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Sample records for abundant rough endoplasmic

  1. Protein Translocation across the Rough Endoplasmic Reticulum

    PubMed Central

    Mandon, Elisabet C.; Trueman, Steven F.; Gilmore, Reid

    2013-01-01

    The rough endoplasmic reticulum is a major site of protein biosynthesis in all eukaryotic cells, serving as the entry point for the secretory pathway and as the initial integration site for the majority of cellular integral membrane proteins. The core components of the protein translocation machinery have been identified, and high-resolution structures of the targeting components and the transport channel have been obtained. Research in this area is now focused on obtaining a better understanding of the molecular mechanism of protein translocation and membrane protein integration. PMID:23251026

  2. Terasaki Spiral Ramps in the Rough Endoplasmic Reticulum

    NASA Astrophysics Data System (ADS)

    Guven, Jemal; Huber, Greg; Valencia, Dulce María

    2014-10-01

    We present a model describing the morphology as well as the assembly of "Terasaki ramps," the recently discovered helicoidal connections linking adjacent sheets of the rough endoplasmic reticulum (ER). The fundamental unit is a localized symmetric double-ramped "parking garage" formed by two separated gently pitched, approximately helicoidal, ramps of opposite chiralities. This geometry is stabilized by a short-range repulsive interaction between ramps associated with bending energy which opposes the long-range attraction associated with tension. The ramp inner boundaries are themselves stabilized by the condensation of membrane-shaping proteins along their length. A mechanism for parking garage self-assembly is proposed involving the nucleation of dipoles at the center of tubular three-way junctions within the smooth ER. Our predictions are compared with the experimental data.

  3. Terasaki spiral ramps in the rough endoplasmic reticulum.

    PubMed

    Guven, Jemal; Huber, Greg; Valencia, Dulce María

    2014-10-31

    We present a model describing the morphology as well as the assembly of "Terasaki ramps," the recently discovered helicoidal connections linking adjacent sheets of the rough endoplasmic reticulum (ER). The fundamental unit is a localized symmetric double-ramped "parking garage" formed by two separated gently pitched, approximately helicoidal, ramps of opposite chiralities. This geometry is stabilized by a short-range repulsive interaction between ramps associated with bending energy which opposes the long-range attraction associated with tension. The ramp inner boundaries are themselves stabilized by the condensation of membrane-shaping proteins along their length. A mechanism for parking garage self-assembly is proposed involving the nucleation of dipoles at the center of tubular three-way junctions within the smooth ER. Our predictions are compared with the experimental data. PMID:25396396

  4. Topography of glycosylation reactions in the rough endoplasmic reticulum membrane

    SciTech Connect

    Perez, M.; Hirschberg, C.B.

    1986-05-25

    The translocation of UDP-glucose and GDP-mannose from an external to a luminal compartment has been examined in rat liver vesicles derived from the rough endoplasmic reticulum (RER). RER vesicles with the same topographical orientation as in vivo were incubated with a mixture of (/sup 3/H)UDP-glucose and UDP-(/sup 14/C)glucose to demonstrate that the intact sugar nucleotide was translocated into the lumen of the vesicles. The translocation of UDP-glucose was dependent on temperature and was saturable at high concentrations of the sugar nucleotide. The transfer of glucose to endogenous acceptors was dependent on the translocation of UDP-glucose into the lumen of the RER since leaky vesicles resulted in both a decrease in transport and transfer of glucose to endogenous acceptors. Preliminary results suggest that the mechanism of UDP-glucose transport into RER-derived vesicles is via a coupled exchange with luminal UMP. Using the same experimental approach to detect translocation of UDP-glucose into the lumen of RER vesicles, we were unable to detect transport of GDP-mannose. Incubation of leaky vesicles with GDP-mannose resulted in stimulation of the amount of mannose transferred to endogenous acceptors, in marked contrast to that observed for UDP-glucose and UDP-N-acetylglucosamine. These results suggest that whereas UDP-glucose is translocated across the RER membrane in vitro, GDP-mannose is not transported. In addition, these results tentatively suggest that there is asymmetric synthesis of the lipid-linked oligosaccharides within the membrane of the RER.

  5. Detection of GTP-binding proteins in purified derivatives of rough endoplasmic reticulum.

    PubMed Central

    Lanoix, J; Roy, L; Paiement, J

    1989-01-01

    As a first step in determining the molecular mechanism of membrane fusion stimulated by GTP in rough endoplasmic reticulum (RER), we have looked for GTP-binding proteins. Rough microsomes from rat liver were treated for the release of ribosomes, and the membrane proteins were separated by SDS/polyacrylamide-gel electrophoresis. The polypeptides were then blotted on to nitrocellulose sheets and incubated with [alpha-32P]GTP [Bhullar & Haslam (1987) Biochem. J. 245, 617-620]. A doublet of polypeptides (23 and 24 kDa) was detected in the presence of 2 microM-MgCl2. Binding of [alpha-32P]GTP was blocked by 1-5 mM-EDTA, 10-10,000 nM-GTP or 10 microM-GDP. Either guanosine 5'-[gamma-thio]triphosphate or guanosine 5'-[beta gamma-imido]triphosphate at 100 nM completely inhibited binding, but ATP, CTP or UTP at 10 mciroM did not. Pretreatment of microsomes by mild trypsin treatment (0.5-10 micrograms of trypsin/ml, concentrations known not to affect microsomal permeability) led to inhibition of [alpha-32P]GTP binding, suggesting a cytosolic membrane orientation for the GTP-binding proteins. Two-dimensional gel-electrophoretic analysis revealed the 23 and 24 kDa [alpha-32P]GTP-binding proteins to have similar acid isoelectric points. [alpha-32P]GTP binding occurred to similar proteins of rough microsomes from rat liver, rat prostate and dog pancreas, as well as to a 23 kDa protein of rough microsomes from frog liver, but occurred to distinctly different proteins in a rat liver plasma-membrane-enriched fraction. Thus [alpha-32P]GTP binding has been demonstrated to two low-molecular-mass (approx. 21 kDa) proteins in the rough endoplasmic reticulum of several varied cell types. Images Fig. 1. Fig. 2. Fig. 3. Fig. 4. Fig. 5. Fig. 6. Fig. 7. PMID:2508629

  6. Targeting of Rough Endoplasmic Reticulum Membrane Proteins and Ribosomes in Invertebrate Neurons

    PubMed Central

    Rolls, Melissa M.; Hall, David H.; Victor, Martin; Stelzer, Ernst H. K.; Rapoport, Tom A.

    2002-01-01

    The endoplasmic reticulum (ER) is divided into rough and smooth domains (RER and SER). The two domains share most proteins, but RER is enriched in some membrane proteins by an unknown mechanism. We studied RER protein targeting by expressing fluorescent protein fusions to ER membrane proteins in Caenorhabditis elegans. In several cell types RER and general ER proteins colocalized, but in neurons RER proteins were concentrated in the cell body, whereas general ER proteins were also found in neurites. Surprisingly RER membrane proteins diffused rapidly within the cell body, indicating they are not localized by immobilization. Ribosomes were also concentrated in the cell body, suggesting they may be in part responsible for targeting RER membrane proteins. PMID:12006669

  7. Distinct mechanisms controlling rough and smooth endoplasmic reticulum contacts with mitochondria.

    PubMed

    Wang, Peter T C; Garcin, Pierre O; Fu, Min; Masoudi, Matthew; St-Pierre, Pascal; Panté, Nelly; Nabi, Ivan R

    2015-08-01

    Gp78 (also known as AMFR), an endoplasmic-reticulum (ER)-associated protein degradation (ERAD) E3 ubiquitin ligase, localizes to mitochondria-associated ER and targets the mitofusin (Mfn1 and Mfn2) mitochondrial fusion proteins for degradation. Gp78 is also the cell surface receptor for autocrine motility factor (AMF), which prevents Gp78-dependent mitofusin degradation. Gp78 ubiquitin ligase activity promotes ER-mitochondria association and ER-mitochondria Ca(2+) coupling, processes that are reversed by AMF. Electron microscopy of HT-1080 fibrosarcoma cancer cells identified both smooth ER (SER; ∼8 nm) and wider (∼50-60 nm) rough ER (RER)-mitochondria contacts. Both short hairpin RNA (shRNA)-mediated knockdown of Gp78 (shGp78) and AMF treatment selectively reduced the extent of RER-mitochondria contacts without impacting on SER--mitochondria contacts. Concomitant small interfering RNA (siRNA)-mediated knockdown of Mfn1 increased SER-mitochondria contacts in both control and shGp78 cells, whereas knockdown of Mfn2 increased RER-mitochondria contacts selectively in shGp78 HT-1080 cells. The mitofusins therefore inhibit ER-mitochondria interaction. Regulation of close SER-mitochondria contacts by Mfn1 and of RER-mitochondria contacts by AMF-sensitive Gp78-mediated degradation of Mfn2 define new mechanisms that regulate ER-mitochondria interactions. PMID:26065430

  8. Ribosome binding sites visualized on freeze-fractured membranes of the rough endoplasmic reticulum.

    PubMed

    Giddings, T H; Staehelin, L A

    1980-04-01

    Freeze-fracture micrographs of cells of the green alga Micrasterias denticulata stabilized by ultrarapid freezing reveal imprints of polysomes on the rough endoplasmic reticulum membranes. The imprints appear as broad, spiral ridges on the P faces and as corresponding wide grooves on the E faces of the membranes. Distinct 110-A particles with a spacing of 270 +/- 45 A are associated with the P-face ridges. Where imprints of individual ribosomes can be discerned, it is seen that there is a 1:1 relationship between the ribosomes and the 110-A particles, and that the 110-A particles are located in a peripheral position with respect to the polysome spirals. We propose that the 110-A particles could be structural equivalents of ribosome-binding sites, consisting of a molecule each of ribophorins I and II and a nascent polypeptide chain. These observations suggest that the spiral form of polysomes could result from the forces generated by the extrusion of the growing polypeptide chains to one side of the polysome. PMID:7364870

  9. Ribosome binding sites visualized on freeze-fractured membranes of the rough endoplasmic reticulum

    PubMed Central

    1980-01-01

    Freeze-fracture micrographs of cells of the green alga Micrasterias denticulata stabilized by ultrarapid freezing reveal imprints of polysomes on the rough endoplasmic reticulum membranes. The imprints appear as broad, spiral ridges on the P faces and as corresponding wide grooves on the E faces of the membranes. Distinct 110-A particles with a spacing of 270 +/- 45 A are associated with the P-face ridges. Where imprints of individual ribosomes can be discerned, it is seen that there is a 1:1 relationship between the ribosomes and the 110-A particles, and that the 110-A particles are located in a peripheral position with respect to the polysome spirals. We propose that the 110- A particles could be structural equivalents of ribosome-binding sites, consisting of a molecule each of ribophorins I and II and a nascent polypeptide chain. These observations suggest that the spiral form of polysomes could result from the forces generated by the extrusion of the growing polypeptide chains to one side of the polysome. PMID:7364870

  10. Changes in ribbon synapses and rough endoplasmic reticulum of rat utricular macular hair cells in weightlessness

    NASA Technical Reports Server (NTRS)

    Ross, M. D.

    2000-01-01

    This study combined ultrastructural and statistical methods to learn the effects of weightlessness on rat utricular maculae. A principle aim was to determine whether weightlessness chiefly affects ribbon synapses of type II cells, since the cells communicate predominantly with branches of primary vestibular afferent endings. Maculae were microdissected from flight and ground control rat inner ears collected on day 13 of a 14-day spaceflight (F13), landing day (R0) and day 14 postflight (R14) and were prepared for ultrastructural study. Ribbon synapses were counted in hair cells examined in a Zeiss 902 transmission electron microscope. Significance of synaptic mean differences was determined for all hair cells contained within 100 section series, and for a subset of complete hair cells, using SuperANOVA software. The synaptic mean for all type II hair cells of F13 flight rats increased by 100%, and that for complete cells by 200%. Type I cells were less affected, with synaptic mean differences statistically insignificant in complete cells. Synapse deletion began within 8 h upon return to Earth. Additionally, hair cell laminated rough endoplasmic reticulum of flight rats was reversibly disorganized on R0. Results support the thesis that synapses in type II hair cells are uniquely affected by altered gravity. Type II hair cells may be chiefly sensors of gravitational and type I cells of translational linear accelerations.

  11. Quantitative organellar proteomics analysis of rough endoplasmic reticulum from normal and acute pancreatitis rat pancreas

    PubMed Central

    Chen, Xuequn; Sans, Maria Dolors; Strahler, John R.; Karnovsky, Alla; Ernst, Stephen A.; Michailidis, George; Andrews, Philip C.; Williams, John A.

    2010-01-01

    Summary The rough endoplasmic reticulum (RER) is a central organelle for synthesizing and processing digestive enzymes and alteration of ER functions may participate in the pathogenesis of acute pancreatitis (AP). To comprehensively characterize the normal and diseased RER subproteome, this study quantitatively compared the protein compositions of pancreatic RER between normal and AP animals using isobaric tags (iTRAQ) and 2D LC-MALDI-MS/MS. A total of 469 unique proteins were revealed from four independent experiments using two different AP models. These proteins belong to a large number of functional categories including ribosomal proteins, translocon subunits, chaperones, secretory proteins, and glyco- and lipid-processing enzymes. 37 RER proteins (25 unique in arginine-induced, 6 unique in caerulein-induced and 6 common in both models of AP) showed significant changes during AP including translational regulators and digestive enzymes whereas only mild changes were found in some ER chaperones. The six proteins common to both AP models including a decrease in pancreatic triacylglycerol lipase precursor, Erp27, and prolyl 4-hydroxylase beta polypeptide as well as a dramatic increase in fibrinogen alpha, beta and gamma chains. These results suggest that the early stages of AP involve changes of multiple RER proteins that may affect the synthesis and processing of digestive enzymes. PMID:19954227

  12. Evidence for a KATP Channel in Rough Endoplasmic Reticulum (rerKATP Channel) of Rat Hepatocytes

    PubMed Central

    Fahanik-Babaei, Javad; Saghiri, Reza; Sauve, Remy; Eliassi, Afsaneh

    2015-01-01

    We report in a previous study the presence of a large conductance K+ channel in the membrane of rough endoplasmic reticulum (RER) from rat hepatocytes incorporated into lipid bilayers. Channel activity in this case was found to decrease in presence of ATP 100 µM on the cytoplasmic side and was totally inhibited at ATP concentrations greater than 0.25 mM. Although such features would be compatible with the presence of a KATP channel in the RER, recent data obtained from a brain mitochondrial inner membrane preparation have provided evidence for a Maxi-K channel which could also be blocked by ATP within the mM concentration range. A series of channel incorporation experiments was thus undertaken to determine if the ATP-sensitive channel originally observed in the RER corresponds to KATP channel. Our results indicate that the gating and permeation properties of this channel are unaffected by the addition of 800 nM charybdotoxin and 1 µM iberiotoxin, but appeared sensitive to 10 mM TEA and 2.5 mM ATP. Furthermore, adding 100 µM glibenclamide at positive potentials and 400 µM tolbutamide at negative or positive voltages caused a strong inhibition of channel activity. Finally Western blot analyses provided evidence for Kir6.2, SUR1 and/or SUR2B, and SUR2A expression in our RER fractions. It was concluded on the basis of these observations that the channel previously characterized in RER membranes corresponds to KATP, suggesting that opening of this channel may enhance Ca2+ releases, alter the dynamics of the Ca2+ transient and prevent accumulation of Ca2+ in the ER during Ca2+ overload. PMID:25950903

  13. Analysis of a novel double-barreled anion channel from rat liver rough endoplasmic reticulum.

    PubMed Central

    Morier, N; Sauvé, R

    1994-01-01

    The presence of anionic channels in stripped rough endoplasmic reticulum membranes isolated from rat hepatocytes was investigated by fusing microsomes from these membranes to a planar lipid bilayer. Several types of anion-selective channels were observed including a voltage-gated Cl- channel, the activity of which appeared in bursts characterized by transitions among three distinct conductance levels of 0 pS (0 level), 160 pS (O1 level), and 320 pS (O2 level), respectively, in 450 mM (cis) 50 mM (trans) KCl conditions. A chi 2 analysis on current records where interburst silent periods were omitted showed that the relative probability of current levels 0 (baseline), O1, and O2 followed a binomial statistic. However, measurements of the conditional probabilities W(level 0 at tau/level O2 at 0) and W(level O2 at tau/level 0 at 0) provided clear evidence of direct transitions between the current levels 0 and O2 without any detectable transitions to the intermediate level O1. It was concluded on the basis of these results that the observed channel was controlled by at least two distinct gating processes, namely 1) a voltage-dependent activation mechanism in which the entire system behaves as two independent monomeric channels of 160 pS with each channel characterized by a simple Open-Closed kinetic, and 2) a slow voltage-dependent process that accounts for both the appearance of silent periods between bursts of channel activity and the transitions between the current levels 0 and O2. Finally, an analysis of the relative probability for the system to be in levels 0, O1, and O2 showed that our results are more compatible with a model in which all the states resulting from the superposition of the two independent monomeric channels have access at different rates to a common inactivated state than with a model where a simple Open-Closed main gate either occludes or exposes simultaneously two independent 160-pS monomers. Images FIGURE 2 FIGURE 6 PMID:7524709

  14. Progressive Depletion of Rough Endoplasmic Reticulum in Epithelial Cells of the Small Intestine in Monosodium Glutamate Mice Model of Obesity.

    PubMed

    Nakadate, Kazuhiko; Motojima, Kento; Hirakawa, Tomoya; Tanaka-Nakadate, Sawako

    2016-01-01

    Chronic obesity is a known risk factor for metabolic syndrome. However, little is known about pathological changes in the small intestine associated with chronic obesity. This study investigated cellular and subcellular level changes in the small intestine of obese mice. In this study, a mouse model of obesity was established by early postnatal administration of monosodium glutamate. Changes in body weight were monitored, and pathological changes in the small intestine were evaluated using hematoxylin-eosin and Nissl staining and light and electron microscopy. Consequently, obese mice were significantly heavier compared with controls from 9 weeks of age. Villi in the small intestine of obese mice were elongated and thinned. There was reduced hematoxylin staining in the epithelium of the small intestine of obese mice. Electron microscopy revealed a significant decrease in and shortening of rough endoplasmic reticulum in epithelial cells of the small intestine of obese mice compared with normal mice. The decrease in rough endoplasmic reticulum in the small intestine epithelial cells of obese mice indicates that obesity starting in childhood influences various functions of the small intestine, such as protein synthesis, and could impair both the defense mechanism against invasion of pathogenic microbes and nutritional absorption. PMID:27437400

  15. Progressive Depletion of Rough Endoplasmic Reticulum in Epithelial Cells of the Small Intestine in Monosodium Glutamate Mice Model of Obesity

    PubMed Central

    Nakadate, Kazuhiko; Motojima, Kento; Hirakawa, Tomoya; Tanaka-Nakadate, Sawako

    2016-01-01

    Chronic obesity is a known risk factor for metabolic syndrome. However, little is known about pathological changes in the small intestine associated with chronic obesity. This study investigated cellular and subcellular level changes in the small intestine of obese mice. In this study, a mouse model of obesity was established by early postnatal administration of monosodium glutamate. Changes in body weight were monitored, and pathological changes in the small intestine were evaluated using hematoxylin-eosin and Nissl staining and light and electron microscopy. Consequently, obese mice were significantly heavier compared with controls from 9 weeks of age. Villi in the small intestine of obese mice were elongated and thinned. There was reduced hematoxylin staining in the epithelium of the small intestine of obese mice. Electron microscopy revealed a significant decrease in and shortening of rough endoplasmic reticulum in epithelial cells of the small intestine of obese mice compared with normal mice. The decrease in rough endoplasmic reticulum in the small intestine epithelial cells of obese mice indicates that obesity starting in childhood influences various functions of the small intestine, such as protein synthesis, and could impair both the defense mechanism against invasion of pathogenic microbes and nutritional absorption. PMID:27437400

  16. Subcellular distribution of small GTP binding proteins in pancreas: Identification of small GTP binding proteins in the rough endoplasmic reticulum

    SciTech Connect

    Nigam, S.K. )

    1990-02-01

    Subfractionation of a canine pancreatic homogenate was performed by several differential centrifugation steps, which gave rise to fractions with distinct marker profiles. Specific binding of guanosine 5{prime}-({gamma}-({sup 35}S)thio)triphosphate (GTP({gamma}-{sup 35}S)) was assayed in each fraction. Enrichment of GTP({gamma}-{sup 35}S) binding was greatest in the interfacial smooth microsomal fraction, expected to contain Golgi and other smooth vesicles. There was also marked enrichment in the rough microsomal fraction. Electron microscopy and marker protein analysis revealed the rough microsomes (RMs) to be highly purified rough endoplasmic reticulum (RER). The distribution of small (low molecular weight) GTP binding proteins was examined by a ({alpha}-{sup 32}P)GTP blot-overlay assay. Several apparent GTP binding proteins of molecular masses 22-25 kDa were detected in various subcellular fractions. In particular, at least two such proteins were found in the Golgi-enriched and RM fractions, suggesting that these small GTP binding proteins were localized to the Golgi and RER. To more precisely localize these proteins to the RER, native RMs and RMs stripped of ribosomes by puromycin/high salt were subjected to isopycnic centrifugation. The total GTP({gamma}-{sup 35}S) binding, as well as the small GTP binding proteins detected by the ({alpha}-{sup 32}P)GTP blot overlay, distributed into fractions of high sucrose density, as did the RER marker ribophorin I. Consistent with a RER localization, when the RMS were stripped of ribosomes and subjected to isopycnic centrifugation, the total GTP({gamma}-{sup 35}S) binding and the small GTP binding proteins detected in the blot-overlay assay shifted to fractions of lighter sucrose density along with the RER marker.

  17. Human MUC5AC mucin dimerizes in the rough endoplasmic reticulum, similarly to the MUC2 mucin.

    PubMed Central

    Asker, N; Axelsson, M A; Olofsson, S O; Hansson, G C

    1998-01-01

    Biosynthetic studies on the human MUC5AC mucin were performed by immunoprecipitations with antisera recognizing only the non-O-glycosylated apomucin in the colon adenocarcinoma cell line LS 174T. Pulse-chase studies and subcellular fractionations showed that MUC5AC formed dimers in the rough endoplasmic reticulum within 15 min of the initiation of biosynthesis. No non-O-glycosylated species larger than dimers were identified. The dimerization was N-glycosylation-dependent, because tunicamycin treatment significantly lowered the rate of dimerization. When the biosynthesis of MUC5AC apomucin was compared with that of MUC2 apomucin, also produced in the LS 174T cell line, both apomucins were assembled in similar ways with respect to their rates of dimerization with and without inhibition of N-glycosylation. No heterodimerization was observed between the human MUC5AC and the MUC2 apomucins despite the extensive sequence similarities in the positions of the cysteine residues in the C-termini proposed to be involved in mucin dimerization. PMID:9761738

  18. Modeling Anisothermality in LRO Diviner Observations to Assess Surface Roughness and Rock Abundance

    NASA Astrophysics Data System (ADS)

    Williams, J.; Paige, D. A.; Hayne, P. O.; Vasavada, A. R.; Bandfield, J. L.

    2013-12-01

    The Diviner Lunar Radiometer Experiment on NASA's Lunar Reconnaissance Orbiter (LRO) observes radiance in 7 infrared spectral channels from which brightness temperatures of the lunar surface are derived [1]. Multiple temperatures in the instrument's field of view result in variations in brightness temperature in the individual channels, anisothermality, due to the non-linear nature of Planck radiance with respect to wavelength; the warmer temperatures have an increased proportional influence on brightness temperatures at shorter wavelengths. In general, Diviner's surface footprint contains small scale variations in temperature due to surface roughness and rocks. Anisothermality in Diviner nighttime brightness temperatures has been successfully exploited to map rock abundances on the Moon as rocks cool more slowly than the regolith, and therefore are generally warmer at night [2]. A three-dimensional thermal diffusion model that balances incident solar radiation with infrared emission and conduction into the subsurface is employed to model Diviner observations resulting from surface roughness and rocks at multiple length-scales and illumination conditions. The model includes ray tracing of illumination so that slope effects and shadowing at different solar incidence angles can be explored for arbitrary surface geometries. We find that surface roughness and rocks with length scales as small as 5 cm can generate anisothermality in the Diviner thermal channels in both daytime and nighttime observations. At smaller scales, lateral conduction should become important. The length-scale dependence of anisothermality will be explored further in this study. [1] Paige et al. (2010) Space Sci. Rev., 150: 125-160. [2] Bandfield et al. (2011), JGR, 116.

  19. Biochemical and structural characterization of an endoplasmic reticulum-localized late embryogenesis abundant (LEA) protein from the liverwort Marchantia polymorpha.

    PubMed

    Hatanaka, Rie; Furuki, Takao; Shimizu, Tempei; Takezawa, Daisuke; Kikawada, Takahiro; Sakurai, Minoru; Sugawara, Yasutake

    2014-11-28

    Late embryogenesis abundant (LEA) proteins, which accumulate to high levels in seeds during late maturation, are associated with desiccation tolerance. A member of the LEA protein family was found in cultured cells of the liverwort Marchantia polymorpha; preculture treatment of these cells with 0.5M sucrose medium led to their acquisition of desiccation tolerance. We characterized this preculture-induced LEA protein, designated as MpLEA1. MpLEA1 is predominantly hydrophilic with a few hydrophobic residues that may represent its putative signal peptide. The protein also contains a putative endoplasmic reticulum (ER) retention sequence, HEEL, at the C-terminus. Microscopic observations indicated that GFP-fused MpLEA1 was mainly localized in the ER. The recombinant protein MpLEA1 is intrinsically disordered in solution. On drying, MpLEA1 shifted predominantly toward α-helices from random coils. Such changes in conformation are a typical feature of the group 3 LEA proteins. Recombinant MpLEA1 prevented the aggregation of α-casein during desiccation-rehydration events, suggesting that MpLEA1 exerts anti-aggregation activity against desiccation-sensitive proteins by functioning as a "molecular shield". Moreover, the anti-aggregation activity of MpLEA1 was ten times greater than that of BSA or insect LEA proteins, which are known to prevent aggregation on drying. Here, we show that an ER-localized LEA protein, MpLEA1, possesses biochemical and structural features specific to group 3 LEA proteins. PMID:25450698

  20. Studies on membrane proteins involved in ribosome binding on the rough endoplasmic reticulum. Ribophorins have no ribosome-binding activity.

    PubMed Central

    Yoshida, H; Tondokoro, N; Asano, Y; Mizusawa, K; Yamagishi, R; Horigome, T; Sugano, H

    1987-01-01

    A membrane protein fraction showing affinity for ribosomes was isolated from rat liver microsomes (microsomal fractions) in association with ribosomes by treatment of the microsomes with Emulgen 913 and then solubilized from the ribosomes with sodium deoxycholate. This protein fraction was separated into two fractions, glycoproteins, including ribophorins I and II, and non-glycoproteins, virtually free from ribophorins I and II, on concanavalin A-Sepharose columns. The two fractions were each reconstituted into liposomes to determine their ribosome-binding activities. The specific binding activity of the non-glycoprotein fraction was approx. 2.3-fold higher than that of the glycoprotein fraction. The recovery of ribosome-binding capacity of the two fractions was about 85% of the total binding capacity of the material applied to a concanavalin A-Sepharose column, and about 90% of it was found in the non-glycoprotein fraction. The affinity constants of the ribosomes for the reconstituted liposomes were somewhat higher than those for stripped rough microsomes. The mode of ribosome binding to the reconstituted liposomes was very similar to that to the stripped rough microsomes, in its sensitivity to proteolytic enzymes and its strong inhibition by increasing KCl concentration. These results support the idea that ribosome binding to rat liver microsomes is not directly mediated by ribophorins I and II, but that another unidentified membrane protein(s) plays a role in ribosome binding. Images Fig. 1. Fig. 3. Fig. 5. PMID:3663192

  1. Reconstitution into liposomes of membrane proteins involved in ribosome binding on rough endoplasmic reticulum. Ribosome-binding capacity.

    PubMed Central

    Yamaguchi, M; Sakai, M; Horigome, T; Omata, S; Sugano, H

    1981-01-01

    A membrane protein fraction having a high affinity for polyribosomes was isolated from microsomal membranes of rat liver and was incorporated into liposomes made from microsomal lipids to evaluate the polyribosome-binding capacity of the reconstituted liposomes, with the following results. (1) The polyribosome binding to the reconstituted liposomes depended on the amounts of polyribosomes added to the binding mixture. (2) Liposomes made from lipids alone did not bind any polyribosomes. (3) The polyribosome-binding capacity of the reconstituted liposomes was very sensitive to proteolytic enzyme and strongly inhibited by addition of 0.1 mM-aurintricarboxylic acid or by increasing KCl concentration. These results suggest that the binding mechanism of polyribosomes to the reconstituted liposomes is much like that for rough microsomal membrane stripped of endogenous polyribosomes. PMID:7306032

  2. The effects of triton X-100 on the transfer of mannose, glucose and n-acetylglusomine phosphate to dolichol monophosphate by preparations of rough and smooth endoplasmic reticulum and of mitochondria of rat liver.

    PubMed Central

    Coolbear, T; Mookerjea, S; Hemming, F W

    1979-01-01

    Triton X-100 and exogenous dolichol monophosphate have been used to investigate the nature of enzymes responsible for the transfer of mannose, glucose and N-acetylglucosamine phosphate from nucleotide donors to dolichol monophosphate in vesicles derived from rough and smooth endoplasmic reticulum and mitochondria. Mitochondria were shown to contain the highest specific activities of these enzymes. The responses of the glycosyltransferases to increasing concentrations of Triton X-100 and the effect on these responses of exogenous dolichol monophosphate suggest that the enzymes for mannose and glucose transfer are less hydrophobic, and therefore less intrinsic, in the membrane than the enzyme for N-acetylglucosamine phosphate transfer. In smooth vesicles the results are consistent with mannosyl- and glucosyl-transferases being located at both inner and outer faces of the membrane. In rough vesicles and in mitochondria mannosyl- and glucosyl-transferases were confirmed at the outer face. There is, however, only one site of N-acetylglucosamine phosphate transfer, this being more hydrophobically located in the membrane than the other sites of glycosyl transfer. Mitochondrial enzyme activity closely resembled that of rough endoplasmic reticulum in response to Triton X-100 and exogenous dolichol monophosphate, and is probably associated with the outer membrane. PMID:534537

  3. Cholesterol and steroid synthesizing smooth endoplasmic reticulum of adrenocortical cells contains high levels of translocation apparatus proteins.

    PubMed

    Black, V H; Sanjay, A; van Leyen, K; Möeller, I; Lauring, B; Kreibich, G

    2002-11-01

    Steroid-secreting cells possess abundant smooth endoplasmic reticulum whose membranes contain many enzymes involved in sterol and steroid synthesis. In this study we demonstrate that adrenal smooth microsomal subfractions enriched in these membranes also possess high levels of proteins belonging to the translocation apparatus, proteins previously assumed to be confined to morphologically identifiable rough endoplasmic reticulum (RER). We further demonstrate that these smooth microsomal subfractions are capable of effecting the functions of these protein complexes: co-translational translocation, signal peptide cleavage and N-glycosylation of newly synthesized polypeptides. We hypothesize that these elements participate in regulating the levels of ER-targeted membrane proteins involved in cholesterol and steroid metabolism in a sterol-dependent and hormonally-regulated manner. PMID:12530645

  4. The protein translocation machinery of the endoplasmic reticulum.

    PubMed

    Walter, P; Gilmore, R; Müller, M; Blobel, G

    1982-12-24

    The rough endoplasmic reticulum (r.e.r.) has been postulated to possess a single translation-coupled translocation system (in multiple copies) that effects signal sequence-mediated translocation of all secretory and lysosomal proteins and integration of all integral membrane proteins whose port of entry is the rough endoplasmic reticulum (G. Blobel 1980 Proc. natn. Acad. Sci. U.S.A. 77, 1496-1500). Two proteins have been isolated that are components of the r.e.r. translocation system. Their properties and function in protein translocation across and integration into membranes are discussed. PMID:6131460

  5. [The biological effects of liposome interactions with the endoplasmic reticulum].

    PubMed

    Foia, L; Costuleanu, N; Pavel, M

    1998-01-01

    Liposome research is a thriving field at the confluence of biophysics, cell biology and medicine. The principal medical application of liposomes is based on their potential to act as carriers for a broad spectrum of drugs and other agents, including antigens with or without immunomodulators in vaccination. Treatment of peritoneal macrophages of rats with small unilamellar vesicles of dipalmitoylphosphatidylcholine (DPPC SUV) potentiated their activation for tumor cell lysis by endotoxins. The measurement of the fluorescence anisotropy of diphenylhexatriene showed a phase transition. No phase transition was observed in the rough endoplasmic reticulum membranes of macrophages either treated or not treated with cholesterol/DPPC SUV. The synergistic effect of DPPC SUV on the tumoricidal activity of macrophages induced by endotoxins appears to be correlated with the changes in the properties of the rough endoplasmic reticulum membranes. Both effects were transient; they had the same kinetics of induction and reversion. PMID:10756813

  6. Structural organization of the endoplasmic reticulum.

    PubMed

    Voeltz, Gia K; Rolls, Melissa M; Rapoport, Tom A

    2002-10-01

    The endoplasmic reticulum (ER) is a continuous membrane system but consists of various domains that perform different functions. Structurally distinct domains of this organelle include the nuclear envelope (NE), the rough and smooth ER, and the regions that contact other organelles. The establishment of these domains and the targeting of proteins to them are understood to varying degrees. Despite its complexity, the ER is a dynamic structure. In mitosis it must be divided between daughter cells and domains must be re-established, and even in interphase it is constantly rearranged as tubules extend along the cytoskeleton. Throughout these rearrangements the ER maintains its basic structure. How this is accomplished remains mysterious, but some insight has been gained from in vitro systems. PMID:12370207

  7. Isolation of Endoplasmic Reticulum Fractions from Mammary Epithelial Tissue.

    PubMed

    Chanat, Eric; Le Parc, Annabelle; Lahouassa, Hichem; Badaoui, Bouabid

    2016-06-01

    In the mammary glands of lactating animals, the mammary epithelial cells that surround the lumen of the acini produce and secrete copious amounts of milk. Functional differentiation of these mammary epithelial cells depends on the development of high-efficiency secretory pathways, notably for protein and lipid secretion. Protein secretion is a fundamental process common to all animal cells that involves a subset of cellular organelles, including the endoplasmic reticulum and the Golgi apparatus. In contrast, en masse secretion of triglycerides and cholesterol esters in the form of milk fat globules is a unique feature of the mammary epithelial cell. Cytoplasmic lipid droplets, the intracellular precursors of milk fat globules, originate from the endoplasmic reticulum, as do most milk-specific proteins. This organelle is therefore pivotal in the biogenesis of milk components. Fractionation of the cell into its subcellular parts is an approach that has proven very powerful for understanding organelle function and for studying the specific role of an organelle in a given cell activity. Here we describe a method for the purification of both smooth and rough microsomes, the membrane-bound endoplasmic reticulum fragments that form from endoplasmic reticulum domains when cells are broken up, from mammary gland tissue at lactation. PMID:27048289

  8. [Endoplasmic reticulum stress response in osteogenesis].

    PubMed

    Saito, Atsushi; Imaizumi, Kazunori

    2013-11-01

    Various cellular conditions such as synthesis of abundant proteins, expressions of mutant proteins and oxidative stress lead to accumulation of unfolded or misfolded proteins in the endoplasmic reticulum (ER) lumen. This type of stress is called ER stress. The excessive ER stress causes cellular damages followed by apoptosis. When ER stress occurs, cells are activated ER stress response (unfolded protein response) to avoid cellular damages. Recently, it has been clear that ER stress response plays crucial roles not only in cell survival after ER stress but also in regulating various cellular functions and tissue formations. In particular, ER stress and ER stress response regulate protein quality control, secretory protein production, and smooth secretion of proteins in the cells such as osteoblasts which synthesize and secrete enormous matrix proteins. PMID:24162596

  9. The Gp78 ubiquitin ligase: probing endoplasmic reticulum complexity.

    PubMed

    St Pierre, Pascal; Nabi, Ivan R

    2012-02-01

    The endoplasmic reticulum (ER) has been classically divided, based on electron microscopy analysis, into parallel ribosome-studded rough ER sheets and a tubular smooth ER network. Recent studies have identified molecular constituents of the ER, the reticulons and DP1, that drive ER tubule formation and whose expression determines expression of ER sheets and tubules and thereby rough and smooth ER. However, segregation of the ER into only two domains remains simplistic and multiple functionally distinct ER domains necessarily exist. In this review, we will discuss the sub-organization of the ER in different domains focusing on the localization and role of the gp78 ubiquitin ligase in the mitochondria-associated smooth ER and on the evidence for a quality control ERAD domain. PMID:22045301

  10. Calcium binding chaperones of the endoplasmic reticulum.

    PubMed

    Coe, Helen; Michalak, Marek

    2009-01-01

    The endoplasmic reticulum is a major Ca(2+) store of the cell that impacts many cellular processes within the cell. The endoplasmic reticulum has roles in lipid and sterol synthesis, protein folding, post-translational modification and secretion and these functions are affected by intraluminal endoplasmic reticulum Ca(2+). In the endoplasmic reticulum there are several Ca(2+) buffering chaperones including calreticulin, Grp94, BiP and protein disulfide isomerase. Calreticulin is one of the major Ca(2+) binding/buffering chaperones in the endoplasmic reticulum. It has a critical role in Ca(2+) signalling in the endoplasmic reticulum lumen and this has significant impacts on many Ca(2+)-dependent pathways including control of transcription during embryonic development. In addition to Ca(2+) buffering, calreticulin plays important role in the correct folding and quality control of newly synthesized glycoproteins. PMID:20093733

  11. Endoplasmic reticulum stress and atherosclerosis

    PubMed Central

    Hotamisligil, Gökhan S

    2010-01-01

    Atherosclerosis and related cardiovascular diseases represent one of the greatest threats to human health worldwide. Despite important progress in prevention and treatment, these conditions still account for one third of all deaths annually. Often presented together with obesity, insulin resistance and type 2 diabetes, these chronic diseases are strongly influenced by pathways that lie at the interface of chronic inflammation and nutrient metabolism. Here I discuss recent advances in the study of endoplasmic reticulum stress as one mechanism that links immune response with nutrient sensing in the pathogenesis of atherosclerosis and its complications. PMID:20376052

  12. Endoplasmic Reticulum Stress and Cancer

    PubMed Central

    Yadav, Raj Kumar; Chae, Soo-Wan; Kim, Hyung-Ryong; Chae, Han Jung

    2014-01-01

    The endoplasmic reticulum (ER) is the principal organelle responsible for multiple cellular functions including protein folding and maturation and the maintenance of cellular homeostasis. ER stress is activated by a variety of factors and triggers the unfolded protein response (UPR), which restores homeostasis or activates cell death. Multiple studies have clarified the link between ER stress and cancer, and particularly the involvement of the UPR. The UPR seems to adjust the paradoxical microenvironment of cancer and, as such, is one of resistance mechanisms against cancer therapy. This review describes the activity of different UPRs involved in tumorigenesis and resistance to cancer therapy. PMID:25337575

  13. Roughness and function

    NASA Astrophysics Data System (ADS)

    Thomas, T. R.

    2014-01-01

    A function map is used to locate applications of roughness in separation-velocity space. The importance of roughness in contact mechanics is demonstrated and versions of the plasticity index are introduced and compared. Case studies of roughness and function are presented from tribology and the life sciences. Tribological examples are taken from the automotive industry and include the manufacture of vehicle bodies, and drive train tribology, particularly cylinder liner, cam and gearbox friction and wear. From the life sciences, problems of prosthetic fixation and tribology are shown to depend on roughness. The interaction of haptics and surface finish is described and illustrated. A number of other areas of application are listed. Finally the likely future importance of structured surfaces is discussed.

  14. Fault Roughness Records Strength

    NASA Astrophysics Data System (ADS)

    Brodsky, E. E.; Candela, T.; Kirkpatrick, J. D.

    2014-12-01

    Fault roughness is commonly ~0.1-1% at the outcrop exposure scale. More mature faults are smoother than less mature ones, but the overall range of roughness is surprisingly limited which suggests dynamic control. In addition, the power spectra of many exposed fault surfaces follow a single power law over scales from millimeters to 10's of meters. This is another surprising observation as distinct structures such as slickenlines and mullions are clearly visible on the same surfaces at well-defined scales. We can reconcile both observations by suggesting that the roughness of fault surfaces is controlled by the maximum strain that can be supported elastically in the wallrock. If the fault surface topography requires more than 0.1-1% strain, it fails. Invoking wallrock strength explains two additional observations on the Corona Heights fault for which we have extensive roughness data. Firstly, the surface is isotropic below a scale of 30 microns and has grooves at larger scales. Samples from at least three other faults (Dixie Valley, Mount St. Helens and San Andreas) also are isotropic at scales below 10's of microns. If grooves can only persist when the walls of the grooves have a sufficiently low slope to maintain the shape, this scale of isotropy can be predicted based on the measured slip perpendicular roughness data. The observed 30 micron scale at Corona Heights is consistent with an elastic strain of 0.01 estimated from the observed slip perpendicular roughness with a Hurst exponent of 0.8. The second observation at Corona Heights is that slickenlines are not deflected around meter-scale mullions. Yielding of these mullions at centimeter to meter scale is predicted from the slip parallel roughness as measured here. The success of the strain criterion for Corona Heights supports it as the appropriate control on fault roughness. Micromechanically, the criterion implies that failure of the fault surface is a continual process during slip. Macroscopically, the

  15. Mesoscale roughness of Venus

    NASA Technical Reports Server (NTRS)

    Garvin, J. B.; Frawley, James J.

    1994-01-01

    The global distribution of multi-kilometer (approx. 9 km) length scale 'roughness' (hereafter mesoscale roughness or MR) on Venus can be estimated from the Magellan global altimetry dataset (GxDR) and then compared with MR data derived for Earth from 5' ETOP5 data and for Mars (from USGS Mars DTM dataset). The mesoscale roughness parameter (MR) represents the RMS variance in meters of the actual planetary surface topography relative to the best fitting tangent plane defined on the basis of a 3x3 pixel sliding window. The best-fit plane was computed using a least-squares solution which minimizes delta H, the sum of the squares of the differences between the 9 local elevation values (H(sub i)), and the elevation of best-fit plane at the same grid location. Using the best-fit plane and delta H, we have computed the RMS 'roughness' var(delta R), where this parameter is always minimized on the basis of its calculation using least squares. We have called this 'ruggedness' parameter the Mesoscale Roughness (MR) because it is directly related to the high-frequency variance of topography after mesoscale slopes and tilts (i.e., for Venus, the baseline over which MR is computed (dx) is approx. 8.8 km and dx for Earth is approx. 9.3 km) are removed. As such, MR represents the degree to which a planetary surface is more rugged than approximately 10 km scale facets or tilts. It should not be confused with the radar 'RMS Roughness' parameter computed at 0.1 to 10 m length scales on the basis of the Magellan radar altimeter echo. We will use our MR parameter to investigate the global ruggedness properties of Venus as they relate to geological provinces and in comparison with the spatial pattern of MR for Earth and Mars.

  16. Endoplasmic reticulum aminopeptidases: biochemistry, physiology and pathology.

    PubMed

    Hattori, Akira; Tsujimoto, Masafumi

    2013-09-01

    The human endoplasmic reticulum aminopeptidase (ERAP) 1 and 2 proteins were initially identified as homologues of human placental leucine aminopeptidase/insulin-regulated aminopeptidase. They are categorized as a unique class of proteases based on their subcellular localization on the luminal side of the endoplasmic reticulum. ERAPs play an important role in the N-terminal processing of the antigenic precursors that are presented on the major histocompatibility complex (MHC) class I molecules. ERAPs are also implicated in the regulation of a wide variety of physiological phenomena and pathogenic conditions. In this review, the current knowledge on ERAPs is summarized. PMID:23946506

  17. Random rough surface photofabrication

    NASA Astrophysics Data System (ADS)

    Brissonneau, Vincent; Escoubas, Ludovic; Flory, François; Berginc, Gérard

    2011-10-01

    Random rough surfaces are of primary interest for their optical properties: reducing reflection at the interface or obtaining specific scattering diagram for example. Thus controlling surface statistics during the fabrication process paves the way to original and specific behaviors of reflected optical waves. We detail an experimental method allowing the fabrication of random rough surfaces showing tuned statistical properties. A two-step photoresist exposure process was developed. In order to initiate photoresist polymerization, an energy threshold needs to be reached by light exposure. This energy is brought by a uniform exposure equipment comprising UV-LEDs. This pre-exposure is studied by varying parameters such as optical power and exposure time. The second step consists in an exposure based on the Gray method.1 The speckle pattern of an enlarged scattered laser beam is used to insolate the photoresist. A specific photofabrication bench using an argon ion laser was implemented. Parameters such as exposure time and distances between optical components are discussed. Then, we describe how we modify the speckle-based exposure bench to include a spatial light modulator (SLM). The SLM used is a micromirror matrix known as Digital Micromirror Device (DMD) which allows spatial modulation by displaying binary images. Thus, the spatial beam shape can be tuned and so the speckle pattern on the photoresist is modified. As the photoresist photofabricated surface is correlated to the speckle pattern used to insolate, the roughness parameters can be adjusted.

  18. Peptidyl prolyl cis-trans-isomerase activity associated with the lumen of the endoplasmic reticulum.

    PubMed Central

    Bose, S; Freedman, R B

    1994-01-01

    Peptidyl prolyl cis-trans-isomerase (PPI) activity was detected in microsomal fractions from bovine and rat liver. Extensive washing, proteinase and sonication treatments indicated that although some of this activity was due to adsorbed cytosolic enzymes, there was also an active but latent microsomal PPI activity. Density-gradient subfractionation indicated that activity was associated with vesicles derived from both the rough and the smooth endoplasmic reticulum (ER), suggesting that the activity was located within the ER lumen. The luminal PPI activity was inhibited by cyclosporin A and was active towards an unfolded protein substrate as well as towards the standard peptide substrate. PMID:8010971

  19. Determination of Joint Roughness Coefficients Using Roughness Parameters

    NASA Astrophysics Data System (ADS)

    Jang, Hyun-Sic; Kang, Seong-Seung; Jang, Bo-An

    2014-11-01

    This study used precisely digitized standard roughness profiles to determine roughness parameters such as statistical and 2D discontinuity roughness, and fractal dimensions. Our methods were based on the relationship between the joint roughness coefficient (JRC) values and roughness parameters calculated using power law equations. Statistical and 2D roughness parameters, and fractal dimensions correlated well with JRC values, and had correlation coefficients of over 0.96. However, all of these relationships have a 4th profile (JRC 6-8) that deviates by more than ±5 % from the JRC values given in the standard roughness profiles. This indicates that this profile is statistically different than the others. We suggest that fractal dimensions should be measured within the entire range of the divider, instead of merely measuring values within a suitable range. Normalized intercept values also correlated with the JRC values, similarly to the fractal dimension values discussed above. The root mean square first derivative values, roughness profile indexes, 2D roughness parameter, and fractal dimension values decreased as the sampling interval increased. However, the structure function values increased very rapidly with increasing sampling intervals. This indicates that the roughness parameters are not independent of the sampling interval, and that the different relationships between the JRC values and these roughness parameters are dependent on the sampling interval.

  20. RELATIONSHIP BETWEEN THE AERODYNAMIC ROUGHNESS LENGTH AND THE ROUGHNESS DENSITY IN CASES OF LOW ROUGHNESS DENSITY

    EPA Science Inventory

    This paper presents measurements of roughness length performed in a wind tunnel for low roughness density. The experiments were performed with both compact and porous obstacles (clusters), in order to simulate the behavior of sparsely vegetated surfaces.

