

    Gastner, Michael T.; Newman, M. E. J.

    2006-07-01

    We consider the problem of constructing facilities such as hospitals, airports, or malls in a country with a nonuniform population density, such that the average distance from a person’s home to the nearest facility is minimized. We review some previous approximate treatments of this problem that indicate that the optimal distribution of facilities should have a density that increases with population density, but does so slower than linearly, as the two-thirds power. We confirm this result numerically for the particular case of the United States with recent population data using two independent methods, one a straightforward regression analysis, the other based on density-dependent map projections. We also consider strategies for linking the facilities to form a spatial network, such as a network of flights between airports, so that the combined cost of maintenance of and travel on the network is minimized. We show specific examples of such optimal networks for the case of the United States.

  14. The abundance and age distributions of 500 F stars in the solar neighbourhood

    NASA Technical Reports Server (NTRS)

    Clegg, R. E. S.; Bell, R. A.

    1973-01-01

    The uvby catalog of Perry has been used, in conjunction with theoretical uvby colors and stellar evolutionary tracks, to obtain the metal abundance distribution and age distribution of F and G type dwarf stars within 100 pc of the sun. Eighty-three per cent of stars with spectral type F5-G2 have metal content within a factor of 2.5 of the solar abundance, and only 2% have less than one-quarter the solar abundance. The metal abundance distribution, which contains more metal-rich stars than found in previous investigations of F and G dwarfs, has also been compared with the observed metal abundance distribution of G and K giants and the model galaxy calculations of Truran and Cameron (1971). A comparison of the age distribution with evolutionary calculations implies that the rate of star formation in the galaxy may not have decreased by a large factor in the last 10 billion years.

  15. Post-Fire Spatial Patterns of Soil Nitrogen Mineralization and Microbial Abundance

    PubMed Central

    Smithwick, Erica A. H.; Naithani, Kusum J.; Balser, Teri C.; Romme, William H.; Turner, Monica G.

    2012-01-01

    Stand-replacing fires influence soil nitrogen availability and microbial community composition, which may in turn mediate post-fire successional dynamics and nutrient cycling. However, fires create patchiness at both local and landscape scales and do not result in consistent patterns of ecological dynamics. The objectives of this study were to (1) quantify the spatial structure of microbial communities in forest stands recently affected by stand-replacing fire and (2) determine whether microbial variables aid predictions of in situ net nitrogen mineralization rates in recently burned stands. The study was conducted in lodgepole pine (Pinus contorta var. latifolia) and Engelmann spruce/subalpine fir (Picea engelmannii/Abies lasiocarpa) forest stands that burned during summer 2000 in Greater Yellowstone (Wyoming, USA). Using a fully probabilistic spatial process model and Bayesian kriging, the spatial structure of microbial lipid abundance and fungi-to-bacteria ratios were found to be spatially structured within plots two years following fire (for most plots, autocorrelation range varied from 1.5 to 10.5 m). Congruence of spatial patterns among microbial variables, in situ net N mineralization, and cover variables was evident. Stepwise regression resulted in significant models of in situ net N mineralization and included variables describing fungal and bacterial abundance, although explained variance was low (R2<0.29). Unraveling complex spatial patterns of nutrient cycling and the biotic factors that regulate it remains challenging but is critical for explaining post-fire ecosystem function, especially in Greater Yellowstone, which is projected to experience increased fire frequencies by mid 21st Century. PMID:23226324

  16. The Abundance and Distribution of Presolar Materials in Cluster IDPS

    NASA Technical Reports Server (NTRS)

    Messenger, Scott; Keller, Lindsay; Nakamura-Messenger, Keiko; Ito, Motoo

    2007-01-01

    Presolar grains and remnants of interstellar organic compounds occur in a wide range of primitive solar system materials, including meteorites, interplanetary dust particles (IDPs), and comet Wild-2 samples. Among the most abundant presolar phases are silicate stardust grains and molecular cloud material. However, these materials have also been susceptible to destruction and alteration during parent body and nebular processing. In addition to their importance as direct samples of remote and ancient astrophysical environments, presolar materials thus provide a measure of how well different primitive bodies have preserved the original solar system starting materials.

  17. Spatial distribution of environmental DNA in a nearshore marine habitat

    PubMed Central

    Kelly, Ryan P.; Shelton, Andrew Olaf; Samhouri, Jameal F.; Lowell, Natalie C.; Williams, Gregory D.

    2017-01-01

    In the face of increasing threats to biodiversity, the advancement of methods for surveying biological communities is a major priority for ecologists. Recent advances in molecular biological technologies have made it possible to detect and sequence DNA from environmental samples (environmental DNA or eDNA); however, eDNA techniques have not yet seen widespread adoption as a routine method for biological surveillance primarily due to gaps in our understanding of the dynamics of eDNA in space and time. In order to identify the effective spatial scale of this approach in a dynamic marine environment, we collected marine surface water samples from transects ranging from the intertidal zone to four kilometers from shore. Using PCR primers that target a diverse assemblage of metazoans, we amplified a region of mitochondrial 16S rDNA from the samples and sequenced the products on an Illumina platform in order to detect communities and quantify their spatial patterns using a variety of statistical tools. We find evidence for multiple, discrete eDNA communities in this habitat, and show that these communities decrease in similarity as they become further apart. Offshore communities tend to be richer but less even than those inshore, though diversity was not spatially autocorrelated. Taxon-specific relative abundance coincided with our expectations of spatial distribution in taxa lacking a microscopic, pelagic life-history stage, though most of the taxa detected do not meet these criteria. Finally, we use carefully replicated laboratory procedures to show that laboratory treatments were remarkably similar in most cases, while allowing us to detect a faulty replicate, emphasizing the importance of replication to metabarcoding studies. While there is much work to be done before eDNA techniques can be confidently deployed as a standard method for ecological monitoring, this study serves as a first analysis of diversity at the fine spatial scales relevant to marine ecologists

  18. Spatial Analysis of Spectra from Galactic Planetary Nebulae and Extragalactic H II Regions: Testing for Abundance Variations

    NASA Astrophysics Data System (ADS)

    Miller, Timothy R.

    2017-01-01

    Presented here is a spatial analysis of spectra for seven planetary nebulae (NGC 2440, NGC 3242, NGC 5315, NGC 5882, NGC 7662, IC 2165, and IC 3568) as well as H II regions from six nearly face-on, spiral galaxies (NGC 2403, NGC 3310, NGC 4321, NGC 5194, NGC 5236, and NGC 5457). The two main goals of the study were (1) to investigate whether or not each planetary nebula (PN) is chemically homogeneous; and (2) to search for evidence of azimuthal abundance gradients in the disks of the galaxies. Each of these test the validity of assumptions commonly made for these two object types, i.e., (1) Ejecta from asymptotic giant branch stars are well mixed and (2) elements returned to the interstellar medium of a spiral galaxy are “instantaneously” distributed around the disk for a fixed distance from the center.The PN homogeneity problem was addressed by spatially dividing each long-slit HST/STIS spectrum into many smaller regions across each object and calculating the abundances of each region. The major result is that the ejecta are indeed homogeneous in each planetary nebula for the elements probed. A secondary goal was to constrain the temperature and luminosity of each PN central star, which was accomplished by modeling each object using the photoionization code CLOUDY.The spectra for the galaxies are from the VIRUS-P spectrograph, an integral field unit consisting of 246 fibers arranged in a square, with the observations centered on or near the nuclear bulge, covering a full 360 degrees around each galaxy and encompassing numerous H II regions located near the bulge. Additional goals for each galaxy included obtaining radial abundance gradients and accurate carbon and neon abundances for high metallicity H II regions.

  19. Spatial Distribution of Large Cloud Drops

    NASA Technical Reports Server (NTRS)

    Marshak, A.; Knyazikhin, Y.; Larsen, M.; Wiscombe, W.

    2004-01-01

    By analyzing aircraft measurements of individual drop sizes in clouds, we have shown in a companion paper (Knyazikhin et al., 2004) that the probability of finding a drop of radius r at a linear scale l decreases as l(sup D(r)) where 0 less than or equal to D(r) less than or equal to 1. This paper shows striking examples of the spatial distribution of large cloud drops using models that simulate the observed power laws. In contrast to currently used models that assume homogeneity and therefore a Poisson distribution of cloud drops, these models show strong drop clustering, the more so the larger the drops. The degree of clustering is determined by the observed exponents D(r). The strong clustering of large drops arises naturally from the observed power-law statistics. This clustering has vital consequences for rain physics explaining how rain can form so fast. It also helps explain why remotely sensed cloud drop size is generally biased and why clouds absorb more sunlight than conventional radiative transfer models predict.

  20. GIS characterization of spatially distributed lifeline damage

    USGS Publications Warehouse

    Toprak, Selcuk; O'Rourke, Thomas; Tutuncu, Ilker

    1999-01-01

    This paper describes the visualization of spatially distributed water pipeline damage following an earthquake using geographical information systems (GIS). Pipeline damage is expressed as a repair rate (RR). Repair rate contours are developed with GIS by dividing the study area into grid cells (n ?? n), determining the number of particular pipeline repairs in each grid cell, and dividing the number of repairs by the length of that pipeline in each cell area. The resulting contour plot is a two-dimensional visualization of point source damage. High damage zones are defined herein as areas with an RR value greater than the mean RR for the entire study area of interest. A hyperbolic relationship between visual display of high pipeline damage zones and grid size, n, was developed. The relationship is expressed in terms of two dimensionless parameters, threshold area coverage (TAC) and dimensionless grid size (DGS). The relationship is valid over a wide range of different map scales spanning approximately 1,200 km2 for the largest portion of the Los Angeles water distribution system to 1 km2 for the Marina in San Francisco. This relationship can aid GIS users to get sufficiently refined, but easily visualized, maps of damage patterns.

  1. Distribution, abundance and benthic-pelagic coupling of suspended hydroids on Georges Bank1, 2

    NASA Astrophysics Data System (ADS)

    Concelman, Stephanie; Bollens, Stephen M.; Sullivan, Barbara K.; Madin, Laurence P.; Horgan, Erich; Butler, Mari; van Keuren, Donna

    Clytia spp. hydroids (Phylum Cnidaria), typically attached to a substrate during their asexual, polyp stage, have been found in significant numbers within the mesozooplankton on Georges Bank, North Atlantic Ocean. We examined unpublished historical records of the 1939-1941 cruises of the R/V Atlantis and obtained samples at four-study sites on Georges Bank in June/July 1995 in an attempt to (1) quantify the planktonic and benthic distributions of hydroids on Georges Bank, and (2) determine the coupling between benthic and pelagic habitats of this population. We found that planktonic hydroids have a patchy distribution, varying both spatially and temporally (most abundant in summer months, absent in winter). In 1939-1941 the planktonic hydroids were most broadly distributed following a spring (1940) with strong wind events; hydroids were absent from all samples in 1941. In 1995 we found the highest abundance of planktonic Clytia spp. hydroids (6213.5±1343.6 hydranths m -3) in the central crest of the bank, "downstream" in the Georges Bank circulation pattern from sites along the northeast peak of the Bank where large populations of benthic Clytia spp. hydroids were found (up to 6465 hydranths m -2). Our plankton sampling did not show significant numbers of hydroids in the water column at the Northeast peak sites, indicating that large numbers of planktonic hydroids are not being introduced into the Bank's circulation patterns from off-Bank sites to the northeast (e.g. Scotian shelf). The source population for planktonic hydroids found in the central region of the Bank is most likely the benthic habitats on the northeast peak of the Bank. We hypothesize, and our limited data suggest, that hydroids are detached from the benthos by storm action or other disturbance, advected clockwise with the mean residual circulation, and concentrated and retained in the central, low-advective region of the Bank.

  2. Distribution and abundance of nesting ospreys in the United States

    USGS Publications Warehouse

    Henny, C.J.

    1983-01-01

    Nesting Ospreys (Pandion haliaetus) in the contiguous United States now number about 8,000 pairs. Five regional populations exist (in order of abundance): Atlantic Coast, Florida and Gulf Coast, Pacific Northwest, Western Interior, and Great Lakes. Pesticides severely impacted the populations in the northern portion of the Atlantic Coast (Boston to Cape May) and the Great Lakes, but both are now recovering. During recent years in the west, especially in the Western Interior, reservoirs have been responsible for a range expansion and, perhaps, a population increase. However, a strong fidelity to ancestral breeding areas (short dispersal distance) has slowed the range expansion. Unique introductions to distant reservoirs (from breeding populations) are now being made and followed with intense interest. Ospreys adapted to man, his structures, and many of his habitat changes, but proved sensitive to his chemical pollutants. These characteristics make the Osprey an excellent environmental indicator species.

  3. The spatial distribution of Mustelidae in France.

    PubMed

    Calenge, Clément; Chadoeuf, Joël; Giraud, Christophe; Huet, Sylvie; Julliard, Romain; Monestiez, Pascal; Piffady, Jérémy; Pinaud, David; Ruette, Sandrine

    2015-01-01

    We estimated the spatial distribution of 6 Mustelidae species in France using the data collected by the French national hunting and wildlife agency under the "small carnivorous species logbooks" program. The 1500 national wildlife protection officers working for this agency spend 80% of their working time traveling in the spatial area in which they have authority. During their travels, they occasionally detect dead or living small and medium size carnivorous animals. Between 2002 and 2005, each car operated by this agency was equipped with a logbook in which officers recorded information about the detected animals (species, location, dead or alive, date). Thus, more than 30000 dead or living animals were detected during the study period. Because a large number of detected animals in a region could have been the result of a high sampling pressure there, we modeled the number of detected animals as a function of the sampling effort to allow for unbiased estimation of the species density. For dead animals -- mostly roadkill -- we supposed that the effort in a given region was proportional to the distance traveled by the officers. For living animals, we had no way to measure the sampling effort. We demonstrated that it was possible to use the whole dataset (dead and living animals) to estimate the following: (i) the relative density -- i.e., the density multiplied by an unknown constant -- of each species of interest across the different French agricultural regions, (ii) the sampling effort for living animals for each region, and (iii) the relative detection probability for various species of interest.

  4. High Spatial Resolution Isotopic Abundance Measurements by Secondary Ion Mass Spectrometry: Status and Prospects

    NASA Astrophysics Data System (ADS)

    McKeegan, K. D.

    2007-12-01

    Secondary Ion Mass Spectrometry, SIMS or ion microprobe analysis, has become an important tool for geochemistry because of its ability study the distributions of elemental and isotopic abundances in situ on polished samples with high (typically a few microns to sub-micron) spatial resolution. In addition, SIMS exhibits high sensitivity for a wide range of elements (H to Pu) so that isotope analyses can sometimes be performed for elements that comprise only trace quantities of some mineral phase (e.g., Pb in zircon) or on major and/or minor elements in very small samples (e.g., presolar dust grains). Offsetting these positive attributes are analytical difficulties due to the complexity of the sputtering source of analyte ions: (1) relatively efficient production of molecular ion species (especially from a complex matrix such as most natural minerals) that cause interferences at the same nominal mass as atomic ions of interest, and (2) quantitation problems caused by variations in the ionization efficiencies of different elements and/or isotopes depending upon the chemical state of the sample surface during sputtering--the so-called "matrix effects". Despite the availability of high mass resolution instruments (e.g., SHRIMP II/RG, CAMECA 1270/1280/NanoSIMS), the molecular ion interferences effectively limit the region of the mass table that can be investigated in most samples to isotope systems at Ni or lighter or at Os or heavier. The matrix effects and the sensitivity of instrumental mass discrimination to the physical state of the sample surface can hamper reproducibility and have contributed to a view that SIMS analyses, especially for so- called stable isotopes, are most appropriate for extraterrestrial samples which are often small, rare, and can exhibit large magnitude isotopic effects. Recent improvements in instrumentation and technique have extended the scope of SIMS isotopic analyses and applications now range from geochronology to paleoclimatology to

  5. Predicting regional abundance of rare grassland birds with a hierarchical spatial count model

    USGS Publications Warehouse

    Thogmartin, W.E.; Knutson, M.G.; Sauer, J.R.

    2006-01-01

    Grassland birds are among the most imperiled groups of birds in North America. Unfortunately, little is known about the location of regional concentrations of these birds, thus regional or statewide conservation efforts may be inappropriately applied, reducing their effectiveness. We identified environmental covariates associated with the abundance of five grassland birds in the upper midwestern United States (Bobolink [Dolichonyx oryzivorus], Grasshopper Sparrow [Ammodramus savannarum], Henslow's Sparrow [A. henslowii], Sedge Wren [Cistothorus platensis], and Upland Sandpiper [Bartramia longicauda]) with a hierarchical spatial count model fitted with Markov chain Monte Carlo methods. Markov chain Monte Carlo methods are well suited to this task because they are able to incorporate effects associated with autocorrelated counts and nuisance effects associated with years and observers, and the resulting models can be used to map predicted abundance at a landscape scale. Environmental covariates were derived from five suites of variables: landscape composition, landscape configuration, terrain heterogeneity and physiognomy, climate, and human influence. The final models largely conformed to our a priori expectations. Bobolinks and Henslow's Sparrows were strongly sensitive to grassland patch area. All of the species except Henslow's Sparrows exhibited substantial negative relations with forest composition, often at multiple spatial scales. Climate was found to be important for all species, and was the most important factor influencing abundance of Grasshopper Sparrows. After mapping predicted abundance, we found no obvious correspondence in the regional patterns of the five species. Thus, no clearly defined areas exist within the upper midwestern United States where management plans can be developed for a whole suite of grassland birds. Instead, a larger, region-wide initiative setting different goals for different species is recommended.

  6. Distribution and abundance of zooplankton populations in Crater Lake, Oregon

    USGS Publications Warehouse

    Larson, G.L.; McIntire, C.D.; Buktenica, M.W.; Girdner, S.F.; Truitt, R.E.

    2007-01-01

    The zooplankton assemblages in Crater Lake exhibited consistency in species richness and general taxonomic composition, but varied in density and biomass during the period between 1988 and 2000. Collectively, the assemblages included 2 cladoceran taxa and 10 rotifer taxa (excluding rare taxa). Vertical habitat partitioning of the water column to a depth of 200 m was observed for most species with similar food habits and/or feeding mechanisms. No congeneric replacement was observed. The dominant species in the assemblages were variable, switching primarily between periods of dominance of Polyarthra-Keratella cochlearis and Daphnia. The unexpected occurrence and dominance of Asplanchna in 1991 and 1992 resulted in a major change in this typical temporal shift between Polyarthra-K. cochlearis and Daphnia. Following a collapse of the zooplankton biomass in 1993 that was probably caused by predation from Asplanchna, Kellicottia dominated the zooplankton assemblage biomass between 1994 and 1997. The decline in biomass of Kellicottia by 1998 coincided with a dramatic increase in Daphnia biomass. When Daphnia biomass declined by 2000, Keratella biomass increased again. Thus, by 1998 the assemblage returned to the typical shift between Keratella-Polyarthra and Daphnia. Although these observations provided considerable insight about the interannual variability of the zooplankton assemblages in Crater Lake, little was discovered about mechanisms behind the variability. When abundant, kokanee salmon may have played an important role in the disappearance of Daphnia in 1990 and 2000 either through predation, inducing diapause, or both. ?? 2007 Springer Science+Business Media B.V.

  7. Evaluating single-pass catch as a tool for identifying spatial pattern in fish distribution

    USGS Publications Warehouse

    Bateman, D.S.; Gresswell, R.E.; Torgersen, C.E.

    2005-01-01

    We evaluate the efficacy of single-pass electrofishing without blocknets as a tool for collecting spatially continuous fish distribution data in headwater streams. We compare spatial patterns in abundance, sampling effort, and length-frequency distributions from single-pass sampling of coastal cutthroat trout (Oncorhynchus clarki clarki) to data obtained from a more precise multiple-pass removal electrofishing method in two mid-sized (500–1000 ha) forested watersheds in western Oregon. Abundance estimates from single- and multiple-pass removal electrofishing were positively correlated in both watersheds, r = 0.99 and 0.86. There were no significant trends in capture probabilities at the watershed scale (P > 0.05). Moreover, among-sample variation in fish abundance was higher than within-sample error in both streams indicating that increased precision of unit-scale abundance estimates would provide less information on patterns of abundance than increasing the fraction of habitat units sampled. In the two watersheds, respectively, single-pass electrofishing captured 78 and 74% of the estimated population of cutthroat trout with 7 and 10% of the effort. At the scale of intermediate-sized watersheds, single-pass electrofishing exhibited a sufficient level of precision to be effective in detecting spatial patterns of cutthroat trout abundance and may be a useful tool for providing the context for investigating fish-habitat relationships at multiple scales.

  8. Predicting spatial kelp abundance in shallow coastal waters using the acoustic ground discrimination system RoxAnn

    NASA Astrophysics Data System (ADS)

    Mielck, F.; Bartsch, I.; Hass, H. C.; Wölfl, A.-C.; Bürk, D.; Betzler, C.

    2014-04-01

    Kelp forests represent a major habitat type in coastal waters worldwide and their structure and distribution is predicted to change due to global warming. Despite their ecological and economical importance, there is still a lack of reliable spatial information on their abundance and distribution. In recent years, various hydroacoustic mapping techniques for sublittoral environments evolved. However, in turbid coastal waters, such as off the island of Helgoland (Germany, North Sea), the kelp vegetation is present in shallow water depths normally excluded from hydroacoustic surveys. In this study, single beam survey data consisting of the two seafloor parameters roughness and hardness were obtained with RoxAnn from water depth between 2 and 18 m. Our primary aim was to reliably detect the kelp forest habitat with different densities and distinguish it from other vegetated zones. Five habitat classes were identified using underwater-video and were applied for classification of acoustic signatures. Subsequently, spatial prediction maps were produced via two classification approaches: Linear discriminant analysis (LDA) and manual classification routine (MC). LDA was able to distinguish dense kelp forest from other habitats (i.e. mixed seaweed vegetation, sand, and barren bedrock), but no variances in kelp density. In contrast, MC also provided information on medium dense kelp distribution which is characterized by intermediate roughness and hardness values evoked by reduced kelp abundances. The prediction maps reach accordance levels of 62% (LDA) and 68% (MC). The presence of vegetation (kelp and mixed seaweed vegetation) was determined with higher prediction abilities of 75% (LDA) and 76% (MC). Since the different habitat classes reveal acoustic signatures that strongly overlap, the manual classification method was more appropriate for separating different kelp forest densities and low-lying vegetation. It became evident that the occurrence of kelp in this area is not

  9. Marine Mammal Habitat in Ecuador: Seasonal Abundance and Environmental Distribution

    DTIC Science & Technology

    2010-06-01

    surveys will investigate the distribution of marine mammals inhabiting the oceanic areas between the Ecuadorian mainland and around the Galápagos Islands ...concentrations of chlorophyll off the West coast of the Galápagos Islands . Here, upwelling driven productivity (which is initiated by the subsurface...derived macronutrients) is enhanced by iron inputs derived from the island platform. The confluence of the Equatorial Undercurrent and Peru Current

  10. Land use determinants of small mammal abundance and distribution in a plague endemic area of Lushoto District, Tanzania.

    PubMed

    Hieronimo, Proches; Kimaro, Didas N; Kihupi, Nganga I; Gulinck, Hubert; Mulungu, Loth S; Msanya, Balthazar M; Leirs, Herwig; Deckers, Jozef A

    2014-07-01

    Small mammals are considered to be involved in the transmission cycle of bubonic plague, still occurring in different parts of the world, including the Lushoto District in Tanzania. The objective of this study was to determine the relationship between land use types and practices and small mammal abundance and distribution. A field survey was used to collect data in three landscapes differing in plague incidences. Data collection was done both in the wet season (April-June 2012) and dry season (August-October 2012). Analysis of variance and Boosted Regression Trees (BRT) modelling technique were used to establish the relationship between land use and small mammal abundance and distribution. Significant variations (p ≤ 0.05) of small mammal abundance among land use types were identified. Plantation forest with farming, natural forest and fallow had higher populations of small mammals than the other aggregated land use types. The influence of individual land use types on small mammal abundance level showed that, in both dry and wet seasons, miraba and fallow tended to favour small mammals' habitation whereas land tillage practices had the opposite effect. In addition, during the wet season crop types such as potato and maize appeared to positively influence the distribution and abundance of small mammals which was attributed to both shelter and food availability. Based on the findings from this study it is recommended that future efforts to predict and map spatial and temporal human plague infection risk at fine scale should consider the role played by land use and associated human activities on small mammal abundance and distribution.

  11. Host trait combinations drive abundance and canopy distribution of atmospheric bromeliad assemblages

    PubMed Central

    Chaves, Cleber Juliano Neves; Dyonisio, Júlio César; Rossatto, Davi Rodrigo

    2016-01-01

    Epiphytes are strongly dependent on the conditions created by their host's traits and a certain degree of specificity is expected between them, even if these species are largely abundant in a series of tree hosts of a given environment, as in the case of atmospheric bromeliads. Despite their considerable abundance in these environments, we hypothesize that stochasticity alone cannot explain the presence and abundance of atmospheric bromeliads on host trees, since host traits could have a greater influence on the establishment of these bromeliads. We used secondary and reforested seasonal forests and three distinct silvicultures to test whether species richness, phylogenetic diversity and functional diversity of trees can predict the differential presence, abundance and distribution of atmospheric bromeliads on hosts. We compared the observed parameters of their assemblage with null models and performed successive variance hierarchic partitions of abundance and distribution of the assemblage to detect the influence of multiple traits of the tree hosts. Our results do not indicate direct relationships between the abundance of atmospheric bromeliads and phylogenetic or functional diversity of trees, but instead indicate that bromeliads occurred on fewer tree species than expected by chance. We distinguished functional tree patterns that can improve or reduce the abundance of atmospheric bromeliads, and change their distribution on branches and trunk. While individual tree traits are related to increased abundance, species traits are related to the canopy distribution of atmospheric bromeliad assemblages. A balance among these tree functional patterns drives the atmospheric bromeliad assemblage of the forest patches. PMID:26888951

  12. Abundance and Distribution Patterns of Thunnus albacares in Isla del Coco National Park through Predictive Habitat Suitability Models.

    PubMed

    Gonzáles-Andrés, Cristina; F M Lopes, Priscila; Cortés, Jorge; Sánchez-Lizaso, José Luis; Pennino, Maria Grazia

    2016-01-01

    Information on the distribution and habitat preferences of ecologically and commercially important species is essential for their management and protection. This is especially important as climate change, pollution, and overfishing change the structure and functioning of pelagic ecosystems. In this study, we used Bayesian hierarchical spatial-temporal models to map the Essential Fish Habitats of the Yellowfin tuna (Thunnus albacares) in the waters around Isla del Coco National Park, Pacific Costa Rica, based on independent underwater observations from 1993 to 2013. We assessed if observed changes in the distribution and abundance of this species are related with habitat characteristics, fishing intensity or more extreme climatic events, including the El Niño Southern Oscillation, and changes on the average sea surface temperature. Yellowfin tuna showed a decreasing abundance trend in the sampled period, whereas higher abundances were found in shallow and warmer waters, with high concentration of chlorophyll-a, and in surrounding seamounts. In addition, El Niño Southern Oscillation events did not seem to affect Yellowfin tuna distribution and abundance. Understanding the habitat preferences of this species, using approaches as the one developed here, may help design integrated programs for more efficient management of vulnerable species.

  13. Abundance and Distribution Patterns of Thunnus albacares in Isla del Coco National Park through Predictive Habitat Suitability Models

    PubMed Central

    Gonzáles-Andrés, Cristina; F. M. Lopes, Priscila; Cortés, Jorge; Sánchez-Lizaso, José Luis; Pennino, Maria Grazia

    2016-01-01

    Information on the distribution and habitat preferences of ecologically and commercially important species is essential for their management and protection. This is especially important as climate change, pollution, and overfishing change the structure and functioning of pelagic ecosystems. In this study, we used Bayesian hierarchical spatial-temporal models to map the Essential Fish Habitats of the Yellowfin tuna (Thunnus albacares) in the waters around Isla del Coco National Park, Pacific Costa Rica, based on independent underwater observations from 1993 to 2013. We assessed if observed changes in the distribution and abundance of this species are related with habitat characteristics, fishing intensity or more extreme climatic events, including the El Niño Southern Oscillation, and changes on the average sea surface temperature. Yellowfin tuna showed a decreasing abundance trend in the sampled period, whereas higher abundances were found in shallow and warmer waters, with high concentration of chlorophyll-a, and in surrounding seamounts. In addition, El Niño Southern Oscillation events did not seem to affect Yellowfin tuna distribution and abundance. Understanding the habitat preferences of this species, using approaches as the one developed here, may help design integrated programs for more efficient management of vulnerable species. PMID:27973538

  14. The global abundance and size distribution of lakes, ponds, and impoundments

    USGS Publications Warehouse

    Downing, J.A.; Prairie, Y.T.; Cole, J.J.; Duarte, C.M.; Tranvik, L.J.; Striegl, R.G.; McDowell, W.H.; Kortelainen, Pirkko; Caraco, N.F.; Melack, J.M.; Middelburg, J.J.

    2006-01-01

    One of the major impediments to the integration of lentic ecosystems into global environmental analyses has been fragmentary data on the extent and size distribution of lakes, ponds, and impoundments. We use new data sources, enhanced spatial resolution, and new analytical approaches to provide new estimates of the global abundance of surface-water bodies. A global model based on the Pareto distribution shows that the global extent of natural lakes is twice as large as previously known (304 million lakes; 4.2 million km 2 in area) and is dominated in area by millions of water bodies smaller than 1 km2. Similar analyses of impoundments based on inventories of large, engineered dams show that impounded waters cover approximately 0.26 million km2. However, construction of low-tech farm impoundments is estimated to be between 0.1 % and 6% of farm area worldwide, dependent upon precipitation, and represents >77,000 km 2 globally, at present. Overall, about 4.6 million km2 of the earth's continental "land" surface (>3%) is covered by water. These analyses underscore the importance of explicitly considering lakes, ponds, and impoundments, especially small ones, in global analyses of rates and processes. ?? 2006, by the American Society of Limnology and Oceanography, Inc.

  15. Spatial distribution of pingos in Northern Asia

    USGS Publications Warehouse

    Grosse, G.; Jones, Benjamin M.

    2010-01-01

    Pingos are prominent periglacial landforms in vast regions of the Arctic and Subarctic. They are indicators of modern and past conditions of permafrost, surface geology, hydrology and climate. A first version of a detailed spatial geodatabase of more than 6000 pingo locations in a 3.5 ?? 106 km2 region of Northern Asia was assembled from topographic maps. A first order analysis was carried out with respect to permafrost, landscape characteristics, surface geology, hydrology, climate, and elevation datasets using a Geographic Information System (GIS). Pingo heights in the dataset vary between 2 and 37 m, with a mean height of 4.8 m. About 64% of the pingos occur in continuous permafrost with high ice content and thick sediments; another 19% in continuous permafrost with moderate ice content and thick sediments. The majority of these pingos likely formed through closed system freezing, typical of those located in drained thermokarst lake basins of northern lowlands with continuous permafrost. About 82% of the pingos are located in the tundra bioclimatic zone. Most pingos in the dataset are located in regions with mean annual ground temperatures between -3 and -11 ??C and mean annual air temperatures between -7 and -18 ??C. The dataset confirms that surface geology and hydrology are key factors for pingo formation and occurrence. Based on model predictions for near-future permafrost distribution, hundreds of pingos along the southern margins of permafrost will be located in regions with thawing permafrost by 2100, which ultimately may lead to increased occurrence of pingo collapse. Based on our dataset and previously published estimates of pingo numbers from other regions, we conclude that there are more than 11 000 pingos on Earth. ?? 2010 Author(s).

  16. Spatial distribution of pingos in Northern Asia

    NASA Astrophysics Data System (ADS)

    Grosse, G.; Jones, B. M.

    2010-09-01

    Pingos are prominent periglacial landforms in vast regions of the Arctic and Subarctic. They are indicators of modern and past conditions of permafrost, surface geology, hydrology and climate. A first version of a detailed spatial geodatabase of more than 6000 pingo locations in a 3.5 × 106 km2 region of Northern Asia was assembled from topographic maps. A first order analysis was carried out with respect to permafrost, landscape characteristics, surface geology, hydrology, climate, and elevation datasets using a Geographic Information System (GIS). Pingo heights in the dataset vary between 2 and 37 m, with a mean height of 4.8 m. About 64% of the pingos occur in continuous permafrost with high ice content and thick sediments; another 19% in continuous permafrost with moderate ice content and thick sediments. The majority of these pingos likely formed through closed system freezing, typical of those located in drained thermokarst lake basins of northern lowlands with continuous permafrost. About 82% of the pingos are located in the tundra bioclimatic zone. Most pingos in the dataset are located in regions with mean annual ground temperatures between -3 and -11 °C and mean annual air temperatures between -7 and -18 °C. The dataset confirms that surface geology and hydrology are key factors for pingo formation and occurrence. Based on model predictions for near-future permafrost distribution, hundreds of pingos along the southern margins of permafrost will be located in regions with thawing permafrost by 2100, which ultimately may lead to increased occurrence of pingo collapse. Based on our dataset and previously published estimates of pingo numbers from other regions, we conclude that there are more than 11 000 pingos on Earth.

  17. Spatial distribution of pingos in northern Asia

    NASA Astrophysics Data System (ADS)

    Grosse, G.; Jones, B. M.

    2011-01-01

    Pingos are prominent periglacial landforms in vast regions of the Arctic and Subarctic. They are indicators of modern and past conditions of permafrost, surface geology, hydrology and climate. A first version of a detailed spatial geodatabase of 6059 pingo locations in a 3.5×106 km2 region of northern Asia was assembled from topographic maps. A first order analysis was carried out with respect to permafrost, landscape characteristics, surface geology, hydrology, climate, and elevation datasets using a Geographic Information System (GIS). Pingo heights in the dataset vary between 2 and 37 m, with a mean height of 4.8 m. About 64% of the pingos occur in continuous permafrost with high ice content and thick sediments; another 19% in continuous permafrost with moderate ice content and thick sediments. The majority of these pingos are likely hydrostatic pingos, which are typical of those located in drained thermokarst lake basins of northern lowlands with continuous permafrost. About 82% of the pingos are located in the tundra bioclimatic zone. Most pingos in the dataset are located in regions with mean annual ground temperatures between -3 and -11 °C and mean annual air temperatures between -7 and -18 °C. The dataset confirms that surface geology and hydrology are key factors for pingo formation and occurrence. Based on model predictions for near-future permafrost distribution, about 2073 pingos (34%) along the southern margins of permafrost will be located in regions with thawing permafrost by 2100, which ultimately may lead to increased occurrence of pingo collapse. Based on our dataset and previously published estimates of pingo numbers from other regions, we conclude that there are more than 11 000 pingos on Earth.

  18. Microbial Abundances in Salt Marsh Soils: A Molecular Approach for Small Spatial Scales

    NASA Astrophysics Data System (ADS)

    Granse, Dirk; Mueller, Peter; Weingartner, Magdalena; Hoth, Stefan; Jensen, Kai

    2016-04-01

    The rate of biological decomposition greatly determines the carbon sequestration capacity of salt marshes. Microorganisms are involved in the decomposition of biomass and the rate of decomposition is supposed to be related to microbial abundance. Recent studies quantified microbial abundance by means of quantitative polymerase chain reaction (QPCR), a method that also allows determining the microbial community structure by applying specific primers. The main microbial community structure can be determined by using primers specific for 16S rRNA (Bacteria) and 18S rRNA (Fungi) of the microbial DNA. However, the investigation of microbial abundance pattern at small spatial scales, such as locally varying abiotic conditions within a salt-marsh system, requires high accuracy in DNA extraction and QPCR methods. Furthermore, there is evidence that a single extraction may not be sufficient to reliably quantify rRNA gene copies. The aim of this study was to establish a suitable DNA extraction method and stable QPCR conditions for the measurement of microbial abundances in semi-terrestrial environments. DNA was extracted from two soil samples (top WE{5}{cm}) by using the PowerSoil DNA Extraction Kit (Mo Bio Laboratories, Inc., Carlsbad, CA) and applying a modified extraction protocol. The DNA extraction was conducted in four consecutive DNA extraction loops from three biological replicates per soil sample by reusing the PowerSoil bead tube. The number of Fungi and Bacteria rRNA gene copies of each DNA extraction loop and a pooled DNA solution (extraction loop 1 - 4) was measured by using the QPCR method with taxa specific primer pairs (Bacteria: B341F, B805R; Fungi: FR1, FF390). The DNA yield of the replicates varied at DNA extraction loop 1 between WE{25 and 85}{ng

  19. [The distribution of the macrobenthos of the White Sea littoral in different spatial scales].

    PubMed

    Chertoprud, M V; Azovskiĭ, A I

    2000-01-01

    Spatial distribution of macrobenthos of middle intertidal zone was studied in scale from centimetres to 30 kilometres along the coastline. The community structure and distribution of the 5 most abundant species (Hydrobia ulvae, Mya arenaria, Macoma baltica. Peloscolex benedeni, Arenicola marina) were considered. Spatial heterogeneity of macrobenthos, estimated as mean dissimilarity between samples, kept constant in scale of centimetres--meters, but increased significantly when enlarged area is considered. Patterns of many species changed with scale from random mosaic to more or less pronounced patchiness, whereas the density of H. ulvae and the structure of the whole community demonstrated fractal (self-similar) patch pattern in wide range of scale from dozens of meters to several kilometres. Spatial correlations between species (the composition of assemblages) and between species and environmental factors were also scale dependent. Some possible effects of scale on the observed spatial distribution of benthos are discussed, and multiscaled analysis of biotic heterogeneity is concluded to be very fruitful.

  20. Spatial Distribution of Black Bear Incident Reports in Michigan.

    PubMed

    McFadden-Hiller, Jamie E; Beyer, Dean E; Belant, Jerrold L

    2016-01-01

    Interactions between humans and carnivores have existed for centuries due to competition for food and space. American black bears are increasing in abundance and populations are expanding geographically in many portions of its range, including areas that are also increasing in human density, often resulting in associated increases in human-bear conflict (hereafter, bear incidents). We used public reports of bear incidents in Michigan, USA, from 2003-2011 to assess the relative contributions of ecological and anthropogenic variables in explaining the spatial distribution of bear incidents and estimated the potential risk of bear incidents. We used weighted Normalized Difference Vegetation Index mean as an index of primary productivity, region (i.e., Upper Peninsula or Lower Peninsula), primary and secondary road densities, and percentage land cover type within 6.5-km2 circular buffers around bear incidents and random points. We developed 22 a priori models and used generalized linear models and Akaike's Information Criterion (AIC) to rank models. The global model was the best compromise between model complexity and model fit (w = 0.99), with a ΔAIC 8.99 units from the second best performing model. We found that as deciduous forest cover increased, the probability of bear incident occurrence increased. Among the measured anthropogenic variables, cultivated crops and primary roads were the most important in our AIC-best model and were both positively related to the probability of bear incident occurrence. The spatial distribution of relative bear incident risk varied markedly throughout Michigan. Forest cover fragmented with agriculture and other anthropogenic activities presents an environment that likely facilitates bear incidents. Our map can help wildlife managers identify areas of bear incident occurrence, which in turn can be used to help develop strategies aimed at reducing incidents. Researchers and wildlife managers can use similar mapping techniques to

  1. Spatial Distribution of Black Bear Incident Reports in Michigan

    PubMed Central

    McFadden-Hiller, Jamie E.; Beyer, Dean E.; Belant, Jerrold L.

    2016-01-01

    Interactions between humans and carnivores have existed for centuries due to competition for food and space. American black bears are increasing in abundance and populations are expanding geographically in many portions of its range, including areas that are also increasing in human density, often resulting in associated increases in human-bear conflict (hereafter, bear incidents). We used public reports of bear incidents in Michigan, USA, from 2003–2011 to assess the relative contributions of ecological and anthropogenic variables in explaining the spatial distribution of bear incidents and estimated the potential risk of bear incidents. We used weighted Normalized Difference Vegetation Index mean as an index of primary productivity, region (i.e., Upper Peninsula or Lower Peninsula), primary and secondary road densities, and percentage land cover type within 6.5-km2 circular buffers around bear incidents and random points. We developed 22 a priori models and used generalized linear models and Akaike’s Information Criterion (AIC) to rank models. The global model was the best compromise between model complexity and model fit (w = 0.99), with a ΔAIC 8.99 units from the second best performing model. We found that as deciduous forest cover increased, the probability of bear incident occurrence increased. Among the measured anthropogenic variables, cultivated crops and primary roads were the most important in our AIC-best model and were both positively related to the probability of bear incident occurrence. The spatial distribution of relative bear incident risk varied markedly throughout Michigan. Forest cover fragmented with agriculture and other anthropogenic activities presents an environment that likely facilitates bear incidents. Our map can help wildlife managers identify areas of bear incident occurrence, which in turn can be used to help develop strategies aimed at reducing incidents. Researchers and wildlife managers can use similar mapping techniques to

  2. Spatial patterns in the distribution of damselfishes on a fringing coral reef

    NASA Astrophysics Data System (ADS)

    Meekan, M. G.; Steven, A. D. L.; Fortin, M. J.

    1995-09-01

    Damselfishes are an important element of the fauna of coral reefs. This study describes spatial patterns in the distribution of 15 species of damselfishes at Lizard Island, northern Great Barrier Reef (GBR). The aim of the work was to identify the spatial scales at which major changes in the composition and abundance of the fauna occurred. These patterns were then compared with previous studies in an attempt to determine if distributions followed general patterns at a range of localities. The assemblage found at Lizard Island was similar to that of reefs in the central GBR. The most important changes in the composition of the fauna occurred among reef zones. Shallow zones (the reef flat and crest) were dominated by herbivorous species while planktivorous and omnivorous species were most abundant in deeper zones (the reef slope). Densities of herbivorous damselfishes in shallow reef zones at Lizard Island averaged 45.5 individuals per 80 m2, a value comparable to densities found in similar zones on reefs in the central and southern GBR and at one locality in the Caribbean. Comparisons of relative distributions suggested that abundant species tend to be widely distributed among zones and habitats, while rare species have restricted distributions at Lizard Island. However, computer simulation of the sampling program suggested that the ability of our study to describe the distribution patterns of rare species was limited, despite intensive sampling. Correlations between breadth of distribution and abundance may have occurred simply because rare species were less likely to be recorded within a transect. Our results suggest that it will be difficult to compare the distribution patterns of species among studies. Furthermore, the interpretation of relative patterns of distribution at a single locality in terms of ecological specialization or partitioning may first require an assessment of the ability of the sampling program to accurately record spatial patterns.

  3. [Thoughts on the spatial distribution of population].

    PubMed

    Borisovna, L; Velez, F

    1991-12-01

    city in all age groups, especially in the 15-19 cohort. A large proportion of the migrants were more highly educated than the average city dweller. The average rate of growth of the working age population in the city was 6% from 1970-80, implying a need for 35,000 new jobs annually. But in 1980-90, only 10,000 new jobs were added each year. The relative importance of tertiary sector employment has increased significantly. A review of the population characteristics and spatial distribution of the city and state of Puebla strongly suggests that decentralization should be vigorously pursued as a means of improving the wellbeing of the population.

  4. Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats.

    PubMed

    Carreira, Cátia; Piel, Tim; Staal, Marc; Stuut, Jan-Berend W; Middelboe, Mathias; Brussaard, Corina P D

    2015-01-01

    Intertidal photosynthetic microbial mats from the Wadden Sea island Schiermonnikoog were examined for microscale (millimetre) spatial distributions of viruses, prokaryotes and oxygenic photoautotrophs (filamentous cyanobacteria and benthic diatoms) at different times of the year. Abundances of viruses and prokaryotes were among the highest found in benthic systems (0.05-5.43 × 10(10) viruses g(-1) and 0.05-2.14 × 10(10) prokaryotes g(-1)). The spatial distribution of viruses, prokaryotes and oxygenic photoautotrophs were highly heterogeneous at mm scales. The vertical distributions of both prokaryotic and viral abundances were related to the depth of the oxygenic photoautotrophic layer, implying that the photosynthetic mat fuelled the microbial processes in the underlying layer. Our data suggest that viruses could make an important component in these productive environments potentially affecting the biodiversity and nutrient cycling within the mat.

  5. Abundance and Spatial Dispersion of Rice Stem Borer Species in Kahama, Tanzania.

    PubMed

    Leonard, Alfonce; Rwegasira, Gration M

    2015-01-01

    Species diversity, abundance, and dispersion of rice stem borers in framer's fields were studied in four major rice growing areas of Kahama District. Stem borer larvae were extracted from the damaged tillers in 16 quadrants established in each field. Adult Moths were trapped by light traps and collected in vials for identification. Results indicated the presence of Chilo partellus, Maliarpha separatella, and Sesamia calamistis in all study areas. The most abundant species was C. partellus (48.6%) followed by M. separatella (35.4%) and S. calamistis was least abundant (16.1%). Stem borers dispersion was aggregated along the edges of rice fields in three locations (wards) namely: Bulige, Chela, and Ngaya. The dispersion in the fourth ward, Kashishi was uniform as established from two of the three dispersion indices tested. Further studies would be required to establish the available alternative hosts, the extent of economic losses and the distribution of rice stem borers in the rest of the Lake zone of Tanzania.

  6. Abundance and Spatial Dispersion of Rice Stem Borer Species in Kahama, Tanzania

    PubMed Central

    Leonard, Alfonce; Rwegasira, Gration M.

    2015-01-01

    Species diversity, abundance, and dispersion of rice stem borers in framer’s fields were studied in four major rice growing areas of Kahama District. Stem borer larvae were extracted from the damaged tillers in 16 quadrants established in each field. Adult Moths were trapped by light traps and collected in vials for identification. Results indicated the presence of Chilo partellus, Maliarpha separatella, and Sesamia calamistis in all study areas. The most abundant species was C. partellus (48.6%) followed by M. separatella (35.4%) and S. calamistis was least abundant (16.1%). Stem borers dispersion was aggregated along the edges of rice fields in three locations (wards) namely: Bulige, Chela, and Ngaya. The dispersion in the fourth ward, Kashishi was uniform as established from two of the three dispersion indices tested. Further studies would be required to establish the available alternative hosts, the extent of economic losses and the distribution of rice stem borers in the rest of the Lake zone of Tanzania. PMID:26411785

  7. Geo-Referenced, Abundance Calibrated Ocean Distribution of Chinook Salmon (Oncorhynchus tshawytscha) Stocks across the West Coast of North America

    PubMed Central

    Bellinger, M. Renee; Banks, Michael A.; Bates, Sarah J.; Crandall, Eric D.; Garza, John Carlos; Sylvia, Gil; Lawson, Peter W.

    2015-01-01

    Understanding seasonal migration and localized persistence of populations is critical for effective species harvest and conservation management. Pacific salmon (genus Oncorhynchus) forecasting models predict stock composition, abundance, and distribution during annual assessments of proposed fisheries impacts. Most models, however, fail to account for the influence of biophysical factors on year-to-year fluctuations in migratory distributions and stock-specific survival. In this study, the ocean distribution and relative abundance of Chinook salmon (O. tshawytscha) stocks encountered in the California Current large marine ecosystem, U.S.A were inferred using catch-per-unit effort (CPUE) fisheries and genetic stock identification data. In contrast to stock distributions estimated through coded-wire-tag recoveries (typically limited to hatchery salmon), stock-specific CPUE provides information for both wild and hatchery fish. Furthermore, in contrast to stock composition results, the stock-specific CPUE metric is independent of other stocks and is easily interpreted over multiple temporal or spatial scales. Tests for correlations between stock-specific CPUE and stock composition estimates revealed these measures diverged once proportional contributions of locally rare stocks were excluded from data sets. A novel aspect of this study was collection of data both in areas closed to commercial fisheries and during normal, open commercial fisheries. Because fishing fleet efficiency influences catch rates, we tested whether CPUE differed between closed area (non-retention) and open area (retention) data sets. A weak effect was indicated for some, but not all, analyzed cases. Novel visualizations produced from stock-specific CPUE-based ocean abundance facilitates consideration of how highly refined, spatial and genetic information could be incorporated in ocean fisheries management systems and for investigations of biogeographic factors that influence migratory

  8. Geo-Referenced, Abundance Calibrated Ocean Distribution of Chinook Salmon (Oncorhynchus tshawytscha) Stocks across the West Coast of North America.

    PubMed

    Bellinger, M Renee; Banks, Michael A; Bates, Sarah J; Crandall, Eric D; Garza, John Carlos; Sylvia, Gil; Lawson, Peter W

    2015-01-01

    Understanding seasonal migration and localized persistence of populations is critical for effective species harvest and conservation management. Pacific salmon (genus Oncorhynchus) forecasting models predict stock composition, abundance, and distribution during annual assessments of proposed fisheries impacts. Most models, however, fail to account for the influence of biophysical factors on year-to-year fluctuations in migratory distributions and stock-specific survival. In this study, the ocean distribution and relative abundance of Chinook salmon (O. tshawytscha) stocks encountered in the California Current large marine ecosystem, U.S.A were inferred using catch-per-unit effort (CPUE) fisheries and genetic stock identification data. In contrast to stock distributions estimated through coded-wire-tag recoveries (typically limited to hatchery salmon), stock-specific CPUE provides information for both wild and hatchery fish. Furthermore, in contrast to stock composition results, the stock-specific CPUE metric is independent of other stocks and is easily interpreted over multiple temporal or spatial scales. Tests for correlations between stock-specific CPUE and stock composition estimates revealed these measures diverged once proportional contributions of locally rare stocks were excluded from data sets. A novel aspect of this study was collection of data both in areas closed to commercial fisheries and during normal, open commercial fisheries. Because fishing fleet efficiency influences catch rates, we tested whether CPUE differed between closed area (non-retention) and open area (retention) data sets. A weak effect was indicated for some, but not all, analyzed cases. Novel visualizations produced from stock-specific CPUE-based ocean abundance facilitates consideration of how highly refined, spatial and genetic information could be incorporated in ocean fisheries management systems and for investigations of biogeographic factors that influence migratory

  9. Species abundance in a forest community in South China: A case of poisson lognormal distribution

    USGS Publications Warehouse

    Yin, Z.-Y.; Ren, H.; Zhang, Q.-M.; Peng, S.-L.; Guo, Q.-F.; Zhou, G.-Y.

    2005-01-01

    Case studies on Poisson lognormal distribution of species abundance have been rare, especially in forest communities. We propose a numerical method to fit the Poisson lognormal to the species abundance data at an evergreen mixed forest in the Dinghushan Biosphere Reserve, South China. Plants in the tree, shrub and herb layers in 25 quadrats of 20 m??20 m, 5 m??5 m, and 1 m??1 m were surveyed. Results indicated that: (i) for each layer, the observed species abundance with a similarly small median, mode, and a variance larger than the mean was reverse J-shaped and followed well the zero-truncated Poisson lognormal; (ii) the coefficient of variation, skewness and kurtosis of abundance, and two Poisson lognormal parameters (?? and ??) for shrub layer were closer to those for the herb layer than those for the tree layer; and (iii) from the tree to the shrub to the herb layer, the ?? and the coefficient of variation decreased, whereas diversity increased. We suggest that: (i) the species abundance distributions in the three layers reflects the overall community characteristics; (ii) the Poisson lognormal can describe the species abundance distribution in diverse communities with a few abundant species but many rare species; and (iii) 1/?? should be an alternative measure of diversity.

  10. Spatial variability in zooplankton abundance near feeding right whales in the Great South Channel

    NASA Astrophysics Data System (ADS)

    Beardsley, Robert C.; Epstein, Ari W.; Chen, Changsheng; Wishner, Karen F.; Macaulay, Michael C.; Kenney, Robert D.

    On 3 June 1989, during SCOPEX'89, two right whales were observed to be feeding close to the surface at separate sites in the Great South Channel of the Gulf of Maine. The R.V. Marlin deployed and monitored a radio tag on one whale, and underway measurements were made near each whale from the R.V. Endeavor to investigate the small-scale spatial structure of water properties and zooplankton abundance in the upper water column near the whales. These measurements included two CTD tow-yos, zooplankton sampling with a MOCNESS, continuous vertical profiling of currents with a 150-kHz ADCP, and continuous vertical profiling of zooplankton concentration with a towed acoustic profiler operating at 120 and 200 kHz. The whales were feeding on a relatively homogeneous mixture of primarily two stages (copepodite IV and V) of a single copepod species ( Calanus finmarchicus), which was most abundant in the upper 10-20 m of the water column above the seasonal pycnocline. Descriptions of the spatial structure of copepod abundance in patches traversed by the whales were developed based on MOCNESS samples, acoustic backscatter, and light transmission. In particular, a high correlation was found between MOCNESS biomass measurements and certain 200-kHz acoustic biomass estimates, which enabled the acoustic data to be interpreted solely in terms of copepod abundance. Acoustic measurements made in a copepod patch while closely following one whale indicated mean and peak copepod biomasses of 6.0 and 28.4 g m -3 (corresponding to mean and peak concentrations of 8.7 × 10 3 and 4.1 × 10 4) copepods m -3 in the 4-10 m depth band, where the whale was probably feeding. With a mean energy content of 10 -3 kcal copepod -1, that whale's mean energy intake rate was 3.8 × 10 4 kcal h -1. The whale was observed to reverse course and turn back into the patch when it swam into a region of lower copepod abundance, with biomass less than roughly 1-3 g m -3 or 1.5-4.5 × 10 3 copepods m -3. This

  11. Abundance estimation from multiple photo surveys: confidence distributions and reduced likelihoods for bowhead whales off Alaska.

    PubMed

    Schweder, Tore

    2003-12-01

    Maximum likelihood estimates of abundance are obtained from repeated photographic surveys of a closed stratified population with naturally marked and unmarked individuals. Capture intensities are assumed log-linear in stratum, year, and season. In the chosen model, an approximate confidence distribution for total abundance of bowhead whales, with an accompanying likelihood reduced of nuisance parameters, is found from a parametric bootstrap experiment. The confidence distribution depends on the assumed study protocol. A confidence distribution that is exact (except for the effect of discreteness) is found by conditioning in the unstratified case without unmarked individuals.

  12. Acoustic estimates of abundance and distribution of spawning lake trout on Sheboygan Reef in Lake Michigan

    USGS Publications Warehouse

    Warner, D.M.; Claramunt, R.M.; Janssen, J.; Jude, D.J.; Wattrus, N.

    2009-01-01

    Efforts to restore self-sustaining lake trout (Salvelinus namaycush) populations in the Laurentian Great Lakes have had widespread success in Lake Superior; but in other Great Lakes, populations of lake trout are maintained by stocking. Recruitment bottlenecks may be present at a number of stages of the reproduction process. To study eggs and fry, it is necessary to identify spawning locations, which is difficult in deep water. Acoustic sampling can be used to rapidly locate aggregations of fish (like spawning lake trout), describe their distribution, and estimate their abundance. To assess these capabilities for application to lake trout, we conducted an acoustic survey covering 22 km2 at Sheboygan Reef, a deep reef (<40 m summit) in southern Lake Michigan during fall 2005. Data collected with remotely operated vehicles (ROV) confirmed that fish were large lake trout, that lake trout were 1–2 m above bottom, and that spawning took place over specific habitat. Lake trout density exhibited a high degree of spatial structure (autocorrelation) up to a range of ~190 m, and highest lake trout and egg densities occurred over rough substrates (rubble and cobble) at the shallowest depths sampled (36–42 m). Mean lake trout density in the area surveyed (~2190 ha) was 5.8 fish/ha and the area surveyed contained an estimated 9500–16,000 large lake trout. Spatial aggregation in lake trout densities, similarity of depths and substrates at which high lake trout and egg densities occurred, and relatively low uncertainty in the lake trout density estimate indicate that acoustic sampling can be a useful complement to other sampling tools used in lake trout restoration research.

  13. Effects of harvesting flowers from shrubs on the persistence and abundance of wild shrub populations at multiple spatial extents.

    PubMed

    Cabral, Juliano Sarmento; Bond, William J; Midgley, Guy F; Rebelo, Anthony G; Thuiller, Wilfried; Schurr, Frank M

    2011-02-01

    Wildflower harvesting is an economically important activity of which the ecological effects are poorly understood. We assessed how harvesting of flowers affects shrub persistence and abundance at multiple spatial extents. To this end, we built a process-based model to examine the mean persistence and abundance of wild shrubs whose flowers are subject to harvest (serotinous Proteaceae in the South African Cape Floristic Region). First, we conducted a general sensitivity analysis of how harvesting affects persistence and abundance at nested spatial extents. For most spatial extents and combinations of demographic parameters, persistence and abundance of flowering shrubs decreased abruptly once harvesting rate exceeded a certain threshold. At larger extents, metapopulations supported higher harvesting rates before their persistence and abundance decreased, but persistence and abundance also decreased more abruptly due to harvesting than at smaller extents. This threshold rate of harvest varied with species' dispersal ability, maximum reproductive rate, adult mortality, probability of extirpation or local extinction, strength of Allee effects, and carrying capacity. Moreover, spatial extent interacted with Allee effects and probability of extirpation because both these demographic properties affected the response of local populations to harvesting more strongly than they affected the response of metapopulations. Subsequently, we simulated the effects of harvesting on three Cape Floristic Region Proteaceae species and found that these species reacted differently to harvesting, but their persistence and abundance decreased at low rates of harvest. Our estimates of harvesting rates at maximum sustainable yield differed from those of previous investigations, perhaps because researchers used different estimates of demographic parameters, models of population dynamics, and spatial extent than we did. Good demographic knowledge and careful identification of the spatial extent

  14. Distribution, abundance and diversity of crustose coralline algae on the Great Barrier Reef

    NASA Astrophysics Data System (ADS)

    Dean, Angela J.; Steneck, Robert S.; Tager, Danika; Pandolfi, John M.

    2015-06-01

    The Great Barrier Reef (GBR) is the world's largest coral reef ecosystem. Crustose coralline algae (CCA) are important contributors to reef calcium carbonate and can facilitate coral recruitment. Despite the importance of CCA, little is known about species-level distribution, abundance, and diversity, and how these vary across the continental shelf and key habitat zones within the GBR. We quantified CCA species distributions using line transects ( n = 127) at 17 sites in the northern and central regions of the GBR, distributed among inner-, mid-, and outer-shelf regions. At each site, we identified CCA along replicate transects in three habitat zones: reef flat, reef crest, and reef slope. Taxonomically, CCA species are challenging to identify (especially in the field), and there is considerable disagreement in approach. We used published, anatomically based taxonomic schemes for consistent identification. We identified 30 CCA species among 12 genera; the most abundant species were Porolithon onkodes, Paragoniolithon conicum (sensu Adey), Neogoniolithon fosliei, and Hydrolithon reinboldii. Significant cross-shelf differences were observed in CCA community structure and CCA abundance, with inner-shelf reefs exhibiting lower CCA abundance than outer-shelf reefs. Shelf position, habitat zone, latitude, depth, and the interaction of shelf position and habitat were all significantly associated with variation in composition of CCA communities. Collectively, shelf position, habitat, and their interaction contributed to 22.6 % of the variation in coralline communities. Compared to mid- and outer-shelf sites, inner-shelf sites exhibited lower relative abundances of N. fosliei and Lithophyllum species. Reef crest habitats exhibited greater abundance of N. fosliei than reef flat and reef slope habitats. Reef slope habitats exhibited lower abundance of P. onkodes, but greater abundance of Neogoniolithon clavycymosum than reef crest and reef slope habitats. These findings

  15. Distribution and abundance of decapod crustacean larvae in the southeastern Bering Sea with emphasis on commercial species. Final report

    SciTech Connect

    Armstrong, D.A.; Incze, L.S.; Wencker, D.L.; Armstrong, J.L.

    1981-01-01

    Contents include: Distribution and abundance of king crab larvae, Paralithodes camtschatica and P. platypus in the southeast Bering Sea; Distribution and abundance of the larvae of tanner crabs in the southeastern Bering Sea; Distribution and abundance of other brachyuran larvae in the southeastern Bering Sea with emphasis on Erimacrus isenbeckii; Distribution and abundance of shrimp larvae in the southeastern Bering Sea with emphasis on pandalid species; Distribution and abundance of hermit crabs (Paguridae) in the southeasternBering Sea; Possible oil impacts on decapod larbae in the southeastern Bering Sea with emphesis on the St. George Basin.

  16. Competition with stone crabs drives juvenile spiny lobster abundance and distribution.

    PubMed

    Behringer, Donald C; Hart, John E

    2017-02-28

    Interspecific competition is assumed to have a strong influence on the population dynamics of competing species, but is not easily demonstrated for mobile species in the wild. In the Florida Keys (USA), anecdotal observations have long pointed to an inverse relationship in abundance of two large decapod crustaceans found co-occurring in hard-bottom habitat, the stone crab Menippe mercenaria and the Caribbean spiny lobster Panulirus argus. We used them to explicitly test whether competition for a renewable resource (shelter) can drive the abundance and distribution of the inferior competitor. We first explored this relationship in shelter competition mesocosm experiments to determine the competitively dominant species. Results showed that stone crabs are clearly the dominant competitors regardless of the number of lobsters present, the presence of co-sheltering species such as the spider crab, Damithrax spinosissimus, or the order of introduction of competitors into the mesocosm. We also found that lobsters use chemical cues from stone crabs to detect and avoid them. We then tested the ramifications of this competitive dominance in the field by manipulating stone crab abundance and then tracking the abundance and distribution of spiny lobsters through time. Increased stone crab abundance immediately resulted in decreased lobster abundance and increased aggregation. The opposite occurred on sites where stone crabs were removed. When we stopped removing stone crabs from these sites, they soon returned and lobster abundance decreased. This study explicitly demonstrated that interspecific competition can drive population dynamics between these species, and ultimately, community composition in these shallow water habitats.

  17. The Giant Branch of omega Centauri. V. The Calcium Abundance Distribution

    NASA Astrophysics Data System (ADS)

    Norris, John E.; Freeman, K. C.; Mighell, K. J.

    1996-05-01

    We present an unbiased catalog of calcium abundances for 517 red giants brighter that MV ˜ -1 in the chemically inhomogeneous globular cluster ω Centauri. The basic features of the abundance distribution are as follows: (1) few, if any, stars exist on the giant branch of ω Cen with [Ca/H] less than ˜-1.6; (2) there is a well-defined peak in the distribution at [Ca/H] = -1.4, with a long tail stretching up to [Ca/H] ˜-0.3; and (3) the distribution is bimodal with a second smaller peak in the distribution at [Ca/H] = -0.9. The distribution may be well fitted by two components each having a simple closed box abundance distribution and for which the ratio of more metal rich to more metal poor is ˜0.2. We argue that the present data, taken together with the abundance patterns of the s-process elements in this cluster reported by in 1994 by Vanture, Wallerstein, & Brown and in 1995 by Norris & Da Costa, are most convincingly described in terms of the two components representing successive epochs of star formation in the cluster, rather than of their being two independent merging fragments. Examination of the radial distribution of [Ca/H] suggests that there is an abundance gradient in the cluster, consistent with its having been formed in a dissipative manner. The picture emerges of ω Cen having evolved within the Searle-Zinn paradigm of Galactic globular cluster formation, from a gaseous protocloud of mass perhaps as large as ˜108 Msun and initial abundance [Ca/H] ˜ -1.5 on a timescale 1 Gyr, well away from the central region of the forming Galaxy and later coming into dynamical equilibrium with it.

  18. The distribution and abundance of desert tortoises on the Nevada Test Site

    SciTech Connect

    Not Available

    1991-01-01

    This report presents the results of transect studies conducted from 1981--1986 to determine the distribution and abundance of desert tortoises (Gopherus agassizii) on the Nevada Test Site (NTS) and summarizes the current understanding of the distribution of this species on NTS. Seven hundred fifty-nine transect having a total length of 1,190.7 km were walked and 380 sign of tortoises were counted. The abundance of tortoises on NTS is low to very low relative to the other areas within this species' range. Tortoises appear to be more abundant on NTS on the bajadas and foothills of limestone and dolomite mountains than on mountains of volcanic origin. Sign of tortoises were found were 880 to 1600 m and sign was more abundant at higher elevations (>1200 m) than has been reported previously for Nevada. The scale of classification of vegetation associations available for NTS is too large to be useful for predicting tortoise abundance. Tortoises were found only in approximately the southern third of NTS. They probably do not occur in Yucca Flat or anywhere else north of the Control Point. A map of the northern boundary of the range of desert tortoises on NTS is presented and additional studies of the distribution and abundance of tortoises on NTS are recommended. 30 refs., 9 figs., 4 tabs.

  19. The Spatial Distribution of Sucrose Synthase Isozymes in Barley.

    PubMed Central

    Guerin, J.; Carbonero, P.

    1997-01-01

    The sucrose (Suc) synthase enzyme purified from barley (Hordeum vulgare L.) roots is a homotetramer that is composed of 90-kD type 1 Suc synthase (SS1) subunits. Km values for Suc and UDP were 30 mM and 5 [mu]M, respectively. This enzyme can also utilize ADP at 25% of the UDP rate. Anti-SS1 polyclonal antibodies, which recognized both SS1 and type 2 Suc synthase (SS2) (88-kD) subunits, and antibodies raised against a synthetic peptide, LANGSTDNNFV, which were specific for SS2, were used to study the spatial distribution of these subunits by immunoblot analysis and immunolocalization. Both SS1 and SS2 were abundantly expressed in endosperm, where they polymerize to form the five possible homo- and heterotetramers. Only SS1 homotetramers were detected in young leaves, where they appeared exclusively in phloem cells, and in roots, where expression was associated with cap cells and the vascular bundle. In the seed both SS1 and SS2 were present in endosperm, but only SS1 was apparent in the chalazal region, the nucellar projection, and the vascular bundle. The physiological implications for the difference in expression patterns observed are discussed with respect to the maize (Zea mays L.) model. PMID:12223688

  20. Spatial Distribution of Fungal Communities in an Arable Soil

    PubMed Central

    Moll, Julia; Hoppe, Björn; König, Stephan; Wubet, Tesfaye; Buscot, François; Krüger, Dirk

    2016-01-01

    Fungi are prominent drivers of ecological processes in soils, so that fungal communities across different soil ecosystems have been well investigated. However, for arable soils taxonomically resolved fine-scale studies including vertical itemization of fungal communities are still missing. Here, we combined a cloning/Sanger sequencing approach of the ITS/LSU region as marker for general fungi and of the partial SSU region for arbuscular mycorrhizal fungi (AMF) to characterize the microbiome in different maize soil habitats. Four compartments were analyzed over two annual cycles 2009 and 2010: a) ploughed soil in 0–10 cm, b) rooted soil in 40–50 cm, c) root-free soil in 60–70 cm soil depth and d) maize roots. Ascomycota was the most dominant phylum across all compartments. Fungal communities including yeasts and AMF differed strongly between compartments. Inter alia, Tetracladium, the overall largest MOTU (molecular operational taxonomic unit), occurred in all compartments, whereas Trichosporon dominated all soil compartments. Sequences belonging to unclassified Helotiales were forming the most abundant MOTUs exclusively present in roots. This study gives new insights on spatial distribution of fungi and helps to link fungal communities to specific ecological properties such as varying resources, which characterize particular niches of the heterogeneous soil environment. PMID:26840453

  1. A spatial query scheduler in a distributed environment

    NASA Astrophysics Data System (ADS)

    Zhou, Chunhui; Zhu, Xinyan; Xia, Yu; Su, Kehua

    2008-10-01

    Geographic Information System (GIS) is moving towards distribution and sharing. Distributed Spatial Database Systems (DSDBS) has attracted the attention of many scholars. This paper introduces the prospects of Distributed GIS (DGIS), and describes the definition of DSDBS and the existing problems. The researches in related fields are analyzed, including the research results in the traditional distributed relational database fields, the distributed spatial database fields and the spatial query optimization aspect. Grid technologies are developing forward, and grid will be turned into the standard distributed computing platform, therefore the application of DSDBS will be much broader than ever. The present studies on distributed spatial query focus on spatial join optimization. Researches on query scheduling are rare. In the process of constructing our test system for distributed spatial query, we find there are some replication nodes after the step of data localization. These nodes cause redundant computing of query processing. This paper gives a method to solve it based on the Query Scheduling Tree Model (QSTM). It also gives a detailed scheduling algorithm, and analyzes the effectiveness of the model and the algorithm.

  2. Cometary atmospheres: Modeling the spatial distribution of observed neutral radicals

    NASA Technical Reports Server (NTRS)

    Combi, M. R.

    1985-01-01

    Progress on modeling the spatial distributions of cometary radicals is described. The Monte Carlo particle-trajectory model was generalized to include the full time dependencies of initial comet expansion velocities, nucleus vaporization rates, photochemical lifetimes and photon emission rates which enter the problem through the comet's changing heliocentric distance and velocity. The effect of multiple collisions in the transition zone from collisional coupling to true free flow were also included. Currently available observations of the spatial distributions of the neutral radicals, as well as the latest available photochemical data were re-evaluated. Preliminary exploratory model results testing the effects of various processes on observable spatial distributions are also discussed.

  3. Spatial Distribution of Cyanobacteria in Modern Stromatolites

    NASA Technical Reports Server (NTRS)

    Prufert-Bebout, Lee; Dacles-Mariani, Jennifer; Herbert, Alice; DeVincenzi, Donald (Technical Monitor)

    2001-01-01

    Living stromatolites consist of complex microbial communities with distinct distribution patterns for different microbial groups. The cyanobacterial populations of Highborne Cay Bahamas exemplify this phenomenon. Field observations reveal distinct distribution patterns for several of these cyanobacterial species. To date 10 different cyanobacterial cultures, including both filamentous and endolithic species, have been isolated from these stromatolites. We will present data on the growth and motility characteristics as well as on the nutritional requirements of these isolates. These data will then be correlated with the field observed distributions for these species. Lastly laboratory simulations of stromatolites grown under various conditions of irradiance, flow and cyanobacterial community composition will be presented. These experiments allow us to evaluate our predictions regarding controls on cyanobacterial distribution.

  4. Temporal and spatial distribution of the meiobenthic community in Daya Bay, South China Sea

    NASA Astrophysics Data System (ADS)

    Tang, L.; Li, H. X.; Yan, Y.

    2012-04-01

    Spatial and temporal biodiversity patterns of the meiobenthos were studied for the first time in Daya Bay, which is a tropical semi-enclosed basin located in the South China Sea. The abundance, biomass, and composition of the meiobenthos and the basic environmental factors in the bay were investigated. The following 19 taxonomic groups were represented in the meiofauna: Nematoda, Copepoda, Polychaeta, Oligochaeta, Kinorhyncha, Gastrotricha, Ostracoda, Bivalvia, Turbellaria, Nemertinea, Sipuncula, Hydroida, Amphipoda, Cumacea, Halacaroidea, Priapulida, Echinodermata, Tanaidacea, and Rotifera. Total abundance and biomass of the meiobenthos showed great spatial and temporal variation, with mean values of 993.57 ± 455.36 ind cm-2 and 690.51 ± 210.64 μg 10 cm-2, respectively. Nematodes constituted 95.60 % of the total abundance and thus had the greatest effect on meiofauna quantity and distribution, followed by copepods (1.55 %) and polychaetes (1.39 %). Meiobenthos abundance was significantly negatively correlated with water depth at stations (r=-0.747, P<0.05) and significantly negatively correlated with silt-clay content (r=-0.516, P<0.01) and medium diameter (r=-0.499, P<0.01) of the sediment. Similar results were found for correlations of biomass and abundance of nematodes with environmental parameters. Polychaete abundance was positively correlated with the bottom water temperature (r=0.456, P<0.01). Meiobenthos abundance differed significantly among seasons (P<0.05), although no significant difference among stations and the interaction of station × season was detected by two-way ANOVA. In terms of vertical distribution, most of the meiobenthos was found in the surface layer of sediment. This pattern was apparent for nematodes and copepods, but a vertical distribution pattern for polychaetes was not as obvious. Based on the biotic indices and analyses of their correlations and variance, the diversity of this community was likely to be influenced by

  5. Modeling spatial distribution of the Unionid mussels and the core-satellite hypothesis

    USGS Publications Warehouse

    Lee, Hooi-Ling; DeAngelis, Donald L.; Koh, Hock Lye

    1998-01-01

    This paper discusses the spatial distribution patterns of the various species of the Unionid mussels as functions of their respective life-cycle characteristics. Computer simulations identify two life-cycle characteristics as major factors governing the abundance of a species, namely the movement range of their fish hosts and the success rate of the parasitic larval glochidia in finding fish hosts. Core mussels species have fish hosts with large movement range to disperse the parasitic larval glochidia to achieve high levels of abundance. Species associated with fish host of limited movement range require high success rate of finding fish host to achieve at least an intermediate level of abundance. Species with low success rate of finding fish hosts coupled with fish hosts having limited movement range exhibit satellite species characteristics, namely rare in numbers and sparse in distributions.

  6. Spatial Distributions and Interstellar Reaction Processes

    NASA Astrophysics Data System (ADS)

    Neill, Justin L.; Steber, Amanda L.; Muckle, Matt T.; Zaleski, Daniel P.; Lattanzi, Valerio; Spezzano, Silvia; McCarthy, Michael C.; Remijan, Anthony J.; Friedel, Douglas N.; Widicus Weaver, Susanna L.; Pate, Brooks H.

    2011-05-01

    Methyl formate presents a challenge for the conventional chemical mechanisms assumed to guide interstellar organic chemistry. Previous studies of potential formation pathways for methyl formate in interstellar clouds ruled out gas-phase chemistry as a major production route, and more recent chemical kinetics models indicate that it may form efficiently from radical-radical chemistry on ice surfaces. Yet, recent chemical imaging studies of methyl formate and molecules potentially related to its formation suggest that it may form through previously unexplored gas-phase chemistry. Motivated by these findings, two new gas-phase ion-molecule formation routes are proposed and characterized using electronic structure theory with conformational specificity. The proposed reactions, acid-catalyzed Fisher esterification and methyl cation transfer, both produce the less stable trans-conformational isomer of protonated methyl formate in relatively high abundance under the kinetically controlled conditions relevant to interstellar chemistry. Gas-phase neutral methyl formate can be produced from its protonated counterpart through either a dissociative electron recombination reaction or a proton transfer reaction to a molecule with larger proton affinity. Retention (or partial retention) of the conformation in these neutralization reactions would yield trans-methyl formate in an abundance that exceeds predictions under thermodynamic equilibrium at typical interstellar temperatures of

  7. Inner membrane fusion mediates spatial distribution of axonal mitochondria

    PubMed Central

    Yu, Yiyi; Lee, Hao-Chih; Chen, Kuan-Chieh; Suhan, Joseph; Qiu, Minhua; Ba, Qinle; Yang, Ge

    2016-01-01

    In eukaryotic cells, mitochondria form a dynamic interconnected network to respond to changing needs at different subcellular locations. A fundamental yet unanswered question regarding this network is whether, and if so how, local fusion and fission of individual mitochondria affect their global distribution. To address this question, we developed high-resolution computational image analysis techniques to examine the relations between mitochondrial fusion/fission and spatial distribution within the axon of Drosophila larval neurons. We found that stationary and moving mitochondria underwent fusion and fission regularly but followed different spatial distribution patterns and exhibited different morphology. Disruption of inner membrane fusion by knockdown of dOpa1, Drosophila Optic Atrophy 1, not only increased the spatial density of stationary and moving mitochondria but also changed their spatial distributions and morphology differentially. Knockdown of dOpa1 also impaired axonal transport of mitochondria. But the changed spatial distributions of mitochondria resulted primarily from disruption of inner membrane fusion because knockdown of Milton, a mitochondrial kinesin-1 adapter, caused similar transport velocity impairment but different spatial distributions. Together, our data reveals that stationary mitochondria within the axon interconnect with moving mitochondria through fusion and fission and that local inner membrane fusion between individual mitochondria mediates their global distribution. PMID:26742817

  8. Inner membrane fusion mediates spatial distribution of axonal mitochondria.

    PubMed

    Yu, Yiyi; Lee, Hao-Chih; Chen, Kuan-Chieh; Suhan, Joseph; Qiu, Minhua; Ba, Qinle; Yang, Ge

    2016-01-08

    In eukaryotic cells, mitochondria form a dynamic interconnected network to respond to changing needs at different subcellular locations. A fundamental yet unanswered question regarding this network is whether, and if so how, local fusion and fission of individual mitochondria affect their global distribution. To address this question, we developed high-resolution computational image analysis techniques to examine the relations between mitochondrial fusion/fission and spatial distribution within the axon of Drosophila larval neurons. We found that stationary and moving mitochondria underwent fusion and fission regularly but followed different spatial distribution patterns and exhibited different morphology. Disruption of inner membrane fusion by knockdown of dOpa1, Drosophila Optic Atrophy 1, not only increased the spatial density of stationary and moving mitochondria but also changed their spatial distributions and morphology differentially. Knockdown of dOpa1 also impaired axonal transport of mitochondria. But the changed spatial distributions of mitochondria resulted primarily from disruption of inner membrane fusion because knockdown of Milton, a mitochondrial kinesin-1 adapter, caused similar transport velocity impairment but different spatial distributions. Together, our data reveals that stationary mitochondria within the axon interconnect with moving mitochondria through fusion and fission and that local inner membrane fusion between individual mitochondria mediates their global distribution.

  9. Inner membrane fusion mediates spatial distribution of axonal mitochondria

    NASA Astrophysics Data System (ADS)

    Yu, Yiyi; Lee, Hao-Chih; Chen, Kuan-Chieh; Suhan, Joseph; Qiu, Minhua; Ba, Qinle; Yang, Ge

    2016-01-01

    In eukaryotic cells, mitochondria form a dynamic interconnected network to respond to changing needs at different subcellular locations. A fundamental yet unanswered question regarding this network is whether, and if so how, local fusion and fission of individual mitochondria affect their global distribution. To address this question, we developed high-resolution computational image analysis techniques to examine the relations between mitochondrial fusion/fission and spatial distribution within the axon of Drosophila larval neurons. We found that stationary and moving mitochondria underwent fusion and fission regularly but followed different spatial distribution patterns and exhibited different morphology. Disruption of inner membrane fusion by knockdown of dOpa1, Drosophila Optic Atrophy 1, not only increased the spatial density of stationary and moving mitochondria but also changed their spatial distributions and morphology differentially. Knockdown of dOpa1 also impaired axonal transport of mitochondria. But the changed spatial distributions of mitochondria resulted primarily from disruption of inner membrane fusion because knockdown of Milton, a mitochondrial kinesin-1 adapter, caused similar transport velocity impairment but different spatial distributions. Together, our data reveals that stationary mitochondria within the axon interconnect with moving mitochondria through fusion and fission and that local inner membrane fusion between individual mitochondria mediates their global distribution.

  10. Spatial Distribution of Small Water Body Types across Indiana Ecoregions

    EPA Science Inventory

    Due to their large numbers and biogeochemical activity, small water bodies (SWB), such as ponds and wetlands, can have substantial cumulative effects on hydrologic, biogeochemical, and biological processes; yet the spatial distributions of various SWB types are often unknown. Usi...

  11. Spatial Distribution of Small Water Body Types in Indiana Ecoregions

    EPA Science Inventory

    Due to their large numbers and biogeochemical activity, small water bodies (SWBs), such as ponds and wetlands, can have substantial cumulative effects on hydrologic and biogeochemical processes. Using updated National Wetland Inventory data, we describe the spatial distribution o...

  12. Convergence and divergence in a long-term old-field succession: the importance of spatial scale and species abundance.

    PubMed

    Li, Shao-Peng; Cadotte, Marc W; Meiners, Scott J; Pu, Zhichao; Fukami, Tadashi; Jiang, Lin

    2016-09-01

    Whether plant communities in a given region converge towards a particular stable state during succession has long been debated, but rarely tested at a sufficiently long time scale. By analysing a 50-year continuous study of post-agricultural secondary succession in New Jersey, USA, we show that the extent of community convergence varies with the spatial scale and species abundance classes. At the larger field scale, abundance-based dissimilarities among communities decreased over time, indicating convergence of dominant species, whereas incidence-based dissimilarities showed little temporal tend, indicating no sign of convergence. In contrast, plots within each field diverged in both species composition and abundance. Abundance-based successional rates decreased over time, whereas rare species and herbaceous plants showed little change in temporal turnover rates. Initial abandonment conditions only influenced community structure early in succession. Overall, our findings provide strong evidence for scale and abundance dependence of stochastic and deterministic processes over old-field succession.

  13. The Spatial Distribution of Attention within and across Objects

    ERIC Educational Resources Information Center

    Hollingworth, Andrew; Maxcey-Richard, Ashleigh M.; Vecera, Shaun P.

    2012-01-01

    Attention operates to select both spatial locations and perceptual objects. However, the specific mechanism by which attention is oriented to objects is not well understood. We examined the means by which object structure constrains the distribution of spatial attention (i.e., a "grouped array"). Using a modified version of the Egly et…

  14. Effect of Energetic Ion on Spatial Distribution of Recombining Plasma

    NASA Astrophysics Data System (ADS)

    Okamoto, A.; Daibo, A.; Kitajima, S.; Kumagai, T.; Takahashi, H.; Takahashi, T.; Tsubota, S.

    Spatial distribution of electron density is considered. By using a one-dimensional recombining plasma model, effects of transient energetic ion flux are investigated. The time response of the system against the transient flux is dominated by the recombination frequency. The magnitude of modification of the spatial distribution is determined by the ratio between the ionization due to the energetic ion and the recombination of the bulk plasma.

  15. Pelagic nekton abundance and distribution in the northern Sacramento–San Joaquin Delta, California

    USGS Publications Warehouse

    Feyrer, Frederick; Slater, Steven B.; Portz, Donald E.; Odom, Darren; Morgan-King, Tara L.; Brown, Larry R.

    2017-01-01

    Knowledge of the habitats occupied by species is fundamental for the development of effective conservation and management actions. The collapse of pelagic fish species in the Sacramento–San Joaquin Delta, California, has triggered a need to better understand factors that drive their distribution and abundance. A study was conducted in summer–fall 2014 in an attempt to identify physical and biological habitat conditions that drive the abundance and distribution of pelagic species in the northern region of the system. The study was conducted in the three largest channels in the northern Sacramento–San Joaquin Delta by dimension, volume, and flow capacity. The pelagic community was dominated by three nonnative species, Siberian prawn Exopalaemon modestus, which comprised 56% of the total number of organisms, and two fish species, Threadfin Shad Dorosoma petenense and Mississippi Silversides Menidia audens, which together comprised 43% of the total number of organisms. Total fish and total shrimp abundance were sensitive to the most extreme values of turbidity and temperature encountered and positively associated with total zooplankton biomass. The results suggested that habitat conditions in terminal channels, historically a common feature on the landscape, support higher abundances of pelagic species and zooplankton than open-ended channels. These results provide resource managers with useful information on the habitat associations of pelagic species and on how the future distribution and abundance of pelagic species will likely change in response to climate or other ecological factors.

  16. Abundance and distribution of mineral components associated with Moses Rock (kimberlite) diatreme

    NASA Technical Reports Server (NTRS)

    Mustard, J. F.; Pieters, C. M.

    1986-01-01

    The surface mineralogy in and around Moses Rock diatreme, a kimberlite-bearing dike in SW Utah, was examined using internally calibrated Airborne Imaging Spectrometer (AIS) data. Distinct near-infrared absorption characteristics of clays, gypsum, and serpentine (a key marker for kinberlite concentration) allowed the surface units containing these components to be identified spatially and the relative abundance of each component measured. Within the dike itself, channels and dispersed components of kimberlite and blocks of country rocks were accurately determined.

  17. Reconstructing Spatial Distributions from Anonymized Locations

    SciTech Connect

    Horey, James L; Forrest, Stephanie; Groat, Michael

    2012-01-01

    Devices such as mobile phones, tablets, and sensors are often equipped with GPS that accurately report a person's location. Combined with wireless communication, these devices enable a wide range of new social tools and applications. These same qualities, however, leave location-aware applications vulnerable to privacy violations. This paper introduces the Negative Quad Tree, a privacy protection method for location aware applications. The method is broadly applicable to applications that use spatial density information, such as social applications that measure the popularity of social venues. The method employs a simple anonymization algorithm running on mobile devices, and a more complex reconstruction algorithm on a central server. This strategy is well suited to low-powered mobile devices. The paper analyzes the accuracy of the reconstruction method in a variety of simulated and real-world settings and demonstrates that the method is accurate enough to be used in many real-world scenarios.

  18. Spatial distribution of Dermacentor reticulatus in Romania.

    PubMed

    Chitimia-Dobler, Lidia

    2015-11-30

    Dermacentor reticulatus (Fabricius, 1794), also known as the marsh tick or ornate dog tick is the second most significant vector (next to Ixodes ricinus) of protozoan, rickettsial and viral pathogens in Europe. Until now, only limited information on the distribution of D. reticulatus in Romania is available. A study was conducted on the distribution of D. reticulatus in Romania during 2012-2014. In this study, D. reticulatus was detected in 17 counties, in 14 of which the species was recorded for the first time. Tick activity was evident throughout the year, except during July and August. Additionally, D. reticulatus was recorded for the first time in Romania from wild boar, foxes and humans. These data suggest that this tick species has a broader geographic range and may have more veterinary and medical importance than previously known.

  19. Spatial and temporal patterns of abundance of Aedes aegypti L. (Stegomyia aegypti) and Aedes albopictus (Skuse) [Stegomyia albopictus (Skuse)] in southern Florida.

    PubMed

    Reiskind, M H; Lounibos, L P

    2013-12-01

    Invasion by mosquito vectors of disease may impact the distribution of resident mosquitoes, resulting in novel patterns of vectors and concomitant risk for disease. One example of such an impact is the invasion by Aedes albopictus (Skuse) [Stegomyia albopictus (Skuse)] (Diptera: Culicidae) of North America and this species' interaction with Aedes aegypti L. (Stegomyia aegypti L). We hypothesized that Ae. aegypti would be found in urban, coastal areas that experience hotter and drier conditions, whereas Ae. albopictus would be more commonly found in suburban and rural areas that are cooler and wetter. In addition, we hypothesized that Ae. aegypti would be more abundant early in the wet season, whereas Ae. albopictus would be more abundant later in the wet season. Urban areas were drier, hotter and contained more Ae. aegypti than suburban or rural areas. Aedes aegypti was relatively more abundant early in the wet season, whereas Ae. albopictus was more abundant in both the late wet season and the dry season. The spatial patterns of inter- and intraspecific encounters between these species were also described. The distribution of these mosquitoes is correlated with abiotic conditions, and with temperature, humidity and the relative availability of rain-filled containers. Understanding the ecological determinants of species distribution can provide insight into the biology of these vectors and important information for their appropriate control.

  20. Environmental correlates of species rank – abundance distributions in global drylands

    PubMed Central

    Ulrich, Werner; Soliveres, Santiago; Thomas, Andrew D.; Dougill, Andrew J.; Maestre, Fernando T.

    2016-01-01

    Theoretical models predict lognormal species abundance distributions (SADs) in stable and productive environments, with log-series SADs in less stable, dispersal driven communities. We studied patterns of relative species abundances of perennial vascular plants in global dryland communities to: i) assess the influence of climatic and soil characteristics on the observed SADs, ii) infer how environmental variability influences relative abundances, and iii) evaluate how colonisation dynamics and environmental filters shape abundance distributions. We fitted lognormal and log-series SADs to 91 sites containing at least 15 species of perennial vascular plants. The dependence of species relative abundances on soil and climate variables was assessed using general linear models. Irrespective of habitat type and latitude, the majority of the SADs (70.3%) were best described by a lognormal distribution. Lognormal SADs were associated with low annual precipitation, higher aridity, high soil carbon content, and higher variability of climate variables and soil nitrate. Our results do not corroborate models predicting the prevalence of log-series SADs in dryland communities. As lognormal SADs were particularly associated with sites with drier conditions and a higher environmental variability, we reject models linking lognormality to environmental stability and high productivity conditions. Instead our results point to the prevalence of lognormal SADs in heterogeneous environments, allowing for more evenly distributed plant communities, or in stressful ecosystems, which are generally shaped by strong habitat filters and limited colonisation. This suggests that drylands may be resilient to environmental changes because the many species with intermediate relative abundances could take over ecosystem functioning if the environment becomes suboptimal for dominant species. PMID:27330404

  1. EMBATTLED BIVALVES: BIOGEOGRAPHIC DISTRIBUTIONS AND ABUNDANCES FROM THE BEAUFORT SEA TO THE GULF OF CALIFORNIA

    EPA Science Inventory

    As part of an EPA/USGS project to predict the relative vulnerability of near-coastal species to climate change, we have synthesized in a web-based tool, the Coastal Biogeographic Risk Analysis Tool (CBRAT), the biogeographic distributions and abundances of bivalves, found in dept...

  2. Factors determining the distribution and abundance of Dreissena polymorpha in lakes, dam reserviors and channels

    SciTech Connect

    Karatayev, A.

    1995-06-01

    This article addresses the several factors affecting the distribution and abundance of Dreissena polymorphia in bodies of water. Factors covered include: (1) salinity, (2) oxygen level, (3) temperature, (4) substrate, (5) depth, and (6) water chemistry. The analysis of the data allowed the specification of limiting or optimal concentrations of the principle abiotic parameters.

  3. Rényi entropy, abundance distribution, and the equivalence of ensembles

    NASA Astrophysics Data System (ADS)

    Mora, Thierry; Walczak, Aleksandra M.

    2016-05-01

    Distributions of abundances or frequencies play an important role in many fields of science, from biology to sociology, as does the Rényi entropy, which measures the diversity of a statistical ensemble. We derive a mathematical relation between the abundance distribution and the Rényi entropy, by analogy with the equivalence of ensembles in thermodynamics. The abundance distribution is mapped onto the density of states, and the Rényi entropy to the free energy. The two quantities are related in the thermodynamic limit by a Legendre transform, by virtue of the equivalence between the micro-canonical and canonical ensembles. In this limit, we show how the Rényi entropy can be constructed geometrically from rank-frequency plots. This mapping predicts that non-concave regions of the rank-frequency curve should result in kinks in the Rényi entropy as a function of its order. We illustrate our results on simple examples, and emphasize the limitations of the equivalence of ensembles when a thermodynamic limit is not well defined. Our results help choose reliable diversity measures based on the experimental accuracy of the abundance distributions in particular frequency ranges.

  4. Rényi entropy, abundance distribution, and the equivalence of ensembles.

    PubMed

    Mora, Thierry; Walczak, Aleksandra M

    2016-05-01

    Distributions of abundances or frequencies play an important role in many fields of science, from biology to sociology, as does the Rényi entropy, which measures the diversity of a statistical ensemble. We derive a mathematical relation between the abundance distribution and the Rényi entropy, by analogy with the equivalence of ensembles in thermodynamics. The abundance distribution is mapped onto the density of states, and the Rényi entropy to the free energy. The two quantities are related in the thermodynamic limit by a Legendre transform, by virtue of the equivalence between the micro-canonical and canonical ensembles. In this limit, we show how the Rényi entropy can be constructed geometrically from rank-frequency plots. This mapping predicts that non-concave regions of the rank-frequency curve should result in kinks in the Rényi entropy as a function of its order. We illustrate our results on simple examples, and emphasize the limitations of the equivalence of ensembles when a thermodynamic limit is not well defined. Our results help choose reliable diversity measures based on the experimental accuracy of the abundance distributions in particular frequency ranges.