  1. Endoplasmic Reticulum Stress and Associated ROS

    PubMed Central

    Zeeshan, Hafiz Maher Ali; Lee, Geum Hwa; Kim, Hyung-Ryong; Chae, Han-Jung

    2016-01-01

    The endoplasmic reticulum (ER) is a fascinating network of tubules through which secretory and transmembrane proteins enter unfolded and exit as either folded or misfolded proteins, after which they are directed either toward other organelles or to degradation, respectively. The ER redox environment dictates the fate of entering proteins, and the level of redox signaling mediators modulates the level of reactive oxygen species (ROS). Accumulating evidence suggests the interrelation of ER stress and ROS with redox signaling mediators such as protein disulfide isomerase (PDI)-endoplasmic reticulum oxidoreductin (ERO)-1, glutathione (GSH)/glutathione disuphide (GSSG), NADPH oxidase 4 (Nox4), NADPH-P450 reductase (NPR), and calcium. Here, we reviewed persistent ER stress and protein misfolding-initiated ROS cascades and their significant roles in the pathogenesis of multiple human disorders, including neurodegenerative diseases, diabetes mellitus, atherosclerosis, inflammation, ischemia, and kidney and liver diseases. PMID:26950115

  2. Quantitative proteomic survey of endoplasmic reticulum in mouse liver.

    PubMed

    Song, Yanping; Jiang, Ying; Ying, Wantao; Gong, Yan; Yan, Yujuan; Yang, Dong; Ma, Jie; Xue, Xiaofang; Zhong, Fan; Wu, Songfeng; Hao, Yunwei; Sun, Aihua; Li, Tao; Sun, Wei; Wei, Handong; Zhu, Yunping; Qian, Xiaohong; He, Fuchu

    2010-03-01

    To gain a better understanding of the critical function of the endoplasmic reticulum (ER) in liver, we carried out a proteomic survey of mouse liver ER. The ER proteome was profiled with a new three-dimensional, gel-based strategy. From 6152 and 6935 MS spectra, 903 and 1042 proteins were identified with at least two peptides matches at 95% confidence in the rough (r) and smooth (s) ER, respectively. Comparison of the rER and sER proteomes showed that calcium-binding proteins are significantly enriched in the sER suggesting that the ion-binding function of the ER is compartmentalized. Comparison of the rat and mouse ER proteomes showed that 662 proteins were common to both, comprising 53.5% and 49.3% of those proteomes, respectively. We proposed that these proteins were stably expressed proteins that were essential for the maintenance of ER function. GO annotation with a hypergeometric model proved this hypothesis. Unexpectedly, 210 unknown proteins and some proteins previously reported to occur in the cytosol were highly enriched in the ER. This study provides a reference map for the ER proteome of liver. Identification of new ER proteins will enhance our current understanding of the ER and also suggest new functions for this organelle. PMID:20073521

  3. Optical roughness measurements on specially designed roughness standards

    NASA Astrophysics Data System (ADS)

    Danzl, R.; Helmli, F.; Rubert, P.; Prantl, M.

    2008-09-01

    The measurement of surface texture is one of the most common and important ways to judge the quality of a technical surface. In order to verify whether a metrology device is able to measure certain types of roughness accurately, various roughness standards with calibrated roughness values are available. While almost all roughness standards produced so far have been designed for tactile systems we demonstrate how the optical metrology device InfiniteFocus can be applied to special roughness standards that have been artificially roughened. Experiments are performed on standards with periodic structure and the results of the optical system are compared to the calibrated values obtained by tactile systems with different tip radius. Additionally the profile-based measurements are compared to area-based measurements conform to a recently developed ISO standard draft. Finally roughness measurements on real surfaces are presented.

  4. Roughness characteristics of natural channels

    USGS Publications Warehouse

    Barnes, Harry Hawthorne

    1967-01-01

    Color photographs and descriptive data are presented for 50 stream channels for which roughness coefficients have been determined. All hydraulic computations involving flow in open channels require an evaluation of the roughness characteristics of the channel. In the absence of a satisfactory quantitative procedure this evaluation remains chiefly an art. The ability to evaluate roughness coefficients must be developed through experience. One means of gaining this experience is by examining and becoming acquainted with the appearance of some typical channels whose roughness coefficients are known. The photographs and data contained in this report represent a wide range of channel conditions. Familiarity with the appearance, geometry, and roughness characteristics of these channels will improve the engineer's ability to select roughness coefficients for other channels .

  5. Solvation forces between rough surfaces

    SciTech Connect

    Frink, L.J.; van Swol, F.

    1998-04-01

    We investigate the role of surface roughness on solvation forces and solvation free energies. Roughness is introduced by dividing a surface into an array of square tiles that are then randomly displaced in the direction perpendicular to the wall. The integrated wall strength of these tiled surfaces is independent of the surface roughness and hence this class of rough walls is ideally suited for isolating roughness effects. We use grand canonical Monte Carlo simulations of a Lennard-Jones fluid confined in a slit pore with rough walls to generate the solvation interactions as a function of roughness, tile size, and surface area. The simulation data are compared to a simple superposition approximation of smooth wall solvation interactions (obtained from simulation or density functional theory), based on a distribution of wall separations. We find that this approximation provides a surprisingly accurate route to the solvation interaction of rough surfaces. In general, increased roughness leads to a reduction of oscillations in the solvation forces and surface free energies. However, nonmonotonic behavior of the oscillation amplitude with roughness can be observed for finite surfaces. The washing out of the oscillations found for large surface roughness produces a solvation force that exhibits a broad repulsive peak with separation. The broad repulsion is a consequence of the resistance to squeezing out fluid from the smallest gaps between two opposing rough surfaces. It is as much a reflection of packing effects as are the solvation oscillations for perfectly smooth pores. In addition, we present results for patterned and undulating surfaces produced by an analogous modification of the one-body external field for smooth walls. Finally, we discuss the implications of our results for a number of experimental systems including self-assembled monolayers, microporous materials, protein solutions, and DNA crystals. {copyright} {ital 1998 American Institute of Physics.}

  6. Roughness Measurement of Dental Materials

    NASA Astrophysics Data System (ADS)

    Shulev, Assen; Roussev, Ilia; Karpuzov, Simeon; Stoilov, Georgi; Ignatova, Detelina; See, Constantin von; Mitov, Gergo

    2016-06-01

    This paper presents a roughness measurement of zirconia ceramics, widely used for dental applications. Surface roughness variations caused by the most commonly used dental instruments for intraoral grinding and polishing are estimated. The applied technique is simple and utilizes the speckle properties of the scattered laser light. It could be easily implemented even in dental clinic environment. The main criteria for roughness estimation is the average speckle size, which varies with the roughness of zirconia. The algorithm used for the speckle size estimation is based on the normalized autocorrelation approach.

  7. Proliferation of smooth endoplasmic reticulum and induction of microsomal drug-metabolizing enzymes after ether or halothane.

    PubMed

    Ross, W T; Cardell, R R

    1978-05-01

    Hepatic drug-metabolizing enzymes and hepatic ultrastructure were studied in rats after two hours of anesthesia with 1 MAC halothane or diethyl ether. Twelve hours after cessation of either anesthetic smooth endoplasmic reticulum was increased in centrilobular but not in periportal hepatocytes. This change persisted at 24- and 36-hour sampling times. Microsomal cytochrome P450 and cytochrome b5 decreased after halothane anesthesia (by 7 to 20 per cent of control). Diethyl ether caused increased cytochrome P450 and cytochrome b5 (27 and 18 per cent, respectively) at the 36-hour sampling time. NADPH cytochrome c reductase did not change significantly after either agent. The authors interpret these results to mean that both agents promote conversion of rough endoplasmic reticulum to smooth endoplasmic reticulum or, alternatively, that the anesthetics decrease degradation of smooth endoplasmic membranes. Since only ether caused an increase in the microsomal content of enzymes of the drug-metabolizing enzyme system, it is concluded that these two anesthetics act on hepatic cells by dissimilar mechanisms. PMID:646150

  8. Generalizing roughness: experiments with flow-oriented roughness

    NASA Astrophysics Data System (ADS)

    Trevisani, Sebastiano

    2015-04-01

    Surface texture analysis applied to High Resolution Digital Terrain Models (HRDTMs) improves the capability to characterize fine-scale morphology and permits the derivation of useful morphometric indexes. An important indicator to be taken into account in surface texture analysis is surface roughness, which can have a discriminant role in the detection of different geomorphic processes and factors. The evaluation of surface roughness is generally performed considering it as an isotropic surface parameter (e.g., Cavalli, 2008; Grohmann, 2011). However, surface texture has often an anisotropic character, which means that surface roughness could change according to the considered direction. In some applications, for example involving surface flow processes, the anisotropy of roughness should be taken into account (e.g., Trevisani, 2012; Smith, 2014). Accordingly, we test the application of a flow-oriented directional measure of roughness, computed considering surface gravity-driven flow. For the calculation of flow-oriented roughness we use both classical variogram-based roughness (e.g., Herzfeld,1996; Atkinson, 2000) as well as an ad-hoc developed robust modification of variogram (i.e. MAD, Trevisani, 2014). The presented approach, based on a D8 algorithm, shows the potential impact of considering directionality in the calculation of roughness indexes. The use of flow-oriented roughness could improve the definition of effective proxies of impedance to flow. Preliminary results on the integration of directional roughness operators with morphometric-based models, are promising and can be extended to more complex approaches. Atkinson, P.M., Lewis, P., 2000. Geostatistical classification for remote sensing: an introduction. Computers & Geosciences 26, 361-371. Cavalli, M. & Marchi, L. 2008, "Characterization of the surface morphology of an alpine alluvial fan using airborne LiDAR", Natural Hazards and Earth System Science, vol. 8, no. 2, pp. 323-333. Grohmann, C

  9. N-Linked Protein Glycosylation in the Endoplasmic Reticulum

    PubMed Central

    Breitling, Jörg; Aebi, Markus

    2013-01-01

    The attachment of glycans to asparagine residues of proteins is an abundant and highly conserved essential modification in eukaryotes. The N-glycosylation process includes two principal phases: the assembly of a lipid-linked oligosaccharide (LLO) and the transfer of the oligosaccharide to selected asparagine residues of polypeptide chains. Biosynthesis of the LLO takes place at both sides of the endoplasmic reticulum (ER) membrane and it involves a series of specific glycosyltransferases that catalyze the assembly of the branched oligosaccharide in a highly defined way. Oligosaccharyltransferase (OST) selects the Asn-X-Ser/Thr consensus sequence on polypeptide chains and generates the N-glycosidic linkage between the side-chain amide of asparagine and the oligosaccharide. This ER-localized pathway results in a systemic modification of the proteome, the basis for the Golgi-catalyzed modification of the N-linked glycans, generating the large diversity of N-glycoproteome in eukaryotic cells. This article focuses on the processes in the ER. Based on the highly conserved nature of this pathway we concentrate on the mechanisms in the eukaryotic model organism Saccharomyces cerevisiae. PMID:23751184

  10. Does surface roughness amplify wetting?

    SciTech Connect

    Malijevský, Alexandr

    2014-11-14

    Any solid surface is intrinsically rough on the microscopic scale. In this paper, we study the effect of this roughness on the wetting properties of hydrophilic substrates. Macroscopic arguments, such as those leading to the well-known Wenzel's law, predict that surface roughness should amplify the wetting properties of such adsorbents. We use a fundamental measure density functional theory to demonstrate the opposite effect from roughness for microscopically corrugated surfaces, i.e., wetting is hindered. Based on three independent analyses we show that microscopic surface corrugation increases the wetting temperature or even makes the surface hydrophobic. Since for macroscopically corrugated surfaces the solid texture does indeed amplify wetting there must exist a crossover between two length-scale regimes that are distinguished by opposite response on surface roughening. This demonstrates how deceptive can be efforts to extend the thermodynamical laws beyond their macroscopic territory.

  11. Measuring Roughnesses Of Optical Surfaces

    NASA Technical Reports Server (NTRS)

    Coulter, Daniel R.; Al-Jumaily, Gahnim A.; Raouf, Nasrat A.; Anderson, Mark S.

    1994-01-01

    Report discusses use of scanning tunneling microscopy and atomic force microscopy to measure roughnesses of optical surfaces. These techniques offer greater spatial resolution than other techniques. Report notes scanning tunneling microscopes and atomic force microscopes resolve down to 1 nm.

  12. Radar-aeolian roughness project

    NASA Technical Reports Server (NTRS)

    Greeley, Ronald; Dobrovolskis, A.; Gaddis, L.; Iversen, J. D.; Lancaster, N.; Leach, Rodman N.; Rasnussen, K.; Saunders, S.; Vanzyl, J.; Wall, S.

    1991-01-01

    The objective is to establish an empirical relationship between measurements of radar, aeolian, and surface roughness on a variety of natural surfaces and to understand the underlying physical causes. This relationship will form the basis for developing a predictive equation to derive aeolian roughness from radar backscatter. Results are given from investigations carried out in 1989 on the principal elements of the project, with separate sections on field studies, radar data analysis, laboratory simulations, and development of theory for planetary applications.

  13. Audiotactile interactions in roughness perception.

    PubMed

    Guest, Steve; Catmur, Caroline; Lloyd, Donna; Spence, Charles

    2002-09-01

    The sounds produced when we touch textured surfaces frequently provide information regarding the structure of those surfaces. It has recently been demonstrated that the perception of the texture of the hands can be modified simply by manipulating the frequency content of such touch-related sounds. We investigated whether similar auditory manipulations change people's perception of the roughness of abrasive surfaces (experiment 1). Participants were required to make speeded, forced-choice discrimination responses regarding the roughness of a series of abrasive samples which they touched briefly. Analysis of discrimination errors verified that tactile roughness perception was modulated by the frequency content of the auditory feedback. Specifically, attenuating high frequencies led to a bias towards an increased perception of tactile smoothness. In experiment 2, we replicated the rubbing-hands manipulation of previous experimenters while participants rated either the perceived roughness or wetness of their hands. The wetness scale data replicated the results in the literature, while the roughness scale data replicated the result from experiment 1. A final experiment showed that delaying the auditory feedback from the hand-rubbing reduced the magnitude of this parchment-skin illusion. These experiments demonstrate the dramatic effect that auditory frequency manipulations can have on the perceived tactile roughness and moistness of surfaces, and are consistent with the proposal that different auditory perceptual dimensions may have varying salience for different surfaces. PMID:12195518

  14. Roughness reduction on aspheric surfaces

    NASA Astrophysics Data System (ADS)

    Kiontke, S.; Kokot, Sebastian

    2015-02-01

    For a lot of applications like spectrometer and high power laser roughness as an important parameter has been discussed over and over again. Especially for high power systems the surface quality is crucial for determining the damage threshold and therefore the field of application. Above that, it has often been difficult to compare roughness measurements because of different measurement methods and the usage of filters and surface fits. Measurement results differ significantly depending on filters and especially on the measured surface size. Insights will be given how values behave depending on the quality of surface and the size of measured area. Many applications require a high quality of roughness in order to reduce scattering. Some of them in order to prevent from damage like high power laser applications. Others like spectrometers seek to increase the signal-to-noise ratio. Most of them have already been built with spherical surfaces. With higher demands on efficiency and more sophisticated versions aspherical surfaces need to be employed. Therefore, the high requirement in roughness known from spherical surfaces is also needed on aspherical surfaces. For one thing, the constant change of curvature of an aspherical surface accounts for the superior performance, for another thing, it prevents from using classical polishing technics, which guarantied this low roughness. New methods need to be qualified. In addition, also results of a new manufacturing process will be shown allowing low roughness on aspheric even with remarkable departure from the best fit sphere.

  15. Nodal endoplasmic reticulum, a specialized form of endoplasmic reticulum found in gravity-sensing root tip columella cells

    NASA Technical Reports Server (NTRS)

    Zheng, H. Q.; Staehelin, L. A.

    2001-01-01

    The endoplasmic reticulum (ER) of columella root cap cells has been postulated to play a role in gravity sensing. We have re-examined the ultrastructure of columella cells in tobacco (Nicotiana tabacum) root tips preserved by high-pressure freezing/freeze-substitution techniques to gain more precise information about the organization of the ER in such cells. The most notable findings are: the identification of a specialized form of ER, termed "nodal ER," which is found exclusively in columella cells; the demonstration that the bulk of the ER is organized in the form of a tubular network that is confined to a peripheral layer under the plasma membrane; and the discovery that this ER-rich peripheral region excludes Golgi stacks, vacuoles, and amyloplasts but not mitochondria. Nodal ER domains consist of an approximately 100-nm-diameter central rod composed of oblong subunits to which usually seven sheets of rough ER are attached along their margins. These domains form patches at the interface between the peripheral ER network and the ER-free central region of the cells, and they occupy defined positions within central and flanking columella cells. Over one-half of the nodal ER domains are located along the outer tangential walls of the flanking cells. Cytochalasin D and latrunculin A cause an increase in size and a decrease in numbers of nodal ER domains. We postulate that the nodal ER membranes locally modulate the gravisensing signals produced by the sedimenting amyloplasts, and that the confinement of all ER membranes to the cell periphery serves to enhance the sedimentability of the amyloplasts in the central region of columella cells.

  16. Endoplasmic reticulum: ER stress regulates mitochondrial bioenergetics

    PubMed Central

    Bravo, Roberto; Gutierrez, Tomás; Paredes, Felipe; Gatica, Damián; Rodriguez, Andrea E.; Pedrozo, Zully; Chiong, Mario; Parra, Valentina; Quest, Andrew F.G.; Rothermel, Beverly A.; Lavandero, Sergio

    2014-01-01

    Endoplasmic reticulum (ER) stress activates an adaptive unfolded protein response (UPR) that facilitates cellular repair, however, under prolonged ER stress, the UPR can ultimately trigger apoptosis thereby terminating damaged cells. The molecular mechanisms responsible for execution of the cell death program are relatively well characterized, but the metabolic events taking place during the adaptive phase of ER stress remain largely undefined. Here we discuss emerging evidence regarding the metabolic changes that occur during the onset of ER stress and how ER influences mitochondrial function through mechanisms involving calcium transfer, thereby facilitating cellular adaptation. Finally, we highlight how dysregulation of ER–mitochondrial calcium homeostasis during prolonged ER stress is emerging as a novel mechanism implicated in the onset of metabolic disorders. PMID:22064245

  17. Endoplasmic reticulum: ER stress regulates mitochondrial bioenergetics.

    PubMed

    Bravo, Roberto; Gutierrez, Tomás; Paredes, Felipe; Gatica, Damián; Rodriguez, Andrea E; Pedrozo, Zully; Chiong, Mario; Parra, Valentina; Quest, Andrew F G; Rothermel, Beverly A; Lavandero, Sergio

    2012-01-01

    Endoplasmic reticulum (ER) stress activates an adaptive unfolded protein response (UPR) that facilitates cellular repair, however, under prolonged ER stress, the UPR can ultimately trigger apoptosis thereby terminating damaged cells. The molecular mechanisms responsible for execution of the cell death program are relatively well characterized, but the metabolic events taking place during the adaptive phase of ER stress remain largely undefined. Here we discuss emerging evidence regarding the metabolic changes that occur during the onset of ER stress and how ER influences mitochondrial function through mechanisms involving calcium transfer, thereby facilitating cellular adaptation. Finally, we highlight how dysregulation of ER-mitochondrial calcium homeostasis during prolonged ER stress is emerging as a novel mechanism implicated in the onset of metabolic disorders. PMID:22064245

  18. Membrane Protein Insertion at the Endoplasmic Reticulum

    PubMed Central

    Shao, Sichen; Hegde, Ramanujan S.

    2014-01-01

    Integral membrane proteins of the cell surface and most intracellular compartments of eukaryotic cells are assembled at the endoplasmic reticulum. Two highly conserved and parallel pathways mediate membrane protein targeting to and insertion into this organelle. The classical cotranslational pathway, utilized by most membrane proteins, involves targeting by the signal recognition particle followed by insertion via the Sec61 translocon. A more specialized posttranslational pathway, employed by many tail-anchored membrane proteins, is composed of entirely different factors centered around a cytosolic ATPase termed TRC40 or Get3. Both of these pathways overcome the same biophysical challenges of ferrying hydrophobic cargo through an aqueous milieu, selectively delivering it to one among several intracellular membranes and asymmetrically integrating its transmembrane domain(s) into the lipid bilayer. Here, we review the conceptual and mechanistic themes underlying these core membrane protein insertion pathways, the complexities that challenge our understanding, and future directions to over-come these obstacles. PMID:21801011

  19. Endoplasmic-Reticulum Calcium Depletion and Disease

    PubMed Central

    Mekahli, Djalila; Bultynck, Geert; Parys, Jan B.; De Smedt, Humbert; Missiaen, Ludwig

    2011-01-01

    The endoplasmic reticulum (ER) as an intracellular Ca2+ store not only sets up cytosolic Ca2+ signals, but, among other functions, also assembles and folds newly synthesized proteins. Alterations in ER homeostasis, including severe Ca2+ depletion, are an upstream event in the pathophysiology of many diseases. On the one hand, insufficient release of activator Ca2+ may no longer sustain essential cell functions. On the other hand, loss of luminal Ca2+ causes ER stress and activates an unfolded protein response, which, depending on the duration and severity of the stress, can reestablish normal ER function or lead to cell death. We will review these various diseases by mainly focusing on the mechanisms that cause ER Ca2+ depletion. PMID:21441595

  20. Barriers to uniformity within the endoplasmic reticulum.

    PubMed

    Wong, Andrew K O; Chao, Jesse T; Loewen, Christopher J R

    2014-08-01

    Differentiating the endoplasmic reticulum (ER) into different physical domains may help the ER spatially regulate its many functions. For example, ER sheets are highly decorated with ribosomes for protein synthesis, whereas tubules usually correspond to smooth ER. Hence, ER morphology may play direct roles in functional diversification within the ER. The ER also makes direct physical contacts with other organelles, called ER junctions, enabling further functional diversification through input from external sources. In yeast, an ER diffusion barrier has now been discovered at the bud neck that compartmentalizes the ER into bud and mother diffusion domains by restricting the lateral diffusion of ER membrane proteins. Therefore, diffusion barriers also likely contribute to functional diversification within the ER by creating suites of molecular factors within ER diffusion domains. PMID:24732434

  1. Protein Secretion and the Endoplasmic Reticulum

    PubMed Central

    Benham, Adam M.

    2012-01-01

    In a complex multicellular organism, different cell types engage in specialist functions, and as a result, the secretory output of cells and tissues varies widely. Whereas some quiescent cell types secrete minor amounts of proteins, tissues like the pancreas, producing insulin and other hormones, and mature B cells, producing antibodies, place a great demand on their endoplasmic reticulum (ER). Our understanding of how protein secretion in general is controlled in the ER is now quite sophisticated. However, there remain gaps in our knowledge, particularly when applying insight gained from model systems to the more complex situations found in vivo. This article describes recent advances in our understanding of the ER and its role in preparing proteins for secretion, with an emphasis on glycoprotein quality control and pathways of disulfide bond formation. PMID:22700933

  2. Endoplasmic reticulum stress in brain ischemia.

    PubMed

    Su, Yingchao; Li, Feng

    2016-08-01

    Endoplasmic reticulum (ER) stress is an intricate mechanism that mediates numerous responses during brain ischemia, thus being essential to determine the fate of neurons. In recent years, studies of the mechanisms of brain ischemic injury have centered on ER stress, glutamate excitotoxicity, dysfunction of mitochondria, inflammatory reactions, calcium overload and death receptor pathways. The role of ER stress is highly important. In addition to resulting in neuronal cell death through calcium toxicity and apoptotic pathways, ER stress also triggers a series of adaptive responses including unfolded protein response (UPR), autophagy, the expression of pro-survival proteins and the enhancement of ER self-repair ability, leading to less ischemic brain damage. This paper provides an overview of recent advances in understanding of the relations between ER stress and brain ischemia. PMID:26289799

  3. An endoplasmic reticulum-specific cyclophilin.

    PubMed Central

    Hasel, K W; Glass, J R; Godbout, M; Sutcliffe, J G

    1991-01-01

    Cyclophilin is a ubiquitously expressed cytosolic peptidyl-prolyl cis-trans isomerase that is inhibited by the immunosuppressive drug cyclosporin A. A degenerate oligonucleotide based on a conserved cyclophilin sequence was used to isolate cDNA clones representing a ubiquitously expressed mRNA from mice and humans. This mRNA encodes a novel 20-kDa protein, CPH2, that shares 64% sequence identity with cyclophilin. Bacterially expressed CPH2 binds cyclosporin A and is a cyclosporin A-inhibitable peptidyl-prolyl cis-trans isomerase. Cell fractionation of rat liver followed by Western blot (immunoblot) analysis indicated that CPH2 is not cytosolic but rather is located exclusively in the endoplasmic reticulum. These results suggest that cyclosporin A mediates its effect on cells through more than one cyclophilin and that cyclosporin A-induced misfolding of T-cell membrane proteins normally mediated by CPH2 plays a role in immunosuppression. Images PMID:1710767

  4. Nonvesicular lipid transfer from the endoplasmic reticulum.

    PubMed

    Lev, Sima

    2012-01-01

    The transport of lipids from their synthesis site at the endoplasmic reticulum (ER) to different target membranes could be mediated by both vesicular and nonvesicular transport mechanisms. Nonvesicular lipid transport appears to be the major transport route of certain lipid species, and could be mediated by either spontaneous lipid transport or by lipid-transfer proteins (LTPs). Although nonvesicular lipid transport has been extensively studied for more than four decades, its underlying mechanism, advantage and regulation, have not been fully explored. In particular, the function of LTPs and their involvement in intracellular lipid movement remain largely controversial. In this article, we describe the pathways by which lipids are synthesized at the ER and delivered to different cellular membranes, and discuss the role of LTPs in lipid transport both in vitro and in intact cells. PMID:23028121

  5. Endoplasmic Reticulum Stress and Ethanol Neurotoxicity.

    PubMed

    Yang, Fanmuyi; Luo, Jia

    2015-01-01

    Ethanol abuse affects virtually all organ systems and the central nervous system (CNS) is particularly vulnerable to excessive ethanol exposure. Ethanol exposure causes profound damages to both the adult and developing brain. Prenatal ethanol exposure induces fetal alcohol spectrum disorders (FASD) which is associated with mental retardation and other behavioral deficits. A number of potential mechanisms have been proposed for ethanol-induced brain damage; these include the promotion of neuroinflammation, interference with signaling by neurotrophic factors, induction of oxidative stress, modulation of retinoid acid signaling, and thiamine deficiency. The endoplasmic reticulum (ER) regulates posttranslational protein processing and transport. The accumulation of unfolded or misfolded proteins in the ER lumen triggers ER stress and induces unfolded protein response (UPR) which are mediated by three transmembrane ER signaling proteins: pancreatic endoplasmic reticulum kinase (PERK), inositol-requiring enzyme 1 (IRE1), and activating transcription factor 6 (ATF6). UPR is initiated to protect cells from overwhelming ER protein loading. However, sustained ER stress may result in cell death. ER stress has been implied in various CNS injuries, including brain ischemia, traumatic brain injury, and aging-associated neurodegeneration, such as Alzheimer's disease (AD), Huntington's disease (HD), Amyotrophic lateral sclerosis (ALS), and Parkinson's disease (PD). However, effects of ethanol on ER stress in the CNS receive less attention. In this review, we discuss recent progress in the study of ER stress in ethanol-induced neurotoxicity. We also examine the potential mechanisms underlying ethanol-mediated ER stress and the interaction among ER stress, oxidative stress and autophagy in the context of ethanol neurotoxicity. PMID:26473940

  6. Roughness effects in uncompensated antiferromagnets

    SciTech Connect

    Charilaou, M.; Hellman, F.

    2015-02-28

    Monte Carlo simulations show that roughness in uncompensated antiferromagnets decreases not just the surface magnetization but also the net magnetization and particularly strongly affects the temperature dependence. In films with step-type roughness, each step creates a new compensation front that decreases the global net magnetization. The saturation magnetization decreases non-monotonically with increasing roughness and does not scale with the surface area. Roughness in the form of surface vacancies changes the temperature-dependence of the magnetization; when only one surface has vacancies, the saturation magnetization will decrease linearly with surface occupancy, whereas when both surfaces have vacancies, the magnetization is negative and exhibits a compensation point at finite temperature, which can be tuned by controlling the occupancy. Roughness also affects the spin-texture of the surfaces due to long-range dipolar interactions and generates non-collinear spin configurations that could be used in devices to produce locally modified exchange bias. These results explain the strongly reduced magnetization found in magnetometry experiments and furthers our understanding of the temperature-dependence of exchange bias.

  7. Intrinsic membrane glycoproteins with cytosol-oriented sugars in the endoplasmic reticulum

    SciTech Connect

    Abeijon, C.; Hirschberg, C.B.

    1988-02-01

    The authors have examined the topography of N-acetylglucosamine-terminating glycoproteins in membranes from rat liver smooth and rough endoplasmic reticulum (SER and RER). It was found that some of these glycoproteins are intrinsic membrane proteins with their sugars facing the cytosolic rather than the luminal side. This conclusion was reached by using vesicles from the SER and RER that were sealed and of the same topographical orientation as in vivo. These vesicles were incubated with UDP-(/sup 14/C)galactose (which does not enter the vesicles) and saturating amounts of soluble galactosyltransferase from milk, an enzyme that does not penetrate the lumen of the vesicles and that specifically adds galactose to terminal N-acetylglucosamine in a ..beta..1-4 linkage. Radioactive galactose was mainly transferred to SER proteins of apparent molecular mass 56 and 110 kDa and to a lesser extent RER and SER proteins of apparent molecular mass 46 and 72 kDa. These proteins are intrinsic membrane proteins, based on the inability of sodium carbonate at pH 11.5 to remove them from the membranes. Studies with peptide N-glycosidase F and chemical ..beta..-elimination showed that the 56-kDa protein of the SER vesicles contained terminal N-acetylglucosamine in an O-linkage to the protein. The above results suggest that some sugars of glycoproteins in the endoplasmic reticulum may attain their final orientation in the membrane by mechanisms yet to be determined.

  8. Role of p97 and Syntaxin 5 in the Assembly of Transitional Endoplasmic Reticulum

    PubMed Central

    Roy, Line; Bergeron, John J.M.; Lavoie, Christine; Hendriks, Rob; Gushue, Jennifer; Fazel, Ali; Pelletier, Amélie; Morré, D. James; Subramaniam, V. Nathan; Hong, Wanjin; Paiement, Jacques

    2000-01-01

    Transitional endoplasmic reticulum (tER) consists of confluent rough and smooth endoplasmic reticulum (ER) domains. In a cell-free incubation system, low-density microsomes (1.17 g cc−1) isolated from rat liver homogenates reconstitute tER by Mg2+GTP- and Mg2+ATP-hydrolysis–dependent membrane fusion. The ATPases associated with different cellular activities protein p97 has been identified as the relevant ATPase. The ATP depletion by hexokinase or treatment with either N-ethylmaleimide or anti-p97 prevented assembly of the smooth ER domain of tER. High-salt washing of low-density microsomes inhibited assembly of the smooth ER domain of tER, whereas the readdition of purified p97 with associated p47 promoted reconstitution. The t-SNARE syntaxin 5 was observed within the smooth ER domain of tER, and antisyntaxin 5 abrogated formation of this same membrane compartment. Thus, p97 and syntaxin 5 regulate assembly of the smooth ER domain of tER and hence one of the earliest membrane differentiated components of the secretory pathway. PMID:10930451

  9. Recent Studies of Runway Roughness

    NASA Technical Reports Server (NTRS)

    Morris, Garland; Hall, Albert W.

    1965-01-01

    Recent studies of NASA research related to aircraft operating problems on rough runways are presented. Some of these investigations were conducted cooperatively with the airport operators, with the Federal Aviation Agency, and with the U.S. Air Force. The studies show that criteria based on power spectral levels of runway-profile data are not sufficient to define acceptable levels of runway roughness from the piloting viewpoint. Because of the large variation in response characteristics between various types of aircraft, a runway may be acceptable for some aircraft and unacceptable for others. A criterion for roughness, therefore, should be expressed in terms of aircraft response - preferably, cockpit acceleration. A criterion suggested is that the maximum vertical acceleration in the cockpit should not exceed +/- 0.4 g for sections of the runway where precise aircraft control is required.

  10. Wetting phenomena on rough substrates

    NASA Astrophysics Data System (ADS)

    Li, Hao; Kardar, Mehran

    1990-10-01

    We consider wetting phenomena in the vicinity of rough substrates. The quenched random geometry of the substrate is assumed to be a self-affine fractal with a roughness exponent of ζS. Asymptotic critical properties on approaching complete and critical wetting transitions are studied by combining the replica method with scaling and renormalization-group arguments. We find new critical behavior, controlled by a zero-temperature fixed point, when ζS exceeds the thermal roughness exponent of the emerging wetting layer. The possibility of an effective dimensional reduction due to randomness is considered. In two dimensions a number of exact results are obtained by using a many-body transfer-matrix technique.

  11. A functional equivalent of endoplasmic reticulum and Golgi in axons for secretion of locally synthesized proteins

    PubMed Central

    Merianda, Tanuja T.; Lin, Andrew C.; Lam, Joyce S.Y.; Vuppalanchi, Deepika; Willis, Dianna E.; Karin, Norman; Holt, Christine E.; Twiss, Jeffery L.

    2013-01-01

    Subcellular localization of protein synthesis provides a means to regulate the protein composition in far reaches of a cell. This localized protein synthesis gives neuronal processes autonomy to rapidly respond to extracellular stimuli. Locally synthesized axonal proteins enable neurons to respond to guidance cues and can help to initiate regeneration after injury. Most studies of axonal mRNA translation have concentrated on cytoplasmic proteins. While ultrastructural studies suggest that axons do not have rough endoplasmic reticulum or Golgi apparatus, mRNAs for transmembrane and secreted proteins localize to axons. Here, we show that growing axons with protein synthetic activity contain ER and Golgi components needed for classical protein synthesis and secretion. Isolated axons have the capacity to traffic locally synthesized proteins into secretory pathways and inhibition of Golgi function attenuates translation-dependent axonal growth responses. Finally, the capacity for secreting locally synthesized proteins in axons appears to be increased by injury. PMID:19022387

  12. Taking organelles apart, putting them back together and creating new ones: lessons from the endoplasmic reticulum.

    PubMed

    Lavoie, Christine; Roy, Line; Lanoix, Joël; Taheri, Mariam; Young, Robin; Thibault, Geneviève; Farah, Carol Abi; Leclerc, Nicole; Paiement, Jacques

    2011-06-01

    The endoplasmic reticulum (ER) is a highly dynamic organelle. It is composed of four subcompartments including nuclear envelope (NE), rough ER (rER), smooth ER (sER) and transitional ER (tER). The subcompartments are interconnected, can fragment and dissociate and are able to reassemble again. They coordinate with cell function by way of protein regulators in the surrounding cytosol. The activity of the many associated molecular machines of the ER as well as the fluid nature of the limiting membrane of the ER contribute extensively to the dynamics of the ER. This review examines the properties of the ER that permit its isolation and purification and the physiological conditions that permit reconstitution both in vitro and in vivo in normal and in disease conditions. PMID:21536318

  13. [The progress of study about endoplasmic reticulum stress in glaucoma].

    PubMed

    Hu, J; Jiang, B

    2016-03-01

    In eukaryotic cells, the most secreted proteins and membrane proteins are compounded, modified and folded into the correct structure in the endoplasmic reticulum. Only correctly folded proteins can be transported to the golgi apparatus for further processing. If the endoplasmic reticulum is insufficient to deal with the accumulation of unfolded or misfolded proteins, balance will be broken, and endoplasmic reticulum stress (ERS) will be started. To eliminate the unfolded proteins, cells will activate unfolded protein response (UPR) immediately for self-protection. If the induced ERS is strong or persistent, the UPR could not maintain the balance of homeostasis in endoplasmic reticulum. Then the ERS will lead to C/EBP homologous protein activation and initiate cell apoptosis. The continuous ERS may participate in the occurrence and development of many diseases, such as neurodegenerative diseases and type 2 diabetes. In this article, the research progress of ERS and its relationship with glaucoma is reviewed. PMID:26979122

  14. Activation of autophagy by unfolded proteins during endoplasmic reticulum stress.

    PubMed

    Yang, Xiaochen; Srivastava, Renu; Howell, Stephen H; Bassham, Diane C

    2016-01-01

    Endoplasmic reticulum stress is defined as the accumulation of unfolded proteins in the endoplasmic reticulum, and is caused by conditions such as heat or agents that cause endoplasmic reticulum stress, including tunicamycin and dithiothreitol. Autophagy, a major pathway for degradation of macromolecules in the vacuole, is activated by these stress agents in a manner dependent on inositol-requiring enzyme 1b (IRE1b), and delivers endoplasmic reticulum fragments to the vacuole for degradation. In this study, we examined the mechanism for activation of autophagy during endoplasmic reticulum stress in Arabidopsis thaliana. The chemical chaperones sodium 4-phenylbutyrate and tauroursodeoxycholic acid were found to reduce tunicamycin- or dithiothreitol-induced autophagy, but not autophagy caused by unrelated stresses. Similarly, over-expression of BINDING IMMUNOGLOBULIN PROTEIN (BIP), encoding a heat shock protein 70 (HSP70) molecular chaperone, reduced autophagy. Autophagy activated by heat stress was also found to be partially dependent on IRE1b and to be inhibited by sodium 4-phenylbutyrate, suggesting that heat-induced autophagy is due to accumulation of unfolded proteins in the endoplasmic reticulum. Expression in Arabidopsis of the misfolded protein mimics zeolin or a mutated form of carboxypeptidase Y (CPY*) also induced autophagy in an IRE1b-dependent manner. Moreover, zeolin and CPY* partially co-localized with the autophagic body marker GFP-ATG8e, indicating delivery to the vacuole by autophagy. We conclude that accumulation of unfolded proteins in the endoplasmic reticulum is a trigger for autophagy under conditions that cause endoplasmic reticulum stress. PMID:26616142

  15. Nanowetting of rough superhydrophobic surfaces

    NASA Astrophysics Data System (ADS)

    Zhang, H.; Lamb, R. N.; Cookson, D. J.

    2007-12-01

    Small angle x-ray scattering has been used to investigate the in situ immersive wetting of ultrarough surfaces which exhibit superhydrophobicity with extreme water contact angle (θA=169°). Reduced scattering contrast observed from rough surfaces when partially or totally wetted reveals significant physical differences between superhydrophobic surfaces not otherwise apparent from conventional contact angle measurements.

  16. Plant Communities of Rough Rock.

    ERIC Educational Resources Information Center

    Jacobs, Linda

    A unit of study on plants grown in the Navajo community of Rough Rock, Arizona, is presented in sketches providing the common Navajo name for the plant, a literal English translation, the English name of the plant, and the Latin name. A brief description of each plant includes where the plant grows, how the Navajos use the plant, and the color and…

  17. Estimating surface roughness using stereophotogrammetry

    NASA Astrophysics Data System (ADS)

    David, V.; Krasa, J.

    2009-04-01

    At the Department of Drainage, Irrigation and Landscape Engineering (CTU Prague) we use several mathematical models for soil erosion, sediment transport and surface runoff assessment. Here we continuously struggle for successful models parameterizations. One of the typical coefficients usually taken from literature instead of measurements is surface roughness, eg. Manning roughness (Maidment, 1993). Roughness is a key to surface runoff velocity and surface runoff depth estimation but often it is very roughly estimated. Within the COST 22 Action research we focused on estimating actual surface roughness using stereophotogrammetry. Our aim was to set up a simple low cost system useful for roughness measurements in nature conditions - mainly on agricultural fields. Our system consists of Canon EOS 400 digital camera with angle viewfinder, two robust tripods and a horizontal bar with sliding 3D tripod head. We tested different camera heights and focal distances as well as various parallaxes to obtain reasonable results. Finally we shot the surfaces from 1600 millimeters with 24 and 35 mm lens and parallaxes close to 100 mm. For 3D scene development we use Geomatica 10 GIS and its OrthoEngine module. Testing the proper system and many variables of the 3D scene modelling was an important part of the first year of the project. For these purposes we first prepared a calibrated and known 3D surface consisting of 70 by 70 cm grid and several geometrical objects of different sizes and shapes. Preparing the correct lighting conditions, finding the resolving power of the system and solving the problems with low contrast areas of measured surfaces was a time consuming but interesting task. After the system calibration we started with the actual terrain measurements. Our setup, system testing and preliminary results of the roughness computations are presented on the poster. Acknowledgement This research was acomplished within national COST project OC189 „Flood risk and its

  18. 31 CFR 592.310 - Rough diamond.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 31 Money and Finance:Treasury 3 2011-07-01 2011-07-01 false Rough diamond. 592.310 Section 592.310... ASSETS CONTROL, DEPARTMENT OF THE TREASURY ROUGH DIAMONDS CONTROL REGULATIONS General Definitions § 592.310 Rough diamond. The term rough diamond means any diamond that is unworked or simply sawn,...

  19. 31 CFR 592.310 - Rough diamond.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 31 Money and Finance:Treasury 3 2012-07-01 2012-07-01 false Rough diamond. 592.310 Section 592.310... ASSETS CONTROL, DEPARTMENT OF THE TREASURY ROUGH DIAMONDS CONTROL REGULATIONS General Definitions § 592.310 Rough diamond. The term rough diamond means any diamond that is unworked or simply sawn,...

  20. 31 CFR 592.310 - Rough diamond.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 31 Money and Finance:Treasury 3 2014-07-01 2014-07-01 false Rough diamond. 592.310 Section 592.310... ASSETS CONTROL, DEPARTMENT OF THE TREASURY ROUGH DIAMONDS CONTROL REGULATIONS General Definitions § 592.310 Rough diamond. The term rough diamond means any diamond that is unworked or simply sawn,...

  1. 31 CFR 592.310 - Rough diamond.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 31 Money and Finance:Treasury 3 2013-07-01 2013-07-01 false Rough diamond. 592.310 Section 592.310... ASSETS CONTROL, DEPARTMENT OF THE TREASURY ROUGH DIAMONDS CONTROL REGULATIONS General Definitions § 592.310 Rough diamond. The term rough diamond means any diamond that is unworked or simply sawn,...

  2. 31 CFR 592.310 - Rough diamond.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 31 Money and Finance: Treasury 3 2010-07-01 2010-07-01 false Rough diamond. 592.310 Section 592... FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY ROUGH DIAMONDS CONTROL REGULATIONS General Definitions § 592.310 Rough diamond. The term rough diamond means any diamond that is unworked or simply...

  3. Roughness of stable, armored gravel beds

    NASA Astrophysics Data System (ADS)

    Gomez, Basil

    1993-11-01

    The grain roughness of stable armored beds that formed in a laboratory flume under a range of steady flow conditions on rounded, flat and angular gravel is analyzed. Gravel roughness geometry is determined from bed surface profiles and vertical photographs. These techniques have been employed in field situations. Thus the methodology is potentially applicable to the analysis of grain roughness in natural gravel bed channels. The description of representative roughness geometry is also analogous to that used to characterize artificial roughness arrays. Armor roughness increases with increasing flow. Armored surfaces composed of angular gravel are roughest, and surfaces formed of flat gravel offer least resistance to the flow. Stable armored beds may exhibit a tendency to maximize the ratio of the shear due to drag on representative roughness elements to total shear. Roughness concentration is strongly correlated with the energy slope, and there is a linear increase in equivalent roughness height with increasing roughness concentration. The friction factor for an armored surface varies in a linear manner with representative roughness geometry. The equation defining this relation is probably similar to that used to characterize variations in the friction factor with artificial roughness geometry at low roughness concentrations. However, to reconcile the relations for artificial and natural roughness completely, it may be necessary to explicitly consider the contribution to flow resistance made by roughness shape, background roughness, and blocking in shallow flows.

  4. Endoplasmic Reticulum Stress in Endometrial Cancer

    PubMed Central

    Ulianich, Luca; Insabato, Luigi

    2014-01-01

    Endometrial cancer (EC) is a common gynecologic malignancy often diagnosed at early stage. In spite of a huge advance in our understanding of EC biology, therapeutic modalities do not have significantly changed over the past 40 years. A restricted number of genes have been reported to be mutated in EC, mediating cell proliferation and invasiveness. However, besides these alterations, few other groups and ourselves recently identified the activation of the unfolded protein response (UPR) and GRP78 increase following endoplasmic reticulum (ER) stress as mechanisms favoring growth and invasion of EC cells. Here, a concise update on currently available data in the field is presented, analyzing the crosstalk between the UPR and the main signaling pathways regulating EC cell proliferation and survival. It is evident that this is a rapidly expanding and promising issue. However, more data are very likely to yield a better understanding on the mechanisms through which EC cells can survive the low oxygen and glucose tumor microenvironment. In this perspective, the UPR and, particularly, GRP78 might constitute a novel target for the treatment of EC in combination with traditional adjuvant therapy. PMID:25593927

  5. Endoplasmic reticulum dysfunction in Alzheimer's disease.

    PubMed

    Li, Jie-Qiong; Yu, Jin-Tai; Jiang, Teng; Tan, Lan

    2015-02-01

    The endoplasmic reticulum (ER) serves many crucial cellular functions. However, when misfolded or unfolded proteins accumulated in the ER, the stress of ER will be induced. Meanwhile, the intracellular signaling network, which is called unfolded protein response, will also be activated to cope with. Those unfolded proteins can be recognized by three kinds of stress sensors which are IRE1, PERK, and ATF6. Based on lots of medical reports, ER stress in postmortem brains from Alzheimer's disease (AD) patients, animals, and vitro models have indicated that ER dysfunction might work as an important part in causing AD. In this review, we demonstrated that the effect of ER stress contributed to the pathogenesis of AD. ER stress associates almost the whole brain pathology processes which can be observed in AD, such as gene mutation of presenilin1, the abnormal clipped mRNA of presenilin2, β-amyloid production, tau phosphorylation, and cell death. The status of ER stress and unfolded protein response in the pathogenesis of AD also suggests they can be used as potential therapeutic agents. PMID:24715417

  6. Shaping the endoplasmic reticulum in vitro.

    PubMed

    Ferencz, Csilla-Maria; Guigas, Gernot; Veres, Andreas; Neumann, Brigitte; Stemmann, Olaf; Weiss, Matthias

    2016-09-01

    Organelles in eukaryotic cells often have complex shapes that deviate significantly from simple spheres. A prime example is the endoplasmic reticulum (ER) that forms an extensive network of membrane tubules in many mammalian cell types and in reconstitution assays in vitro. Despite the successful hunt for molecular determinants of ER shape we are still far from having a comprehensive understanding of ER network morphogenesis. Here, we have studied the hitherto neglected influence of the host substrate when reconstituting ER networks in vitro as compared to ER networks in vivo. In culture cells we observed cytoplasm-spanning ER networks with tubules being connected almost exclusively by three-way junctions and segment lengths being narrowly distributed around a mean length of about 1μm. In contrast, networks reconstituted from purified ER microsomes on flat glass or gel substrates of varying stiffness showed significantly broader length distributions with an up to fourfold larger mean length. Self-assembly of ER microsomes on small oil droplets, however, yielded networks that resembled more closely the native ER network of mammalian cells. We conclude from these observations that the ER microsomes' inherent self-assembly capacity is sufficient to support network formation with a native geometry if the influence of the host substrate's surface chemistry becomes negligible. We hypothesize that under these conditions the networks' preference for three-way junctions follows from creating 'starfish-shaped' vesicles when ER microsomes with a protein-induced spontaneous curvature undergo fusion. PMID:27287725

  7. Endoplasmic Reticulum Stress, Genome Damage, and Cancer

    PubMed Central

    Dicks, Naomi; Gutierrez, Karina; Michalak, Marek; Bordignon, Vilceu; Agellon, Luis B.

    2015-01-01

    Endoplasmic reticulum (ER) stress has been linked to many diseases, including cancer. A large body of work has focused on the activation of the ER stress response in cancer cells to facilitate their survival and tumor growth; however, there are some studies suggesting that the ER stress response can also mitigate cancer progression. Despite these contradictions, it is clear that the ER stress response is closely associated with cancer biology. The ER stress response classically encompasses activation of three separate pathways, which are collectively categorized the unfolded protein response (UPR). The UPR has been extensively studied in various cancers and appears to confer a selective advantage to tumor cells to facilitate their enhanced growth and resistance to anti-cancer agents. It has also been shown that ER stress induces chromatin changes, which can also facilitate cell survival. Chromatin remodeling has been linked with many cancers through repression of tumor suppressor and apoptosis genes. Interplay between the classic UPR and genome damage repair mechanisms may have important implications in the transformation process of normal cells into cancer cells. PMID:25692096

  8. Polymer Transport Near Rough Surfaces

    NASA Astrophysics Data System (ADS)

    Bloom, Moses; Whitmer, Jonathan; Luijten, Erik

    2011-03-01

    The rheology of dilute polymer solutions under confinement is important in biology, medicine, microfluidic device design, synthetic polymer processing, and even geologic porous media. However, the solution's specific interactions with the confining surface are poorly understood. This situation is exacerbated for composite nanoparticles, such as polymer/metallic hybrids. Using multi-particle collision dynamics, we find a rich array of transport regimes depending on small-scale surface roughness and the specific surface/solute interactions. These factors couple to hydrodynamic conditions, including flow strength and confinement geometry in unexpected ways. Our findings may be relevant to transport phenomena in certain rough-walled capillaries, such as the distribution of various nanoconjugates in vivo.