  5. BIVALVE BIOGEOGRAPHIC DISTRIBUTIONS, ABUNDANCES, AND CLIMATE VULNERABILITY FROM THE BEAUFORT SEA TO THE GULF OF CALIFORNIA

    EPA Science Inventory

    As part of an U.S. EPA/USGS project to predict the relative vulnerability of near-coastal species to climate change along the Pacific Coast, we have synthesized the biogeographic distributions and abundances of bivalves found in depths <200 m. We have included the twelve &ldqu...

  6. A determination of the thick disk chemical abundance distribution: Implications for galaxy evolution

    NASA Technical Reports Server (NTRS)

    Gilmore, Gerard; Wyse, Rosemary F. G.; Jones, Bryn J.

    1995-01-01

    We present a determination of the thick disk iron abundance distribution obtained from an in situ sample of F/G stars. These stars are faint, 15 less than or approximately = V less than or approximately = 18, selected on the basis of color, being a subset of the larger survey of Gilmore and Wyse designed to determine the properties of the stellar populations several kiloparsecs from the Sun. The fields studied in the present paper probe the iron abundance distribution of the stellar populations of the galaxy at 500-3000 pc above the plane, at the solar Galactocentric distance. The derived chemical abundance distributions are consistent with no metallicity gradients in the thick disk over this range of vertical distance, and with an iron abundance distribution for the thick disk that has a peak at -0.7 dex. The lack of a vertical gradient argues against slow, dissipational settling as a mechanism for the formation of the thick disk. The photometric and metallicity data support a turn-off of the thick disk that is comparable in age to the metal-rich globular clusters, or greater than or approximately = 12 Gyr, and are consistent with a spread to older ages.

  7. Distribution, abundance and diversity of the extremely halophilic bacterium Salinibacter ruber

    PubMed Central

    Antón, Josefa; Peña, Arantxa; Santos, Fernando; Martínez-García, Manuel; Schmitt-Kopplin, Philippe; Rosselló-Mora, Ramon

    2008-01-01

    Since its discovery in 1998, representatives of the extremely halophilic bacterium Salinibacter ruber have been found in many hypersaline environments across the world, including coastal and solar salterns and solar lakes. Here, we review the available information about the distribution, abundance and diversity of this member of the Bacteroidetes. PMID:18957079

  8. Critical metals in manganese nodules from the Cook Islands EEZ, abundances and distributions

    USGS Publications Warehouse

    Hein, James R.; Spinardi, Francesca; Okamoto, Nobuyuki; Mizell, Kira; Thorburn, Darryl; Tawake, Akuila

    2015-01-01

    Compiled data from a series of four cruises by the Japan International Cooperation Agency and the Mining agency of Japan from 1985 to 2000 were used to generate a map that defines the statistical distribution of nodule abundance throughout the EEZ, except the Manihiki Plateau. The abundance distribution map shows a belt of high nodule abundance (19–45 kg/m2) that starts in the southeast corner of the EEZ, runs northwest, and also bifurcates into a SW trending branch. Small, isolated areas contain abundances of nodules of up to 58 kg/m2. Six ~ 20,000 km2 areas of particularly high abundance were chosen to represent potential exploration areas, and maps for metal concentration were generated to visualize metal distribution and to extrapolate estimated metal tonnages within the six sites and the EEZ as a whole. Grades for Mn, Cu, and Ni are low in CIs nodules in areas of high abundance; however, Ti, Co, and REY show high contents where nodule abundances are high. Of the six areas identified to represent a range of metal contents, one at the northern end of the N-S abundance main belt optimizes the most metals and would yield the highest dry metric tons for Mn (61,002,292), Ni (1,247,834), Mo (186,166), V (356,247), W (30,215), and Zr (195,323). When compared with the Clarion–Clipperton Zone, the CIs nodules show higher nodule abundances (> 25 kg/m2 over ~ 123,844 km2), and are more enriched in the green-tech, high-tech, and energy metals Co, Ti, Te, Nb, REY, Pt, and Zr. The CIs EEZ shows a significant resource potential for these critical metals due to their high prices, high demand, and the high nodule abundance, which will allow for a smaller footprint for a 20-year mine site and therefore smaller environmental impact.

  9. Small-scale temporal and spatial variability in the abundance of plastic pellets on sandy beaches: Methodological considerations for estimating the input of microplastics.

    PubMed

    Moreira, Fabiana Tavares; Prantoni, Alessandro Lívio; Martini, Bruno; de Abreu, Michelle Alves; Stoiev, Sérgio Biato; Turra, Alexander

    2016-01-15

    Microplastics such as pellets have been reported for many years on sandy beaches around the globe. Nevertheless, high variability is observed in their estimates and distribution patterns across the beach environment are still to be unravelled. Here, we investigate the small-scale temporal and spatial variability in the abundance of pellets in the intertidal zone of a sandy beach and evaluate factors that can increase the variability in data sets. The abundance of pellets was estimated during twelve consecutive tidal cycles, identifying the position of the high tide between cycles and sampling drift-lines across the intertidal zone. We demonstrate that beach dynamic processes such as the overlap of strandlines and artefacts of the methods can increase the small-scale variability. The results obtained are discussed in terms of the methodological considerations needed to understand the distribution of pellets in the beach environment, with special implications for studies focused on patterns of input.

  10. Distribution and abundance of saltcedar and Russian olive in the western United States

    USGS Publications Warehouse

    Nagler, Pamela L.; Glenn, Edward P.; Jarnevich, Catherine S.; Shafroth, Patrick B.

    2011-01-01

    Over the past century, two introduced Eurasian trees, saltcedar (Tamarix spp.) and Russian olive (Elaeagnus angustifolia) have become wide spread on western United States of American (U.S.) rivers. This paper reviews the literature on the following five key areas related to their distribution and abundance in the western United States: (1) the history of introduction, planting, and spread of saltcedar and Russian olive; (2) their current distribution; (3) their current abundance; (4) factors controlling their current distribution and abundance; and (5) models that have been developed to predict their future distribution and abundance. Saltcedar and Russian olive are now the third and fourth most frequently occurring woody riparian plants and the second and fifth most abundant species (out of 42 native and non-native species) along rivers in the western United States. Currently there is not a precise estimate of the areas that these species occupy in the entire West. Climatic variables are important determinants of their distribution and abundance. For example, saltcedar is limited by its sensitivity to hard freezes, whereas Russian olive appears to have a chilling requirement for bud break and seed germination, and can presumably survive colder winter temperatures. Either species can be dominant, co-dominant or sub-dominant relative to native species on a given river system. A number of environmental factors such as water availability, soil salinity, degree of stream flow regulation, and fire frequency can influence the abundance of these species relative to native species. Numerous studies suggest that both species have spread on western rivers primarily through a replacement process, whereby stress-tolerant species have moved into expanded niches that are no longer suitable for mesic native pioneer species. Better maps of current distribution and rigorous monitoring of distributional changes though time can help to resolve differences in predictions of potential

  11. Spatially Explicit Modeling Reveals Cephalopod Distributions Match Contrasting Trophic Pathways in the Western Mediterranean Sea

    PubMed Central

    Puerta, Patricia; Hunsicker, Mary E.; Quetglas, Antoni; Álvarez-Berastegui, Diego; Esteban, Antonio; González, María; Hidalgo, Manuel

    2015-01-01

    Populations of the same species can experience different responses to the environment throughout their distributional range as a result of spatial and temporal heterogeneity in habitat conditions. This highlights the importance of understanding the processes governing species distribution at local scales. However, research on species distribution often averages environmental covariates across large geographic areas, missing variability in population-environment interactions within geographically distinct regions. We used spatially explicit models to identify interactions between species and environmental, including chlorophyll a (Chla) and sea surface temperature (SST), and trophic (prey density) conditions, along with processes governing the distribution of two cephalopods with contrasting life-histories (octopus and squid) across the western Mediterranean Sea. This approach is relevant for cephalopods, since their population dynamics are especially sensitive to variations in habitat conditions and rarely stable in abundance and location. The regional distributions of the two cephalopod species matched two different trophic pathways present in the western Mediterranean Sea, associated with the Gulf of Lion upwelling and the Ebro river discharges respectively. The effects of the studied environmental and trophic conditions were spatially variant in both species, with usually stronger effects along their distributional boundaries. We identify areas where prey availability limited the abundance of cephalopod populations as well as contrasting effects of temperature in the warmest regions. Despite distributional patterns matching productive areas, a general negative effect of Chla on cephalopod densities suggests that competition pressure is common in the study area. Additionally, results highlight the importance of trophic interactions, beyond other common environmental factors, in shaping the distribution of cephalopod populations. Our study presents a valuable

  12. Spatially Explicit Modeling Reveals Cephalopod Distributions Match Contrasting Trophic Pathways in the Western Mediterranean Sea.

    PubMed

    Puerta, Patricia; Hunsicker, Mary E; Quetglas, Antoni; Álvarez-Berastegui, Diego; Esteban, Antonio; González, María; Hidalgo, Manuel

    2015-01-01

    Populations of the same species can experience different responses to the environment throughout their distributional range as a result of spatial and temporal heterogeneity in habitat conditions. This highlights the importance of understanding the processes governing species distribution at local scales. However, research on species distribution often averages environmental covariates across large geographic areas, missing variability in population-environment interactions within geographically distinct regions. We used spatially explicit models to identify interactions between species and environmental, including chlorophyll a (Chla) and sea surface temperature (SST), and trophic (prey density) conditions, along with processes governing the distribution of two cephalopods with contrasting life-histories (octopus and squid) across the western Mediterranean Sea. This approach is relevant for cephalopods, since their population dynamics are especially sensitive to variations in habitat conditions and rarely stable in abundance and location. The regional distributions of the two cephalopod species matched two different trophic pathways present in the western Mediterranean Sea, associated with the Gulf of Lion upwelling and the Ebro river discharges respectively. The effects of the studied environmental and trophic conditions were spatially variant in both species, with usually stronger effects along their distributional boundaries. We identify areas where prey availability limited the abundance of cephalopod populations as well as contrasting effects of temperature in the warmest regions. Despite distributional patterns matching productive areas, a general negative effect of Chla on cephalopod densities suggests that competition pressure is common in the study area. Additionally, results highlight the importance of trophic interactions, beyond other common environmental factors, in shaping the distribution of cephalopod populations. Our study presents a valuable

  13. Spatial distribution visualization of PWM continuous variable-rate spray

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Chemical application is a dynamic spatial distribution process, during which spray liquid covers the targets with certain thickness and uniformity. Therefore, it is important to study the 2-D and 3-D (dimensional) spray distribution to evaluate spraying quality. The curve-surface generation methods ...

  14. Spatial and temporal variation of macro-, meso- and microplastic abundance on a remote coral island of the Maldives, Indian Ocean.

    PubMed

    Imhof, Hannes K; Sigl, Robert; Brauer, Emilia; Feyl, Sabine; Giesemann, Philipp; Klink, Saskia; Leupolz, Kathrin; Löder, Martin G J; Löschel, Lena A; Missun, Jan; Muszynski, Sarah; Ramsperger, Anja F R M; Schrank, Isabella; Speck, Susan; Steibl, Sebastian; Trotter, Benjamin; Winter, Isabel; Laforsch, Christian

    2017-03-15

    Plastic debris is ubiquitous in the marine environment and the world's shores represent a major sink. However, knowledge about plastic abundance in remote areas is scarce. Therefore, plastic abundance was investigated on a small island of the Maldives. Plastic debris (>1mm) was sampled once in natural long-term accumulation zones at the north shore and at the high tide drift line of the south shore on seven consecutive days to quantify daily plastic accumulation. Reliable identification of plastic debris was ensured by FTIR spectroscopy. Despite the remoteness of the island a considerable amount of plastic debris was present. At both sites a high variability in plastic abundance on a spatial and temporal scale was observed, which may be best explained by environmental factors. In addition, our results show that snapshot sampling may deliver biased results and indicate that future monitoring programs should consider spatial and temporal variation of plastic deposition.

  15. Guaranteed spatial initialization of distributed spacecraft formations

    NASA Technical Reports Server (NTRS)

    Scharf, Daniel P.; Ploen, Scott R.; Hadaegh, Fred Y.; Sohl, Garett A.

    2004-01-01

    In a precious paper the authors developed a formation initialization (FI) algorithm for a deep space, N-spacecraft formation. It was demonstrated analytically that this FI contribution of this paper is to extend this planar guarantee to deep space formations with arbitrary initial conditions. As part of the guarantee of initialization, a bound on the time-to-initialize is obtained. The guaranteed FI algorithm is then demonstrated for a two-spacecraft formation with realistic deep space mission constraints (e.g. limited field-of-view relative sensors and attitude constraints). The two-spacecraft scenario is challenging in that it has the least relative sensor field-of-view overlap. Finally, for this scenario, the distribution of time-to-initialize is characterized through a 150,000-case Monte Carlo analysis.

  16. The association between spatial distribution of common malignancies and soil lead concentration in Isfahan, Iran

    PubMed Central

    Rashidi, Masoumeh; Rameshat, Mohammad Hossein; Gharib, Hadi; Rouzbahani, Reza; Ghias, Majid; Poursafa, Parinaz

    2012-01-01

    Background: Malignancies are primarily environmental diseases mostly attributed to environmental factors. By plotting the prevalence and spatial distribution maps, important differences can be observed in detail. This study aimed to determine the association between map distribution of malignancies and the geological phenomena of lead (Pb) accumulation in soil in the province of Isfahan, Iran. Methods: Spatial distribution maps of malignant diseases were plotted by using data recorded during 2007 to 2009 in the Isfahan Cancer Registry Program. Data on Pb accumulation in soil was obtained from the National Geological Survey and Mineral Exploration. Pb concentrations were documented in three parts of agricultural, non-agricultural, urban, and industrial land. The geographical mapping of cancers and soil Pb were then incorporated into a geographic information system (GIS) to create a spatial distribution model. Results: The spatial distributions of ten common malignant diseases in the province, i.e. skin cancers, hematological malignancies, and breast cancers, followed by other malignancies were scattered based on Pb distribution. In fact, common cancers were more prevalent in the parts of the province where soil Pb was more abundant. Conclusion: The findings of this study underscore the importance of preventing Pb exposure and controlling industrial production of Pb. The data is also important to establish further effects modeling for cancers. Moreover, physicians and health professionals should consider the impact of environmental factors on their patients’ health. PMID:23267396

  17. Quantifying quagga mussel veliger abundance and distribution in Copper Basin Reservoir (California) using acoustic backscatter.

    PubMed

    Anderson, Michael A; Taylor, William D

    2011-11-01

    Quagga mussels (Dreissena bugensis) have been linked to oligotrophication of lakes, alteration of aquatic food webs, and fouling of infrastructure associated with water supply and power generation, causing potentially billions of dollars in direct and indirect damages. Understanding their abundance and distribution is key in slowing their advance, assessing their potential impacts, and evaluating effectiveness of control strategies. Volume backscatter strength (Sv) measurements at 201- and 430-kHz were compared with quagga mussel veliger and zooplankton abundances determined from samples collected using a Wisconsin closing net from the Copper Basin Reservoir on the Colorado River Aqueduct. The plankton within the lower portion of the water column (>18 m depth) was strongly dominated by D-shaped quagga mussel veligers, comprising up to 95-99% of the community, and allowed direct empirical measurement of their mean backscattering cross-section. The upper 0-18 m of the water column contained a smaller relative proportion of veligers based upon net sampling. The difference in mean volume backscatter strength at these two frequencies was found to decrease with decreasing zooplankton abundance (r(2) = 0.94), allowing for correction of Sv due to the contribution of zooplankton and the determination of veliger abundance in the reservoir. Hydroacoustic measurements revealed veligers were often present at high abundances (up to 100-200 ind L(-1)) in a thin 1-2 m layer at the thermocline, with considerable patchiness in their distribution observed along a 700 m transect on the reservoir. Under suitable conditions, hydroacoustic measurements can rapidly provide detailed information on the abundance and distribution of quagga mussel veligers over large areas with high horizontal and vertical resolution.

  18. Temporal and spatial variations of abundance of phycocyanin- and phycoerythrin-rich Synechococcus in Pearl River Estuary and adjacent coastal area

    NASA Astrophysics Data System (ADS)

    Jiang, Tao; Chai, Chao; Wang, Jifang; Zhang, Ling; Cen, Jingyi; Lu, Songhui

    2016-10-01

    Three surveys were carried out in Pearl River Estuary and adjacent coastal area in May, August, and November, 2013, to investigate the temporal and spatial variations of abundance of phycoerythrin-rich Synechococcus (PE-rich SYN) and phycocyanin-rich Synechococcus (PC-rich SYN). The effects of environmental factors on the alternation of the different Synechococcus groups were also elucidated. PE-rich SYN was detected in three surveys, whereas PC-rich SYN was detected in May and August, but not in November. The highest abundances of PE-rich SYN and PC-rich SYN were recorded in August and May, with mean values of 74.17×103 and 189.92×103 cells mL-1, respectively. From May to November, the relative abundance of PE-rich SYN increased, whereas that of PC-rich SYN declined. PE-rich and PC-rich SYN presented similar horizontal distributions with high abundance in the southern estuary in May, and in the western estuary in August. The abundances of PE-rich and PC-rich SYN were high at 27-32°C and salinity of 10-20. PC-rich SYN was not detected at < 24°C, and PC:PE-rich SYN decreased in abundance with salinity increase. When less than 20 mg L-1, suspended particulate matter (SPM) was helpful for Synechococcus growth. PE-rich SYN decreased in abundance when the concentration of dissolved inorganic nitrogen increased in May and November, and the concentration of phosphate increased in November. However, PC-rich SYN abundance and nutrients showed no correlation. Principal component analysis and regression analysis indicated that PE-rich SYN significantly correlated with the principal components that were affected by environmental factors.

  19. New image processing software for analyzing object size-frequency distributions, geometry, orientation, and spatial distribution

    NASA Astrophysics Data System (ADS)

    Beggan, Ciarán; Hamilton, Christopher W.

    2010-04-01

    Geological Image Analysis Software (GIAS) combines basic tools for calculating object area, abundance, radius, perimeter, eccentricity, orientation, and centroid location, with the first automated method for characterizing the aerial distribution of objects using sample-size-dependent nearest neighbor (NN) statistics. The NN analyses include tests for (1) Poisson, (2) Normalized Poisson, (3) Scavenged k=1, and (4) Scavenged k=2 NN distributions. GIAS is implemented in MATLAB with a Graphical User Interface (GUI) that is available as pre-parsed pseudocode for use with MATLAB, or as a stand-alone application that runs on Windows and Unix systems. GIAS can process raster data (e.g., satellite imagery, photomicrographs, etc.) and tables of object coordinates to characterize the size, geometry, orientation, and spatial organization of a wide range of geological features. This information expedites quantitative measurements of 2D object properties, provides criteria for validating the use of stereology to transform 2D object sections into 3D models, and establishes a standardized NN methodology that can be used to compare the results of different geospatial studies and identify objects using non-morphological parameters.

  20. Spatial distributions of grass shrimp (Palaemonetes pugio) populations in southeastern estuarine ecosystems influenced by urbanization

    SciTech Connect

    Scott, G.; Daugomah, J.; Devane, J.; Porter, D.; Edwards, D.

    1995-12-31

    Urbanization of coastal regions has resulted in the increased discharge of polycyclic aromatic hydrocarbons trace metals and habitat changes/modifications in adjacent upland areas which may affect grass shrimp populations. A study was conducted comparing larval abundance and adult grass shrimp biomass, abundance, size structure and sex ratios in an urbanized estuary, Murrells Inlet with pristine North Inlet, a NOAA national estuarine research reserve and sanctuary site. A total of 60 sites were sampled during the peak of grass shrimp abundance and compared in terms of spatial distributions and other relevant ancillary information. Factors such as sediment contaminant levels, physico-chemical parameters and land-use habitat modification were statistically compared using a Geographical Information Processing (GIP) techniques and appropriate spatial statistical methods. GIP results indicated similar levels of larval abundance in both estuaries and identified specific nursery ground regions in both estuaries. Adult grass shrimp abundances were greatly reduced in urban areas and grass shrimp desert regions were identified. These areas were correlated with regions having high levels of chemical contaminants and greatest physical disturbances. The mortality rate between larval and adult stages was much higher in urban areas suggesting that urbanization had a profound impact on grass shrimp.

  1. Distribution, abundance, and habitat associations of a large bivalve (Panopea generosa) in a eutrophic, fjord estuary

    USGS Publications Warehouse

    Mcdonald, P. Sean; Essington, Timothy E.; Davis, Jonathan P.; Galloway, Aaron W.E.; Stevick, Bethany C.; Jensen, Gregory C.; Vanblaricom, Glenn R.; Armstrong, David A.

    2015-01-01

    Marine bivalves are important ecosystem constituents and frequently support valuable fisheries. In many nearshore areas, human disturbance—including declining habitat and water quality—can affect the distribution and abundance of bivalve populations, and complicate ecosystem and fishery management assessments. Infaunal bivalves, in particular, are frequently cryptic and difficult to detect; thus, assessing potential impacts on their populations requires suitable, scalable methods for estimating abundance and distribution. In this study, population size of a common benthic bivalve (the geoduck Panopea generosa) is estimated with a Bayesian habitat-based model fit to scuba and tethered camera data in Hood Canal, a fjord basin in Washington state. Densities declined more than two orders of magnitude along a north—south gradient, concomitant with patterns of deepwater dissolved oxygen, and intensity and duration of seasonal hypoxia. Across the basin, geoducks were most abundant in loose, unconsolidated, sand substrate. The current study demonstrates the utility of using scuba, tethered video, and habitat models to estimate the abundance and distribution of a large infaunal bivalve at a regional (385-km2) scale.

  2. Elemental Abundance Distributions in Basalt Clays and Meteorites: Is It a Biosignature?

    NASA Technical Reports Server (NTRS)

    Fisk, M. R.; Storrie-Lombardi, M. C.; Joseph, J.

    2005-01-01

    Volcanic glass altered by microorganisms exhibits distinctive textures differing significantly from abiotic alteration [1-4]. We have previously presented morphological evidence of bioweathering in sub-oceanic basalt glass [5] and olivine [6], and noted similar alterations in Nakhla [7]. We have also introduced an autonomous Bayesian probabilistic classification methodology to identify biotic and abiotic alteration in sub-oceanic basalts using elemental abundance data [8]. We now present data from multiple sub-oceanic sites addressing the more general question of utilizing elemental abundance distribution in clays as a valid biosignature for the exploration of putative clay alteration products in meteorites.

  3. Spatial and seasonal patterns in abundance and age-composition of Calanus finmarchicus in the Gulf of Maine and on Georges Bank: 1977 1987

    NASA Astrophysics Data System (ADS)

    Meise, C. J.; O'Reilly, J. E.

    The mean seasonal cycle and distribution of various life history stages of C. finmarchicus throughout the Georges Bank (GB)-Gulf of Maine (GOM) region were characterized based on 5966 MARMAP zooplankton samples collected during 106 surveys over a 10-year period (autumn 1977-autumn 1987). A high degree of seasonal and spatial variability in C. finmarchicus abundance throughout the region was evident in contoured portrayals of data, grouped into standard stations and 2-month "seasons". Eight subareas of the Gulf of Maine-Georges Bank region were identified through cluster analysis of standard stations having similar seasonal patterns in mean abundance of C. finmarchicus stages C3, C4, C5 and adults. These were the northern Gulf of Maine (Northern GOM); southern Gulf of Maine (Southern GOM); Scotian Shelf-coastal Gulf of Maine (Scotian-Coastal GOM); Mass Bay; tidally mixed Georges Bank (Mixed GB); tidal front on the Bank separating mixed from seasonally stratified water (Tidal Front GB); seasonally stratified water on the Bank (Stratified GB) and the Continental Slope adjacent to Georges Bank (SLOPE). A distinct seasonal abundance cycle was present in all subareas, but, the magnitude and timing of annual maxima varied greatly among subareas. Peak abundance was reached early (March-April) in Mixed GB, Tidal Front GB and Mass Bay, and late (July-August) in Northern GOM and Scotian-Coastal GOM. Remaining subareas had maxima in May-June. Abundance increased 10-fold from January-February to March-April and decreased sharply from July-August to September-October in all areas except southern GOM and northern GOM. The amplitude of the annual cycle was weakest in northern GOM and southern GOM, where high concentrations of C. finmarchicus persisted year-round, and strongest in the tidally mixed shallow water on GB, where the sparsest densities of C. finmarchicus occurred most of the year. Abundance curves for the various areas converged in March-April, when C. finmarchicus was

  4. Large spatial scale variability in bathyal macrobenthos abundance, biomass, α- and β-diversity along the Mediterranean continental margin.

    PubMed

    Baldrighi, Elisa; Lavaleye, Marc; Aliani, Stefano; Conversi, Alessandra; Manini, Elena

    2014-01-01

    The large-scale deep-sea biodiversity distribution of the benthic fauna was explored in the Mediterranean Sea, which can be seen as a miniature model of the oceans of the world. Within the framework of the BIOFUN project ("Biodiversity and Ecosystem Functioning in Contrasting Southern European Deep-sea Environments: from viruses to megafauna"), we investigated the large spatial scale variability (over >1,000 km) of the bathyal macrofauna communities that inhabit the Mediterranean basin, and their relationships with the environmental variables. The macrofauna abundance, biomass, community structure and functional diversity were analysed and the α-diversity and β-diversity were estimated across six selected slope areas at different longitudes and along three main depths. The macrobenthic standing stock and α-diversity were lower in the deep-sea sediments of the eastern Mediterranean basin, compared to the western and central basins. The macrofaunal standing stock and diversity decreased significantly from the upper bathyal to the lower bathyal slope stations. The major changes in the community composition of the higher taxa and in the trophic (functional) structure occurred at different longitudes, rather than at increasing water depth. For the β-diversity, very high dissimilarities emerged at all levels: (i) between basins; (ii) between slopes within the same basin; and (iii) between stations at different depths; this therefore demonstrates the high macrofaunal diversity of the Mediterranean basins at large spatial scales. Overall, the food sources (i.e., quantity and quality) that characterised the west, central and eastern Mediterranean basins, as well as sediment grain size, appear to influence the macrobenthic standing stock and the biodiversity along the different slope areas.

  5. Large Spatial Scale Variability in Bathyal Macrobenthos Abundance, Biomass, α- and β-Diversity along the Mediterranean Continental Margin

    PubMed Central

    Baldrighi, Elisa; Lavaleye, Marc; Aliani, Stefano; Conversi, Alessandra; Manini, Elena

    2014-01-01

    The large-scale deep-sea biodiversity distribution of the benthic fauna was explored in the Mediterranean Sea, which can be seen as a miniature model of the oceans of the world. Within the framework of the BIOFUN project (“Biodiversity and Ecosystem Functioning in Contrasting Southern European Deep-sea Environments: from viruses to megafauna”), we investigated the large spatial scale variability (over >1,000 km) of the bathyal macrofauna communities that inhabit the Mediterranean basin, and their relationships with the environmental variables. The macrofauna abundance, biomass, community structure and functional diversity were analysed and the α-diversity and β-diversity were estimated across six selected slope areas at different longitudes and along three main depths. The macrobenthic standing stock and α-diversity were lower in the deep-sea sediments of the eastern Mediterranean basin, compared to the western and central basins. The macrofaunal standing stock and diversity decreased significantly from the upper bathyal to the lower bathyal slope stations. The major changes in the community composition of the higher taxa and in the trophic (functional) structure occurred at different longitudes, rather than at increasing water depth. For the β-diversity, very high dissimilarities emerged at all levels: (i) between basins; (ii) between slopes within the same basin; and (iii) between stations at different depths; this therefore demonstrates the high macrofaunal diversity of the Mediterranean basins at large spatial scales. Overall, the food sources (i.e., quantity and quality) that characterised the west, central and eastern Mediterranean basins, as well as sediment grain size, appear to influence the macrobenthic standing stock and the biodiversity along the different slope areas. PMID:25225909

  6. Distribution-abundance relationship for passerines breeding in Tunisian oases: test of the sampling hypothesis.

    PubMed

    Selmi, Slaheddine; Boulinier, Thierry

    2004-05-01

    The positive relationship between local abundance and distribution of species is a widely recognized pattern in community ecology. However, it has been suggested that this relationship can simply be an artefact of sampling because locally rare species are less detectable then locally abundant ones, and hence their distribution can easily be underestimated. Here, we use count data to investigate the relationship between distribution and abundance of passerines breeding in a sample of oases from southern Tunisia, and we provide a test of the sampling artefact hypothesis. In particular, we checked for a difference in detection probability between localized and widespread species, and we tested if increasing the sampling effort affects the significance of the relationship. A significant positive relationship between the average local abundance of passerine species and the proportion of occupied oases was found. The use of a capture-recapture approach allowed us to estimate and to compare the detection probabilities of localized and widespread species subsets. We found that localized species were locally less detectable than widespread species, which is consistent with the main assumption of the sampling artefact hypothesis. However, increasing the detection probability of species by conducting more counts did not affect the significance of the relationship, which did not give support to the sampling artefact hypothesis. Our work implies that sampling contributed to the distribution-abundance relationship we found, but that it is unlikely that such a relationship could entirely be explained by an artefact of sampling. It also underlines the insight that can be gained by using probabilistic approaches of estimating species number and detection probability when attempting to disentangle sampling from ecological effects in community ecology studies.

  7. Nearshore distribution and abundance of Dungeness crabs in Glacier Bay National Park, Alaska

    USGS Publications Warehouse

    O'Clair, Charles E.; Freese, J. Lincoln; Stone, Robert P.; Shirley, Thomas C.; Leder, Erica H.; Taggart, S. James; Kruse, Gordon H.; Engstrom, Daniel R.

    1995-01-01

    As part of an ongoing, multi-agency study to determine the effects of closure of the commercial fishery for Dungeness crabs, Cancer magister, on crab population structure we examined patterns of distribution and abundance of crabs in nearshore habitats at five locations in and near Glacier Bay National Park. Sampling was conducted in April and September 1992 and April 1993 prior to the anticipated closure of the fishery in the park. Divers censused crabs by sex and reproductive state (ovigerous/nonovigerous females) along belt transects (2m x 100m) laid perpendicular to shore in the depth range 0 m (mean lower low water) to 18 m.Preliminary results from the first three sampling periods revealed that the average densities of Dungeness crabs at the five locations ranged from 78 to 2012 crabs/ha. Crab densities differed between populations depending on sex, reproductive state of females and sampling period. Male crabs showed reduced densities at Gustavus Flats in April 1992 (P<0.01) and 1993 (P<0.001). Ovigerous females had greater density at Bartlett Cove in April 1993 (P<0.001). Sex ratios were frequently skewed toward females. At Bartlett Cove and Gustavus Flats females outnumbered males in April 1992 and 1993 (P<0.001). Most of the females at Bartlett Cove and Gustavus Flats in April 1992 and 1993 were ovigerous (P-0.001). Males tended to occupy greater depths than females in April 1992 (P<0.05) but not April 1993 (P-005). The mean depth of males shifted from deeper to shallower water between April and September 1992 (P<0.001). The depth distribution of ovigerous crabs did not differ from that of nonovigerous female crabs. Future research prior to the anticipated closure of the commercial Dungeness crab fishery in Glacier Bay will include a tagging study to determine the extent of crab movement and further study of the temporal as well as the spatial variability observed in the structure of these populations.

  8. The Interplay among Acorn Abundance and Rodent Behavior Drives the Spatial Pattern of Seedling Recruitment in Mature Mediterranean Oak Forests.

    PubMed

    Sunyer, Pau; Boixadera, Ester; Muñoz, Alberto; Bonal, Raúl; Espelta, Josep Maria

    2015-01-01

    The patterns of seedling recruitment in animal-dispersed plants result from the interactions among environmental and behavioral variables. However, we know little on the contribution and combined effect of both kinds of variables. We designed a field study to assess the interplay between environment (vegetation structure, seed abundance, rodent abundance) and behavior (seed dispersal and predation by rodents, and rooting by wild boars), and their contribution to the spatial patterns of seedling recruitment in a Mediterranean mixed-oak forest. In a spatially explicit design, we monitored intensively all environmental and behavioral variables in fixed points at a small spatial scale from autumn to spring, as well as seedling emergence and survival. Our results revealed that the spatial patterns of seedling emergence were strongly related to acorn availability on the ground, but not by a facilitation effect of vegetation cover. Rodents changed seed shadows generated by mother trees by dispersing most seeds from shrubby to open areas, but the spatial patterns of acorn dispersal/predation had no direct effect on recruitment. By contrast, rodents had a strong impact on recruitment as pilferers of cached seeds. Rooting by wild boars also reduced recruitment by reducing seed abundance, but also by changing rodent's behavior towards higher consumption of acorns in situ. Hence, seed abundance and the foraging behavior of scatter-hoarding rodents and wild boars are driving the spatial patterns of seedling recruitment in this mature oak forest, rather than vegetation features. The contribution of vegetation to seedling recruitment (e.g. facilitation by shrubs) may be context dependent, having a little role in closed forests, or being overridden by directed seed dispersal from shrubby to open areas. We warn about the need of using broad approaches that consider the combined action of environment and behavior to improve our knowledge on the dynamics of natural regeneration in

  9. The Interplay among Acorn Abundance and Rodent Behavior Drives the Spatial Pattern of Seedling Recruitment in Mature Mediterranean Oak Forests

    PubMed Central

    Boixadera, Ester; Bonal, Raúl

    2015-01-01

    The patterns of seedling recruitment in animal-dispersed plants result from the interactions among environmental and behavioral variables. However, we know little on the contribution and combined effect of both kinds of variables. We designed a field study to assess the interplay between environment (vegetation structure, seed abundance, rodent abundance) and behavior (seed dispersal and predation by rodents, and rooting by wild boars), and their contribution to the spatial patterns of seedling recruitment in a Mediterranean mixed-oak forest. In a spatially explicit design, we monitored intensively all environmental and behavioral variables in fixed points at a small spatial scale from autumn to spring, as well as seedling emergence and survival. Our results revealed that the spatial patterns of seedling emergence were strongly related to acorn availability on the ground, but not by a facilitationeffect of vegetation cover. Rodents changed seed shadows generated by mother trees by dispersing most seeds from shrubby to open areas, but the spatial patterns of acorn dispersal/predation had no direct effect on recruitment. By contrast, rodents had a strong impact on recruitment as pilferers of cached seeds. Rooting by wild boars also reduced recruitment by reducing seed abundance, but also by changing rodent’s behavior towards higher consumption of acorns in situ. Hence, seed abundance and the foraging behavior of scatter-hoarding rodents and wild boars are driving the spatial patterns of seedling recruitment in this mature oak forest, rather than vegetation features. The contribution of vegetation to seedling recruitment (e.g. facilitation by shrubs) may be context dependent, having a little role in closed forests, or being overridden by directed seed dispersal from shrubby to open areas. We warn about the need of using broad approaches that consider the combined action of environment and behavior to improve our knowledge on the dynamics of natural regeneration in

  10. Development of Spatial Distribution Patterns by Biofilm Cells

    PubMed Central

    Haagensen, Janus A. J.; Hansen, Susse K.; Christensen, Bjarke B.; Molin, Søren

    2015-01-01

    Confined spatial patterns of microbial distribution are prevalent in nature, such as in microbial mats, soil communities, and water stream biofilms. The symbiotic two-species consortium of Pseudomonas putida and Acinetobacter sp. strain C6, originally isolated from a creosote-polluted aquifer, has evolved a distinct spatial organization in the laboratory that is characterized by an increased fitness and productivity. In this consortium, P. putida is reliant on microcolonies formed by Acinetobacter sp. C6, to which it attaches. Here we describe the processes that lead to the microcolony pattern by Acinetobacter sp. C6. Ecological spatial pattern analyses revealed that the microcolonies were not entirely randomly distributed and instead were arranged in a uniform pattern. Detailed time-lapse confocal microscopy at the single-cell level demonstrated that the spatial pattern was the result of an intriguing self-organization: small multicellular clusters moved along the surface to fuse with one another to form microcolonies. This active distribution capability was dependent on environmental factors (carbon source and oxygen) and historical contingency (formation of phenotypic variants). The findings of this study are discussed in the context of species distribution patterns observed in macroecology, and we summarize observations about the processes involved in coadaptation between P. putida and Acinetobacter sp. C6. Our results contribute to an understanding of spatial species distribution patterns as they are observed in nature, as well as the ecology of engineered communities that have the potential for enhanced and sustainable bioprocessing capacity. PMID:26116674

  11. Spatial Genetic Structure of the Abundant and Widespread Peatmoss Sphagnum magellanicum Brid.

    PubMed Central

    Kyrkjeeide, Magni Olsen; Hassel, Kristian; Flatberg, Kjell Ivar; Shaw, A. Jonathan; Yousefi, Narjes; Stenøien, Hans K.

    2016-01-01

    Spore-producing organisms have small dispersal units enabling them to become widespread across continents. However, barriers to gene flow and cryptic speciation may exist. The common, haploid peatmoss Sphagnum magellanicum occurs in both the Northern and Southern hemisphere, and is commonly used as a model in studies of peatland ecology and peatmoss physiology. Even though it will likely act as a rich source in functional genomics studies in years to come, surprisingly little is known about levels of genetic variability and structuring in this species. Here, we assess for the first time how genetic variation in S. magellanicum is spatially structured across its full distribution range (Northern Hemisphere and South America). The morphologically similar species S. alaskense was included for comparison. In total, 195 plants were genotyped at 15 microsatellite loci. Sequences from two plastid loci (trnG and trnL) were obtained from 30 samples. Our results show that S. alaskense and almost all plants of S. magellanicum in the northern Pacific area are diploids and share the same gene pool. Haploid plants occur in South America, Europe, eastern North America, western North America, and southern Asia, and five genetically differentiated groups with different distribution ranges were found. Our results indicate that S. magellanicum consists of several distinct genetic groups, seemingly with little or no gene flow among them. Noteworthy, the geographical separation of diploids and haploids is strikingly similar to patterns found within other haploid Sphagnum species spanning the Northern Hemisphere. Our results confirm a genetic division between the Beringian and the Atlantic that seems to be a general pattern in Sphagnum taxa. The pattern of strong genetic population structuring throughout the distribution range of morphologically similar plants need to be considered in future functional genomic studies of S. magellanicum. PMID:26859563

  12. Abundance and size distribution of sublittoral meiobenthos along estuarine salinity gradients

    NASA Astrophysics Data System (ADS)

    Yamamuro, Masumi

    2000-10-01

    Abundance and size distribution of the sublittoral meiobenthos in the upper 3 cm of the sediment were surveyed in the eutrophic, estuarine lagoons, Lakes Nakaumi and Shinji, Japan. Samples were taken in late spring from 10 stations located along salinity gradients. The density of meiobenthos was at a minimum in the intermediate salinity zone. Nematodes in L. Shinji were significantly larger in size than in L. Nakaumi, due to the size reduction of marine species in the latter. The biomass of co-existing bivalves, which would contribute more food supply to the meiobenthic fauna, did not affect the abundance and size of meiobenthos. It was suggested that the salinity gradient was the most influential factor on the abundance and size structure of meiobenthos in estuarine lagoons where salinity is fairly constant.

  13. Microplastic abundance, distribution and composition along a latitudinal gradient in the Atlantic Ocean.

    PubMed

    Kanhai, La Daana K; Officer, Rick; Lyashevska, Olga; Thompson, Richard C; O'Connor, Ian

    2017-02-15

    Microplastics in the world's oceans are a global concern due to the potential threat they pose to marine organisms. This study investigated microplastic abundance, distribution and composition in the Atlantic Ocean on a transect from the Bay of Biscay to Cape Town, South Africa. Microplastics were sampled from sub-surface waters using the underway system of the RV Polarstern. Potential microplastics were isolated from samples and FT-IR spectroscopy was used to identify polymer types. Of the particles analysed, 63% were rayon and 37% were synthetic polymers. The majority of microplastics were identified as polyesters (49%) and blends of polyamide or acrylic/polyester (43%). Overall, fibres (94%) were predominant. Average microplastic abundance in the Atlantic Ocean was 1.15±1.45particlesm(-3). Of the 76 samples, 14 were from the Benguela upwelling and there was no statistically significant difference in microplastic abundance between upwelled and non-upwelled sites.

  14. Understanding the Nature of Stellar Chemical Abundance Distributions in Nearby Stellar Systems

    NASA Astrophysics Data System (ADS)

    Lee, Duane Morris

    Since stars retain signatures of their galactic origins in their chemical compositions, we can exploit the chemical abundance distributions that we observe in stellar systems to put constraints on the nature of their progenitors. In this thesis, I present results from three projects aimed at understanding how high resolution spectroscopic observations of nearby stellar systems might be interpreted. The first project presents one possible explanation for the origin of peculiar abundance distributions observed in ultra-faint dwarf satellites of the Milky Way. The second project explores to what extent the distribution of chemical elements in the stellar halo can be used to trace Galactic accretion history from the birth of the Galaxy to the present day. Finally, a third project focuses on developing an input optimization algorithm for the second project to produce better estimates of halo accretion histories. In conclusion, I propose some other new ways to use statistical models and techniques along with chemical abundance distribution data to uncover galactic histories.

  15. Abundance, distribution, and diversity of viruses in alkaline, hypersaline Mono Lake, California.

    PubMed

    Jiang, S; Steward, G; Jellison, R; Chu, W; Choi, S

    2004-01-01

    Mono Lake is a large (180 km2), alkaline (pH approximately 10), moderately hypersaline (70-85 g kg(-1)) lake lying at the western edge of the Great Basin. An episode of persistent chemical stratification (meromixis) was initiated in 1995 and has resulted in depletion of oxygen and accumulation of ammonia and sulfide beneath the chemocline. Although previous studies have documented high bacterial abundances and marked seasonal changes in phytoplankton abundance and community composition, there have been no previous reports on the occurrence of viruses in this unique lake. Based on the high concentrations and diversity of microbial life in this lake, we hypothesized that planktonic viruses are also abundant and diverse. To examine the abundance and distribution of viruses and bacteria, water samples were collected from four stations along 5 to 15 vertical depths at each station. Viral abundance ranged from 1 x 10(8) to 1 x 10(9) mL(-1), among the highest observed in any natural aquatic system examined so far. Increases (p < 0.1) in viral densities were observed in the anoxic bottom water at multiple stations. However, regression analysis indicated that viral abundance could not be predicted by any single environmental parameter. Pulsed field gel electrophoresis revealed a diverse viral community in Mono Lake with genome sizes ranging from approximately 14 to >400 kb with most of the DNA in the 30 to 60 kb size range. Cluster analysis grouped the anoxic bottom-water viral community into a unique cluster differentiating it from surface and mid-water viral communities. A hybridization study using an indigenous viral isolate as a probe revealed an episodic pattern of temporal phage distribution with strong niche stratification between oxic and anoxic waters.

  16. Dispersal leads to spatial autocorrelation in species distributions: A simulation model

    USGS Publications Warehouse

    Bahn, V.; Krohn, W.B.; O'Connor, R.J.

    2008-01-01

    Compared to population growth regulated by local conditions, dispersal has been underappreciated as a central process shaping the spatial distribution of populations. This paper asks: (a) which conditions increase the importance of dispersers relative to local recruits in determining population sizes? and (b) how does dispersal influence the spatial distribution patterns of abundances among connected populations? We approached these questions with a simulation model of populations on a coupled lattice with cells of continuously varying habitat quality expressed as carrying capacities. Each cell contained a population with the basic dynamics of density-regulated growth, and was connected to other populations by immigration and emigration. The degree to which dispersal influenced the distribution of population sizes depended most strongly on the absolute amount of dispersal, and then on the potential population growth rate. Dispersal decaying in intensity with distance left close neighbours more alike in population size than distant populations, leading to an increase in spatial autocorrelation. The spatial distribution of species with low potential growth rates is more dependent on dispersal than that of species with high growth rates; therefore, distribution modelling for species with low growth rates requires particular attention to autocorrelation, and conservation management of these species requires attention to factors curtailing dispersal, such as fragmentation and dispersal barriers. ?? 2007 Elsevier B.V. All rights reserved.

  17. Distribution and abundance of Larvaceans in the Southern Ocean between 30 and 80°E

    NASA Astrophysics Data System (ADS)

    Lindsay, M. C. M.; Williams, G. D.

    2010-05-01

    Larvaceans are gelatinous zooplankton that inhabit most oceans, coastal waters and estuaries, and are thought to be important grazers of the ocean's primary production. To date there is little known about larvaceans in the Southern Ocean and their ecological role. This paper details a Larvacean survey conducted during the BROKE-West voyage (Jan-Mar 2006) to the southwest Indian Ocean sector of the East Antarctic margin between 30 and 80°E and 60 and 70°S. Larvacean abundances were quantified from three sampling devices: a ring net with 150-μm mesh and cross-sectional area of 0.8 m 2; a Rectangular Mid-Water Trawl (RMT1) with 300-μm mesh and a nominal cross-sectional area of 1 m 2; and a Continuous Plankton Recorder (CPR) with a 270-μm mesh and a 1.6-cm 2 cross-sectional area. The samples collected from the ring net were identified to the species level using stereo dissecting microscopes and scanning electron microscopy (SEM). The survey revealed two species: Oikopleura gaussica and Fritillaria drygalski. The abundance of both species increased from <1 ind. m -3 to 5.8 ind. m -3 as the survey progressed from west to east and decreased from 5.8 ind. m -3 in the north to 2 ind. m -3 in the south until the shelf region and marginal sea-ice zone where abundances increased to 4 ind. m -3. Statistically significant relationships were identified between abundance and latitude in samples from the RMT1 and Ring net. There was also a relationship between the larvacean abundance from the RMT1 and longitude. Although larvacean distribution and abundance patterns appeared to agree with the large-scale oceanographic boundaries of the survey area, there were no statistically significant relationships between larvacean abundance and any physical oceanography parameters.

  18. Temporal, spatial and tidal influences on benthic and demersal fish abundance in the Forth estuary

    NASA Astrophysics Data System (ADS)

    Greenwood, M. F. D.; Hill, A. S.

    2003-10-01

    The 10 most common demersal and benthic fish species collected during a 1982-2001 Agassiz trawling programme in the mid/lower Forth estuary, east Scotland, were assessed for possible influences of trawl site, month of sampling and tide height on abundance. All species were seasonal in their occurrence in the study area, with trends generally similar to those shown in other temperate European estuaries. Six species (whiting ( Merlangius merlangus), dab ( Limanda limanda), pogge ( Agonus cataphractus), fatherlasher ( Myoxocephalus scorpius), 'gobies' ( Pomatoschistus spp.) and sea snail ( Liparis liparis)) exhibited high winter and low summer abundance while plaice ( Pleuronectes platessa), flounder ( Platichthys flesus) and eelpout ( Zoarces viviparous) were least numerous in winter and mostly present in summer. Cod ( Gadus morhua) were low in abundance in late spring, but did not show pronounced peaks of abundance. Trawl station significantly influenced fish abundance in all but one case ('gobies'). There was relatively low abundance of most species at the middle trawl location, Tancred; only plaice, dab and whiting were numerous at this site. The majority of species were abundant at Port Edgar, adjacent to the estuary mouth, which may have reflected the relatively stable salinity conditions at this station. Flounder was most abundant at the mid-estuarine site of Longannet, and this was likely to have been in order to feed on the large mudflats nearby. Dispersal of fish onto inundated intertidal areas is suggested as a possible mechanism explaining the significant decrease in abundance of several species (flounder, pogge, eelpout and 'gobies') at high water (HW). The significant increase in abundance of whiting in the study area at HW may have been attributable to immigration of individuals from inshore regions of the Firth of Forth by the action of the flood tide. Interactions of location, month and tide height significantly influenced abundance of most species

  19. Abundance and distribution of feral pigs at Hakalau Forest National Wildlife Refuge, 2010-2013

    USGS Publications Warehouse

    Hess, Steven C.; Leopold, Christina R.; Kendall, Steven J.

    2013-01-01

    The Hakalau Forest Unit of the Big Island National Wildlife Refuge Complex has intensively managed feral pigs (Sus scrofa) and monitored feral pig presence with surveys of all managed areas since 1988. Results of all available data regarding pig management activities through 2004 were compiled and analyzed, but no further analyses had been conducted since then. The objective of this report was to analyze recent feral ungulate surveys at the Hakalau Forest Unit to determine current pig abundance and distribution. Activity indices for feral pigs, consisting of the presence of fresh or intermediate sign at 422 stations, each with approximately 20 sample plots, were compiled for years 2010–2013. A calibrated model based on the number of pigs removed from one management unit and concurrent activity surveys was applied to estimate pig abundance in other management units. Although point estimates appeared to decrease from 489.1 (±105.6) in 2010 to 407.6 (±88.0) in 2013, 95% confidence intervals overlapped, indicating no significant change in pig abundance within all management units. Nonetheless, there were significant declines in pig abundance over the four-year period within management units 1, 6, and 7. Areas where pig abundance remained high include the southern portion of Unit 2. Results of these surveys will be useful for directing management actions towards specific management units.

  20. [Diversity, abundance and distribution of benthic macrofauna on rocky shores from North Sucre State, Venezuela].

    PubMed

    Fernandez, Johanna; Jiménez, Mayré; Allen, Thays

    2014-09-01

    The rocky intertidal zone is among the most extreme physical environments on Earth. Organisms living in this area are constantly stricken by physico-chemical and biological factors. Due to the ecological importance of these areas, we studied the diversity, abundance and distribution of the rocky coastline benthic macrofauna, from the North coast of Sucre State, Venezuela. We performed bimonthly samplings from November 2008 to September 2009. The collection of biological material in the littoral zone (supra, mid and infralittoral) was done manually with a grid of 0.25m2. Organisms were preserved in 10% formalin for later identification and analysis (ecological parameters and Kruskal-Wallis test to the abundance and diversity). We found a total 19,020 organisms (86 spp.), in 8 phyla, 45 families and 47 genera. Mollusks were the most abundant and diverse (58 spp.), followed by arthropods (12 spp.), annelids (7 spp.), echinoderms (5 spp.), and the less represented cnidarians, sipunculids, nemertinids and urochordates (1 sp.). The zonation found coincided with the universal scheme of zonation. The towns of Rio Boca and Rio Caribe presented the highest values of ecological parameters, and the lowest were found in Playa Grande. Statistical significant differences were found in the abundance and diversity of macrofauna among the three zones. The little information on the composition and distribution of macrobenthic rocky coastline, prevents a better comparison, however the results contribute to the knowledge of the marine biodiversity in this region.

  1. Distribution, abundance, and resting microhabitat of burbot on Julian's Reef, southwestern Lake Michigan

    USGS Publications Warehouse

    Edsall, Thomas A.; Kennedy, Gregory W.; Horns, William H.

    1993-01-01

    We used a remotely operated submersible vehicle equipped with a color video camera to videotape the lake bed and document the distribution and abundance of burbot Lota lota on a 156-hectare portion of Julian's Reef in southwestern Lake Michigan. The substrates and bathymetry of the study area had been mapped recently by side-scan sonar. Burbot density determined from videotapes covering 6,900 m2 of lake bed at depths of 23-41 m averaged 139 individuals/ hectare (range, 0-571/hectare). This density was substantially higher than the highest burbot density (59-95/hectare) reported in the literature. Burbot were present on the lake bed at depths of 23-36 m, but were most abundant near the crest of the reef at 23-28 m, where the water temperature was 8-13°C, their preferred summer temperature range. Substrates in that temperature range on the reef were bedrock, bedrock ridges, and bedrock and rubble. Burbot were most abundant on the bedrock and rubble. Small fish and macroinvertebrates typically eaten by burbot elsewhere in western Lake Michigan were distributed on the reef according to their summer preferred temperatures and were not seen in abundance where burbot density was highest. We saw no lake trout Salvelinus namaycush on Julian's Reef, although large numbers of juvenile lake trout have been stocked there annually and temperatures on the reef were in the preferred summer temperature range for lake trout.

  2. Distribution, abundance, and resting microhabitat of burbot on Julian's Reef, southwestern Lake Michigan

    USGS Publications Warehouse

    Edsall, Thomas A.; Kennedy, Gregory W.; Horns, William H.

    1993-01-01

    We used a remotely operated submersible vehicle equipped with a color video camera to videotape the lake bed and document the distribution and abundance of burbot Lota lotaon a 156-hectare portion of Julian's Reef in southwestern Lake Michigan. The substrates and bathymetry of the study area had been mapped recently by side-scan sonar. Burbot density determined from videotapes covering 6,900 m2 of lake bed at depths of 23–41 m averaged 139 individuals/ hectare (range, 0–571/hectare). This density was substantially higher than the highest burbot density (59–95/hectare) reported in the literature. Burbot were present on the lake bed at depths of 23–36 m, but were most abundant near the crest of the reef at 23–28 m, where the water temperature was 8–13°C, their preferred summer temperature range. Substrates in that temperature range on the reef were bedrock, bedrock ridges, and bedrock and rubble. Burbot were most abundant on the bedrock and rubble. Small fish and macroinvertebrates typically eaten by burbot elsewhere in western Lake Michigan were distributed on the reef according to their summer preferred temperatures and were not seen in abundance where burbot density was highest. We saw no lake trout Salvelinus namaycush on Julian's Reef, although large numbers of juvenile lake trout have been stocked there annually and temperatures on the reef were in the preferred summer temperature range for lake trout.

  3. [Temporal and spatial distribution of shorebirds (Charadriiformes) at San Ignacio Lagoon, Baja California Sur, Mexico].

    PubMed

    Mendoza, Luis Francisco; Carmona, Roberto

    2013-03-01

    Baja California Peninsula has several wetlands that represent important ecosystems for shorebirds. San Ignacio Lagoon is one of these sites, and supports 10% of the total abundance of shorebirds reported in this Peninsula. Since there is few information about this group in this area, we studied spatial and temporal changes in abundance and distribution of shorebirds in San Ignacio Lagoon. For this, we conducted twelve monthly censuses (October 2007-September 2008) on the entire internal perimeter of the lagoon, which we divided into four areas: two at the North and two at the South. We observed a seasonal pattern, with the lowest abundance in May (1 585 birds) and the highest in October (47 410). The most abundant species were Marbled Godwits (Limosa fedoa; 55% of the total records), Western Sandpipers (Calidris mauri; 23%), and Willet (Tringa semipalmata; 10%). All three species were more abundant in autumn; for both, the Marbled Godwit and Willet, we observed their highest numbers in winter and spring, while the Western Sandpiper showed noticeable oscillations, reaching a maximum in early winter (December). In summer, Marbled Godwit and Willet were the only birds present but in lower numbers. Here present the first records of the Pacific Red Knot (Calidris canutus roselaari) in the area. Bird abundance and species richness were influenced seasonally by migration and spatially by sites in the lagoon. The greatest shorebird abundance was in the South area of the lagoon, probably because of better accessibility to food. Our results allowed the inclusion of San Ignacio Lagoon in the Western Hemisphere Shorebirds Reserve Network (WHSRN) as a site of international importance.

  4. Estimating and Modeling Gene Flow for a Spatially Distributed Species

    DTIC Science & Technology

    1991-01-01

    AD-A238 221/I1 Estimating and modeling gene flow for a spatially distributed species JUL1 7 1961T. Burr 1 and T. V. Kurien 2 Department of Statistics...modeling gene flow for a spatially distributed species. By T. Burr and T. V. Kurien Departmeii Of Statistics Florida State University Abstract This...chromosome (referred to as a locus) is a meaningful string of several hundred symbols called a gene . Typ- ically there are many loci on a chromosome. The

  5. Estimating the abundance of clustered animal population by using adaptive cluster sampling and negative binomial distribution

    NASA Astrophysics Data System (ADS)

    Bo, Yizhou; Shifa, Naima

    2013-09-01

    An estimator for finding the abundance of a rare, clustered and mobile population has been introduced. This model is based on adaptive cluster sampling (ACS) to identify the location of the population and negative binomial distribution to estimate the total in each site. To identify the location of the population we consider both sampling with replacement (WR) and sampling without replacement (WOR). Some mathematical properties of the model are also developed.

  6. Juvenile Salmonid and Baitfish Distribution, Abundance and Prey Resources in Selected Areas of Grays Harbor, Washington

    DTIC Science & Technology

    1981-09-01

    size. 14i 188 The density-size distributions of the two species in freshwater also affect the degree of interspecific competition and pressure for...that physiological changes associated with smoltification, changes in population abundance or avail- = ability of food resources, or interspecific ... competition could have 52 depressed growth, but he was unable to offer direct evidence to support or refute any of these alternative hypotheses

  7. Predicting the offshore distribution and abundance of marine birds with a hierarchical community distance sampling model.

    PubMed

    Goyert, Holly F; Gardner, Beth; Sollmann, Rahel; Veit, Richard R; Gilbert, Andrew T; Connelly, Emily E; Williams, Kathryn A

    2016-09-01

    Proposed offshore wind energy development on the Atlantic Outer Continental Shelf has brought attention to the need for baseline studies of the distribution and abundance of marine birds. We compiled line transect data from 15 shipboard surveys (June 2012-April 2014), along with associated remotely sensed habitat data, in the lower Mid-Atlantic Bight off the coast of Delaware, Maryland, and Virginia, USA. We implemented a recently developed hierarchical community distance sampling model to estimate the seasonal abundance of 40 observed marine bird species. Treating each season separately, we included six oceanographic parameters to estimate seabird abundance: three static (distance to shore, slope, sediment grain size) and three dynamic covariates (sea surface temperature [SST], salinity, primary productivity). We expected that avian bottom-feeders would respond primarily to static covariates that characterize seafloor variability, and that surface-feeders would respond more to dynamic covariates that quantify surface productivity. We compared the variation in species-specific and community-level responses to these habitat features, including for rare species, and we predicted species abundance across the study area. While several protected species used the study area in summer during their breeding season, estimated abundance and observed diversity were highest for nonbreeding species in winter. Distance to shore was the most common significant predictor of abundance, and thus useful in estimating the potential exposure of marine birds to offshore development. In many cases, our expectations based on feeding ecology were confirmed, such as in the first winter season, when bottom-feeders associated significantly with the three static covariates (distance to shore, slope, and sediment grain size), and surface-feeders associated significantly with two dynamic covariates (SST, primary productivity). However, other cases revealed significant relationships between

  8. Distribution of known macrozooplankton abundance and biomass in the global ocean

    NASA Astrophysics Data System (ADS)

    Moriarty, R.; Buitenhuis, E. T.; Le Quéré, C.; Gosselin, M.-P.

    2013-07-01

    Macrozooplankton are an important link between higher and lower trophic levels in the oceans. They serve as the primary food for fish, reptiles, birds and mammals in some regions, and play a role in the export of carbon from the surface to the intermediate and deep ocean. Little, however, is known of their global distribution and biomass. Here we compiled a dataset of macrozooplankton abundance and biomass observations for the global ocean from a collection of four datasets. We harmonise the data to common units, calculate additional carbon biomass where possible, and bin the dataset in a global 1 × 1 degree grid. This dataset is part of a wider effort to provide a global picture of carbon biomass data for key plankton functional types, in particular to support the development of marine ecosystem models. Over 387 700 abundance data and 1330 carbon biomass data have been collected from pre-existing datasets. A further 34 938 abundance data were converted to carbon biomass data using species-specific length frequencies or using species-specific abundance to carbon biomass data. Depth-integrated values are used to calculate known epipelagic macrozooplankton biomass concentrations and global biomass. Global macrozooplankton biomass, to a depth of 350 m, has a mean of 8.4 μg C L-1, median of 0.2 μg C L-1 and a standard deviation of 63.5 μg C L-1. The global annual average estimate of macrozooplankton biomass in the top 350 m, based on the median value, is 0.02 Pg C. There are, however, limitations on the dataset; abundance observations have good coverage except in the South Pacific mid-latitudes, but biomass observation coverage is only good at high latitudes. Biomass is restricted to data that is originally given in carbon or to data that can be converted from abundance to carbon. Carbon conversions from abundance are restricted by the lack of information on the size of the organism and/or the absence of taxonomic information. Distribution patterns of global

  9. Spatial and temporal predictions of moose winter distribution.

    PubMed

    Månsson, J; Bunnefeld, N; Andrén, H; Ericsson, G

    2012-10-01

    Herbivores are usually distributed unevenly across the landscape often because of variation in resource availability. We used zero-inflated generalised additive models (to account for data with a high number of zeros) that include georeferences to predict winter distribution of a large herbivore (moose Alces alces). Moose distribution was analysed in relation to forage availability and distance to neighbouring sites. Our results showed that the ability to explain moose distribution indexed by pellet count data at a local scale increased when spatial information (longitude and latitude) was added to the model compared to the model only including food availability. By using the relationship between moose and forage distribution, and the spatial information, we predicted patch choice by moose reasonably well in 2 out of 4 years. However, the distribution of moose was also influenced by weather conditions, as it was most clumped in the year with most snow. In conclusion, our study lends support for a non-linear approach using georeferences for a comprehensive understanding of herbivore distribution at a small scale. This result also indicates that the use of a certain patch by moose not only depends on the selected patch itself but is also influenced by the neighbouring patch and factors at a larger spatial scale, such as moose management influencing the density above moose home range level. The relatively high proportion of unexplained variation suggests that the use of a certain patch is also influenced by other factors such as topography, predation, competition, weather conditions, and wildlife management strategies.

  10. Changes in the distribution and abundance of albatrosses in the eastern Bering Sea: 1975-2010

    NASA Astrophysics Data System (ADS)

    Kuletz, Kathy J.; Renner, Martin; Labunski, Elizabeth A.; Hunt, George L.

    2014-11-01

    A number of marine species are showing poleward shifts in their distributions in response to climate warming. Three albatross species frequent the Bering Sea, the Laysan (Phoebastria immutabilis), the black-footed (Phoebastria nigripes), and the endangered short-tailed albatross (Phoebastria albatrus). To determine if albatrosses changed their distribution or abundance in the eastern Bering Sea between 1975 and 2010, we examined at-sea survey data using the North Pacific Pelagic Seabird Database. Within our study area, all three species of albatross occurred most frequently in the waters of the Aleutian Islands. In the eastern Bering Sea, all three species were most abundant near the shelf break, and in particular in the vicinity of the major submarine canyons in the shelf slope. Starting in the 1990s, population densities increased for all three albatross species, with a marked increase in the 2000s. In the 2000s, there was also an increase in the frequency at which albatrosses were recorded in the central and northern Bering Sea. Both black-footed and short-tailed albatrosses shifted the centers of their Bering Sea distributions northward. The Laysan albatross center of distribution shifted southward due to increased numbers along the southern shelf break, but densities also increased northward. We suggest that the observed changes in distribution and abundance of the three albatross species in the eastern Bering Sea may have been responses to an increase in the availability of squid, their primary prey, there. Additionally, the expansion of the distribution of the short-tailed albatross in the eastern Bering Sea may represent the reclamation of its previous range, now that the population is beginning to recover from near extinction caused by over harvesting. We suggest that predicted increases in ocean temperatures and northward movement of prey could result in albatrosses and other marine apex predators foraging farther north along the Bering Sea shelf and

  11. Distribution and abundance of fishes and invertebrates in Gulf of Mexico estuaries. Volume 1. Data summaries. Final report, 1985-1991

    SciTech Connect

    Nelson, D.M.; Monaco, M.E.; Williams, C.D.; Czapla, T.E.; Pattillo, M.E.

    1992-09-01

    The report presents information on the spatial and temporal distribution, and relative abundance of 44 fish and invertebrate species in 31 estuaries along the Gulf of Mexico coast of Florida, Alabama, Mississippi, Louisiana, and Texas. Its purpose is to disseminate data developed in the National Oceanic and Atmospheric Administration's (NOAA) Estuarine Living Marine Resources (ELMR) Program. The presence, distribution, and relative abundance of each species and the time period it uses each estuary are the primary data compiled. The report combines information presented in earlier reports for nine estuaries in Texas, 13 estuaries in Florida and Alabama, and nine estuaries in Louisiana and Mississippi. However, several species have been added, and the graphic depiction of relative abundance has been improved.

  12. Distribution and abundance of western gray whales during a seismic survey near Sakhalin Island, Russia.

    PubMed

    Yazvenko, S B; McDonald, T L; Blokhin, S A; Johnson, S R; Meier, S K; Melton, H R; Newcomer, M W; Nielson, R M; Vladimirov, V L; Wainwright, P W

    2007-11-01

    Exxon Neftegas Limited, operator of the Sakhalin-1 consortium, is developing oil and gas reserves on the continental shelf off northeast Sakhalin Island, Russia. DalMorNefteGeofizika (DMNG), on behalf of the Sakhalin-1 consortium, conducted a 3-D seismic survey of the Odoptu license area during 17 August-9 September 2001. A portion of the primary known feeding area of the endangered western gray whale (Eschrichtius robustus) is located adjacent to the seismic block. The data presented here were collected as part of daily monitoring to determine if there was any measurable effect of the seismic survey on the distribution and abundance of western gray whales. Mitigation and monitoring program included aerial surveys conducted between 19 July and 19 November using the methodology outlined by the Southern California High Energy Seismic Survey team (HESS). These surveys provided documentation of the distribution, abundance and bottom feeding activity of western gray whales in relation to seismic survey sounds. From an operations perspective, the aerial surveys provided near real-time data on the location of whales in and outside the feeding area, and documented whether whales were displaced out of an area normally used as feeding habitat. The objectives of this study were to assess (a) temporal changes in the distribution and abundance of gray whales in relation to seismic survey, and (b) the influence of seismic survey, environmental factors, and other variables on the distribution and abundance of gray whales within their preferred feeding area adjacent to Piltun Bay. Multiple regression analysis revealed a limited redistribution of gray whales southward within the Piltun feeding area when the seismic survey was fully operational. A total of five environmental and other variables unrelated to seismic survey (date and proxies of depth, sea state and visibility) and one seismic survey-related variable (seg3d, i.e., received sound energy accumulated over 3 days) had

  13. Abundance and Distribution Characteristics of Microplastics in Surface Seawaters of the Incheon/Kyeonggi Coastal Region.

    PubMed

    Chae, Doo-Hyeon; Kim, In-Sung; Kim, Seung-Kyu; Song, Young Kyoung; Shim, Won Joon

    2015-10-01

    Microplastics in marine environments are of emerging concern due to their widespread distribution, their ingestion by various marine organisms, and their roles as a source and transfer vector of toxic chemicals. However, our understanding of their abundance and distribution characteristics in surface seawater (SSW) remains limited. We investigated microplastics in the surface microlayer (SML) and the SSW at 12 stations near-shore and offshore of the Korean west coast, Incheon/Kyeonggi region. Variation between stations, sampling media, and sampling methods were compared based on abundances, size distribution, and composition profiles of microsized synthetic polymer particles. The abundance of microplastics was greater in the SML (152,688 ± 92,384 particles/m(3)) than in SSW and showed a significant difference based on the sampling method for SSWs collected using a hand net (1602 ± 1274 particles/m(3)) and a zooplankton trawl net (0.19 ± 0.14 particles/m(3)). Ship paint particles (mostly alkyd resin polymer) accounted for the majority of microplastics detected in both SML and SSWs, and increased levels were observed around the voyage routes of large vessels. This indicates that polymers with marine-based origins become an important contributor to microplastics in coastal SSWs of this coastal region.

  14. Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes

    SciTech Connect

    Aziz, Ramy K.; Dwivedi, Bhakti; Akhter, Sajia; Breitbart, Mya; Edwards, Robert A.

    2015-05-08

    Phages are the most abundant biological entities on Earth and play major ecological roles, yet the current sequenced phage genomes do not adequately represent their diversity, and little is known about the abundance and distribution of these sequenced genomes in nature. Although the study of phage ecology has benefited tremendously from the emergence of metagenomic sequencing, a systematic survey of phage genes and genomes in various ecosystems is still lacking, and fundamental questions about phage biology, lifestyle, and ecology remain unanswered. To address these questions and improve comparative analysis of phages in different metagenomes, we screened a core set of publicly available metagenomic samples for sequences related to completely sequenced phages using the web tool, Phage Eco-Locator. We then adopted and deployed an array of mathematical and statistical metrics for a multidimensional estimation of the abundance and distribution of phage genes and genomes in various ecosystems. Experiments using those metrics individually showed their usefulness in emphasizing the pervasive, yet uneven, distribution of known phage sequences in environmental metagenomes. Using these metrics in combination allowed us to resolve phage genomes into clusters that correlated with their genotypes and taxonomic classes as well as their ecological properties. By adding this set of metrics to current metaviromic analysis pipelines, where they can provide insight regarding phage mosaicism, habitat specificity, and evolution.

  15. Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes

    DOE PAGES

    Aziz, Ramy K.; Dwivedi, Bhakti; Akhter, Sajia; ...

    2015-05-08

    Phages are the most abundant biological entities on Earth and play major ecological roles, yet the current sequenced phage genomes do not adequately represent their diversity, and little is known about the abundance and distribution of these sequenced genomes in nature. Although the study of phage ecology has benefited tremendously from the emergence of metagenomic sequencing, a systematic survey of phage genes and genomes in various ecosystems is still lacking, and fundamental questions about phage biology, lifestyle, and ecology remain unanswered. To address these questions and improve comparative analysis of phages in different metagenomes, we screened a core set ofmore » publicly available metagenomic samples for sequences related to completely sequenced phages using the web tool, Phage Eco-Locator. We then adopted and deployed an array of mathematical and statistical metrics for a multidimensional estimation of the abundance and distribution of phage genes and genomes in various ecosystems. Experiments using those metrics individually showed their usefulness in emphasizing the pervasive, yet uneven, distribution of known phage sequences in environmental metagenomes. Using these metrics in combination allowed us to resolve phage genomes into clusters that correlated with their genotypes and taxonomic classes as well as their ecological properties. By adding this set of metrics to current metaviromic analysis pipelines, where they can provide insight regarding phage mosaicism, habitat specificity, and evolution.« less

  16. Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes.

    PubMed

    Aziz, Ramy K; Dwivedi, Bhakti; Akhter, Sajia; Breitbart, Mya; Edwards, Robert A

    2015-01-01

    Phages are the most abundant biological entities on Earth and play major ecological roles, yet the current sequenced phage genomes do not adequately represent their diversity, and little is known about the abundance and distribution of these sequenced genomes in nature. Although the study of phage ecology has benefited tremendously from the emergence of metagenomic sequencing, a systematic survey of phage genes and genomes in various ecosystems is still lacking, and fundamental questions about phage biology, lifestyle, and ecology remain unanswered. To address these questions and improve comparative analysis of phages in different metagenomes, we screened a core set of publicly available metagenomic samples for sequences related to completely sequenced phages using the web tool, Phage Eco-Locator. We then adopted and deployed an array of mathematical and statistical metrics for a multidimensional estimation of the abundance and distribution of phage genes and genomes in various ecosystems. Experiments using those metrics individually showed their usefulness in emphasizing the pervasive, yet uneven, distribution of known phage sequences in environmental metagenomes. Using these metrics in combination allowed us to resolve phage genomes into clusters that correlated with their genotypes and taxonomic classes as well as their ecological properties. We propose adding this set of metrics to current metaviromic analysis pipelines, where they can provide insight regarding phage mosaicism, habitat specificity, and evolution.

  17. Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes

    PubMed Central

    Aziz, Ramy K.; Dwivedi, Bhakti; Akhter, Sajia; Breitbart, Mya; Edwards, Robert A.

    2015-01-01

    Phages are the most abundant biological entities on Earth and play major ecological roles, yet the current sequenced phage genomes do not adequately represent their diversity, and little is known about the abundance and distribution of these sequenced genomes in nature. Although the study of phage ecology has benefited tremendously from the emergence of metagenomic sequencing, a systematic survey of phage genes and genomes in various ecosystems is still lacking, and fundamental questions about phage biology, lifestyle, and ecology remain unanswered. To address these questions and improve comparative analysis of phages in different metagenomes, we screened a core set of publicly available metagenomic samples for sequences related to completely sequenced phages using the web tool, Phage Eco-Locator. We then adopted and deployed an array of mathematical and statistical metrics for a multidimensional estimation of the abundance and distribution of phage genes and genomes in various ecosystems. Experiments using those metrics individually showed their usefulness in emphasizing the pervasive, yet uneven, distribution of known phage sequences in environmental metagenomes. Using these metrics in combination allowed us to resolve phage genomes into clusters that correlated with their genotypes and taxonomic classes as well as their ecological properties. We propose adding this set of metrics to current metaviromic analysis pipelines, where they can provide insight regarding phage mosaicism, habitat specificity, and evolution. PMID:26005436

  18. Abundance and distribution of immature mosquitoes in urban rivers proximate to their larval habitats.

    PubMed

    Ma, Minghai; Huang, Minsheng; Leng, Peien

    2016-11-01

    Whether ecological restoration of polluted urban rivers would provide suitable breeding habitats for some mosquitoes was not clear yet. It was therefore important to determine how altered river conditions influence mosquito ecology. Monthly data on water quality and larval density were obtained to determine the effects of river systems on the distribution and abundance of immature mosquitoes in two coastal cities in Eastern China. In total, 5 species within two genera of mosquitoes were collected and identified in habitat with vegetation from three positive rivers. Culex pipiens pallens was the most abundant and widely distributed species. A new species (Culex fuscanus) was reported in certain districts. Physico-chemical parameters of river water were important, but not the only, set of influences on immature mosquito breeding. Aquatic vegetation could increase the likelihood of mosquito breeding while artificial aeration might prevent the approach of mosquitoes. Slow-moving water might be a new potential marginal habitat type for some Culex and Aedes albopictus. Variation of river system with ecological restoration might influence the abundance and distribution of immature mosquitoes.

  19. Unleashing spatially distributed ecohydrology modeling using Big Data tools

    NASA Astrophysics Data System (ADS)

    Miles, B.; Idaszak, R.

    2015-12-01

    Physically based spatially distributed ecohydrology models are useful for answering science and management questions related to the hydrology and biogeochemistry of prairie, savanna, forested, as well as urbanized ecosystems. However, these models can produce hundreds of gigabytes of spatial output for a single model run over decadal time scales when run at regional spatial scales and moderate spatial resolutions (~100-km2+ at 30-m spatial resolution) or when run for small watersheds at high spatial resolutions (~1-km2 at 3-m spatial resolution). Numerical data formats such as HDF5 can store arbitrarily large datasets. However even in HPC environments, there are practical limits on the size of single files that can be stored and reliably backed up. Even when such large datasets can be stored, querying and analyzing these data can suffer from poor performance due to memory limitations and I/O bottlenecks, for example on single workstations where memory and bandwidth are limited, or in HPC environments where data are stored separately from computational nodes. The difficulty of storing and analyzing spatial data from ecohydrology models limits our ability to harness these powerful tools. Big Data tools such as distributed databases have the potential to surmount the data storage and analysis challenges inherent to large spatial datasets. Distributed databases solve these problems by storing data close to computational nodes while enabling horizontal scalability and fault tolerance. Here we present the architecture of and preliminary results from PatchDB, a distributed datastore for managing spatial output from the Regional Hydro-Ecological Simulation System (RHESSys). The initial version of PatchDB uses message queueing to asynchronously write RHESSys model output to an Apache Cassandra cluster. Once stored in the cluster, these data can be efficiently queried to quickly produce both spatial visualizations for a particular variable (e.g. maps and animations), as well

  20. Distribution and abundance of predators that affect duck production--prairie pothole region

    USGS Publications Warehouse

    Sargeant, A.B.; Greenwood, R.J.; Sovada, M.A.; Shaffer, T.L.

    1993-01-01

    During 1983-88, the relative abundance of 18 species and species-groups of mammalian and avian predators affecting duck production in the prairie pothole region was determined in 33 widely scattered study areas ranging in size from 23-26 km2. Accounts of each studied species and species-group include habitat and history, population structure and reported densities, and information on distribution and abundance from the present study. Index values of undetected, scarce, uncommon, common, or numerous were used to rate abundance of nearly all species in each study area. Principal survey methods were livetrapping of striped skunks (Mephitis mephitis) and Franklin's ground squirrels (Spermophilus franklinii), systematic searches for carnivore tracks in quarter sections (0.65 km2), daily records of sightings of individual predator species, and systematic searches for occupied nests of tree-nesting avian predators. Abundances of predators in individual areas were studied 1-3 years.The distribution and abundance of predator species throughout the prairie pothole region have undergone continual change since settlement of the region by Europeans in the late 1800's. Predator populations in areas we studied differed markedly from those of pristine times. The changes occurred from habitat alterations, human-inflicted mortality of predators, and interspecific relations among predator species. Indices from surveys of tracks revealed a decline in the abundance of red foxes (Vulpes vulpes) and an albeit less consistent decline in the abundance of raccoons (Procyon lotor) with an increase in the abundance of coyotes (Canis latrans). Records of locations of occupied nests revealed great horned owls (Bubo virginianus) and red-tailed hawks (Buteo jamaicensis) tended to nest 0.5 km apart, and American crows (Corvus brachyrhynchos) tended to avoid nesting 0.5 km of nests of red-tailed hawks. Excluding large gulls, for which no measurements of abundance were obtained, the number of

  1. Spatial, Temporal, and Habitat-Related Variation in Abundance of Pelagic Fishes in the Gulf of Mexico: Potential Implications of the Deepwater Horizon Oil Spill

    PubMed Central

    Rooker, Jay R.; Kitchens, Larissa L.; Dance, Michael A.; Wells, R. J. David; Falterman, Brett; Cornic, Maëlle

    2013-01-01

    Time-series data collected over a four-year period were used to characterize patterns of abundance for pelagic fishes in the northern Gulf of Mexico (GoM) before (2007–2009) and after (2010) the Deepwater Horizon oil spill. Four numerically dominant pelagic species (blackfin tuna, blue marlin, dolphinfish, and sailfish) were included in our assessment, and larval density of each species was lower in 2010 than any of the three years prior to the oil spill, although larval abundance in 2010 was often statistically similar to other years surveyed. To assess potential overlap between suitable habitat of pelagic fish larvae and surface oil, generalized additive models (GAMs) were developed to evaluate the influence of ocean conditions on the abundance of larvae from 2007–2009. Explanatory variables from GAMs were then linked to environmental data from 2010 to predict the probability of occurrence for each species. The spatial extent of surface oil overlapped with early life habitat of each species, possibly indicating that the availability of high quality habitat was affected by the DH oil spill. Shifts in the distribution of spawning adults is another factor known to influence the abundance of larvae, and the spatial occurrence of a model pelagic predator (blue marlin) was characterized over the same four-year period using electronic tags. The spatial extent of oil coincided with areas used by adult blue marlin from 2007–2009, and the occurrence of blue marlin in areas impacted by the DH oil spill was lower in 2010 relative to pre-spill years. PMID:24130759

  2. Spatial, temporal, and habitat-related variation in abundance of pelagic fishes in the Gulf of Mexico: potential implications of the deepwater horizon oil spill.

    PubMed

    Rooker, Jay R; Kitchens, Larissa L; Dance, Michael A; Wells, R J David; Falterman, Brett; Cornic, Maëlle

    2013-01-01

    Time-series data collected over a four-year period were used to characterize patterns of abundance for pelagic fishes in the northern Gulf of Mexico (GoM) before (2007-2009) and after (2010) the Deepwater Horizon oil spill. Four numerically dominant pelagic species (blackfin tuna, blue marlin, dolphinfish, and sailfish) were included in our assessment, and larval density of each species was lower in 2010 than any of the three years prior to the oil spill, although larval abundance in 2010 was often statistically similar to other years surveyed. To assess potential overlap between suitable habitat of pelagic fish larvae and surface oil, generalized additive models (GAMs) were developed to evaluate the influence of ocean conditions on the abundance of larvae from 2007-2009. Explanatory variables from GAMs were then linked to environmental data from 2010 to predict the probability of occurrence for each species. The spatial extent of surface oil overlapped with early life habitat of each species, possibly indicating that the availability of high quality habitat was affected by the DH oil spill. Shifts in the distribution of spawning adults is another factor known to influence the abundance of larvae, and the spatial occurrence of a model pelagic predator (blue marlin) was characterized over the same four-year period using electronic tags. The spatial extent of oil coincided with areas used by adult blue marlin from 2007-2009, and the occurrence of blue marlin in areas impacted by the DH oil spill was lower in 2010 relative to pre-spill years.

  3. Vertical and horizontal distributions of microbial abundances and enzymatic activities in propylene-glycol-affected soils.

    PubMed

    Biró, Borbála; Toscano, Giuseppe; Horváth, Nikoletta; Matics, Heléna; Domonkos, Mónika; Scotti, Riccardo; Rao, Maria A; Wejden, Bente; French, Helen K

    2014-01-01

    The natural microbial activity in the unsaturated soil is vital for protecting groundwater in areas where high loads of biodegradable contaminants are supplied to the surface, which usually is the case for airports using aircraft de-icing fluids (ADF) in the cold season. Horizontal and vertical distributions of microbial abundance were assessed along the western runway of Oslo Airport (Gardermoen, Norway) to monitor the effect of ADF dispersion with special reference to the component with the highest chemical oxygen demand (COD), propylene glycol (PG). Microbial abundance was evaluated by several biondicators: colony-forming units (CFU) of some physiological groups (aerobic and anaerobic heterotrophs and microscopic fungi), most probable numbers (MPN) of PG degraders, selected catabolic enzymatic activities (fluorescein diacetate (FDA) hydrolase, dehydrogenase, and β-glucosidase). High correlations were found between the enzymatic activities and microbial counts in vertical soil profiles. All microbial abundance indicators showed a steep drop in the first meter of soil depth. The vertical distribution of microbial abundance can be correlated by a decreasing exponential function of depth. The horizontal trend of microbial abundance (evaluated as total aerobic CFU, MPN of PG-degraders, and FDA hydrolase activity) assessed in the surface soil at an increasing distance from the runway is correlated negatively with the PG and COD loads, suggesting the relevance of other chemicals in the modulation of microbial growth. The possible role of potassium formate, component of runway de-icers, has been tested in the laboratory by using mixed cultures of Pseudomonas spp., obtained by enrichment with a selective PG medium from soil samples taken at the most contaminated area near the runway. The inhibitory effect of formate on the growth of PG degraders is proven by the reduction of biomass yield on PG in the presence of formate.

  4. Distribution and relative abundance of fishes in littoral areas of Chief Joseph Reservoir, Columbia River

    USGS Publications Warehouse

    Gadomski, Dena M.; Venditti, David A.; Robinson, T. Craig; Beeman, John W.; Maule, Alec G.

    2004-01-01

    We surveyed fish assemblages in littoral areas of Chief Joseph Reservoir of the upper Columbia River to aid in understanding this ecosystem. Fish distributions and abundances were examined during April-July 1999 in relation to environmental conditions in the reservoir. We also compared the fish assemblages in Chief Joseph reservoir in 1999 to a past study conducted during 1974-1975, and to assemblages in other areas of the Columbia River. During 67 hr of electrofishing and 78 beach seine hauls in Chief Joseph Reservoir, 7460 fishes representing 8 families were collected. The majority of the catch was native – northern pikeminnow; redside shiners; longnose, bridgelip, and largescale suckers; and sculpins. The most abundant introduced species was walleye, and one species, rainbow trout, was mostly of net-pen origin. Larger sizes of suckers and northern pikeminnow were most abundant in the upper reservoir, likely due to upstream spawning migrations. The lower reservoir contained greater abundances of smaller fishes, and this area had lower flows, smaller substrates, and more complex shorelines that offered these fishes refugia. Only adult suckers displayed significant differences in abundances related to substrate. The relative abundances of species appeared to have changed since the 1970s, when the dominant fishes were northern pikeminnow, peamouth, largescale suckers, and walleye. Fish assemblage differences between Chief Joseph Reservoir and lower Columbia River reservoirs were also evident due to the morphology of the reservoir, its more northerly location, and the lack of fish passage facilities at Chief Joseph Dam. Our study is one of the few descriptions of fishes in the upper Columbia Rivers.

  5. Unbiased estimators for spatial distribution functions of classical fluids.

    PubMed

    Adib, Artur B; Jarzynski, Christopher

    2005-01-01

    We use a statistical-mechanical identity closely related to the familiar virial theorem, to derive unbiased estimators for spatial distribution functions of classical fluids. In particular, we obtain estimators for both the fluid density rho(r) in the vicinity of a fixed solute and the pair correlation g(r) of a homogeneous classical fluid. We illustrate the utility of our estimators with numerical examples, which reveal advantages over traditional histogram-based methods of computing such distributions.

  6. Spatial and temporal patterns in bacterial abundance, production and viral infection in a temporarily open/closed southern African estuary

    NASA Astrophysics Data System (ADS)

    Allan, E. L.; Froneman, P. W.

    2008-05-01

    The spatial and temporal patterns in bacterial abundance, biomass, production, nanoflagellate abundance and the loss of bacterial production due to viral lysis were investigated in a temporarily open/closed estuary along the eastern seaboard of southern Africa over the period May 2006 to April 2007. Bacterial abundance, biomass and production ranged between 1.00 × 10 9 and 4.93 × 10 9 cells l -1, 32.43 and 108.59 μg C l -1 and 0.01 and 1.99 μg C l -1 h -1, respectively. With a few exceptions there were no significant spatial patterns in the values ( P > 0.05). Bacterial abundance, biomass and production, however, demonstrated a distinct temporal pattern with the lowest values consistently recorded during the winter months. Bacterial dynamics showed no effect of mouth opening events. Nanoflagellate and bacterial abundances were significantly correlated to one another ( P < 0.05) suggesting a strong predator-prey relationship. The frequency of visibly infected bacterial cells and the number of virus particles within each bacterial cell during the study demonstrated no significant temporal or spatial pattern ( P > 0.05) and ranged from 0.5 to 6.1% and 12.0 to 37.5 virus particles per bacterium, respectively. Viral infection and lysis was thus a constant source of bacterial mortality throughout the year. The estimated percentage of bacterial production removed by viral lysis ranged between 7.8 and 88.9% (mean = 30.3%) of the total which suggests that viral lysis represents a very important source of bacterial mortality during the study.

  7. Abundance, distribution, and removals of feral pigs at Big Island National Wildlife Refuge Complex 2010–2015

    USGS Publications Warehouse

    Leopold, Christina R.; Hess, Steve; Kendall, Steve J.; Judge, Seth W.

    2016-01-01

    The Hakalau Forest Unit (HFU) of Big Island National Wildlife Refuge Complex (BINWRC) has intensively monitored non-native ungulate presence and distribution during surveys of all managed areas since 1988. In this report we: 1) provide results from recent ungulate surveys and the number of removals at HFU to determine the distribution, abundance, and efficacy of removals of feral pigs, the dominant ungulate, from 2010 to 2015; 2) present results of surveys of the presence and distribution of several ungulate species at the Kona Forest Unit (KFU) of BINWRC from November of 2012 to April of 2015; 3) present results of surveys of weed presence and cover at both refuge units; and 4) present comparative analyses of forest canopy cover at KFU from visual estimates and geospatial imagery. Removals of feral pigs at HFU appear to have significantly decreased pig abundance over the study period from 2010–2015. A grand total of 1,660 feral pigs were removed from managed areas of HFU from 2010 until September of 2015. Management units 2 and 4 contained the majority of pigs at HFU. Recent surveys recorded high densities of pigs in the unenclosed, unmanaged area of Lower Maulua, reaching 14.9 ± (3.2) pigs/km2 in March of 2015. The total amount of ungulate sign ranged from 22.2 to 54.3 percent of plots surveyed at KFU from November of 2012 to April of 2015. The ability to differentiate sign of ungulate species remains problematic at KFU; although there appears to have been a significant decline in feral cattle sign at KFU, this result is likely to be unreliable because cattle and pig sign were not differentiated consistently during later surveys. Spatial distributions in weed cover are distinctive; however, some weed species may not be reliably represented due to observers’ inconsistencies in recording data and abilities to recognize less common weeds.

  8. Distribution of viral abundance in the reef environment of Key Largo, Florida.

    PubMed

    Paul, J H; Rose, J B; Jiang, S C; Kellogg, C A; Dickson, L

    1993-03-01

    The distribution of viral and microbial abundance in the Key Largo, Fla., reef environment was measured. Viral abundance was measured by transmission electron microscope direct counts and plaque titer on specific bacterial hosts in water and sediment samples from Florida Bay (Blackwater Sound) and along a transect from Key Largo to the outer edge of the reef tract in Key Largo Sanctuary. Water column viral direct counts were highest in Blackwater Sound of Florida Bay (1.2 x 10(7) viruses per ml), decreased to the shelf break (1.7 x 10(6) viruses per ml), and were inversely correlated with salinity (r = -0.97). Viral direct counts in sediment samples ranged from 1.35 x 10(8) to 5.3 x 10(8)/cm(3) of sediment and averaged nearly 2 orders of magnitude greater than counts in the water column. Viral direct counts (both sediment and water column measurements) exceeded plaque titers on marine bacterial hosts (Vibrio natriegens and others) by 7 to 8 orders of magnitude. Water column viral abundance did not correlate with bacterial direct counts or chlorophyll a measurements, and sediment viral parameters did not correlate with water column microbial, viral, or salinity data. Coliphage, which are indicators of fecal pollution, were detected in two water column samples and most sediment samples, yet their concentrations were relatively low (<2 to 15/liter for water column samples, and <2 to 108/cm(3) of sediment). Our findings indicate that viruses are abundant in the Key Largo environment, particularly on the Florida Bay side of Key Largo, and that processes governing their distribution in the water column (i.e., salinity and freshwater input) are independent of those governing their distribution in the sediment environment.

  9. Using species abundance distribution models and diversity indices for biogeographical analyses

    NASA Astrophysics Data System (ADS)

    Fattorini, Simone; Rigal, François; Cardoso, Pedro; Borges, Paulo A. V.

    2016-01-01

    We examine whether Species Abundance Distribution models (SADs) and diversity indices can describe how species colonization status influences species community assembly on oceanic islands. Our hypothesis is that, because of the lack of source-sink dynamics at the archipelago scale, Single Island Endemics (SIEs), i.e. endemic species restricted to only one island, should be represented by few rare species and consequently have abundance patterns that differ from those of more widespread species. To test our hypothesis, we used arthropod data from the Azorean archipelago (North Atlantic). We divided the species into three colonization categories: SIEs, archipelagic endemics (AZEs, present in at least two islands) and native non-endemics (NATs). For each category, we modelled rank-abundance plots using both the geometric series and the Gambin model, a measure of distributional amplitude. We also calculated Shannon entropy and Buzas and Gibson's evenness. We show that the slopes of the regression lines modelling SADs were significantly higher for SIEs, which indicates a relative predominance of a few highly abundant species and a lack of rare species, which also depresses diversity indices. This may be a consequence of two factors: (i) some forest specialist SIEs may be at advantage over other, less adapted species; (ii) the entire populations of SIEs are by definition concentrated on a single island, without possibility for inter-island source-sink dynamics; hence all populations must have a minimum number of individuals to survive natural, often unpredictable, fluctuations. These findings are supported by higher values of the α parameter of the Gambin mode for SIEs. In contrast, AZEs and NATs had lower regression slopes, lower α but higher diversity indices, resulting from their widespread distribution over several islands. We conclude that these differences in the SAD models and diversity indices demonstrate that the study of these metrics is useful for

  10. Validating a spatially distributed hydrological model with soil morphology data

    NASA Astrophysics Data System (ADS)

    Doppler, T.; Honti, M.; Zihlmann, U.; Weisskopf, P.; Stamm, C.