  9. Endoplasmic reticulum stress implicated in chronic traumatic encephalopathy.

    PubMed

    Lucke-Wold, Brandon P; Turner, Ryan C; Logsdon, Aric F; Nguyen, Linda; Bailes, Julian E; Lee, John M; Robson, Matthew J; Omalu, Bennet I; Huber, Jason D; Rosen, Charles L

    2016-03-01

    OBJECT Chronic traumatic encephalopathy is a progressive neurodegenerative disease characterized by neurofibrillary tau tangles following repetitive neurotrauma. The underlying mechanism linking traumatic brain injury to chronic traumatic encephalopathy has not been elucidated. The authors investigate the role of endoplasmic reticulum stress as a link between acute neurotrauma and chronic neurodegeneration. METHODS The authors used pharmacological, biochemical, and behavioral tools to assess the role of endoplasmic reticulum stress in linking acute repetitive traumatic brain injury to the development of chronic neurodegeneration. Data from the authors' clinically relevant and validated rodent blast model were compared with those obtained from postmortem human chronic traumatic encephalopathy specimens from a National Football League player and World Wrestling Entertainment wrestler. RESULTS The results demonstrated strong correlation of endoplasmic reticulum stress activation with subsequent tau hyperphosphorylation. Various endoplasmic reticulum stress markers were increased in human chronic traumatic encephalopathy specimens, and the endoplasmic reticulum stress response was associated with an increase in the tau kinase, glycogen synthase kinase-3β. Docosahexaenoic acid, an endoplasmic reticulum stress inhibitor, improved cognitive performance in the rat model 3 weeks after repetitive blast exposure. The data showed that docosahexaenoic acid administration substantially reduced tau hyperphosphorylation (t = 4.111, p < 0.05), improved cognition (t = 6.532, p < 0.001), and inhibited C/EBP homology protein activation (t = 5.631, p < 0.01). Additionally the data showed, for the first time, that endoplasmic reticulum stress is involved in the pathophysiology of chronic traumatic encephalopathy. CONCLUSIONS Docosahexaenoic acid therefore warrants further investigation as a potential therapeutic agent for the prevention of chronic traumatic encephalopathy. PMID

  10. Nox NADPH Oxidases and the Endoplasmic Reticulum

    PubMed Central

    Araujo, Thaís L.S.; Abrahão, Thalita B.

    2014-01-01

    Abstract Significance: Understanding isoform- and context-specific subcellular Nox reduced nicotinamide adenine dinucleotide phosphate (NADPH) oxidase compartmentalization allows relevant functional inferences. This review addresses the interplay between Nox NADPH oxidases and the endoplasmic reticulum (ER), an increasingly evident player in redox pathophysiology given its role in redox protein folding and stress responses. Recent Advances: Catalytic/regulatory transmembrane subunits are synthesized in the ER and their processing includes folding, N-glycosylation, heme insertion, p22phox heterodimerization, as shown for phagocyte Nox2. Dual oxidase (Duox) maturation also involves the regulation by ER-resident Duoxa2. The ER is the activation site for some isoforms, typically Nox4, but potentially other isoforms. Such location influences redox/Nox-mediated calcium signaling regulation via ER targets, such as sarcoendoplasmic reticulum calcium ATPase (SERCA). Growing evidence suggests that Noxes are integral signaling elements of the unfolded protein response during ER stress, with Nox4 playing a dual prosurvival/proapoptotic role in this setting, whereas Nox2 enhances proapoptotic signaling. ER chaperones such as protein disulfide isomerase (PDI) closely interact with Noxes. PDI supports growth factor-dependent Nox1 activation and mRNA expression, as well as migration in smooth muscle cells, and PDI overexpression induces acute spontaneous Nox activation. Critical Issues: Mechanisms of PDI effects include possible support of complex formation and RhoGTPase activation. In phagocytes, PDI supports phagocytosis, Nox activation, and redox-dependent interactions with p47phox. Together, the results implicate PDI as possible Nox organizer. Future Directions: We propose that convergence between Noxes and ER may have evolutive roots given ER-related functional contexts, which paved Nox evolution, namely calcium signaling and pathogen killing. Overall, the interplay between

  11. Sensing roughness and polish direction

    NASA Astrophysics Data System (ADS)

    Jakobsen, M. L.; Olesen, A. S.; Larsen, H. E.; Stubager, J.; Hanson, S. G.; Pedersen, T. F.; Pedersen, H. C.

    2016-04-01

    As a part of the work carried out on a project supported by the Danish council for technology and innovation, we have investigated the option of smoothing standard CNC machined surfaces. In the process of constructing optical prototypes, involving custom-designed optics, the development cost and time consumption can become relatively large numbers in a research budget. Machining the optical surfaces directly is expensive and time consuming. Alternatively, a more standardized and cheaper machining method can be used, but then the object needs to be manually polished. During the polishing process the operator needs information about the RMS-value of the surface roughness and the current direction of the scratches introduces by the polishing process. The RMS-value indicates to the operator how far he is from the final finish, and the scratch orientation is often specified by the customer in order to avoid complications during the casting process. In this work we present a method for measuring the RMS-values of the surface roughness while simultaneously determining the polishing direction. We are mainly interested in the RMS-values in the range from 0 - 100 nm, which corresponds to the finish categories of A1, A2 and A3. Based on simple intensity measurements we estimates the RMS-value of the surface roughness, and by using a sectioned annual photo-detector to collect the scattered light we can determine the direction of polishing and distinguish light scattered from random structures and light scattered from scratches.

  12. Oxidative stress contributes to autophagy induction in response to endoplasmic reticulum stress in Chlamydomonas reinhardtii.

    PubMed

    Pérez-Martín, Marta; Pérez-Pérez, María Esther; Lemaire, Stéphane D; Crespo, José L

    2014-10-01

    The accumulation of unfolded/misfolded proteins in the endoplasmic reticulum (ER) results in the activation of stress responses, such as the unfolded protein response or the catabolic process of autophagy to ultimately recover cellular homeostasis. ER stress also promotes the production of reactive oxygen species, which play an important role in autophagy regulation. However, it remains unknown whether reactive oxygen species are involved in ER stress-induced autophagy. In this study, we provide evidence connecting redox imbalance caused by ER stress and autophagy activation in the model unicellular green alga Chlamydomonas reinhardtii. Treatment of C. reinhardtii cells with the ER stressors tunicamycin or dithiothreitol resulted in up-regulation of the expression of genes encoding ER resident endoplasmic reticulum oxidoreductin1 oxidoreductase and protein disulfide isomerases. ER stress also triggered autophagy in C. reinhardtii based on the protein abundance, lipidation, cellular distribution, and mRNA levels of the autophagy marker ATG8. Moreover, increases in the oxidation of the glutathione pool and the expression of oxidative stress-related genes were detected in tunicamycin-treated cells. Our results revealed that the antioxidant glutathione partially suppressed ER stress-induced autophagy and decreased the toxicity of tunicamycin, suggesting that oxidative stress participates in the control of autophagy in response to ER stress in C. reinhardtii In close agreement, we also found that autophagy activation by tunicamycin was more pronounced in the C. reinhardtii sor1 mutant, which shows increased expression of oxidative stress-related genes. PMID:25143584

  13. Transmembrane and coiled-coil domain family 1 is a novel protein of the endoplasmic reticulum.

    PubMed

    Zhang, Chao; Kho, Yik-Shing; Wang, Zhe; Chiang, Yan Ting; Ng, Gary K H; Shaw, Pang-Chui; Wang, Yuzhuo; Qi, Robert Z

    2014-01-01

    The endoplasmic reticulum (ER) is a continuous membrane network in eukaryotic cells comprising the nuclear envelope, the rough ER, and the smooth ER. The ER has multiple critical functions and a characteristic structure. In this study, we identified a new protein of the ER, TMCC1 (transmembrane and coiled-coil domain family 1). The TMCC family consists of at least 3 putative proteins (TMCC1-3) that are conserved from nematode to human. We show that TMCC1 is an ER protein that is expressed in diverse human cell lines. TMCC1 contains 2 adjacent transmembrane domains near the C-terminus, in addition to coiled-coil domains. TMCC1 was targeted to the rough ER through the transmembrane domains, whereas the N-terminal region and C-terminal tail of TMCC1 were found to reside in the cytoplasm. Moreover, the cytosolic region of TMCC1 formed homo- or hetero-dimers or oligomers with other TMCC proteins and interacted with ribosomal proteins. Notably, overexpression of TMCC1 or its transmembrane domains caused defects in ER morphology. Our results suggest roles of TMCC1 in ER organization. PMID:24454821

  14. Role of syntaxin 18 in the organization of endoplasmic reticulum subdomains.

    PubMed

    Iinuma, Takayuki; Aoki, Takehiro; Arasaki, Kohei; Hirose, Hidenori; Yamamoto, Akitsugu; Samata, Rie; Hauri, Hans-Peter; Arimitsu, Nagisa; Tagaya, Mitsuo; Tani, Katsuko

    2009-05-15

    The presence of subdomains in the endoplasmic reticulum (ER) enables this organelle to perform a variety of functions, yet the mechanisms underlying their organization are poorly understood. In the present study, we show that syntaxin 18, a SNAP (soluble NSF attachment protein) receptor localized in the ER, is important for the organization of two ER subdomains, smooth/rough ER membranes and ER exit sites. Knockdown of syntaxin 18 caused a global change in ER membrane architecture, leading to the segregation of the smooth and rough ER. Furthermore, the organization of ER exit sites was markedly changed concomitantly with dispersion of the ER-Golgi intermediate compartment and the Golgi complex. These morphological changes in the ER were substantially recovered by treatment of syntaxin-18-depleted cells with brefeldin A, a reagent that stimulates retrograde membrane flow to the ER. These results suggest that syntaxin 18 has an important role in ER subdomain organization by mediating the fusion of retrograde membrane carriers with the ER membrane. PMID:19401338

  15. Endoplasmic reticulum stress in liver disease.

    PubMed

    Malhi, Harmeet; Kaufman, Randal J

    2011-04-01

    The unfolded protein response (UPR) is activated upon the accumulation of misfolded proteins in the endoplasmic reticulum (ER) that are sensed by the binding immunoglobulin protein (BiP)/glucose-regulated protein 78 (GRP78). The accumulation of unfolded proteins sequesters BiP so it dissociates from three ER-transmembrane transducers leading to their activation. These transducers are inositol requiring (IRE) 1α, PKR-like ER kinase (PERK), and activating transcription factor (ATF) 6α. PERK phosphorylates eukaryotic initiation factor 2 alpha (eIF2α) resulting in global mRNA translation attenuation, and concurrently selectively increases the translation of several mRNAs, including the transcription factor ATF4, and its downstream target CHOP. IRE1α has kinase and endoribonuclease (RNase) activities. IRE1α autophosphorylation activates the RNase activity to splice XBP1 mRNA, to produce the active transcription factor sXBP1. IRE1α activation also recruits and activates the stress kinase JNK. ATF6α transits to the Golgi compartment where it is cleaved by intramembrane proteolysis to generate a soluble active transcription factor. These UPR pathways act in concert to increase ER content, expand the ER protein folding capacity, degrade misfolded proteins, and reduce the load of new proteins entering the ER. All of these are geared toward adaptation to resolve the protein folding defect. Faced with persistent ER stress, adaptation starts to fail and apoptosis occurs, possibly mediated through calcium perturbations, reactive oxygen species, and the proapoptotic transcription factor CHOP. The UPR is activated in several liver diseases; including obesity associated fatty liver disease, viral hepatitis, and alcohol-induced liver injury, all of which are associated with steatosis, raising the possibility that ER stress-dependent alteration in lipid homeostasis is the mechanism that underlies the steatosis. Hepatocyte apoptosis is a pathogenic event in several liver

  16. Presenilin 2 Modulates Endoplasmic Reticulum-Mitochondria Coupling by Tuning the Antagonistic Effect of Mitofusin 2.

    PubMed

    Filadi, Riccardo; Greotti, Elisa; Turacchio, Gabriele; Luini, Alberto; Pozzan, Tullio; Pizzo, Paola

    2016-06-01

    Communication between organelles plays key roles in cell biology. In particular, physical and functional coupling of the endoplasmic reticulum (ER) and mitochondria is crucial for regulation of various physiological and pathophysiological processes. Here, we demonstrate that Presenilin 2 (PS2), mutations in which underlie familial Alzheimer's disease (FAD), promotes ER-mitochondria coupling only in the presence of mitofusin 2 (Mfn2). PS2 is not necessary for the antagonistic effect of Mfn2 on organelle coupling, although its abundance can tune it. The two proteins physically interact, whereas their homologues Mfn1 and PS1 are dispensable for this interplay. Moreover, PS2 mutants associated with FAD are more effective than the wild-type form in modulating ER-mitochondria tethering because their binding to Mfn2 in mitochondria-associated membranes is favored. We propose a revised model for ER-mitochondria interaction to account for these findings and discuss possible implications for FAD pathogenesis. PMID:27239030

  17. Endoplasmic motility spectral characteristics in plasmodium of Physarum polycephalum

    NASA Astrophysics Data System (ADS)

    Avsievich, T. I.; Ghaleb, K. E. S.; Frolov, S. V.; Proskurin, S. G.

    2015-03-01

    Spectral Fourier analysis of experimentally acquired velocity time dependencies, V(t), of shuttle endoplasmic motility in an isolated strand of plasmodium of slime mold Physarum Polycephalum has been realized. V(t) registration was performed in normal conditions and after the treatment by respiration inhibitors, which lead to a complete cessation of endoplasmic motion in the strand. Spectral analysis of the velocity time dependences of the endoplasm allows obtaining two distinct harmonic components in the spectra. Their ratio appeared to be constant in all cases, ν2/ν1=1.97±0.17. After the inhibitors are washed out respiratory system becomes normal, gradually restoring the activity of both harmonic oscillatory sources with time. Simulated velocity time dependences correspond to experimental data with good accuracy.

  18. Endoplasmic Reticulum-Associated Degradation and Lipid Homeostasis.

    PubMed

    Stevenson, Julian; Huang, Edmond Y; Olzmann, James A

    2016-07-17

    The endoplasmic reticulum is the port of entry for proteins into the secretory pathway and the site of synthesis for several important lipids, including cholesterol, triacylglycerol, and phospholipids. Protein production within the endoplasmic reticulum is tightly regulated by a cohort of resident machinery that coordinates the folding, modification, and deployment of secreted and integral membrane proteins. Proteins failing to attain their native conformation are degraded through the endoplasmic reticulum-associated degradation (ERAD) pathway via a series of tightly coupled steps: substrate recognition, dislocation, and ubiquitin-dependent proteasomal destruction. The same ERAD machinery also controls the flux through various metabolic pathways by coupling the turnover of metabolic enzymes to the levels of key metabolites. We review the current understanding and biological significance of ERAD-mediated regulation of lipid metabolism in mammalian cells. PMID:27296502

  19. Optical receivers using rough reflectors

    NASA Technical Reports Server (NTRS)

    Vilnrotter, V. A.

    1985-01-01

    This report examines the possible use of rough, or nondiffraction-limited, reflectors for collecting optical signals. It is shown that in the absence of background radiation, the reflector's surface quality has little effect on the performance of a properly designed receiver, but that the presence of even small amounts of background radiation can lead to severe performance degradation. Techniques are suggested for improving receiver performance in high-background environments, and bounds and approximations to the exact error-probability expressions are derived.

  20. Diffusion-induced line-edge roughness

    NASA Astrophysics Data System (ADS)

    Stewart, Michael D.; Schmid, Gerard M.; Goldfarb, Dario L.; Angelopoulos, Marie; Willson, C. Grant

    2003-06-01

    As feature dimensions shrink, line edge roughness has become an increasing concern in semiconductor fabrication. There are numerous potential contributors to line edge roughness throughout the lithographic process and any measured roughness value on a printed device feature is, like the feature itself, a convolved function of every processing step. When the full lithographic process is used to study line edge roughness, it can be difficult to isolate the contribution to final roughness from any individual processing step or factor. To gain a more fundamental understanding of roughness generation that is specifically related to photoresist chemistry and formulation it is necessary to design experiments that separate out exposure related issues like mask dimension variation or local dose variation ("shot noise"). This can be accomplished using previously reported experimental protocols for bilayer film stack creation. The bilayer experimental approach has been used to study the effect of variations in such factors as post exposure bake time, photoacid generator loading, and developer concentration on roughness generation. Surface roughness of the developed film stacks is measured via atomic force microscopy. Surface roughness of developed bilayer film stacks may be considered analogous to sidewall roughness of printed features. An acrylate-based 193nm photoresist resin and an APEX-type resin are used in these experiments. In addition to experimental results, results from mesoscale lithographic simulations are used to gain further insight into diffusion induced roughness and how roughness in the latent image is modified during the development step.

  1. Intelligent Information Retrieval Using Rough Set Approximations.

    ERIC Educational Resources Information Center

    Srinivasan, Padmini

    1989-01-01

    Describes rough sets theory and discusses the advantages it offers for information retrieval, including the implicit inclusion of Boolean logic, term weighting, ranked retrieval output, and relevance feedback. Rough set formalism is compared to Boolean, vector, and fuzzy models of information retrieval and a small scale evaluation of rough sets is…

  2. Electrokinetic transport in microchannels with random roughness

    SciTech Connect

    Wang, Moran; Kang, Qinjun

    2008-01-01

    We present a numerical framework to model the electrokinetic transport in microchannels with random roughness. The three-dimensional microstructure of the rough channel is generated by a random generation-growth method with three statistical parameters to control the number density, the total volume fraction, and the anisotropy characteristics of roughness elements. The governing equations for the electrokinetic transport are solved by a high-efficiency lattice Poisson?Boltzmann method in complex geometries. The effects from the geometric characteristics of roughness on the electrokinetic transport in microchannels are therefore modeled and analyzed. For a given total roughness volume fraction, a higher number density leads to a lower fluctuation because of the random factors. The electroosmotic flow rate increases with the roughness number density nearly logarithmically for a given volume fraction of roughness but decreases with the volume fraction for a given roughness number density. When both the volume fraction and the number density of roughness are given, the electroosmotic flow rate is enhanced by the increase of the characteristic length along the external electric field direction but is reduced by that in the direction across the channel. For a given microstructure of the rough microchannel, the electroosmotic flow rate decreases with the Debye length. It is found that the shape resistance of roughness is responsible for the flow rate reduction in the rough channel compared to the smooth channel even for very thin double layers, and hence plays an important role in microchannel electroosmotic flows.

  3. Calibration of surface roughness standards

    NASA Astrophysics Data System (ADS)

    Thalmann, R.; Nicolet, A.; Meli, F.; Picotto, G. B.; Matus, M.; Carcedo, L.; Hemming, B.; Ganioglu, O.; De Chiffre, L.; Saraiva, F.; Bergstrand, S.; Zelenika, S.; Tonmueanwai, A.; Tsai, C.-L.; Shihua, W.; Kruger, O.; de Souza, M. M.; Salgado, J. A.; Ramotowski, Z.

    2016-01-01

    The key comparison EURAMET.L-K8.2013 on roughness was carried out in the framework of a EURAMET project starting in 2013 and ending in 2015. It involved the participation of 17 National Metrology Institutes from Europe, Asia, South America and Africa representing four regional metrology organisations. Five surface texture standards of different type were circulated and on each of the standards several roughness parameters according to the standard ISO 4287 had to be determined. 32 out of 395 individual results were not consistent with the reference value. After some corrective actions the number of inconsistent results could be reduced to 20, which correspond to about 5% of the total and can statistically be expected. In addition to the material standards, two softgauges were circulated, which allow to test the software of the instruments used in the comparison. The comparison results help to support the calibraton and measurement capabilities (CMCs) of the laboratories involved in the CIPM MRA. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCL, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  4. Extensive wetting due to roughness

    SciTech Connect

    Yost, F.G.; Michael, J.R.; Eisenmann, E.T. . Center for Solder Science and Technology)

    1995-01-01

    Typically, a small mass of eutectic Sn-Pb solder wets a copper surface and flows radially outward to form a hemispherical shape with a contact angle of approx. 15--20 deg. When a similar mass of solder wets and thick electroless copper coated substrate, rapid radial flow commences and surprising new effects occur. Thick coats of electroless copper have a nodular surface structure and spreading on it does not subside until all solder is consumed. When the nodular structure is wetted by solder a coastline'' with many nearby islands'' are defined. Photos of regions at the wetting front were taken in the backscatter imaging mode of an SEM. These images show that solder wets the valleys between the surface nodules forming a delicate, lacy arrangement. The geometry of this coastal'' solder structure is described as fractal-like having a dimension D = 1.38 making it similar to drying fronts and cloud configurations. The importance of surface roughness in wetting phenomena is discussed in the light of an extensive history on the subject. It is shown that for spontaneous flow, assisted by roughness, the surface geometry must consist of local angles that are larger than the equilibrium contact angle. Kinetics of the wetting process are demonstrated by image analysis of wetted area taken from videotaped experiments. These experimental kinetics are shown to be similar in form to flow in open channel capillaries.

  5. Spherical wave reflection in layered media with rough interfaces: Three-dimensional modeling.

    PubMed

    Pinson, Samuel; Cordioli, Julio; Guillon, Laurent

    2016-08-01

    In the context of sediment characterization, layer interface roughnesses may be responsible for sound-speed profile measurement uncertainties. To study the roughness influence, a three-dimensional (3D) modeling of a layered seafloor with rough interfaces is necessary. Although roughness scattering has an abundant literature, 3D modeling of spherical wave reflection on rough interfaces is generally limited to a single interface (using Kirchhoff-Helmholtz integral) or computationally expensive techniques (finite difference or finite element method). In this work, it is demonstrated that the wave reflection over a layered medium with irregular interfaces can be modeled as a sum of integrals over each interface. The main approximations of the method are the tangent-plane approximation, the Born approximation (multiple reflection between interfaces are neglected) and flat-interface approximation for the transmitted waves into the sediment. The integration over layer interfaces results in a method with reasonable computation cost. PMID:27586741

  6. Continuous network of endoplasmic reticulum in cerebellar Purkinje neurons.

    PubMed Central

    Terasaki, M; Slater, N T; Fein, A; Schmidek, A; Reese, T S

    1994-01-01

    Purkinje neurons in rat cerebellar slices injected with an oil drop saturated with 1,1'-dihexadecyl-3,3,3',3'-tetramethylindocarbocyanine perchlorate [DiIC16(3) or DiI] to label the endoplasmic reticulum were observed by confocal microscopy. DiI spread throughout the cell body and dendrites and into the axon. DiI spreading is due to diffusion in a continuous bilayer and is not due to membrane trafficking because it also spreads in fixed neurons. DiI stained such features of the endoplasmic reticulum as densities at branch points, reticular networks in the cell body and dendrites, nuclear envelope, spines, and aggregates formed during anoxia nuclear envelope, spines, and aggregates formed during anoxia in low extracellular Ca2+. In cultured rat hippocampal neurons, where optical conditions provide more detail, DiI labeled a clearly delineated network of endoplasmic reticulum in the cell body. We conclude that there is a continuous compartment of endoplasmic reticulum extending from the cell body throughout the dendrites. This compartment may coordinate and integrate neuronal functions. Images PMID:7519781

  7. Stressed-Out Endoplasmic Reticulum Inflames the Mitochondria.

    PubMed

    Shin, Sunny; Argon, Yair

    2015-09-15

    Bacterial infection induces inflammasome activation and release of interleukin-1 (IL-1) cytokines. Bronner et al. (2015) show that during Brucella abortus infection, an endoplasmic reticulum stress sensor, IRE1α, initiates NLRP3- and caspase-2-mediated mitochondrial damage that potentiates NLRP3 inflammasome assembly. PMID:26377891

  8. Solar abundance of osmium

    PubMed Central

    Jacoby, George; Aller, Lawrence H.

    1976-01-01

    The abundance parameter, log gfA, where g is the statistical weight of the lower level, f is the oscillator strength, and A is the abundance (by numbers of atoms with respect to hydrogen), has been derived for three lines of osmium by a method of spectrum synthesis. An apparent discordance of the derived abundance with that found from the carbonaceous chondrites is probably to be attributed primarily to errors in the f-values, and blending with unknown contributors. PMID:16592314

  9. Rheological properties of living cytoplasm: endoplasm of Physarum plasmodium.

    PubMed

    Sato, M; Wong, T Z; Allen, R D

    1983-10-01

    Magnetic sphere viscoelastometry, video microscopy, and the Kamiya double chamber method (Kamiya, N., 1940, Science [Wash. DC], 92:462-463.) have been combined in an optical and rheological investigation of the living endoplasm of Physarum polycephalum. The rheological properties examined were yield stress, viscosity (as a function of shear), and elasticity. These parameters were evaluated in directions perpendicular; (X) and parallel (Y) to the plasmodial vein. Known magnetic forces were used for measurements in the X direction, while the falling ball technique was used in the Y direction (Cygan, D.A., and B. Caswell, 1971, Trans. Soc. Rheol. 15:663-683; MacLean-Fletcher, S.D., and T.D. Pollard, 1980, J. Cell Biol., 85:414-428). Approximate yield stresses were calculated in the X and Y directions of 0.58 and 1.05 dyn/cm2, respectively. Apparent viscosities measured in the two directions (eta x and eta y) were found to fluctuate with time. The fluctuations in eta x and eta y were shown, statistically, to occur independently of each other. Frequency correlation with dynamoplasmograms indicated that these fluctuations probably occur independently of the streaming cycle. Viscosity was found to be a complex function of shear, indicating that the endoplasm is non-Newtonian. Plots of shear stress vs. rate of shear both parallel and perpendicular to the vein, showed that endoplasm is not a shear thinning material. These experiments have shown that living endoplasm of Physarum is an anisotropic viscoelastic fluid with a yield stress. The endoplasm appears not to be a homogeneous material, but to be composed of heterogeneous domains. PMID:6619187

  10. Global distribution of microbial abundance and biomass in subseafloor sediment

    PubMed Central

    Kallmeyer, Jens; Pockalny, Robert; Adhikari, Rishi Ram; Smith, David C.; D’Hondt, Steven

    2012-01-01

    The global geographic distribution of subseafloor sedimentary microbes and the cause(s) of that distribution are largely unexplored. Here, we show that total microbial cell abundance in subseafloor sediment varies between sites by ca. five orders of magnitude. This variation is strongly correlated with mean sedimentation rate and distance from land. Based on these correlations, we estimate global subseafloor sedimentary microbial abundance to be 2.9⋅1029 cells [corresponding to 4.1 petagram (Pg) C and ∼0.6% of Earth’s total living biomass]. This estimate of subseafloor sedimentary microbial abundance is roughly equal to previous estimates of total microbial abundance in seawater and total microbial abundance in soil. It is much lower than previous estimates of subseafloor sedimentary microbial abundance. In consequence, we estimate Earth’s total number of microbes and total living biomass to be, respectively, 50–78% and 10–45% lower than previous estimates. PMID:22927371

  11. Martian surface roughness and stratigraphy

    NASA Astrophysics Data System (ADS)

    Beyer, Ross Alan

    2004-12-01

    Orbital datasets can be combined and manipulated to learn about the three- dimensional structure of planetary surfaces, and the processes that have acted on them. The Mars Orbital Camera (MOC) is providing high-resolution images. These images allow qualitative inspection of features, and contain quantitative information about the shape of the surface. Using a photoclinometry technique derived from a lunar-Lambert photometric function, I am able to obtain estimates of the down-sun slope of each pixel in an image. This technique was calibrated against synthetic topography, compared to an area photoclinometry technique, and applied to the Viking and Pathfinder landing sites. It is a robust technique for obtaining the roughness and slope characteristics of large areas. It was applied to the potential landing sites for the Mars Exploration Rovers to evaluate site safety. The slopes from this point photoclinometry technique can be used to obtain a rough estimate of topography, which I used in a number of studies where topographic information was crucial. MOC images have shown that layering is pervasive on the martian surface. Mars Orbital Laser Altimeter (MOLA) data can be registered to MOC images to provide elevation constraints on layer outcrops. Such layers are observed in eastern Coprates Chasma both in the chasma rim and in a flat-topped massif. Observations indicate that the chasma stratigraphy consists of thin sequences of resistant layers and intervening thicker sequences of relatively less resistant layers. More resistant units cap the massif against erosion and result in steeper slopes than the weaker units would otherwise allow. These resistant layers can be used as stratigraphic markers which have allowed me to measure the subsidence and tilting of the massif relative to the chasma walls, providing evidence for tectonic motion in this portion of the Valles Marineris. These outcrops indicate that some of these layers may be analogus to terristrial flood

  12. Equivalent impedance of a rough interface

    NASA Astrophysics Data System (ADS)

    Zhuk, N. P.; Tret'iakov, O. A.

    1987-10-01

    An equivalent-impedance (EI) dyad is constructed for a rough and plane (on the average) interface dividing two plane-stratified magnetodielectric media. Its characteristics are related to those of a smooth surface and to the scattering properties of the roughnesses. It is shown that the Hermitian part of an EI dyad is formed through field scattering by roughnesses into the propagating natural modes of the regular medium.

  13. Simplified Approach to Predicting Rough Surface Transition

    NASA Technical Reports Server (NTRS)

    Boyle, R. J.; Stripf, M.

    2009-01-01

    Turbine vane heat transfer predictions are given for smooth and rough vanes where the experimental data show transition moving forward on the vane as the surface roughness physical height increases. Consistent with smooth vane heat transfer, the transition moves forward for a fixed roughness height as the Reynolds number increases. Comparisons are presented with published experimental data. Some of the data are for a regular roughness geometry with a range of roughness heights, Reynolds numbers, and inlet turbulence intensities. The approach taken in this analysis is to treat the roughness in a statistical sense, consistent with what would be obtained from blades measured after exposure to actual engine environments. An approach is given to determine the equivalent sand grain roughness from the statistics of the regular geometry. This approach is guided by the experimental data. A roughness transition criterion is developed, and comparisons are made with experimental data over the entire range of experimental test conditions. Additional comparisons are made with experimental heat transfer data, where the roughness geometries are both regular and statistical. Using the developed analysis, heat transfer calculations are presented for the second stage vane of a high pressure turbine at hypothetical engine conditions.

  14. Simplified Approach to Predicting Rough Surface Transition

    NASA Technical Reports Server (NTRS)

    Boyle, Robert J.; Stripf, Matthias

    2009-01-01

    Turbine vane heat transfer predictions are given for smooth and rough vanes where the experimental data show transition moving forward on the vane as the surface roughness physical height increases. Consiste nt with smooth vane heat transfer, the transition moves forward for a fixed roughness height as the Reynolds number increases. Comparison s are presented with published experimental data. Some of the data ar e for a regular roughness geometry with a range of roughness heights, Reynolds numbers, and inlet turbulence intensities. The approach ta ken in this analysis is to treat the roughness in a statistical sense , consistent with what would be obtained from blades measured after e xposure to actual engine environments. An approach is given to determ ine the equivalent sand grain roughness from the statistics of the re gular geometry. This approach is guided by the experimental data. A roughness transition criterion is developed, and comparisons are made with experimental data over the entire range of experimental test co nditions. Additional comparisons are made with experimental heat tran sfer data, where the roughness geometries are both regular as well a s statistical. Using the developed analysis, heat transfer calculatio ns are presented for the second stage vane of a high pressure turbine at hypothetical engine conditions.

  15. Rough set models of Physarum machines

    NASA Astrophysics Data System (ADS)

    Pancerz, Krzysztof; Schumann, Andrew

    2015-04-01

    In this paper, we consider transition system models of behaviour of Physarum machines in terms of rough set theory. A Physarum machine, a biological computing device implemented in the plasmodium of Physarum polycephalum (true slime mould), is a natural transition system. In the behaviour of Physarum machines, one can notice some ambiguity in Physarum motions that influences exact anticipation of states of machines in time. To model this ambiguity, we propose to use rough set models created over transition systems. Rough sets are an appropriate tool to deal with rough (ambiguous, imprecise) concepts in the universe of discourse.

  16. Reaction of sorghum lines to zonate leaf spot and rough leaf spot

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Abundant, frequent rains, along with humid and cloudy conditions during the early part of the 2015 growing season, provided conducive conditions for an unusually severe outbreak of zonate leaf spot and rough leaf spot in a block of sorghum lines at the Texas A&M AgriLife Research Farm, Burleson Coun...

  17. Endoplasmic reticulum stress in mouse decidua during early pregnancy.

    PubMed

    Gu, Xiao-Wei; Yan, Jia-Qi; Dou, Hai-Ting; Liu, Jie; Liu, Li; Zhao, Meng-Long; Liang, Xiao-Huan; Yang, Zeng-Ming

    2016-10-15

    Unfolded or misfolded protein accumulation in the endoplasmic reticulum lumen leads to endoplasmic reticulum stress (ER stress). Although it is known that ER stress is crucial for mammalian reproduction, little is known about its physiological significance and underlying mechanism during decidualization. Here we show that Ire-Xbp1 signal transduction pathway of unfolded protein response (UPR) is activated in decidual cells. The process of decidualization is compromised by ER stress inhibitor tauroursodeoxycholic acid sodium (TUDCA) and Ire specific inhibitor STF-083010 both in vivo and in vitro. A high concentration of ER stress inducer tunicamycin (TM) suppresses stromal cells proliferation and decidualization, while a lower concentration is beneficial. We further show that ER stress induces DNA damage and polyploidization in stromal cells. In conclusion, our data suggest that the GRP78/Ire1/Xbp1 signaling pathway of ER stress-UPR is activated and involved in mouse decidualization. PMID:27283502

  18. Quantitative Proteomics and Lipidomics Analysis of Endoplasmic Reticulum of Macrophage Infected with Mycobacterium tuberculosis.

    PubMed

    Saquib, Najmuddin Mohd; Jamwal, Shilpa; Midha, Mukul Kumar; Verma, Hirdya Narain; Manivel, Venkatasamy

    2015-01-01

    Even though endoplasmic reticulum (ER) stress associated with mycobacterial infection has been well studied, the molecular basis of ER as a crucial organelle to determine the fate of Mtb is yet to be established. Here, we have studied the ability of Mtb to manipulate the ultrastructural architecture of macrophage ER and found that the ER-phenotypes associated with virulent (H37Rv) and avirulent (H37Ra) strains were different: a rough ER (RER) with the former against a smooth ER (SER) with the later. Further, the functional attributes of these changes were probed by MS-based quantitative proteomics (133 ER proteins) and lipidomics (8 phospholipids). Our omics approaches not only revealed the host pathogen cross-talk but also emphasized how precisely Mtb uses proteins and lipids in combination to give rise to characteristic ER-phenotypes. H37Ra-infected macrophages increased the cytosolic Ca(2+) levels by attenuating the ATP2A2 protein and simultaneous induction of PC/PE expression to facilitate apoptosis. However, H37Rv inhibited apoptosis and further controlled the expression of EST-1 and AMRP proteins to disturb cholesterol homeostasis resulting in sustained infection. This approach offers the potential to decipher the specific roles of ER in understanding the cell biology of mycobacterial infection with special reference to the impact of host response. PMID:25785198

  19. Quantitative Proteomics and Lipidomics Analysis of Endoplasmic Reticulum of Macrophage Infected with Mycobacterium tuberculosis

    PubMed Central

    Saquib, Najmuddin Mohd; Jamwal, Shilpa; Midha, Mukul Kumar; Verma, Hirdya Narain; Manivel, Venkatasamy

    2015-01-01

    Even though endoplasmic reticulum (ER) stress associated with mycobacterial infection has been well studied, the molecular basis of ER as a crucial organelle to determine the fate of Mtb is yet to be established. Here, we have studied the ability of Mtb to manipulate the ultrastructural architecture of macrophage ER and found that the ER-phenotypes associated with virulent (H37Rv) and avirulent (H37Ra) strains were different: a rough ER (RER) with the former against a smooth ER (SER) with the later. Further, the functional attributes of these changes were probed by MS-based quantitative proteomics (133 ER proteins) and lipidomics (8 phospholipids). Our omics approaches not only revealed the host pathogen cross-talk but also emphasized how precisely Mtb uses proteins and lipids in combination to give rise to characteristic ER-phenotypes. H37Ra-infected macrophages increased the cytosolic Ca2+ levels by attenuating the ATP2A2 protein and simultaneous induction of PC/PE expression to facilitate apoptosis. However, H37Rv inhibited apoptosis and further controlled the expression of EST-1 and AMRP proteins to disturb cholesterol homeostasis resulting in sustained infection. This approach offers the potential to decipher the specific roles of ER in understanding the cell biology of mycobacterial infection with special reference to the impact of host response. PMID:25785198

  20. Top consumer abundance influences lake methane efflux

    PubMed Central

    Devlin, Shawn P.; Saarenheimo, Jatta; Syväranta, Jari; Jones, Roger I.

    2015-01-01

    Lakes are important habitats for biogeochemical cycling of carbon. The organization and structure of aquatic communities influences the biogeochemical interactions between lakes and the atmosphere. Understanding how trophic structure regulates ecosystem functions and influences greenhouse gas efflux from lakes is critical to understanding global carbon cycling and climate change. With a whole-lake experiment in which a previously fishless lake was divided into two treatment basins where fish abundance was manipulated, we show how a trophic cascade from fish to microbes affects methane efflux to the atmosphere. Here, fish exert high grazing pressure and remove nearly all zooplankton. This reduction in zooplankton density increases the abundance of methanotrophic bacteria, which in turn reduce CH4 efflux rates by roughly 10 times. Given that globally there are millions of lakes emitting methane, an important greenhouse gas, our findings that aquatic trophic interactions significantly influence the biogeochemical cycle of methane has important implications. PMID:26531291

  1. Top consumer abundance influences lake methane efflux.

    PubMed

    Devlin, Shawn P; Saarenheimo, Jatta; Syväranta, Jari; Jones, Roger I

    2015-01-01

    Lakes are important habitats for biogeochemical cycling of carbon. The organization and structure of aquatic communities influences the biogeochemical interactions between lakes and the atmosphere. Understanding how trophic structure regulates ecosystem functions and influences greenhouse gas efflux from lakes is critical to understanding global carbon cycling and climate change. With a whole-lake experiment in which a previously fishless lake was divided into two treatment basins where fish abundance was manipulated, we show how a trophic cascade from fish to microbes affects methane efflux to the atmosphere. Here, fish exert high grazing pressure and remove nearly all zooplankton. This reduction in zooplankton density increases the abundance of methanotrophic bacteria, which in turn reduce CH4 efflux rates by roughly 10 times. Given that globally there are millions of lakes emitting methane, an important greenhouse gas, our findings that aquatic trophic interactions significantly influence the biogeochemical cycle of methane has important implications. PMID:26531291

  2. Wetting properties of molecularly rough surfaces

    SciTech Connect

    Svoboda, Martin; Lísal, Martin; Malijevský, Alexandr

    2015-09-14

    We employ molecular dynamics simulations to study the wettability of nanoscale rough surfaces in systems governed by Lennard-Jones (LJ) interactions. We consider both smooth and molecularly rough planar surfaces. Solid substrates are modeled as a static collection of LJ particles arranged in a face-centered cubic lattice with the (100) surface exposed to the LJ fluid. Molecularly rough solid surfaces are prepared by removing several strips of LJ atoms from the external layers of the substrate, i.e., forming parallel nanogrooves on the surface. We vary the solid-fluid interactions to investigate strongly and weakly wettable surfaces. We determine the wetting properties by measuring the equilibrium droplet profiles that are in turn used to evaluate the contact angles. Macroscopic arguments, such as those leading to Wenzel’s law, suggest that surface roughness always amplifies the wetting properties of a lyophilic surface. However, our results indicate the opposite effect from roughness for microscopically corrugated surfaces, i.e., surface roughness deteriorates the substrate wettability. Adding the roughness to a strongly wettable surface shrinks the surface area wet with the liquid, and it either increases or only marginally affects the contact angle, depending on the degree of liquid adsorption into the nanogrooves. For a weakly wettable surface, the roughness changes the surface character from lyophilic to lyophobic due to a weakening of the solid-fluid interactions by the presence of the nanogrooves and the weaker adsorption of the liquid into the nanogrooves.

  3. Optical methods for cylindrical rough surface testing

    NASA Astrophysics Data System (ADS)

    Perez Quintian, F.; Rebollo, Maria A.; Gaggioli, Nestor G.; Raffo, C. A.

    1999-07-01

    This work studies theoretically the scattering of light from cylindrical rough surfaces. It is shown, for the conical diffraction configuration, that the mean intensity on an observation plane perpendicular to the cylinder longitudinal axis, is related to the statistical parameters that characterize the surface: the roughness (sigma) and the correlation length T.

  4. Roughness configuration matters for aeolian sediment flux

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The parameterisation of surface roughness effects on aeolian sediment transport is a key source of uncertainty in wind erosion models. Roughness effects are typically represented by bulk drag-partitioning schemes that scale the threshold friction velocity (u*t) for soil entrainment by the ratio of s...

  5. Wetting properties of molecularly rough surfaces.

    PubMed

    Svoboda, Martin; Malijevský, Alexandr; Lísal, Martin

    2015-09-14

    We employ molecular dynamics simulations to study the wettability of nanoscale rough surfaces in systems governed by Lennard-Jones (LJ) interactions. We consider both smooth and molecularly rough planar surfaces. Solid substrates are modeled as a static collection of LJ particles arranged in a face-centered cubic lattice with the (100) surface exposed to the LJ fluid. Molecularly rough solid surfaces are prepared by removing several strips of LJ atoms from the external layers of the substrate, i.e., forming parallel nanogrooves on the surface. We vary the solid-fluid interactions to investigate strongly and weakly wettable surfaces. We determine the wetting properties by measuring the equilibrium droplet profiles that are in turn used to evaluate the contact angles. Macroscopic arguments, such as those leading to Wenzel's law, suggest that surface roughness always amplifies the wetting properties of a lyophilic surface. However, our results indicate the opposite effect from roughness for microscopically corrugated surfaces, i.e., surface roughness deteriorates the substrate wettability. Adding the roughness to a strongly wettable surface shrinks the surface area wet with the liquid, and it either increases or only marginally affects the contact angle, depending on the degree of liquid adsorption into the nanogrooves. For a weakly wettable surface, the roughness changes the surface character from lyophilic to lyophobic due to a weakening of the solid-fluid interactions by the presence of the nanogrooves and the weaker adsorption of the liquid into the nanogrooves. PMID:26374050

  6. Computational Methods for Rough Classification and Discovery.

    ERIC Educational Resources Information Center

    Bell, D. A.; Guan, J. W.

    1998-01-01

    Rough set theory is a new mathematical tool to deal with vagueness and uncertainty. Computational methods are presented for using rough sets to identify classes in datasets, finding dependencies in relations, and discovering rules which are hidden in databases. The methods are illustrated with a running example from a database of car test results.…

  7. OXYGEN ABUNDANCES IN CEPHEIDS

    SciTech Connect

    Luck, R. E.; Andrievsky, S. M.; Korotin, S. N.; Kovtyukh, V. V. E-mail: serkor@skyline.od.ua E-mail: scan@deneb1.odessa.ua

    2013-07-01

    Oxygen abundances in later-type stars, and intermediate-mass stars in particular, are usually determined from the [O I] line at 630.0 nm, and to a lesser extent, from the O I triplet at 615.7 nm. The near-IR triplets at 777.4 nm and 844.6 nm are strong in these stars and generally do not suffer from severe blending with other species. However, these latter two triplets suffer from strong non-local thermodynamic equilibrium (NLTE) effects and thus see limited use in abundance analyses. In this paper, we derive oxygen abundances in a large sample of Cepheids using the near-IR triplets from an NLTE analysis, and compare those abundances to values derived from a local thermodynamic equilibrium (LTE) analysis of the [O I] 630.0 nm line and the O I 615.7 nm triplet as well as LTE abundances for the 777.4 nm triplet. All of these lines suffer from line strength problems making them sensitive to either measurement complications (weak lines) or to line saturation difficulties (strong lines). Upon this realization, the LTE results for the [O I] lines and the O I 615.7 nm triplet are in adequate agreement with the abundance from the NLTE analysis of the near-IR triplets.

  8. Endoplasmic reticulum stress: implications for inflammatory bowel disease pathogenesis

    PubMed Central

    Kaser, Arthur; Martínez-Naves, Eduardo; Blumberg, Richard S.

    2015-01-01

    Purpose of review To provide an overview of the emerging role of cellular stress responses in inflammatory bowel disease (IBD). Recent findings The unfolded protein response (UPR) is a primitive cellular pathway that is engaged when responding to endoplasmic reticulum stress and regulates autophagy. Highly secretory cells such as Paneth cells and goblet cells in the intestines are particularly susceptible to endoplasmic reticulum stress and are exceedingly dependent upon a properly functioning UPR to maintain cellular viability and homeostasis. Primary genetic abnormalities within the components of the UPR (e.g. XBP1, ARG2, ORMDL3), genes that encode proteins reliant upon a robust secretory pathway (e.g. MUC2, HLAB27) and environmental factors that create disturbances in the UPR (e.g. microbial products and inflammatory cytokines) are important factors in the primary development and/or perpetuation of intestinal inflammation. Summary Endoplasmic reticulum stress is an important new pathway involved in the development of intestinal inflammation associated with IBD and likely other intestinal inflammatory disorders. PMID:20495455

  9. Endoplasmic reticulum stress in spinal and bulbar muscular atrophy: a potential target for therapy.

    PubMed

    Montague, Karli; Malik, Bilal; Gray, Anna L; La Spada, Albert R; Hanna, Michael G; Szabadkai, Gyorgy; Greensmith, Linda

    2014-07-01

    Spinal and bulbar muscular atrophy is an X-linked degenerative motor neuron disease caused by an abnormal expansion in the polyglutamine encoding CAG repeat of the androgen receptor gene. There is evidence implicating endoplasmic reticulum stress in the development and progression of neurodegenerative disease, including polyglutamine disorders such as Huntington's disease and in motor neuron disease, where cellular stress disrupts functioning of the endoplasmic reticulum, leading to induction of the unfolded protein response. We examined whether endoplasmic reticulum stress is also involved in the pathogenesis of spinal and bulbar muscular atrophy. Spinal and bulbar muscular atrophy mice that carry 100 pathogenic polyglutamine repeats in the androgen receptor, and develop a late-onset neuromuscular phenotype with motor neuron degeneration, were studied. We observed a disturbance in endoplasmic reticulum-associated calcium homeostasis in cultured embryonic motor neurons from spinal and bulbar muscular atrophy mice, which was accompanied by increased endoplasmic reticulum stress. Furthermore, pharmacological inhibition of endoplasmic reticulum stress reduced the endoplasmic reticulum-associated cell death pathway. Examination of spinal cord motor neurons of pathogenic mice at different disease stages revealed elevated expression of markers for endoplasmic reticulum stress, confirming an increase in this stress response in vivo. Importantly, the most significant increase was detected presymptomatically, suggesting that endoplasmic reticulum stress may play an early and possibly causal role in disease pathogenesis. Our results therefore indicate that the endoplasmic reticulum stress pathway could potentially be a therapeutic target for spinal and bulbar muscular atrophy and related polyglutamine diseases. PMID:24898351

  10. Casimir effect with rough metallic mirrors

    SciTech Connect

    Neto, Paulo A. Maia; Lambrecht, Astrid; Reynaud, Serge

    2005-07-15

    We calculate the second-order roughness correction to the Casimir energy for two parallel metallic mirrors. Our results may also be applied to the plane-sphere geometry used in most experiments. The metallic mirrors are described by the plasma model, with arbitrary values for the plasma wavelength, the mirror separation, and the roughness correlation length, with the roughness amplitude remaining the smallest length scale for perturbation theory to hold. From the analysis of the intracavity field fluctuations, we obtain the Casimir energy correction in terms of generalized reflection operators, which account for diffraction and polarization coupling in the scattering by the rough surfaces. We present simple analytical expressions for several limiting cases, as well as numerical results that allow for a reliable calculation of the roughness correction in real experiments. The correction is larger than the result of the proximity force approximation, which is obtained from our theory as a limiting case (very smooth surfaces)

  11. Modeling surface roughness scattering in metallic nanowires

    SciTech Connect

    Moors, Kristof; Sorée, Bart; Magnus, Wim

    2015-09-28

    Ando's model provides a rigorous quantum-mechanical framework for electron-surface roughness scattering, based on the detailed roughness structure. We apply this method to metallic nanowires and improve the model introducing surface roughness distribution functions on a finite domain with analytical expressions for the average surface roughness matrix elements. This approach is valid for any roughness size and extends beyond the commonly used Prange-Nee approximation. The resistivity scaling is obtained from the self-consistent relaxation time solution of the Boltzmann transport equation and is compared to Prange-Nee's approach and other known methods. The results show that a substantial drop in resistivity can be obtained for certain diameters by achieving a large momentum gap between Fermi level states with positive and negative momentum in the transport direction.