    2013-10-01

    Spatially distributed hydrological models are popular tools in hydrology and they are claimed to be useful to support management decisions. Despite the high spatial resolution of the computed variables, calibration and validation is often carried out only on discharge time-series at specific locations due to the lack of spatially distributed reference data. Because of this restriction, the predictive power of these models, with regard to predicted spatial patterns, can usually not be judged. An example of spatial predictions in hydrology is the prediction of saturated areas in agricultural catchments. These areas can be important source areas for the transport of agrochemicals to the stream. We set up a spatially distributed model to predict saturated areas in a 1.2 km2 catchment in Switzerland with moderate topography. Around 40% of the catchment area are artificially drained. We measured weather data, discharge and groundwater levels in 11 piezometers for 1.5 yr. For broadening the spatially distributed data sets that can be used for model calibration and validation, we translated soil morphological data available from soil maps into an estimate of the duration of soil saturation in the soil horizons. We used redox-morphology signs for these estimates. This resulted in a data set with high spatial coverage on which the model predictions were validated. In general, these saturation estimates corresponded well to the measured groundwater levels. We worked with a model that would be applicable for management decisions because of its fast calculation speed and rather low data requirements. We simultaneously calibrated the model to the groundwater levels in the piezometers and discharge. The model was able to reproduce the general hydrological behavior of the catchment in terms of discharge and absolute groundwater levels. However, the accuracy of the groundwater level predictions was not high enough to be used for the prediction of saturated areas. The groundwater

  11. Distribution of known macrozooplankton abundance and biomass in the global ocean

    NASA Astrophysics Data System (ADS)

    Moriarty, R.; Buitenhuis, E. T.; Le Quéré, C.; Gosselin, M.-P.

    2012-04-01

    Macrozooplankton are an important link between higher and lower trophic levels in the oceans. They serve as the primary food for fish, reptiles, birds and mammals in some regions, and play a role in the export of carbon from the surface to the intermediate and deep ocean. Little, however, is known of their global distribution and biomass. Here we compiled a dataset of macrozooplankton abundance and biomass observations for the global ocean from a collection of four datasets. We harmonise the data to common units, calculate additional carbon biomass where possible, and bin the dataset in a global 1 × 1 degree grid. This dataset is part of a wider effort to provide a global picture of carbon biomass data for key plankton functional types, in particular to support the development of marine ecosystem models. Over 387 700 abundance data and 1330 carbon biomass data have been collected from pre-existing datasets. A further 34 938 abundance data were converted to carbon biomass data using species-specific length frequencies or using species-specific abundance to carbon biomass data. Depth-integrated values are used to calculate known epipelagic macrozooplankton biomass concentrations and global biomass. Global macrozooplankton biomass has a mean of 8.4 μg C l-1, median of 0.15 μg C l-1 and a standard deviation of 63.46 μg C l-1. The global annual average estimate of epipelagic macrozooplankton, based on the median value, is 0.02 Pg C. Biomass is highest in the tropics, decreasing in the sub-tropics and increasing slightly towards the poles. There are, however, limitations on the dataset; abundance observations have good coverage except in the South Pacific mid latitudes, but biomass observation coverage is only good at high latitudes. Biomass is restricted to data that is originally given in carbon or to data that can be converted from abundance to carbon. Carbon conversions from abundance are restricted in the most part by the lack of information on the size of the

  12. Mechanical Motion Induced by Spatially Distributed Limit-Cycle Oscillators

    NASA Astrophysics Data System (ADS)

    Sakaguchi, Hidetsugu; Mukae, Yuuki

    2017-03-01

    Spatially distributed limited-cycle oscillators are seen in various physical and biological systems. In internal organs, mechanical motions are induced by the stimuli of spatially distributed limit-cycle oscillators. We study several mechanical motions by limit-cycle oscillators using simple model equations. One problem is deformation waves of radius oscillation induced by desynchronized limit-cycle oscillators, which is motivated by peristaltic motion of the small intestine. A resonance-like phenomenon is found in the deformation waves, and particles can be transported by the deformation waves. Another is the beating motion of the heart. The expansion and contraction motion is realized by a spatially synchronized limit-cycle oscillation; however, the strong beating disappears by spiral chaos, which is closely related to serious arrhythmia in the heart.

  13. Effect of habitat complexity on richness, abundance and distributional pattern of forest birds.

    PubMed

    Ghadiri Khanaposhtani, Maryam; Kaboli, Mohammad; Karami, Mahmoud; Etemad, Vahid

    2012-08-01

    Structurally complex forests provide more diverse conditions in comparison to homogenous forests because of greater variety of microhabitats and trees. This study assesses the association of bird species richness, abundance, and distributional pattern with habitat complexity (HC) in Kheyrud Forest in the north of Iran. Birds were surveyed during spring 2009 by 100 point counts. In each point count six habitat features related to the index of HC were computed and scored from 0 to 3. Then the scores were summed and divided into two groups of low and high complexity, HC ≤ 6 and HC > 6, respectively. To compare bird richness and abundance in different HCs, a two sample t-test was used. Presence and absence of bird species at each plot as a dependent variable were compared with the vegetation characteristics as an independent variable by means of the Canonical Correspondence Analysis. The results revealed bird species richness and abundance were significantly higher in more complex habitats. Bird species can be divided into two groups, the first group including species which associated with late successional stages and the second group, species belonging to early successional stages. Numbers of birds belonging to the first group declined in less complex forests, whereas the numbers of birds belonging to the second group increased. At the stand scale, our results reveal that bird abundance and richness are strongly associated with the complexity of vegetation structure in the study area.

  14. Effect of Habitat Complexity on Richness, Abundance and Distributional Pattern of Forest Birds

    NASA Astrophysics Data System (ADS)

    Ghadiri Khanaposhtani, Maryam; Kaboli, Mohammad; Karami, Mahmoud; Etemad, Vahid

    2012-08-01

    Structurally complex forests provide more diverse conditions in comparison to homogenous forests because of greater variety of microhabitats and trees. This study assesses the association of bird species richness, abundance, and distributional pattern with habitat complexity (HC) in Kheyrud Forest in the north of Iran. Birds were surveyed during spring 2009 by 100 point counts. In each point count six habitat features related to the index of HC were computed and scored from 0 to 3. Then the scores were summed and divided into two groups of low and high complexity, HC ≤ 6 and HC > 6, respectively. To compare bird richness and abundance in different HCs, a two sample t-test was used. Presence and absence of bird species at each plot as a dependent variable were compared with the vegetation characteristics as an independent variable by means of the Canonical Correspondence Analysis. The results revealed bird species richness and abundance were significantly higher in more complex habitats. Bird species can be divided into two groups, the first group including species which associated with late successional stages and the second group, species belonging to early successional stages. Numbers of birds belonging to the first group declined in less complex forests, whereas the numbers of birds belonging to the second group increased. At the stand scale, our results reveal that bird abundance and richness are strongly associated with the complexity of vegetation structure in the study area.

  15. Spatial distribution of pipe collapses in Goodwin Creek Watershed, Mississippi

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Internal erosion of soil pipes can induce pipe collapses that affect soil erosion process and landform evolution. The objective of this study was to determine the spatial distribution of pipe collapses in agricultural fields of Goodwin Creek watershed. Ground survey was carried out to detect pipe co...

  16. A crucial role for spatial distribution in bacterial quorum sensing

    PubMed Central

    Gao, Meng; Zheng, Huizhen; Ren, Ying; Lou, Ruyun; Wu, Fan; Yu, Weiting; Liu, Xiudong; Ma, Xiaojun

    2016-01-01

    Quorum sensing (QS) is a process that enables bacteria to communicate using secreted signaling molecules, and then makes a population of bacteria to regulate gene expression collectively and control behavior on a community-wide scale. Theoretical studies of efficiency sensing have suggested that both mass-transfer performance in the local environment and the spatial distribution of cells are key factors affecting QS. Here, an experimental model based on hydrogel microcapsules with a three-dimensional structure was established to investigate the influence of the spatial distribution of cells on bacterial QS. Vibrio harveyi cells formed different spatial distributions in the microcapsules, i.e., they formed cell aggregates with different structures and sizes. The cell aggregates displayed stronger QS than did unaggregated cells even when equal numbers of cells were present. Large aggregates (LA) of cells, with a size of approximately 25 μm, restricted many more autoinducers (AIs) than did small aggregates (SA), with a size of approximately 10 μm, thus demonstrating that aggregate size significantly affects QS. These findings provide a powerful demonstration of the fact that the spatial distribution of cells plays a crucial role in bacterial QS. PMID:27698391

  17. Dynamics of strongly coupled spatially distributed logistic equations with delay

    NASA Astrophysics Data System (ADS)

    Kashchenko, I. S.; Kashchenko, S. A.

    2015-04-01

    The dynamics of a system of two logistic delay equations with spatially distributed coupling is studied. The coupling coefficient is assumed to be sufficiently large. Special nonlinear systems of parabolic equations are constructed such that the behavior of their solutions is determined in the first approximation by the dynamical properties of the original system.

  18. Recording the spatial distribution of coherent-radiation intensity

    SciTech Connect

    Zaslavskii, V.Y.; Przhevskii, S.S.; Shalomeeva, N.V.

    1986-01-01

    This paper discusses the feasibility of recording the spatial distribution of laser-radiation intensity, which is proven theoretically and confirmed by experiment. The authors consider the influence of the inhomogeneity and the wave front of radiation within the confines of a focusing optical element on the character of the diffracted image of the element.

  19. Spatial distribution read-out system for thermoluminescence sheets

    NASA Technical Reports Server (NTRS)

    Yamamoto, I.; Tomiyama, T.; Imaeda, K.; Ninagawa, K.; Wada, T.; Yamashita, Y.; Misaki, A.

    1985-01-01

    A spatial distribution read-out system of thermoluminescence (TL) sheets is developed. This system consists of high gain image intensifier, a CCD-TV camera, a video image processor and a host computer. This system has been applied to artificial TL sheets (BaSO4:Eu doped) for detecting high energy electromagnetic shower and heavy nuclei tracks.

  20. At-sea distribution and abundance of seabirds off southern California: A 20-year comparison

    USGS Publications Warehouse

    Mason, J.W.; McChesney, G.J.; McIver, W.R.; Carter, H.R.; Takekawa, J.Y.; Golightly, R.T.; Ackerman, J.T.; Orthmeyer, D.L.; Perry, W.M.; Yee, J.L.; Pierson, M.O.; McCrary, M.D.

    2007-01-01

    We conducted aerial at-sea and coastal surveys to examine the distribution and abundance of seabirds off southern California, from Cambria, California, to the Mexican border. From May 1999-January 2002, we flew 102 d, covered >54,640 km of transect lines, and conducted nine complete surveys of southern California in January, May, and September. We identified 54 species comprising 12 families and counted >135,000 individuals. Seabird densities were greater along island and mainland coastlines than at sea and were usually greatest in January surveys. Densities were greatest at sea near the northern Channel Islands in January and north of Point Conception in May, and lowest in the southwestern portion of the Southern California Bight in all survey months. On coastal transects, seabird densities were greatest along central and southern portions of the mainland coastline from Point Arguello to Mexico. We estimated that 981,000 ?? 144,000 (x?? ?? SE) seabirds occurred in the study area in January, 862,000 ?? 95,000 in May, and 762,000 ?? 72,000 in September. California Gulls (Larus californicus), Western Grebes (Aechmophorus occidentalis), and Cassin's Auklets (Ptychoramphus aleuticus) were most abundant in January surveys at sea, whereas Sooty and Short-tailed shearwaters (Puffinus griseus and P. tenuirostris), phalaropes (Phalaropus spp.), and Western Gulls (Larus. occidentalis) were most abundant in May and September surveys. On coastal transects, California Gulls, Western Grebes, Western Gulls, and Surf Scoters (Melanitta perspicillata) were most abundant in January; Western Grebes, Western Gulls, Surf Scoters, and Brown Pelicans (Pelecanus occidentalis) were most abundant in May; and Sooty Shearwaters, Short-tailed Shearwaters, Western Gulls, Western Grebes, Brown Pelicans, and Heermann's Gulls (Larus heermanni) were most abundant in September. Compared to historical seabird densities collected in the same area two decades ago (1975-1978 and 1980-1983), abundance

  1. Spatial distribution of metabolites in the human lens.

    PubMed

    Tamara, Semen O; Yanshole, Lyudmila V; Yanshole, Vadim V; Fursova, Anjella Zh; Stepakov, Denis A; Novoselov, Vladimir P; Tsentalovich, Yuri P

    2016-02-01

    Spatial distribution of 34 metabolites along the optical and equatorial axes of the human lens has been determined. For the majority of metabolites, the homogeneous distribution has been observed. That suggests that the rate of the metabolite transformation in the lens is low due to the general metabolic passivity of the lens fiber cells. However, the redox processes are active in the lens; as a result, some metabolites, including antioxidants, demonstrate the "nucleus-depleted" type of distribution, whereas secondary UV filters show the "nucleus-enriched" type. The metabolite concentrations at the lens poles and equator are similar for all metabolites under study. The concentric pattern of the "nucleus-depleted" and "nucleus-enriched" distributions testifies that the metabolite distribution inside the lens is mostly governed by a passive diffusion, relatively free along the fiber cells and retarded in the radial direction across the cells. No significant difference in the metabolite distribution between the normal and cataractous human lenses was found.

  2. Spatial Distribution of Oak Mistletoe as It Relates to Habits of Oak Woodland Frugivores

    PubMed Central

    Wilson, Ethan A.; Sullivan, Patrick J.; Dickinson, Janis L.

    2014-01-01

    This study addresses the underlying spatial distribution of oak mistletoe, Phoradendron villosum, a hemi-parasitic plant that provides a continuous supply of berries for frugivorous birds overwintering the oak savanna habitat of California's outer coast range. As the winter community of birds consuming oak mistletoe varies from group-living territorial species to birds that roam in flocks, we asked if mistletoe volume was spatially autocorrelated at the scale of persistent territories or whether the patterns predicted by long-term territory use by western bluebirds are overcome by seed dispersal by more mobile bird species. The abundance of mistletoe was mapped on trees within a 700 ha study site in Carmel Valley, California. Spatial autocorrelation of mistletoe volume was analyzed using the variogram method and spatial distribution of oak mistletoe trees was analyzed using Ripley's K and O-ring statistics. On a separate set of 45 trees, mistletoe volume was highly correlated with the volume of female, fruit-bearing plants, indicating that overall mistletoe volume is a good predictor of fruit availability. Variogram analysis showed that mistletoe volume was spatially autocorrelated up to approximately 250 m, a distance consistent with persistent territoriality of western bluebirds and philopatry of sons, which often breed next door to their parents and are more likely to remain home when their parents have abundant mistletoe. Using Ripley's K and O-ring analyses, we showed that mistletoe trees were aggregated for distances up to 558 m, but for distances between 558 to 724 m the O-ring analysis deviated from Ripley's K in showing repulsion rather than aggregation. While trees with mistletoe were aggregated at larger distances, mistletoe was spatially correlated at a smaller distance, consistent with what is expected based on persistent group territoriality of western bluebirds in winter and the extreme philopatry of their sons. PMID:25389971

  3. Spatial distribution of oak mistletoe as it relates to habits of oak woodland frugivores.

    PubMed

    Wilson, Ethan A; Sullivan, Patrick J; Dickinson, Janis L

    2014-01-01

    This study addresses the underlying spatial distribution of oak mistletoe, Phoradendron villosum, a hemi-parasitic plant that provides a continuous supply of berries for frugivorous birds overwintering the oak savanna habitat of California's outer coast range. As the winter community of birds consuming oak mistletoe varies from group-living territorial species to birds that roam in flocks, we asked if mistletoe volume was spatially autocorrelated at the scale of persistent territories or whether the patterns predicted by long-term territory use by western bluebirds are overcome by seed dispersal by more mobile bird species. The abundance of mistletoe was mapped on trees within a 700 ha study site in Carmel Valley, California. Spatial autocorrelation of mistletoe volume was analyzed using the variogram method and spatial distribution of oak mistletoe trees was analyzed using Ripley's K and O-ring statistics. On a separate set of 45 trees, mistletoe volume was highly correlated with the volume of female, fruit-bearing plants, indicating that overall mistletoe volume is a good predictor of fruit availability. Variogram analysis showed that mistletoe volume was spatially autocorrelated up to approximately 250 m, a distance consistent with persistent territoriality of western bluebirds and philopatry of sons, which often breed next door to their parents and are more likely to remain home when their parents have abundant mistletoe. Using Ripley's K and O-ring analyses, we showed that mistletoe trees were aggregated for distances up to 558 m, but for distances between 558 to 724 m the O-ring analysis deviated from Ripley's K in showing repulsion rather than aggregation. While trees with mistletoe were aggregated at larger distances, mistletoe was spatially correlated at a smaller distance, consistent with what is expected based on persistent group territoriality of western bluebirds in winter and the extreme philopatry of their sons.

  4. Distribution and abundance of marine bird and pinniped populations within Port Foster, Deception Island, Antarctica

    NASA Astrophysics Data System (ADS)

    Kendall, Katrina A.; Ruhl, Henry A.; Wilson, Robert C.

    2003-06-01

    Seabirds and pinnipeds were surveyed during four cruises from March 1999 to November 2000 at Port Foster, Deception Island, Antarctica. Abundances and distributions of three species of pinnipeds, Arctocephalus gazella (Antarctic fur seals), Leptonychotes weddelli (Weddell seals), and Lobodon carcinophagus (crabeater seals), and 11 species of marine birds were documented within Port Foster. A. gazella was the dominant pinniped within Port Foster; its abundance has increased since the 1986/87 austral summer season. A. gazella were concentrated at the entrance to Port Foster. More pinnipeds were observed during the austral summer than during the spring. The most dominant seabird, Pygoscelis antarctica (chinstrap penguin), was concentrated along the rocky cliffs behind the beaches where A. gazella hauled out. Larus dominicanus (kelp gull) and Daption capense (cape petrel) were the most dominant flying seabirds. All other seabird species were more widely distributed around Port Foster than P. antarctica. There was no clear trend in abundances of seabirds over the study period. It is possible that the protected area of Port Foster provides refuge for vagrants of colonies along the outer periphery of the island and as a stopover point for migrating species.

  5. Fractal nature of hydrocarbon deposits. 2. Spatial distribution

    SciTech Connect

    Barton, C.C.; Schutter, T.A; Herring, P.R.; Thomas, W.J. ); Scholz, C.H. )

    1991-03-01

    Hydrocarbons are unevenly distributed within reservoirs and are found in patches whose size distribution is a fractal over a wide range of scales. The spatial distribution of the patches is also fractal and this can be used to constrain the design of drilling strategies also defined by a fractal dimension. Fractal distributions are scale independent and are characterized by a power-law scaling exponent termed the fractal dimension. The authors have performed fractal analyses on the spatial distribution of producing and showing wells combined and of dry wells in 1,600-mi{sup 2} portions of the Denver and Powder River basins that were nearly completely drilled on quarter-mile square-grid spacings. They have limited their analyses to wells drilled to single stratigraphic intervals so that the map pattern revealed by drilling is representative of the spatial patchiness of hydrocarbons at depth. The fractal dimensions for the spatial patchiness of hydrocarbons in the two basins are 1.5 and 1.4, respectively. The fractal dimension for the pattern of all wells drilled is 1.8 for both basins, which suggests a drilling strategy with a fractal dimension significantly higher than the dimensions 1.5 and 1.4 sufficient to efficiently and economically explore these reservoirs. In fact, the fractal analysis reveals that the drilling strategy used in these basins approaches a fractal dimension of 2.0, which is equivalent to random drilling with no geologic input. Knowledge of the fractal dimension of a reservoir prior to drilling would provide a basis for selecting and a criterion for halting a drilling strategy for exploration whose fractal dimension closely matches that of the spatial fractal dimension of the reservoir, such a strategy should prove more efficient and economical than current practice.

  6. Woodland type and spatial distribution of nymphal Ixodes scapularis (Acari: Ixodidae)

    USGS Publications Warehouse

    Ginsberg, Howard S.; Zhioua, Elyes; Mitra, Shaibal; Fischer, Jason L.; Buckley, P.A.; Verret, Frank; Underwood, H. Brian; Buckley, Francine G.

    2004-01-01

    Spatial distribution patterns of black-legged ticks, Ixodes scapularis, in deciduous and coniferous woodlands were studied by sampling ticks in different woodland types and at sites from which deer had been excluded and by quantifying movement patterns of tick host animals (mammals and birds) at the Lighthouse Tract, Fire Island, NY, from 1994 to 2000. Densities of nymphal ticks were greater in deciduous than coniferous woods in 3 of 7 yr. Only engorged ticks survived the winter, and overwintering survival of engorged larvae in experimental enclosures did not differ between deciduous and coniferous woods. Nymphs were not always most abundant in the same forest type as they had been as larvae, and the habitat shift between life stages differed in direction in different years. Therefore, forest type by itself did not account for tick distribution patterns. Nymphal densities were lower where deer had been excluded compared with areas with deer present for 3 yr after exclusion, suggesting that movement patterns of vertebrate hosts influenced tick distribution, but nymphal densities increased dramatically in one of the enclosures in the fourth year. Therefore, movements of ticks on animal hosts apparently contribute substantially to tick spatial distribution among woodland types, but the factor(s) that determine spatial distribution of nymphal I. scapularis shift from year to year.

  7. Satellite-derived NDVI, LST, and climatic factors driving the distribution and abundance of Anopheles mosquitoes in a former malarious area in northwest Argentina.

    PubMed

    Dantur Juri, María Julia; Estallo, Elizabet; Almirón, Walter; Santana, Mirta; Sartor, Paolo; Lamfri, Mario; Zaidenberg, Mario

    2015-06-01

    Distribution and abundance of disease vectors are directly related to climatic conditions and environmental changes. Remote sensing data have been used for monitoring environmental conditions influencing spatial patterns of vector-borne diseases. The aim of this study was to analyze the effect of the Normalized Difference Vegetation Index (NDVI) and Land Surface Temperature (LST) obtained from the Moderate Resolution Imaging Spectroradiometer (MODIS), and climatic factors (temperature, humidity, wind velocity, and accumulated rainfall) on the distribution and abundance of Anopheles species in northwestern Argentina using Poisson regression analyses. Samples were collected from December, 2001 to December, 2005 at three localities, Aguas Blancas, El Oculto and San Ramón de la Nueva Orán. We collected 11,206 adult Anopheles species, with the major abundance observed at El Oculto (59.11%), followed by Aguas Blancas (22.10%) and San Ramón de la Nueva Orán (18.79%). Anopheles pseudopunctipennis was the most abundant species at El Oculto, Anopheles argyritarsis predominated in Aguas Blancas, and Anopheles strodei in San Ramón de la Nueva Orán. Samples were collected throughout the sampling period, with the highest peaks during the spring seasons. LST and mean temperature appear to be the most important variables determining the distribution patterns and major abundance of An. pseudopunctipennis and An. argyritarsis within malarious areas.

  8. Comparing Spatial Distributions of Solar Prominence Mass Derived from Coronal Absorption

    NASA Technical Reports Server (NTRS)

    Gilbert, Holly; Kilper, Gary; Alexander, David; Kucera, Therese

    2010-01-01

    In the present work we extend the use of this mass-inference technique to a sample of prominences observed in at least two coronal lines. This approach, in theory, allows a direct calculation of prominence mass and helium abundance and how these properties vary spatially and temporally. Our motivation is two-fold: to obtain a He(exp 0)/H(exp 0) abundance ratio, and to determine how the relative spatial distribution of the two species varies in prominences. The first of these relies on the theoretical expectation that the amount of absorption at each EUV wavelength is well-characterized. However, in this work we show that due to a saturation of the continuum absorption in the 625 A and 368 A lines (which have much higher opacity compared to 195 A-) the uncertainties in obtaining the relative abundances are too high to give meaningful estimates. This is an important finding because of its impact on future studies in this area. The comparison of the spatial distribution of helium and hydrogen presented here augments previous observational work indicating that cross-field diffusion of neutrals is an important mechanism for mass loss. Significantly different loss timescales for neutral He and H (helium drains much more rapidly than hydrogen) can impact prominence structure, and both the present and past studies suggest this mechanism is playing a role in structure and possibly dynamics. Section 2 of this paper contains a description of the observations and Section 3 summarizes the method used to infer mass along with the criteria imposed in choosing prominences appropriate for this study. Section 3 also contains a discussion of the problems due to limitations of the available data and the implications for determining relative abundances. We present our results in Section 4, including plots of radial-like scans of prominence mass in different lines to show the spatial distribution of the different species. The last section contains a discussion summarizing the importance

  9. Spatial and temporal distribution of anopheline larvae in two malarious areas in Sucre State, Venezuela.

    PubMed

    Berti, J; Zimmerman, R; Amarista, J

    1993-01-01

    The spatial and temporal distribution of anopheline larvae was studied in two coastal malarious areas of Sucre, State, Venezuela. Seven habitat types were sampled in the village of Guayana and eight species of Anopheles were collected. Anopheles aquasalis was the predominant species collected and was most abundant in the brackish marsh habitat (71 larvae per 100 samples). It was most abundant during the rainy season. At the second location, Santa Fé, six habitat types were sampled and four anopheline species were collected. Habitats where An. aquasalis was most abundant were temporary freshwater ponds (34 larvae per 100 samples) and mangroves (10.5 larvae per 100 samples). At this location it was also most abundant in the rainy season. During the dry season it was collected in small numbers in river pools (1.3 larvae per 100 samples) along with large numbers of An. pseudopunctipennis (479 larvae per 100 samples). Larval control could be an important component of the malaria control program because major habitats could be defined and presence and abundance of larvae was limited to specific times of year.

  10. Fitting statistical distributions to sea duck count data: implications for survey design and abundance estimation

    USGS Publications Warehouse

    Zipkin, Elise F.; Leirness, Jeffery B.; Kinlan, Brian P.; O'Connell, Allan F.; Silverman, Emily D.

    2014-01-01

    Determining appropriate statistical distributions for modeling animal count data is important for accurate estimation of abundance, distribution, and trends. In the case of sea ducks along the U.S. Atlantic coast, managers want to estimate local and regional abundance to detect and track population declines, to define areas of high and low use, and to predict the impact of future habitat change on populations. In this paper, we used a modified marked point process to model survey data that recorded flock sizes of Common eiders, Long-tailed ducks, and Black, Surf, and White-winged scoters. The data come from an experimental aerial survey, conducted by the United States Fish & Wildlife Service (USFWS) Division of Migratory Bird Management, during which east-west transects were flown along the Atlantic Coast from Maine to Florida during the winters of 2009–2011. To model the number of flocks per transect (the points), we compared the fit of four statistical distributions (zero-inflated Poisson, zero-inflated geometric, zero-inflated negative binomial and negative binomial) to data on the number of species-specific sea duck flocks that were recorded for each transect flown. To model the flock sizes (the marks), we compared the fit of flock size data for each species to seven statistical distributions: positive Poisson, positive negative binomial, positive geometric, logarithmic, discretized lognormal, zeta and Yule–Simon. Akaike’s Information Criterion and Vuong’s closeness tests indicated that the negative binomial and discretized lognormal were the best distributions for all species for the points and marks, respectively. These findings have important implications for estimating sea duck abundances as the discretized lognormal is a more skewed distribution than the Poisson and negative binomial, which are frequently used to model avian counts; the lognormal is also less heavy-tailed than the power law distributions (e.g., zeta and Yule–Simon), which are

  11. Regional Distribution Shifts Help Explain Local Changes in Wintering Raptor Abundance: Implications for Interpreting Population Trends

    PubMed Central

    Paprocki, Neil; Heath, Julie A.; Novak, Stephen J.

    2014-01-01

    Studies of multiple taxa across broad-scales suggest that species distributions are shifting poleward in response to global climate change. Recognizing the influence of distribution shifts on population indices will be an important part of interpreting trends within management units because current practice often assumes that changes in local populations reflect local habitat conditions. However, the individual- and population-level processes that drive distribution shifts may occur across a large, regional scale and have little to do with the habitats within the management unit. We examined the latitudinal center of abundance for the winter distributions of six western North America raptor species using Christmas Bird Counts from 1975–2011. Also, we considered whether population indices within western North America Bird Conservation Regions (BCRs) were explained by distribution shifts. All six raptors had significant poleward shifts in their wintering distributions over time. Rough-legged Hawks (Buteo lagopus) and Golden Eagles (Aquila chrysaetos) showed the fastest rate of change, with 8.41 km yr−1 and 7.74 km yr−1 shifts, respectively. Raptors may be particularly responsive to warming winters because of variable migration tendencies, intraspecific competition for nesting sites that drives males to winter farther north, or both. Overall, 40% of BCR population trend models were improved by incorporating information about wintering distributions; however, support for the effect of distribution on BCR indices varied by species with Rough-legged Hawks showing the most evidence. These results emphasize the importance of understanding how regional distribution shifts influence local-scale population indices. If global climate change is altering distribution patterns, then trends within some management units may not reflect changes in local habitat conditions. The methods used to monitor and manage bird populations within local BCRs will fundamentally change as

  12. Regional distribution shifts help explain local changes in wintering raptor abundance: implications for interpreting population trends.

    PubMed

    Paprocki, Neil; Heath, Julie A; Novak, Stephen J

    2014-01-01

    Studies of multiple taxa across broad-scales suggest that species distributions are shifting poleward in response to global climate change. Recognizing the influence of distribution shifts on population indices will be an important part of interpreting trends within management units because current practice often assumes that changes in local populations reflect local habitat conditions. However, the individual- and population-level processes that drive distribution shifts may occur across a large, regional scale and have little to do with the habitats within the management unit. We examined the latitudinal center of abundance for the winter distributions of six western North America raptor species using Christmas Bird Counts from 1975-2011. Also, we considered whether population indices within western North America Bird Conservation Regions (BCRs) were explained by distribution shifts. All six raptors had significant poleward shifts in their wintering distributions over time. Rough-legged Hawks (Buteo lagopus) and Golden Eagles (Aquila chrysaetos) showed the fastest rate of change, with 8.41 km yr(-1) and 7.74 km yr(-1) shifts, respectively. Raptors may be particularly responsive to warming winters because of variable migration tendencies, intraspecific competition for nesting sites that drives males to winter farther north, or both. Overall, 40% of BCR population trend models were improved by incorporating information about wintering distributions; however, support for the effect of distribution on BCR indices varied by species with Rough-legged Hawks showing the most evidence. These results emphasize the importance of understanding how regional distribution shifts influence local-scale population indices. If global climate change is altering distribution patterns, then trends within some management units may not reflect changes in local habitat conditions. The methods used to monitor and manage bird populations within local BCRs will fundamentally change as

  13. Abundance, trends and distribution of baleen whales off Western Alaska and the central Aleutian Islands

    NASA Astrophysics Data System (ADS)

    Zerbini, Alexandre N.; Waite, Janice M.; Laake, Jeffrey L.; Wade, Paul R.

    2006-11-01

    Large whales were extensively hunted in coastal waters off Alaska, but current distribution, population sizes and trends are poorly known. Line transect surveys were conducted in coastal waters of the Aleutian Islands and the Alaska Peninsula in the summer of 2001-2003. Abundances of three species were estimated by conventional and multiple covariate distance sampling (MCDS) methods. Time series of abundance estimates were used to derive rates of increase for fin whales ( Balaenoptera physalus) and humpback whales ( Megaptera novaeangliae). Fin whales occurred primarily from the Kenai Peninsula to the Shumagin Islands, but were abundant only near the Semidi Islands and Kodiak. Humpback whales were found from the Kenai Peninsula to Umnak Island and were more abundant near Kodiak, the Shumagin Islands and north of Unimak Pass. Minke whales ( B. acutorostrata) occurred primarily in the Aleutian Islands, with a few sightings south of the Alaska Peninsula and near Kodiak Island. Humpback whales were observed in large numbers in their former whaling grounds. In contrast, high densities of fin whales were not observed around the eastern Aleutian Islands, where whaling occurred. Average abundance estimates (95% CI) for fin, humpback and minke whales were 1652 (1142-2389), 2644 (1899-3680), and 1233 (656-2315), respectively. Annual rates of increase were estimated at 4.8% (95% CI=4.1-5.4%) for fin and 6.6% (5.2-8.6%) for humpback whales. This study provides the first estimate of the rate of increase of fin whales in the North Pacific Ocean. The estimated trends are consistent with those of other recovering baleen whales. There were no sightings of blue or North Pacific right whales, indicating the continued depleted status of these species.

  14. Probabilisitc Geobiological Classification Using Elemental Abundance Distributions and Lossless Image Compression in Recent and Modern Organisms

    NASA Technical Reports Server (NTRS)

    Storrie-Lombardi, Michael C.; Hoover, Richard B.

    2005-01-01

    Last year we presented techniques for the detection of fossils during robotic missions to Mars using both structural and chemical signatures[Storrie-Lombardi and Hoover, 2004]. Analyses included lossless compression of photographic images to estimate the relative complexity of a putative fossil compared to the rock matrix [Corsetti and Storrie-Lombardi, 2003] and elemental abundance distributions to provide mineralogical classification of the rock matrix [Storrie-Lombardi and Fisk, 2004]. We presented a classification strategy employing two exploratory classification algorithms (Principal Component Analysis and Hierarchical Cluster Analysis) and non-linear stochastic neural network to produce a Bayesian estimate of classification accuracy. We now present an extension of our previous experiments exploring putative fossil forms morphologically resembling cyanobacteria discovered in the Orgueil meteorite. Elemental abundances (C6, N7, O8, Na11, Mg12, Ai13, Si14, P15, S16, Cl17, K19, Ca20, Fe26) obtained for both extant cyanobacteria and fossil trilobites produce signatures readily distinguishing them from meteorite targets. When compared to elemental abundance signatures for extant cyanobacteria Orgueil structures exhibit decreased abundances for C6, N7, Na11, All3, P15, Cl17, K19, Ca20 and increases in Mg12, S16, Fe26. Diatoms and silicified portions of cyanobacterial sheaths exhibiting high levels of silicon and correspondingly low levels of carbon cluster more closely with terrestrial fossils than with extant cyanobacteria. Compression indices verify that variations in random and redundant textural patterns between perceived forms and the background matrix contribute significantly to morphological visual identification. The results provide a quantitative probabilistic methodology for discriminating putatitive fossils from the surrounding rock matrix and &om extant organisms using both structural and chemical information. The techniques described appear applicable

  15. Flea species infesting dogs in Spain: updated spatial and seasonal distribution patterns.

    PubMed

    Gálvez, R; Montoya, A; Checa, R; Martín, O; Marino, V; Miró, G

    2017-03-01

    This entomological survey examines the spatial and seasonal distribution patterns of flea species infesting dogs in Spain. Bioclimatic zones covering broad climate and vegetation ranges were surveyed according to size. In a cross-sectional spatial survey carried out from late May 2013 to mid-July 2015, 1084 dogs from 42 different locations were examined. A total of 3032 fleas were collected and identified as belonging to the following species: Ctenocephalides felis (Siphonaptera: Pulicidae) (81.7%, 2476 fleas); Ctenocephalides canis (11.4%, 347 fleas); Pulex irritans (Siphonaptera: Pulicidae) (6.9%, 208 fleas), and Echidnophaga gallinacea (Siphonaptera: Pulicidae) (0.03%, one flea). Variables observed to have effects on flea abundance were animal weight, sex, length of hair and habitat. In the seasonal survey conducted from June 2014 to June 2015, 1014 fleas were collected from 239 dogs at 30 veterinary practices across Spain. Peaks in C. felis abundance were observed in early summer and late autumn, whereas high numbers of P. irritans and C. canis were recorded in autumn. Numbers of fleas detected in winter were low overall. Based on these findings, the present study updates the spatial and seasonal distributions of flea species in Spain and assesses the impacts of host and habitat variables on flea infestation.

  16. Distribution and relative abundance of forest birds in relation to burn severity in southeastern Arizona

    USGS Publications Warehouse

    Kirkpatrick, C.; Conway, C.J.; Jones, P.B.

    2006-01-01

    The frequency of wild and prescribed fires in montane forests of the southwestern United States has increased after a century of fire suppression and subsequent fuels accumulation. To assess the effects of recent fires (median time since fire = 6 yr) on the montane forest bird community, we surveyed birds in 8 Sky Island mountain ranges in southeastern Arizona, USA, and examined how the distribution (i.e., presence-absence) of 65 species and relative abundance of 16 species correlated with evidence of severe and less severe fire at >1,500 survey points. We detected associations between fire and bird presence-absence for 17% of the 65 species analyzed and between fire and bird relative abundance for 25% of the 16 species analyzed. Most species (73%) were positively associated with burned areas and displayed stronger associations (i.e., more extreme odds ratios) with survey points that had evidence of severe as opposed to less severe fire. Positive associations with severe fire were strong (>3 to 1 odds) for western wood-pewee (Contopus sordidulus) and house wren (Troglodytes aedon), and negative associations with severe fire were strong for warbling vireo (Vireo gilvus) and red-breasted nuthatch (Sitta canadensis). Although recent fires appear to have had a positive effect on the distribution and relative abundance of several montane forest bird species in the region, these species are not the open-woodland birds that we would have expected to have benefited from fire based on previous research. Nevertheless, our results confirm associations between fire and bird presence-absence and relative abundance reported previously for 7 species of birds. Our results also provide new information for Grace's warbler (Dendroica graciae) and greater pewee (C. pertinax), 2 species for which fire data were formerly lacking. Managers can use these data to make and test predictions about the effects of future fires, both severe and less severe, on montane forest birds in the

  17. Impact of the spatial laser distribution on photocathode gun operation

    NASA Astrophysics Data System (ADS)

    Zhou, Feng; Brachmann, Axel; Emma, Paul; Gilevich, Sasha; Huang, Zhirong

    2012-09-01

    It is widely believed that a drive laser with uniform temporal and spatial laser profiles is required to generate the lowest emittance beam at the photoinjector. However, for a given 3 ps smooth-Gaussian laser temporal profile, our recent simulations indicate that a truncated-Gaussian laser spatial profile produces an electron beam with smaller emittance. The simulation results are qualitatively confirmed by later analytical calculation, and also confirmed by measurements: emittance reduction of ˜25% was observed at the linac coherent light source (LCLS) injector with a truncated-Gaussian laser spatial profile at the nominal operating bunch charge of 150 pC. There was a significant secondary benefit—laser transmission through the iris for the truncated-Gaussian profile was about twice that compared to the nearly uniform distribution, which significantly loosens the laser power and quantum efficiency requirements for drive laser system and photocathode. Since February 9, 2012, the drive laser with the truncated-Gaussian spatial distribution has been used for LCLS routine user operations and the corresponding free electron laser power is at least the same as the one when using the nearly uniform spatial profile.

  18. A new spatial snow distribution in hydrological models parameterized from observed spatial variability of precipitation.

    NASA Astrophysics Data System (ADS)

    Skaugen, Thomas; Weltzien, Ingunn

    2016-04-01

    The traditional catchment hydrological model with its many free calibration parameters is not a well suited tool for prediction under conditions for which is has not been calibrated. Important tasks for hydrological modelling such as prediction in ungauged basins and assessing hydrological effects of climate change are hence not solved satisfactory. In order to reduce the number of calibration parameters in hydrological models we have introduced a new model which uses a dynamic gamma distribution as the spatial frequency distribution of snow water equivalent (SWE). The parameters are estimated from observed spatial variability of precipitation and the magnitude of accumulation and melting events and are hence not subject to calibration. The relationship between spatial mean and variance of precipitation is found to follow a pattern where decreasing temporal correlation with increasing accumulation or duration of the event leads to a levelling off or even a decrease of the spatial variance. The new model for snow distribution is implemented in the, already parameter parsimonious, DDD (Distance Distribution Dynamics) hydrological model and was tested for 71 Norwegian catchments. We compared the new snow distribution model with the current operational snow distribution model where a fixed, calibrated coefficient of variation parameterizes a log-normal model for snow distribution. Results show that the precision of runoff simulations is equal, but that the new snow distribution model better simulates snow covered area (SCA) when compared with MODIS satellite derived snow cover. In addition, SWE is simulated more realistically in that seasonal snow is melted out and the building up of "snow towers" is prevented and hence spurious trends in SWE.

  19. Spatial distribution and vertical migrations of fish larvae communities off Northwestern Iberia sampled with LHPR and Bongo nets

    NASA Astrophysics Data System (ADS)

    Garrido, Susana; Santos, A. Miguel P.; dos Santos, Antonina; Ré, Pedro

    2009-10-01

    The spatial distribution and diel vertical migration of fish larvae were studied in relation to the environmental conditions off NW Iberia during May 2002. Larvae from 23 families were identified, the most abundant were the Clupeidae, Gobiidae, Callionymidae, Blenniidae, Sparidae and Labridae. Sardina pilchardus was the most abundant species, mean concentrations 1 order of magnitude higher than the other fish larvae species. Larval horizontal distribution was mainly related to upwelling-driven circulation, resulting in an offshore increase of larval abundance while the vertical distribution was closely associated to the Western Iberia Buoyant Plume. Despite this general trend, taxon-specific relationships between the distribution of larvae and environmental variables were observed, and temperature was an important regressor explaining the distribution of most taxa. A comparison between ichthyoplankton samples collected alternatively with the LHPR and Bongo nets resulted in captures of larvae ≈1 order of magnitude higher for the LHPR, probably related to its higher towing speed. The spatial distribution and relative composition of larvae were also different for both nets, although the most frequent/abundant groups were the same. A fixed station sampled for 69-h showed diel vertical migrations performed by the larvae, with the highest larval concentrations occurring at surface layers during the night and most larvae being found in the neuston layer only during that period.

  20. Distribution, abundance, and seasonal ecology of Listronotus maculicollis (Coleoptera: Curculionidae) on golf courses in Québec, Canada.

    PubMed

    Simard, Louis; Brodeur, Jacques; Dionne, Julie

    2007-08-01

    The weevil Listronotus maculicollis Dietz (Coleoptera: Curculionidae) is a major pest of annual bluegrass, Poa annua L., on golf courses in northeastern North America. To determine the distribution, abundance, and seasonal ecology of L. maculicollis on golf courses in Québec, Canada, we sampled 19 golf courses (GC1-GC19) from different geographic and climatic conditions during 2001, 2002, and 2003. L. maculicollis was found on all golf courses except GC19, which was located in northeastern Québec. In most sites, L. maculicollis completed two generations per year. A linear regression model comparing L. maculicollis larval densities as a function of spatial coordinates revealed that L. maculicollis were more abundant in western Québec than in eastern Québec. Pearson correlations on the probability of both L. maculicollis larval and pupal presence with soil parameters indicated significant positive correlations for fine sand (larvae) and soil pH (pupae) and negative correlations for gravel.

  1. Variations in spatial and temporal distribution of Archaea in the North Sea in relation to environmental variables.

    PubMed

    Herfort, Lydie; Schouten, Stefan; Abbas, Ben; Veldhuis, Marcel J W; Coolen, Marco J L; Wuchter, Cornelia; Boon, Jan P; Herndl, Gerhard J; Sinninghe Damsté, Jaap S

    2007-12-01

    The spatial and temporal distribution of pelagic Archaea was studied in the southern North Sea by rRNA hybridization, sequencing and quantification of 16S rRNA gene and membrane lipid analyses and related to physical, chemical and biological parameters to determine the factors influencing archaeal biogeography. A clear temporal variability was observed, with marine Crenarchaeota (Group I.1a) being relatively more abundant in winter and Euryarchaeota dominating the archaeal assemblage in spring and summer. Spatial differences in the lateral distribution of Crenarchaeota were also evident. In fact, their abundance was positively correlated with the copy number of the gene encoding the alpha subunit of crenarchaeotal ammonia monooxygenase (amoA) and with concentrations of ammonia, nitrate, nitrite and phosphorus. This suggests that most Crenarchaeota in the North Sea are nitrifiers and that their distribution is determined by nutrient concentrations. However, Crenarchaeota were not abundant when larger phytoplankton (>3 microm) dominated the algal population. It is hypothesized that together with nutrient concentration, phytoplankton biomass and community structure can predict crenarchaeotal abundance in the southern North Sea. Euryarchaeotal abundance was positively correlated with chlorophyll a concentrations, but not with phytoplankton community structure. Whether this is related to the potential of Euryarchaeota to perform aerobic anoxygenic phototrophy remains to be shown, but the conspicuous seasonal distribution pattern of Crenarchaeota and Euryarchaeota suggests that they occupy a different ecological niche.

  2. Abundant Topological Outliers in Social Media Data and Their Effect on Spatial Analysis.

    PubMed

    Westerholt, Rene; Steiger, Enrico; Resch, Bernd; Zipf, Alexander

    2016-01-01

    Twitter and related social media feeds have become valuable data sources to many fields of research. Numerous researchers have thereby used social media posts for spatial analysis, since many of them contain explicit geographic locations. However, despite its widespread use within applied research, a thorough understanding of the underlying spatial characteristics of these data is still lacking. In this paper, we investigate how topological outliers influence the outcomes of spatial analyses of social media data. These outliers appear when different users contribute heterogeneous information about different phenomena simultaneously from similar locations. As a consequence, various messages representing different spatial phenomena are captured closely to each other, and are at risk to be falsely related in a spatial analysis. Our results reveal indications for corresponding spurious effects when analyzing Twitter data. Further, we show how the outliers distort the range of outcomes of spatial analysis methods. This has significant influence on the power of spatial inferential techniques, and, more generally, on the validity and interpretability of spatial analysis results. We further investigate how the issues caused by topological outliers are composed in detail. We unveil that multiple disturbing effects are acting simultaneously and that these are related to the geographic scales of the involved overlapping patterns. Our results show that at some scale configurations, the disturbances added through overlap are more severe than at others. Further, their behavior turns into a volatile and almost chaotic fluctuation when the scales of the involved patterns become too different. Overall, our results highlight the critical importance of thoroughly considering the specific characteristics of social media data when analyzing them spatially.