  12. Vemurafenib potently induces endoplasmic reticulum stress-mediated apoptosis in BRAFV600E melanoma cells

    PubMed Central

    Beck, Daniela; Niessner, Heike; Smalley, Keiran S.M.; Flaherty, Keith; Paraiso, Kim H.T.; Busch, Christian; Sinnberg, Tobias; Vasseur, Sophie; Iovanna, Juan Lucio; Drießen, Stefan; Stork, Björn; Wesselborg, Sebastian; Schaller, Martin; Biedermann, Tilo; Bauer, Jürgen; Lasithiotakis, Konstantinos; Weide, Benjamin; Eberle, Jürgen; Schittek, Birgit; Schadendorf, Dirk; Garbe, Claus; Kulms, Dagmar; Meier, Friedegund

    2013-01-01

    The V600E mutation in the kinase BRAF is frequently detected in melanomas and results in constitutive activation of BRAF, which then promotes cell proliferation by the mitogen-activated protein kinase (MAPK) signaling pathway. Although the BRAFV600E kinase inhibitor vemurafenib has remarkable antitumor activity in patients with BRAFV600E-mutated melanoma, its effects are limited by the onset of drug resistance. We found that exposure of melanoma cell lines with the BRAFV600E mutation to vemurafenib decreased the abundance of anti-apoptotic proteins and induced intrinsic mitochondrial apoptosis. Vemurafenib-treated melanoma cells showed increased cytosolic concentration of calcium, a potential trigger for endoplasmic reticulum (ER) stress, which can lead to apoptosis. Consistent with an ER stress-induced response, vemurafenib decreased the abundance of the ER chaperone protein GRP78, increased the abundance of the spliced isoform of the transcription factor X-box protein 1 (XBP1) (which transcriptionally activates genes involved in ER stress responses), increased the phosphorylation of the translation initiation factor eIF2α (which would be expected to inhibit protein synthesis), and induced the expression of ER stress-related genes. Knockdown of the ER stress response protein ATF4 significantly reduced vemurafenib-induced apoptosis. Moreover, the ER stress inducer thapsigargin prevented invasive growth of tumors formed from vemurafenib-sensitive melanoma cells in vivo. In melanoma cells with low sensitivity or resistance to vemurafenib, combination treatment with thapsigargin augmented or induced apoptosis. Thus, thapsigargin or other inducers of ER stress may be useful in combination therapies to overcome vemurafenib resistance. PMID:23362240

  13. On the roughness measurement on knee prostheses.

    PubMed

    Jaber, Sami Abdel; Ruggiero, Alessandro; Battaglia, Santina; Affatato, Saverio

    2015-01-01

    The majority of total knee replacements currently implanted present an articulation composed of two metal parts, femoral and tibial components, between which there is a polyethylene insert serving as a bearing surface. The finishing surface of the metal components is a very important factor in minimizing the polyethylene wear rate and, later, the gradual production of metal and plastic debris. Considering the role of surface roughness on volumetric wear rates, the purpose of this study is to develop a protocol for the roughness characterization of total knee prosthesis (TKP) metal components, taking into consideration a limited number of points on each surface. Six mobile TKP of different sizes (three size 2 and three size 6) were tested on a knee joint simulator to compare the wear behavior of each group. After 2 million cycles the weight loss by the polyethylene inserts was measured with gravimetric method and the surface roughness of the metallic components was assessed in terms of average surface roughness, Ra, skewness, Rsk, and total roughness, Rt. Roughness measurement involved 29 points on each femoral condyle and 26 points on each metal tibial plate. The data collected has shown an increased roughness upon wear testing for both the investigated TKP sizes. No statistical differences were observed between the two groups for both the parameters Ra, Rsk, and Rt. The surface of all metallic components became more negatively skewed, indicating diminishing peaks. The various parameters were correlated to the volumetric loss using a linear regression analysis. PMID:25588764

  14. Thermal contact conductance of spherical, rough metals

    SciTech Connect

    Lambert, M.A.; Fletcher, L.S.

    1996-12-31

    Junction thermal conductance is an important consideration in such applications as thermally induced stresses in supersonic and hypersonic flight vehicles, nuclear reactor cooling, electronics packaging, spacecraft thermal control, gas turbine and internal combustion engine cooling, and cryogenic liquid storage. A fundamental problem in analyzing and predicting junction thermal conductance is thermal contact conductance of non-flat, rough metals. Workable models have been previously derived for the limiting idealized cases of flat, rough and spherical, smooth surfaces. However, until now, no tractable models have been advanced for non-flat, rough surfaces (so called engineering surfaces) which are much more commonly dealt with in practice. The present investigation details the synthesis of previously derived models for macroscopically non-uniform thermal contact conductance and contact of non-flat, rough spheres, into a thermo-mechanical model, its refinement, and its presentation in an easily applied format. The present model is compared to representative experimental conductance results form the literature for stainless steel 304 with widely varying flatness deviation and roughness. Also included in the comparisons is a previous, often cited model for flat, rough metals to which the present model reduces in the limit of flat surfaces. The present model agrees well with the experimental results over the wide ranges of flatness deviation and roughness for which data was available. Conversely, the previous, well known model becomes increasingly overpredictive with increasing flatness deviation.

  15. Turbulent flow in smooth and rough pipes.

    PubMed

    Allen, J J; Shockling, M A; Kunkel, G J; Smits, A J

    2007-03-15

    Recent experiments at Princeton University have revealed aspects of smooth pipe flow behaviour that suggest a more complex scaling than previously noted. In particular, the pressure gradient results yield a new friction factor relationship for smooth pipes, and the velocity profiles indicate the presence of a power-law region near the wall and, for Reynolds numbers greater than about 400x103 (R+>9x103), a logarithmic region further out. New experiments on a rough pipe with a honed surface finish with krms/D=19.4x10-6, over a Reynolds number range of 57x103-21x106, show that in the transitionally rough regime this surface follows an inflectional friction factor relationship rather than the monotonic relationship given in the Moody diagram. Outer-layer scaling of the mean velocity data and streamwise turbulence intensities for the rough pipe show excellent collapse and provide strong support for Townsend's outer-layer similarity hypothesis for rough-walled flows. The streamwise rough-wall spectra also agree well with the corresponding smooth-wall data. The pipe exhibited smooth behaviour for ks+ < or =3.5, which supports the suggestion that the original smooth pipe was indeed hydraulically smooth for ReD< or =24x106. The relationship between the velocity shift, DeltaU/utau, and the roughness Reynolds number, ks+, has been used to generalize the form of the transition from smooth to fully rough flow for an arbitrary relative roughness krms/D. These predictions apply for honed pipes when the separation of pipe diameter to roughness height is large, and they differ significantly from the traditional Moody curves. PMID:17244585

  16. Layering of ionic liquids on rough surfaces

    NASA Astrophysics Data System (ADS)

    Sheehan, Alexis; Jurado, L. Andres; Ramakrishna, Shivaprakash N.; Arcifa, Andrea; Rossi, Antonella; Spencer, Nicholas D.; Espinosa-Marzal, Rosa M.

    2016-02-01

    Understanding the behavior of ionic liquids (ILs) either confined between rough surfaces or in rough nanoscale pores is of great relevance to extend studies performed on ideally flat surfaces to real applications. In this work we have performed an extensive investigation of the structural forces between two surfaces with well-defined roughness (<9 nm RMS) in 1-hexyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide by atomic force microscopy. Statistical studies of the measured layer thicknesses, layering force, and layering frequency reveal the ordered structure of the rough IL-solid interface. Our work shows that the equilibrium structure of the interfacial IL strongly depends on the topography of the contact.Understanding the behavior of ionic liquids (ILs) either confined between rough surfaces or in rough nanoscale pores is of great relevance to extend studies performed on ideally flat surfaces to real applications. In this work we have performed an extensive investigation of the structural forces between two surfaces with well-defined roughness (<9 nm RMS) in 1-hexyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide by atomic force microscopy. Statistical studies of the measured layer thicknesses, layering force, and layering frequency reveal the ordered structure of the rough IL-solid interface. Our work shows that the equilibrium structure of the interfacial IL strongly depends on the topography of the contact. Electronic supplementary information (ESI) available: Optimized geometries and sizes for [HMIM] Ntf2, SEM images of the smooth and rough colloids, frequency of occurrence of layering in the resolved force-distance curves for all investigated systems with [HMIM] Ntf2, layer size and layering force measured with a sharp tip on mica for the same IL, and results of the kinetics experiments. See DOI: 10.1039/c5nr07805a

  17. Understanding EUV mask blank surface roughness induced LWR and associated roughness requirement

    SciTech Connect

    Yan, Pei-Yang; Zhang, Guojing; Gullickson, Eric M.; Goldberg, Kenneth A.; Benk, Markus P.

    2015-03-01

    Extreme ultraviolet lithography (EUVL) mask multi-layer (ML) blank surface roughness specification historically comes from blank defect inspection tool requirement. Later, new concerns on ML surface roughness induced wafer pattern line width roughness (LWR) arise. In this paper, we have studied wafer level pattern LWR as a function of EUVL mask surface roughness via High-NA Actinic Reticle Review Tool. We found that the blank surface roughness induced LWR at current blank roughness level is in the order of 0.5nm 3σ for NA=0.42 at the best focus. At defocus of ±40nm, the corresponding LWR will be 0.2nm higher. Further reducing EUVL mask blank surface roughness will increase the blank cost with limited benefit in improving the pattern LWR, provided that the intrinsic resist LWR is in the order of 1nm and above.

  18. Numerical Schemes for Rough Parabolic Equations

    SciTech Connect

    Deya, Aurelien

    2012-04-15

    This paper is devoted to the study of numerical approximation schemes for a class of parabolic equations on (0,1) perturbed by a non-linear rough signal. It is the continuation of Deya (Electron. J. Probab. 16:1489-1518, 2011) and Deya et al. (Probab. Theory Relat. Fields, to appear), where the existence and uniqueness of a solution has been established. The approach combines rough paths methods with standard considerations on discretizing stochastic PDEs. The results apply to a geometric 2-rough path, which covers the case of the multidimensional fractional Brownian motion with Hurst index H>1/3.

  19. Giant persistent photoconductivity in rough silicon nanomembranes.

    PubMed

    Feng, Ping; Mönch, Ingolf; Harazim, Stefan; Huang, Gaoshan; Mei, Yongfeng; Schmidt, Oliver G

    2009-10-01

    This paper reports the observation of giant persistent photoconductivity from rough Si nanomembranes. When exposed to light, the current in p-type Si nanomembranes is enhanced by roughly 3 orders of magnitude in comparison with that in the dark and can persist for days at a high conductive state after the light is switched off. An applied gate voltage can tune the persistent photocurrent and accelerate the response to light. By analyzing the band structure of the devices and the surfaces through various coatings, we attribute the observed effect to hole-localized regions in Si nanomembranes due to the rough surfaces, where light can activate the confined holes. PMID:19637888

  20. Nanoscale roughness micromilled silica evanescent refractometer.

    PubMed

    Carpenter, Lewis G; Cooper, Peter A; Holmes, Christopher; Gawith, Corin B E; Gates, James C; Smith, Peter G R

    2015-01-26

    We demonstrate machining of precision slots in silica with nanoscale roughness for applications in photonics. Using our in-house developed milling system we have achieved machined slots with surface roughness of 3.0 nm (Sa) and 17 µm depth of cut. This result represents eight times improvement in surface roughness and forty times increase in depth of cut than previously reported. We also demonstrate integration of these milled slots with UV-written waveguides and Bragg gratings to create optical refractometers, based on monitoring Fabry-Pérot spectral fringe changes. PMID:25835860

  1. Solar abundance of platinum

    PubMed Central

    Burger, Harry; Aller, Lawrence H.

    1975-01-01

    Three lines of neutral platinum, located at λ 2997.98 Å, λ 3064.71 Å, and λ 3301.86 Å have been used to determine the solar platinum abundance by the method of spectral synthesis. On the scale, log A(H) = 12.00, the thus-derived solar platinum abundance is 1.75 ± 0.10, in fair accord with Cameron's value of log A(Pt) = 1.69 derived by Mason from carbonaceous chondrites and calculated on the assumption that log A(Si) = 7.55 in the sun. PMID:16592278

  2. Protein misfolding in the endoplasmic reticulum as a conduit to human disease.

    PubMed

    Wang, Miao; Kaufman, Randal J

    2016-01-21

    In eukaryotic cells, the endoplasmic reticulum is essential for the folding and trafficking of proteins that enter the secretory pathway. Environmental insults or increased protein synthesis often lead to protein misfolding in the organelle, the accumulation of misfolded or unfolded proteins - known as endoplasmic reticulum stress - and the activation of the adaptive unfolded protein response to restore homeostasis. If protein misfolding is not resolved, cells die. Endoplasmic reticulum stress and activation of the unfolded protein response help to determine cell fate and function. Furthermore, endoplasmic reticulum stress contributes to the aetiology of many human diseases. PMID:26791723

  3. Oxidative Stress Contributes to Autophagy Induction in Response to Endoplasmic Reticulum Stress in Chlamydomonas reinhardtii1[W

    PubMed Central

    Pérez-Martín, Marta; Pérez-Pérez, María Esther; Lemaire, Stéphane D.; Crespo, José L.

    2014-01-01

    The accumulation of unfolded/misfolded proteins in the endoplasmic reticulum (ER) results in the activation of stress responses, such as the unfolded protein response or the catabolic process of autophagy to ultimately recover cellular homeostasis. ER stress also promotes the production of reactive oxygen species, which play an important role in autophagy regulation. However, it remains unknown whether reactive oxygen species are involved in ER stress-induced autophagy. In this study, we provide evidence connecting redox imbalance caused by ER stress and autophagy activation in the model unicellular green alga Chlamydomonas reinhardtii. Treatment of C. reinhardtii cells with the ER stressors tunicamycin or dithiothreitol resulted in up-regulation of the expression of genes encoding ER resident endoplasmic reticulum oxidoreductin1 oxidoreductase and protein disulfide isomerases. ER stress also triggered autophagy in C. reinhardtii based on the protein abundance, lipidation, cellular distribution, and mRNA levels of the autophagy marker ATG8. Moreover, increases in the oxidation of the glutathione pool and the expression of oxidative stress-related genes were detected in tunicamycin-treated cells. Our results revealed that the antioxidant glutathione partially suppressed ER stress-induced autophagy and decreased the toxicity of tunicamycin, suggesting that oxidative stress participates in the control of autophagy in response to ER stress in C. reinhardtii In close agreement, we also found that autophagy activation by tunicamycin was more pronounced in the C. reinhardtii sor1 mutant, which shows increased expression of oxidative stress-related genes. PMID:25143584

  4. Effect of Surface Roughness on Hydrodynamic Bearings

    NASA Technical Reports Server (NTRS)

    Majumdar, B. C.; Hamrock, B. J.

    1981-01-01

    A theoretical analysis on the performance of hydrodynamic oil bearings is made considering surface roughness effect. The hydrodynamic as well as asperity contact load is found. The contact pressure was calculated with the assumption that the surface height distribution was Gaussian. The average Reynolds equation of partially lubricated surface was used to calculate hydrodynamic load. An analytical expression for average gap was found and was introduced to modify the average Reynolds equation. The resulting boundary value problem was then solved numerically by finite difference methods using the method of successive over relaxation. The pressure distribution and hydrodynamic load capacity of plane slider and journal bearings were calculated for various design data. The effects of attitude and roughness of surface on the bearing performance were shown. The results are compared with similar available solution of rough surface bearings. It is shown that: (1) the contribution of contact load is not significant; and (2) the hydrodynamic and contact load increase with surface roughness.

  5. Simplified models for mask roughness induced LER

    SciTech Connect

    McClinton, Brittany; Naulleau, Patrick

    2011-02-21

    The ITRS requires < 1.2nm line-edge roughness (LER) for the 22nm half-pitch node. Currently, we can consistently achieve only about 3nm LER. Further progress requires understanding the principle causes of LER. Much work has already been done on how both the resist and LER on the mask effect the final printed LER. What is poorly understood, however, is the extent to which system-level effects such as mask surface roughness, illumination conditions, and defocus couple to speckle at the image plane, and factor into LER limits. Presently, mask-roughness induced LER is studied via full 2D aerial image modeling and subsequent analysis of the resulting image. This method is time consuming and cumbersome. It is, therefore, the goal of this research to develop a useful 'rule-of-thumb' analytic model for mask roughness induced LER to expedite learning and understanding.

  6. Surface roughness effects on bidirectional reflectance

    NASA Technical Reports Server (NTRS)

    Smith, T. F.; Hering, R. G.

    1972-01-01

    An experimental study of surface roughness effects on bidirectional reflectance of metallic surfaces is presented. A facility capable of irradiating a sample from normal to grazing incidence and recording plane of incidence bidirectional reflectance measurements was developed. Samples consisting of glass, aluminum alloy, and stainless steel materials were selected for examination. Samples were roughened using standard grinding techniques and coated with a radiatively opaque layer of pure aluminum. Mechanical surface roughness parameters, rms heights and rms slopes, evaluated from digitized surface profile measurements are less than 1.0 micrometers and 0.28, respectively. Rough surface specular, bidirectional, and directional reflectance measurements for selected values of polar angle of incidence and wavelength of incident energy within the spectral range of 1 to 14 micrometers are reported. The Beckmann bidirectional reflectance model is compared with reflectance measurements to establish its usefulness in describing the magnitude and spatial distribution of energy reflected from rough surfaces.

  7. Stellar Oxygen Abundances

    NASA Astrophysics Data System (ADS)

    King, Jeremy

    1994-04-01

    This dissertation addresses several issues concerning stellar oxygen abundances. The 7774 {\\AA} O I triplet equivalent widths of Abia & Rebolo [1989, AJ, 347, 186] for metal-poor dwarfs are found to be systematically too high. I also argue that current effective temperatures used in halo star abundance studies may be ~150 K too low. New color-Teff relations are derived for metal-poor stars. Using the revised Teff values and improved equivalent widths for the 7774A O I triplet, the mean [O/Fe] ratio for a handful of halo stars is found to be +0.52 with no dependence on Teff or [Fe/H]. Possible cosmological implications of the hotter Teff scale are discussed along with additional evidence supporting the need for a higher temperature scale for metal-poor stars. Our Teff scale leads to a Spite Li plateau value of N(Li)=2.28 +/- 0.09. A conservative minimal primordial value of N(Li)=2.35 is inferred. If errors in the observations and models are considered, consistency with standard models of Big Bang nucleosynthesis is still achieved with this larger Li abundance. The revised Teff scale raises the observed B/Be ratio of HD 140283 from 10 to 12, making its value more comfortably consistent with the production of the observed B and Be by ordinary spallation. Our Teff values are found to be in good agreement with values predicted from both the Victoria and Yale isochrone color-Teff relations. Thus, it appears likely that no changes in globular cluster ages would result. Next, we examine the location of the break in the [O/Fe] versus [Fe/H] plane in a quantitative fashion. Analysis of a relatively homogeneous data set does not favor any unique break point in the range -1.7 /= -3), in agreement with the new results for halo dwarfs. We find that the gap in the observed [O/H] distribution, noted by Wheeler et al

  8. Abundances of light elements.

    PubMed Central

    Pagel, B E

    1993-01-01

    Recent developments in the study of abundances of light elements and their relevance to cosmological nucleosynthesis are briefly reviewed. The simplest model, based on standard cosmology and particle physics and assuming homogeneous baryon density at the relevant times, continues to stand up well. PMID:11607388

  9. How supercontinents and superoceans affect seafloor roughness.

    PubMed

    Whittaker, Joanne M; Müller, R Dietmar; Roest, Walter R; Wessel, Paul; Smith, Walter H F

    2008-12-18

    Seafloor roughness varies considerably across the world's ocean basins and is fundamental to controlling the circulation and mixing of heat in the ocean and dissipating eddy kinetic energy. Models derived from analyses of active mid-ocean ridges suggest that ocean floor roughness depends on seafloor spreading rates, with rougher basement forming below a half-spreading rate threshold of 30-35 mm yr(-1) (refs 4, 5), as well as on the local interaction of mid-ocean ridges with mantle plumes or cold-spots. Here we present a global analysis of marine gravity-derived roughness, sediment thickness, seafloor isochrons and palaeo-spreading rates of Cretaceous to Cenozoic ridge flanks. Our analysis reveals that, after eliminating effects related to spreading rate and sediment thickness, residual roughness anomalies of 5-20 mGal remain over large swaths of ocean floor. We found that the roughness as a function of palaeo-spreading directions and isochron orientations indicates that most of the observed excess roughness is not related to spreading obliquity, as this effect is restricted to relatively rare occurrences of very high obliquity angles (>45 degrees ). Cretaceous Atlantic ocean floor, formed over mantle previously overlain by the Pangaea supercontinent, displays anomalously low roughness away from mantle plumes and is independent of spreading rates. We attribute this observation to a sub-Pangaean supercontinental mantle temperature anomaly leading to slightly thicker than normal Late Jurassic and Cretaceous Atlantic crust, reduced brittle fracturing and smoother basement relief. In contrast, ocean crust formed above Pacific superswells, probably reflecting metasomatized lithosphere underlain by mantle at only slightly elevated temperatures, is not associated with basement roughness anomalies. These results highlight a fundamental difference in the nature of large-scale mantle upwellings below supercontinents and superoceans, and their impact on oceanic crustal

  10. Initiative learning algorithm based on rough set

    NASA Astrophysics Data System (ADS)

    Wang, Guoyin; He, Xiao

    2003-03-01

    Rough set theory is emerging as a new tool for dealing with fuzzy and uncertain data. In this paper, a theory is developed to express, measure and process uncertain information and uncertain knowledge based on our result about the uncertainty measure of decision tables and decision rule systems. Based on Skowron"s propositional default rule generation algorithm, we develop an initiative learning model with rough set based initiative rule generation algorithm. Simulation results illustrate its efficiency.

  11. Rough surface reconstruction for ultrasonic NDE simulation

    SciTech Connect

    Choi, Wonjae; Shi, Fan; Lowe, Michael J. S.; Skelton, Elizabeth A.; Craster, Richard V.

    2014-02-18

    The reflection of ultrasound from rough surfaces is an important topic for the NDE of safety-critical components, such as pressure-containing components in power stations. The specular reflection from a rough surface of a defect is normally lower than it would be from a flat surface, so it is typical to apply a safety factor in order that justification cases for inspection planning are conservative. The study of the statistics of the rough surfaces that might be expected in candidate defects according to materials and loading, and the reflections from them, can be useful to develop arguments for realistic safety factors. This paper presents a study of real rough crack surfaces that are representative of the potential defects in pressure-containing power plant. Two-dimensional (area) values of the height of the roughness have been measured and their statistics analysed. Then a means to reconstruct model cases with similar statistics, so as to enable the creation of multiple realistic realizations of the surfaces, has been investigated, using random field theory. Rough surfaces are reconstructed, based on a real surface, and results for these two-dimensional descriptions of the original surface have been compared with those from the conventional model based on a one-dimensional correlation coefficient function. In addition, ultrasonic reflections from them are simulated using a finite element method.

  12. Endoplasmic Reticulum Stress and the Inflammatory Basis of Metabolic Disease

    PubMed Central

    Hotamisligil, Gökhan S.

    2010-01-01

    The endoplasmic reticulum (ER) is the major site in the cell for protein folding and trafficking and is central to many cellular functions. Failure of the ER's adaptive capacity results in activation of the unfolded protein response (UPR), which intersects with many different inflammatory and stress signaling pathways. These pathways are also critical in chronic metabolic diseases such as obesity, insulin resistance, and type 2 diabetes. The ER and related signaling networks are emerging as a potential site for the intersection of inflammation and metabolic disease. PMID:20303879

  13. One step at a time: endoplasmic reticulum-associated degradation

    PubMed Central

    Vembar, Shruthi S.; Brodsky, Jeffrey L.

    2009-01-01

    Protein folding in the endoplasmic reticulum (ER) is monitored by ER quality control (ERQC) mechanisms. Proteins that pass ERQC criteria traffic to their final destinations through the secretory pathway, whereas non-native and unassembled subunits of multimeric proteins are degraded by the ER-associated degradation (ERAD) pathway. During ERAD, molecular chaperones and associated factors recognize and target substrates for retrotranslocation to the cytoplasm, where they are degraded by the ubiquitin–proteasome machinery. The discovery of diseases that are associated with ERAD substrates highlights the importance of this pathway. Here, we summarize our current understanding of each step during ERAD, with emphasis on the factors that catalyse distinct activities. PMID:19002207

  14. Endoplasmic reticulum stress: an unrecognized actor in solid organ transplantation.

    PubMed

    Pallet, Nicolas; Fougeray, Sophie; Beaune, Philippe; Legendre, Christophe; Thervet, Eric; Anglicheau, Dany

    2009-09-15

    Endoplasmic reticulum (ER) stress is an adaptive response to the accumulation of misfolded proteins within the ER, which can trigger cell dedifferentiation and cell suicide. Increasing evidences suggest its implication in mediating allograft injury. Herein, we summarize the mechanisms of ER stress and discuss its implication in allograft injury. Increasing our understanding of the cellular and molecular mechanisms of acute and chronic allograft damages could lead to the development of new biomarkers and to the discovery of new therapeutic strategies to prevent the initiation of graft dysfunction or to promote the tissue regeneration after injury. PMID:19741454

  15. Proplatelet formation in megakaryocytes is associated with endoplasmic reticulum stress.

    PubMed

    Morishima, Nobuhiro; Nakanishi, Keiko

    2016-07-01

    Although previous studies suggest that proplatelet formation in megakaryocytes involves caspase-3, the mechanism underlying the activation of caspase-3 is unknown. Here, we analyzed caspase activation in a human megakaryoblastic cell line, MEG-01, which forms proplatelets spontaneously. Specific activation of caspase-3 and caspase-4 was found in proplatelets. Consistent with previous observations of caspase-4 autoactivation in response to endoplasmic reticulum (ER) stress, several ER stress marker proteins were expressed during proplatelet formation. A pharmacological ER stressor enhanced platelet production via proplatelet formation, whereas inhibition of caspase-4 caused suppression. These results suggest that ER stress is a mechanism underlying the maturation of megakaryocytes. PMID:27296088

  16. Data supporting characterization of CLIC1, CLIC4, CLIC5 and DmCLIC antibodies and localization of CLICs in endoplasmic reticulum of cardiomyocytes.

    PubMed

    Ponnalagu, Devasena; Rao, Shubha Gururaja; Farber, Jason; Xin, Wenyu; Hussain, Ahmed Tafsirul; Shah, Kajol; Tanda, Soichi; Berryman, Mark A; Edwards, John C; Singh, Harpreet

    2016-06-01

    Chloride intracellular channel (CLICs) proteins show 60-70% sequence identity to each other, and exclusively localize to the intracellular organelle membranes and cytosol. In support of our recent publication, "Molecular identity of cardiac mitochondrial chloride intracellular channel proteins" (Ponnalagu et al., 2016) [1], it was important to characterize the specificity of different CLIC paralogs/ortholog (CLIC1, CLIC4, CLIC5 and DmCLIC) antibodies used to decipher their localization in cardiac cells. In addition, localization of CLICs in the other organelles such as endoplasmic reticulum (ER) of cardiomyocytes was established. This article also provides data on the different primers used to show the relative abundance of CLIC paralogs in cardiac tissue and the specificity of the various CLIC antibodies used. We demonstrate that the predominant CLICs in the heart, namely CLIC1, CLIC4 and CLIC5, show differential distribution in endoplasmic reticulum. CLIC1 and CLIC4 both show co-localization to the endoplasmic reticulum whereas CLIC5 does not. PMID:27104215

  17. Data supporting characterization of CLIC1, CLIC4, CLIC5 and DmCLIC antibodies and localization of CLICs in endoplasmic reticulum of cardiomyocytes

    PubMed Central

    Ponnalagu, Devasena; Rao, Shubha Gururaja; Farber, Jason; Xin, Wenyu; Hussain, Ahmed Tafsirul; Shah, Kajol; Tanda, Soichi; Berryman, Mark A.; Edwards, John C.; Singh, Harpreet

    2016-01-01

    Chloride intracellular channel (CLICs) proteins show 60–70% sequence identity to each other, and exclusively localize to the intracellular organelle membranes and cytosol. In support of our recent publication, “Molecular identity of cardiac mitochondrial chloride intracellular channel proteins” (Ponnalagu et al., 2016) [1], it was important to characterize the specificity of different CLIC paralogs/ortholog (CLIC1, CLIC4, CLIC5 and DmCLIC) antibodies used to decipher their localization in cardiac cells. In addition, localization of CLICs in the other organelles such as endoplasmic reticulum (ER) of cardiomyocytes was established. This article also provides data on the different primers used to show the relative abundance of CLIC paralogs in cardiac tissue and the specificity of the various CLIC antibodies used. We demonstrate that the predominant CLICs in the heart, namely CLIC1, CLIC4 and CLIC5, show differential distribution in endoplasmic reticulum. CLIC1 and CLIC4 both show co-localization to the endoplasmic reticulum whereas CLIC5 does not. PMID:27104215

  18. HIF-2α dependent lipid storage promotes endoplasmic reticulum homeostasis in clear cell renal cell carcinoma

    PubMed Central

    Qiu, Bo; Ackerman, Daniel; Sanchez, Danielle J.; Li, Bo; Ochocki, Joshua D.; Grazioli, Alison; Bobrovnikova-Marjon, Ekaterina; Diehl, J. Alan; Keith, Brian; Simon, M. Celeste

    2015-01-01

    Two hallmarks of clear cell renal cell carcinoma (ccRCC) are constitutive hypoxia inducible factor (HIF) signaling and abundant intracellular lipid droplets (LDs). However, regulation of lipid storage and its role in ccRCC are incompletely understood. Transcriptional profiling of primary ccRCC samples revealed that expression of the LD coat protein gene PLIN2 was elevated in tumors and correlated with HIF-2α, but not HIF-1α, activation. HIF-2α dependent PLIN2 expression promoted lipid storage, proliferation, and viability in xenograft tumors. Mechanistically, lipid storage maintained integrity of the endoplasmic reticulum (ER), which is functionally and physically associated with LDs. Specifically, PLIN2 dependent lipid storage suppressed cytotoxic ER stress responses that otherwise result from elevated protein synthetic activity characteristic of ccRCC cells. Thus, in addition to promoting ccRCC proliferation and anabolic metabolism, HIF-2α modulates lipid storage to sustain ER homeostasis, particularly under conditions of nutrient and oxygen limitation, thereby promoting tumor cell survival. PMID:25829424

  19. Endoplasmic reticulum chaperones and oxidoreductases: critical regulators of tumor cell survival and immunorecognition.

    PubMed

    Gutiérrez, Tomás; Simmen, Thomas

    2014-01-01

    Endoplasmic reticulum (ER) chaperones and oxidoreductases are abundant enzymes that mediate the production of fully folded secretory and transmembrane proteins. Resisting the Golgi and plasma membrane-directed "bulk flow," ER chaperones and oxidoreductases enter retrograde trafficking whenever they are pulled outside of the ER by their substrates. Solid tumors are characterized by the increased production of reactive oxygen species (ROS), combined with reduced blood flow that leads to low oxygen supply and ER stress. Under these conditions, hypoxia and the unfolded protein response upregulate their target genes. When this occurs, ER oxidoreductases and chaperones become important regulators of tumor growth. However, under these conditions, these proteins not only promote the folding of proteins, but also alter the properties of the plasma membrane and hence modulate tumor immune recognition. For instance, high levels of calreticulin serve as an "eat-me" signal on the surface of tumor cells. Conversely, both intracellular and surface BiP/GRP78 promotes tumor growth. Other ER folding assistants able to modulate the properties of tumor tissue include protein disulfide isomerase (PDI), Ero1α and GRP94. Understanding the roles and mechanisms of ER chaperones in regulating tumor cell functions and immunorecognition will lead to important insight for the development of novel cancer therapies. PMID:25386408

  20. Cannabidiol protects oligodendrocyte progenitor cells from inflammation-induced apoptosis by attenuating endoplasmic reticulum stress.

    PubMed

    Mecha, M; Torrao, A S; Mestre, L; Carrillo-Salinas, F J; Mechoulam, R; Guaza, C

    2012-01-01

    Cannabidiol (CBD) is the most abundant cannabinoid in Cannabis sativa that has no psychoactive properties. CBD has been approved to treat inflammation, pain and spasticity associated with multiple sclerosis (MS), of which demyelination and oligodendrocyte loss are hallmarks. Thus, we investigated the protective effects of CBD against the damage to oligodendrocyte progenitor cells (OPCs) mediated by the immune system. Doses of 1 μM CBD protect OPCs from oxidative stress by decreasing the production of reactive oxygen species. CBD also protects OPCs from apoptosis induced by LPS/IFNγ through the decrease of caspase 3 induction via mechanisms that do not involve CB1, CB2, TRPV1 or PPARγ receptors. Tunicamycin-induced OPC death was attenuated by CBD, suggesting a role of endoplasmic reticulum (ER) stress in the mode of action of CBD. This protection against ER stress-induced apoptosis was associated with reduced phosphorylation of eiF2α, one of the initiators of the ER stress pathway. Indeed, CBD diminished the phosphorylation of PKR and eiF2α induced by LPS/IFNγ. The pro-survival effects of CBD in OPCs were accompanied by decreases in the expression of ER apoptotic effectors (CHOP, Bax and caspase 12), and increased expression of the anti-apoptotic Bcl-2. These findings suggest that attenuation of the ER stress pathway is involved in the 'oligoprotective' effects of CBD during inflammation. PMID:22739983

  1. Identification of Novel Tau Interactions with Endoplasmic Reticulum Proteins in Alzheimer’s Disease Brain

    PubMed Central

    Meier, Shelby; Bell, Michelle; Lyons, Danielle N.; Ingram, Alexandria; Chen, Jing; Gensel, John C.; Zhu, Haining; Nelson, Peter T.; Abisambra, Jose F.

    2016-01-01

    Alzheimer’s disease (AD) is a progressive neurodegenerative disorder that is pathologically characterized by the formation of extracellular amyloid plaques and intraneuronal tau tangles. We recently identified that tau associates with proteins known to participate in endoplasmic reticulum (ER)-associated degradation (ERAD); consequently, ERAD becomes dysfunctional and causes neurotoxicity. We hypothesized that tau associates with other ER proteins, and that this association could also lead to cellular dysfunction in AD. Portions of human AD and non-demented age matched control brains were fractionated to obtain microsomes, from which tau was co-immunoprecipitated. Samples from both conditions containing tau and its associated proteins were analyzed by mass spectrometry. In total, we identified 91 ER proteins that co-immunoprecipitated with tau; 15.4% were common between AD and control brains, and 42.9% only in the AD samples. The remainder, 41.8% of the proteins, was only seen in the control brain samples. We identified a variety of previously unreported interactions between tau and ER proteins. These proteins participate in over sixteen functional categories, the most abundant being involved in RNA translation. We then determined that association of tau with these ER proteins was different between the AD and control samples. We found that tau associated equally with the ribosomal protein L28 but more robustly with the ribosomal protein P0. These data suggest that the differential association between tau and ER proteins in disease could reveal the pathogenic processes by which tau induces cellular dysfunction. PMID:26402096

  2. The Hsp110 molecular chaperone stabilizes apolipoprotein B from endoplasmic reticulum-associated degradation (ERAD).

    PubMed

    Hrizo, Stacy L; Gusarova, Viktoria; Habiel, David M; Goeckeler, Jennifer L; Fisher, Edward A; Brodsky, Jeffrey L

    2007-11-01

    Apolipoprotein B (apoB) is the most abundant protein in low density lipoproteins and plays key roles in cholesterol homeostasis. The co-translational degradation of apoB is controlled by fatty acid levels in the endoplasmic reticulum (ER) and is mediated by the proteasome. To define the mechanism of apoB degradation, we employed a cell-free system in which proteasome-dependent degradation is recapitulated with yeast cytosol, and we developed an apoB yeast expression system. We discovered that a yeast Hsp110, Sse1p, associates with and stabilizes apoB, which contrasts with data indicating that select Hsp70s and Hsp90s facilitate apoB degradation. However, the Ssb Hsp70 chaperones have no effect on apoB turnover. To determine whether our results are relevant in mammalian cells, Hsp110 was overexpressed in hepatocytes, and enhanced apoB secretion was observed. This study indicates that chaperones within distinct complexes can play unique roles during ER-associated degradation (ERAD), establishes a role for Sse1/Hsp110 in ERAD, and identifies Hsp110 as a target to lower cholesterol. PMID:17823116

  3. Cannabidiol protects oligodendrocyte progenitor cells from inflammation-induced apoptosis by attenuating endoplasmic reticulum stress

    PubMed Central

    Mecha, M; Torrao, A S; Mestre, L; Carrillo-Salinas, F J; Mechoulam, R; Guaza, C

    2012-01-01

    Cannabidiol (CBD) is the most abundant cannabinoid in Cannabis sativa that has no psychoactive properties. CBD has been approved to treat inflammation, pain and spasticity associated with multiple sclerosis (MS), of which demyelination and oligodendrocyte loss are hallmarks. Thus, we investigated the protective effects of CBD against the damage to oligodendrocyte progenitor cells (OPCs) mediated by the immune system. Doses of 1 μM CBD protect OPCs from oxidative stress by decreasing the production of reactive oxygen species. CBD also protects OPCs from apoptosis induced by LPS/IFNγ through the decrease of caspase 3 induction via mechanisms that do not involve CB1, CB2, TRPV1 or PPARγ receptors. Tunicamycin-induced OPC death was attenuated by CBD, suggesting a role of endoplasmic reticulum (ER) stress in the mode of action of CBD. This protection against ER stress-induced apoptosis was associated with reduced phosphorylation of eiF2α, one of the initiators of the ER stress pathway. Indeed, CBD diminished the phosphorylation of PKR and eiF2α induced by LPS/IFNγ. The pro-survival effects of CBD in OPCs were accompanied by decreases in the expression of ER apoptotic effectors (CHOP, Bax and caspase 12), and increased expression of the anti-apoptotic Bcl-2. These findings suggest that attenuation of the ER stress pathway is involved in the ‘oligoprotective' effects of CBD during inflammation. PMID:22739983

  4. Solar abundance of iridium

    PubMed Central

    Drake, Stephen; Aller, Lawrence H.

    1976-01-01

    By a method of spectrum synthesis, which yields log gfA, where g is the statistical weight of the lower level, f is the oscillator strength, and A is the abundance, an attempt is made to deduce the solar iridium abundance from one relatively unblended, but fairly weak IrI line, λ 3220.78 Å. If the Corliss-Bozman f-value for this line is adopted, we find log A(Ir) = 0.82 on the scale log A(H) = 12.00. The discordance with the value found from carbonaceous chondrites may arise from faulty f-values or from difficulties arising from line blending in this far ultraviolet domain of the solar spectrum. PMID:16578735

  5. Fault slip distribution and fault roughness

    NASA Astrophysics Data System (ADS)

    Candela, Thibault; Renard, François; Schmittbuhl, Jean; Bouchon, Michel; Brodsky, Emily E.

    2011-11-01

    We present analysis of the spatial correlations of seismological slip maps and fault topography roughness, illuminating their identical self-affine exponent. Though the complexity of the coseismic spatial slip distribution can be intuitively associated with geometrical or stress heterogeneities along the fault surface, this has never been demonstrated. Based on new measurements of fault surface topography and on statistical analyses of kinematic inversions of slip maps, we propose a model, which quantitatively characterizes the link between slip distribution and fault surface roughness. Our approach can be divided into two complementary steps: (i) Using a numerical computation, we estimate the influence of fault roughness on the frictional strength (pre-stress). We model a fault as a rough interface where elastic asperities are squeezed. The Hurst exponent ?, characterizing the self-affinity of the frictional strength field, approaches ?, where ? is the roughness exponent of the fault surface in the direction of slip. (ii) Using a quasi-static model of fault propagation, which includes the effect of long-range elastic interactions and spatial correlations in the frictional strength, the spatial slip correlation is observed to scale as ?, where ? represents the Hurst exponent of the slip distribution. Under the assumption that the origin of the spatial fluctuations in frictional strength along faults is the elastic squeeze of fault asperities, we show that self-affine geometrical properties of fault surface roughness control slip correlations and that ?. Given that ? for a wide range of faults (various accumulated displacement, host rock and slip movement), we predict that ?. Even if our quasi-static fault model is more relevant for creeping faults, the spatial slip correlations observed are consistent with those of seismological slip maps. A consequence is that the self-affinity property of slip roughness may be explained by fault geometry without considering

  6. The work budget of rough faults

    NASA Astrophysics Data System (ADS)

    Newman, Patrick J.; Ashley Griffith, W.

    2014-12-01

    Faults in nature have measurable roughness at many scales and are not planar as generally idealized. We utilize the boundary element method to model the geomechanical response of synthetic rough faults in an isotropic, linear elastic continuum to external tectonic loading in terms of the work budget. Faults are generated with known fractal roughness parameters, including the root mean square slope (β), a measure of roughness amplitude, and the Hurst exponent (H), a measure of geometric self-similarity. Energy within the fault models is partitioned into external work (Wext), internal elastic strain energy (Wint), gravitational work (Wgrav), frictional work (Wfric), and seismic energy (Wseis). Results confirm that Wext, or work done on the external model boundaries, is smallest for a perfectly planar fault, and steadily increases with increasing β. This pattern is also observed in Wint, the energy expended in deforming the host rock. The opposite is true for gravitational work, or work done against gravity in uplifting host rock, as well as with frictional work, or energy dissipated with frictional slip on the fault, and Wseis, or seismic energy released during slip events. Effects of variation in H are not as large as for β, but Wgrav, Wfric, and Wseis increase with increasing H, with Wint and Wext decreasing across the same range. Remarkably, however, for a narrow range of roughness amplitudes which are commonly observed along natural faults, the total work of the system remains approximately constant, while slightly larger than the total work of a planar fault. Faults evolve toward the most mechanically efficient configuration; therefore we argue that this range of roughness amplitudes may represent an energy barrier, preventing faults from removing asperities and evolving to smooth, planar discontinuities. A similar conclusion is drawn from simulations at relatively shallow depths, with results showing that shallower faults have larger energy barriers, and can

  7. XBP1 Regulates the Biosynthetic Capacity of the Mammary Gland During Lactation by Controlling Epithelial Expansion and Endoplasmic Reticulum Formation.

    PubMed

    Davis, Kristen R; Giesy, Sarah L; Long, Qiaoming; Krumm, Christopher S; Harvatine, Kevin J; Boisclair, Yves R

    2016-01-01

    Cells composing the mammary secretory compartment have evolved a high capacity to secrete not only proteins but also triglycerides and carbohydrates. This feature is illustrated by the mouse, which can secrete nearly twice its own weight in milk proteins, triglycerides and lactose over a short 20-day lactation. The coordination of synthesis and export of products in other secretory cells is orchestrated in part by the transcription factor X-box binding protein 1 (XBP1). To assess the role of XBP1 in mammary epithelial cells (MEC), we studied floxed XBP1 female mice lacking (wild type; WT) or expressing the Cre recombinase under the control of the ovine β-lactoglobulin promoter (ΔXBP1(MEC)). Pregnant ΔXBP1(MEC) females had morphologically normal mammary development and gave birth to the same number of pups as WT mice. Their litters, however, suffered a weight gain deficit by lactation day 3 (L3)3 that grew to 80% by L14. ΔXBP1(MEC) dams had only modest changes in milk composition (-21% protein, +24% triglyceride) and in the expression of associated genes in isolated MEC. By L5, WT glands were fully occupied by dilated alveoli, whereas ΔXBP1(MEC) glands contained fewer, mostly unfilled alveoli and retained a prominent adipocyte population. The smaller epithelial compartment in ΔXBP1(MEC) glands was explained by lower MEC proliferation and increased apoptosis. Finally, endoplasmic reticulum ribbons were less abundant in ΔXBP1(MEC) at pregnancy day 18 and failed to increase in abundance by L5. Collectively, these results show that XBP1 is required for MEC population expansion during lactation and its ability to develop an elaborate endoplasmic reticulum compartment. PMID:26562262

  8. The liver isoform of carnitine palmitoyltransferase 1 is not targeted to the endoplasmic reticulum.

    PubMed Central

    Broadway, Neil M; Pease, Richard J; Birdsey, Graeme; Shayeghi, Majid; Turner, Nigel A; David Saggerson, E

    2003-01-01

    Liver microsomal fractions contain a malonyl-CoA-inhibitable carnitine acyltransferase (CAT) activity. It has been proposed [Fraser, Corstorphine, Price and Zammit (1999) FEBS Lett. 446, 69-74] that this microsomal CAT activity is due to the liver form of carnitine palmitoyltransferase 1 (L-CPT1) being targeted to the endoplasmic reticulum (ER) membrane as well as to mitochondria, possibly by an N-terminal signal sequence [Cohen, Guillerault, Girard and Prip-Buus (2001) J. Biol. Chem. 276, 5403-5411]. COS-1 cells were transiently transfected to express a fusion protein in which enhanced green fluorescent protein was fused to the C-terminus of L-CPT1. Confocal microscopy showed that this fusion protein was localized to mitochondria, and possibly to peroxisomes, but not to the ER. cDNAs corresponding to truncated (amino acids 1-328) or full-length L-CPT1 were transcribed and translated in the presence of canine pancreatic microsomes. However, there was no evidence of authentic insertion of CPT1 into the ER membrane. Rat liver microsomal fractions purified by sucrose-density-gradient centrifugation contained an 88 kDa protein (p88) which was recognized by an anti-L-CPT1 antibody and by 2,4-dinitrophenol-etomoxiryl-CoA, a covalent inhibitor of L-CPT1. Abundance of p88 and malonyl-CoA-inhibitable CAT activity were increased approx. 3-fold by starvation for 24 h. Deoxycholate solubilized p88 and malonyl-CoA-inhibitable CAT activity from microsomes to approximately the same extent. The microsomal fraction contained porin, which, relative to total protein, was as abundant as in crude mitochondrial outer membranes fractions. It is concluded that L-CPT1 is not targeted to the ER membrane and that malonyl-CoA CAT in microsomal fractions is L-CPT1 that is derived from mitochondria, possibly from membrane contact sites. PMID:12401113

  9. Molecular Characterization of Endoplasmic Reticulum Oxidoreductin 1 from Bombyx mori

    PubMed Central

    Seo, Minchul; Ryou, Hee-Joo; Yun, Eun-Young; Goo, Tae-Won

    2015-01-01

    We isolated a complementary DNA (cDNA) clone encoding endoplasmic reticulum oxidoreductin 1 (bERO1, a specific oxidant of protein disulfide isomerase (PDI)) from Bombyx mori. This protein has a putative open reading frame (ORF) of 489 amino acids and a predicted size of 57.4 kDa. Although bERO1 protein shares less than 57% amino acid sequence homology with other reported ERO1s, it contains two conserved redox active motifs, a Cys-X-X-X-X-Cys motif of N-terminal and Cys-X-X-Cys-X-X-Cys motif of C-terminal. Both motifs are typically present in ERO1 protein family members. The bEro1 mRNA expression was highest in posterior silk gland on the sixth day of the 5th instar larvae. Expression of bEro1 mRNA also markedly increased during endoplasmic reticulum (ER) stress induced by stimulation with antimycin, calcium ionophore A23187, dithiothreitol, H2O2, monencin, and tunicamycin. In addition, expression levels of bEro1 exactly coincided with that of bPdi. This is the first result suggesting that bERO1 plays an essential role in ER quality control through the combined activities of bERO1 and bPDI as a catalyst of protein folding in the ER and sustaining cellular redox homeostasis. PMID:26556347

  10. The Cdc48 machine in endoplasmic reticulum associated protein degradation.

    PubMed

    Wolf, Dieter H; Stolz, Alexandra

    2012-01-01

    The AAA-type ATPase Cdc48 (named p97/VCP in mammals) is a molecular machine in all eukaryotic cells that transforms ATP hydrolysis into mechanic power to unfold and pull proteins against physical forces, which make up a protein's structure and hold it in place. From the many cellular processes, Cdc48 is involved in, its function in endoplasmic reticulum associated protein degradation (ERAD) is understood best. This quality control process for proteins of the secretory pathway scans protein folding and discovers misfolded proteins in the endoplasmic reticulum (ER), the organelle, destined for folding of these proteins and their further delivery to their site of action. Misfolded lumenal and membrane proteins of the ER are detected by chaperones and lectins and retro-translocated out of the ER for degradation. Here the Cdc48 machinery, recruited to the ER membrane, takes over. After polyubiquitylation of the protein substrate, Cdc48 together with its dimeric co-factor complex Ufd1-Npl4 pulls the misfolded protein out and away from the ER membrane and delivers it to down-stream components for degradation by a cytosolic proteinase machine, the proteasome. The known details of the Cdc48-Ufd1-Npl4 motor complex triggered process are subject of this review article. PMID:21945179

  11. Ricin A chain reaches the endoplasmic reticulum after endocytosis

    SciTech Connect

    Liu Qiong; Zhan Jinbiao . E-mail: jzhan2k@zju.edu.cn; Chen Xinhong; Zheng Shu

    2006-05-12

    Ricin is a potent ribosome inactivating protein and now has been widely used for synthesis of immunotoxins. To target ribosome in the mammalian cytosol, ricin must firstly retrograde transport from the endomembrane system to reach the endoplasmic reticulum (ER) where the ricin A chain (RTA) is recognized by ER components that facilitate its membrane translocation to the cytosol. In the study, the fusion gene of enhanced green fluorescent protein (EGFP)-RTA was expressed with the pET-28a (+) system in Escherichia coli under the control of a T7 promoter. The fusion protein showed a green fluorescence. The recombinant protein can be purified by metal chelated affinity chromatography on a column of NTA. The rabbit anti-GFP antibody can recognize the fusion protein of EGFP-RTA just like the EGFP protein. The cytotoxicity of EGFP-RTA and RTA was evaluated by the MTT assay in HeLa and HEP-G2 cells following fluid-phase endocytosis. The fusion protein had a similar cytotoxicity of RTA. After endocytosis, the subcellular location of the fusion protein can be observed with the laser scanning confocal microscopy and the immuno-gold labeling Electro Microscopy. This study provided important evidence by a visualized way to prove that RTA does reach the endoplasmic reticulum.