  3. Abundant Topological Outliers in Social Media Data and Their Effect on Spatial Analysis

    PubMed Central

    Zipf, Alexander

    2016-01-01

    Twitter and related social media feeds have become valuable data sources to many fields of research. Numerous researchers have thereby used social media posts for spatial analysis, since many of them contain explicit geographic locations. However, despite its widespread use within applied research, a thorough understanding of the underlying spatial characteristics of these data is still lacking. In this paper, we investigate how topological outliers influence the outcomes of spatial analyses of social media data. These outliers appear when different users contribute heterogeneous information about different phenomena simultaneously from similar locations. As a consequence, various messages representing different spatial phenomena are captured closely to each other, and are at risk to be falsely related in a spatial analysis. Our results reveal indications for corresponding spurious effects when analyzing Twitter data. Further, we show how the outliers distort the range of outcomes of spatial analysis methods. This has significant influence on the power of spatial inferential techniques, and, more generally, on the validity and interpretability of spatial analysis results. We further investigate how the issues caused by topological outliers are composed in detail. We unveil that multiple disturbing effects are acting simultaneously and that these are related to the geographic scales of the involved overlapping patterns. Our results show that at some scale configurations, the disturbances added through overlap are more severe than at others. Further, their behavior turns into a volatile and almost chaotic fluctuation when the scales of the involved patterns become too different. Overall, our results highlight the critical importance of thoroughly considering the specific characteristics of social media data when analyzing them spatially. PMID:27611199

  4. [Distribution and abundance of fish community in the littoral area of "Los Petenes" Biosphere Reserve, Campeche, Mexico].

    PubMed

    Muñoz-Rojas, Sandra; Ayala-Pérez, Luis Amado; Sosa-López, Atahualpa; Villalobos-Zapata, Guillermo Jorge

    2013-03-01

    "Los Petenes" Biosphere Reserve (RBLP) is a critical habitat for many aquatic and terrestrial species. It has the biggest and better conserved seagrass beds, and it represents an important habitat for food, protection and breeding of aquatic organisms, and a temporal refuge for migratory species. The objective of this study was to describe the ichthyofauna diversity in the littoral coastal area of the RBLP, to identify the ecological dominant species, and to analyze the abundance of the fish community and its temporal and spatial changes, and their relationship with some environmental variables. Monthly fish samples were obtained with the aid of trawl nets, from 24 samplings sites distributed along the reserve, between May 2009 and April 2010. The trawl net was operated 288 times and 21 795 individuals with 279.5kg of weight were collected. A total of 46 fish species grouped in 34 genera and 23 families were identified. In a spatial scale, the abundance showed the next ranges: 0.018-0.094ind./m2; 0.249-1.072 g/m2 and 9.75-19.32g/ind.; the diversity indexes obtained were: H'n=1.46-2.15, J'=0.45-0.71 and D'=2.08-3.92. In a temporal scale, the abundance and diversity ranged between: 0.026-0.066ind./m2; 0.342-0.764g/m2 and 6.49-22.98g/ind.; H'n=1.76-2.08; J'=0.52-0.64 and D'=3.07-4.18. Eleven dominant species were identified with a representation of the 94.39% in number of individuals, and 89.66% in weight of the total catch. From the total, eight species had economic or commercial importance, especially Lagodon rhomboides and Haemulon plumierii. The cluster analyses identified four fish associations; these results are discussed in order to identify relationships between habitat-species. Finally, the canonical correspondence analysis evidenced an association between H. plumierii with salinity and dissolved solids. The RBLP has high habitat diversity and its fish community has developed strategies to use all the spatial and temporal conditions and to satisfy the needs

  5. Distribution and abundance of freshwater decapods in an Atlantic rainforest catchment with a dammed future.

    PubMed

    Silva-Junior, E F; Silva-Araújo, M; Moulton, T P

    2017-03-13

    Variations in physical characteristics along the course of a river influence habitat availability which reflects in species distribution. Knowledge of ecology and diversity of lotic species is important for evaluating how river ecosystems will respond to environmental impacts. Freshwater decapods are a group of high ecological and economic importance, but the knowledge about factors influencing their distribution is scarce in Brazil. We performed a survey of decapods to describe their abundance and distribution as well as to study their relationships with stream physical variables and especially their association with different substrates types. We studied 23 sites located in 15 tributaries of Guapiaçú River, RJ, where we collected decapods in different substrates types and measured a set of physical variables. We found five decapods species, including amphidromous and non-amphidromous shrimps and crabs. Decapods were strongly associated with leaf-litter substrates and their abundance was related to a multivariate axis describing longitudinal changes in stream characteristics. We concluded that decapods occurring in the Guapiaçú catchment inhabit mainly small streams with preserved riparian forests where they find shelter and potential prey of invertebrates. The ongoing project to build a dam on the Guapiaçú River will have negative consequences to migrating shrimps and we strongly recommend that mitigating actions, such the construction of structures to allow the passage of migrating fauna, should be taken.

  6. Lowland tapir (Tapirus terrestris) distribution, activity patterns and relative abundance in the Greater Madidi-Tambopata Landscape.

    PubMed

    Wallace, Robert; Ayala, Guido; Viscarra, Maria

    2012-12-01

    Lowland tapir distribution is described in northwestern Bolivia and southeastern Peru within the Greater Madidi-Tambopata Landscape, a priority Tapir Conservation Unit, using 1255 distribution points derived from camera trapping efforts, field research and interviews with park guards from 5 national protected areas and hunters from 19 local communities. A total of 392 independent camera trapping events from 14 camera trap surveys at 11 sites demonstrated the nocturnal and crepuscular activity patterns (86%) of the lowland tapir and provide 3 indices of relative abundance for spatial and temporal comparison. Capture rates for lowland tapirs were not significantly different between camera trapping stations placed on river beaches versus those placed in the forest. Lowland tapir capture rates were significantly higher in the national protected areas of the region versus indigenous territories and unprotected portions of the landscape. Capture rates through time suggested that lowland tapir populations are recovering within the Tuichi Valley, an area currently dedicated towards ecotourism activities, following the creation (1995) and subsequent implementation (1997) of the Madidi National Park in Bolivia. Based on our distributional data and published conservative estimates of population density, we calculated that this transboundary landscape holds an overall lowland tapir population of between 14 540 and 36 351 individuals, of which at least 24.3% are under protection from national and municipal parks. As such, the Greater Madidi-Tambopata Landscape should be considered a lowland tapir population stronghold and priority conservation efforts are discussed in order to maintain this population.

  7. Distribution and abundance of nonnative fishes in streams of the western United States

    USGS Publications Warehouse

    Schade, C.B.; Bonar, Scott A.

    2005-01-01

    This report presents data from one of the largest standardized stream surveys conducted in he western United States, which shows that one of every four individual fish in streams of 12 western states are nonnative. The states surveyed included Arizona, California, Colorado, Idaho, Montana, Nevada, North Dakota, Oregon, South Dakota, Utah, Washington, and Wyoming. The most widely distributed and abundant nonnative fishes in the western USA were brook trout Salvelinus fontinalis, brown trout Salmo trutta, rainbow trout Oncorhynchus mykiss, common carp Cyprinus carpio, smallmouth bass Micropterus dolomieu, largemouth bass M. salmoides, green sunfish Lepomis cyanellus, fathead minnow Pimephales promelas, yellow perch Percaflavescens, yellow bullhead Ameiurus natalis, cutthroat trout O. clarkii, western mosquitofish Gambusia affinis, golden shiner Notemigonus crysoleucas, channel catfish Ictalurus punctatus, and red shiner Cyprinella lutrensis. The greatest abundance and distribution of nonnative fishes was in interior states, and the most common nonnatives were introduced for angling. Nonnative fishes were widespread in pristine to highly disturbed streams influenced by all types of land use practices. We present ranges in water temperature, flow, stream order, riparian cover, human disturbance, and other environmental conditions where the 10 most common introduced species were found. Of the total western U.S. stream length bearing fish, 50.1% contained nonnative fishes while 17.9% contained physical environment that was ranked highly or moderately disturbed by humans. Introduced fishes can adversely affect stream communities, and they are much more widespread in western U.S. streams than habitat destruction. The widespread distribution and high relative abundance of nonnative fishes and their documented negative effects suggest their management and control should elicit at least as much attention as habitat preservation in the protection of native western U.S. stream

  8. Iron and Titanium Abundance and Maturity Degree Distribution on the Lunar Nearside

    NASA Astrophysics Data System (ADS)

    Shkuratov, Yurij G.; Kaydash, Vadym G.; Opanasenko, Nickolaj V.

    1999-02-01

    New digital images of the lunar nearside albedos at 0.42, 0.65, 0.75, and 0.95 μm derived from telescopic data were used to map the abundance and distribution of iron, titanium, and maturity degree on the lunar nearside. Developing the approach by P. Luceyet al.(1995,Science268, 1150), a method of separating contributions of the Fe and Ti abundance and maturity degree to spectral properties of the lunar surface is presented. The main objective of the method is an analysis of the 3D correlation diagram of optical characteristics of regolith material with the aim of choosing a coordinate system providing the best correlations of these characteristics with Fe and Ti abundance (data for the Surveyor, Luna, and Apollo landing sites) and with maturity degree (laboratory measurements of lunar samples by E. Fischer and C. Pieters (e.g., 1996,J. Geophys. Res.101, 2225). To find the coordinates, a geometrical optics model of light scattering in particulate media enabling to calculate the absorption coefficient from albedo measurements is used. An analysis of the correlation diagram FeO-TiO2provides two maps characterizing optical types of the lunar nearside. In particular, the maps show that the basalts of Mare Serenitatis and Mare Tranquillitatis are not widely extended on the lunar nearside. The maturity degree, parameterIs/FeO, was also mapped. Regions withIs/FeO≤50 are young craters surrounded by ray systems, whereas the conditionIs/FeO≥70 corresponds to regions associated with Copernicus ejecta, western boundaries of Mare Tranquillitatis and Mare Serenitatis, and a portion of the south highland. The new map of FeO distribution on the lunar nearside was used to study a correlation between iron content and distribution of remanent magnetism over the lunar surface. The relationship obtained has a reverse behavior: the lower the iron content, the higher the magnetism.

  9. Local Abundance Patterns of Noctuid Moths in Olive Orchards: Life-History Traits, Distribution Type and Habitat Interactions

    PubMed Central

    Pérez-Guerrero, Sergio; Redondo, Alberto José; Yela, José Luis

    2011-01-01

    Local species abundance is related to range size, habitat characteristics, distribution type, body size, and life-history variables. In general, habitat generalists and polyphagous species are more abundant in broad geographical areas. Underlying this, local abundance may be explained from the interactions between life-history traits, chorological pattern, and the local habitat characteristics. The relationship within taxa between life-history traits, distribution area, habitat characteristics, and local abundance of the noctuid moth (Lepidoptera: Noctuidae) assemblage in an olive orchard, one of the most important agro-ecosystems in the Mediterranean basin, was analyzed. A total of 66 species were detected over three years of year-round weekly samplings using the light-trap method. The life-history traits examined and the distribution type were found to be related to the habitat-species association, but none of the biological strategies defined from the association to the different habitats were linked with abundance. In contrast to general patterns, dispersal ability and number of generations per year explained differences in abundance. The relationships were positive, with opportunistic taxa that have high mobility and several generations being locally more abundant. In addition, when the effect of migrant species was removed, the distribution type explained abundance differences, with Mediterranean taxa (whose baricenter is closer to the studied area) being more abundant. PMID:21529251

  10. Aspherical abundance distribution of ejecta from neutrino-driven core collapse supernova

    NASA Astrophysics Data System (ADS)

    Fujimoto, Shin-Ichiro; Kotake, Kei; Hashimoto, Masa-Aki; Ono, Masaomi; Ohnishi, Naofumi

    2010-08-01

    We examine explosive nucleosynthesis during a delayed neutrino-driven, supernova explosion aided by standing accretion shock instability, based on two-dimensional hydrodynamic simulations of the explosion of a 15Msolar progenitor. We find that abundance pattern of the supernova ejecta is similar to that of the solar system, for cases with high explosion energies of ~=1051 ergs. Aspherical distribution of Fe, Si, and O, which is observed in a nearby core-collapse SN remnant such as Cas A, is obtained in spite of the explosion of the non-rotating, spherical progenitor.

  11. roAp stars: surface lithium abundance distribution and magnetic field configuration

    NASA Astrophysics Data System (ADS)

    Polosukhina, N.; Shulyak, D.; Shavrina, A.; Lyashko, D.; Drake, N. A.; Glagolevski, Yu.; Kudryavtsev, D.; Smirnova, M.

    2014-08-01

    High-resolution spectra obtained with the 6m BTA telescope, Russia, and with HARPS and VLT/UVES telescopes at ESO, Chile, were used for Doppler Imaging analysis of two roAp stars, HD 12098 and HD 60435, showing strong and variable Li resonance line in their spectra. We found that Li has highly inhomogeneous distribution on the surfaces of these stars. We compared our results with previously obtained Doppler Imaging mapping of two CP2 stars, HD 83368 and HD 3980, and discuss the correlation between the position of the high Li-abundance spots and magnetic field.

  12. Distribution, abundance, and diversity patterns of the thermoacidophilic "deep-sea hydrothermal vent euryarchaeota 2".

    PubMed

    Flores, Gilberto E; Wagner, Isaac D; Liu, Yitai; Reysenbach, Anna-Louise

    2012-01-01

    Cultivation-independent studies have shown that taxa belonging to the "deep-sea hydrothermal vent euryarchaeota 2" (DHVE2) lineage are widespread at deep-sea hydrothermal vents. While this lineage appears to be a common and important member of the microbial community at vent environments, relatively little is known about their overall distribution and phylogenetic diversity. In this study, we examined the distribution, relative abundance, co-occurrence patterns, and phylogenetic diversity of cultivable thermoacidophilic DHVE2 in deposits from globally distributed vent fields. Results of quantitative polymerase chain reaction assays with primers specific for the DHVE2 and Archaea demonstrate the ubiquity of the DHVE2 at deep-sea vents and suggest that they are significant members of the archaeal communities of established vent deposit communities. Local similarity analysis of pyrosequencing data revealed that the distribution of the DHVE2 was positively correlated with 10 other Euryarchaeota phylotypes and negatively correlated with mostly Crenarchaeota phylotypes. Targeted cultivation efforts resulted in the isolation of 12 axenic strains from six different vent fields, expanding the cultivable diversity of this lineage to vents along the East Pacific Rise and Mid-Atlantic Ridge. Eleven of these isolates shared greater than 97% 16S rRNA gene sequence similarity with one another and the only described isolate of the DHVE2, Aciduliprofundum boonei T469(T). Sequencing and phylogenetic analysis of five protein-coding loci, atpA, EF-2, radA, rpoB, and secY, revealed clustering of isolates according to geographic region of isolation. Overall, this study increases our understanding of the distribution, abundance, and phylogenetic diversity of the DHVE2.

  13. Diversity, Abundance, and Distribution of nirS-Harboring Denitrifiers in Intertidal Sediments of the Yangtze Estuary.

    PubMed

    Zheng, Yanling; Hou, Lijun; Liu, Min; Gao, Juan; Yin, Guoyu; Li, Xiaofei; Deng, Fengyu; Lin, Xianbiao; Jiang, Xiaofen; Chen, Fei; Zong, Haibo; Zhou, Junliang

    2015-07-01

    Denitrification plays a critical role in nitrogen removal in estuarine and coastal ecosystems. In this study, the community composition, diversity, abundance, and distribution of cytochrome cd1-type nitrite reductase gene (nirS)-harboring denitrifiers in intertidal sediments of the Yangtze Estuary were analyzed using polymerase chain reaction (PCR)-based clone libraries and quantitative PCR techniques. Clone library analysis showed that the nirS-encoding bacterial biodiversity was significantly higher at the lower salinity sites than at the higher salinity sites. However, there was no significant seasonal difference in the nirS gene diversity between summer and winter. Phylogenetic analysis revealed that the nirS-harboring denitrifier communities at the study area had distinctive spatial heterogeneity along the estuary. At the lower salinity sites, the nirS-harboring bacterial community was co-dominated by clusters III and VII; while at the higher salinity sites, it was dominated by cluster I. Canonical correspondence analysis indicated that the community compositions of nirS-type denitrifiers were significantly correlated with salinity, ammonium, and nitrate. Quantitative PCR results showed that the nirS gene abundance was in the range of 1.01 × 10(6) to 9.00 × 10(7) copies per gram dry sediment, without significant seasonal variation. Among all the environmental factors, the nirS gene abundance was only significantly related to the change of salinity. These results can extend our current knowledge about the composition and dynamics of denitrification microbial community in the estuarine ecosystem.

  14. Lutzomyia longipalpis spatial distribution and association with environmental variables in an urban focus of visceral leishmaniasis, Misiones, Argentina.

    PubMed

    Fernández, María Soledad; Salomón, Oscar Daniel; Cavia, Regino; Perez, Adriana Alicia; Acardi, Soraya A; Guccione, José Daniel

    2010-05-01

    This study describes the spatial distribution pattern of Lu. longipalpis abundance in Posadas-Garupá, Argentina, where four cases of human Visceral Leishmaniasis had been recorded. A total of 2428 Lu. longipalpis were captured in 42% of the 305 sites sampled with CDC light traps, its abundance shows spatial autocorrelation ranging up to 590 m (semivariogram model), with six downtown 'islands' of vector highest abundance (>or=60 individuals). A significant association between Lu. longipalpis and the presence of chickens was observed (odds ratio 3.26). The best stepwise multiple regression using Generalized Linear Models explained 31% of the deviance for Lu. longipalpis abundance, including as explanatory variables: (a) negatively: households with 'lack of building material and with economic deprivation', (b) positively: surface covered by trees and bushes at 50 meters of the house, and households without electrical lighting. In conclusion, Lu. longipalpis in a recent settled focus of visceral leishmaniasis was urbanized with a highly heterogeneous spatial distribution within the cities, with the vectors concentrated in limited 'islands' of high abundance, in the downtown relatively more affluent and dense populated areas, but also more heterogeneous with patches that had higher tree coverage and poor urban services. These results once validated will contribute to the control strategy design through risk maps, in order to prioritize areas for prevention and control, and setting the appropriate scale for intervention.

  15. Abundance, distribution, and isotopic composition of particulate black carbon in the northern Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Yang, Weifeng; Guo, Laodong

    2014-11-01

    There exists increasing evidence supporting the important role of black carbon in global carbon cycles. Particulate black carbon (PBC) is allochthonous and has distinct reactivities compared to the bulk particulate organic carbon (tot-POC) in marine environments. However, the abundance, geochemical behavior of PBC and its importance in oceanic carbon budget remain poorly understood. Here we report the abundance, distribution, and stable isotopic signatures of BC derived from the chemo-thermal oxidation (CTO-375) method (BCCTO) in the Gulf of Mexico. Our results show that BCCTO abundance decreased from shelf to basin, and more than a half of riverine BCCTO could be removed over the shelf. Moreover, BCCTO is much more refractory compared to the tot-POC and has δ13C values lower than those of BC-excluded POC. These results highlight the significance of PBC in marine carbon cycles and potentially suggest the need for a new end-member term in quantifying POC sources in the ocean.

  16. Distribution and abundance of American eels in the White Oak River estuary, North Carolina

    USGS Publications Warehouse

    Hightower, J.E.; Nesnow, C.

    2006-01-01

    Apparent widespread declines in abundance of Anguilla rostrata (American eel) have reinforced the need for information regarding its life history and status. We used commercial eel pots and crab (peeler) pots to examine the distribution, condition, and abundance of American eels within the White Oak River estuary, NC, during summers of 2002-2003. Catch of American eels per overnight set was 0.35 (SE = 0.045) in 2002 and 0.49 (SE = 0.044) in 2003. There was not a significant linear relationship between catch per set and depth in 2002 (P = 0.31, depth range 0.9-3.4 m) or 2003 (P = 0.18, depth range 0.6-3.4 m). American eels from the White Oak River were in good condition, based on the slope of a length-weight relationship (3.41) compared to the median slope (3.15) from other systems. Estimates of population density from grid sampling in 2003 (300 mm and larger: 4.0-13.8 per ha) were similar to estimates for the Hudson River estuary, but substantially less than estimates from other (smaller) systems including tidal creeks within estuaries. Density estimates from coastal waters can be used with harvest records to examine whether overfishing has contributed to the recent apparent declines in American eel abundance.

  17. Macrobenthos composition, distribution and abundance within Sungai Pulai estuary, Johor, Malaysia

    NASA Astrophysics Data System (ADS)

    Shi, Guan Wan; Min, Lee Di; Ghaffar, Mazlan Abd; Ali, Masni Md; Cob, Zaidi Che

    2014-09-01

    Macrobenthos are very useful organisms for monitoring marine environmental and widely use in marine ecology research. They are able to monitor the difference phase in the recovery stage of disturbed sites by appear different species macrobenthos after the cessation of the impact. Univariate and multivariate methods were use to study the macrobenthos community within Sungai Pulai estuary, Johor, Malaysia. Five sub-samples were taken at each sampling sites by using 10 cm diameter corer. Crustaceans were the most abundant at Tanjung Adang (St. 1) and the station of non-seagrass area (St. 2) while polychaetes were the most abundant at Merambong Shoal (St. 3). Higher density of macrobenthos was found at St.3 followed by St. 1 and St. 2. The commonly used population indices such as diversity, richness, evenness and dominance were employed to determine the differences in diversity and abundance of macrobenthos. The diversity, richness and evenness index values showed slight increment from Station 1 to Station 3, while the dominance index decreasing trend from Station 1 to Station 3. A total 21 polychaete families were collected in Sungai Pulai estuary, which was dominated by the Spionidae, Capitellidae and Glyceridae. Cluster (Bray-Curtis similarities) analyses revealed that the Tanjung Adang and Merambong Shoal population were clearly separated from the station non-seagrass. For the time being factors that influence the pattern of distribution of the macrobenthos cannot be determined and subjected to further studies.

  18. Spatial Models of Abundance and Habitat Preferences of Commerson’s and Peale’s Dolphin in Southern Patagonian Waters

    PubMed Central

    Dellabianca, Natalia A.; Pierce, Graham J.; Raya Rey, Andrea; Scioscia, Gabriela; Miller, David L.; Torres, Mónica A.; Paso Viola, M. Natalia; Schiavini, Adrián C. M.

    2016-01-01

    Commerson’s dolphins (Cephalorhynchus c. commersonii) and Peale’s dolphins (Lagenorhynchus australis) are two of the most common species of cetaceans in the coastal waters of southwest South Atlantic Ocean. Both species are listed as Data Deficient by the IUCN, mainly due to the lack of information about population sizes and trends. The goal of this study was to build spatially explicit models for the abundance of both species in relation to environmental variables using data collected during eight scientific cruises along the Patagonian shelf. Spatial models were constructed using generalized additive models. In total, 88 schools (212 individuals) of Commerson’s dolphin and 134 schools (465 individuals) of Peale’s dolphin were recorded in 8,535 km surveyed. Commerson’s dolphin was found less than 60 km from shore; whereas Peale’s dolphins occurred over a wider range of distances from the coast, the number of animals sighted usually being larger near or far from the coast. Fitted models indicate overall abundances of approximately 22,000 Commerson’s dolphins and 20,000 Peale’s dolphins in the total area studied. This work provides the first large-scale abundance estimate for Peale’s dolphin in the Atlantic Ocean and an update of population size for Commerson’s dolphin. Additionally, our results contribute to baseline data on suitable habitat conditions for both species in southern Patagonia, which is essential for the implementation of adequate conservation measures. PMID:27783627

  19. Validating a spatially distributed hydrological model with soil morphology data

    NASA Astrophysics Data System (ADS)

    Doppler, T.; Honti, M.; Zihlmann, U.; Weisskopf, P.; Stamm, C.

    2014-09-01

    Spatially distributed models are popular tools in hydrology claimed to be useful to support management decisions. Despite the high spatial resolution of the computed variables, calibration and validation is often carried out only on discharge time series at specific locations due to the lack of spatially distributed reference data. Because of this restriction, the predictive power of these models, with regard to predicted spatial patterns, can usually not be judged. An example of spatial predictions in hydrology is the prediction of saturated areas in agricultural catchments. These areas can be important source areas for inputs of agrochemicals to the stream. We set up a spatially distributed model to predict saturated areas in a 1.2 km2 catchment in Switzerland with moderate topography and artificial drainage. We translated soil morphological data available from soil maps into an estimate of the duration of soil saturation in the soil horizons. This resulted in a data set with high spatial coverage on which the model predictions were validated. In general, these saturation estimates corresponded well to the measured groundwater levels. We worked with a model that would be applicable for management decisions because of its fast calculation speed and rather low data requirements. We simultaneously calibrated the model to observed groundwater levels and discharge. The model was able to reproduce the general hydrological behavior of the catchment in terms of discharge and absolute groundwater levels. However, the the groundwater level predictions were not accurate enough to be used for the prediction of saturated areas. Groundwater level dynamics were not adequately reproduced and the predicted spatial saturation patterns did not correspond to those estimated from the soil map. Our results indicate that an accurate prediction of the groundwater level dynamics of the shallow groundwater in our catchment that is subject to artificial drainage would require a model that

  20. Spatial distribution of enzyme activities in the rhizosphere

    NASA Astrophysics Data System (ADS)

    Razavi, Bahar S.; Zarebanadkouki, Mohsen; Blagodatskaya, Evgenia; Kuzyakov, Yakov

    2015-04-01

    The rhizosphere, the tiny zone of soil surrounding roots, certainly represents one of the most dynamic habitat and interfaces on Earth. Activities of enzymes produced by both plant roots and microbes are the primary biological drivers of organic matter decomposition and nutrient cycling. That is why there is an urgent need in spatially explicit methods for the determination of the rhizosphere extension and enzyme distribution. Recently, zymography as a new technique based on diffusion of enzymes through the 1 mm gel plate for analysis has been introduced (Spohn & Kuzyakov, 2013). We developed the zymography technique to visualize the enzyme activities with a higher spatial resolution. For the first time, we aimed at quantitative imaging of enzyme activities as a function of distance from the root tip and the root surface in the soil. We visualized the two dimensional distribution of the activity of three enzymes: β-glucosidase, phosphatase and leucine amino peptidase in the rhizosphere of maize using fluorogenically labelled substrates. Spatial-resolution of fluorescent images was improved by direct application of a substrate saturated membrane to the soil-root system. The newly-developed direct zymography visualized heterogeneity of enzyme activities along the roots. The activity of all enzymes was the highest at the apical parts of individual roots. Across the roots, the enzyme activities were higher at immediate vicinity of the roots (1.5 mm) and gradually decreased towards the bulk soil. Spatial patterns of enzyme activities as a function of distance from the root surface were enzyme specific, with highest extension for phosphatase. We conclude that improved zymography is promising in situ technique to analyze, visualize and quantify spatial distribution of enzyme activities in the rhizosphere hotspots. References Spohn, M., Kuzyakov, Y., 2013. Phosphorus mineralization can be driven by microbial need for carbon. Soil Biology & Biochemistry 61: 69-75

  1. Spatial distribution and species composition of small pelagic fishes in the Gulf of California.

    PubMed

    Lanz, Edgar; Nevárez-Martínez, Manuel O; López-Martínez, Juana; Dworak, Juan A

    2008-06-01

    Traditional regionalization methods in fisheries based on provinces or major fishing areas, includes large and arbitrary grids in which basic statistics or inferences on distribution or abundance are made. We describe a method for regionalization and analysis of fishing activities for small pelagic fisheries in the Gulf of California based on spatial patterns of landing and catch data in a Geographic Information System (GIS) environment. A fisheries database from logbooks with spatial attributes from October 2002 to June 2007 was analyzed. Landings and catching data were transformed to a Weighted Region Index (WRI) by using fuzzy logic operators. The WRI revealed fishing action centers characterized by areas with the highest WRI values, and a hierarchy for the relative importance of the regions was established. Guaymas, Desemboque de Caborca, Isla Patos, and Bahia San Rafael they were the most prominent ones. An analysis of the relative frequency of species composition showed that the Pacific sardine had an over 80 % abundance in the midriff islands, and remained as the most important in the upper gulf regions, while in the central part of the gulf, relative abundances of Pacific sardine and Northern anchovy were more balanced. Relative abundance of mackerel was significantly larger around Isla Patos than in any other place. Guaymas had the largest relative composition of Northern anchovy and the lowest values for Pacific sardine. Desemboque de Caborca showed the largest homogeneity in species relative composition. It is important to highlight that this results come from in situ data, while the results previously reported come from landing statistics by port. Therefore, the present method acknowledges the spatial differences of species by regions, additional to the traditional time series analysis.

  2. Stellar bars and the spatial distribution of infrared luminosity

    NASA Technical Reports Server (NTRS)

    Devereux, Nicholas

    1987-01-01

    Ground-based 10 micron observations of the central region of over 100 infrared luminous galaxies are presented. A first order estimate of the spatial distribution of infrared emission in galaxies is obtained through a combination of ground-based and Infrared Astronomy Satellite (IRAS) data. The galaxies are nearby and primarily noninteracting, permitting an unbiased investigation of correlations with Hubble type. Approximately 40% of the early-type barred galaxies in this sample are associated with enhanced luminosity in the central (approximately 1 kpc diameter) region. The underlying luminosity source is attributed to both Seyfert and star formation activity. Late-type spirals are different in that the spatial distribution of infrared emission and the infrared luminoisty are not strongly dependent on barred morphology.

  3. Spread of pedigree versus genetic ancestry in spatially distributed populations.

    PubMed

    Kelleher, J; Etheridge, A M; Véber, A; Barton, N H

    2016-04-01

    Ancestral processes are fundamental to modern population genetics and spatial structure has been the subject of intense interest for many years. Despite this interest, almost nothing is known about the distribution of the locations of pedigree or genetic ancestors. Using both spatially continuous and stepping-stone models, we show that the distribution of pedigree ancestors approaches a travelling wave, for which we develop two alternative approximations. The speed and width of the wave are sensitive to the local details of the model. After a short time, genetic ancestors spread far more slowly than pedigree ancestors, ultimately diffusing out with radius ∼ t rather than spreading at constant speed. In contrast to the wave of pedigree ancestors, the spread of genetic ancestry is insensitive to the local details of the models.

  4. [Composition, abundance and distribution of populations of commercially important gastropods in La Guajira, Colombian Caribbean].

    PubMed

    Nieto-Bernal, Ramón; Luis, Chasqui; Rodriguez, Angélica María; Castro, Erick; Gil-Agudelo, Diego L

    2013-06-01

    In the continental Colombian Caribbean the conch resource exploitation and the status of snails populations has been poorly studied, which are reflected in the lack of fisheries management. This study assesses composition, population density and distribution of the gastropods species that make conch resource in La Guajira region. Underwater visual censuses for snails were performed between September-November 2009 in 145100x4m (400m2) transects, spanning a total area of 56920m2 between Riohacha and Cabo de la Vela. The study was complemented with the evaluation of composition, abundance and size of gastropods conch found in the discarded-by-fishermen shell mounds in 13 beaches. In October 2010 another 40 transects were evaluated (16 000 m2) from the Southern of Riohacha to the Camarones village (La Guajira). We found a total of 9911 snails belonging to 12 species, the most abundant being Strombus pugilis with 8 912 individuals and an average density of 1 538.4 +/- 3 662.6 ind./ha, followed by Vasum muricatum with 374 individuals and an average density of 51.8 +/- 91.2 ind./ha. Calculating the importance value index (IVI) for both living organisms as the empty shells on beaches, shows that Turbinella angulata is the most used species by artisanal fishermen in the region. Cassis madagascariensis and Cassis tuberosa are also important snail resources in the region (as suggested by the number of empty shells found in beaches), but its densities were low. Strombus gigas, with only three living organisms found in the area, presented the lowest abundance ever found in the Colombian Caribbean (0.52 +/- 3.6 ind./ha), showing that queen conch population in La Guajira cannot support commercial exploitation. The abundance of discarded S. gigas shells on beaches suggests resource exploitation in the recent past. Results remarks the urgency of implementing management plans for snail fisheries in the region.

  5. The abundance and seasonal distribution of Culex mosquitoes in Iowa during 1995-97.

    PubMed

    Lee, J H; Rowley, W A

    2000-12-01

    The abundance and seasonal distribution of Culex mosquitoes were monitored by measuring oviposition activity during the summers of 1995, 1996, and 1997. Five species of culicine mosquitoes laid egg rafts in ovitraps. Egg rafts of 4 Culex species-Cx. restuans (54.98%), Cx. pipiens (25.41%), Cx. salinarius (12.18%), and Cx. tarsalis (0.14%)-constituted more than 92% of the total egg rafts collected. Culiseta inornata (0.1%) was the only other species to lay viable egg rafts in the ovitraps. A small percentage (7.19%) of egg rafts did not hatch; thus identification was not possible. Compared with New Jersey light trap data in a nearby area, the abundance of Cx. tarsalis and Cs. inornata was markedly underestimated with ovitraps. These data may also reflect differences in the specific location of the 2 trap sites rather than attractiveness of ovitraps for Cx. tarsalis and Cs. inornata. In general, Cx. restuans oviposition activity began in late May, and it was the dominant Culex species through June. After July 1, the number of egg rafts laid by Cx. restuans decreased continually until the end of the summer. Culex pipiens and Cx. salinarius oviposition began in early June and increased gradually during the summer. Over the course of a summer, there were about twice as many Cx. pipiens as there were Cx. salinarius. A crossover in the number of Cx. pipiens and Cx. restuans egg rafts occurred in late July or early August, depending on the year. By late August each year, Cx. pipiens was the most abundant species. At this time, Cx. restuans and Cx. salinarius populations were similar, but each was about half of the Cx. pipiens population. Differences in the abundance of all 3 species could not be explained by changes in ambient temperature (both minimum and maximum) or relative humidity, either within or among years.

  6. Distribution and Abundance of Hopanoid Producers in Low-Oxygen Environments of the Eastern Pacific Ocean.

    PubMed

    Kharbush, Jenan J; Kejriwal, Kanchi; Aluwihare, Lihini I

    2016-02-01

    Hopanoids are bacterial membrane lipid biomarker molecules that feature prominently in the molecular fossil record. In the modern marine water column, recent reports implicate bacteria inhabiting low-oxygen environments as important sources of hopanoids to marine sediments. However, the preliminary biogeography reported by recent studies and the environmental conditions governing such distributions can only be confirmed when the numerical abundance of these organisms is known with more certainty. In this study, we employ two different approaches to examine the quantitative significance of phylogenetically distinct hopanoid producers in low-oxygen environments. First, we develop a novel quantitative PCR (qPCR) assay for the squalene hopene cyclase (sqhC) gene, targeting a subset of hopanoid producers previously identified to be important in the eastern North Pacific Ocean. The results represent the first quantitative gene abundance data of any kind for hopanoid producers in the marine water column and show that these putative alphaproteobacterial hopanoid producers are rare, comprising at most 0.2 % of the total bacterial community in our samples. Second, a complementary analysis of existing low-oxygen metagenomic datasets further examined the generality of the qPCR observation. We find that the dominant sqhC sequences in these metagenomic datasets are associated with phyla such as Nitrospinae rather than Proteobacteria, consistent with the qPCR finding that alphaproteobacterial hopanoid producers are not very abundant in low-oxygen environments. In fact, positive correlations between sqhC gene abundance and environmental parameters in these samples identify nitrite availability as a potentially important factor in the ecology of hopanoid producers that dominate low-oxygen environments.

  7. Spatially varying color distributions for interactive multilabel segmentation.

    PubMed

    Nieuwenhuis, Claudia; Cremers, Daniel

    2013-05-01

    We propose a method for interactive multilabel segmentation which explicitly takes into account the spatial variation of color distributions. To this end, we estimate a joint distribution over color and spatial location using a generalized Parzen density estimator applied to each user scribble. In this way, we obtain a likelihood for observing certain color values at a spatial coordinate. This likelihood is then incorporated in a Bayesian MAP estimation approach to multiregion segmentation which in turn is optimized using recently developed convex relaxation techniques. These guarantee global optimality for the two-region case (foreground/background) and solutions of bounded optimality for the multiregion case. We show results on the GrabCut benchmark, the recently published Graz benchmark, and on the Berkeley segmentation database which exceed previous approaches such as GrabCut, the Random Walker, Santner's approach, TV-Seg, and interactive graph cuts in accuracy. Our results demonstrate that taking into account the spatial variation of color models leads to drastic improvements for interactive image segmentation.

  8. Waterfowl distribution and abundance during spring migration in Southern Oregon and Northeastern California

    USGS Publications Warehouse

    Fleskes, J.P.; Yee, J.L.

    2007-01-01

    We used aerial surveys to study abundance and distribution of waterfowl (ducks, geese, swans, and coots) during spring in southern Oregon and northeastern California (SONEC). Total waterfowl-use days in SONEC during the 119-day, 5 January-3 May, spring period was similar during 2002 (127,977,700) and 2003 (128,076,200) and averaged 1,075,900 birds per day (bpd); these estimates should be adjusted upward 4%-10% to account for areas not surveyed. Waterfowl abundance peaked in mid-March in both years: 2,095,700 in 2002 and 1,681,700 in 2003. Northern Pintail (Anas acuta) was the most abundant species in both years, accounting for 25.6% of the 2002 and 24.5% of the 2003 waterfowl-use days. Pintail abundance peaked during the 13 March survey at 689,300 in 2002 and 532,100 in 2003. All other dabbling ducks accounted for 27.6% and 28.6%, diving ducks for 13.5% and 9.2%, geese for 24.6% and 29.3%, swans for 2.8% and 1.0%, and coots for 5.8% and 6.4% of the spring waterfowl-use days in SONEC during 2002 and 2003, respectively. Although use days changed little for total waterfowl (+0.08%) and dabbling ducks (-0.1%), diving duck use was lower (-32%), and goose use days were greater (+19%) in 2003 than in 2002. Distribution was similar in both years, with the most waterfowl use in the Lower (66%) and Upper (14%) Klamath subregions; 2%-6% occurred in each of the other subregions. Although the Lower Klamath subregion received the greatest overall waterfowl use, distribution among subregions varied among species and surveys, and all subregions were important during some part of the spring for 1 or more species. Peak spring abundance in SONEC during 2002 and 2003 averaged 50.3% of the midwinter abundance in California (all survey regions) and southern Oregon (69-3 survey region) for all waterfowl, 46.1% for dabbling ducks, 62.4% for diving ducks, 68.8% for geese, 109.4% for swans, and 43.8% for coots. Each spring, 75% of all waterfowl use in SONEC occurred on federal, state, or

  9. Wildlife distribution and abundance on the Utah oil shale tracts 1975-1984

    SciTech Connect

    Grant, C.V.

    1986-07-01

    Distribution and abundance of 215 amphibians, reptiles, birds, and mammals were monitored for 10 years on Utah's Oil Shale Tracts using line transects, mist netting, and live trapping. Wildlife monitoring was conducted in four major vegetation types and during all seasons to establish a quantitative baseline for use in impact identification during oil shale mining. Habitat preferences were established for many species in cold desert vegetation of two types of desert shrub, and juniper and riparian woodlands. Seasonal, annual, and habitat distribution of each class demonstrated a variety of adaptive responses to environmental variables. The most important environmental variables, that is, those factors resulting in a predictable change in wildlife populations, were, in descending order: weather, food resource, shelter, and competition. 31 references, 14 figures, 10 tables.

  10. Distribution and abundance of fungi in the soils of Taylor Valley, Antarctica

    USGS Publications Warehouse

    Connell, L.; Redman, R.; Craig, S.; Rodriguez, R.

    2006-01-01

    The occurrence and distribution of culturable fungi in Taylor Valley, Antarctica was assessed in terms of soil habitat. Soil transects throughout the valley revealed differential habitat utilization between filamentous and non-filamentous (yeast and yeast-like) fungi. In addition, there were significant differences in species distribution patterns with respect to soil pH, moisture, distance from marine coastline, carbon, chlorophyll a, salinity, elevation and solar inputs. Filamentous fungal abundance is most closely associated with habitats having higher pH, and soil moistures. These close associations were not found with yeast and yeast-like fungi demonstrating that yeast and yeast-like fungi utilize a broader range of habitat. An intensive survey of the Victoria Land is necessary to gain a better understanding of their role in soil functioning and nutrient cycling processes. ?? 2006 Elsevier Ltd. All rights reserved.

  11. The abundance properties of nearby late-type galaxies. II. The relation between abundance distributions and surface brightness profiles

    SciTech Connect

    Pilyugin, L. S.; Grebel, E. K.; Zinchenko, I. A.; Kniazev, A. Y. E-mail: grebel@ari.uni-heidelberg.de E-mail: akniazev@saao.ac.za

    2014-12-01

    The relations between oxygen abundance and disk surface brightness (OH–SB relation) in the infrared W1 band are examined for nearby late-type galaxies. The oxygen abundances were presented in Paper I. The photometric characteristics of the disks are inferred here using photometric maps from the literature through bulge-disk decomposition. We find evidence that the OH–SB relation is not unique but depends on the galactocentric distance r (taken as a fraction of the optical radius R{sub 25}) and on the properties of a galaxy: the disk scale length h and the morphological T-type. We suggest a general, four-dimensional OH–SB relation with the values r, h, and T as parameters. The parametric OH–SB relation reproduces the observed data better than a simple, one-parameter relation; the deviations resulting when using our parametric relation are smaller by a factor of ∼1.4 than that of the simple relation. The influence of the parameters on the OH–SB relation varies with galactocentric distance. The influence of the T-type on the OH–SB relation is negligible at the centers of galaxies and increases with galactocentric distance. In contrast, the influence of the disk scale length on the OH–SB relation is at a maximum at the centers of galaxies and decreases with galactocentric distance, disappearing at the optical edges of galaxies. Two-dimensional relations can be used to reproduce the observed data at the optical edges of the disks and at the centers of the disks. The disk scale length should be used as a second parameter in the OH–SB relation at the center of the disk while the morphological T-type should be used as a second parameter in the relation at optical edge of the disk. The relations between oxygen abundance and disk surface brightness in the optical B and infrared K bands at the center of the disk and at optical edge of the disk are also considered. The general properties of the abundance–surface brightness relations are similar for the

  12. Spatial and Temporal Patterns of Global Onshore Wind Speed Distribution

    SciTech Connect

    Zhou, Yuyu; Smith, Steven J.

    2013-09-09

    Wind power, a renewable energy source, can play an important role in electrical energy generation. Information regarding wind energy potential is important both for energy related modeling and for decision-making in the policy community. While wind speed datasets with high spatial and temporal resolution are often ultimately used for detailed planning, simpler assumptions are often used in analysis work. An accurate representation of the wind speed frequency distribution is needed in order to properly characterize wind energy potential. Using a power density method, this study estimated global variation in wind parameters as fitted to a Weibull density function using NCEP/CFSR reanalysis data. The estimated Weibull distribution performs well in fitting the time series wind speed data at the global level according to R2, root mean square error, and power density error. The spatial, decadal, and seasonal patterns of wind speed distribution were then evaluated. We also analyzed the potential error in wind power estimation when a commonly assumed Rayleigh distribution (Weibull k = 2) is used. We find that the assumption of the same Weibull parameter across large regions can result in substantial errors. While large-scale wind speed data is often presented in the form of average wind speeds, these results highlight the need to also provide information on the wind speed distribution.

  13. An approach to analyzing environmental drivers to spatial variations in annual distribution of periphytic protozoa in coastal ecosystems.

    PubMed

    Xu, Guangjian; Xu, Henglong

    2016-03-15

    The environmental drivers to the spatial variation in annual distribution were studied based on an annual dataset of periphytic protozoa using multivariate approaches. Samples were monthly collected at four stations within a pollution gradient in coastal waters of the Yellow Sea, northern China during a 1-year period. The second-stage (2STAGE) analyses showed that the internal patterns of the annual distribution were changed along the pollution gradient in terms of abundance. The dominant species represented different succession dynamics among four sampling stations during a 1-year cycle. Best matching analysis demonstrated that the spatial variations in annual distribution of the protozoa were significantly correlated with ammonium nitrogen (NH4-N), alone or in combination with salinity and dissolved oxygen (DO). Based on the results, we suggest that the nutrients, salinity and DO may be the main drivers to shape the spatial variations in annual distribution of periphytic protozoa.

  14. Nuclear signature effect on spatial distribution of molecular harmonic in the presence of spatial inhomogeneous field

    NASA Astrophysics Data System (ADS)

    Feng, Liqiang; Li, Wenliang

    2017-01-01

    Spatial distribution of the molecular harmonic spectra from \\text{H}\\text{2}+ in the presence of inhomogeneous field has been theoretically investigated. It shows that (i) the harmonic intensities from the negative-H nucleus play the dominating role in harmonic emission spectra. (ii) Through the investigations of the nuclear signature effect on the spatial distribution of the molecular harmonic spectra, the differences of the harmonic intensities between the negative-H nucleus and the positive-H nucleus can be enhanced and reduced with the introduction of the higher vibrational state and the heavy nucleus (i.e. \\text{D}2+ ), respectively. The time-frequency analyses of the harmonic spectra, the time-dependent wave function and the electron localization have been shown to explain the harmonic spatial distribution and the electron motion. (iii) Due to the plasmon-resonance-enhancement near the metallic nanostructure, the harmonic cutoff can be remarkably enhanced as the spatial position of the inhomogeneous field moving away from the gap center. The ionization probabilities have been shown to explain the harmonic cutoff extension.