  12. Mitochondria and endoplasmic reticulum crosstalk in amyotrophic lateral sclerosis.

    PubMed

    Manfredi, Giovanni; Kawamata, Hibiki

    2016-06-01

    Physical and functional interactions between mitochondria and the endoplasmic reticulum (ER) are crucial for cell life. These two organelles are intimately connected and collaborate to essential processes, such as calcium homeostasis and phospholipid biosynthesis. The connections between mitochondria and endoplasmic reticulum occur through structures named mitochondria associated membranes (MAMs), which contain lipid rafts and a large number of proteins, many of which serve multiple functions at different cellular sites. Growing evidence strongly suggests that alterations of ER-mitochondria interactions are involved in neurodegenerative disorders, including amyotrophic lateral sclerosis (ALS), a devastating and rapidly fatal motor neuron disease. Mutations in proteins that participate in ER-mitochondria interactions and MAM functions are increasingly being associated with genetic forms of ALS and other neurodegenerative diseases. This evidence strongly suggests that, rather than considering the two organelles separately, a better understanding of the disease process can derive from studying the alterations in their crosstalk. In this review we discuss normal and pathological ER-mitochondria interactions and the evidence that link them to ALS. PMID:26282323

  13. Molecular Characterization of Endoplasmic Reticulum Oxidoreductin 1 from Bombyx mori.

    PubMed

    Seo, Minchul; Ryou, Hee-Joo; Yun, Eun-Young; Goo, Tae-Won

    2015-01-01

    We isolated a complementary DNA (cDNA) clone encoding endoplasmic reticulum oxidoreductin 1 (bERO1, a specific oxidant of protein disulfide isomerase (PDI)) from Bombyx mori. This protein has a putative open reading frame (ORF) of 489 amino acids and a predicted size of 57.4 kDa. Although bERO1 protein shares less than 57% amino acid sequence homology with other reported ERO1s, it contains two conserved redox active motifs, a Cys-X-X-X-X-Cys motif of N-terminal and Cys-X-X-Cys-X-X-Cys motif of C-terminal. Both motifs are typically present in ERO1 protein family members. The bEro1 mRNA expression was highest in posterior silk gland on the sixth day of the 5th instar larvae. Expression of bEro1 mRNA also markedly increased during endoplasmic reticulum (ER) stress induced by stimulation with antimycin, calcium ionophore A23187, dithiothreitol, H₂O₂, monencin, and tunicamycin. In addition, expression levels of bEro1 exactly coincided with that of bPdi. This is the first result suggesting that bERO1 plays an essential role in ER quality control through the combined activities of bERO1 and bPDI as a catalyst of protein folding in the ER and sustaining cellular redox homeostasis. PMID:26556347

  14. Molecular Characterization of the Endoplasmic Reticulum: insights from proteomic studies

    PubMed Central

    Chen, Xuequn; Karnovsky, Alla; Sans, Maria Dolors; Andrews, Philip C.; Williams, John A.

    2012-01-01

    The endoplasmic reticulum (ER) is a multifunctional intracellular organelle responsible for the synthesis, processing and trafficking of a wide variety of proteins essential for cell growth and survival. Thesefore, comprehensive characterization of the ER proteome is of great importance to the understanding of its functions and has been actively pursued in the past decade by scientists in the proteomics field. This review summarizes major proteomic studies published in the past decade that focused on the ER proteome. We evaluate the data sets obtained from two different organs, liver and pancreas each of which contains a primary cell type (hepatocyte and acinar cell) with specialized functions. We also discuss how the nature of the proteins uncovered is related to the methods of organelle purification, organelle purity and the techniques used for protein separation prior to mass spectrometry. In addition, this review also puts emphasis on the biological insights gained from these studies regarding to the molecular functions of the endoplasmic reticulum including protein synthesis and translocation, protein folding and quality control, ER-associated degradation and ER stress, ER export and membrane trafficking, calcium homeostasis, and detoxification and drug metabolism. PMID:21080494

  15. [Involvement of endoplasmic reticulum stress in solid organ transplantation].

    PubMed

    Pallet, Nicolas; Bouvier, Nicolas; Beaune, Philippe; Legendre, Christophe; Anglicheau, Dany; Thervet, Eric

    2010-04-01

    Endoplasmic reticulum (ER) stress is a situation caused by the accumulation of unfolded proteins in the endoplasmic reticulum, triggering an evolutionary conserved adaptive response termed the unfolded protein response. When adaptation fails, excessive and prolonged ER stress triggers cell suicide. Important roles for ER-initiated cell death pathways have been recognized for several diseases, including diabetes, hypoxia, ischemia/reperfusion injury, neurodegenerative and heart diseases. The implication of the ER stress is not well recognized in solid organ transplantation, but increasing evidence suggests its implication in mediating allograft injury. The purpose of this review is to summarize the mechanisms of ER stress and to discuss its implication during tissue injury in solid organ transplantation. The possible implications of the ER stress in the modifications of cell functional properties and phenotypic changes are also discussed beyond the scope of adaptation and cell death. Increasing the understanding of the cellular and molecular mechanisms of acute and chronic allograft damages could lead to the development of new biomarkers and to the discovery of new therapeutic strategies to prevent the initiation of graft dysfunction or to promote the tissue regeneration after injury. PMID:20412745

  16. Hypersonic Viscous Flow Over Large Roughness Elements

    NASA Technical Reports Server (NTRS)

    Chang, Chau-Lyan; Choudhari, Meelan M.

    2009-01-01

    Viscous flow over discrete or distributed surface roughness has great implications for hypersonic flight due to aerothermodynamic considerations related to laminar-turbulent transition. Current prediction capability is greatly hampered by the limited knowledge base for such flows. To help fill that gap, numerical computations are used to investigate the intricate flow physics involved. An unstructured mesh, compressible Navier-Stokes code based on the space-time conservation element, solution element (CESE) method is used to perform time-accurate Navier-Stokes calculations for two roughness shapes investigated in wind tunnel experiments at NASA Langley Research Center. It was found through 2D parametric study that at subcritical Reynolds numbers, spontaneous absolute instability accompanying by sustained vortex shedding downstream of the roughness is likely to take place at subsonic free-stream conditions. On the other hand, convective instability may be the dominant mechanism for supersonic boundary layers. Three-dimensional calculations for both a rectangular and a cylindrical roughness element at post-shock Mach numbers of 4.1 and 6.5 also confirm that no self-sustained vortex generation from the top face of the roughness is observed, despite the presence of flow unsteadiness for the smaller post-shock Mach number case.

  17. Correlation of Windspeed and Antarctic Surface Roughness

    NASA Astrophysics Data System (ADS)

    Stockham, Mark; Anita Collaboration

    2015-04-01

    When electromagnetic waves interact with a media interface the transmitted and reflected portions of the incoming wave depend on the incident angle of the wave and wavelength (as well as the material properties of the media). The roughness of the surface of Antarctica affects the radio frequency signals received by airborne experiments, such as the balloon-borne experiment ANITA (ANtarctic Impulsive Transient Antenna) which observes the reflected radio waves from cosmic ray-induced extensive air showers (EAS). Roughness of a given scale can cause decoherence of the reflected signal and is an important effect to understand when estimating the amplitude of the incoming wave based on the reflected wave. It is challenging to get a survey of surface roughness over many of the areas that these experiments are likely to pass over. Correlating historical wind speed records with statistical roughness as observed by the backscatter of satellite [Rémy F, Parouty S. Remote Sensing. 2009] and airborne experiments operating at different frequencies can possibly be used to predict time-dependent surface roughness with surface wind speed as the input. These correlations will be presented for a variety of areas on the Antarctic ice shelf. NASA Grant NNX11AC47G.

  18. Interfacial roughness in ceramic matrix composites

    SciTech Connect

    Jero, P.D.; Parthasarathy, T.A.; Kerans, R.J.

    1992-08-01

    Recent work using push-out and push-back tests has shown that interfacial roughness contributes substantially to the sliding friction in at least some ceramic matrix composites (CMC's). Other work examining frictional heating of CMC's during cyclic fatigue has shown the important role that interfacial friction plays, and further that the interface is degraded upon extended cycling. From this it is apparent that interfacial roughness may play a key role in determining composite behavior. Although the observation of a seating drop during fiber push-back gives some information about the amplitude and spatial extent of the interfacial roughness, actual measurement of the roughness has proven difficult due to its extremely fine scale. In the present work, a laser interferometer has been used to examine the roughness of composite interfaces (both fiber and matrix) as well as virgin fibers. In addition, long range (mm scale) push-out tests have been followed by interferometric characterization to examine the severity and rate of interfacial degradation associated with fiber sliding. 4 refs.

  19. On roughness-induced transition - Facts, views, and speculations

    NASA Technical Reports Server (NTRS)

    Morkovin, Mark V.

    1990-01-01

    Roughness is considered as a steady passive device, and it is shown that roughness-induced separation is specifically sensitive to unsteady environmental forcing. The two-dimensional isolated roughness causing local upstream and downstream separations is considered, along with flows associated with the two-dimensional roughness and their relevance to the problem of distributed roughness. The difference between the two-dimensional isolated roughness and a three-dimensional isolated roughness at all Reynolds numbers is underlined, and the mechanisms and parameter conditions of a sudden breakdown of hairpin eddies are discussed, as well as flows over distributed roughness.

  20. Birbeck granule-like "organized smooth endoplasmic reticulum" resulting from the expression of a cytoplasmic YFP-tagged langerin.

    PubMed

    Lenormand, Cédric; Spiegelhalter, Coralie; Cinquin, Bertrand; Bardin, Sabine; Bausinger, Huguette; Angénieux, Catherine; Eckly, Anita; Proamer, Fabienne; Wall, David; Lich, Ben; Tourne, Sylvie; Hanau, Daniel; Schwab, Yannick; Salamero, Jean; de la Salle, Henri

    2013-01-01

    Langerin is required for the biogenesis of Birbeck granules (BGs), the characteristic organelles of Langerhans cells. We previously used a Langerin-YFP fusion protein having a C-terminal luminal YFP tag to dynamically decipher the molecular and cellular processes which accompany the traffic of Langerin. In order to elucidate the interactions of Langerin with its trafficking effectors and their structural impact on the biogenesis of BGs, we generated a YFP-Langerin chimera with an N-terminal, cytosolic YFP tag. This latter fusion protein induced the formation of YFP-positive large puncta. Live cell imaging coupled to a fluorescence recovery after photobleaching approach showed that this coalescence of proteins in newly formed compartments was static. In contrast, the YFP-positive structures present in the pericentriolar region of cells expressing Langerin-YFP chimera, displayed fluorescent recovery characteristics compatible with active membrane exchanges. Using correlative light-electron microscopy we showed that the coalescent structures represented highly organized stacks of membranes with a pentalaminar architecture typical of BGs. Continuities between these organelles and the rough endoplasmic reticulum allowed us to identify the stacks of membranes as a form of "Organized Smooth Endoplasmic Reticulum" (OSER), with distinct molecular and physiological properties. The involvement of homotypic interactions between cytoplasmic YFP molecules was demonstrated using an A206K variant of YFP, which restored most of the Langerin traffic and BG characteristics observed in Langerhans cells. Mutation of the carbohydrate recognition domain also blocked the formation of OSER. Hence, a "double-lock" mechanism governs the behavior of YFP-Langerin, where asymmetric homodimerization of the YFP tag and homotypic interactions between the lectin domains of Langerin molecules participate in its retention and the subsequent formation of BG-like OSER. These observations confirm that

  1. Localization of individual subunits of protein kinase CK2 to the endoplasmic reticulum and to the Golgi apparatus.

    PubMed

    Faust, M; Jung, M; Günther, J; Zimmermann, R; Montenarh, M

    2001-11-01

    The protein kinase CK2 is composed of two catalytic alpha- or alpha'- and two regulatory beta-subunits. In mammalian cells there is ample evidence for the presence of individual CK2 subunits beside the holoenzyme. By immunofluorescence studies using peptide antibodies which allow us to detect the CK2alpha-, alpha'- and beta-subunits we found all three subunits to be co-localized with a 58 KDa Golgi protein which is specific for the Golgi complex. Subfractionation studies using dog pancreas cells revealed the presence of all three subunits of CK2 at the smooth endoplasmic reticulum (sER)/Golgi fraction whereas the rough endoplasmic reticulum (rER) harboured only the catalytic alpha- and alpha'-subunits. We found that the microsomal preparation from dog pancreas cells contained CK2 which phosphorylated a CK2 specific synthetic peptide and which was heparin sensitive. Furthermore, we could immunoprecipitate the CK2alpha-subunit that exhibited a kinase activity which phosphorylated a CK2 specific substrate and which was heparin sensitive. Protease digestion experiments revealed that the CK2 subunits were located on the cytosolic side of the rER and the sER/Golgi complex. Thus, we could demonstrate an asymmetric distribution of the CK2 subunits at the rER and sER/Golgi complex. Since the CK2alpha- and alpha'-subunits exhibit a substrate specificity which is different from the CK2 holoenzyme one might speculate that the asymmetric distribution of the CK2 holoenzyme and the CK2 catalytic subunits may have regulatory functions. PMID:11827177

  2. Cell Death and Survival Through the Endoplasmic Reticulum-Mitochondrial Axis

    PubMed Central

    Bravo-Sagua, R.; Rodriguez, A.E.; Kuzmicic, J.; Gutierrez, T.; Lopez-Crisosto, C.; Quiroga, C.; Díaz-Elizondo, J.; Chiong, M.; Gillette, T.G.; Rothermel, B.A.; Lavandero, S.

    2014-01-01

    The endoplasmic reticulum has a central role in biosynthesis of a variety of proteins and lipids. Mitochondria generate ATP, synthesize and process numerous metabolites, and are key regulators of cell death. The architectures of endoplasmic reticulum and mitochondria change continually via the process of membrane fusion, fission, elongation, degradation, and renewal. These structural changes correlate with important changes in organellar function. Both organelles are capable of moving along the cytoskeleton, thus changing their cellular distribution. Numerous studies have demonstrated coordination and communication between mitochondria and endoplasmic reticulum. A focal point for these interactions is a zone of close contact between them known as the mitochondrial–associated endoplasmic reticulum membrane (MAM), which serves as a signaling juncture that facilitates calcium and lipid transfer between organelles. Here we review the emerging data on how communication between endoplasmic reticulum and mitochondria can modulate organelle function and determine cellular fate. PMID:23228132

  3. Cell death and survival through the endoplasmic reticulum-mitochondrial axis.

    PubMed

    Bravo-Sagua, R; Rodriguez, A E; Kuzmicic, J; Gutierrez, T; Lopez-Crisosto, C; Quiroga, C; Díaz-Elizondo, J; Chiong, M; Gillette, T G; Rothermel, B A; Lavandero, S

    2013-02-01

    The endoplasmic reticulum has a central role in biosynthesis of a variety of proteins and lipids. Mitochondria generate ATP, synthesize and process numerous metabolites, and are key regulators of cell death. The architectures of endoplasmic reticulum and mitochondria change continually via the process of membrane fusion, fission, elongation, degradation, and renewal. These structural changes correlate with important changes in organellar function. Both organelles are capable of moving along the cytoskeleton, thus changing their cellular distribution. Numerous studies have demonstrated coordination and communication between mitochondria and endoplasmic reticulum. A focal point for these interactions is a zone of close contact between them known as the mitochondrial-associated endoplasmic reticulum membrane (MAM), which serves as a signaling juncture that facilitates calcium and lipid transfer between organelles. Here we review the emerging data on how communication between endoplasmic reticulum and mitochondria can modulate organelle function and determine cellular fate. PMID:23228132

  4. Proteomic analysis of the transitional endoplasmic reticulum in hepatocellular carcinoma: an organelle perspective on cancer.

    PubMed

    Roy, Line; Laboissière, Sylvie; Abdou, Eman; Thibault, Geneviève; Hamel, Nathalie; Taheri, Maryam; Boismenu, Daniel; Lanoix, Joël; Kearney, Robert E; Paiement, Jacques

    2010-09-01

    The transitional endoplasmic reticulum (tER) is composed of both rough and smooth ER membranes and thus participates in functions attributed to both these two subcellular compartments. In this paper we have compared the protein composition of tER isolated from dissected liver tumor nodules of aflatoxin B1-treated rats with that of tER from control liver. Tandem mass spectrometry (MS), peptide counts and immunoblot validation were used to identify and determine the relative expression level of proteins. Inhibitors of apoptosis (i.e. PGRMC1, tripeptidyl peptidase II), proteins involved in ribosome biogenesis (i.e. nucleophosmin, nucleolin), proteins involved in translation (i.e. eEF-2, and subunits of eIF-3), proteins involved in ubiquitin metabolism (i.e. proteasome subunits, USP10) and proteins involved in membrane traffic (i.e. SEC13-like 1, SEC23B, dynactin 1) were found overexpressed in tumor tER. Transcription factors (i.e. Pur-beta, BTF3) and molecular targets for C-Myc and NF-kappa B were observed overexpressed in tER from tumor nodules. Down-regulated proteins included cytochrome P450 proteins and enzymes involved in fatty acid metabolism and in steroid metabolism. Unexpectedly expression of the protein folding machinery (i.e. calreticulin) and proteins of the MHC class I peptide-loading complex did not change. Proteins of unknown function were detected in association with the tER and the novel proteins showing differential expression are potential new tumor markers. In many cases differential expression of proteins in tumor tER was comparable to that of corresponding genes reported in the Oncomine human database. Thus the molecular profile of tumor tER is different and this may confer survival advantage to tumor cells in cancer. PMID:20576523

  5. Nongenomic STAT5-dependent effects on Golgi apparatus and endoplasmic reticulum structure and function.

    PubMed

    Lee, Jason E; Yang, Yang-Ming; Liang, Feng-Xia; Gough, Daniel J; Levy, David E; Sehgal, Pravin B

    2012-03-01

    We report unexpected nongenomic functions of signal transducer and activator of transcription (STAT) 5 species in the cytoplasm aimed at preserving the structure and function of the Golgi apparatus and rough endoplasmic reticulum (ER) in vascular cells. Immunoimaging and green fluorescent protein-tagged-STAT5a protein localization studies showed the constitutive association of nonphosphorylated STAT5a, and to a lesser extent STAT5b, with the Golgi apparatus and of STAT5a with centrosomes in human pulmonary arterial endothelial and smooth muscle cells. Acute knockdown of STAT5a/b species using small interfering RNAs (siRNAs), including in the presence of an mRNA synthesis inhibitor (5,6-dichloro-1-β-d-ribofuranosylbenzimidazole), produced a dramatic phenotype within 1 day, consisting of dilatation and fragmentation of Golgi cisternae, a marked tubule-to-cyst change in the ER, increased accumulation of reticulon-4 (RTN4)/Nogo-B and atlastin-3 (ATL3) at cyst-zone boundaries, cystic separation of the outer and inner nuclear membranes, accompanied by scalloped/lunate distortion of the nucleus, with accumulation of RTN4 on convex sides of distorted nuclei. These cells showed inhibition of vesicular stomatitis virus G protein glycoprotein trafficking, mitochondrial fragmentation, and reduced mitochondrial function. STAT5a/b(-/-) mouse embryo fibroblasts also showed altered ER/Golgi dynamics. RTN4 knockdown using siRNA did not affect development of the cystic phenotype; ATL3 siRNA led to effacement of cyst-zone boundaries. In magnetic-bead cross-immunopanning assays, ATL3 bound both STAT5a and STAT5b. Remarkably, this novel cystic ER/lunate nucleus phenotype was characteristic of vascular cells in arterial lesions of idiopathic pulmonary hypertension, an unrelentingly fatal human disease. These data provide evidence of a STAT-family protein regulating the structure of a cytoplasmic organelle and implicate this mechanism in the pathogenesis of a human disease. PMID

  6. Multifunctional Roles for the Protein Translocation Machinery in RNA Anchoring to the Endoplasmic Reticulum*

    PubMed Central

    Jagannathan, Sujatha; Hsu, Jack C.-C.; Reid, David W.; Chen, Qiang; Thompson, Will J.; Moseley, Arthur M.; Nicchitta, Christopher V.

    2014-01-01

    Signal sequence-encoding mRNAs undergo translation-dependent localization to the endoplasmic reticulum (ER) and at the ER are anchored via translation on Sec61-bound ribosomes. Recent investigations into the composition and membrane association characteristics of ER-associated mRNAs have, however, revealed both ribosome-dependent (indirect) and ribosome-independent (direct) modes of mRNA association with the ER. These findings raise important questions regarding our understanding of how mRNAs are selected, localized, and anchored to the ER. Using semi-intact tissue culture cells, we performed a polysome solubilization screen and identified conditions that distinguish polysomes engaged in the translation of distinct cohorts of mRNAs. To gain insight into the molecular basis of direct mRNA anchoring to the ER, we performed RNA-protein UV photocross-linking studies in rough microsomes and demonstrate that numerous ER integral membrane proteins display RNA binding activity. Quantitative proteomic analyses of HeLa cytosolic and ER-bound polysome fractions identified translocon components as selective polysome-interacting proteins. Notably, the Sec61 complex was highly enriched in polysomes engaged in the translation of endomembrane organelle proteins, whereas translocon accessory proteins, such as ribophorin I, were present in all subpopulations of ER-associated polysomes. Analyses of the protein composition of oligo(dT)-selected UV photocross-linked ER protein-RNA adducts identified Sec61α,β and ribophorin I as ER-poly(A) mRNA-binding proteins, suggesting unexpected roles for the protein translocation and modification machinery in mRNA anchoring to the ER. In summary, we propose that multiple mechanisms of mRNA and ribosome association with ER operate to enable an mRNA transcriptome-wide function for the ER in protein synthesis. PMID:25063809

  7. The geological interpretation of photometric surface roughness

    NASA Technical Reports Server (NTRS)

    Helfenstein, Paul

    1988-01-01

    A computer-generated km-scale relief map, whose topographic facets on scales of less than a few m are assumed to have smooth particulate surfaces, is the basis of the present investigation of the relationship between photometrically-derived values of Hapke's (1984) roughness parameter theta and topographic scale. The addition of m-km scale-range relief to the otherwise smooth surface alters integral photometric behavior in a way that is consistent with Hapke's equation; the roughness characterized by theta is an integral property over all scales up to the resolution limit of the photometric data used in its determination. With sufficient phase angle coverage, theta can distinguish terrains with very different integral roughnesses.

  8. Surface roughness effects on equilibrium temperature.

    NASA Technical Reports Server (NTRS)

    Houchens, A. F.; Hering, R. G.

    1972-01-01

    An analysis is presented for evaluation of equilibrium temperature distribution on radiatively adiabatic, adjoint planes which are uniformly irradiated by a collimated solar flux. The analysis employs a semigrey spectral model. Radiation properties for surface emitted radiation are obtained from the expressions of electromagnetic theory for smooth surfaces. Rough surface properties for solar radiation are given by the Beckmann bidirectional reflectance model. Numerical solutions to the governing equations yield equilibrium temperature distributions for a range of the influencing parameters. Surface roughness has little influence on equilibrium temperature for materials with high values for solar absorptance. However, for low or intermediate values of solar absorptance, roughness effects on the spatial distribution of reflected solar radiation can significantly alter equilibrium temperature particularly at surface elements where radiant interaction is small.

  9. Discrete Roughness Transition for Hypersonic Flight Vehicles

    NASA Technical Reports Server (NTRS)

    Berry, Scott A.; Horvath, Thomas J.

    2007-01-01

    The importance of discrete roughness and the correlations developed to predict the onset of boundary layer transition on hypersonic flight vehicles are discussed. The paper is organized by hypersonic vehicle applications characterized in a general sense by the boundary layer: slender with hypersonic conditions at the edge of the boundary layer, moderately blunt with supersonic, and blunt with subsonic. This paper is intended to be a review of recent discrete roughness transition work completed at NASA Langley Research Center in support of agency flight test programs. First, a review is provided of discrete roughness wind tunnel data and the resulting correlations that were developed. Then, results obtained from flight vehicles, in particular the recently flown Hyper-X and Shuttle missions, are discussed and compared to the ground-based correlations.

  10. Wetting on rough self-affine surfaces

    NASA Astrophysics Data System (ADS)

    Palasantzas, George

    1995-05-01

    In this paper, we present a general investigation of the effective potential for complete wetting on self-affine rough surfaces. The roughness effect is investigated by means of the height-height correlation model in Fourier space ~(1+aξ2q2)-1-H. The parameters H and ξ are, respectively, the roughness exponent and the substrate in-plane correlation length. It is observed that the effect of H on the free interface profile is significant for ξ>ξ) regime is characterized by a power-law scaling ~Y-2.

  11. Abundance of field galaxies

    NASA Astrophysics Data System (ADS)

    Klypin, Anatoly; Karachentsev, Igor; Makarov, Dmitry; Nasonova, Olga

    2015-12-01

    We present new measurements of the abundance of galaxies with a given circular velocity in the Local Volume: a region centred on the Milky Way Galaxy and extending to distance ˜10 Mpc. The sample of ˜750 mostly dwarf galaxies provides a unique opportunity to study the abundance and properties of galaxies down to absolute magnitudes MB ≈ -10 and virial masses M_vir= 109{ M_{⊙}}. We find that the standard Λ cold dark matter (ΛCDM) model gives remarkably accurate estimates for the velocity function of galaxies with circular velocities V ≳ 70 kms-1 and corresponding virial masses M_vir≳ 5× 10^{10}{ M_{⊙}}, but it badly fails by overpredicting ˜5 times the abundance of large dwarfs with velocities V = 30-40 kms-1. The warm dark matter (WDM) models cannot explain the data either, regardless of mass of WDM particle. Just as in previous observational studies, we find a shallow asymptotic slope dN/dlog V ∝ Vα, α ≈ -1 of the velocity function, which is inconsistent with the standard ΛCDM model that predicts the slope α = -3. Though reminiscent to the known overabundance of satellite problem, the overabundance of field galaxies is a much more difficult problem. For the standard ΛCDM model to survive, in the 10 Mpc radius of the Milky Way there should be 1000 not yet detected galaxies with virial mass M_vir≈ 10^{10}{ M_{⊙}}, extremely low surface brightness and no detectable H I gas. So far none of this type of galaxies have been discovered.

  12. ROUGHNESS LENGTHS FOR THE SAVANNAH RIVER SITE

    SciTech Connect

    Hunter, C.

    2012-03-28

    Surface roughness values for the areas surrounding the H, D and N-Area meteorological towers were computed from archived 2010 meteorological data. These 15-minute-averaged data were measured with cup anemometers and bidirectional wind vanes (bivanes) 61 m above the surface. The results of the roughness calculation using the standard deviation of elevation angle {sigma}{sub E}, and applying the simple formula based on tree canopy height, gave consistent estimates for roughness around the H-Area tower in the range of 1.76 to 1.86 m (95% confidence interval) with a mean value of 1.81 m. Application of the {sigma}{sub E} method for the 61-m level at D and N-Areas gave mean values of 1.71 and 1.81 with confidence ranges of 1.62-1.81 and 1.73-1.88 meters, respectively. Roughness results are azimuth dependent, and thus are presented as averages over compass sectors spanning 22.5 degrees. Calculated values were compared to other methods of determining roughness, including the standard deviation of the azimuth direction, {sigma}{sub A}, and standard deviation of the wind speed, {sigma}{sub U}. Additional data was obtained from a sonic anemometer at 61-m on the H-Area tower during a period of a few weeks in 2010. Results from the sonic anemometer support our use of {sigma}{sub E} to calculate roughness. Based on the H-Area tower results, a surface roughness of 1.8 m using is recommended for use in dispersion modeling applications that consider the impacts of a contaminant release to individuals along the Site boundary. The canopy surrounding the H-Area tower is relatively uniform (i.e., little variance in roughness by upwind direction), and data supplied by the U.S. Forest Service at Savannah River show that the canopy height and composition surrounding the H-Area tower is reasonably representative of forested areas throughout the SRS reservation. For dispersion modeling analyses requiring assessments of a co-located worker within the respective operations area, recommended

  13. Laws of Flow in Rough Pipes

    NASA Technical Reports Server (NTRS)

    Nikuradse, J

    1950-01-01

    An experimental investigation is made of the turbulent flow of water in pipes with various degrees of relative roughness. The pipes range in size from 25 to 100 millimeters in diameter and from 1800 to 7050 millimeters in length. Flow velocities permitted Reynolds numbers from about 10 (sup. 4) to 10 (sup. 6). The laws of resistance and velocity distributions were obtained as a function of relative roughness and Reynolds number. Mixing length, as described by Prandtl's mixing-length formula, is discussed in relation to the experimental results.

  14. Rough and Steep Terrain Lunar Surface Mobility

    NASA Technical Reports Server (NTRS)

    Wilcox, Brian

    2005-01-01

    In the summer of 2004, the NASA Exploration Systems Mission Directorate conducted an open call for projects relevant to human and robotic exploration of the Earth-Moon and Mars systems. A project entitled 'Rough and Steep Terrain Lunar Surface Mobility' was submitted by JPL and accepted by NASA. The principal investigator of this project describes the robotic vehicle being developed for this effort, which includes six 'wheels-on-legs' so that it can roll efficiently on relatively smooth terrain but walk (using locked wheels as footpads) when "the going gets rough".

  15. Roughness Perception of Haptically Displayed Fractal Surfaces

    NASA Technical Reports Server (NTRS)

    Costa, Michael A.; Cutkosky, Mark R.; Lau, Sonie (Technical Monitor)

    2000-01-01

    Surface profiles were generated by a fractal algorithm and haptically rendered on a force feedback joystick, Subjects were asked to use the joystick to explore pairs of surfaces and report to the experimenter which of the surfaces they felt was rougher. Surfaces were characterized by their root mean square (RMS) amplitude and their fractal dimension. The most important factor affecting the perceived roughness of the fractal surfaces was the RMS amplitude of the surface. When comparing surfaces of fractal dimension 1.2-1.35 it was found that the fractal dimension was negatively correlated with perceived roughness.

  16. Rough Fresnel zone plates over metallic surfaces.

    PubMed

    Salgado-Remacha, Francisco Javier; Sanchez-Brea, Luis Miguel; Alvarez-Rios, Francisco Javier; Bernabeu, Eusebio

    2010-04-01

    We analyze the focusing properties of Fresnel zone plates fabricated over steel tapes using laser ablation. Our intention is to implement the use of micro-optical elements when the use of conventional chrome-glass elements is not indicated. Because of the manufacture process, the surface presents a certain anisotropic roughness, which reduces the focusing properties. First, we develop numerical simulations by means of the Rayleigh-Sommerfeld approach, showing how roughness in both levels of the Fresnel zone plate affects the focalization of the lens. We also manufacture Fresnel zone plates over steel tape, and perform experimental verification that corroborates the numerical results. PMID:20357856

  17. Evaluation of Dry, Rough Vacuum Pumps

    NASA Technical Reports Server (NTRS)

    Hunter, Brian

    2006-01-01

    This document provides information on the testing and evaluation of thirteen dry rough vacuum pumps of various designs and from various manufacturers. Several types of rough vacuum pumps were evaluated, including scroll, roots, and diaphragm pumps. Tests included long term testing, speed curve generation, voltage variance, vibrations emissions and susceptibility, electromagnetic interference emissions and susceptibility, static leak rate, exhaust restriction, response/recovery time tests, and a contamination analysis for scroll pumps. Parameters were found for operation with helium, which often is not provided from the manufacturer

  18. Surface roughness effects in elastohydrodynamic contacts

    NASA Technical Reports Server (NTRS)

    Tripp, J. H.; Hamrock, B. J.

    1985-01-01

    Surface roughness effects in full-film EHL contacts were studied. A flow factor modification to the Reynolds equation was applied to piezoviscous-elastic line contacts. Results for ensemble-averaged film shape, pressure distribution, and other mechanical quantities were obtained. Asperities elongated in the flow direction by a factor exceeding two decreased both film shape and pressure extrema at constant load; isotropic or transverse asperities increased these extrema. The largest effects are displayed by traction, which increased by over 5% for isotropic or transverse asperities and by slightly less for longitudinal roughness.

  19. Fused silica fine grinding with low roughness

    NASA Astrophysics Data System (ADS)

    Dai, Lei; Gu, Yongqiang; Wu, Di

    2014-08-01

    Lithography-optics is one of the most complex optical systems. The fine grinding process is the most important step before polishing. Roughness and sub-surface damage (SSD) are essential outputs of fine grinding. We demonstrate the method that use fix abrasive cup tool with CNC grinding machine to complete the fine grinding process, even instead of lapping process. And experiment sample roughness can reach 23.40nm rms and Ra 18.554nm. The SSD estimate is about 2 μm which is also smaller than commercial lapping process. The fine grinding output can satisfy the lithography optic fabrication demands and efficiently reduce the polishing time.

  20. Elastoplastic deformation of a roughness element

    NASA Astrophysics Data System (ADS)

    Murashov, M. V.; Kornev, Yu. V.

    2014-03-01

    The problem of using the mechanical properties determined in a macroexperiment in contact models for micron-sized roughness elements is considered. For a sample of commercial-purity AD1 aluminum, the penetration depths of an indenter into a rough surface element that are determined in a physical experiment and in a three-dimensional finite element simulation are compared. It is found that, with allowance for certain assumptions, the application of the properties determined in a macroexperiment requires their correction to take into account the cold work hardening of the surface layer in the sample material and the size effect.

  1. Surface roughness evolution of nanocomposite thin films

    SciTech Connect

    Turkin, A. A.; Pei, Y. T.; Shaha, K. P.; Chen, C. Q.; Vainshtein, D. I.; Hosson, J. Th. M. de

    2009-01-01

    An analysis of dynamic roughening and smoothening mechanisms of thin films grown with pulsed-dc magnetron sputtering is presented. The roughness evolution has been described by a linear stochastic equation, which contains the second- and fourth-order gradient terms. Dynamic smoothening of the growing interface is explained by ballistic effects resulting from impingements of ions to the growing thin film. These ballistic effects are sensitive to the flux and energy of impinging ions. The predictions of the model are compared with experimental data, and it is concluded that the thin film roughness can be further controlled by adjusting waveform, frequency, and width of dc pulses.

  2. Venus surface roughness and Magellan stereo data

    NASA Technical Reports Server (NTRS)

    Maurice, Kelly E.; Leberl, Franz W.; Norikane, L.; Hensley, Scott

    1994-01-01

    Presented are results of some studies to develop tools useful for the analysis of Venus surface shape and its roughness. Actual work was focused on Maxwell Montes. The analyses employ data acquired by means of NASA's Magellan satellite. The work is primarily concerned with deriving measurements of the Venusian surface using Magellan stereo SAR. Roughness was considered by means of a theoretical analyses based on digital elevation models (DEM's), on single Magellan radar images combined with radiometer data, and on the use of multiple overlapping Magellan radar images from cycles 1, 2, and 3, again combined with collateral radiometer data.

  3. The Pathogen-Occupied Vacuoles of Anaplasma phagocytophilum and Anaplasma marginale Interact with the Endoplasmic Reticulum

    PubMed Central

    Truchan, Hilary K.; Cockburn, Chelsea L.; Hebert, Kathryn S.; Magunda, Forgivemore; Noh, Susan M.; Carlyon, Jason A.

    2016-01-01

    The genus Anaplasma consists of tick-transmitted obligate intracellular bacteria that invade white or red blood cells to cause debilitating and potentially fatal infections. A. phagocytophilum, a human and veterinary pathogen, infects neutrophils to cause granulocytic anaplasmosis. A. marginale invades bovine erythrocytes. Evidence suggests that both species may also infect endothelial cells in vivo. In mammalian and arthropod host cells, A. phagocytophilum and A. marginale reside in host cell derived pathogen-occupied vacuoles (POVs). While it was recently demonstrated that the A. phagocytophilum-occupied vacuole (ApV) intercepts membrane traffic from the trans-Golgi network, it is unclear if it or the A. marginale-occupied vacuole (AmV) interacts with other secretory organelles. Here, we demonstrate that the ApV and AmV extensively interact with the host endoplasmic reticulum (ER) in endothelial, myeloid, and/or tick cells. ER lumen markers, calreticulin, and protein disulfide isomerase, and the ER membrane marker, derlin-1, were pronouncedly recruited to the peripheries of both POVs. ApV association with the ER initiated early and continued throughout the infection cycle. Both the ApV and AmV interacted with the rough ER and smooth ER. However, only derlin-1-positive rough ER derived vesicles were delivered into the ApV lumen where they localized with intravacuolar bacteria. Transmission electron microscopy identified multiple ER-POV membrane contact sites on the cytosolic faces of both species' vacuoles that corresponded to areas on the vacuoles' lumenal faces where intravacuolar Anaplasma organisms closely associated. A. phagocytophilum is known to hijack Rab10, a GTPase that regulates ER dynamics and morphology. Yet, ApV-ER interactions were unhindered in cells in which Rab10 had been knocked down, demonstrating that the GTPase is dispensable for the bacterium to parasitize the ER. These data establish the ApV and AmV as pathogen-host interfaces that directly

  4. The Pathogen-Occupied Vacuoles of Anaplasma phagocytophilum and Anaplasma marginale Interact with the Endoplasmic Reticulum.

    PubMed

    Truchan, Hilary K; Cockburn, Chelsea L; Hebert, Kathryn S; Magunda, Forgivemore; Noh, Susan M; Carlyon, Jason A

    2016-01-01

    The genus Anaplasma consists of tick-transmitted obligate intracellular bacteria that invade white or red blood cells to cause debilitating and potentially fatal infections. A. phagocytophilum, a human and veterinary pathogen, infects neutrophils to cause granulocytic anaplasmosis. A. marginale invades bovine erythrocytes. Evidence suggests that both species may also infect endothelial cells in vivo. In mammalian and arthropod host cells, A. phagocytophilum and A. marginale reside in host cell derived pathogen-occupied vacuoles (POVs). While it was recently demonstrated that the A. phagocytophilum-occupied vacuole (ApV) intercepts membrane traffic from the trans-Golgi network, it is unclear if it or the A. marginale-occupied vacuole (AmV) interacts with other secretory organelles. Here, we demonstrate that the ApV and AmV extensively interact with the host endoplasmic reticulum (ER) in endothelial, myeloid, and/or tick cells. ER lumen markers, calreticulin, and protein disulfide isomerase, and the ER membrane marker, derlin-1, were pronouncedly recruited to the peripheries of both POVs. ApV association with the ER initiated early and continued throughout the infection cycle. Both the ApV and AmV interacted with the rough ER and smooth ER. However, only derlin-1-positive rough ER derived vesicles were delivered into the ApV lumen where they localized with intravacuolar bacteria. Transmission electron microscopy identified multiple ER-POV membrane contact sites on the cytosolic faces of both species' vacuoles that corresponded to areas on the vacuoles' lumenal faces where intravacuolar Anaplasma organisms closely associated. A. phagocytophilum is known to hijack Rab10, a GTPase that regulates ER dynamics and morphology. Yet, ApV-ER interactions were unhindered in cells in which Rab10 had been knocked down, demonstrating that the GTPase is dispensable for the bacterium to parasitize the ER. These data establish the ApV and AmV as pathogen-host interfaces that directly

  5. Late embryogenesis abundant proteins

    PubMed Central

    Olvera-Carrillo, Yadira; Reyes, José Luis

    2011-01-01

    Late Embryogenesis Abundant (LEA) proteins accumulate at the onset of seed desiccation and in response to water deficit in vegetative plant tissues. The typical LEA proteins are highly hydrophilic and intrinsically unstructured. They have been classified in different families, each one showing distinctive conserved motifs. In this manuscript we present and discuss some of the recent findings regarding their role in plant adaptation to water deficit, as well as those concerning to their possible function, and how it can be related to their intrinsic structural flexibility. PMID:21447997

  6. Flare Plasma Iron Abundance

    NASA Technical Reports Server (NTRS)

    Dennis, Brian R.; Dan, Chau; Jain, Rajmal; Schwartz, Richard A.; Tolbert, Anne K.

    2008-01-01

    The equivalent width of the iron-line complex at 6.7 keV seen in flare X-ray spectra suggests that the iron abundance of the hottest plasma at temperatures >approx.10 MK may sometimes be significantly lower than the nominal coronal abundance of four times the photospheric value that is commonly assumed. This conclusion is based on X-ray spectral observations of several flares seen in common with the Ramaty High Energy Solar Spectroscopic Imager (RHESSI) and the Solar X-ray Spectrometer (SOXS) on the second Indian geostationary satellite, GSAT-2. The implications of this will be discussed as it relates to the origin of the hot flare plasma - either plasma already in the corona that is directly heated during the flare energy release process or chromospheric plasma that is heated by flare-accelerated particles and driven up into the corona. Other possible explanations of lower-than-expected equivalent widths of the iron-line complex will also be discussed.

  7. Surface roughness scattering in multisubband accumulation layers

    NASA Astrophysics Data System (ADS)

    Fu, Han; Reich, K. V.; Shklovskii, B. I.

    2016-06-01

    Accumulation layers with very large concentrations of electrons where many subbands are filled became recently available due to ionic liquid and other new methods of gating. The low-temperature mobility in such layers is limited by the surface roughness scattering. However, theories of roughness scattering so far dealt only with the small-density single subband two-dimensional electron gas (2DEG). Here we develop a theory of roughness-scattering limited mobility for the multisubband large concentration case. We show that with growing 2D electron concentration n the surface dimensionless conductivity σ /(2 e2/h ) first decreases as ∝n-6 /5 and then saturates as ˜(d aB/Δ2)≫1 , where d and Δ are the characteristic length and height of the surface roughness and aB is the effective Bohr radius. This means that in spite of the shrinkage of the 2DEG thickness and the related increase of the scattering rate the 2DEG remains a good metal.

  8. Surface roughness modulations by submesoscale currents

    NASA Astrophysics Data System (ADS)

    Rascle, Nicolas; Chapron, Bertrand; Nouguier, Frederic; Ponte, Aurelien; Mouche, Alexis; Molemaker, Jeroen

    2016-04-01

    At times, high resolution images of sea surface roughness can provide stunning details of submesoscale upper ocean dynamics. As interpreted, transformations of short scale wind waves by horizontal current gradients are responsible for those spectacular observations. Here we present two major advances towards the quantitative interpretation of those observations. First, we show that surface roughness variations mainly trace two particular characteristics of the current gradient tensor, the divergence and the strain in the wind direction. Local vorticity and shear in the wind direction should not affect short scale roughness distribution and would not be detectable. Second, we discuss the effect of the viewing direction using sets of quasi-simultaneous sun glitter images, taken from different satellites to provide different viewing configurations. We show that upwind and crosswind viewing observations can be markedly different. As further confirmed with idealized numerical simulations, this anisotropy well traces surface current strain area, while more isotropic contrasts likely trace areas dominated by surface divergence conditions. These findings suggest the potential to directly observe surface currents at submesoscale by using surface roughness observations at multiple azimuth viewing angles. They also pave the way towards a better understanding of the coupling between ocean, waves and atmosphere at high resolution.

  9. Thermal smoothing of rough surfaces in vacuo

    NASA Technical Reports Server (NTRS)

    Wahl, G.

    1986-01-01

    The derivation of equations governing the smoothing of rough surfaces, based on Mullins' (1957, 1960, and 1963) theories of thermal grooving and of capillarity-governed solid surface morphology is presented. As an example, the smoothing of a one-dimensional sine-shaped surface is discussed.

  10. Particle Sliding on a Rough Incline

    ERIC Educational Resources Information Center

    Zurcher, Ulrich

    2007-01-01

    We study a particle sliding on a rough inclined plane as an example of a mechanical problem with nonholonomic constraint. The particle is launched in an arbitrary direction so that its motion has both a horizontal and a "vertical" (i.e., up- and downhill) direction. The friction force acts along the instantaneous velocity, so that the horizontal…

  11. Three-tier rough superhydrophobic surfaces.

    PubMed

    Cao, Yuanzhi; Yuan, Longyan; Hu, Bin; Zhou, Jun

    2015-08-01

    A three-tier rough superhydrophobic surface was fabricated by growing hydrophobic modified (fluorinated silane) zinc oxide (ZnO)/copper oxide (CuO) hetero-hierarchical structures on silicon (Si) micro-pillar arrays. Compared with the other three control samples with a less rough tier, the three-tier surface exhibits the best water repellency with the largest contact angle 161° and the lowest sliding angle 0.5°. It also shows a robust Cassie state which enables the water to flow with a speed over 2 m s(-1). In addition, it could prevent itself from being wetted by the droplet with low surface tension (mixed water and ethanol 1:1 in volume) which reveals a flow speed of 0.6 m s(-1) (dropped from the height of 2 cm). All these features prove that adding another rough tier on a two-tier rough surface could futher improve its water-repellent properties. PMID:26184512

  12. Measurement and Correlation of Ice Accretion Roughness

    NASA Technical Reports Server (NTRS)

    Anderson, David N.; Hentschel, Daniel B.; Ruff, Gary A.

    2003-01-01

    Measurements were taken of the roughness characteristics of ice accreted on NACA 0012 airfoils in the NASA Glenn Icing Research Tunnel (IRT). Tests were conducted with size scaled, using models with chords of 26.7, 53.3, and 80.0 cm, and with liquid-water content scaled, both according to previously-tested scaling methods. The width of the smooth zone which forms on either side of the leading edge of the airfoil and the diameter of the roughness elements are presented in non-dimensional form as functions of the accumulation parameter. The smooth-zone width was found to decrease with increasing accumulation parameter. The roughness-element diameter increased with accumulation parameter until a plateau was reached. This maximum diameter was about 0.06 times twice the model leading-edge radius. Neither smooth-zone width nor element diameter were affected by a change in freezing fraction from 0.2 to 0.4. Both roughness characteristics appeared to scale with model size and with liquid-water content.

  13. Pharmacological Modulators of Endoplasmic Reticulum Stress in Metabolic Diseases

    PubMed Central

    Jung, Tae Woo; Choi, Kyung Mook

    2016-01-01

    The endoplasmic reticulum (ER) is the principal organelle responsible for correct protein folding, a step in protein synthesis that is critical for the functional conformation of proteins. ER stress is a primary feature of secretory cells and is involved in the pathogenesis of numerous human diseases, such as certain neurodegenerative and cardiometabolic disorders. The unfolded protein response (UPR) is a defense mechanism to attenuate ER stress and maintain the homeostasis of the organism. Two major degradation systems, including the proteasome and autophagy, are involved in this defense system. If ER stress overwhelms the capacity of the cell’s defense mechanisms, apoptotic death may result. This review is focused on the various pharmacological modulators that can protect cells from damage induced by ER stress. The possible mechanisms for cytoprotection are also discussed. PMID:26840310

  14. Endoplasmic Reticulum Stress Sensing in the Unfolded Protein Response

    PubMed Central

    Gardner, Brooke M.; Pincus, David; Gotthardt, Katja; Gallagher, Ciara M.; Walter, Peter

    2013-01-01

    Secretory and transmembrane proteins enter the endoplasmic reticulum (ER) as unfolded proteins and exit as either folded proteins in transit to their target organelles or as misfolded proteins targeted for degradation. The unfolded protein response (UPR) maintains the protein-folding homeostasis within the ER, ensuring that the protein-folding capacity of the ER meets the load of client proteins. Activation of the UPR depends on three ER stress sensor proteins, Ire1, PERK, and ATF6. Although the consequences of activation are well understood, how these sensors detect ER stress remains unclear. Recent evidence suggests that yeast Ire1 directly binds to unfolded proteins, which induces its oligomerization and activation. BiP dissociation from Ire1 regulates this oligomeric equilibrium, ultimately modulating Ire1’s sensitivity and duration of activation. The mechanistic principles of ER stress sensing are the focus of this review. PMID:23388626

  15. Endoplasmic reticulum aminopeptidases in the pathogenesis of ankylosing spondylitis.

    PubMed

    Kenna, Tony J; Robinson, Philip C; Haroon, Nigil

    2015-09-01

    There has been significant progress in our understanding of the pathogenesis of AS. The advent of genome-wide association studies has increased the known loci associated with AS to more than 40. The endoplasmic reticulum resident aminopeptidases (ERAP) 1 and 2 were identified in this manner and are of particular interest. There appears to be a genetic as well as a functional interaction of ERAP1 and 2 with HLA-B27 based on the known functions of these molecules. Recent studies on the structure, immunological effects and the peptide-trimming properties of ERAP 1 and 2 have helped to provide insight into their pathogenic potential in AS. In this review, we explore the role of ERAP 1 and 2 in the pathogenesis of AS. PMID:26070942

  16. Stress Responses from the Endoplasmic Reticulum in Cancer

    PubMed Central

    Kato, Hironori; Nishitoh, Hideki

    2015-01-01

    The endoplasmic reticulum (ER) is a dynamic organelle that is essential for multiple cellular functions. During cellular stress conditions, including nutrient deprivation and dysregulation of protein synthesis, unfolded/misfolded proteins accumulate in the ER lumen, resulting in activation of the unfolded protein response (UPR). The UPR also contributes to the regulation of various intracellular signaling pathways such as calcium signaling and lipid signaling. More recently, the mitochondria-associated ER membrane (MAM), which is a site of close contact between the ER and mitochondria, has been shown to function as a platform for various intracellular stress responses including apoptotic signaling, inflammatory signaling, the autophagic response, and the UPR. Interestingly, in cancer, these signaling pathways from the ER are often dysregulated, contributing to cancer cell metabolism. Thus, the signaling pathway from the ER may be a novel therapeutic target for various cancers. In this review, we discuss recent research on the roles of stress responses from the ER, including the MAM. PMID:25941664

  17. Cytoprotective small molecule modulators of endoplasmic reticulum stress.

    PubMed

    Munshi, Soumyabrata; Dahl, Russell

    2016-06-01

    Cellular health depends on the normal function of the endoplasmic reticulum (ER) to fold, assemble, and modify critical proteins to maintain viability. When the ER cannot process proteins effectively, a condition known as ER stress ensues. When this stress is excessive or prolonged, cell death via apoptotic pathways is triggered. Interestingly, most major diseases have been shown to be intimately linked to ER stress, including diabetes, stroke, neurodegeneration, and many cancers. Thus, controlling ER stress presents a significant strategy for drug development for these diseases. The goal of this review is to present various small molecules that alleviate ER stress with the intention that they may serve as useful starting points for therapeutic agent development. PMID:27091069

  18. Endoplasmic reticulum stress in myotonic dystrophy type 1 muscle.

    PubMed

    Ikezoe, Koji; Nakamori, Masayuki; Furuya, Hirokazu; Arahata, Hajime; Kanemoto, Soshi; Kimura, Takashi; Imaizumi, Kazunori; Takahashi, Masanori P; Sakoda, Saburo; Fujii, Naoki; Kira, Jun-ichi

    2007-11-01

    In myotonic dystrophy type 1 (DM1), alternative splicing of ryanodine receptor 1 (RyR1) and sarcoplasmic/endoplasmic reticulum Ca2+ ATPase (SERCA) genes has been reported. These proteins are essential for maintaining intracellular Ca2+ in skeletal muscle. To clarify involvement of endoplasmic reticulum (ER) stress in DM1 muscles, we examined the activation of ER stress-related proteins by immunohistochemistry, western blot analysis and RT-PCR. In four of five DM1 muscle biopsies, except for a muscle biopsy from a patient with the shortest CTG expansion and no myotonia, increased expression of GRP78 and calnexin, and phosphorylation of PERK and eIF-2 alpha were revealed in fibers with sarcoplasmic masses and in highly atrophic fibers with pyknotic nuclear clumps. Caspase-3 and -7 were also expressed in these fibers. Increased expression of GRP78 in these DM1 muscles was confirmed by western blot analysis. GRP78 mRNA and spliced isoform of XBP1 mRNA were also increased in DM1 muscle biopsies. Furthermore, we demonstrated increased expression of GRP78 in highly atrophic fibers with pyknotic nuclear clumps in all three muscle biopsies from neurogenic muscular atrophies. However, five muscle biopsies from central core disease presumably with disturbed intracellular Ca2+ homeostasis and a muscle biopsy from paramyotonia congenita with myotonia showed no activation of these proteins. Taken together, ER stress is involved in muscle wasting in DM1. However, it seems to be evoked not only by disrupted intracellular Ca2+ homeostasis. PMID:17661063

  19. Maternal obesity alters endoplasmic reticulum homeostasis in offspring pancreas.

    PubMed

    Soeda, Jumpei; Mouralidarane, Angelina; Cordero, Paul; Li, Jiawei; Nguyen, Vi; Carter, Rebeca; Kapur, Sabrina R; Pombo, Joaquim; Poston, Lucilla; Taylor, Paul D; Vinciguerra, Manlio; Oben, Jude A

    2016-06-01

    The prevalence of non-alcoholic fatty pancreas disease (NAFPD) is increasing in parallel with obesity rates. Stress-related alterations in endoplasmic reticulum (ER), such as the unfolded protein response (UPR), are associated with obesity. The aim of this study was to investigate ER imbalance in the pancreas of a mice model of adult and perinatal diet-induced obesity. Twenty female C57BL/6J mice were assigned to control (Con) or obesogenic (Ob) diets prior to and during pregnancy and lactation. Their offspring were weaned onto Con or Ob diets up to 6 months post-partum. Then, after sacrifice, plasma biochemical analyses, gene expression, and protein concentrations were measured in pancreata. Offspring of Ob-fed mice had significantly increased body weight (p < 0.001) and plasma leptin (p < 0.001) and decreased insulin (p < 0.01) levels. Maternal obesogenic diet decreased the total and phosphorylated Eif2α and increased spliced X-box binding protein 1 (XBP1). Pancreatic gene expression of downstream regulators of UPR (EDEM, homocysteine-responsive endoplasmic reticulum-resident (HERP), activating transcription factor 4 (ATF4), and C/EBP homologous protein (CHOP)) and autophagy-related proteins (LC3BI/LC3BII) were differently disrupted by obesogenic feeding in both mothers and offspring (from p < 0.1 to p < 0.001). Maternal obesity and Ob feeding in their offspring alter UPR in NAFPD, with involvement of proapoptotic and autophagy-related markers. Upstream and downstream regulators of PERK, IRE1α, and ATF6 pathways were affected differently following the obesogenic insults. PMID:26979740

  20. 14 CFR 25.1517 - Rough air speed, VRA.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 14 Aeronautics and Space 1 2012-01-01 2012-01-01 false Rough air speed, VRA. 25.1517 Section 25... Limitations § 25.1517 Rough air speed, VRA. A rough air speed, VRA, for use as the recommended turbulence... rough air encounters will not cause the overspeed warning to operate too frequently. In the absence of...

  1. 14 CFR 25.1517 - Rough air speed, VRA.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 14 Aeronautics and Space 1 2014-01-01 2014-01-01 false Rough air speed, VRA. 25.1517 Section 25... Limitations § 25.1517 Rough air speed, VRA. A rough air speed, VRA, for use as the recommended turbulence... rough air encounters will not cause the overspeed warning to operate too frequently. In the absence of...

  2. 7 CFR 51.707 - Slightly rough texture.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... Other Than Florida, California, and Arizona) Definitions § 51.707 Slightly rough texture. Slightly rough texture means that the skin is not smooth or fairly smooth but is not excessively rough or excessively... 7 Agriculture 2 2013-01-01 2013-01-01 false Slightly rough texture. 51.707 Section...

  3. 7 CFR 51.707 - Slightly rough texture.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... Other Than Florida, California, and Arizona) Definitions § 51.707 Slightly rough texture. Slightly rough texture means that the skin is not smooth or fairly smooth but is not excessively rough or excessively... 7 Agriculture 2 2014-01-01 2014-01-01 false Slightly rough texture. 51.707 Section...

  4. 7 CFR 51.645 - Slightly rough texture.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ..., and Arizona) Definitions § 51.645 Slightly rough texture. Slightly rough texture means that the skin is not smooth or fairly smooth but is not excessively rough or excessively thick, or materially... 7 Agriculture 2 2010-01-01 2010-01-01 false Slightly rough texture. 51.645 Section...

  5. 7 CFR 51.707 - Slightly rough texture.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ..., and Arizona) Definitions § 51.707 Slightly rough texture. Slightly rough texture means that the skin is not smooth or fairly smooth but is not excessively rough or excessively thick, or materially... 7 Agriculture 2 2010-01-01 2010-01-01 false Slightly rough texture. 51.707 Section...

  6. 7 CFR 51.707 - Slightly rough texture.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ..., and Arizona) Definitions § 51.707 Slightly rough texture. Slightly rough texture means that the skin is not smooth or fairly smooth but is not excessively rough or excessively thick, or materially... 7 Agriculture 2 2011-01-01 2011-01-01 false Slightly rough texture. 51.707 Section...

  7. 7 CFR 51.645 - Slightly rough texture.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ..., and Arizona) Definitions § 51.645 Slightly rough texture. Slightly rough texture means that the skin is not smooth or fairly smooth but is not excessively rough or excessively thick, or materially... 7 Agriculture 2 2011-01-01 2011-01-01 false Slightly rough texture. 51.645 Section...

  8. 7 CFR 51.645 - Slightly rough texture.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... Other Than Florida, California, and Arizona) Definitions § 51.645 Slightly rough texture. Slightly rough texture means that the skin is not smooth or fairly smooth but is not excessively rough or excessively... 7 Agriculture 2 2014-01-01 2014-01-01 false Slightly rough texture. 51.645 Section...

  9. 7 CFR 51.645 - Slightly rough texture.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... Other Than Florida, California, and Arizona) Definitions § 51.645 Slightly rough texture. Slightly rough texture means that the skin is not smooth or fairly smooth but is not excessively rough or excessively... 7 Agriculture 2 2013-01-01 2013-01-01 false Slightly rough texture. 51.645 Section...

  10. 7 CFR 51.645 - Slightly rough texture.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ..., and Arizona) Definitions § 51.645 Slightly rough texture. Slightly rough texture means that the skin is not smooth or fairly smooth but is not excessively rough or excessively thick, or materially... 7 Agriculture 2 2012-01-01 2012-01-01 false Slightly rough texture. 51.645 Section...

  11. 7 CFR 51.707 - Slightly rough texture.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ..., and Arizona) Definitions § 51.707 Slightly rough texture. Slightly rough texture means that the skin is not smooth or fairly smooth but is not excessively rough or excessively thick, or materially... 7 Agriculture 2 2012-01-01 2012-01-01 false Slightly rough texture. 51.707 Section...

  12. Experimental Investigation of the Problem of Surface Roughness

    NASA Technical Reports Server (NTRS)

    Schlichting, H

    1937-01-01

    Based on the universal laws of turbulent velocity distribution at rough and smooth walls, there is in the present work presented a method that allows surface roughness tests and in particular, measurements on the roughness of ship surfaces to be carried out in a much simpler manner. The types of roughness investigated were in the form of flat, rough plates installed in a square-section rectangular channel, the other three walls always being smooth. Twenty-one plates of various roughness were investigated, the roughness elements being the following: spheres of diameter 0.41 and 0.21, respectively, spherical segments, cones, and "short" and "long" angles.

  13. Oxygen abundance and convection

    NASA Astrophysics Data System (ADS)

    Van't Veer, C.; Cayrel, R.

    The triplet IR lines of O I near 777 nm are computed with the Kurucz's code, modified to accept several convection models. The program has been run with the MLT algorithm, with l/H = 1.25 and 0.5, and with the Canuto-Mazzitelli and Canuto-Goldman-Mazzitelli approaches, on a metal-poor turnoff-star model atmosphere with Teff=6200 K, log g = 4.3, [Fe/H]= -1.5. The results show that the differences in equivalent widths for the 4 cases do not exceed 2 per cent (0.3 mA). The convection treatment is therefore not an issue for the oxygen abundance derived from the permitted lines.

  14. Rough-wall turbulent boundary layers in the transition regime

    NASA Technical Reports Server (NTRS)

    Bandyopadhyay, Promode R.

    1987-01-01

    An experimental investigation of turbulent boundary layers over two-dimensional spanwise groove and three-dimensional sandgrain roughnesses in the transition regime between hydraulically smooth and fully rough conditions is presented. It is found that a self-preserving state can be reached in boundary layers developing over both d-type groove and sandgrain roughnesses, and that the drag of a k-type rough wall can be reduced by lowering the spanwise aspect ratio of the roughness elements. The two roughness Reynolds numbers defining the boundaries of the transition regime of the k-type roughnesses are shown to decrease with increasing roughness-element spanwise aspect ratio, and the upper critical transition Reynolds number is shown to determine the roughness behavior in both the transition and fully rough regime.

  15. Hepatic glycogen synthesis in the fetal mouse: An ultrastructural, morphometric, and autoradiographic investigation of the relationship between the smooth endoplasmic reticulum and glycogen

    SciTech Connect

    Breslin, J.S.

    1989-01-01

    Fetal rodent hepatocytes undergo a rapid and significant accumulation of glycogen prior to birth. The distinct association of the smooth endoplasmic reticulum (SER) with glycogen during glycogen synthesis documented in the adult hepatocyte has not been clearly demonstrated in the fetus. The experiments described in this dissertation tested the hypothesis that SER is present and functions in the synthesis of fetal hepatic glycogen. Biochemical analysis, light microscopic (LM) histochemistry and electron microscope (EM) morphometry demonstrated that fetal hepatic glycogen synthesis began on day 15, with maximum accumulation occurring between days 17-19. Glycogen accumulation began in a small population of cells. Both the number of cells containing glycogen and the quantity of glycogen per cell increased as glycogen accumulated. Smooth endoplasmic reticulum (SER) was observed on day 14 of gestation and throughout fetal hepatic glycogen synthesis, primarily as dilated ribosome-free terminal extensions of rough endoplasmic reticulum (RER), frequently associated with glycogen. SER was in close proximity to isolated particles of glycogen and at the periphery of large compact glycogen deposits. Morphometry demonstrated that the membrane surface of SER in the average fetal hepatocyte increased as glycogen accumulated through day 18 and dropped significantly as glycogen levels peaked on day 19. Parallel alterations in RER membrane surface, indicated overall increases in ER membrane surface. Autoradiography following administration of {sup 3}H-galactose demonstrated that newly synthesized glycogen was deposited near profiles of SER at day 16 and at day 18; however, at day 18 the majority of label was uniformly distributed over glycogen remote from profiles of SER.

  16. Physically-based Ice Thickness and Surface Roughness Retrievals over Rough Deformed Sea Ice

    NASA Astrophysics Data System (ADS)

    Li, Li; Gaiser, Peter; Allard, Richard; Posey, Pamela; Hebert, David; Richter-Menge, Jacqueline; Polashenski, Christopher; Claffey, Keran

    2016-04-01

    The observations of sea ice thickness and ice surface roughness are critical for our understanding of the state of the changing Arctic. Currently, the Radar and/or LiDAR data of sea ice freeboard are used to infer sea ice thickness via isostasy. The underlying assumption is that the LiDAR signal returns at the air/snow interface and radar signal at the snow/ice interface. The elevations of these interfaces are determined based on LiDAR/Radar return waveforms. However, the commonly used threshold-based surface detection techniques are empirical in nature and work well only over level/smooth sea ice. Rough sea ice surfaces can modify the return waveforms, resulting in significant Electromagnetic (EM) bias in the estimated surface elevations, and thus large errors in the ice thickness retrievals. To understand and quantify such sea ice surface roughness effects, a combined EM rough surface and volume scattering model was developed to simulate radar returns from the rough sea ice 'layer cake' structure. A waveform matching technique was also developed to fit observed waveforms to a physically-based waveform model and subsequently correct the roughness induced EM bias in the estimated freeboard. This new EM Bias Corrected (EMBC) algorithm was able to better retrieve surface elevations and estimate the surface roughness parameter simultaneously. Both the ice thickness and surface roughness retrievals are validated using in-situ data. For the surface roughness retrievals, we applied this EMBC algorithm to co-incident LiDAR/Radar measurements collected during a Cryosat-2 under-flight by the NASA IceBridge missions. Results show that not only does the waveform model fit very well to the measured radar waveform, but also the roughness parameters derived independently from the LiDAR and radar data agree very well for both level and deformed sea ice. For sea ice thickness retrievals, validation based on in-situ data from the coordinated CRREL/NRL field campaign demonstrates

  17. Spectral characteristics of sign-alternating self-oscillatory endoplasm mobility in a myxomycete plasmodium

    NASA Astrophysics Data System (ADS)

    Avsievich, T. I.; Frolov, S. V.; Proskurin, S. G.

    2016-01-01

    The results of a short time Fourier transform of the time dependences of the self-oscillatory endoplasm velocity in an isolated strand of the Physarum polycephalum plasmodium recorded using a sign-sensitive laser Doppler microscope are described. Unlike the mode recording an absolute velocity, a sign-sensitive mode makes it possible to detect the pairs of equidistant harmonic components in the time dependence spectra of endoplasm movement. The resulting frequency and amplitude values are used to construct a model adequately describing the alternating endoplasm mobility.

  18. Combinatorial Block Copolymer Ordering on Tunable Rough

    SciTech Connect

    Kulkarni M. M.; Yager K.; Sharma, A.; Karim, A.

    2012-05-01

    Morphology control of block copolymer (BCP) thin films through substrate interaction via controlled roughness parameters is of significant interest for numerous high-tech applications ranging from solar cells to high-density storage media. While effects of substrate surface energy (SE) and roughness (R) on BCP morphology have been individually investigated, their synergistic effects have not been explored in any systematic manner. Interestingly, orientation response of BCP to changes in SE can be similar to what can be accomplished with variations in R. Here we present a novel approach for orienting lamellar BCP films of poly(styrene)-block-poly(methyl methacrylate) (PS-PMMA) on spin-coated xerogel (a dried gel of silica nanoparticle network) substrate with simultaneously tunable surface energy, {gamma}{sub s} {approx} 29-53 mJ/m{sup 2}, by UVO exposure and roughness, R{sub rms} {approx} 0.5-30 nm, by sol-gel processing steps of regulating the catalyst concentration and sol aging time. As in previous BCP orientation studies on 20 nm diameter monodisperse silica nanoparticle coated surface, we find a similar but broadened oscillatory BCP orientation behavior with film thickness due to the random rather than periodic rough surfaces. We also find that higher random roughness amplitude is not the necessary criteria for obtaining a vertical orientation of BCP lamellae. Rather, a high surface fractal dimension (D{sub f} > 2.4) of the rough substrate in conjunction with an optimal substrate surface energy {gamma}{sub s} 29 mJ/m{sup 2} results in 100% vertically oriented lamellar microdomains. The AFM measured film surface microstructure correlates well with the internal 3D BCP film structure probed by grazing incidence small-angle X-ray scattering (GISAXS) and rotational small-angle neutron scattering (SANS). In contrast to tunable self-assembled monolayer (SAM)-coated substrates, the xerogel films are very durable and retain their chemical properties over period of

  19. Actinide abundances in ordinary chondrites

    NASA Technical Reports Server (NTRS)

    Hagee, B.; Bernatowicz, T. J.; Podosek, F. A.; Johnson, M. L.; Burnett, D. S.

    1990-01-01

    Measurements of actinide and light REE (LREE) abundances and of phosphate abundances in equilibrated ordinary chondrites were obtained and were used to define the Pu abundance in the solar system and to determine the degree of variation of actinide and LREE abundances. The results were also used to compare directly the Pu/U ratio with the earlier obtained ratio determined indirectly, as (Pu/Nd)x(Nd/U), assuming that Pu behaves chemically as a LREE. The data, combined with high-accuracy isotope-dilution data from the literature, show that the degree of gram-scale variability of the Th, U, and LREE abundances for equilibrated ordinary chondrites is a factor of 2-3 for absolute abundances and up to 50 percent for relative abundances. The observed variations are interpreted as reflecting the differences in the compositions and/or proportions of solar nebula components accreted to ordinary chondrite parent bodies.

  20. VLT spectroscopy of low-metallicity emission-line galaxies: abundance patterns and abundance discrepancies

    NASA Astrophysics Data System (ADS)

    Guseva, N. G.; Izotov, Y. I.; Stasińska, G.; Fricke, K. J.; Henkel, C.; Papaderos, P.

    2011-05-01

    Context. We present deep spectroscopy of a large sample of low-metallicity emission-line galaxies. Aims: The main goal of this study is to derive element abundances in these low-metallicity galaxies. Methods: We analyze 121 VLT spectra of H ii regions in 46 low-metallicity emission-line galaxies. Of these spectra 83 are archival VLT/FORS1+UVES spectra of H ii regions in 31 low-metallicity emission-line galaxies that are studied for the first time with standard direct methods to determine the electron temperatures, the electron number densities, and the chemical abundances. Results: The oxygen abundance of the sample lies in the range 12 + log O/H = 7.2-8.4. We confirm previous findings that Ne/O increases with increasing oxygen abundance, likely because of a higher depletion of oxygen in higher-metallicity galaxies. The Fe/O ratio decreases from roughly solar at the lowest metallicities to about one tenth of solar, indicating that the degree of depletion of iron into dust grains depends on metallicity. The N/O ratio in extremely low-metallicity galaxies with 12 + log O/H < 7.5 shows a slight increase with decreasing oxygen abundance, which could be the signature of enhanced production of primary nitrogen by rapidly rotating stars at low metallicity. We present the first empirical relation between the electron temperature derived from [S iii]λ6312/λ9069 or [N ii]λ5755/λ6583 and the one derived from [O iii]λ4363/λ(4959+5007) in low-metallicity galaxies. We also present an empirical relation between te derived from [O ii]λ3727/(λ7320 + λ7330) or [S ii]λ4068/(λ6717 + λ6730) and [O iii]λ4363/λ(4959+5007). The electron number densities Ne(Cl iii) and Ne(Ar iv) were derived in a number of objects and are found to be higher than Ne(O ii) and Ne(S ii). This has potential implications for the derivation of the pregalactic helium abundance. In a number of objects, the abundances of C++ and O++ could be derived from recombination lines. Our study confirms the

  1. Variability in roughness measurements for vegetated rivers near base flow, in England and Scotland

    NASA Astrophysics Data System (ADS)

    O'Hare, Matthew T.; McGahey, Caroline; Bissett, Nicola; Cailes, Claire; Henville, Paul; Scarlett, Peter

    2010-05-01

    SummaryThe aim of this study was to reduce uncertainty in roughness information for in-stream vegetation. This in turn reduces the uncertainty in estimating water levels in channels where aquatic vegetation is present. Roughness plays an essential role in water level estimation as it reduces the discharge capacity through energy expenditure on boundary generated turbulence as well as through physical blockages by vegetation. Apart from the hydrology analysis for determining the inflow to the river system, the largest source of uncertainty for estimating water levels in channels is roughness ( Latapie, 2003; Mc Gahey, 2006). Of the different roughness types, vegetation roughness includes the greatest natural variability (e.g. Defra/EA, 2003a; Sellin and Van Beesten, 2004). The hypothesis that measures of plant growth can explain variation in roughness for vegetated channels was tested. Presented here is a snapshot of roughness measures made in vegetated channels at the height of the growing season. One source of variability in roughness values was quantified which is the regional difference in roughness values attributable to differences in aquatic plant growth. This work focused on sites dominated by either submerged Ranunculus spp. (water crowfoot) or the emergent Sparganium erectum (branched bur-reed). These two taxa are among the most common higher aquatic plants in UK rivers. Rivers were sampled from the Scottish border in the north to the south coast of England. Sites (36) were chosen carefully to provide a very wide range of growing conditions. Both roughness, as Manning's n, and plant growth varied substantially between sites. At S. erectum sites mean Manning's n was 0.125 ± 0.04 standard error (s.e.) and at Ranunculus spp. sites mean Manning's n was 0.124 ± 0.017 s.e. For all sites it was possible to reduce uncertainty by attributing variability in Manning's n to standing crop. A plant index, combining three measures of abundance, explained 70% of the

  2. Capella: Structure and Abundances

    NASA Technical Reports Server (NTRS)

    Brickhouse, Nancy S.

    1999-01-01

    This grant covers the analysis of EUVE spectra of the cool star binary system Capella. This project has also required the analysis of simultaneous Advanced Satellite for Cosmology and Astrophysics (ASCA) data. The ASCA spectrum of Capella could not be fit with standard models; by imposing models based on strong lines observed with EUVE, a problem wavelength region was identified. Correcting the problem required calculations of atomic collision strengths of higher principal quantum number than had ever been calculated. With these new models applied to the ASCA spectrum, better fits were obtained. Findings are that: (1) ASCA and EUVE spectra are both dominated by a region at 6 x 10(exp 6) K. (2) The high energy cut-off of the ASCA spectrum is consistent with emission from the highest ionization stages of EUVE, namely Fe XXIV. (3) EUVE requires a continuous emission measure distribution with more than two temperatures. (4) The ASCA spectra are of such high statistical significance that systematic uncertainties dominate, including atomic physics issues and calibration issues. (5) While the ASCA spectral fits achieve lower Chi(exp 2 with two-temperature fits, the EUVE-derived emission measure distribution models are also consistent with the spectra. (6) The Fe/H ratio obtained from the ASCA fit is within 20 % of the Fe/H abundance obtained from the summed spectra of Capella over 5 EUVE pointings, as well as the 1996 EUVE data. This result confirms our claims that quasi-continua composed of weak emission lines in the short wavelength spectrometer of EUVE are not major contributors to the measured Capella continuum. Other abundance ratios are also determined from the ASCA data, using models derived with EUVE. Si, Si, and Mg appear to be close to solar photospheric values, while the ratio of Ne/Fe is three to four times lower than solar photospheric values. Whether there is a general First Ionization Potential (FIP) effect or a specific neon anomaly cannot be determined

  3. Fresnel diffraction of aperture with rough edge

    NASA Astrophysics Data System (ADS)

    Cui, Yuwei; Zhang, Wei; Wang, Junhong; Zhang, Meina; Teng, Shuyun

    2015-06-01

    The Fresnel diffraction of an aperture with a rough edge is studied in this paper. Circular and elliptical apertures with sinusoidal and random edges are chosen as examples to investigate the influence of the aperture edge on the diffraction. The numerical calculation results indicate intuitively the variations of the transverse and longitude diffraction intensity distributions with the edge parameters of the aperture. The data files of aperture models are obtained through the numerical calculations, and the aperture samples are obtained with the help of a liquid crystal light modulator (LCLM). Thus, the practical experiments of the diffractions of apertures with rough edges are carried out. The measured results are consistent with the calculated ones. The approximate analytic expressions of the diffraction by the modified aperture are deduced on the basis of the Fresnel diffraction theory and the statistic optics, and the reasonable explanations for the influence of edge parameters on the diffraction are given through the theoretical analysis.

  4. Simulating photomask edge roughness and corner rounding

    NASA Astrophysics Data System (ADS)

    Adam, Konstantinos; Socha, Robert J.; Pistor, Thomas V.; Neureuther, Andrew R.

    1997-07-01

    Corner rounding and edge roughness of a rectangular opening at a glass-chrome mask are simulated with TEMPEST. The intensity patterns on the image plane are extracted and compared for these defects at several degrees of fabrication-induced imperfection. A 4X - DUV lithography printing system is assumed with NA equals 0.6 and (sigma) equals 0.5. The prototypical geometry simulate was a 4 micrometers X 1 micrometers line on the mask. The results indicate that the rounding of the corners does not decrease the printed area by more than 2 percent for a 0.4 micrometers radius corner rounding and that roughness should not be a concern, at least in DUV, since it does not crucially affect the linewidth of the printed area.

  5. Surface Roughness Reduction on Divinylbenzene Foam Shells

    NASA Astrophysics Data System (ADS)

    Streit, Jon; Karnes, John; Motta, Brian; Petta, Nicole

    2009-11-01

    Inertial fusion energy targets for the Naval Research Laboratory's High Average Power Laser Program require millimeter-scale, low density foam capsules with a gas permeation barrier and an outer surface roughness less than 50 nm RMS. Divinylbenzene (DVB) foam is a candidate for the capsule wall material, but its porous, open celled surface has been both too rough and difficult to seal. To overcome this difficulty we have repurposed a previously reported dual stage initiator emulsion microencapsulation method, adding an additional step that enhances the surface of the foam capsules. Using both low and high temperature initiators allows the DVB foam to gel in the low temperature stage and a water soluble monomer to be added and polymerized during the high temperature stage without breaking down the emulsion. This method forms a submicron skin that covers the open celled DVB foam surface, resulting in a superior substrate for gas permeation barrier deposition.

  6. Boltzmann active walkers and rough surfaces

    NASA Astrophysics Data System (ADS)

    Pochy, R. D.; Kayser, D. R.; Aberle, L. K.; Lam, L.

    1993-06-01

    An active walker model (AWM) was recently proposed by Freimuth and Lam for the generation of various filamentary patterns. In an AWM, the walker changes the landscape as it walks, and its steps are in turn influenced by the changing landscape. The landscape so obtained is a rough surface. In this paper, the properties of such a rough surface (with average height conserved) generated by a Boltzmann active walker in 1 + 1 dimensions is investigated in detail. The scaling properties of the surface thickness σ T is found to belong to a new class quite different from other types of fractal surfaces. For example, σ T is independent of the system size L, but is a function of the “temperature” T. Soliton propagation is found when T = 0.

  7. Replicated mask surface roughness effects on EUV lithographic patterning and line edge roughness

    NASA Astrophysics Data System (ADS)

    George, Simi A.; Naulleau, Patrick P.; Gullikson, Eric M.; Mochi, Iacopo; Salmassi, Farhad; Goldberg, Kenneth A.; Anderson, Erik H.

    2011-04-01

    To quantify the roughness contributions to speckle, a programmed roughness substrate was fabricated with a number of areas having different roughness magnitudes. The substrate was then multilayer coated. Atomic force microscopy (AFM) surface maps were collected before and after multilayer deposition. At-wavelength reflectance and total integrated scattering measurements were also completed. Angle resolved scattering based power spectral densities are directly compared to the AFM based power spectra. We show that AFM overpredicts the roughness in the picometer measurements range. The mask was then imaged at-wavelength for the direct characterization of the aerial image speckle using the SEMATECH Berkeley Actinic Inspection Tool (AIT). Modeling was used to test the effectiveness of the different metrologies in predicting the measured aerial-image speckle. AIT measured contrast values are 25% or more than the calculated image contrast values obtained using the measured rms roughness input. The extent to which the various metrologies can be utilized for specifying tolerable roughness limits on EUV masks is still to be determined. Further modeling and measurements are being planned.

  8. Replicated mask surface roughness effects on EUV lithographic pattering and line edge roughness

    SciTech Connect

    George, Simi A.; Naulleau, Patrick P.; Gullikson, Eric M.; Mochi, Iacopo; Salmassi, Farhad; Goldberg, Kenneth A.; Anderson, Erik H.

    2011-03-11

    To quantify the roughness contributions to speckle, a programmed roughness substrate was fabricated with a number of areas having different roughness magnitudes. The substrate was then multilayer coated. Atomic force microscopy (AFM) surface maps were collected before and after multilayer deposition. At-wavelength reflectance and total integrated scattering measurements were also completed. Angle resolved scattering based power spectral densities are directly compared to the AFM based power spectra. We show that AFM overpredicts the roughness in the picometer measurements range. The mask was then imaged at-wavelength for the direct characterization of the aerial image speckle using the SEMATECH Berkeley Actinic Inspection Tool (AIT). Modeling was used to test the effectiveness of the different metrologies in predicting the measured aerial-image speckle. AIT measured contrast values are 25% or more than the calculated image contrast values obtained using the measured rms roughness input. The extent to which the various metrologies can be utilized for specifying tolerable roughness limits on EUV masks is still to be determined. Further modeling and measurements are being planned.

  9. Recovery of ribophorins and ribosomes in "inverted rough" vesicles derived from rat liver rough microsomes

    PubMed Central

    1982-01-01

    Treatment of rat liver rough microsomes (3.5 mg of protein/ml) with sublytical concentrations (0.08%) of the neutral detergent Triton X-100 caused a lateral displacement of bound ribosomes and the formation of ribosomal aggregates on the microsomal surface. At slightly higher detergent concentrations (0.12-0.16%) membrane areas bearing ribosomal aggregates invaginated into the microsomal lumen and separated from the rest of the membrane. Two distinct classes of vesicles could be isolated by density gradient centrifugation from microsomes treated with 0.16% Triton X-100: one with ribosomes bound to the inner membrane surfaces ("inverted rough" vesicles) and another with no ribosomes attached to the membranes. Analysis of the fractions showed that approximately 30% of the phospholipids and 20-30% of the total membrane protein were released from the membranes by this treatment. Labeling with avidin-ferritin conjugates demonstrated that concanavalin A binding sites, which in native rough microsomes are found in the luminal face of the membranes, were present on the outer surface of the inverted rough vesicles. Freeze-fracture electron microscopy showed that both fracture faces had similar concentrations of intramembrane particles. SDS PAGE analysis of the two vesicle subfractions demonstrated that, of all the integral microsomal membrane proteins, only ribophorins I and II were found exclusively in the inverted rough vesicles bearing ribosomes. These observations are consistent with the proposal that ribophorins are associated with the ribosomal binding sites characteristic of rough microsomal membranes. PMID:7068749

  10. Rough primes and rough conversations: evidence for a modality-specific basis to mental metaphors

    PubMed Central

    Denke, Claudia; Heinze, Hans-Jochen; Rotte, Michael

    2014-01-01

    How does our brain organize knowledge? Traditional theories assume that our knowledge is represented abstractly in an amodal conceptual network of formal logic symbols. The theory of embodied cognition challenges this view and argues that conceptual representations that constitute our knowledge are grounded in sensory and motor experiences. We tested this hypothesis by examining how the concept of social coordination is grounded metaphorically in the tactile sensation of roughness. Participants experienced rough or smooth touch before being asked to judge an ambiguous social interaction. Results revealed that rough touch made social interactions appear more difficult and adversarial, consistent with the rough metaphor. This impact of tactile cues on social impressions was accompanied by a network including primary and secondary somatosensory cortices, amygdala, hippocampus and inferior prefrontal cortex. Thus, the roughness of tactile stimulation affected metaphor-relevant (but not metaphor-irrelevant) behavioral and neural responses. Receiving touch from a rough object seems to trigger the application of associated ontological concepts (or scaffolds) even for unrelated people and situations (but not to unrelated or more general feelings). Since this priming was based on somatosensory brain areas, our results provide support for the theory that sensorimotor grounding is intrinsic to cognitive processes. PMID:24097375

  11. The LPV Motif Is Essential for the Efficient Export of Secretory DMP1 From the Endoplasmic Reticulum.

    PubMed

    Liang, Tian; Meng, Tian; Wang, Suzhen; Qin, Chunlin; Lu, Yongbo

    2016-07-01

    Dentin matrix protein 1 (DMP1) is found abundantly in the extracellular matrices of bone and dentin. Secretory DMP1 begins with a tripeptide of leucine-proline-valine (LPV) after the endoplasmic reticulum (ER)-entry signal peptide is cleaved. The goal of this study was to determine the role of the LPV motif in the secretion of DMP1. A series of DNA constructs was generated to express various forms of DMP1 with or without the LPV motif. These constructs were transfected into a preosteoblast cell line, the MC3T3-E1 cells, and the subcellular localization and secretion of various forms of DMP1 were examined by immunofluorescent staining and Western-blotting analyses. Immunofluorescent staining showed that the LPV-containing DMP1 variants were primarily localized in the Golgi complex, whereas the LPV-lacking DMP1 variants were found abundantly within the ER. Western-blotting analyses demonstrated that the LPV-containing DMP1 variants were rapidly secreted from the transfected cells, as they did not accumulate within the cells, and the amounts increased in the conditioned media over time. In contrast, the LPV-lacking DMP1 variants were predominantly retained within the cells, and only small amounts were secreted out of the cells over time. These results suggest that the LPV motif is essential for the efficient export of secretory DMP1 from the ER to the Golgi complex. PMID:26595451

  12. Mimas - Photometric roughness and albedo map

    NASA Technical Reports Server (NTRS)

    Verbiscer, Anne J.; Veverka, Joseph

    1992-01-01

    The backscattering phase function asssociated with bright icy satellites may render Hapke's (1986) isotropic approximation to multiple scattering inadequate. A reanalysis is accordingly conducted here of the Voyager observations of Mimas, using a modification to Hapke's equation that accommodates anisotropic multiple scattering, in order to characterize the physical and photometric properties of the heavily cratered icy surface. The roughness parameter of Mimas is in this way redefined, and an accurate albedo map is obtained which deminstrates small latitudinal and longitudinal albedo variations.

  13. HIV-1 Protein Nef Inhibits Activity of ATP-binding Cassette Transporter A1 by Targeting Endoplasmic Reticulum Chaperone Calnexin*

    PubMed Central

    Jennelle, Lucas; Hunegnaw, Ruth; Dubrovsky, Larisa; Pushkarsky, Tatiana; Fitzgerald, Michael L.; Sviridov, Dmitri; Popratiloff, Anastas; Brichacek, Beda; Bukrinsky, Michael

    2014-01-01

    HIV-infected patients are at increased risk of developing atherosclerosis, in part due to an altered high density lipoprotein profile exacerbated by down-modulation and impairment of ATP-binding cassette transporter A1 (ABCA1) activity by the HIV-1 protein Nef. However, the mechanisms of this Nef effect remain unknown. Here, we show that Nef interacts with an endoplasmic reticulum chaperone calnexin, which regulates folding and maturation of glycosylated proteins. Nef disrupted interaction between calnexin and ABCA1 but increased affinity and enhanced interaction of calnexin with HIV-1 gp160. The Nef mutant that did not bind to calnexin did not affect the calnexin-ABCA1 interaction. Interaction with calnexin was essential for functionality of ABCA1, as knockdown of calnexin blocked the ABCA1 exit from the endoplasmic reticulum, reduced ABCA1 abundance, and inhibited cholesterol efflux; the same effects were observed after Nef overexpression. However, the effects of calnexin knockdown and Nef on cholesterol efflux were not additive; in fact, the combined effect of these two factors together did not differ significantly from the effect of calnexin knockdown alone. Interestingly, gp160 and ABCA1 interacted with calnexin differently; although gp160 binding to calnexin was dependent on glycosylation, glycosylation was of little importance for the interaction between ABCA1 and calnexin. Thus, Nef regulates the activity of calnexin to stimulate its interaction with gp160 at the expense of ABCA1. This study identifies a mechanism for Nef-dependent inactivation of ABCA1 and dysregulation of cholesterol metabolism. PMID:25170080

  14. Radiative transfer model for contaminated rough slabs.

    PubMed

    Andrieu, François; Douté, Sylvain; Schmidt, Frédéric; Schmitt, Bernard

    2015-11-01

    We present a semi-analytical model to simulate the bidirectional reflectance distribution function (BRDF) of a rough slab layer containing impurities. This model has been optimized for fast computation in order to analyze massive hyperspectral data by a Bayesian approach. We designed it for planetary surface ice studies but it could be used for other purposes. It estimates the bidirectional reflectance of a rough slab of material containing inclusions, overlaying an optically thick media (semi-infinite media or stratified media, for instance granular material). The inclusions are assumed to be close to spherical and constituted of any type of material other than the ice matrix. It can be any other type of ice, mineral, or even bubbles defined by their optical constants. We assume a low roughness and we consider the geometrical optics conditions. This model is thus applicable for inclusions larger than the considered wavelength. The scattering on the inclusions is assumed to be isotropic. This model has a fast computation implementation and thus is suitable for high-resolution hyperspectral data analysis. PMID:26560577

  15. Wenzel Wetting on Slippery Rough Surfaces

    NASA Astrophysics Data System (ADS)

    Stogin, Birgitt; Dai, Xianming; Wong, Tak-Sing

    2015-11-01

    Liquid repellency is an important surface property used in a wide range of applications including self-cleaning, anti-icing, anti-biofouling, and condensation heat transfer, and is characterized by apparent contact angle (θ*) and contact angle hysteresis (Δθ*). The Wenzel equation (1936) predicts θ* of liquids in the Wenzel state, and is one of the most fundamental equations in the wetting field. However, droplets in the Wenzel state on conventional rough surfaces exhibit large Δθ* , making it difficult to experimentally verify the model with precision. As a result, precise verification of the Wenzel wetting model has remained an open scientific question for the past 79 years. Here we introduce a new class of liquid-infused surfaces called slippery rough surfaces -- surfaces with significantly reduced Δθ* compared to conventional rough surfaces--and use them to experimentally assess the Wenzel equation with the highest precision to date. We acknowledge the funding support by National Science Foundation (NSF) CAREER Award #: 1351462 and Office of Navy Research MURI Award #: N00014-12-1-0875. Stogin acknowledges the support from the NSF Graduate Research Fellowship (Grant No. DGE1255832).

  16. Hypersonic Viscous Flow Over Large Roughness Elements

    NASA Technical Reports Server (NTRS)

    Chang, Chau-Lyan; Choudhari, Meelan M.

    2009-01-01

    Viscous flow over discrete or distributed surface roughness has great implications for hypersonic flight due to aerothermodynamic considerations related to laminar-turbulent transition. Current prediction capability is greatly hampered by the limited knowledge base for such flows. To help fill that gap, numerical computations are used to investigate the intricate flow physics involved. An unstructured mesh, compressible Navier-Stokes code based on the space-time conservation element, solution element (CESE) method is used to perform time-accurate Navier-Stokes calculations for two roughness shapes investigated in wind tunnel experiments at NASA Langley Research Center. It was found through 2D parametric study that at subcritical Reynolds numbers of the boundary layers, absolute instability resulting in vortex shedding downstream, is likely to weaken at supersonic free-stream conditions. On the other hand, convective instability may be the dominant mechanism for supersonic boundary layers. Three-dimensional calculations for a rectangular or cylindrical roughness element at post-shock Mach numbers of 4.1 and 6.5 also confirm that no self-sustained vortex generation is present.

  17. Soil Surface Roughness through Image Analysis

    NASA Astrophysics Data System (ADS)

    Tarquis, A. M.; Saa-Requejo, A.; Valencia, J. L.; Moratiel, R.; Paz-Gonzalez, A.; Agro-Environmental Modeling

    2011-12-01

    Soil erosion is a complex phenomenon involving the detachment and transport of soil particles, storage and runoff of rainwater, and infiltration. The relative magnitude and importance of these processes depends on several factors being one of them surface micro-topography, usually quantified trough soil surface roughness (SSR). SSR greatly affects surface sealing and runoff generation, yet little information is available about the effect of roughness on the spatial distribution of runoff and on flow concentration. The methods commonly used to measure SSR involve measuring point elevation using a pin roughness meter or laser, both of which are labor intensive and expensive. Lately a simple and inexpensive technique based on percentage of shadow in soil surface image has been developed to determine SSR in the field in order to obtain measurement for wide spread application. One of the first steps in this technique is image de-noising and thresholding to estimate the percentage of black pixels in the studied area. In this work, a series of soil surface images have been analyzed applying several de-noising wavelet analysis and thresholding algorithms to study the variation in percentage of shadows and the shadows size distribution. Funding provided by Spanish Ministerio de Ciencia e Innovación (MICINN) through project no. AGL2010- 21501/AGR and by Xunta de Galicia through project no INCITE08PXIB1621 are greatly appreciated.

  18. Modeling superhydrophobic surfaces comprised of random roughness

    NASA Astrophysics Data System (ADS)

    Samaha, M. A.; Vahedi Tafreshi, H.; Gad-El-Hak, M.

    2011-11-01

    We model the performance of superhydrophobic surfaces comprised of randomly distributed roughness that resembles natural surfaces, or those produced via random deposition of hydrophobic particles. Such a fabrication method is far less expensive than ordered-microstructured fabrication. The present numerical simulations are aimed at improving our understanding of the drag reduction effect and the stability of the air-water interface in terms of the microstructure parameters. For comparison and validation, we have also simulated the flow over superhydrophobic surfaces made up of aligned or staggered microposts for channel flows as well as streamwise or spanwise ridge configurations for pipe flows. The present results are compared with other theoretical and experimental studies. The numerical simulations indicate that the random distribution of surface roughness has a favorable effect on drag reduction, as long as the gas fraction is kept the same. The stability of the meniscus, however, is strongly influenced by the average spacing between the roughness peaks, which needs to be carefully examined before a surface can be recommended for fabrication. Financial support from DARPA, contract number W91CRB-10-1-0003, is acknowledged.

  19. Flow over a Biomimetic Surface Roughness Microgeometry

    NASA Astrophysics Data System (ADS)

    Warncke Lang, Amy; Hidalgo, Pablo; Westcott, Matthew

    2006-11-01

    Certain species of sharks (e.g. shortfin mako and common hammerhead) have a skin structure that could result in a bristling of their denticles (scales) during increased swimming speeds (Bechert, D. W., Bruse, M., Hage, W. and Meyer, R. 2000, Fluid mechanics of biological surfaces and their technological application. Naturwissenschaften 80:157-171). This unique surface geometry results in a three-dimensional array of cavities* (d-type roughness geometry) forming within the surface and has been given the acronym MAKO (Micro-roughness Array for Kinematic Optimization). Possible mechanisms leading to drag reduction over the shark's body by this unique roughness geometry include separation control thereby reducing pressure drag, skin friction reduction (via the `micro-air bearing' effect first proposed by Bushnell (AIAA 83-0227)), as well as possible transition delay in the boundary layer. Initial work is confined to scaling up the geometry from 0.2 mm on the shark skin to 2 cm, with a scaling down in characteristic velocity from 10 - 20 m/s to 10 - 20 cm/s for laminar flow boundary layer water tunnel studies. Support for this research by NSF SGER grant CTS-0630489 and a University of Alabama RAC grant is gratefully acknowledged. * Patent pending.

  20. Endoplasmic Reticulum Sorting and Kinesin-1 Command the Targeting of Axonal GABAB Receptors

    PubMed Central

    Valdés, Viviana; Valenzuela, José Ignacio; Salas, Daniela A.; Jaureguiberry-Bravo, Matías; Otero, Carolina; Thiede, Christina; Schmidt, Christoph F.; Couve, Andrés

    2012-01-01

    In neuronal cells the intracellular trafficking machinery controls the availability of neurotransmitter receptors at the plasma membrane, which is a critical determinant of synaptic strength. Metabotropic γ amino-butyric acid (GABA) type B receptors (GABABRs) are neurotransmitter receptors that modulate synaptic transmission by mediating the slow and prolonged responses to GABA. GABABRs are obligatory heteromers constituted by two subunits, GABABR1 and GABABR2. GABABR1a and GABABR1b are the most abundant subunit variants. GABABR1b is located in the somatodendritic domain whereas GABABR1a is additionally targeted to the axon. Sushi domains located at the N-terminus of GABABR1a constitute the only difference between both variants and are necessary and sufficient for axonal targeting. The precise targeting machinery and the organelles involved in sorting and transport have not been described. Here we demonstrate that GABABRs require the Golgi apparatus for plasma membrane delivery but that axonal sorting and targeting of GABABR1a operate in a pre-Golgi compartment. In the axon GABABR1a subunits are enriched in the endoplasmic reticulum (ER), and their dynamic behavior and colocalization with other secretory organelles like the ER-to-Golgi intermediate compartment (ERGIC) suggest that they employ a local secretory route. The transport of axonal GABABR1a is microtubule-dependent and kinesin-1, a molecular motor of the kinesin family, determines axonal localization. Considering that progression of GABABRs through the secretory pathway is regulated by an ER retention motif our data contribute to understand the role of the axonal ER in non-canonical sorting and targeting of neurotransmitter receptors. PMID:22952914

  1. Uncovering a Dual Regulatory Role for Caspases During Endoplasmic Reticulum Stress-induced Cell Death

    PubMed Central

    Anania, Veronica G.; Yu, Kebing; Gnad, Florian; Pferdehirt, Rebecca R.; Li, Han; Ma, Taylur P.; Jeon, Diana; Fortelny, Nikolaus; Forrest, William; Ashkenazi, Avi; Overall, Christopher M.; Lill, Jennie R.