  15. Intertidal macroalgae and macroinvertebrates: Seasonal and spatial abundance patterns along an estuarine gradient

    NASA Astrophysics Data System (ADS)

    Hardwick-Witman, Morgan N.; Mathieson, Arthur C.

    1983-02-01

    Quantitative sampling of the dominant intertidal epibiota was conducted seasonally along an estuarine gradient within the Great Bay Estuary System, New Hampshire, U.S.A. The abundance and zonation of the dominant macroorganisms varied with distance into the estuary. Replacement of marine by estuarine species occurred, and overall abundance and species richness decreased along the estuarine gradient. Zonation patterns within the inner estuary were primarily allied with substrata. Maximum abundance of invertebrates occurred in the mid-intertidal zone where a dense fucoid canopy provided habitat heterogeneity. Densities of epibiotic organisms decreased toward low water, especially in the inner estuary where hard substratum was limiting. Settlement blocks, introduced into the low intertidal zone, were dominated by barnacles and fucoid algae; after 16 months, the species composition on the settlement blocks resembled the adjacent community. Semibalanus balanoides settled in the spring, while Fucus vesiculosus var. spiralis exhibited low but constant settlement. Despite the physical rigors of the estuarine environment, only Semibalanus balanoides, Ilyanassa obsoleta and Spartina alterniflora showed significant seasonal changes in density. Thus, there are predictable and persistent epibiotic species assemblages within the intertidal zone of the Great Bay Estuary System.

  16. Temporal variations in the abundance and composition of biofilm communities colonizing drinking water distribution pipes.

    PubMed

    Kelly, John J; Minalt, Nicole; Culotti, Alessandro; Pryor, Marsha; Packman, Aaron

    2014-01-01

    Pipes that transport drinking water through municipal drinking water distribution systems (DWDS) are challenging habitats for microorganisms. Distribution networks are dark, oligotrophic and contain disinfectants; yet microbes frequently form biofilms attached to interior surfaces of DWDS pipes. Relatively little is known about the species composition and ecology of these biofilms due to challenges associated with sample acquisition from actual DWDS. We report the analysis of biofilms from five pipe samples collected from the same region of a DWDS in Florida, USA, over an 18 month period between February 2011 and August 2012. The bacterial abundance and composition of biofilm communities within the pipes were analyzed by heterotrophic plate counts and tag pyrosequencing of 16S rRNA genes, respectively. Bacterial numbers varied significantly based on sampling date and were positively correlated with water temperature and the concentration of nitrate. However, there was no significant relationship between the concentration of disinfectant in the drinking water (monochloramine) and the abundance of bacteria within the biofilms. Pyrosequencing analysis identified a total of 677 operational taxonomic units (OTUs) (3% distance) within the biofilms but indicated that community diversity was low and varied between sampling dates. Biofilms were dominated by a few taxa, specifically Methylomonas, Acinetobacter, Mycobacterium, and Xanthomonadaceae, and the dominant taxa within the biofilms varied dramatically between sampling times. The drinking water characteristics most strongly correlated with bacterial community composition were concentrations of nitrate, ammonium, total chlorine and monochloramine, as well as alkalinity and hardness. Biofilms from the sampling date with the highest nitrate concentration were the most abundant and diverse and were dominated by Acinetobacter.

  17. Temporal Variations in the Abundance and Composition of Biofilm Communities Colonizing Drinking Water Distribution Pipes

    PubMed Central

    Kelly, John J.; Minalt, Nicole; Culotti, Alessandro; Pryor, Marsha; Packman, Aaron

    2014-01-01

    Pipes that transport drinking water through municipal drinking water distribution systems (DWDS) are challenging habitats for microorganisms. Distribution networks are dark, oligotrophic and contain disinfectants; yet microbes frequently form biofilms attached to interior surfaces of DWDS pipes. Relatively little is known about the species composition and ecology of these biofilms due to challenges associated with sample acquisition from actual DWDS. We report the analysis of biofilms from five pipe samples collected from the same region of a DWDS in Florida, USA, over an 18 month period between February 2011 and August 2012. The bacterial abundance and composition of biofilm communities within the pipes were analyzed by heterotrophic plate counts and tag pyrosequencing of 16S rRNA genes, respectively. Bacterial numbers varied significantly based on sampling date and were positively correlated with water temperature and the concentration of nitrate. However, there was no significant relationship between the concentration of disinfectant in the drinking water (monochloramine) and the abundance of bacteria within the biofilms. Pyrosequencing analysis identified a total of 677 operational taxonomic units (OTUs) (3% distance) within the biofilms but indicated that community diversity was low and varied between sampling dates. Biofilms were dominated by a few taxa, specifically Methylomonas, Acinetobacter, Mycobacterium, and Xanthomonadaceae, and the dominant taxa within the biofilms varied dramatically between sampling times. The drinking water characteristics most strongly correlated with bacterial community composition were concentrations of nitrate, ammonium, total chlorine and monochloramine, as well as alkalinity and hardness. Biofilms from the sampling date with the highest nitrate concentration were the most abundant and diverse and were dominated by Acinetobacter. PMID:24858562

  18. Fire, grazing history, lichen abundance, and winter distribution of caribou in Alaska's taiga

    USGS Publications Warehouse

    Collins, W.B.; Dale, B.W.; Adams, L.G.; McElwain, D.E.; Joly, Kyle

    2011-01-01

    In the early 1990s the Nelchina Caribou (Rangifer tarandus) Herd (NCH) began a dramatic shift to its current winter range, migrating at least an additional 100 km beyond its historic range. We evaluated the impacts of fire and grazing history on lichen abundance and subsequent use and distribution by the NCH. Historic (prior to 1990) and current (2002) winter ranges of the NCH had similar vascular vegetation, lichen cover (P = 0.491), and fire histories (P = 0.535), but the former range had significantly less forage lichen biomass as a result of grazing by caribou. Biomass of forage lichens was twice as great overall (P = 0.031) and 4 times greater in caribou selected sites on the current range than in the historic range, greatly increasing availability to caribou. Caribou on the current range selected for stands with >20% lichen cover (P < 0.001), greater than 1,250 kg/ha (P < 0.001) forage lichen biomass and stands older than 80 yr postfire (P < 0.001). After fires, forage lichen cover and biomass seldom recovered sufficiently to attract caribou grazing until after ???60 yr, and, as a group, primary forage lichen species did not reach maximum abundance until 180 yr postfire. Recovery following overgrazing can occur much more quickly because lichen cover, albeit mostly fragments, and organic substrates remain present. Our results provide benchmarks for wildlife managers assessing condition of caribou winter range and predicting effects of fires on lichen abundance and caribou distribution. Of our measurements of cover and biomass by species, densities and heights of trees, elevation, slope and aspect, only percentage cover by Cladonia amaurocraea, Cladina rangiferina, Flavocetraria cuculata, and lowbush cranberry (Vaccinium vitis-idaea) were necessary for predicting caribou use of winter range. ?? 2011 The Wildlife Society.

  19. The distribution and abundance of Enterobius vermicularis in a South Indian fishing community.

    PubMed

    Haswell-Elkins, M R; Elkins, D B; Manjula, K; Michael, E; Anderson, R M

    1987-10-01

    The distribution and abundance of Enterobius vermicularis in a fishing community in South India, as determined by counting worms expelled following mass anthelmintic chemotherapy, was examined in samples of patients stratified by age, sex and family grouping. The results of a worm expulsion study in January 1984 are compared with those of a second expulsion programme in November 1984, following an 11-month period of reinfection. The prevalence of Enterobius infection was consistently high in all age groups of both males and females. A comparison of the overall prevalence and intensity of infection in the January and November surveys revealed significant increases in both the percent infected and the mean number of worms harboured in November relative to the initial level. No significant trends in the intensity of Enterobius according to host age or sex were detected in either survey. The frequency distribution of Enterobius was found to be highly aggregated in the population as a whole and within age groups. At both sampling dates, the most heavily infected 25% of the community harboured over 90% of the total pinworms recovered. There was a significant pattern within most age groups for individuals to re-acquire worm burdens of a similar magnitude to their initial pre-treatment burdens. Heavy infections were found to be associated with household. A selective or targetted approach to treatment of heavily infected individuals or households is likely to be an efficient means of reducing parasite abundance on a community-wide basis. It must be stressed, however, that treatment must be applied at frequent intervals in order to achieve a long-term reduction in pinworm abundance and to avoid the possibility of increasing the intensity of infection, as was observed in this community.

  20. Sampling design for spatially distributed hydrogeologic and environmental processes

    USGS Publications Warehouse

    Christakos, G.; Olea, R.A.

    1992-01-01

    A methodology for the design of sampling networks over space is proposed. The methodology is based on spatial random field representations of nonhomogeneous natural processes, and on optimal spatial estimation techniques. One of the most important results of random field theory for physical sciences is its rationalization of correlations in spatial variability of natural processes. This correlation is extremely important both for interpreting spatially distributed observations and for predictive performance. The extent of site sampling and the types of data to be collected will depend on the relationship of subsurface variability to predictive uncertainty. While hypothesis formulation and initial identification of spatial variability characteristics are based on scientific understanding (such as knowledge of the physics of the underlying phenomena, geological interpretations, intuition and experience), the support offered by field data is statistically modelled. This model is not limited by the geometric nature of sampling and covers a wide range in subsurface uncertainties. A factorization scheme of the sampling error variance is derived, which possesses certain atttactive properties allowing significant savings in computations. By means of this scheme, a practical sampling design procedure providing suitable indices of the sampling error variance is established. These indices can be used by way of multiobjective decision criteria to obtain the best sampling strategy. Neither the actual implementation of the in-situ sampling nor the solution of the large spatial estimation systems of equations are necessary. The required values of the accuracy parameters involved in the network design are derived using reference charts (readily available for various combinations of data configurations and spatial variability parameters) and certain simple yet accurate analytical formulas. Insight is gained by applying the proposed sampling procedure to realistic examples related

  1. Spatial distribution of Serengeti wildebeest in relation to resources

    USGS Publications Warehouse

    Wilmshurst, J.F.; Fryxell, J.M.; Farm, Brian P.; Sinclair, A.R.E.; Henschel, C.P.

    1999-01-01

    We investigated the spatial distribution of radio-marked wildebeest (Connochaetes taurinus) in the Serengeti ecosystem in relation to the distribution of their food resources, comparing patterns in the wet and dry seasons and at local and landscape spatial scales. A mechanistic model of ruminant energy optimization predicted that wildebeest should maximize energy intake on swards 3 cm high and maintain energy balance on swards between 3 and 10 cm high. At the ecosystem scale, wildebeest preferred short and intermediate-height grass of moderate greenness during both the wet and dry seasons. This was consistent with the model prediction which suggests that large-scale movements by wildebeest are motivated, at least partially, by an energy-maximizing strategy. At the local scale, however, wildebeest showed spatial selectivity only on the basis of grass greenness, not on grass height. This differed from model expectations and may have resulted from wildebeest exploiting ephemeral green flushes of grass caused by localized rainfall in their movement radius. According to these results, the influence of other nutritional or behavioural factors on wildebeest distributions is not rejected, yet they suggest the potentially important role of an energy intake maximizing strategy on movement patterns. Our findings show that wildebeest movements are broadly similar to those of other large herbivores that migrate in response to resource gradients.

  2. Socioeconomic and Ecological Factors Influencing Aedes aegypti Prevalence, Abundance, and Distribution in Dhaka, Bangladesh.

    PubMed

    Dhar-Chowdhury, Parnali; Haque, C Emdad; Lindsay, Robbin; Hossain, Shakhawat

    2016-06-01

    This study examined household risk factors and prevalence, abundance, and distribution of immature Aedes aegypti and Aedes albopictus, and their association with socioeconomic and ecological factors at urban zonal and household levels in the city of Dhaka, Bangladesh. During the 2011 monsoon, 826 households in 12 randomly selected administrative wards were surveyed for vector mosquitoes. Results revealed that the abundance and distribution of immature Ae. aegypti and Ae. albopictus, and pupae-per-person indices did not vary significantly among the zones with varied socioeconomic status. Of 35 different types of identified wet containers, 30 were infested, and among the 23 pupae-positive container types, nine were defined as the "most productive" for pupae including: disposable plastic containers (12.2% of 550), sealable plastic barrels (12.0%), tires (10.4%), abandoned plastic buckets (9.6%), flower tub and trays (8.5%), refrigerator trays (6.5%), plastic bottles (6.4%), clay pots (4.9%), and water tanks (1.6%). When the function of the containers was assessed, ornamental, discarded, and household repairing and reconstruction-related container categories were found significantly associated with the number of pupae in the households. The purpose of storing water and income variables were significant predictors of possession of containers that were infested by vector mosquitoes.

  3. Insights into the distribution and abundance of the ubiquitous candidatus Saccharibacteria phylum following tag pyrosequencing.

    PubMed

    Ferrari, Belinda; Winsley, Tristrom; Ji, Mukan; Neilan, Brett

    2014-02-04

    The phylum candidatus Saccharibacteria formerly known as Candidate Division TM7 is a highly ubiquitous phylum with 16S rRNA gene sequences reported in soils, sediments, wastewater and animals, as well as a host of clinical environments. Here, the application of two taxon-specific primers on environmental and human-associated samples using bar-coded tag pyrosequencing revealed two new clades for this phylum to exist and we propose that the division consists of 2 monophyletic and 2 polyphyletic clades. Investigation into TM7 ecology revealed that a high proportion (58%) of phylotypes were sample specific, few were widely distributed and of those most widely distributed all belonged to subdivision 3. Additionally, 50% of the most relatively abundant phylotypes observed were also subdivision 3 members. Community analysis showed that despite the presence of a high proportion of unique phylotypes, specific groups of samples still harbor similar TM7 communities with samples clustering together. The lack of relatively abundant phylotypes from subdivisions 1, 2 and 4 and the presence of very few cosmopolitan members' highlights not only the site specific nature of this phylum but provides insight into why the majority of studies into TM7 have been biased towards subdivision 3.

  4. Distribution, abundance, and habitat affinities of the Coastal Plain Swamp Sparrow

    USGS Publications Warehouse

    Beadell, J.; Greenberg, R.; Droege, S.; Royle, J. Andrew

    2003-01-01

    We examined the distribution and abundance of the Coastal Plain Swamp Sparrow (Melospiza georgiana nigrescens) at previously occupied sites and points within potential habitat. We found Swamp Sparrows throughout their formerly documented range except in southern Chesapeake Bay. Swamp Sparrows were most common in the Mullica River region of New Jersey where we detected individuals at 78% of systematically chosen points with a mean count of 4.1 birds/point. The percentages of points with positive detections in. the regions of Delaware River (39%), eastern Delaware Bay (23%), western Delaware Bay (34%), and Tuckahoe River (31%) were lower. The mean count of birds/point was between 0.4 and 0.6 in these regions. A higher resolution Poisson model of relative abundance suggested that the greatest concentrations of Swamp Sparrows occurred not only in the Mullica River area but also along northwestern Delaware Bay. Regression analysis of Swamp Sparrow counts and habitat features identified shrubs (Iva frutescens and Baccharis halimifolia) as a key habitat component. By applying density estimates generated by DISTANCE (Thomas et al. 1998) to the approximate area of potential shrub habitat along Delaware Bay, we estimated that the core population of Coastal Plain Swamp Sparrows was less than 28,000 pairs. We recommend that the Coastal Plain Swamp Sparrow be listed as a subspecies of concern by state and local governments because of its relatively small population size, restricted distribution in the mid-Atlantic region, and narrow habitat requirements.

  5. Insights into the distribution and abundance of the ubiquitous Candidatus Saccharibacteria phylum following tag pyrosequencing

    PubMed Central

    Ferrari, Belinda; Winsley, Tristrom; Ji, Mukan; Neilan, Brett

    2014-01-01

    The phylum candidatus Saccharibacteria formerly known as Candidate Division TM7 is a highly ubiquitous phylum with 16S rRNA gene sequences reported in soils, sediments, wastewater and animals, as well as a host of clinical environments. Here, the application of two taxon-specific primers on environmental and human-associated samples using bar-coded tag pyrosequencing revealed two new clades for this phylum to exist and we propose that the division consists of 2 monophyletic and 2 polyphyletic clades. Investigation into TM7 ecology revealed that a high proportion (58%) of phylotypes were sample specific, few were widely distributed and of those most widely distributed all belonged to subdivision 3. Additionally, 50% of the most relatively abundant phylotypes observed were also subdivision 3 members. Community analysis showed that despite the presence of a high proportion of unique phylotypes, specific groups of samples still harbor similar TM7 communities with samples clustering together. The lack of relatively abundant phylotypes from subdivisions 1, 2 and 4 and the presence of very few cosmopolitan members' highlights not only the site specific nature of this phylum but provides insight into why the majority of studies into TM7 have been biased towards subdivision 3. PMID:24492458

  6. Socioeconomic and Ecological Factors Influencing Aedes aegypti Prevalence, Abundance, and Distribution in Dhaka, Bangladesh

    PubMed Central

    Dhar-Chowdhury, Parnali; Haque, C. Emdad; Lindsay, Robbin; Hossain, Shakhawat

    2016-01-01

    This study examined household risk factors and prevalence, abundance, and distribution of immature Aedes aegypti and Aedes albopictus, and their association with socioeconomic and ecological factors at urban zonal and household levels in the city of Dhaka, Bangladesh. During the 2011 monsoon, 826 households in 12 randomly selected administrative wards were surveyed for vector mosquitoes. Results revealed that the abundance and distribution of immature Ae. aegypti and Ae. albopictus, and pupae-per-person indices did not vary significantly among the zones with varied socioeconomic status. Of 35 different types of identified wet containers, 30 were infested, and among the 23 pupae-positive container types, nine were defined as the “most productive” for pupae including: disposable plastic containers (12.2% of 550), sealable plastic barrels (12.0%), tires (10.4%), abandoned plastic buckets (9.6%), flower tub and trays (8.5%), refrigerator trays (6.5%), plastic bottles (6.4%), clay pots (4.9%), and water tanks (1.6%). When the function of the containers was assessed, ornamental, discarded, and household repairing and reconstruction-related container categories were found significantly associated with the number of pupae in the households. The purpose of storing water and income variables were significant predictors of possession of containers that were infested by vector mosquitoes. PMID:27022149

  7. Spatial uncertainty analysis: Propagation of interpolation errors in spatially distributed models

    USGS Publications Warehouse

    Phillips, D.L.; Marks, D.G.

    1996-01-01

    In simulation modelling, it is desirable to quantify model uncertainties and provide not only point estimates for output variables but confidence intervals as well. Spatially distributed physical and ecological process models are becoming widely used, with runs being made over a grid of points that represent the landscape. This requires input values at each grid point, which often have to be interpolated from irregularly scattered measurement sites, e.g., weather stations. Interpolation introduces spatially varying errors which propagate through the model We extended established uncertainty analysis methods to a spatial domain for quantifying spatial patterns of input variable interpolation errors and how they propagate through a model to affect the uncertainty of the model output. We applied this to a model of potential evapotranspiration (PET) as a demonstration. We modelled PET for three time periods in 1990 as a function of temperature, humidity, and wind on a 10-km grid across the U.S. portion of the Columbia River Basin. Temperature, humidity, and wind speed were interpolated using kriging from 700- 1000 supporting data points. Kriging standard deviations (SD) were used to quantify the spatially varying interpolation uncertainties. For each of 5693 grid points, 100 Monte Carlo simulations were done, using the kriged values of temperature, humidity, and wind, plus random error terms determined by the kriging SDs and the correlations of interpolation errors among the three variables. For the spring season example, kriging SDs averaged 2.6??C for temperature, 8.7% for relative humidity, and 0.38 m s-1 for wind. The resultant PET estimates had coefficients of variation (CVs) ranging from 14% to 27% for the 10-km grid cells. Maps of PET means and CVs showed the spatial patterns of PET with a measure of its uncertainty due to interpolation of the input variables. This methodology should be applicable to a variety of spatially distributed models using interpolated

  8. Climatic controls on the global distribution, abundance, and species richness of mangrove forests

    USGS Publications Warehouse

    Osland, Michael J.; Feher, Laura; Griffith, Kereen; Cavanaugh, Kyle C.; Enwright, Nicholas M.; Day, Richard H.; Stagg, Camille L.; Krauss, Ken W.; Howard, Rebecca J.; Grace, James B.; Rogers, Kerrylee

    2017-01-01

    Mangrove forests are highly productive tidal saline wetland ecosystems found along sheltered tropical and subtropical coasts. Ecologists have long assumed that climatic drivers (i.e., temperature and rainfall regimes) govern the global distribution, structure, and function of mangrove forests. However, data constraints have hindered the quantification of direct climate-mangrove linkages in many parts of the world. Recently, the quality and availability of global-scale climate and mangrove data have been improving. Here, we used these data to better understand the influence of air temperature and rainfall regimes upon the distribution, abundance, and species richness of mangrove forests. Although our analyses identify global-scale relationships and thresholds, we show that the influence of climatic drivers is best characterized via regional range limit-specific analyses. We quantified climatic controls across targeted gradients in temperature and/or rainfall within 14 mangrove distributional range limits. Climatic thresholds for mangrove presence, abundance, and species richness differed among the 14 studied range limits. We identified minimum temperature-based thresholds for range limits in eastern North America, eastern Australia, New Zealand, eastern Asia, eastern South America, and southeast Africa. We identified rainfall-based thresholds for range limits in western North America, western Gulf of Mexico, western South America, western Australia, Middle East, northwest Africa, east central Africa, and west central Africa. Our results show that in certain range limits (e.g., eastern North America, western Gulf of Mexico, eastern Asia), winter air temperature extremes play an especially important role. We conclude that rainfall and temperature regimes are both important in western North America, western Gulf of Mexico, and western Australia. With climate change, alterations in temperature and rainfall regimes will affect the global distribution, abundance, and

  9. Pickup Ion Velocity Distributions at Titan: Effects of Spatial Gradients

    NASA Technical Reports Server (NTRS)

    Hartle, R. E.; Sittler, E. C.

    2004-01-01

    The principle source of pickup ions at Titan is its neutral exosphere, extending well above the ionopause into the magnetosphere of Saturn or the solar wind, depending on the moon's orbital position. Thermal and nonthermal processes in the thermosphere generate the distribution of neutral atoms and molecules in the exosphere. The combination of these processes and the range of mass numbers, 1 to over 28, contribute to an exospheric source structure that produces pickup ions with gyroradii that are much larger or smaller than the corresponding scale heights of their neutral sources. The resulting phase space distributions are dependent on the spatial structure of the exosphere as well as that of the magnetic field and background plasma. When the pickup ion gyroradius is less than the source gas scale height, the pickup ion velocity distribution is characterized by a sharp cutoff near the maximum speed, which is twice that of the ambient plasma times the sine of the angle between the magnetic field and the flow velocity. This was the case for pickup H(sup +) ions identified during the Voyager 1 flyby. In contrast, as the gyroradius becomes much larger than the scale height, the peak of the velocity distribution in the source region recedes from the maximum speed. Iri addition, the amplitude of the distribution near the maximum speed decreases. These more beam like distributions of heavy ions were not observed from Voyager 1 , but should be observable by more sensitive instruments on future spacecraft, including Cassini. The finite gyroradius effects in the pickup ion velocity distributions are studied by including in the analysis the possible range of spatial structures in the neutral exosphere and background plasma.

  10. Spatial distribution and ecological niches of non-breeding planktivorous petrels

    PubMed Central

    Navarro, Joan; Cardador, Laura; Brown, Ruth; Phillips, Richard A.

    2015-01-01

    According to niche theory, mechanisms exist that allow co-existence of organisms that would otherwise compete for the same prey and other resources. How seabirds cope with potential competition during the non-breeding period is poorly documented, particularly for small species. Here we investigate for the first time the potential role of spatial, environmental (habitat) and trophic (isotopic) segregation as niche-partitioning mechanisms during the non-breeding season for four species of highly abundant, zooplanktivorous seabird that breed sympatrically in the Southern Ocean. Spatial segregation was found to be the main partitioning mechanism; even for the two sibling species of diving petrel, which spent the non-breeding period in overlapping areas, there was evidence from distribution and stable isotope ratios for differences in habitat use and diving depth. PMID:26165162

  11. Perceptions of species abundance, distribution, and diversity: Lessons from four decades of sampling on a government-managed reserve

    USGS Publications Warehouse

    Gibbons, J. Whitfield; Burke, Vincent J.; Lovich, Jefferey E.; Semlitsch, Raymond D.; Tuberville, Tracey D.; Bodie, J. Russell; Greene, Judith L.; Niewiarowski, Peter H.; Whiteman, Howard H.; Scott, David E.; Pechmann, Joseph H. K.; Harrison, Christopher R.; Bennett, Stephen H.; Krenz, John D.; Mills, Mark S.; Buhlmann, Kurt A.; Lee, John R.; Seigel, Richard A.; Tucker, Anton D.; Mills, Tony M.; Lamb, Trip; Dorcas, Michael E.; Congdon, Justin D.; Smith, Michael H.; Nelson, David H.; Dietsch, M. Barbara; Hanlin, Hugh G.; Ott, Jeannine A.; Karapatakis, Deno J.

    1997-01-01

    We examined data relative to species abundance, distribution, and diversity patterns of reptiles and amphibians to determine how perceptions change over time and with level of sampling effort. Location data were compiled on more than one million individual captures or observations of 98 species during a 44-year study period on the US Department of Energy’s (DOE) Savannah River Site National Environmental Research Park (SRS-NERP) in South Carolina. We suggest that perceptions of herpetofaunal species diversity are strongly dependent on level of effort and that land management decisions based on short-term data bases for some faunal groups could result in serious errors in environmental management. We provide evidence that acquiring information on biodiversity distribution patterns is compatible with multiyear spatially extensive research programs and also provide a perspective of what might be achieved if long-term, coordinated research efforts were instituted nationwide. To conduct biotic surveys on government-managed lands, we recommend revisions in the methods used by government agencies to acquire and report biodiversity data. We suggest that government and industry employees engaged in biodiversity survey efforts develop proficiency in field identification for one or more major taxonomic groups and be encouraged to measure the status of populations quantitatively with consistent and reliable methodologies. We also suggest that widespread academic cooperation in the dissemination of information on regional patterns of biodiversity could result by establishment of a peer-reviewed, scientifically rigorous journal concerned with status and trends of the biota of the United States.

  12. The global distribution, abundance, and stability of SO2 on Io

    USGS Publications Warehouse

    McEwen, A.S.; Johnson, T.V.; Matson, D.L.; Soderblom, L.A.

    1988-01-01

    Sulfur dioxide distribution and abundances, bolometric hemispheric albedos, and passive surface temperatures on Io are modeled and mapped globally from Voyager multispectral mosaics, Earth-based spectra, and photometric descriptions. Photometric models indicate global average values for regolith porosity of 75-95% and macroscopic roughness with a mean slope angle of ~30??. Abundances of SO2 suggested by observations at uv-visible wavelengths and at 4.08 ??m are partially reconciled by intimate-mixing models; 30-50% SO2 coverage of the integral disk is indicated. Three major spectral end members, with continuous mixing, are recognized from the Voyager multispectral mosaics; one of these end members is identified as SO2. Intimate-mixing models with the three spectal end members are used to produce abundance maps for the optical surface; ~30% of Io's total optical surface consists of SO2. The SO2 is concentrated in the bright equatorial band and is relatively deficient in the region of Pele-type volcanic reuptions (long 240??-360??) and the polar regions. Temperatures are computed to vary over a 40??K range, at the same illumination angle, according to variations in surface bolometric hemispheric albedo. The brightest (and locally coldest) areas correspond to areas rich in SO2 and are concentrated in an equatorial band (??30?? lat), but many small cold patches occur elsewhere. These cold patches have radiative equilibrium temperatures ???120??K at the subsolar point, resulting in SO2 saturation vapor pressures ???10-8 bar. Midlatitude areas and the region of Pele-type plume eruptions are generally warmer (due to lower albedos). These results for surface temperatures and SO2 abundances and distribution support the regional coldtrapping model for the surface and atmospheric SO2 presented by F.P. Fanale, W.B. Banerdt, L.S. Elson, T.V. Johnson, and R.W. Zurek (1982, In Satellites of Jupiter (D. Morrison, Ed.), pp. 756-781, Univ. of Arizona Press, Tucson), although the

  13. Asymmetric competition causes multimodal size distributions in spatially structured populations.

    PubMed

    Velázquez, Jorge; Allen, Robert B; Coomes, David A; Eichhorn, Markus P

    2016-01-27

    Plant sizes within populations often exhibit multimodal distributions, even when all individuals are the same age and have experienced identical conditions. To establish the causes of this, we created an individual-based model simulating the growth of trees in a spatially explicit framework, which was parametrized using data from a long-term study of forest stands in New Zealand. First, we demonstrate that asymmetric resource competition is a necessary condition for the formation of multimodal size distributions within cohorts. By contrast, the legacy of small-scale clustering during recruitment is transient and quickly overwhelmed by density-dependent mortality. Complex multi-layered size distributions are generated when established individuals are restricted in the spatial domain within which they can capture resources. The number of modes reveals the effective number of direct competitors, while the separation and spread of modes are influenced by distances among established individuals. Asymmetric competition within local neighbourhoods can therefore generate a range of complex size distributions within even-aged cohorts.

  14. Asymmetric competition causes multimodal size distributions in spatially structured populations

    PubMed Central

    Velázquez, Jorge; Allen, Robert B.; Coomes, David A.; Eichhorn, Markus P.

    2016-01-01

    Plant sizes within populations often exhibit multimodal distributions, even when all individuals are the same age and have experienced identical conditions. To establish the causes of this, we created an individual-based model simulating the growth of trees in a spatially explicit framework, which was parametrized using data from a long-term study of forest stands in New Zealand. First, we demonstrate that asymmetric resource competition is a necessary condition for the formation of multimodal size distributions within cohorts. By contrast, the legacy of small-scale clustering during recruitment is transient and quickly overwhelmed by density-dependent mortality. Complex multi-layered size distributions are generated when established individuals are restricted in the spatial domain within which they can capture resources. The number of modes reveals the effective number of direct competitors, while the separation and spread of modes are influenced by distances among established individuals. Asymmetric competition within local neighbourhoods can therefore generate a range of complex size distributions within even-aged cohorts. PMID:26817778

  15. Spatial distribution of Madeira Island Laurisilva endemic spiders (Arachnida: Araneae)

    PubMed Central

    2014-01-01

    Abstract Madeira island presents a unique spider diversity with a high number of endemic species, many of which are still poorly known. A recent biodiversity survey on the terrestrial arthropods of the native forest, Laurisilva, provided a large set of standardized samples from various patches throughout the island. Out of the fifty two species recorded, approximately 33.3% are Madeiran endemics, many of which had not been collected since their original description. Two new species to science are reported – Ceratinopsis n. sp. and Theridion n. sp. – and the first records of Poeciloneta variegata (Blackwall, 1841) and Tetragnatha intermedia Kulczynski, 1891 are reported for the first time for Madeira island. Considerations on species richness and abundance from different Laurisilva locations are presented, together with distribution maps for endemic species. These results contribute to a better understanding of spider diversity patterns and endemic species distribution in the native forest of Madeira island. PMID:24855443

  16. Spatial distribution patterns in macrobenthos along a latitudinal transect at the deep-sea observatory HAUSGARTEN

    NASA Astrophysics Data System (ADS)

    Vedenin, A.; Budaeva, N.; Mokievsky, V.; Pantke, C.; Soltwedel, T.; Gebruk, A.

    2016-08-01

    Spatial distribution patterns of benthic organisms are the focus of various faunal marine studies. However, data on horizontal and bathymetric distribution of the deep-sea macrofauna are still scattered and incomplete, and conclusions are usually based on a low number of samples. Spatial distribution of benthic macrofauna was studied based on the material collected during the RV Polarstern expedition ARK-XXVII/2 in July 2012. Eleven stations along the latitudinal transect at the LTER (Long-Term Ecological Research) observatory HAUSGARTEN in the Fram Strait were taken at depths of about 2.3-2.7 km. Macrofauna was obtained using the box corer. A half core (0.125 m2) was taken at each station and four subcores (0.03 m2) were taken from each core and used for the quantitative analysis. The results suggest that a single, highly variable community with the dominance of polychaetes Galathowenia fragilis and Myriochele heeri inhabits the studied area. No latitudinal gradient in the community was revealed. The prevalence of a spatial variability in the community structure at a scale larger than the full sample per station (0.125 m2) was detected. Several abundant taxa (e.g. the polychaetes Prionospio sp. and Galathowenia fragilis) tend to form patches within a full sample.

  17. Spatial distribution of flood risk and quality of spatial management: case study in Odra Valley, Poland.

    PubMed

    Rucinska, Dorota

    2015-02-01

    This article presents methodological solutions aimed at presenting the spatial distribution of flood risk and quality of spatial management (land use), indicating both those areas used reasonably and those requiring modification. The purpose was to identify key risk areas and risk-free areas from the point of view of human security and activity on the floodplains, based on the examples of the vicinities of Wroclaw and Raciborz in the Odra Valley, Poland. Due to recent climate change, Poland has suffered the effects of severe flooding (e.g., 1997, 2001, 2010). The analyses conducted were motivated by the European Parliament and Council's recently implemented Directive 2007/60/WE, as well as by the demand for studies for local spatial planning. The analysis indicates that reasonably developed areas do not account for the majority of those studied, making up 36% of the Wroclaw area and 15% of the Raciborz area.

  18. Testing methods for using high-resolution satellite imagery to monitor polar bear abundance and distribution

    USGS Publications Warehouse

    LaRue, Michelle A.; Stapleton, Seth P.; Porter, Claire; Atkinson, Stephen N.; Atwood, Todd C.; Dyck, Markus; Lecomte, Nicolas

    2015-01-01

    High-resolution satellite imagery is a promising tool for providing coarse information about polar species abundance and distribution, but current applications are limited. With polar bears (Ursus maritimus), the technique has only proven effective on landscapes with little topographic relief that are devoid of snow and ice, and time-consuming manual review of imagery is required to identify bears. Here, we evaluated mechanisms to further develop methods for satellite imagery by examining data from Rowley Island, Canada. We attempted to automate and expedite detection via a supervised spectral classification and image differencing to expedite image review. We also assessed what proportion of a region should be sampled to obtain reliable estimates of density and abundance. Although the spectral signature of polar bears differed from nontarget objects, these differences were insufficient to yield useful results via a supervised classification process. Conversely, automated image differencing—or subtracting one image from another—correctly identified nearly 90% of polar bear locations. This technique, however, also yielded false positives, suggesting that manual review will still be required to confirm polar bear locations. On Rowley Island, bear distribution approximated a Poisson distribution across a range of plot sizes, and resampling suggests that sampling >50% of the site facilitates reliable estimation of density (CV <15%). Satellite imagery may be an effective monitoring tool in certain areas, but large-scale applications remain limited because of the challenges in automation and the limited environments in which the method can be effectively applied. Improvements in resolution may expand opportunities for its future uses.

  19. Distribution and Abundance of Necrophagous Flies (Diptera: Calliphoridae and Sarcophagidae) in Maranhão, Northeastern Brazil

    PubMed Central

    Pereira de Sousa, José Roberto; Carvalho-Filho, Fernando da Silva; Esposito, Maria Cristina

    2015-01-01

    This study aimed at surveying the local calliphorid and sarcophagid species in Maranhão State (Brazil) to determine their distribution and abundance, as well as the distribution of exotic Chrysomya species. In total, 18,128 calliphorid specimens were collected, distributed in 7 genera and 14 species. The species Hemilucilia semidiaphana (Rondani, 1850) and Paralucilia paraensis (Mello, 1969) were new state records. Chrysomya albiceps (Wiedemann, 1819) and Cochliomyia macellaria (F., 1775) were the most abundant species, and the exotic species of Chrysomya together contributed more than 50% of total blow fly abundance. The abundance distribution of the calliphorid community conformed to a log series model, characterized by a steep curve that reflects an assemblage with a high degree of dominance. For the Sarcophagidae, a total of 14,810 specimens were collected and distributed in 15 genera, 11 subgenera, and 52 species. Tricharaea (Sarcophagula) occidua (F., 1794) and Peckia (Sarcodexia) lambens (Wiedemann, 1830) were the most abundant species. The abundance distribution of the species followed a log normal model, with a gentler slope, consistent with a more uniform community. The cumulative species curve for the sarcophagids did not reach the asymptote. Forty-three sarcophagid species were new state records and 22 were new records for the Brazilian northeast, which emphasizes the need for a continued survey in this region. PMID:26078304

  20. Distribution and Abundance of Necrophagous Flies (Diptera: Calliphoridae and Sarcophagidae) in Maranhão, Northeastern Brazil.

    PubMed

    de Sousa, José Roberto Pereira; Carvalho-Filho, Fernando da Silva; Esposito, Maria Cristina

    2015-01-01

    This study aimed at surveying the local calliphorid and sarcophagid species in Maranhão State (Brazil) to determine their distribution and abundance, as well as the distribution of exotic Chrysomya species. In total, 18,128 calliphorid specimens were collected, distributed in 7 genera and 14 species. The species Hemilucilia semidiaphana (Rondani, 1850) and Paralucilia paraensis (Mello, 1969) were new state records. Chrysomya albiceps (Wiedemann, 1819) and Cochliomyia macellaria (F., 1775) were the most abundant species, and the exotic species of Chrysomya together contributed more than 50% of total blow fly abundance. The abundance distribution of the calliphorid community conformed to a log series model, characterized by a steep curve that reflects an assemblage with a high degree of dominance. For the Sarcophagidae, a total of 14,810 specimens were collected and distributed in 15 genera, 11 subgenera, and 52 species. Tricharaea (Sarcophagula) occidua (F., 1794) and Peckia (Sarcodexia) lambens (Wiedemann, 1830) were the most abundant species. The abundance distribution of the species followed a log normal model, with a gentler slope, consistent with a more uniform community. The cumulative species curve for the sarcophagids did not reach the asymptote. Forty-three sarcophagid species were new state records and 22 were new records for the Brazilian northeast, which emphasizes the need for a continued survey in this region.

  1. Directional spatial frequency analysis of lipid distribution in atherosclerotic plaque

    NASA Astrophysics Data System (ADS)

    Korn, Clyde; Reese, Eric; Shi, Lingyan; Alfano, Robert; Russell, Stewart

    2016-04-01

    Atherosclerosis is characterized by the growth of fibrous plaques due to the retention of cholesterol and lipids within the artery wall, which can lead to vessel occlusion and cardiac events. One way to evaluate arterial disease is to quantify the amount of lipid present in these plaques, since a higher disease burden is characterized by a higher concentration of lipid. Although therapeutic stimulation of reverse cholesterol transport to reduce cholesterol deposits in plaque has not produced significant results, this may be due to current image analysis methods which use averaging techniques to calculate the total amount of lipid in the plaque without regard to spatial distribution, thereby discarding information that may have significance in marking response to therapy. Here we use Directional Fourier Spatial Frequency (DFSF) analysis to generate a characteristic spatial frequency spectrum for atherosclerotic plaques from C57 Black 6 mice both treated and untreated with a cholesterol scavenging nanoparticle. We then use the Cauchy product of these spectra to classify the images with a support vector machine (SVM). Our results indicate that treated plaque can be distinguished from untreated plaque using this method, where no difference is seen using the spatial averaging method. This work has the potential to increase the effectiveness of current in-vivo methods of plaque detection that also use averaging methods, such as laser speckle imaging and Raman spectroscopy.

  2. Abundance and distribution of dimethylsulfoniopropionate degradation genes and the corresponding bacterial community structure at dimethyl sulfide hot spots in the tropical and subtropical pacific ocean.

    PubMed

    Cui, Yingshun; Suzuki, Shotaro; Omori, Yuko; Wong, Shu-Kuan; Ijichi, Minoru; Kaneko, Ryo; Kameyama, Sohiko; Tanimoto, Hiroshi; Hamasaki, Koji

    2015-06-15

    Dimethylsulfoniopropionate (DMSP) is mainly produced by marine phytoplankton but is released into the microbial food web and degraded by marine bacteria to dimethyl sulfide (DMS) and other products. To reveal the abundance and distribution of bacterial DMSP degradation genes and the corresponding bacterial communities in relation to DMS and DMSP concentrations in seawater, we collected surface seawater samples from DMS hot spot sites during a cruise across the Pacific Ocean. We analyzed the genes encoding DMSP lyase (dddP) and DMSP demethylase (dmdA), which are responsible for the transformation of DMSP to DMS and DMSP assimilation, respectively. The averaged abundance (±standard deviation) of these DMSP degradation genes relative to that of the 16S rRNA genes was 33% ± 12%. The abundances of these genes showed large spatial variations. dddP genes showed more variation in abundances than dmdA genes. Multidimensional analysis based on the abundances of DMSP degradation genes and environmental factors revealed that the distribution pattern of these genes was influenced by chlorophyll a concentrations and temperatures. dddP genes, dmdA subclade C/2 genes, and dmdA subclade D genes exhibited significant correlations with the marine Roseobacter clade, SAR11 subgroup Ib, and SAR11 subgroup Ia, respectively. SAR11 subgroups Ia and Ib, which possessed dmdA genes, were suggested to be the main potential DMSP consumers. The Roseobacter clade members possessing dddP genes in oligotrophic subtropical regions were possible DMS producers. These results suggest that DMSP degradation genes are abundant and widely distributed in the surface seawater and that the marine bacteria possessing these genes influence the degradation of DMSP and regulate the emissions of DMS in subtropical gyres of the Pacific Ocean.

  3. Abundance and Distribution of Dimethylsulfoniopropionate Degradation Genes and the Corresponding Bacterial Community Structure at Dimethyl Sulfide Hot Spots in the Tropical and Subtropical Pacific Ocean

    PubMed Central

    Suzuki, Shotaro; Omori, Yuko; Wong, Shu-Kuan; Ijichi, Minoru; Kaneko, Ryo; Kameyama, Sohiko; Tanimoto, Hiroshi; Hamasaki, Koji

    2015-01-01

    Dimethylsulfoniopropionate (DMSP) is mainly produced by marine phytoplankton but is released into the microbial food web and degraded by marine bacteria to dimethyl sulfide (DMS) and other products. To reveal the abundance and distribution of bacterial DMSP degradation genes and the corresponding bacterial communities in relation to DMS and DMSP concentrations in seawater, we collected surface seawater samples from DMS hot spot sites during a cruise across the Pacific Ocean. We analyzed the genes encoding DMSP lyase (dddP) and DMSP demethylase (dmdA), which are responsible for the transformation of DMSP to DMS and DMSP assimilation, respectively. The averaged abundance (±standard deviation) of these DMSP degradation genes relative to that of the 16S rRNA genes was 33% ± 12%. The abundances of these genes showed large spatial variations. dddP genes showed more variation in abundances than dmdA genes. Multidimensional analysis based on the abundances of DMSP degradation genes and environmental factors revealed that the distribution pattern of these genes was influenced by chlorophyll a concentrations and temperatures. dddP genes, dmdA subclade C/2 genes, and dmdA subclade D genes exhibited significant correlations with the marine Roseobacter clade, SAR11 subgroup Ib, and SAR11 subgroup Ia, respectively. SAR11 subgroups Ia and Ib, which possessed dmdA genes, were suggested to be the main potential DMSP consumers. The Roseobacter clade members possessing dddP genes in oligotrophic subtropical regions were possible DMS producers. These results suggest that DMSP degradation genes are abundant and widely distributed in the surface seawater and that the marine bacteria possessing these genes influence the degradation of DMSP and regulate the emissions of DMS in subtropical gyres of the Pacific Ocean. PMID:25862229

  4. Probabilistic geobiological classification using elemental abundance distributions and lossless image compression in fossils, meteorites, and microorganisms

    NASA Astrophysics Data System (ADS)

    Storrie-Lombardi, Michael C.; Hoover, Richard B.

    2005-09-01

    Last year at this symposium we introduced a strategy for the automated detection of fossils during robotic missions to Mars using both structural and chemical signatures. The strategy employs a measure derived from information theory, lossless compression of photographic images, to estimate the relative complexity of a putative fossil compared to the rock matrix. Following target selection unsupervised multifactor cluster analysis of elemental abundance distributions provides an initial classification of the data. This autonomous classification is then confirmed using a non-linear stochastic neural network to produce a Bayesian estimate of classification accuracy. We have now employed this strategy to explore extant and fossil cyanobacteria from a variety of extreme terrestrial environments and microfossils and abiotic microstructures found in-situ in freshly fractured internal surfaces of carbonaceous meteorite. Elemental abundances (C, N, O, Na, Mg, Al, Si, P, S, Cl, K, Ca, Fe) obtained for both extant and fossil cyanobacteria produce signatures distinguishing them from meteorite targets and from one another. Fossil cyanobacteria exhibit significant loss of C, N, O, P, and Ca and increases in Al, Si, S, and Fe relative to extant organisms. Orgueil structures exhibit decreased abundances for C, N, Na, P, Cl, K, and Ca; and increases in Mg, S, and Fe relative to extant cyanobacteria. Fossil cyanobacteria are distinguished from Orgueil samples by relative increases in Al, Si, and Fe; and by diminished O and Mg. Compression indices verify that variations in random and redundant textural patterns between perceived forms and the background matrix contribute significantly to morphological visual identification. The results provide a quantitative probabilistic methodology for discriminating putatitive fossils from the surrounding rock matrix and from extant organisms using both structural and chemical information. The techniques described appear applicable to the

  5. Clues to the Metallicity Distribution in the Galactic Bulge: Abundances in OGLE-2007-BLG-349S

    NASA Astrophysics Data System (ADS)

    Cohen, Judith G.; Huang, Wenjin; Udalski, A.; Gould, Andrew; Johnson, Jennifer A.