    2016-01-01

    Many diseases are associated with endoplasmic reticulum (ER) stress, which results from an accumulation of misfolded proteins. This triggers an adaptive response called the “unfolded protein response” (UPR), and prolonged exposure to ER stress leads to cell death. Caspases are reported to play a critical role in ER stress-induced cell death but the underlying mechanisms by which they exert their effect continue to remain elusive. To understand the role caspases play during ER stress, a systems level approach integrating analysis of the transcriptome, proteome, and proteolytic substrate profile was employed. This quantitative analysis revealed transcriptional profiles for most human genes, provided information on protein abundance for 4476 proteins, and identified 445 caspase substrates. Based on these data sets many caspase substrates were shown to be downregulated at the protein level during ER stress suggesting caspase activity inhibits their cellular function. Additionally, RNA sequencing revealed a role for caspases in regulation of ER stress-induced transcriptional pathways and gene set enrichment analysis showed expression of multiple gene targets of essential transcription factors to be upregulated during ER stress upon inhibition of caspases. Furthermore, these transcription factors were degraded in a caspase-dependent manner during ER stress. These results indicate that caspases play a dual role in regulating the cellular response to ER stress through both post-translational and transcriptional regulatory mechanisms. Moreover, this study provides unique insight into progression of the unfolded protein response into cell death, which may help identify therapeutic strategies to treat ER stress-related diseases. PMID:27125827

  2. Overexpression of endoplasmic reticulum omega-3 fatty acid desaturase gene improves chilling tolerance in tomato.

    PubMed

    Yu, Chao; Wang, Hua-Sen; Yang, Sha; Tang, Xian-Feng; Duan, Ming; Meng, Qing-Wei

    2009-01-01

    An endoplasmic reticulum-localized tomato omega-3 fatty acid desaturase gene (LeFAD3) was isolated and characterized with regard to its sequence, response to various temperatures and function in transgenic tomato plants. Northern blot analysis showed that LeFAD3 was expressed in all organs tested and was markedly abundant in roots. Meanwhile, the expression of LeFAD3 was induced by chilling stress (4 degrees C), but inhibited by high temperature (40 degrees C). The transgenic plants were obtained under the control of the cauliflower mosaic virus 35S promoter (35S-CaMV). Northern and western blot analyses confirmed that sense LeFAD3 was transferred into tomato genome and overexpressed. Level of linolenic acids (18:3) increased and correspondingly level of linoleic acid (18:2) decreased in leaves and roots. After chilling stress, the fresh weight of the aerial parts of transgenic plants was higher than that of the wild type (WT) plants, and the membrane system ultrastructure of chloroplast in leaf cell and all the subcellular organelles in root tips of transgenic plants kept more intact than those of WT. Relative electric conductivity increased less in transgenic plants than that in WT, and the respiration rate of the transgenic plants was notably higher than that of WT. The maximal photochemical efficiency of PSII (F(v)/F(m)) and the O(2) evolution rate in WT decreased more than those in transgenic plants under chilling stress. Together with other data, results showed that the overexpression of LeFAD3 led to increased level of 18:3 and alleviated the injuries under chilling stress. PMID:19648018

  3. Role of endoplasmic reticulum stress in acrolein-induced endothelial activation

    SciTech Connect

    Haberzettl, Petra; Vladykovskaya, Elena; Srivastava, Sanjay; Bhatnagar, Aruni

    2009-01-01

    Acrolein is a ubiquitous environmental pollutant and an endogenous product of lipid peroxidation. It is also generated during the metabolism of several drugs and amino acids. In this study, we examined the effects of acrolein on endothelial cells. Treatment of human umbilical vein endothelial cells (HUVECs) with 2 to 10 {mu}M acrolein led to an increase in the phosphorylation of eIF-2{alpha} within 10 to 30 min of exposure. This was followed by alternate splicing of XBP-1 mRNA and an increase in the expression of the endoplasmic reticulum (ER) chaperone genes Grp78 and Herp. Within 2-4 h of treatment, acrolein also increased the abundance and the nuclear transport of the transcription factors ATF3, AFT4, and CHOP. Acrolein-induced increase in ATF3 was prevented by treating the cells with the chemical chaperone - phenylbutyric acid (PBA). Treatment with acrolein increased phosphorylation of ERK1/2, p38, and JNK. The increase in JNK phosphorylation was prevented by PBA. Acrolein treatment led to activation and nuclear translocation of the transcription factor NF-{kappa}B and an increase in TNF-{alpha}, IL-6 and IL-8, but not MCP-1, mRNA. Increased expression of cytokine genes and NF-{kappa}B activation were not observed in cells treated with PBA. These findings suggest that exposure to acrolein induces ER stress and triggers the unfolded protein response and that NF-{kappa}B activation and stimulation of cytokine production by acrolein could be attributed, in part, to ER stress. Chemical chaperones of protein-folding may be useful in treating toxicological and pathological states associated with excessive acrolein exposure or production.

  4. ROLE OF ENDOPLASMIC RETICULUM STRESS IN ACROLEIN-INDUCED ENDOTHELIAL ACTIVATION

    PubMed Central

    Haberzettl, Petra; Vladykovskaya, Elena; Srivastava, Sanjay; Bhatnagar, Aruni

    2010-01-01

    Acrolein is a ubiquitous environmental pollutant and an endogenous product of lipid peroxidation. It is also generated during the metabolism of several drugs and amino acids. In this study, we examined the effects of acrolein on endothelial cells. Treatment of human umbilical vein endothelial cells (HUVECs) with 2 to 10 μM acrolein led to an increase in the phosphorylation of eIF-2α within 10 to 30 min of exposure. This was followed by alternate splicing of XBP-1 mRNA and an increase in the expression of the endoplasmic reticulum (ER) chaperone genes Grp78 and Herp. Within 2–4 h of treatment, acrolein also increased the abundance and the nuclear transport of the transcription factors ATF3, AFT4, and CHOP. Acrolein-induced increase in ATF3 was prevented by treating the cells with the chemical chaperone – phenylbutryic acid (PBA). Treatment with acrolein increased phosphorylation of ERK1/2, p38, and JNK. The increase in JNK phosphorylation was prevented by PBA. Acrolein treatment led to the activation and nuclear translocation of the transcription factor NF-κB and an increase in TNF-α, IL-6 and IL-8, but not MCP-1, mRNA. Increased synthesis of cytokine genes and NF-κB activation were not observed in cells treated with PBA. These findings suggest that exposure to acrolein induces ER stress and triggers the unfolded protein response and that NF-κB activation and stimulation of cytokine production by acrolein could be attributed, in part, to ER stress. Chemical chaperones of protein-folding may be useful in treating toxicological and pathological states associated with excessive acrolein exposure or production. PMID:18951912

  5. Proteomic characterisation of endoplasmic reticulum-derived protein bodies in tobacco leaves

    PubMed Central

    2012-01-01

    Background The N-terminal proline-rich domain (Zera) of the maize storage protein γ-zein, is able to induce the formation of endoplasmic reticulum (ER)-derived protein bodies (PBs) when fused to proteins of interest. This encapsulation enables a recombinant fused protein to escape from degradation and facilitates its recovery from plant biomass by gradient purification. The aim of the present work was to evaluate if induced PBs encapsulate additional proteins jointly with the recombinant protein. The exhaustive analysis of protein composition of PBs is expected to facilitate a better understanding of PB formation and the optimization of recombinant protein purification approaches from these organelles. Results We analysed the proteome of PBs induced in Nicotiana benthamiana leaves by transient transformation with Zera fused to a fluorescent marker protein (DsRed). Intact PBs with their surrounding ER-membrane were isolated on iodixanol based density gradients and their integrity verified by confocal and electron microscopy. SDS-PAGE analysis of isolated PBs showed that Zera-DsRed accounted for around 85% of PB proteins in term of abundance. Differential extraction of PBs was performed for in-depth analysis of their proteome and structure. Besides Zera-DsRed, 195 additional proteins were identified including a broad range of proteins resident or trafficking through the ER and recruited within the Zera-DsRed polymer. Conclusions This study indicates that Zera-protein fusion is still the major protein component of the new formed organelle in tobacco leaves. The analysis also reveals the presence of an unexpected diversity of proteins in PBs derived from both the insoluble Zera-DsRed polymer formation, including ER-resident and secretory proteins, and a secretory stress response induced most likely by the recombinant protein overloading. Knowledge of PBs protein composition is likely to be useful to optimize downstream purification of recombinant proteins in molecular

  6. Neuronal gamma-aminobutyric acid (GABA) type A receptors undergo cognate ligand chaperoning in the endoplasmic reticulum by endogenous GABA

    PubMed Central

    Wang, Ping; Eshaq, Randa S.; Meshul, Charles K.; Moore, Cynthia; Hood, Rebecca L.; Leidenheimer, Nancy J.

    2015-01-01

    GABAA receptors mediate fast inhibitory neurotransmission in the brain. Dysfunction of these receptors is associated with various psychiatric/neurological disorders and drugs targeting this receptor are widely used therapeutic agents. Both the efficacy and plasticity of GABAA receptor-mediated neurotransmission depends on the number of surface GABAA receptors. An understudied aspect of receptor cell surface expression is the post-translational regulation of receptor biogenesis within the endoplasmic reticulum (ER). We have previously shown that exogenous GABA can act as a ligand chaperone of recombinant GABAA receptors in the early secretory pathway leading us to now investigate whether endogenous GABA facilitates the biogenesis of GABAA receptors in primary cerebral cortical cultures. In immunofluorescence labeling experiments, we have determined that neurons expressing surface GABAA receptors contain both GABA and its degradative enzyme GABA transaminase (GABA-T). Treatment of neurons with GABA-T inhibitors, a treatment known to increase intracellular GABA levels, decreases the interaction of the receptor with the ER quality control protein calnexin, concomittantly increasing receptor forward-trafficking and plasma membrane insertion. The effect of GABA-T inhibition on the receptor/calnexin interaction is not due to the activation of surface GABAA or GABAB receptors. Consistent with our hypothesis that GABA acts as a cognate ligand chaperone in the ER, immunogold-labeling of rodent brain slices reveals the presence of GABA within the rough ER. The density of this labeling is similar to that present in mitochondria, the organelle in which GABA is degraded. Lastly, the effect of GABA-T inhibition on the receptor/calnexin interaction was prevented by pretreatment with a GABA transporter inhibitor. Together, these data indicate that endogenous GABA acts in the rough ER as a cognate ligand chaperone to facilitate the biogenesis of neuronal GABAA receptors. PMID

  7. Toll-like receptor 4-induced endoplasmic reticulum stress contributes to endothelial dysfunction

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Impairment of vasodilator action of insulin is associated with endothelial dysfunction and insulin resistance. Endoplasmic reticulum (ER) stress is implicated as one of the mechanisms for pathophysiology of various cardiometabolic syndromes, including insulin resistance and endothelial dysfunction. ...

  8. Unfolded protein stress in the endoplasmic reticulum and mitochondria: a role in neurodegeneration

    PubMed Central

    Bernales, Sebastián; Soto, Marisol Morales; McCullagh, Emma

    2012-01-01

    Protein-folding occurs in several intracellular locations including the endoplasmic reticulum and mitochondria. In normal conditions there is a balance between the levels of unfolded proteins and protein folding machinery. Disruption of homeostasis and an accumulation of unfolded proteins trigger stress responses, or unfolded protein responses (UPR), in these organelles. These pathways signal to increase the folding capacity, inhibit protein import or expression, increase protein degradation, and potentially trigger cell death. Many aging-related neurodegenerative diseases involve the accumulation of misfolded proteins in both the endoplasmic reticulum and mitochondria. The exact participation of the UPRs in the onset of neurodegeneration is unclear, but there is significant evidence for the alteration of these pathways in the endoplasmic reticulum and mitochondria. Here we will discuss the involvement of endoplasmic reticulum and mitochondrial stress and the possible contributions of the UPR in these organelles to the development of two neurodegenerative diseases, Parkinson's disease (PD) and Alzheimer's disease (AD). PMID:22539924

  9. Fault zone roughness controls slip stability

    NASA Astrophysics Data System (ADS)

    Harbord, Christopher; Nielsen, Stefan; De Paola, Nicola

    2016-04-01

    Fault roughness is an important control factor in the mechanical behaviour of fault zones, in particular the frictional slip stability and subsequent earthquake nucleation. Despite this, there is little experimental quantification as to the effects of varying roughness upon rate- and state-dependant friction (RSF). Utilising a triaxial deformation apparatus and a novel adaptation of the direct shear methodology to simulate initially bare faults in Westerly Granite, we performed a series of velocity step frictional sliding experiments. Initial root mean square roughnesses (Sq) was varied in the range 6x10‑7 ‑ 2.4x10‑5 m. We also investigated the effects upon slip stability of normal stress variation in the range σn = 30 ‑ 200 MPa, and slip velocity between 0.1 ‑ 10 μm s‑1. A transition from stable sliding to unstable slip (manifested by stick-slip and slow slip events) was observed, depending on the parameter combination, thus covering the full spectrum of fault slip behaviours. At low normal stress (σn = 30MPa) smooth faults (Sq< 1x10‑6 m) are conditional unstable (stress drops on slow slip events upon velocity increase), with strongly velocity weakening friction. When normal stress is increased to intermediate values (σn = 100 ‑ 150 MPa), smooth faults (Sq< 1x10‑6 m) are fully unstable and generate seismic stick-slip behaviour. However at higher normal stress (σn = 200 MPa) a transition from unstable to stable sliding is observed for smooth faults, which is not expected using RSF stability criteria. At all conditions sliding is stable for rough faults (Sq> 1x10‑6 m). We find that instability can develop when the ratio of fault to critical stiffness kf kc > 10, or, alternatively, even when a ‑ b > 0 at σn = 150MPa, suggesting that bare surfaces may not strictly obey the R+S stability condition. Additionally we present white light interferometry and SEM analysis of experimentally deformed samples which provide information about the

  10. Different Effects of Roughness (Granularity) and Hydrophobicity

    NASA Astrophysics Data System (ADS)

    Shirtcliffe, Neil; McHale, Glen; Hamlett, Christopher; Newton, Michael

    2010-05-01

    With thanks to Stefan Doerr and Jorge Mataix-Solera for their invitation Superhydrophobicity is an interesting effect that appears to be simple on the outset; increased surface area from roughness increases interfacial area and therefore energy loss or gain. More extreme roughness prevents total wetting, resulting in gas pockets present at the surface and a drastic change in the properties of the system. Increases in complexity of the system, by adding porosity (granularity), allowing the structures to move, varying the shape of the roughness or the composition of the liquid used often has unexpected effects. Here we will consider a few of these related to complex topography. Overhanging features are commonly used in test samples as they perform better in some tests than simple roughness. It has been shown to be a prerequisite for superoleophobic surfaces as it allows liquids to be suspended for contact angles considerably below 90°. It also allows trapping of gas in lower layers even if the first layer is flooded. This is important in soils as a fixed bed of granules behaves just like a surface with overhanging roughness. Using simple geometry it is possible to predict at what contact angle penetration will occur. Plants have some structured superhydrophobic surfaces and we have shown that some use them in conjunction with other structured surfaces to control water flows. This allows some plants to survive in difficult environments and shows us how subtly different structures interact completely differently with water. Long fibres can either cause water droplets to roll over a plant surface or halt it in its tracks. Implications of this in soils include predicting when particles will adhere more strongly to water drops and why organic fibrous material may play a greater role in the behaviour of water in soils than may be expected from the amount present. The garden snail uses a biosurfactant that is very effective at wetting surfaces and can crawl over most

  11. Capella: Structure and Abundances

    NASA Technical Reports Server (NTRS)

    Brickhouse, Nancy S.

    1999-01-01

    This grant covers the analysis of ASCA spectra of the cool star binary system Capella. This project has also required the analysis of simultaneous EUVE data. The ASCA spectrum of Capella could not be fit with standard models; by imposing models based on strong lines observed with EUVE, a problem wavelength region was identified. Correcting the problem required calculations of atomic collision strengths of higher principal quantum number than had ever been calculated, resulting in a paper in process by Liedahl and Brickhouse. With these new models applied to the ASCA spectrum, better fits were obtained. While solar abundance ratios are generally consistent with the ASCA data, the ratio of Ne/Fe is three to four times lower than solar photospheric values. Whether there is a general First Ionization Potential (FIP) effect or a specific neon anomaly cannot be determined from these data. Detailed discussion has been provided to NASA in the most recent annual report (1997). Two poster presentations have been made regarding modeling requirements. A substantial paper is in the final revision form, following review by six co-authors. The results of this work have wide implications, since the newly calculated emission lines almost certainly contribute to other problems in fitting not only other stellar spectra, but also composite supernova remnants, galaxies, and cooling flow clusters of galaxies. Furthermore, Liedahl and Brickhouse have identified other species for which lines of a similar nature (high principal quantum number) will contribute significant flux. For moderate resolution X-ray spectra, lines left out of the models in relatively isolated bands, will be attributed to continuum flux by spectral fitting engines, causing errors in line-to-continuum ratios. Thus addressing the general theoretical problem is of crucial importance.

  12. Abundances in dwarf irregular galaxies

    NASA Technical Reports Server (NTRS)

    Dufour, Reginald J.

    1986-01-01

    The results of abundance studies of dwarf irregular galaxies and similar objects are reviewed with special attention to variations in the CNO element group. Observations of the forbidden N II and semiforbidden C III lines in the most metal-poor galaxy known, IZw 18, are presented for the first time and CNO abundances are derived via a photoionization model and discussed in the context of the abundances found in other metal-poor H II regions and galaxies.

  13. The antioxidant machinery of the endoplasmic reticulum: Protection and signaling.

    PubMed

    Delaunay-Moisan, Agnès; Appenzeller-Herzog, Christian

    2015-06-01

    Cellular metabolism is inherently linked to the production of oxidizing by-products, including reactive oxygen species (ROS) hydrogen peroxide (H2O2). When present in excess, H2O2 can damage cellular biomolecules, but when produced in coordinated fashion, it typically serves as a mobile signaling messenger. It is therefore not surprising that cell health critically relies on both low-molecular-weight and enzymatic antioxidant components, which protect from ROS-mediated damage and shape the propagation and duration of ROS signals. This review focuses on H2O2-antioxidant cross talk in the endoplasmic reticulum (ER), which is intimately linked to the process of oxidative protein folding. ER-resident or ER-regulated sources of H2O2 and other ROS, which are subgrouped into constitutive and stimulated sources, are discussed and set into context with the diverse antioxidant mechanisms in the organelle. These include two types of peroxide-reducing enzymes, a high concentration of glutathione derived from the cytosol, and feedback-regulated thiol-disulfide switches, which negatively control the major ER oxidase ER oxidoreductin-1. Finally, new evidence highlighting emerging principles of H2O2-based cues at the ER will likely set a basis for establishing ER redox processes as a major line of future signaling research. A fundamental problem that remains to be solved is the specific, quantitative, time resolved, and targeted detection of H2O2 in the ER and in specialized ER subdomains. PMID:25744411

  14. Endoplasmic reticulum: Where nucleotide sugar transport meets cytokinin control mechanisms

    PubMed Central

    Niemann, Michael CE; Werner, Tomáš

    2015-01-01

    The endoplasmic reticulum (ER) is a multifunctional eukaryotic organelle where the vast majority of secretory proteins are folded and assembled to achieve their correct tertiary structures. The lumen of the ER and Golgi apparatus also provides an environment for numerous glycosylation reactions essential for modifications of proteins and lipids, and for cell wall biosynthesis. These glycosylation reactions require a constant supply of cytosolically synthesized substrate precursors, nucleotide sugars, which are transported by a group of dedicated nucleotide sugar transporters (NST). Recently, we have reported on the identification of a novel ER-localized NST protein, ROCK1, which mediates the transport of UDP-linked acetylated hexosamines across the ER membrane in Arabidopsis. Interestingly, it has been demonstrated that the activity of ROCK1 is important for the regulation of cytokinin-degrading enzymes, cytokinin oxidases/dehydrogenases (CKX), in the ER and, thus, for cytokinin responses. In this addendum we will address the biochemical and cellular activity of the ROCK1 transporter and its phylogenetic relation to other NST proteins. PMID:26418963

  15. A Molecular Web: Endoplasmic Reticulum Stress, Inflammation, and Oxidative Stress

    PubMed Central

    Chaudhari, Namrata; Talwar, Priti; Parimisetty, Avinash; Lefebvre d’Hellencourt, Christian; Ravanan, Palaniyandi

    2014-01-01

    Execution of fundamental cellular functions demands regulated protein folding homeostasis. Endoplasmic reticulum (ER) is an active organelle existing to implement this function by folding and modifying secretory and membrane proteins. Loss of protein folding homeostasis is central to various diseases and budding evidences suggest ER stress as being a major contributor in the development or pathology of a diseased state besides other cellular stresses. The trigger for diseases may be diverse but, inflammation and/or ER stress may be basic mechanisms increasing the severity or complicating the condition of the disease. Chronic ER stress and activation of the unfolded-protein response (UPR) through endogenous or exogenous insults may result in impaired calcium and redox homeostasis, oxidative stress via protein overload thereby also influencing vital mitochondrial functions. Calcium released from the ER augments the production of mitochondrial Reactive Oxygen Species (ROS). Toxic accumulation of ROS within ER and mitochondria disturbs fundamental organelle functions. Sustained ER stress is known to potentially elicit inflammatory responses via UPR pathways. Additionally, ROS generated through inflammation or mitochondrial dysfunction could accelerate ER malfunction. Dysfunctional UPR pathways have been associated with a wide range of diseases including several neurodegenerative diseases, stroke, metabolic disorders, cancer, inflammatory disease, diabetes mellitus, cardiovascular disease, and others. In this review, we have discussed the UPR signaling pathways, and networking between ER stress-induced inflammatory pathways, oxidative stress, and mitochondrial signaling events, which further induce or exacerbate ER stress. PMID:25120434

  16. Probing Endoplasmic Reticulum Dynamics using Fluorescence Imaging and Photobleaching Techniques

    PubMed Central

    Costantini, Lindsey; Snapp, Erik

    2013-01-01

    This UNIT describes approaches and tools for studying the dynamics and organization of endoplasmic reticulum (ER) membranes and proteins in living cells using commercially available widefield and confocal laser scanning microscopes (CLSM). It has been long appreciated that the ER plays a number of key roles in secretory protein biogenesis, calcium regulation, and lipid synthesis. However, study of these processes has been often restricted to biochemical assays that average the behaviors of millions of lysed cells or to imaging static fixed cells. Now, with new fluorescent protein reporter tools, highly sensitive commercial microscopes, and photobleaching techniques, it is possible to interrogate the behaviors of ER proteins, membranes, and stress pathways in single cells with exquisite spatial and temporal resolution. The ER presents a unique set of imaging challenges including the high mobility of ER membranes, a diverse range of dynamic ER structures, and the influence of post-translational modifications on fluorescent protein reporters. Solutions to these challenges are described and considerations for performing photobleaching assays, especially Fluorescence Recovery after Photobleaching (FRAP) and Fluorescence Loss in Photobleaching (FLIP) for ER proteins will be discussed. In addition, ER reporters and ER-specific pharmacologic compounds are presented with a focus on misfolded secretory protein stress and the Unfolded Protein Response (UPR). PMID:24510787

  17. Endoplasmic Reticulum Stress Interacts With Inflammation in Human Diseases

    PubMed Central

    Cao, Stewart Siyan; Luo, Katherine L.; Shi, Lynn

    2015-01-01

    The endoplasmic reticulum is a critical organelle for normal cell function and homeostasis. Disturbed protein folding process in the ER, termed ER stress, leads to the activation of unfolded protein response (UPR) that encompasses a complex network of intracellular signaling pathways. The UPR can either restore ER homeostasis or activate pro-apoptotic pathways depending on specific insults, intensity and duration of the stress, and cell types. ER stress and the UPR have recently been linked to inflammation in a variety of human pathologies including autoimmune diseases, infection, neurodegenerative disease, and metabolic disorders. In the cell, ER stress and inflammatory signaling share extensive regulators and effectors in a broad spectrum of biological processes. In spite of different etiologies, the two signaling pathways were shown to form a vicious cycle in exacerbating cellular dysfunction and causing apoptosis in many cells and tissues. However, the interaction between ER stress and inflammation in many of these diseases remains elusive. Further understanding of those issues may enable the development of novel therapies that spontaneously target these pathogenic pathways. PMID:26201832

  18. Protein Bodies in Leaves Exchange Contents through the Endoplasmic Reticulum.

    PubMed

    Saberianfar, Reza; Sattarzadeh, Amirali; Joensuu, Jussi J; Kohalmi, Susanne E; Menassa, Rima

    2016-01-01

    Protein bodies (PBs) are organelles found in seeds whose main function is the storage of proteins that are used during germination for sustaining growth. PBs can also be induced to form in leaves when foreign proteins are produced at high levels in the endoplasmic reticulum (ER) and when fused to one of three tags: Zera®, elastin-like polypeptides (ELP), or hydrophobin-I (HFBI). In this study, we investigate the differences between ELP, HFBI and Zera PB formation, packing, and communication. Our results confirm the ER origin of all three fusion-tag-induced PBs. We show that secretory pathway proteins can be sequestered into all types of PBs but with different patterns, and that different fusion tags can target a specific protein to different PBs. Zera PBs are mobile and dependent on actomyosin motility similar to ELP and HFBI PBs. We show in vivo trafficking of proteins between PBs using GFP photoconversion. We also show that protein trafficking between ELP or HFBI PBs is faster and proteins travel further when compared to Zera PBs. Our results indicate that fusion-tag-induced PBs do not represent terminally stored cytosolic organelles, but that they form in, and remain part of the ER, and dynamically communicate with each other via the ER. We hypothesize that the previously documented PB mobility along the actin cytoskeleton is associated with ER movement rather than independent streaming of detached organelles. PMID:27242885

  19. Proper symmetric and asymmetric endoplasmic reticulum partitioning requires astral microtubules.

    PubMed

    Smyth, Jeremy T; Schoborg, Todd A; Bergman, Zane J; Riggs, Blake; Rusan, Nasser M

    2015-08-01

    Mechanisms that regulate partitioning of the endoplasmic reticulum (ER) during cell division are largely unknown. Previous studies have mostly addressed ER partitioning in cultured cells, which may not recapitulate physiological processes that are critical in developing, intact tissues. We have addressed this by analysing ER partitioning in asymmetrically dividing stem cells, in which precise segregation of cellular components is essential for proper development and tissue architecture. We show that in Drosophila neural stem cells, called neuroblasts, the ER asymmetrically partitioned to centrosomes early in mitosis. This correlated closely with the asymmetric nucleation of astral microtubules (MTs) by centrosomes, suggesting that astral MT association may be required for ER partitioning by centrosomes. Consistent with this, the ER also associated with astral MTs in meiotic Drosophila spermatocytes and during syncytial embryonic divisions. Disruption of centrosomes in each of these cell types led to improper ER partitioning, demonstrating the critical role for centrosomes and associated astral MTs in this process. Importantly, we show that the ER also associated with astral MTs in cultured human cells, suggesting that this centrosome/astral MT-based partitioning mechanism is conserved across animal species. PMID:26289801

  20. The endoplasmic reticulum: a social network in plant cells.

    PubMed

    Chen, Jun; Doyle, Caitlin; Qi, Xingyun; Zheng, Huanquan

    2012-11-01

    The endoplasmic reticulum (ER) is an interconnected network comprised of ribosome-studded sheets and smooth tubules. The ER plays crucial roles in the biosynthesis and transport of proteins and lipids, and in calcium (Ca(2+) ) regulation in compartmentalized eukaryotic cells including plant cells. To support its well-segregated functions, the shape of the ER undergoes notable changes in response to both developmental cues and outside influences. In this review, we will discuss recent findings on molecular mechanisms underlying the unique morphology and dynamics of the ER, and the importance of the interconnected ER network in cell polarity. In animal and yeast cells, two family proteins, the reticulons and DP1/Yop1, are required for shaping high-curvature ER tubules, while members of the atlastin family of dynamin-like GTPases are involved in the fusion of ER tubules to make an interconnected ER network. In plant cells, recent data also indicate that the reticulons are involved in shaping ER tubules, while RHD3, a plant member of the atlastin GTPases, is required for the generation of an interconnected ER network. We will also summarize the current knowledge on how the ER interacts with other membrane-bound organelles, with a focus on how the ER and Golgi interplay in plant cells. PMID:23046093

  1. Paclitaxel inhibits selenoprotein S expression and attenuates endoplasmic reticulum stress.

    PubMed

    Qin, Hong-Shuang; Yu, Pei-Pei; Sun, Ying; Wang, Dan-Feng; Deng, Xiao-Fen; Bao, Yong-Li; Song, Jun; Sun, Lu-Guo; Song, Zhen-Bo; Li, Yu-Xin

    2016-06-01

    The primary effect of the endoplasmic reticulum (ER) stress response or unfolded protein response (UPR) is to reduce the load of unfolded protein and promote survival. However, prolonged and severe ER stress leads to tissue injury and serious diseases. Thus, it is important to identify drugs that can attenuate ER stress for the treatment of diseases. Natural products continue to provide lead compounds for drug discovery and front‑line pharmacotherapy for people worldwide. Previous studies have indicated that selenoprotein S (SelS) is a sensitive and ideal maker of ER stress. In the present study, a firefly luciferase reporter driven by the SelS gene promoter was used to screen for natural compounds capable of attenuating ER stress. From this, paclitaxel (PTX) was identified to efficiently inhibit the promoter activity of the SelS gene, and further results revealed that PTX significantly inhibited the tunicamycin‑induced upregulation of SelS at the mRNA and protein levels in HepG2 and HEK293T cells. In addition, PTX was able to efficiently inhibit the expression of the ER stress marker, glucose‑regulated protein 78, in ER stress, indicating that PTX may reverse ER stress. Taken together, these results suggest that PTX is able to inhibit SelS expression during ER stress and attenuate ER stress. PMID:27109260

  2. Proper symmetric and asymmetric endoplasmic reticulum partitioning requires astral microtubules

    PubMed Central

    Smyth, Jeremy T.; Schoborg, Todd A.; Bergman, Zane J.; Riggs, Blake; Rusan, Nasser M.

    2015-01-01

    Mechanisms that regulate partitioning of the endoplasmic reticulum (ER) during cell division are largely unknown. Previous studies have mostly addressed ER partitioning in cultured cells, which may not recapitulate physiological processes that are critical in developing, intact tissues. We have addressed this by analysing ER partitioning in asymmetrically dividing stem cells, in which precise segregation of cellular components is essential for proper development and tissue architecture. We show that in Drosophila neural stem cells, called neuroblasts, the ER asymmetrically partitioned to centrosomes early in mitosis. This correlated closely with the asymmetric nucleation of astral microtubules (MTs) by centrosomes, suggesting that astral MT association may be required for ER partitioning by centrosomes. Consistent with this, the ER also associated with astral MTs in meiotic Drosophila spermatocytes and during syncytial embryonic divisions. Disruption of centrosomes in each of these cell types led to improper ER partitioning, demonstrating the critical role for centrosomes and associated astral MTs in this process. Importantly, we show that the ER also associated with astral MTs in cultured human cells, suggesting that this centrosome/astral MT-based partitioning mechanism is conserved across animal species. PMID:26289801

  3. Proteomic analysis of endoplasmic reticulum stress responses in rice seeds.

    PubMed

    Qian, Dandan; Tian, Lihong; Qu, Leqing

    2015-01-01

    The defects in storage proteins secretion in the endosperm of transgenic rice seeds often leads to endoplasmic reticulum (ER) stress, which produces floury and shrunken seeds, but the mechanism of this response remains unclear. We used an iTRAQ-based proteomics analysis of ER-stressed rice seeds due to the endosperm-specific suppression of OsSar1 to identify changes in the protein levels in response to ER stress. ER stress changed the expression of 405 proteins in rice seed by >2.0- fold compared with the wild-type control. Of these proteins, 140 were upregulated and 265 were downregulated. The upregulated proteins were mainly involved in protein modification, transport and degradation, and the downregulated proteins were mainly involved in metabolism and stress/defense responses. A KOBAS analysis revealed that protein-processing in the ER and degradation-related proteasome were the predominant upregulated pathways in the rice endosperm in response to ER stress. Trans-Golgi protein transport was also involved in the ER stress response. Combined with bioinformatic and molecular biology analyses, our proteomic data will facilitate our understanding of the systemic responses to ER stress in rice seeds. PMID:26395408

  4. Supramolecular architecture of endoplasmic reticulum-plasma membrane contact sites.

    PubMed

    Fernández-Busnadiego, Rubén

    2016-04-15

    The endoplasmic reticulum (ER) forms membrane contact sites (MCS) with most other cellular organelles and the plasma membrane (PM). These ER-PM MCS, where the membranes of the ER and PM are closely apposed, were discovered in the early days of electron microscopy (EM), but only recently are we starting to understand their functional and structural diversity. ER-PM MCS are nowadays known to mediate excitation-contraction coupling (ECC) in striated muscle cells and to play crucial roles in Ca(2+)and lipid homoeostasis in all metazoan cells. A common feature across ER-PM MCS specialized in different functions is the preponderance of cooperative phenomena that result in the formation of large supramolecular assemblies. Therefore, characterizing the supramolecular architecture of ER-PM MCS is critical to understand their mechanisms of function. Cryo-electron tomography (cryo-ET) is a powerful EM technique uniquely positioned to address this issue, as it allows 3D imaging of fully hydrated, unstained cellular structures at molecular resolution. In this review I summarize our current structural knowledge on the molecular organization of ER-PM MCS and its functional implications, with special emphasis on the emerging contributions of cryo-ET. PMID:27068966

  5. Endoplasmic reticulum localization and activity of maize auxin biosynthetic enzymes.

    PubMed

    Kriechbaumer, Verena; Seo, Hyesu; Park, Woong June; Hawes, Chris

    2015-09-01

    Auxin is a major growth hormone in plants and the first plant hormone to be discovered and studied. Active research over >60 years has shed light on many of the molecular mechanisms of its action including transport, perception, signal transduction, and a variety of biosynthetic pathways in various species, tissues, and developmental stages. The complexity and redundancy of the auxin biosynthetic network and enzymes involved raises the question of how such a system, producing such a potent agent as auxin, can be appropriately controlled at all. Here it is shown that maize auxin biosynthesis takes place in microsomal as well as cytosolic cellular fractions from maize seedlings. Most interestingly, a set of enzymes shown to be involved in auxin biosynthesis via their activity and/or mutant phenotypes and catalysing adjacent steps in YUCCA-dependent biosynthesis are localized to the endoplasmic reticulum (ER). Positioning of auxin biosynthetic enzymes at the ER could be necessary to bring auxin biosynthesis in closer proximity to ER-localized factors for transport, conjugation, and signalling, and allow for an additional level of regulation by subcellular compartmentation of auxin action. Furthermore, it might provide a link to ethylene action and be a factor in hormonal cross-talk as all five ethylene receptors are ER localized. PMID:26139824

  6. Aging induced endoplasmic reticulum stress alters sleep and sleep homeostasis.

    PubMed

    Brown, Marishka K; Chan, May T; Zimmerman, John E; Pack, Allan I; Jackson, Nicholas E; Naidoo, Nirinjini

    2014-06-01

    Alterations in the quality, quantity, and architecture of baseline and recovery sleep have been shown to occur during aging. Sleep deprivation induces endoplasmic reticular (ER) stress and upregulates a protective signaling pathway termed the unfolded protein response. The effectiveness of the adaptive unfolded protein response is diminished by age. Previously, we showed that endogenous chaperone levels altered recovery sleep in Drosophila melanogaster. We now report that acute administration of the chemical chaperone sodium 4-phenylbutyrate (PBA) reduces ER stress and ameliorates age-associated sleep changes in Drosophila. PBA consolidates both baseline and recovery sleep in aging flies. The behavioral modifications of PBA are linked to its suppression of ER stress. PBA decreased splicing of X-box binding protein 1 and upregulation of phosphorylated elongation initiation factor 2 α, in flies that were subjected to sleep deprivation. We also demonstrate that directly activating ER stress in young flies fragments baseline sleep and alters recovery sleep. Alleviating prolonged or sustained ER stress during aging contributes to sleep consolidation and improves recovery sleep or sleep debt discharge. PMID:24444805

  7. Protein Bodies in Leaves Exchange Contents through the Endoplasmic Reticulum

    PubMed Central

    Saberianfar, Reza; Sattarzadeh, Amirali; Joensuu, Jussi J.; Kohalmi, Susanne E.; Menassa, Rima

    2016-01-01

    Protein bodies (PBs) are organelles found in seeds whose main function is the storage of proteins that are used during germination for sustaining growth. PBs can also be induced to form in leaves when foreign proteins are produced at high levels in the endoplasmic reticulum (ER) and when fused to one of three tags: Zera®, elastin-like polypeptides (ELP), or hydrophobin-I (HFBI). In this study, we investigate the differences between ELP, HFBI and Zera PB formation, packing, and communication. Our results confirm the ER origin of all three fusion-tag-induced PBs. We show that secretory pathway proteins can be sequestered into all types of PBs but with different patterns, and that different fusion tags can target a specific protein to different PBs. Zera PBs are mobile and dependent on actomyosin motility similar to ELP and HFBI PBs. We show in vivo trafficking of proteins between PBs using GFP photoconversion. We also show that protein trafficking between ELP or HFBI PBs is faster and proteins travel further when compared to Zera PBs. Our results indicate that fusion-tag-induced PBs do not represent terminally stored cytosolic organelles, but that they form in, and remain part of the ER, and dynamically communicate with each other via the ER. We hypothesize that the previously documented PB mobility along the actin cytoskeleton is associated with ER movement rather than independent streaming of detached organelles. PMID:27242885

  8. Heme oxygenase-1 comes back to endoplasmic reticulum

    SciTech Connect

    Kim, Hong Pyo; Pae, Hyun-Ock; Back, Sung Hun; Chung, Su Wol; Woo, Je Moon; Son, Yong; Chung, Hun-Taeg

    2011-01-07

    Research highlights: {yields} Although multiple compartmentalization of HO-1 has been documented, the functional implication of this enzyme at these subcellular organelles is only partially elucidated. {yields} HO-1 expression at ER is induced by a diverse set of conditions that cause ER stressors. {yields} CO may induce HO-1 expression in human ECs by activating Nrf2 through PERK phosphorylation in a positive-feedback manner. {yields} ER-residing HO-1 and its cytoprotective activity against ER stress is discussed. -- Abstract: Originally identified as a rate-limiting enzyme for heme catabolism, heme oxygenase-1 (HO-1) has expanded its roles in anti-inflammation, anti-apoptosis and anti-proliferation for the last decade. Regulation of protein activity by location is well appreciated. Even though multiple compartmentalization of HO-1 has been documented, the functional implication of this enzyme at these subcellular organelles is only partially elucidated. In this review we discuss the endoplasmic reticulum (ER)-residing HO-1 and its cytoprotective activity against ER stress.

  9. Endoplasmic reticulum stress regulation in hematopoietic stem cells.

    PubMed

    Miharada, Kenichi

    2016-08-01

    Adult hematopoietic stem cells (HSCs) reside in bone marrow and are maintained in a dormant state within a special microenvironment, their so-called "niche". Detaching from the niche induces cell cycle progression, resulting in a reduction of the reconstitution capacity of HSCs. In contrast, fetal liver HSCs actively divide without losing their stem cell potentials. Thus, it has been unclear what types of cellular responses and metabolic changes occur in growing HSCs. We previously discovered that HSCs express relatively low levels of endoplasmic reticulum (ER) chaperone proteins governing protein folding, making HSCs vulnerable to an elevation of stress signals caused by accumulation of un-/misfolded proteins (ER stress) upon in vitro culture. Interestingly, fetal liver HSCs do not show ER stress elevation despite unchanged levels of chaperone proteins. Our latest studies utilizing multiple mouse models revealed that in the fetal liver bile acids as chemical chaperones play a key role supporting the protein folding which results in the suppression of ER stress induction. These findings highlight the importance of ER stress regulations in hematopoiesis. PMID:27599423

  10. Involvement of Endoplasmic Reticulum Stress Response in Orofacial Inflammatory Pain

    PubMed Central

    Yang, Eun Sun; Bae, Jin Young; Kim, Tae Heon; Kim, Yun Sook; Suk, Kyoungho

    2014-01-01

    Endoplasmic reticulum (ER) stress is involved in many neurological diseases and inflammatory responses. Inflammatory mediators induce neuronal damage and trigger the neuropathic or inflammatory pain. But there is very little data on the role of the ER stress response in pain mechanisms. In this study, we explored whether the ER stress response is involved in orofacial inflammatory pain by using a complete Freund's adjuvant (CFA)-injected rat model. The thermal pain hypersensitivity increased significantly after CFA injection. We found that the protein and mRNA levels of ER stress response genes, GRP78/Bip and p-eIF2α, increased significantly in trigeminal ganglion (TG) of CFA-injected rats compared to control animals. In immunofluorescence analysis, a significant increase of GRP78 and p-eIF2α immunopositive neurons was observed in CFA-injected TG compared to control TG. When we administered an ER stress modulator, salubrinal, CFA-induced thermal pain hypersensitivity was temporally reduced. Thus, our study suggests that ER stress responses in TG neurons contribute to CFA-induced inflammatory pain, and may comprise an important molecular mechanism underlying the orofacial inflammatory pain pathway. PMID:25548537

  11. Role of endoplasmic reticulum stress in drug-induced toxicity.

    PubMed

    Foufelle, Fabienne; Fromenty, Bernard

    2016-02-01

    Drug-induced toxicity is a key issue for public health because some side effects can be severe and life-threatening. These adverse effects can also be a major concern for the pharmaceutical companies since significant toxicity can lead to the interruption of clinical trials, or the withdrawal of the incriminated drugs from the market. Recent studies suggested that endoplasmic reticulum (ER) stress could be an important event involved in drug liability, in addition to other key mechanisms such as mitochondrial dysfunction and oxidative stress. Indeed, drug-induced ER stress could lead to several deleterious effects within cells and tissues including accumulation of lipids, cell death, cytolysis, and inflammation. After recalling important information regarding drug-induced adverse reactions and ER stress in diverse pathophysiological situations, this review summarizes the main data pertaining to drug-induced ER stress and its potential involvement in different adverse effects. Drugs presented in this review are for instance acetaminophen (APAP), arsenic trioxide and other anticancer drugs, diclofenac, and different antiretroviral compounds. We also included data on tunicamycin (an antibiotic not used in human medicine because of its toxicity) and thapsigargin (a toxic compound of the Mediterranean plant Thapsia garganica) since both molecules are commonly used as prototypical toxins to induce ER stress in cellular and animal models. PMID:26977301

  12. LDL–cholesterol transport to the endoplasmic reticulum: current concepts

    PubMed Central

    Pfisterer, Simon G.; Peränen, Johan; Ikonen, Elina

    2016-01-01

    Purpose of review In this article, we summarize the present information related to the export of LDL-derived cholesterol from late endosomes, with a focus on Nieman-Pick disease, type C1 (NPC1) cholesterol delivery toward the endoplasmic reticulum (ER). We review data suggesting that several pathways may operate in parallel, including membrane transport routes and membrane contact sites (MCSs). Recent findings There is increasing appreciation that MCSs provide an important mechanism for intermembrane lipid transfer. In late endosome–ER contacts, three protein bridges involving oxysterol binding protein related protein (ORP)1L-vesicle associated membrane protein-associated protein (VAP), steroidogenic acute regulatory protein (StAR)D3-VAP and ORP5-NPC1 proteins have been reported. How much they contribute to the flux of LDL–cholesterol to the ER is currently open. Studies for lipid transfer via MCSs have been most advanced in Saccharomyces cerevisiae. Recently, a new sterol-binding protein family conserved between yeast and man was identified. Its members localize at MCSs and were named lipid transfer protein anchored at membrane contact sites (Lam) proteins. In yeast, sterol transfer between the ER and the yeast lysosome may be facilitated by a Lam protein. Summary Increasing insights into the role of MCSs in directional sterol delivery between membranes propose that they might provide routes for LDL–cholesterol transfer to the ER. Future work should reveal which specific contacts may operate for this, and how they are controlled by cholesterol homeostatic machineries. PMID:27054443

  13. PERK-opathies: An Endoplasmic Reticulum Stress Mechanism Underlying Neurodegeneration.

    PubMed

    Bell, Michelle C; Meier, Shelby E; Ingram, Alexandria L; Abisambra, Jose F

    2016-01-01

    The unfolded protein response (UPR) plays a vital role in maintaining cell homeostasis as a consequence of endoplasmic reticulum (ER) stress. However, prolonged UPR activity leads to cell death. This time-dependent dual functionality of the UPR represents the adaptive and cytotoxic pathways that result from ER stress. Chronic UPR activation in systemic and neurodegenerative diseases has been identified as an early sign of cellular dyshomeostasis. The Protein Kinase R-like ER Kinase (PERK) pathway is one of three major branches in the UPR, and it is the only one to modulate protein synthesis as an adaptive response. The specific identification of prolonged PERK activity has been correlated with the progression of disorders such as diabetes, Alzheimer's disease, and cancer, suggesting that PERK plays a role in the pathology of these disorders. For the first time, the term "PERK-opathies" is used to group these diseases in which PERK mediates detriment to the cell culminating in chronic disorders. This article reviews the literature documenting links between systemic disorders with the UPR, but with a specific emphasis on the PERK pathway. Then, articles reporting links between the UPR, and more specifically PERK, and neurodegenerative disorders are presented. Finally, a therapeutic perspective is discussed, where PERK interventions could be potential remedies for cellular dysfunction in chronic neurodegenerative disorders. PMID:26679859

  14. STIM Proteins and the Endoplasmic Reticulum-Plasma Membrane Junctions

    PubMed Central

    Carrasco, Silvia; Meyer, Tobias

    2013-01-01

    Eukaryotic organelles can interact with each other through stable junctions where the two membranes are kept in close apposition. The junction that connects the endoplasmic reticulum to the plasma membrane (ER-PM junction) is unique in providing a direct communication link between the ER and the PM. In a recently discovered signaling process, STIM (stromal-interacting molecule) proteins sense a drop in ER Ca2+ levels and directly activate Orai PM Ca2+ channels across the junction space. In an inverse process, a voltage-gated PM Ca2+ channel can directly open ER ryanodine-receptor Ca2+ channels in striated-muscle cells. Although ER-PM junctions were first described 50 years ago, their broad importance in Ca2+ signaling, as well as in the regulation of cholesterol and phosphatidylinositol lipid transfer, has only recently been realized. Here, we discuss research from different fields to provide a broad perspective on the structures and unique roles of ER-PM junctions in controlling signaling and metabolic processes. PMID:21548779

  15. Paclitaxel inhibits selenoprotein S expression and attenuates endoplasmic reticulum stress

    PubMed Central

    QIN, HONG-SHUANG; YU, PEI-PEI; SUN, YING; WANG, DAN-FENG; DENG, XIAO-FEN; BAO, YONG-LI; SONG, JUN; SUN, LU-GUO; SONG, ZHEN-BO; LI, YU-XIN

    2016-01-01

    The primary effect of the endoplasmic reticulum (ER) stress response or unfolded protein response (UPR) is to reduce the load of unfolded protein and promote survival. However, prolonged and severe ER stress leads to tissue injury and serious diseases. Thus, it is important to identify drugs that can attenuate ER stress for the treatment of diseases. Natural products continue to provide lead compounds for drug discovery and front-line pharmacotherapy for people worldwide. Previous studies have indicated that selenoprotein S (SelS) is a sensitive and ideal maker of ER stress. In the present study, a firefly luciferase reporter driven by the SelS gene promoter was used to screen for natural compounds capable of attenuating ER stress. From this, paclitaxel (PTX) was identified to efficiently inhibit the promoter activity of the SelS gene, and further results revealed that PTX significantly inhibited the tunicamycin-induced upregulation of SelS at the mRNA and protein levels in HepG2 and HEK293T cells. In addition, PTX was able to efficiently inhibit the expression of the ER stress marker, glucose-regulated protein 78, in ER stress, indicating that PTX may reverse ER stress. Taken together, these results suggest that PTX is able to inhibit SelS expression during ER stress and attenuate ER stress. PMID:27109260

  16. Coordination of Endoplasmic Reticulum (ER) Signaling During Maize Seed Development

    SciTech Connect

    Boston, Rebecca S.

    2010-11-20

    Seed storage reserves represent one of the most important sources of renewable fixed carbon and nitrogen found in nature. Seeds are well-adapted for diverting metabolic resources to synthesize storage proteins as well as enzymes and structural proteins needed for their transport and packaging into membrane bound storage protein bodies. Our underlying hypothesis is that the endoplasmic reticulum (ER) stress response provides the critical cellular control of metabolic flux required for optimal accumulation of storage reserves in seeds. This highly conserved response is a cellular mechanism to monitor the protein folding environment of the ER and restore homeostasis in the presence of unfolded or misfolded proteins. In seeds, deposition of storage proteins in protein bodies is a highly specialized process that takes place even in the presence of mutant proteins that no longer fold and package properly. The capacity of the ER to deposit these aberrant proteins in protein bodies during a period that extends several weeks provides an excellent model for deconvoluting the ER stress response of plants. We have focused in this project on the means by which the ER senses and responds to functional perturbations and the underlying intracellular communication that occurs among biosynthetic, trafficking and degradative pathways for proteins during seed development.

  17. Terasaki Ramps in the Endoplasmic Reticulum: Structure, Function and Formation

    NASA Astrophysics Data System (ADS)

    Huber, Greg; Guven, Jemal; Valencia, Dulce-Maria

    2015-03-01

    The endoplasmic reticulum (ER) has long been considered an exceedingly important and complex cellular organelle in eukaryotes (like you). It is a membrane structure, part folded lamellae, part tubular network, that both envelopes the nucleus and threads its way outward, all the way to the cell's periphery. Despite the elegant mechanics of bilayer membranes offered by the work of Helfrich and Canham, as far as the ER is concerned, theory has mostly sat on the sidelines. However, refined imaging of the ER has recently revealed beautiful and subtle geometrical forms - simple geometries, from the mathematical point of view - which some have called a ``parking garage for ribosomes.'' I'll review the discovery and physics of Terasaki ramps and discuss their relation to cell-biological questions, such as ER and nuclear-membrane re-organization during mitosis. Rather than being a footnote in a textbook on differential geometry, these structures suggest answers to a number of the ER's structure-function problems.