    2008-08-01

    We present an abundance analysis based on high-dispersion and high signal-to-noise ratio Keck spectra of a very highly microlensed Galactic bulge dwarf, OGLE-2007-BLG-349S, with Teff ~ 5400 K. The amplification at the time the spectra were taken ranged from 350 to 450. This bulge star is highly enhanced in metallicity with [Fe/H ] = + 0.51 +/- 0.09 dex. The abundance ratios for the 28 species of 26 elements for which features could be detected in the spectra are almost all solar. In particular, there is no evidence for enhancement of any of the α-elements, including O and Mg. We conclude that the high [Fe/H] seen in this star, when combined with the equally high [Fe/H] derived in previous detailed abundance analysis of two other Galactic bulge dwarfs, both also highly magnified by microlensing, implies that the median metallicity in the Galactic bulge is very high. We thus infer that many previous estimates of the metallicity distribution in the Galactic bulge have substantially underestimated the mean Fe metallicity there due to sample bias, and suggest a candidate mechanism for such. If our conjecture proves valid, it may be necessary to update the calibrations for the algorithms used by many groups to interpret spectra and broadband photometry of the integrated light of very metal-rich old stellar populations, including luminous elliptical galaxies. Based in part on observations obtained at the W. M. Keck Observatory, which is operated jointly by the California Institute of Technology, the University of California, and the National Aeronautics and Space Administration.

  6. Influence of spatial temperature distribution on high accuracy interferometric metrology

    NASA Astrophysics Data System (ADS)

    Gu, Yongqiang; Miao, Erlong; Yan, Feng; Zhang, Jian; Yang, Huaijiang

    2010-10-01

    We calculate the influence of temperature change on the refractive index of air, establish a model of air temperature distribution and analyze the effect of different temperature distribution on the high accuracy interferometric metrology. First, a revised Edlen formula is employed to acquire the relation between temperature and refractive index of air, followed by introducing the fixed temperature gradient distribution among the spatial grid within the optical cavity between the reference flat and the test flat of the Fizeau interferometer, accompanied by a temperature change random function within each grid. Finally, all the rays through the air layer with different incident angles are traced by Matlab program in order to obtain the final output position, angle and OPD for each ray. The influence of different temperature distribution and the length of the optical cavity in on the testing accuracy can be analyzed through the RMS value that results from repeatable rays tracing. As a result, the horizontal distribution (vertical to optical axis) has a large effect on the testing accuracy. Thus, to realize the high accuracy figure metrology, the horizontal distribution of temperature must be rigorously controlled as well as to shorten the length of the optical cavity to a large extent. The results from our simulation are of great significant for the accuracy analysis of interferometric testing and the research of manufacturing a interferometer.

  7. LogCauchy, log-sech and lognormal distributions of species abundances in forest communities

    USGS Publications Warehouse

    Yin, Z.-Y.; Peng, S.-L.; Ren, H.; Guo, Q.; Chen, Z.-H.

    2005-01-01

    Species-abundance (SA) pattern is one of the most fundamental aspects of biological community structure, providing important information regarding species richness, species-area relation and succession. To better describe the SA distribution (SAD) in a community, based on the widely used lognormal (LN) distribution model with exp(-x2) roll-off on Preston's octave scale, this study proposed two additional models, logCauchy (LC) and log-sech (LS), respectively with roll-offs of simple x-2 and e-x. The estimation of the theoretical total number of species in the whole community, S*, including very rare species not yet collected in sample, was derived from the left-truncation of each distribution. We fitted these three models by Levenberg-Marquardt nonlinear regression and measured the model fit to the data using coefficient of determination of regression, parameters' t-test and distribution's Kolmogorov-Smirnov (KS) test. Examining the SA data from six forest communities (five in lower subtropics and one in tropics), we found that: (1) on a log scale, all three models that are bell-shaped and left-truncated statistically adequately fitted the observed SADs, and the LC and LS did better than the LN; (2) from each model and for each community the S* values estimated by the integral and summation methods were almost equal, allowing us to estimate S* using a simple integral formula and to estimate its asymptotic confidence internals by regression of a transformed model containing it; (3) following the order of LC, LS, and LN, the fitted distributions became lower in the peak, less concave in the side, and shorter in the tail, and overall the LC tended to overestimate, the LN tended to underestimate, while the LS was intermediate but slightly tended to underestimate, the observed SADs (particularly the number of common species in the right tail); (4) the six communities had some similar structural properties such as following similar distribution models, having a common

  8. Microbial distribution and abundance in the digestive system of five shipworm species (Bivalvia: Teredinidae).

    PubMed

    Betcher, Meghan A; Fung, Jennifer M; Han, Andrew W; O'Connor, Roberta; Seronay, Romell; Concepcion, Gisela P; Distel, Daniel L; Haygood, Margo G

    2012-01-01

    Marine bivalves of the family Teredinidae (shipworms) are voracious consumers of wood in marine environments. In several shipworm species, dense communities of intracellular bacterial endosymbionts have been observed within specialized cells (bacteriocytes) of the gills (ctenidia). These bacteria are proposed to contribute to digestion of wood by the host. While the microbes of shipworm gills have been studied extensively in several species, the abundance and distribution of microbes in the digestive system have not been adequately addressed. Here we use Fluorescence In-Situ Hybridization (FISH) and laser scanning confocal microscopy with 16S rRNA directed oligonucleotide probes targeting all domains, domains Bacteria and Archaea, and other taxonomic groups to examine the digestive microbiota of 17 specimens from 5 shipworm species (Bankia setacea, Lyrodus pedicellatus, Lyrodus massa, Lyrodus sp. and Teredo aff. triangularis). These data reveal that the caecum, a large sac-like appendage of the stomach that typically contains large quantities of wood particles and is considered the primary site of wood digestion, harbors only very sparse microbial populations. However, a significant number of bacterial cells were observed in fecal pellets within the intestines. These results suggest that due to low abundance, bacteria in the caecum may contribute little to lignocellulose degradation. In contrast, the comparatively high population density of bacteria in the intestine suggests a possible role for intestinal bacteria in the degradation of lignocellulose.

  9. Distribution, abundance, and biology of the alewife in U.S. waters of Lake Superior

    USGS Publications Warehouse

    Bronte, Charles R.; Selgeby, James H.; Curtis, Gary L.

    1991-01-01

    Alewives (Alosa pseudoharengus) were first reported in Lake Superior in 1954 and gradually increased in abundance in the late 1950s. In the 1960s and early 1970s, the fish were widespread in the lake but scarce. We determined the more recent abundance and distribution of alewives by cross-contour trawling in the spring in 1978–1988. Alewives were scarce lake-wide; the mean catch rate was only 23 fish per 100 h of trawling and represented a density of 0.003 kg per hectare in the area swept by the trawls. Fish of six age groups were caught in trawls in spring and gill nets in fall in 1983–1987. Total annual mortality was 64%, a high natural rate in the absence of fishing. Alewives in Lake Superior were small at the end of their first growing season but later grew faster than those in the other Great Lakes. Fecundity, estimated to be 64,000 eggs (mean total length = 187 mm) was higher than in other freshwater stocks. Zooplankton was the major food of alewives < 100 mm long and Mysis was the main food of larger fish. Exposure to water temperatures below lethal minimums for overwintering fish and for developing eggs limits the success of this species in Lake Superior.

  10. Evolutionary dynamics of selfish DNA explains the abundance distribution of genomic subsequences.

    PubMed

    Sheinman, Michael; Ramisch, Anna; Massip, Florian; Arndt, Peter F

    2016-08-04

    Since the sequencing of large genomes, many statistical features of their sequences have been found. One intriguing feature is that certain subsequences are much more abundant than others. In fact, abundances of subsequences of a given length are distributed with a scale-free power-law tail, resembling properties of human texts, such as Zipf's law. Despite recent efforts, the understanding of this phenomenon is still lacking. Here we find that selfish DNA elements, such as those belonging to the Alu family of repeats, dominate the power-law tail. Interestingly, for the Alu elements the power-law exponent increases with the length of the considered subsequences. Motivated by these observations, we develop a model of selfish DNA expansion. The predictions of this model qualitatively and quantitatively agree with the empirical observations. This allows us to estimate parameters for the process of selfish DNA spreading in a genome during its evolution. The obtained results shed light on how evolution of selfish DNA elements shapes non-trivial statistical properties of genomes.

  11. Evolutionary dynamics of selfish DNA explains the abundance distribution of genomic subsequences

    PubMed Central

    Sheinman, Michael; Ramisch, Anna; Massip, Florian; Arndt, Peter F.

    2016-01-01

    Since the sequencing of large genomes, many statistical features of their sequences have been found. One intriguing feature is that certain subsequences are much more abundant than others. In fact, abundances of subsequences of a given length are distributed with a scale-free power-law tail, resembling properties of human texts, such as Zipf’s law. Despite recent efforts, the understanding of this phenomenon is still lacking. Here we find that selfish DNA elements, such as those belonging to the Alu family of repeats, dominate the power-law tail. Interestingly, for the Alu elements the power-law exponent increases with the length of the considered subsequences. Motivated by these observations, we develop a model of selfish DNA expansion. The predictions of this model qualitatively and quantitatively agree with the empirical observations. This allows us to estimate parameters for the process of selfish DNA spreading in a genome during its evolution. The obtained results shed light on how evolution of selfish DNA elements shapes non-trivial statistical properties of genomes. PMID:27488939

  12. Relationships beetween the regional distribution of carabid beetles ( Coleoptera, Carabidae) and the abundance of their potential prey

    NASA Astrophysics Data System (ADS)

    Guillemain, Matthieu; Loreau, Michel; Daufresne, Tanguy

    We studied regional variation in abundance of carabid beetles in relation to both abiotic factors and prey availability in 19 forest sites, with a focus on the relationship between the distributions of the carabid beetle Abax ater Villers and its prey, earthworms. No significant correlation was found between the abundance of Abax ater and any of the abiotic factors considered. On the other had, litter thickness was strongly associated with the composition and structure of the whole carabid community: an increase in litter thickness was accompanied by a decrease in both total carabid abundance and carabid species richnes, and by an increase in the proportion of forest species. The relationship between the regional distributions of abundance of carabid beetles and their potential prev was very different for soil-dwelling and litter-dwelling prey. There was a significant pattern of association between low soil prey abundance and low carabid abundance, which suggests that carabid abundance is partly controlled by prey numbers in the soil. On the other hand, there was a significant pattern of association between high prey density per volume of litter and low Abax ater abundance, thus showing a negative relationship between the abundance of this species and prey density in the litter. We propose two complementary hypotheses to explain this pattern: prey depletion by predation in the litter, and biased sampling of carabids due to differential mobility. The prey depletion hypothesis considers that soil acts as a refuge from predation, so that prey numbers in the soil control carabid abundance, while dominant carabids in turn deplete prey and control their abundance in the litter. This hypothesis suggests a complex relationship between the abundances of carabids and their prey.

  13. Spatial Distribution of Pair Production Over the Pulsar Polar Cap

    NASA Astrophysics Data System (ADS)

    Belyaev, Mikhail A.; Parfrey, Kyle

    2016-10-01

    Using an analytic, axisymmetric approach that includes general relativity, coupled to a condition for pair production deduced from simulations, we derive general results about the spatial distribution of pair-producing field lines over the pulsar polar cap. In particular, we show that pair production on magnetic field lines operates over only a fraction of the polar cap for an aligned rotator for general magnetic field configurations, assuming the magnetic field varies spatially on a scale that is larger than the size of the polar cap. We compare our result to force-free simulations of a pulsar with a dipole surface field and find excellent agreement. Our work has implications for first-principles simulations of pulsar magnetospheres and for explaining observations of pulsed radio and high-energy emission.

  14. Landscape genetics and the spatial distribution of chronic wasting disease

    USGS Publications Warehouse

    Blanchong, Julie A.; Samuel, M.D.; Scribner, K.T.; Weckworth, B.V.; Langenberg, J.A.; Filcek, K.B.

    2008-01-01

    Predicting the spread of wildlife disease is critical for identifying populations at risk, targeting surveillance and designing proactive management programmes. We used a landscape genetics approach to identify landscape features that influenced gene flow and the distribution of chronic wasting disease (CWD) in Wisconsin white-tailed deer. CWD prevalence was negatively correlated with genetic differentiation of study area deer from deer in the area of disease origin (core-area). Genetic differentiation was greatest, and CWD prevalence lowest, in areas separated from the core-area by the Wisconsin River, indicating that this river reduced deer gene flow and probably disease spread. Features of the landscape that influence host dispersal and spatial patterns of disease can be identified based on host spatial genetic structure. Landscape genetics may be used to predict high-risk populations based on their genetic connection to infected populations and to target disease surveillance, control and preventative activities. ?? 2007 The Royal Society.

  15. Spatial distribution of enzyme activities along the root and in the rhizosphere of different plants

    NASA Astrophysics Data System (ADS)

    Razavi, Bahar S.; Zarebanadkouki, Mohsen; Blagodatskaya, Evgenia; Kuzyakov, Yakov

    2015-04-01

    Extracellular enzymes are important for decomposition of many biological macromolecules abundant in soil such as cellulose, hemicelluloses and proteins. Activities of enzymes produced by both plant roots and microbes are the primary biological drivers of organic matter decomposition and nutrient cycling. So far acquisition of in situ data about local activity of different enzymes in soil has been challenged. That is why there is an urgent need in spatially explicit methods such as 2-D zymography to determine the variation of enzymes along the roots in different plants. Here, we developed further the zymography technique in order to quantitatively visualize the enzyme activities (Spohn and Kuzyakov, 2013), with a better spatial resolution We grew Maize (Zea mays L.) and Lentil (Lens culinaris) in rhizoboxes under optimum conditions for 21 days to study spatial distribution of enzyme activity in soil and along roots. We visualized the 2D distribution of the activity of three enzymes:β-glucosidase, leucine amino peptidase and phosphatase, using fluorogenically labelled substrates. Spatial resolution of fluorescent images was improved by direct application of a substrate saturated membrane to the soil-root system. The newly-developed direct zymography shows different pattern of spatial distribution of enzyme activity along roots and soil of different plants. We observed a uniform distribution of enzyme activities along the root system of Lentil. However, root system of Maize demonstrated inhomogeneity of enzyme activities. The apical part of an individual root (root tip) in maize showed the highest activity. The activity of all enzymes was the highest at vicinity of the roots and it decreased towards the bulk soil. Spatial patterns of enzyme activities as a function of distance from the root surface were enzyme specific, with highest extension for phosphatase. We conclude that improved zymography is promising in situ technique to analyze, visualize and quantify

  16. [Distribution and abundance of the ascidian Ecteinascidia turbinata (Ascidiacea: Perophoridae) in Cuba].

    PubMed

    Hernández-Zanuy, Aida; Carballo, José Luis; García-Cagide, Alida; Naranjo, Santiago; Esquivel, Macario

    2007-03-01

    Permanently submerged mangrove roots (Rhizophora mangle) are the main habitat of the ascidian Ecteinascidia turbinata in Cuba. It was occasionally found on black coral (Antiphates caribeana) between 22 and 38 meters deep. This species exhibits a wide distribution in all the mangrove keys surrounding the Island of Cuba but does not occur in riparian or fringing mangroves. Populations of this species are abundant in Cuba: in 75% of the 58 localities sampled the species was present and in 57% more than 50% of the roots held at least one colony. The highest colony densities were found in the northern coast of Pinar del Rio province with values near one colony per lineal meter of mangrove root. We found the highest density (1.46 col/m) and greatest biomass at Jutías Key, with values between 25 and 660 g/m. The average of wet biomass in the studied mangroves was 73.63 g/m.

  17. On the G-dwarf abundance distribution in the solar cylinder

    NASA Astrophysics Data System (ADS)

    Sommer-Larsen, J.

    1991-03-01

    The oxygen abundance distribution of G-dwarfs in the solar cylinder is determined using the G-dwarf data of Pagel and Patchett (1975) as local normalization and two different types of models of the local, vertical structure of the galactic disk. One of these is the model of Norris and Ryan 1989), while the other is obtained using the Polak-Ribiere method to fit the data of Kuijken and Gilmore (1989). The results are compared to simple chemical-evolution modes, and infall time scales of 3-4.5 and 4-6 Gyr are derived. It is found that the infall time scales obtained here compare well with the empirically determined halo formation time scale of 3 Gyr obtained by Schuster and Nissen. This suggests that the formation of the halo and disk were coupled processes in the sense that the halo star formed out of the gas, which later became the galactic disk.

  18. Spatially distributed characterization of soil-moisture dynamics using travel-time distributions

    NASA Astrophysics Data System (ADS)

    Heße, Falk; Zink, Matthias; Kumar, Rohini; Samaniego, Luis; Attinger, Sabine

    2017-01-01

    Travel-time distributions are a comprehensive tool for the characterization of hydrological system dynamics. Unlike the streamflow hydrograph, they describe the movement and storage of water within and throughout the hydrological system. Until recently, studies using such travel-time distributions have generally either been applied to lumped models or to real-world catchments using available time series, e.g., stable isotopes. Whereas the former are limited in their realism and lack information on the spatial arrangements of the relevant quantities, the latter are limited in their use of available data sets. In our study, we employ the spatially distributed mesoscale Hydrological Model (mHM) and apply it to a catchment in central Germany. Being able to draw on multiple large data sets for calibration and verification, we generate a large array of spatially distributed states and fluxes. These hydrological outputs are then used to compute the travel-time distributions for every grid cell in the modeling domain. A statistical analysis indicates the general soundness of the upscaling scheme employed in mHM and reveals precipitation, saturated soil moisture and potential evapotranspiration as important predictors for explaining the spatial heterogeneity of mean travel times. In addition, we demonstrate and discuss the high information content of mean travel times for characterization of internal hydrological processes.

  19. Seagrass distribution and abundance in Eastern Gulf of Mexico coastal waters

    NASA Astrophysics Data System (ADS)

    Iverson, Richard L.; Bittaker, Henry F.

    1986-05-01

    The marine angiosperms Thalassia testudinum, Syringodium filiforme, and Halodule wrightii form two of the largest reported seagrass beds along the northwest and southern coasts of Florida where they cover about 3000 square km in the Big Bend area and about 5500 square km in Florida Bay, respectively. Most of the leaf biomass in the Big Bend area and outer Florida Bay was composed of Thalassia testudinum and Syringodium filiforme which were distributed throughout the beds but which were more abundant in shallow depths. A short-leaved form of Halodule wrightii grew in monotypic stands in shallow water near the inner edges of the beds, while Halophila decipiens and a longer-leaved variety of H. wrightii grew scattered throughout the beds, in monotypic stands near the outer edges of the beds, and in deeper water outside the beds. Halophila engelmanni was observed scattered at various depths throughout the seagrass beds and in monospecific patches in deep water outside the northern bed. Ruppia maritima grew primarily in brackish water around river mouths. The cross-shelf limits of the two major seagrass beds are controlled nearshore by increased water turbidity and lower salinity around river mouths and off-shore by light penetration to depths which receive 10% or more of sea surface photosynthetically active radiation. Seagrasses form large beds only along low energy reaches of the coast. The Florida Bay seagrass bed contained about twice the short-shoot density of both Thalassia testudinum and Syringodium filiforme, for data averaged over all depths, and about four times the average short-shoot density of both species in shallow water compared with the Big Bend seagrass bed. The differences in average seagrass abundance between Florida Bay and the Big Bend area may be a consequence of the effects of greater seasonal solar radiation and water temperature fluctuations experienced by plants in the northern bed, which lies at the northern distribution limit for American

  20. The initial abundance and distribution of 92Nb in the Solar System

    NASA Astrophysics Data System (ADS)

    Iizuka, Tsuyoshi; Lai, Yi-Jen; Akram, Waheed; Amelin, Yuri; Schönbächler, Maria

    2016-04-01

    Niobium-92 is an extinct proton-rich nuclide, which decays to 92Zr with a half-life of 37 Ma. This radionuclide potentially offers a unique opportunity to determine the timescales of early Solar System processes and the site(s) of nucleosynthesis for p-nuclei, once its initial abundance and distribution in the Solar System are well established. Here we present internal Nb-Zr isochrons for three basaltic achondrites with known U-Pb ages: the angrite NWA 4590, the eucrite Agoult, and the ungrouped achondrite Ibitira. Our results show that the relative Nb-Zr isochron ages of the three meteorites are consistent with the time intervals obtained from the Pb-Pb chronometer for pyroxene and plagioclase, indicating that 92Nb was homogeneously distributed among their source regions. The Nb-Zr and Pb-Pb data for NWA 4590 yield the most reliable and precise reference point for anchoring the Nb-Zr chronometer to the absolute timescale: an initial 92Nb/93Nb ratio of (1.4 ± 0.5) ×10-5 at 4557.93 ± 0.36 Ma, which corresponds to a 92Nb/93Nb ratio of (1.7 ± 0.6) ×10-5 at the time of the Solar System formation. On the basis of this new initial ratio, we demonstrate the capability of the Nb-Zr chronometer to date early Solar System objects including troilite and rutile, such as iron and stony-iron meteorites. Furthermore, we estimate a nucleosynthetic production ratio of 92Nb to the p-nucleus 92Mo between 0.0015 and 0.035. This production ratio, together with the solar abundances of other p-nuclei with similar masses, can be best explained if these light p-nuclei were primarily synthesized by photodisintegration reactions in Type Ia supernovae.

  1. Distribution and abundance of Adelges tsugae (Hemiptera: Adelgidae) within hemlock trees.

    PubMed

    Joseph, S V; Hanula, J L; Braman, S K

    2011-12-01

    We studied the distribution of hemlock woolly adelgid, Adelges tsugae Annand (Hemiptera: Adelgidae), within hemlock trees for three summer (progrediens) and two winter (sistens) generations in northern Georgia. Eastern hemlock, Tsuga canadensis (L.) Carrière, trees were treated with 0, 10, or 25% of 1.5 g of imidacloprid per 2.5 cm of tree diameter at breast height and fertilized or not in a factorial design. Adelgid ovisacs per centimeter of branch were more abundant from June 2007 to June 2008 in the upper tree crown of insecticide untreated trees and when all trees were combined and that was the general trend for most comparisons. However, ovisacs were more abundant in the lower crown of insecticide treated trees in June 2008. More sistens nymphs settled on the upper crown branches than on the lower branches in summers 2007 and 2008. Higher eggs per ovisac were observed in the upper crown in February 2008 and in both the winter and summer 2009. In contrast, adelgids were more fecund in the lower crown in June 2008. On fertilized trees, eggs laid per adult were higher in the upper crown in February 2008. In summer 2008, eggs per ovisac were higher in the lower crown, but this reversed again to the upper crown by summer 2009. New growth of branches also varied among sample dates. These data demonstrate the variable distribution of adelgid and hemlock growth within trees over time and suggest that sampling only one crown area will not provide accurate estimates of adelgid densities.

  2. Impact of soil matric potential on the fine-scale spatial distribution and activity of specific microbial degrader communities.

    PubMed

    Monard, Cécile; Mchergui, Chokri; Nunan, Naoise; Martin-Laurent, Fabrice; Vieublé-Gonod, Laure

    2012-09-01

    The impact of the soil matric potential on the relationship between the relative abundance of degraders and their activity and on the spatial distribution of both at fine scales was determined to understand the role of environmental conditions in the degradation of organic substrates. The mineralization of (13) C-glucose and (13) C-2,4-dichlorophenoxyacetic acid (2,4-D) was measured at different matric potentials (-0.001, -0.01 and -0.316 MPa) in 6 × 6 × 6 mm(3) cubes excised from soil cores. At the end of the incubation, total bacterial and 2,4-D degrader abundances were determined by quantifying the 16S rRNA and the tfdA genes, respectively. The mineralization of 2,4-D was more sensitive to changes in matric potential than was that of glucose. The amount and spatial structure of 2,4-D mineralization decreased with matric potential, whilst the spatial variability increased. On the other hand, the spatial variation of glucose mineralization was less affected by changes in matric potential. The relationship between the relative abundance of 2,4-D degraders and 2,4-D mineralization was significantly affected by matric potential: the relative abundance of tfdA needed to be higher to reach a given level of 2,4-D mineralization in dryer than in moister conditions. The data show how microbial interactions with their microhabitat can have an impact on soil processes at larger scales.

  3. Long-term spatial heterogeneity in mallard distribution in the Prairie pothole region

    USGS Publications Warehouse

    Janke, Adam K.; Anteau, Michael J.; Stafford, Joshua D.

    2017-01-01

    The Prairie Pothole Region (PPR) of north-central United States and south-central Canada supports greater than half of all breeding mallards (Anas platyrhynchos) annually counted in North America and is the focus of widespread conservation and research efforts. Allocation of conservation resources for this socioeconomically important population would benefit from an understanding of the nature of spatiotemporal variation in distribution of breeding mallards throughout the 850,000 km2 landscape. We used mallard counts from the Waterfowl Breeding Population and Habitat Survey to test for spatial heterogeneity and identify high- and low-abundance regions of breeding mallards over a 50-year time series. We found strong annual spatial heterogeneity in all years: 90% of mallards counted annually were on an average of only 15% of surveyed segments. Using a local indicator of spatial autocorrelation, we found a relatively static distribution of low-count clusters in northern Montana, USA, and southern Alberta, Canada, and a dynamic distribution of high-count clusters throughout the study period. Distribution of high-count clusters shifted southeast from northwestern portions of the PPR in Alberta and western Saskatchewan, Canada, to North and South Dakota, USA, during the latter half of the study period. This spatial redistribution of core mallard breeding populations was likely driven by interactions between environmental variation that created favorable hydrological conditions for wetlands in the eastern PPR and dynamic land-use patterns related to upland cropping practices and government land-retirement programs. Our results highlight an opportunity for prioritizing relatively small regions within the PPR for allocation of wetland and grassland conservation for mallard populations. However, the extensive spatial heterogeneity in core distributions over our study period suggests such spatial prioritization will have to overcome challenges presented by dynamic land

  4. Spatial distribution of tropical wetlands in Central Brazil as influenced by geological and geomorphological settings

    NASA Astrophysics Data System (ADS)

    De-Campos, Alfredo Borges; de Cedro, Diego Antônio Botelho; Tejerina-Garro, Francisco Leonardo; Bayer, Maximiliano; Carneiro, Gabriel Tenaglia

    2013-10-01

    Tropical wetlands in Central Brazil are located in savanna areas and are made up of more terrestrial-type wetlands - campo limpo úmido (grassland-type savanna), campo sujo úmido (shrub-type savanna), mata galeria (riverine forest); as well as more aquatic-type wetlands - vereda (valley-side marsh with palm groves of Mauritia flexuosa), várzea (backswamp), lake, and river. They are regulated by a seasonal climatic regime characterized by a wet-rainy season from October to March and then followed by a dry season. Underground water is abundant and rivers frequently overflow during the rainy season. Many of these wetlands which are protected by law are significant regulators of water quality. In order to predict tropical wetland function and draw up environmental management policies, it is important to understand how abiotic and biotic factors influence tropical wetland origin and spatial distribution. In this large-scale study we set out to investigate the influence that geological and geormorphological settings, i.e. geological substrates and geomorphological units, have on the spatial distribution of tropical wetlands in Central Brazil. Two watersheds, the Caiapó and Piracanjuba, were selected in order to carry out the study. They present different types of rock and unconsolidated surface materials. Planation surface, escarpment and steep slope, gentle slope, and aggradation are the dominant geomorphological units in the watersheds. Principal component analysis was conducted in order to determine the influence of the selected abiotic variables on the spatial distribution of tropical wetlands. The study showed that the presence of sedimentary and low-grade metamorphic rocks and planation surface strongly influence the spatial distribution of the more terrestrial-type wetlands. Geological and geomorphological settings explain about 60% of the variability in the spatial distribution of these wetland types. No clear effect of the abiotic variables selected was

  5. Spatial distribution and biophysics chemistry characterization of Pearl Oyster farming in Semau Strait, East Nusa Tenggara

    NASA Astrophysics Data System (ADS)

    Yulia Wardani, Enggar; Wardiatno, Yusli; Bahri Agus, Syamsul

    2017-01-01

    Pearl oyster is one of marine organisms which has high of economic value. One of Indonesia region that potential for pearl oyster farming activity is Semau Strait-East Nusa Tenggara. The purpose of this study is mapping and characterize spatial distribution based on biophysics chemistry condition of pearl oyster farming. Mapping using Geographic Information System (GIS) tools, while grouping and characterize using hierarchical clustering and Mann-Whitney method. Grouping based on character similarity of biophysics chemistry divided the stations distribution into three groups: Group I is excellent group, Group II is good group and Group III is bad group for pearl oyster farming. Group I is excellent area because it has the highest values of dissolved oxygen, chlorophyll-a, and phytoplankton abundance. Group III is bad area because it temperature is high relatively.

  6. Spatial distribution of neurons innervated by chandelier cells.

    PubMed

    Blazquez-Llorca, Lidia; Woodruff, Alan; Inan, Melis; Anderson, Stewart A; Yuste, Rafael; DeFelipe, Javier; Merchan-Perez, Angel

    2015-09-01

    Chandelier (or axo-axonic) cells are a distinct group of GABAergic interneurons that innervate the axon initial segments of pyramidal cells and are thus thought to have an important role in controlling the activity of cortical circuits. To examine the circuit connectivity of chandelier cells (ChCs), we made use of a genetic targeting strategy to label neocortical ChCs in upper layers of juvenile mouse neocortex. We filled individual ChCs with biocytin in living brain slices and reconstructed their axonal arbors from serial semi-thin sections. We also reconstructed the cell somata of pyramidal neurons that were located inside the ChC axonal trees and determined the percentage of pyramidal neurons whose axon initial segments were innervated by ChC terminals. We found that the total percentage of pyramidal neurons that were innervated by a single labeled ChC was 18-22 %. Sholl analysis showed that this percentage peaked at 22-35 % for distances between 30 and 60 µm from the ChC soma, decreasing to lower percentages with increasing distances. We also studied the three-dimensional spatial distribution of the innervated neurons inside the ChC axonal arbor using spatial statistical analysis tools. We found that innervated pyramidal neurons are not distributed at random, but show a clustered distribution, with pockets where almost all cells are innervated and other regions within the ChC axonal tree that receive little or no innervation. Thus, individual ChCs may exert a strong, widespread influence on their local pyramidal neighbors in a spatially heterogeneous fashion.

  7. Spatial and temporal distribution of the invasive lionfish Pterois volitans in coral reefs of Tayrona National Natural Park, Colombian Caribbean.

    PubMed

    Bayraktarov, Elisa; Alarcón-Moscoso, Javier; Polanco F, Andrea; Wild, Christian

    2014-01-01

    The lionfish Pterois volitans is an invasive species throughout the Western Atlantic that disturbs functioning of local ecosystems such as coral reefs via fast and intense consumption of small fish and invertebrates. In 2009, lionfish populated the bays of Tayrona National Natural Park (TNNP), a biodiversity hotspot in the Colombian Caribbean that is strongly influenced by changing environmental conditions due to a rainy and dry season. So far, the spatial and temporal distribution of P. volitans in the bays of TNNP is unknown. Therefore, this study assessed the abundance and body lengths of P. volitans during monthly surveys throughout the year 2012 in four bays (thereof two bays where lionfish removals were undertaken) of TNNP at 10 m water depth in coral reefs using transect tools. Findings revealed lionfish abundances of 2.9 ± 0.9 individuals ha(-1) with lengths of 20-25 cm for TNNP, hinting to an established, mostly adult local population. Actual TNNP lionfish abundances are thereby very similar to those at Indo-Pacific reef locations where the invasive lionfish formerly originated from. Significant spatial differences for lionfish abundances and body lengths between different bays in TNNP suggest habitat preferences of P. volitans depending on age. Lionfish abundances were highly variable over time, but without significant differences between seasons. Removals could not reduce lionfish abundances significantly during the period of study. This study therefore recommends improved management actions in order to control the already established invasive lionfish population in TNNP.

  8. Spatial and temporal distribution of the invasive lionfish Pterois volitans in coral reefs of Tayrona National Natural Park, Colombian Caribbean

    PubMed Central

    Alarcón-Moscoso, Javier; Polanco F., Andrea; Wild, Christian

    2014-01-01

    The lionfish Pterois volitans is an invasive species throughout the Western Atlantic that disturbs functioning of local ecosystems such as coral reefs via fast and intense consumption of small fish and invertebrates. In 2009, lionfish populated the bays of Tayrona National Natural Park (TNNP), a biodiversity hotspot in the Colombian Caribbean that is strongly influenced by changing environmental conditions due to a rainy and dry season. So far, the spatial and temporal distribution of P. volitans in the bays of TNNP is unknown. Therefore, this study assessed the abundance and body lengths of P. volitans during monthly surveys throughout the year 2012 in four bays (thereof two bays where lionfish removals were undertaken) of TNNP at 10 m water depth in coral reefs using transect tools. Findings revealed lionfish abundances of 2.9 ± 0.9 individuals ha−1 with lengths of 20–25 cm for TNNP, hinting to an established, mostly adult local population. Actual TNNP lionfish abundances are thereby very similar to those at Indo–Pacific reef locations where the invasive lionfish formerly originated from. Significant spatial differences for lionfish abundances and body lengths between different bays in TNNP suggest habitat preferences of P. volitans depending on age. Lionfish abundances were highly variable over time, but without significant differences between seasons. Removals could not reduce lionfish abundances significantly during the period of study. This study therefore recommends improved management actions in order to control the already established invasive lionfish population in TNNP. PMID:24883257

  9. Ticks and tick-borne pathogens in South Bohemia (Czech Republic)--Spatial variability in Ixodes ricinus abundance, Borrelia burgdorferi and tick-borne encephalitis virus prevalence.

    PubMed

    Hönig, V; Svec, P; Halas, P; Vavruskova, Z; Tykalova, H; Kilian, P; Vetiskova, V; Dornakova, V; Sterbova, J; Simonova, Z; Erhart, J; Sterba, J; Golovchenko, M; Rudenko, N; Grubhoffer, L

    2015-07-01

    Spatial distribution of Ixodes ricinus tick host-seeking activity, as well as prevalence of Borrelia burgdorferi sensu lato and tick-borne encephalitis virus (TBEV) were studied in the TBE endemic area of South Bohemia (Czech Republic). High variability in tick abundance detected in a network of 30 study sites was most closely associated with characteristics of vegetation cover. Of 11,182 tested tick samples, 12% carried DNA of spirochete from B. burgdorferi s.l. complex. B. afzelii and B. garinii prevailed among spirochete species. The presence of B. spielmanii in the region was confirmed. The median number of borrelial genome copies in positive samples reached 6.6 × 10(3) by real-time PCR. The total prevalence of TBEV in pooled samples reached 0.32% (20,057 samples tested), at least one TBEV positive tick was present in 21 out of 30 sampling sites.

  10. The Distribution and Abundance of Mercury Methylating Microorganisms in Mid-Atlantic Wetlands

    NASA Astrophysics Data System (ADS)

    Santillan, E. F. U.; Gilmour, C. C.; Schwartz, G.; Christensen, G. A.; King, A. J.; Elias, D. A.

    2015-12-01

    The discovery of the genes responsible for microbial methylmercury production, hgcAB, has led to the identification of novel Hg methylators with diverse metabolisms including Fe and SO42- reducing bacteria, syntrophs, and methanogens. We recently developed DNA probes for hgcA in each group of methylators: Deltaproteobacteria, Firmicutes, and Archaea [Christensen, 2015]. In this study, we use the probes to determine quantity and distribution of hgcA+ organisms in mid-Atlantic marshes and sediments, and in Hg-contaminated wetland soils. We also analyze hgcA distribution over a 28-day soil slurry experiment designed to evaluate the impact of activated carbon on Hg methylation and demethylation [Gilmour, 2015]. Initial soils show Deltaproteobacteria comprise most hgcA+ organisms. Methanogens encompass >45% of the remaining methylators. The addition of SO42- to induce SO42- reducing conditions in slurries caused the number of hgcA+ Deltaproteobacteria to increase and the number of hgcA+ methanogens to decrease to >32%. In soils and slurries, Firmicutes were below detection, suggesting our Firmicute primers are either unrepresentative in natural samples, or that hgcA+ Firmicutes are rare. This observation is interesting as Firmicutes include organisms with divergent metabolisms, and their role in environmental methylation is still unknown. Slurries also show no correlation between hgcA abundance and Hg concentrations. We now plan to explore how hgcA abundance relates to Hg-methylation and electron acceptor availability. Our results offer initial insights into the natural distribution of hgcA, supporting the idea that the distribution of different methylators is related to electron acceptors and redox chemistry. Christensen, G., Wymore, AM, King, A, Pdar, M, Hurt Jur, RA, Santillan, EFU, Gilmour, CC, Brandt, CC, Brown, SD, Palumbo, AV, Elias, DA (2015), A Study of Mercury Methylation Genetics: Qualitative and Quantitative Analysis of hgcAB in Pure Culture, paper presented

  11. Flow distributions and spatial correlations in human brain capillary networks

    NASA Astrophysics Data System (ADS)

    Lorthois, Sylvie; Peyrounette, Myriam; Larue, Anne; Le Borgne, Tanguy

    2015-11-01

    The vascular system of the human brain cortex is composed of a space filling mesh-like capillary network connected upstream and downstream to branched quasi-fractal arterioles and venules. The distribution of blood flow rates in these networks may affect the efficiency of oxygen transfer processes. Here, we investigate the distribution and correlation properties of blood flow velocities from numerical simulations in large 3D human intra-cortical vascular network (10000 segments) obtained from an anatomical database. In each segment, flow is solved from a 1D non-linear model taking account of the complex rheological properties of blood flow in microcirculation to deduce blood pressure, blood flow and red blood cell volume fraction distributions throughout the network. The network structural complexity is found to impart broad and spatially correlated Lagrangian velocity distributions, leading to power law transit time distributions. The origins of this behavior (existence of velocity correlations in capillary networks, influence of the coupling with the feeding arterioles and draining veins, topological disorder, complex blood rheology) are studied by comparison with results obtained in various model capillary networks of controlled disorder. ERC BrainMicroFlow GA615102, ERC ReactiveFronts GA648377.

  12. Diversity and spatial distribution of surname structure in South Korea

    NASA Astrophysics Data System (ADS)

    Kwon, Okyu; Son, Woo-Sik

    2015-11-01

    We studied the population structure of South Korea by using the distributions of surnames for all 246 administrative regions. Every 4,177 surnames are distinguished by their bon-gwan which indicates the place of their family clans. Using Fisher's Alpha, we found that the level of inbreeding increases as the distance from the capital Seoul increases. We introduced the Shannon index to measure the level of spatial diffusion for each surname population, and the geographical clusters based on similarities of the surname compositions among the regions show almost exact agreement with those at the administrative districts.

  13. Spatial patterns of seaweed distribution in Malaysia using GIS

    NASA Astrophysics Data System (ADS)

    Lian, Du Hai; Sim, Jillian Ooi Lean; Fauzi, Rosmadi; Moi, Phang Siew

    2008-10-01

    The objective of this article is to represent spatial patterns of seaweed distribution in Malaysia. Seaweeds have been collected since 1984 along coastlines of 4675 km of peninsular Malaysia, Sabah, and Sarawak. However, there is no seaweed database and they cannot be displayed in a geographic view. Therefore, a database with 805 georeferenced observations was setup and GIS is used to analyze seaweed diversity based on this database. The highest number of observations is 94 which occur along east coastline of peninsular Malaysia. The highest number of species richness is 82 which are also along east coastline of peninsular Malaysia. Rhodophyta has the highest species richness while Chlorophyta has the least species richness.

  14. The light element abundance distribution in NGC 5128 from planetary nebulae

    NASA Astrophysics Data System (ADS)

    Walsh, J. R.; Jacoby, G. H.; Peletier, R. F.; Walton, N. A.

    2012-08-01

    Context. Planetary nebulae in the nearest large elliptical galaxy provide light element abundances difficult or impossible to measure by other means in a stellar system very different from the galaxies in the Local Group. Aims: The light element abundance pattern from many planetary nebulae (PNe) at a range of radial distances was measured from optical spectroscopy in the elliptical galaxy NGC 5128, which hosts the radio source Centaurus A. The PN abundances, in particular for oxygen, and the PN progenitor properties are related to the galaxy stellar properties. Methods: PNe in NGC 5128 covering the upper 4 mag of the luminosity function were selected from a catalogue. VLT FORS1 multi-slit spectra in blue and red ranges were obtained over three fields at 3, 9 and 15' projected radii (4, 8 and 17 kpc, for an adopted distance of 3.8 Mpc) and spectra were extracted for 51 PNe. Accurate electron temperature and density diagnostics are usually required for abundance determination, but were not available for most of the PNe. Cloudy photoionization models were run to match the spectra by a spherical, constant density nebula ionized by a black body central star. He, N, O and Ne abundances with respect to H were determined and, for brighter PN, S and Ar; central star luminosities and temperatures are also derived. Results: Emission line ratios for the 51 PNe are entirely typical of PN such as in the Milky Way. The temperature sensitive [O III]4363 Å line was weakly detected in 10 PNe, both [O II] and [O III] lines were detected in 30 PNe, and only the bright [O III]5007 Å line was detected in 7 PN. For 40 PNe with Cloudy models, from the upper 2 mag of the [O III] luminosity function, the most reliably estimated element, oxygen, has a mean 12 + log(O/H) of 8.52 with a narrow distribution. No obvious radial gradient is apparent in O/H over a range 2-20 kpc. Comparison of the PN abundances with the stellar population, from the spectra of the integrated stellar light on the

  15. An approach to estimate spatial distribution of analyte within cells using spectrally-resolved fluorescence microscopy

    NASA Astrophysics Data System (ADS)

    Sharma, Dharmendar Kumar; Irfanullah, Mir; Basu, Santanu Kumar; Madhu, Sheri; De, Suman; Jadhav, Sameer; Ravikanth, Mangalampalli; Chowdhury, Arindam

    2017-03-01

    While fluorescence microscopy has become an essential tool amongst chemists and biologists for the detection of various analyte within cellular environments, non-uniform spatial distribution of sensors within cells often restricts extraction of reliable information on relative abundance of analytes in different subcellular regions. As an alternative to existing sensing methodologies such as ratiometric or FRET imaging, where relative proportion of analyte with respect to the sensor can be obtained within cells, we propose a methodology using spectrally-resolved fluorescence microscopy, via which both the relative abundance of sensor as well as their relative proportion with respect to the analyte can be simultaneously extracted for local subcellular regions. This method is exemplified using a BODIPY sensor, capable of detecting mercury ions within cellular environments, characterized by spectral blue-shift and concurrent enhancement of emission intensity. Spectral emission envelopes collected from sub-microscopic regions allowed us to compare the shift in transition energies as well as integrated emission intensities within various intracellular regions. Construction of a 2D scatter plot using spectral shifts and emission intensities, which depend on the relative amount of analyte with respect to sensor and the approximate local amounts of the probe, respectively, enabled qualitative extraction of relative abundance of analyte in various local regions within a single cell as well as amongst different cells. Although the comparisons remain semi-quantitative, this approach involving analysis of multiple spectral parameters opens up an alternative way to extract spatial distribution of analyte in heterogeneous systems. The proposed method would be especially relevant for fluorescent probes that undergo relatively nominal shift in transition energies compared to their emission bandwidths, which often restricts their usage for quantitative ratiometric imaging in

  16. Spatial variation in abundance, size and orientation of juvenile corals related to the biomass of parrotfishes on the Great Barrier Reef, Australia.

    PubMed

    Trapon, Melanie L; Pratchett, Morgan S; Hoey, Andrew S

    2013-01-01

    For species with complex life histories such as scleractinian corals, processes occurring early in life can greatly influence the number of individuals entering the adult population. A plethora of studies have examined settlement patterns of coral larvae, mostly on artificial substrata, and the composition of adult corals across multiple spatial and temporal scales. However, relatively few studies have examined the spatial distribution of small (≤50 mm diameter) sexually immature corals on natural reef substrata. We, therefore, quantified the variation in the abundance, composition and size of juvenile corals (≤50 mm diameter) among 27 sites, nine reefs, and three latitudes spanning over 1000 km on Australia's Great Barrier Reef. Overall, 2801 juveniles were recorded with a mean density of 6.9 (±0.3 SE) ind.m(-2), with Acropora, Pocillopora, and Porites accounting for 84.1% of all juvenile corals surveyed. Size-class structure, orientation on the substrate and taxonomic composition of juvenile corals varied significantly among latitudinal sectors. The abundance of juvenile corals varied both within (6-13 ind.m(-2)) and among reefs (2.8-11.1 ind.m(-2)) but was fairly similar among latitudes (6.1-8.2 ind.m(-2)), despite marked latitudinal variation in larval supply and settlement rates previously found at this scale. Furthermore, the density of juvenile corals was negatively correlated with the biomass of scraping and excavating parrotfishes across all sites, revealing a potentially important role of parrotfishes in determining distribution patterns of juvenile corals on the Great Barrier Reef. While numerous studies have advocated the importance of parrotfishes for clearing space on the substrate to facilitate coral settlement, our results suggest that at high biomass they may have a detrimental effect on juvenile coral assemblages. There is, however, a clear need to directly quantify rates of mortality and growth of juvenile corals to understand the relative

  17. Relative impacts of the fragmentation and spatial structure of habitats on freshwater fish distributions: application on French watersheds (Invited)

    NASA Astrophysics Data System (ADS)

    Le Pichon, C.; Belliard, J.; Talès, E.; Gorges, G.; Clément, F.

    2009-12-01

    Most of the rivers of the Ile de France region, intimately linked with the megalopolis of Paris, are severely altered and freshwater fishes are exposed to habitat alteration, reduced connectivity and pollution. Several species thus present fragmented distributions and decreasing densities. In this context, the European Water Framework Directive (2000) has goals of hydrosystems rehabilitation and no further damage. In particular, the preservation and restor