  18. Autophagy is activated for cell survival after endoplasmic reticulum stress.

    PubMed

    Ogata, Maiko; Hino, Shin-ichiro; Saito, Atsushi; Morikawa, Keisuke; Kondo, Shinichi; Kanemoto, Soshi; Murakami, Tomohiko; Taniguchi, Manabu; Tanii, Ichiro; Yoshinaga, Kazuya; Shiosaka, Sadao; Hammarback, James A; Urano, Fumihiko; Imaizumi, Kazunori

    2006-12-01

    Eukaryotic cells deal with accumulation of unfolded proteins in the endoplasmic reticulum (ER) by the unfolded protein response, involving the induction of molecular chaperones, translational attenuation, and ER-associated degradation, to prevent cell death. Here, we found that the autophagy system is activated as a novel signaling pathway in response to ER stress. Treatment of SK-N-SH neuroblastoma cells with ER stressors markedly induced the formation of autophagosomes, which were recognized at the ultrastructural level. The formation of green fluorescent protein (GFP)-LC3-labeled structures (GFP-LC3 "dots"), representing autophagosomes, was extensively induced in cells exposed to ER stress with conversion from LC3-I to LC3-II. In IRE1-deficient cells or cells treated with c-Jun N-terminal kinase (JNK) inhibitor, the autophagy induced by ER stress was inhibited, indicating that the IRE1-JNK pathway is required for autophagy activation after ER stress. In contrast, PERK-deficient cells and ATF6 knockdown cells showed that autophagy was induced after ER stress in a manner similar to the wild-type cells. Disturbance of autophagy rendered cells vulnerable to ER stress, suggesting that autophagy plays important roles in cell survival after ER stress. PMID:17030611

  19. Autophagy Is Activated for Cell Survival after Endoplasmic Reticulum Stress▿

    PubMed Central

    Ogata, Maiko; Hino, Shin-ichiro; Saito, Atsushi; Morikawa, Keisuke; Kondo, Shinichi; Kanemoto, Soshi; Murakami, Tomohiko; Taniguchi, Manabu; Tanii, Ichiro; Yoshinaga, Kazuya; Shiosaka, Sadao; Hammarback, James A.; Urano, Fumihiko; Imaizumi, Kazunori

    2006-01-01

    Eukaryotic cells deal with accumulation of unfolded proteins in the endoplasmic reticulum (ER) by the unfolded protein response, involving the induction of molecular chaperones, translational attenuation, and ER-associated degradation, to prevent cell death. Here, we found that the autophagy system is activated as a novel signaling pathway in response to ER stress. Treatment of SK-N-SH neuroblastoma cells with ER stressors markedly induced the formation of autophagosomes, which were recognized at the ultrastructural level. The formation of green fluorescent protein (GFP)-LC3-labeled structures (GFP-LC3 “dots”), representing autophagosomes, was extensively induced in cells exposed to ER stress with conversion from LC3-I to LC3-II. In IRE1-deficient cells or cells treated with c-Jun N-terminal kinase (JNK) inhibitor, the autophagy induced by ER stress was inhibited, indicating that the IRE1-JNK pathway is required for autophagy activation after ER stress. In contrast, PERK-deficient cells and ATF6 knockdown cells showed that autophagy was induced after ER stress in a manner similar to the wild-type cells. Disturbance of autophagy rendered cells vulnerable to ER stress, suggesting that autophagy plays important roles in cell survival after ER stress. PMID:17030611

  20. Proteomic analysis of endoplasmic reticulum stress responses in rice seeds

    PubMed Central

    Qian, Dandan; Tian, Lihong; Qu, Leqing

    2015-01-01

    The defects in storage proteins secretion in the endosperm of transgenic rice seeds often leads to endoplasmic reticulum (ER) stress, which produces floury and shrunken seeds, but the mechanism of this response remains unclear. We used an iTRAQ-based proteomics analysis of ER-stressed rice seeds due to the endosperm-specific suppression of OsSar1 to identify changes in the protein levels in response to ER stress. ER stress changed the expression of 405 proteins in rice seed by >2.0- fold compared with the wild-type control. Of these proteins, 140 were upregulated and 265 were downregulated. The upregulated proteins were mainly involved in protein modification, transport and degradation, and the downregulated proteins were mainly involved in metabolism and stress/defense responses. A KOBAS analysis revealed that protein-processing in the ER and degradation-related proteasome were the predominant upregulated pathways in the rice endosperm in response to ER stress. Trans-Golgi protein transport was also involved in the ER stress response. Combined with bioinformatic and molecular biology analyses, our proteomic data will facilitate our understanding of the systemic responses to ER stress in rice seeds. PMID:26395408

  1. Periostin promotes secretion of fibronectin from the endoplasmic reticulum.

    PubMed

    Kii, Isao; Nishiyama, Takashi; Kudo, Akira

    2016-02-19

    Extracellular matrix (ECM) proteins are synthesized in the endoplasmic reticulum (ER), transported to the extracellular milieu through the secretory pathway, and assembled into an extracellular architecture. A previous study of ours showed that periostin, a secretory protein, interacts with fibronectin and is involved in ECM remodeling. Here we show that periostin played a role in fibronectin secretion from the ER. Co-immunoprecipitation and in situ proximity ligation assays revealed an interaction between periostin and fibronectin in the ER. Although accumulation of fibronectin was detected in the ER of fibroblastic C3H10T1/2 cells, forced expression of periostin in those cells decreased the accumulation of fibronectin in the ER, suggesting that periostin promoted the secretion of fibronectin. A substitution mutant of tryptophan at the position 65 to alanine in the EMI domain of periostin, which caused periostin to lose its ability to interact with fibronectin, did not decrease the accumulation. Furthermore, targeted disruption of periostin in mice caused the non-fibrillar and ectopic deposition of fibronectin in the periodontal ligament. Thus, these results demonstrate a subcellular role of periostin in promotion of fibronectin secretion from the ER. PMID:26820539

  2. Abundance coefficients, a new method for measuring microorganism relative abundance

    USGS Publications Warehouse

    Forester, R.M.

    1977-01-01

    A new method of measuring the relative abundance of microorganisms by using a set of interrelated coefficients, termed 'abundance coefficients' or 'AC', is proposed. These coefficients provide a means of recording abundance for geometric density categories, and each density measurement represents an approximation of the Poisson parameter ??t. The AC is the natural logarithm of a 'characteristic value,' which is a particular number for each geometric density category. The 'characteristic values' are based upon a probabilistic error statement derived from the Poisson formula, and they present evidence for separation of the geometric category boundaries by e = 2.71828. The proposed AC provide a means for recording species abundance in a manner suitable for arithmetic manipulation, for population structure studies, and for the determination of practical limits for defining the presence or absence of a species. Further, these coefficients provide for both intrasample and intersample abundance comparisons. ?? 1977 Plenum Publishing Corporation.

  3. Rough Evaluation Structure: Application of Rough Set Theory to Generate Simple Rules for Inconsistent Preference Relation

    NASA Astrophysics Data System (ADS)

    Gehrmann, Andreas; Nagai, Yoshimitsu; Yoshida, Osamu; Ishizu, Syohei

    Since management decision-making becomes complex and preferences of the decision-maker frequently becomes inconsistent, multi-attribute decision-making problems were studied. To represent inconsistent preference relation, the concept of evaluation structure was introduced. We can generate simple rules to represent inconsistent preference relation by the evaluation structures. Further rough set theory for the preference relation was studied and the concept of approximation was introduced. One of our main aims of this paper is to introduce a concept of rough evaluation structure for representing inconsistent preference relation. We apply rough set theory to the evaluation structure, and develop a method for generating simple rules for inconsistent preference relations. In this paper, we introduce concepts of totally ordered information system, similarity class of preference relation, upper and lower approximation of preference relations. We also show the properties of rough evaluation structure and provide a simple example. As an application of rough evaluation structure, we analyze questionnaire survey of customer preferences about audio players.

  4. Effect of surface morphology on drag and roughness sublayer in flows over regular roughness elements

    NASA Astrophysics Data System (ADS)

    Placidi, Marco; Ganapathisubramani, Bharathram

    2014-11-01

    The effects of systematically varied roughness morphology on bulk drag and on the spatial structure of turbulent boundary layers are examined by performing a series of wind tunnel experiments. In this study, rough surfaces consisting of regularly and uniformly distributed LEGO™ bricks are employed. Twelve different patterns are adopted in order to methodically examine the individual effects of frontal solidity (λF, frontal area of the roughness elements per unit wall-parallel area) and plan solidity (λP, plan area of roughness elements per unit wall-parallel area), on both the bulk drag and the turbulence structure. A floating element friction balance based on Krogstad & Efros (2010) was designed and manufactured to measure the drag generated by the different surfaces. In parallel, high resolution planar and stereoscopic Particle Image Velocimetry (PIV) was applied to investigate the flow features. This talk will focus on the effects of each solidity parameter on the bulk drag and attempt to relate the observed trends to the flow structures in the roughness sublayer. Currently at City University London.

  5. Roughness characterization of the galling of metals

    NASA Astrophysics Data System (ADS)

    Hubert, C.; Marteau, J.; Deltombe, R.; Chen, Y. M.; Bigerelle, M.

    2014-09-01

    Several kinds of tests exist to characterize the galling of metals, such as that specified in ASTM Standard G98. While the testing procedure is accurate and robust, the analysis of the specimen's surfaces (area=1.2 cm) for the determination of the critical pressure of galling remains subject to operator judgment. Based on the surface's topography analyses, we propose a methodology to express the probability of galling according to the macroscopic pressure load. After performing galling tests on 304L stainless steel, a two-step segmentation of the S q parameter (root mean square of surface amplitude) computed from local roughness maps (100 μ m× 100 μ m) enables us to distinguish two tribological processes. The first step represents the abrasive wear (erosion) and the second one the adhesive wear (galling). The total areas of both regions are highly relevant to quantify galling and erosion processes. Then, a one-parameter phenomenological model is proposed to objectively determine the evolution of non-galled relative area A e versus the pressure load P, with high accuracy ({{A}e}=100/(1+a{{P}2}) with a={{0.54}+/- 0.07}× {{10}-3} M P{{a}-2} and with {{R}2}=0.98). From this model, the critical pressure of galling is found to be equal to 43MPa. The {{S}5 V} roughness parameter (the five deepest valleys in the galled region's surface) is the most relevant roughness parameter for the quantification of damages in the ‘galling region’. The significant valleys’ depths increase from 10 μm-250 μm when the pressure increases from 11-350 MPa, according to a power law ({{S}5 V}=4.2{{P}0.75}, with {{R}2}=0.93).

  6. Parametric Flow Visualization of Dynamic Roughness Effects

    NASA Astrophysics Data System (ADS)

    Jakkali, Vinay

    The ever growing need in the aircraft industry to enhance the performance of a flight vehicle has led to active areas of research which focus on the control of the local boundary layer by both passive and active methods. An effective flow control mechanism can improve the performance of a flight vehicle in various ways, one of which is eliminating boundary layer separation. To be effective the mechanism not only needs to control the boundary layer as desired, but also use less energy than the resulting energy savings. In this study, the effectiveness of an active flow control technique known as dynamic roughness (DR) has been explored to eliminate the laminar separation bubble near the leading edge and also to eliminate the stall on a NACA 0012 airfoil wing. As opposed to static roughness, dynamic roughness utilizes small time-dependent deforming elements or humps with displacement amplitudes that are on the order of the local boundary layer height to energize the local boundary layer. DR is primarily characterized by the maximum amplitude and operating frequency. A flow visualization study was conducted on a 2D NACA 0012 airfoil model at different angles of attack, and also varying the Reynolds number and DR actuation frequency with fixed maximum DR amplitude. The experimental results from this study suggests that DR is an effective method of reattaching a totally separated boundary layer. In addition, this study discusses some of the fundamental physics behind the working of DR and proposes some non-dimensional terms that may help to explain the driving force behind the mechanism.

  7. Quantifying surface roughness over debris covered ice

    NASA Astrophysics Data System (ADS)

    Quincey, Duncan; Rounce, David; Ross, Andrew

    2016-04-01

    Aerodynamic roughness length (z0) remains a major uncertainty when determining turbulent heat fluxes over glacier surfaces, and can vary by an order of magnitude even within a small area and through the melt season. Defining z0 over debris-covered ice is particularly complex, because the surface may comprise clasts of greatly varying size, and the broader-scale surface relief can be similarly heterogeneous. Several recent studies have used Structure from Motion to data model debris-covered surfaces at the centimetric scale and calculate z0 based on measurements of surface microtopography. However, few have validated these measurements with independent vertical wind profile measurements, or considered how the measurements vary over a range of different surface types or scales of analysis. Here, we present the results of a field investigation conducted on the debris covered Khumbu Glacier during the post-monsoon season of 2015. We focus on two sites. The first is characterised by gravels and cobbles supported by a fine sandy matrix. The second comprises cobbles and boulders separated by voids. Vertical profiles of wind speed measured over both sites enable us to derive measurements of aerodynamic roughness that are similar in magnitude, with z0 at the second site exceeding that at the first by < 1 cm. During our observation period, snow covered the second site for three days, but the impact on z0 is small, implying that roughness is predominantly determined by major rock size obstacles rather than the general form of the surface. To complement these aerodynamic measurements we also conducted a Structure from Motion survey across each patch and calculated z0 using microtopographic methods published in a range of recent studies. We compare the outputs of each of these algorithms with each other and with the aerodynamic measurements, assess how they perform over a range of scales, and evaluate the validity of using microtopographic methods where aerodynamic measurements

  8. Effective field model of roughness in magnetic nano-structures

    SciTech Connect

    Lepadatu, Serban

    2015-12-28

    An effective field model is introduced here within the micromagnetics formulation, to study roughness in magnetic structures, by considering sub-exchange length roughness levels as a perturbation on a smooth structure. This allows the roughness contribution to be separated, which is found to give rise to an effective configurational anisotropy for both edge and surface roughness, and accurately model its effects with fine control over the roughness depth without the explicit need to refine the computational cell size to accommodate the roughness profile. The model is validated by comparisons with directly roughened structures for a series of magnetization switching and domain wall velocity simulations and found to be in excellent agreement for roughness levels up to the exchange length. The model is further applied to vortex domain wall velocity simulations with surface roughness, which is shown to significantly modify domain wall movement and result in dynamic pinning and stochastic creep effects.

  9. 7 CFR 51.776 - Slightly rough texture.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... Definitions § 51.776 Slightly rough texture. Slightly rough texture means that the skin may be slightly thick but not excessively thick, materially ridged or grooved. “Slightly thick” means that the...

  10. 7 CFR 51.776 - Slightly rough texture.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... Definitions § 51.776 Slightly rough texture. Slightly rough texture means that the skin may be slightly thick but not excessively thick, materially ridged or grooved. “Slightly thick” means that the...

  11. Correlation between roughness and porosity in rocks

    NASA Astrophysics Data System (ADS)

    Rebollo, M. A.; Hogert, E. N.; Albano, J.; Raffo, C. A.; Gaggioli, N. G.

    1996-02-01

    The porosity of rocks is a very important parameter in the determination of the performance of oil wells. Optical methods allow us to study surface roughness and different materials that have surface properties with random characteristics. Therefore, we have extended these applications to porosity analysis. In our method, we have used the speckle produced by the scattered light from a porous rock, illuminated by a laser beam, and found a linear relationship between the decorrelation of the speckle intensity distribution and the porosity magnitude. In this paper we present the results for samples extracted from oil wells in Argentina.

  12. Polarimetric thermal emission from rough surfaces

    NASA Technical Reports Server (NTRS)

    Johnson, J. T.; Kong, J. A.; Shin, R. T.; Staelin, D. H.; Yueh, S. H.; Nghiem, S. V.; Kwok, R.; Oneill, K.; Lohanick, A.

    1993-01-01

    Recent theoretical works have suggested the potential of passive polarimetry in the remote sensing of geophysical media. It was shown that the third Stokes parameter U of the thermal emission may become larger for azimuthally asymmetric fields of observation. In order to investigate the potential applicability of passive polarimetry to the remote sensing of ocean surface, measurements of the polarimetric thermal emission from a sinusoidal water surface and a numerical study of the polarimetric thermal emission from randomly rough ocean surfaces were performed. Measurements of sinusoidal water surface thermal emission were performed using a sinusoidal water surface which was created by placing a thin sheet of fiberglass with a sinusoidal profile in two dimensions extended infinitely in the third dimension onto a water surface. The theory of thermal emission from a 'two-layer' periodic surface is derived and the exact solution is performed using both the extended boundary condition method (EBC) and the method of moments (MOM). The theoretical predictions are found to be in good agreement with the experimental results once the effects of the radiometer antenna pattern are included and the contribution of background noise to the measurements is modeled. The experimental results show that the U parameter indicates the direction of periodicity of the water surface and can approach values of up to 30 K for the surface observed. Next, a numerical study of polarimetric thermal emission from randomly rough surfaces was performed. A Monte Carlo technique utilizing an exact method for calculating thermal emission was chosen for the study to avoid any of the limitations of the commonly used approximate methods in rough surface scattering. In this Monte Carlo technique, a set of finite rough surface profiles in two dimensions with desired statistics was generated and extended periodically. The polarimetric thermal emission from each surface of the set was then calculated using

  13. Mold Cavity Roughness vs. Flow of Polymer

    NASA Astrophysics Data System (ADS)

    Stanek, Michal; Manas, Miroslav; Manas, David

    2009-07-01

    Injection molding represents such a way of polymer processing that requires injection of polymer melt into the mold cavity with very high injection rate. The fluidity of polymers is affected by many parameters (mold design, melt temperature, injection rate and pressure). The main objective of this paper is the study of influence of surface roughness of mold cavity of the polymer melts flow. Evaluation of set of data obtained by experiments where the testing conditions were widely changed shows that quality of cavity surface affects on the length of flow.

  14. MOLA Global roughness map of Mars

    NASA Technical Reports Server (NTRS)

    2000-01-01

    The median of slopes in 35-km windows indicate the typical roughness on 300-meter baselines. The rougher nature of the heavily cratered terrain in the Southern Hemisphere is apparent, as well as that of Valles Marineris (12S, 289E) canyon walls and the Olympus Mons (18N, 227E) aureole deposits. The Northern Lowlands are smooth, especially Amazonis Planitia (16N, 202E), a region to the west of Olympus Mons, were typical median slopes on these baselines are often smaller than 0.1 degree. A shaded relief map of the topography is overlaid is monochrome.

  15. Investigations of Titan's topography and surface roughness

    NASA Astrophysics Data System (ADS)

    Sharma, Priyanka

    Saturn's moon, Titan is a geomorphologically active planetary object, and its surface is influenced by multiple processes like impact cratering, fluvial and aeolian erosion, lacustrine processes, tectonics, cryovolcanism and mantling. Disentangling the processes that compete to shape Titan's landscape is difficult in the absence of global topography data. In this thesis, I utilize techniques in topographic statistics, fractal theory, study of terrestrial analogs and landscape evolution modeling to characterize Titan's topography and surface roughness and investigate the relative roles of surface processes in sculpting its landscape. I mapped the shorelines of 290 North Polar Titanian lakes using the Cassini Synthetic Aperture Radar dataset. The fractal dimensions of the shorelines were calculated via the divider/ruler method and box-counting method, at length scales of (1--10) km and found to average 1.27 and 1.32, respectively. The inferred power-spectral exponent of Titan's topography was found to be ≤ 2, which is lower than the values obtained from the global topography of the Earth or Venus. In order to interpret fractal dimensions of Titan's shorelines in terms of the surficial processes at work, I repeated a similar statistical analysis with 114 terrestrial analogous lakes formed by different processes, using C-band radar backscatter data from the Shuttle Radar Topography Mission (SRTM). I found different lake generation mechanisms on Earth produce 'statistically different' shorelines; however, no specific set of processes could be identified for forming Titanian lake basins. Using the Cassini RADAR altimetry data, I investigated Titan's global surface roughness and calculated median absolute slopes, average relief and Hurst exponent (H) for the surface of Titan. I detected a clear trend with latitude in these roughness parameters. Equatorial regions had the smallest slopes, lowest values of H and smallest intra-footprint relief, compared to the mid

  16. Impact of Endothelium Roughness on Blood Flow

    PubMed Central

    Park, Sangwoo; Intaglietta, Marcos; Tartakovsky, Daniel M.

    2012-01-01

    Cell free layer (CFL), a plasma layer bounded by the red blood cell (RBC) core and the endothelium, plays an important physiological role. Its width affects the effective blood viscosity as well as the scavenging and production of nitric oxide (NO). Measurements of the CFL and its spatio-temporal variability are highly uncertain, exhibiting random fluctuations. Yet traditional models of blood flow and NO scavenging treat the CFL’s bounding surfaces as deterministic and smooth. We investigate the effects of the endothelium roughness and uncertain (random) spatial variability on blood flow and estimates of effective blood viscosity. PMID:22300799

  17. Robust surface roughness indices and morphological interpretation

    NASA Astrophysics Data System (ADS)

    Trevisani, Sebastiano; Rocca, Michele

    2016-04-01

    Geostatistical-based image/surface texture indices based on variogram (Atkison and Lewis, 2000; Herzfeld and Higginson, 1996; Trevisani et al., 2012) and on its robust variant MAD (median absolute differences, Trevisani and Rocca, 2015) offer powerful tools for the analysis and interpretation of surface morphology (potentially not limited to solid earth). In particular, the proposed robust index (Trevisani and Rocca, 2015) with its implementation based on local kernels permits the derivation of a wide set of robust and customizable geomorphometric indices capable to outline specific aspects of surface texture. The stability of MAD in presence of signal noise and abrupt changes in spatial variability is well suited for the analysis of high-resolution digital terrain models. Moreover, the implementation of MAD by means of a pixel-centered perspective based on local kernels, with some analogies to the local binary pattern approach (Lucieer and Stein, 2005; Ojala et al., 2002), permits to create custom roughness indices capable to outline different aspects of surface roughness (Grohmann et al., 2011; Smith, 2015). In the proposed poster, some potentialities of the new indices in the context of geomorphometry and landscape analysis will be presented. At same time, challenges and future developments related to the proposed indices will be outlined. Atkinson, P.M., Lewis, P., 2000. Geostatistical classification for remote sensing: an introduction. Computers & Geosciences 26, 361-371. Grohmann, C.H., Smith, M.J., Riccomini, C., 2011. Multiscale Analysis of Topographic Surface Roughness in the Midland Valley, Scotland. IEEE Transactions on Geoscience and Remote Sensing 49, 1220-1213. Herzfeld, U.C., Higginson, C.A., 1996. Automated geostatistical seafloor classification - Principles, parameters, feature vectors, and discrimination criteria. Computers and Geosciences, 22 (1), pp. 35-52. Lucieer, A., Stein, A., 2005. Texture-based landform segmentation of LiDAR imagery

  18. Interplay Between the Oxidoreductase PDIA6 and microRNA-322 Controls the Response to Disrupted Endoplasmic Reticulum Calcium Homeostasis

    PubMed Central

    Groenendyk, Jody; Peng, Zhenling; Dudek, Elzbieta; Fan, Xiao; Mizianty, Marcin J.; Dufey, Estefanie; Urra, Hery; Sepulveda, Denisse; Rojas-Rivera, Diego; Lim, Yunki; Kim, Do Han; Baretta, Kayla; Srikanth, Sonal; Gwack, Yousang; Ahnn, Joohong; Kaufman, Randal J.; Lee, Sun-Kyung; Hetz, Claudio; Kurgan, Lukasz; Michalak, Marek

    2016-01-01

    The disruption of the energy or nutrient balance triggers endoplasmic reticulum (ER) stress, a process that mobilizes various strategies, collectively called the unfolded protein response (UPR), which reestablish homeostasis of the ER and cell. Activation of the UPR stress sensor IRE1α (inositol-requiring enzyme 1α) stimulates its endoribonuclease activity, leading to the generation of the mRNA encoding the transcription factor XBP1 (X-box binding protein 1), which regulates the transcription of genes encoding factors involved in controlling the quality and folding of proteins. We found that the activity of IRE1α was regulated by the ER oxidoreductase PDIA6 (protein disulfide isomerase A6) and the microRNA miR-322 in response to disruption of ER Ca2+ homeostasis. PDIA6 interacted with IRE1α and enhanced IRE1α activity as monitored by phosphorylation of IRE1α and XBP1 mRNA splicing, but PDIA6 did not substantially affect the activity of other pathways that mediate responses to ER stress. ER Ca2+ depletion and activation of store operated Ca2+ entry reduced the abundance of the microRNA miR-322, which increased PDIA6 mRNA stability and consequently IRE1α activity during the ER stress response. In vivo experiments with mice and worms showed that the induction of ER stress correlated with decreased miR-322 abundance, increased PDIA6 mRNA abundance, or both. Together these findings demonstrated that ER Ca2+, PDIA6, IRE1α, and miR-322 function in a dynamic feedback loop modulating the UPR under conditions of disrupted ER Ca2+ homeostasis. PMID:24917591

  19. Characterization of the ribosomal binding site in rat liver rough microsomes: ribophorins I and II, two integral membrane proteins related to ribosome binding.

    PubMed

    Kreibich, G; Czakó-Graham, M; Grebenau, R; Mok, W; Rodriguez-Boulan, E; Sabatini, D D

    1978-01-01

    Rat liver rough endoplasmic reticulum membranes (ER) contain two characteristic transmembrane glycoproteins which have been designated ribophorins I and II and are absent from smooth ER membranes. These proteins (MW 65,000 and 63,000 respectively) are related to the binding sites for ribosomes, as suggested by the following findings: i) The ribophorin content of the rough ER membranes corresponds stoichiometrically to the number of bound ribosomes; ii) ribophorins are quantitatively recovered with the bound polysomes after most other ER membrane proteins are dissolved with the nonionic detergent Kyro EOB; iii) in intact rough microsomes ribophorins can be cross-linked chemically to the ribosomes and therefore are in close proximity to them. Treatment of rough microsomes with a low Triton-X-100 concentration leads to the lateral displacement of ribosomes on the microsomal surface and to the formation of aggregates of bound ribosomes in areas of membranes which frequently invaginate into the microsomal lumen. Subfractionation of Triton-treated microsomes containing invaginations led to the recovery of smooth and "rough-inverted" vesicles. Ribophorins were present only in the latter fraction, indicating that both proteins are displaced together with the ribosomes when these aggregate without detaching. Measurements of the ribosome-binding capacity of rough and smooth microsomal membranes reconstituted after solubilization with detergents suggest that ribophorins are necessary for in vitro ribosome binding. Ribophorin-like proteins were found in rough microsomes obtained from secretory tissues of several animal species. The two proteins present in rat lacrimal gland microsomes have the same mobility as hepatocyte ribophorins and cross-react with antisera against them. PMID:723266

  20. Speckle pattern texture analysis method to measure surface roughness

    NASA Astrophysics Data System (ADS)

    Kuznetsov, I.; Sadovoy, A.; Doronin, A.; Meglinski, I.

    2013-02-01

    Speckle pattern texture analysis method is applied to measure surface roughness of human skin. The method is based on analyzing of a gray level co-occurrence matrix occurred from a speckle image of a rough surface. Paper with different surface roughness is used as a skin phantom. The roughness is controlled by profilometry measurements. The developed methodology could find wide application in dermatology and tissue diagnostics.

  1. Application of rough set for medical images data mining

    NASA Astrophysics Data System (ADS)

    Wang, Shuyan; Wang, Chunmei; Chen, Yan

    2010-08-01

    To study the application of Rough set algorithm for diagnosis breast cancer, attribute reduction strategies of rough set are applied to the data mining of the mammography classification, proposes a medical images classifier based on association rules. Attribute reduction strategies of rough set for medical image data mining are realized. The experiment results are given. The experimental results show that the system performs well in accuracy, verified the great potential of rough set in assistant medical treatment.

  2. Erratum: Interstellar Abundance Standards Revisited

    NASA Astrophysics Data System (ADS)

    Sofia, U. J.; Meyer, D. M.

    2001-09-01

    In the Letter ``Interstellar Abundance Standards Revisited'' by U. J. Sofia and D. M. Meyer (ApJ, 554, L221 [2001]), Table 2 and its footnotes contain several typographical errors. The corrected table is shown below. We note that the solar reference standard now implies a positive abundance of nitrogen in halo dust.

  3. 7 CFR 51.1014 - Excessively rough texture.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 2 2013-01-01 2013-01-01 false Excessively rough texture. 51.1014 Section 51.1014 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE (Standards....1014 Excessively rough texture. Excessively rough texture means that the skin is badly ridged or...

  4. 7 CFR 51.1014 - Excessively rough texture.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 2 2014-01-01 2014-01-01 false Excessively rough texture. 51.1014 Section 51.1014 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE (Standards....1014 Excessively rough texture. Excessively rough texture means that the skin is badly ridged or...

  5. 7 CFR 51.1169 - Slightly rough texture.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... rough texture. Slightly rough texture means that the skin is not of smooth texture but is not materially... 7 Agriculture 2 2011-01-01 2011-01-01 false Slightly rough texture. 51.1169 Section 51.1169 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE...

  6. 7 CFR 51.1169 - Slightly rough texture.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... rough texture. Slightly rough texture means that the skin is not of smooth texture but is not materially... 7 Agriculture 2 2010-01-01 2010-01-01 false Slightly rough texture. 51.1169 Section 51.1169 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE...

  7. 7 CFR 51.1169 - Slightly rough texture.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... Definitions § 51.1169 Slightly rough texture. Slightly rough texture means that the skin is not of smooth... 7 Agriculture 2 2014-01-01 2014-01-01 false Slightly rough texture. 51.1169 Section 51.1169 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE...

  8. 7 CFR 51.1169 - Slightly rough texture.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... Definitions § 51.1169 Slightly rough texture. Slightly rough texture means that the skin is not of smooth... 7 Agriculture 2 2013-01-01 2013-01-01 false Slightly rough texture. 51.1169 Section 51.1169 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE...

  9. 7 CFR 51.1169 - Slightly rough texture.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... rough texture. Slightly rough texture means that the skin is not of smooth texture but is not materially... 7 Agriculture 2 2012-01-01 2012-01-01 false Slightly rough texture. 51.1169 Section 51.1169 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE...

  10. 7 CFR 868.201 - Definition of rough rice.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 7 2012-01-01 2012-01-01 false Definition of rough rice. 868.201 Section 868.201... FOR CERTAIN AGRICULTURAL COMMODITIES United States Standards for Rough Rice Terms Defined § 868.201 Definition of rough rice. Rice (Oryza sativa L.) which consists of 50 percent or more of paddy kernels...

  11. 7 CFR 868.201 - Definition of rough rice.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 7 2013-01-01 2013-01-01 false Definition of rough rice. 868.201 Section 868.201... FOR CERTAIN AGRICULTURAL COMMODITIES United States Standards for Rough Rice Terms Defined § 868.201 Definition of rough rice. Rice (Oryza sativa L.) which consists of 50 percent or more of paddy kernels...

  12. 7 CFR 868.201 - Definition of rough rice.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 7 2014-01-01 2014-01-01 false Definition of rough rice. 868.201 Section 868.201... FOR CERTAIN AGRICULTURAL COMMODITIES United States Standards for Rough Rice Terms Defined § 868.201 Definition of rough rice. Rice (Oryza sativa L.) which consists of 50 percent or more of paddy kernels...

  13. 14 CFR 25.1517 - Rough air speed, VRA.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 14 Aeronautics and Space 1 2013-01-01 2013-01-01 false Rough air speed, VRA. 25.1517 Section 25... Limitations § 25.1517 Rough air speed, VRA. A rough air speed, VRA, for use as the recommended turbulence... specified in § 25.335(d); and (3) Is sufficiently less than VMO to ensure that likely speed variation...

  14. Moisture diffusivity of rough rice under infrared radiation drying

    Technology Transfer Automated Retrieval System (TEKTRAN)

    To design efficient infrared (IR) dryers for rough rice, it is important to understand the drying behavior of rough rice under IR heating. The objective of this study was to determine the moisture diffusivity of rough rice under IR heating followed by cooling. The effects of initial moisture content...

  15. 7 CFR 868.201 - Definition of rough rice.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 7 2010-01-01 2010-01-01 false Definition of rough rice. 868.201 Section 868.201... FOR CERTAIN AGRICULTURAL COMMODITIES United States Standards for Rough Rice Terms Defined § 868.201 Definition of rough rice. Rice (Oryza sativa L.) which consists of 50 percent or more of paddy kernels...

  16. 7 CFR 868.201 - Definition of rough rice.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 7 2011-01-01 2011-01-01 false Definition of rough rice. 868.201 Section 868.201... FOR CERTAIN AGRICULTURAL COMMODITIES United States Standards for Rough Rice Terms Defined § 868.201 Definition of rough rice. Rice (Oryza sativa L.) which consists of 50 percent or more of paddy kernels...

  17. 14 CFR 25.1517 - Rough air speed, VRA.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 14 Aeronautics and Space 1 2010-01-01 2010-01-01 false Rough air speed, VRA. 25.1517 Section 25... Limitations § 25.1517 Rough air speed, VRA. A rough air speed, VRA, for use as the recommended turbulence... specified in § 25.335(d); and (3) Is sufficiently less than VMO to ensure that likely speed variation...

  18. 14 CFR 25.1517 - Rough air speed, VRA.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 14 Aeronautics and Space 1 2011-01-01 2011-01-01 false Rough air speed, VRA. 25.1517 Section 25... Limitations § 25.1517 Rough air speed, VRA. A rough air speed, VRA, for use as the recommended turbulence... specified in § 25.335(d); and (3) Is sufficiently less than VMO to ensure that likely speed variation...

  19. Rough viscoelastic sliding contact: Theory and experiments

    NASA Astrophysics Data System (ADS)

    Carbone, G.; Putignano, C.

    2014-03-01

    In this paper, we show how the numerical theory introduced by the authors [Carbone and Putignano, J. Mech. Phys. Solids 61, 1822 (2013), 10.1016/j.jmps.2013.03.005] can be effectively employed to study the contact between viscoelastic rough solids. The huge numerical complexity is successfully faced up by employing the adaptive nonuniform mesh developed by the authors in Putignano et al. [J. Mech. Phys. Solids 60, 973 (2012), 10.1016/j.jmps.2012.01.006]. Results mark the importance of accounting for viscoelastic effects to correctly simulate the sliding rough contact. In detail, attention is, first, paid to evaluate the viscoelastic dissipation, i.e., the viscoelastic friction. Fixed the sliding speed and the normal load, friction is completely determined. Furthermore, since the methodology employed in the work allows to study contact between real materials, a comparison between experimental outcomes and numerical prediction in terms of viscoelastic friction is shown. The good agreement seems to validate—at least partially—the presented methodology. Finally, it is shown that viscoelasticity entails not only the dissipative effects previously outlined, but is also strictly related to the anisotropy of the contact solution. Indeed, a marked anisotropy is present in the contact region, which results stretched in the direction perpendicular to the sliding speed. In the paper, the anisotropy of the deformed surface and of the contact area is investigated and quantified.

  20. How Tongue Size and Roughness Affect Lapping

    NASA Astrophysics Data System (ADS)

    Hubbard, M. J.; Hay, K. M.

    2012-10-01

    The biomechanics of domestic cat lapping (Felis catus) and domestic dog lapping (Canis familiaris) is currently under debate. Lapping mechanics in vertebrates with incomplete cheeks, such as cats and dogs, is a balance of inertia and the force of gravity likely optimized for ingestion and physical necessities. Physiology dictates vertebrate mass, which dictates vertebrate tongue size, which dictates lapping mechanics to achieve optimum liquid ingestion; with either touch lapping, scooping, or a hybrid lapping method. The physics of this optimized system then determines how high a column of liquid can be raised before it collapses due to gravity, and therefore, lapping frequency. Through tongue roughness model variation experiments it was found that pore-scale geometrical roughness does not appear to affect lapping or liquid uptake. Through tongue size model variation experiments it was found that there is a critical tongue radius in the range of 25 mm to 35 mm above which touch lapping is no longer an efficient way to uptake liquid. Vertebrates with incomplete cheeks may use a touch lapping method to ingest water if their tongue radius is less than this critical radius and use an alternative ingestion method if their tongue radius is larger.

  1. Roughness tolerances for Cherenkov telescope mirrors

    NASA Astrophysics Data System (ADS)

    Tayabaly, K.; Spiga, D.; Canestrari, R.; Bonnoli, G.; Lavagna, M.; Pareschi, G.

    2015-09-01

    The Cherenkov Telescope Array (CTA) is a forthcoming international ground-based observatory for very high-energy gamma rays. Its goal is to reach sensitivity five to ten times better than existing Cherenkov telescopes such as VERITAS, H.E.S.S. or MAGIC and extend the range of observation to energies down to few tens of GeV and beyond 100 TeV. To achieve this goal, an array of about 100 telescopes is required, meaning a total reflective surface of several thousands of square meters. Thence, the optimal technology used for CTA mirrors' manufacture should be both low-cost (~1000 euros/m2) and allow high optical performances over the 300-550 nm wavelength range. More exactly, a reflectivity higher than 85% and a PSF (Point Spread Function) diameter smaller than 1 mrad. Surface roughness can significantly contribute to PSF broadening and limit telescope performances. Fortunately, manufacturing techniques for mirrors are now available to keep the optical scattering well below the geometrically-predictable effect of figure errors. This paper determines first order surface finish tolerances based on a surface microroughness characterization campaign, using Phase Shift Interferometry. That allows us to compute the roughness contribution to Cherenkov telescope PSF. This study is performed for diverse mirror candidates (MAGIC-I and II, ASTRI, MST) varying in manufacture technologies, selected coating materials and taking into account the degradation over time due to environmental hazards.

  2. Enhancing capillary rise on a rough surface

    NASA Astrophysics Data System (ADS)

    Chow, Melissa; Wexler, Jason; Jacobi, Ian; Stone, Howard

    2014-11-01

    Liquid-infused surfaces have been proposed as a robust alternative to traditional air-cushioned superhydrophobic surfaces. However, if these surfaces are held vertically the lubricating oil can drain from the surface, and cause the surface to lose its novel properties. To examine this failure mode, we measure the drainage from a surface with model roughness that is scaled-up to allow for detailed measurements. We confirm that the bulk fluid drains from the surface until it reaches the level of the capillary rise height, although the detailed dynamics vary even in simple surface geometries. We then test different substrate architectures to explore how the roughness can be designed to retain greater amounts of oil. Supported under MRSEC NSF DMR 0819860 (PI: Prof. N. Phuan Ong) REU Site Grant: NSF DMR-1156422 (PI: Prof. Mikko Haataja), PREM CSUN Prime # NSF 1205734 and ONR MURI Grants N00014-12-1-0875 and N00014-12-1-0962 (Program Manager Dr. Ki-Han Kim).

  3. Regulation of endoplasmic reticulum Ca2+ oscillations in mammalian eggs

    PubMed Central

    Wakai, Takuya; Zhang, Nan; Vangheluwe, Peter; Fissore, Rafael A.

    2013-01-01

    Summary Changes in the intracellular concentration of free calcium ([Ca2+]i) regulate diverse cellular processes including fertilization. In mammalian eggs, the [Ca2+]i changes induced by the sperm unfold in a pattern of periodical rises, also known as [Ca2+]i oscillations. The source of Ca2+ during oscillations is the endoplasmic reticulum ([Ca2+]ER), but it is presently unknown how [Ca2+]ER is regulated. Here, we show using mouse eggs that [Ca2+]i oscillations induced by a variety of agonists, including PLCζ, SrCl2 and thimerosal, provoke simultaneous but opposite changes in [Ca2+]ER and cause differential effects on the refilling and overall load of [Ca2+]ER. We also found that Ca2+ influx is required to refill [Ca2+]ER, because the loss of [Ca2+]ER was accelerated in medium devoid of Ca2+. Pharmacological inactivation of the function of the mitochondria and of the Ca2+-ATPase pumps PMCA and SERCA altered the pattern of oscillations and abruptly reduced [Ca2+]ER, especially after inactivation of mitochondria and SERCA functions. We also examined the expression of SERCA2b protein and found that it was expressed throughout oocyte maturation and attained a conspicuous cortical cluster organization in mature eggs. We show that its overexpression reduces the duration of inositol-1,4,5-trisphosphate-induced [Ca2+]i rises, promotes initiation of oscillations and enhances refilling of [Ca2+]ER. Collectively, our results provide novel insights on the regulation of [Ca2+]ER oscillations, which underlie the unique Ca2+-signalling system that activates the developmental program in mammalian eggs. PMID:24101727

  4. Endoplasmic reticulum stress activates transglutaminase 2 leading to protein aggregation

    PubMed Central

    LEE, JIN-HAENG; JEONG, JAEHO; JEONG, EUI MAN; CHO, SUNG-YUP; KANG, JEONG WOOK; LIM, JISUN; HEO, JINBEOM; KANG, HYUNSOOK; KIM, IN-GYU; SHIN, DONG-MYUNG

    2014-01-01

    Aberrant activation of transglutaminase 2 (TGase2) contributes to a variety of protein conformational disorders such as neurodegenerative diseases and age-related cataracts. The accumulation of improperly folded proteins in the endoplasmic reticulum (ER) triggers the unfolded protein response (UPR), which promotes either repair or degradation of the damaged proteins. Inadequate UPR results in protein aggregation that may contribute to the development of age-related degenerative diseases. TGase2 is a calcium-dependent enzyme that irreversibly modifies proteins by forming cross-linked protein aggregates. Intracellular TGase2 is activated by oxidative stress which generates large quantities of unfolded proteins. However, the relationship between TGase2 activity and UPR has not yet been established. In the present study, we demonstrated that ER stress activated TGase2 in various cell types. TGase2 activation was dependent on the ER stress-induced increase in the intracellular calcium ion concentration but not on the TGase2 protein expression level. Enzyme substrate analysis revealed that TGase2-mediated protein modification promoted protein aggregation concurrently with decreasing water solubility. Moreover, treatment with KCC009, a TGase2 inhibitor, abrogated ER stress-induced TGase2 activation and subsequent protein aggregation. However, TGase2 activation had no effect on ER stress-induced cell death. These results demonstrate that the accumulation of misfolded proteins activates TGase2, which further accelerates the formation of protein aggregates. Therefore, we suggest that inhibition of TGase2 may be a novel strategy by which to prevent the protein aggregation in age-related degenerative diseases. PMID:24481335

  5. Disulfide Mispairing During Proinsulin Folding in the Endoplasmic Reticulum.

    PubMed

    Haataja, Leena; Manickam, Nandini; Soliman, Ann; Tsai, Billy; Liu, Ming; Arvan, Peter

    2016-04-01

    Proinsulin folding within the endoplasmic reticulum (ER) remains incompletely understood, but it is clear that in mutant INS gene-induced diabetes of youth (MIDY), progression of the (three) native disulfide bonds of proinsulin becomes derailed, causing insulin deficiency, β-cell ER stress, and onset of diabetes. Herein, we have undertaken a molecular dissection of proinsulin disulfide bond formation, using bioengineered proinsulins that can form only two (or even only one) of the native proinsulin disulfide bonds. In the absence of preexisting proinsulin disulfide pairing, Cys(B19)-Cys(A20) (a major determinant of ER stress response activation and proinsulin stability) preferentially initiates B-A chain disulfide bond formation, whereas Cys(B7)-Cys(A7) can initiate only under oxidizing conditions beyond that existing within the ER of β-cells. Interestingly, formation of these two "interchain" disulfide bonds demonstrates cooperativity, and together, they are sufficient to confer intracellular transport competence to proinsulin. The three most common proinsulin disulfide mispairings in the ER appear to involve Cys(A11)-Cys(A20), Cys(A7)-Cys(A20), and Cys(B19)-Cys(A11), each disrupting the critical Cys(B19)-Cys(A20) pairing. MIDY mutations inhibit Cys(B19)-Cys(A20) formation, but treatment to force oxidation of this disulfide bond improves folding and results in a small but detectable increase of proinsulin export. These data suggest possible therapeutic avenues to ameliorate ER stress and diabetes. PMID:26822090

  6. Diverse roles of endoplasmic reticulum stress sensors in bacterial infection.

    PubMed

    Pillich, Helena; Loose, Maria; Zimmer, Klaus-Peter; Chakraborty, Trinad

    2016-12-01

    Bacterial infection often leads to cellular damage, primarily marked by loss of cellular integrity and cell death. However, in recent years, it is being increasingly recognized that, in individual cells, there are graded responses collectively termed cell-autonomous defense mechanisms that induce cellular processes designed to limit cell damage, enable repair, and eliminate bacteria. Many of these responses are triggered not by detection of a particular bacterial effector or ligand but rather by their effects on key cellular processes and changes in homeostasis induced by microbial effectors when recognized. These in turn lead to a decrease in essential cellular functions such as protein translation or mitochondrial respiration and the induction of innate immune responses that may be specific to the cellular deficit induced. These processes are often associated with specific cell compartments, e.g., the endoplasmic reticulum (ER). Under non-infection conditions, these systems are generally involved in sensing cellular stress and in inducing and orchestrating the subsequent cellular response. Thus, perturbations of ER homeostasis result in accumulation of unfolded proteins which are detected by ER stress sensors in order to restore the normal condition. The ER is also important during bacterial infection, and bacterial effectors that activate the ER stress sensors have been discovered. Increasing evidence now indicate that bacteria have evolved strategies to differentially activate different arms of ER stress sensors resulting in specific host cell response. In this review, we will describe the mechanisms used by bacteria to activate the ER stress sensors and discuss their role during infection. PMID:26883353

  7. Endoplasmic reticulum aminopeptidase 1 and rheumatic disease: functional variation

    PubMed Central

    Tran, Tri M.; Colbert, Robert A.

    2015-01-01

    Purpose of review To review recent developments in our understanding of endoplasmic reticulum (ER) aminopeptidase-1 (ERAP1) function in relation to its role in MHC class I peptide presentation and HLA class I-associated diseases. Recent findings ERAP1 polymorphisms exhibiting loss-of-function have been associated with protection from ankylosing spondylitis (AS). The aminopeptidase function of ERAP1 optimizes peptides for binding and presentation by MHC class I. Most studies have revealed reduced MHC class I expression in situations of reduced ERAP1 function. Under these circumstances the presented peptides are often N-terminally extended, and cell surface complexes are unstable and fall apart more readily. In contrast, peptides presented by HLA-B*27:05 when ERAP1 is silenced are frequently extended on the C-terminus. Recent work has emphasized the importance of assessing the function of allotypes encoded by ERAP1 haplotypes, rather than effects of single amino acid substitutions. The allotypes found in a series of AS patients were poorer at restoring HLA-B27 expression than allotypes found in unaffected controls, which may seem contrary to the genetic data linking loss-of-function to protection. Summary More work is needed to understand how ERAP1 variants associated with risk and protection influence the quality and quantity of peptides available for binding to HLA class I molecules in the ER. Moreover, we need to determine allele-specific effects of ERAP1 variants in the context of HLA-B*51 and HLA-Cw*6, which are associated with Behçet’s disease and psoriasis, respectively. PMID:26002027

  8. Endoplasmic reticulum stress: key promoter of rosacea pathogenesis.

    PubMed

    Melnik, Bodo C

    2014-12-01

    Recent scientific interest in the pathogenesis of rosacea focuses on abnormally high facial skin levels of cathelicidin and the trypsin-like serine protease kallikrein 5 (KLK5) that cleaves the cathelicidin precursor protein into the bioactive fragment LL-37, which exerts crucial proinflammatory, angiogenic and antimicrobial activities. Furthermore, increased expression of toll-like receptor 2 (TLR2) has been identified in rosacea skin supporting the participation of the innate immune system. Notably, TLRs are expressed on sensory neurons and increase neuronal excitability linking TLR signalling to the transmission of neuroinflammatory responses. It is the intention of this viewpoint to present a unifying concept that links all known clinical trigger factors of rosacea such as UV irradiation, heat, skin irritants and special foods to one converging point: enhanced endoplasmic reticulum (ER) stress that activates the unfolded protein response (UPR). ER stress via upregulation of transcription factor ATF4 increases TLR2 expression, resulting in enhanced production of cathelicidin and KLK5 mediating downstream proinflammatory, angiogenic and antimicrobial signalling. The presented concept identifies rosacea trigger factors as environmental stressors that enhance the skin's ER stress response. Exaggerated cutaneous ER stress that stimulates the TLR2-driven inflammatory response may involve sebocytes, keratinocytes, monocyte-macrophages and sensory cutaneous neurons. Finally, all antirosacea drugs are proposed to attenuate the ER stress signalling cascade at some point. Overstimulated ER stress signalling may have evolutionarily evolved as a compensatory mechanism to balance impaired vitamin D-driven LL-37-mediated antimicrobial defenses due to lower exposure of UV-B irradiation of the northern Celtic population. PMID:25047092

  9. The role of endoplasmic reticulum stress in hippocampal insulin resistance.

    PubMed

    Sims-Robinson, Catrina; Bakeman, Anna; Glasser, Rebecca; Boggs, Janet; Pacut, Crystal; Feldman, Eva L

    2016-03-01

    Metabolic syndrome, which includes hypertension, hyperglycemia, obesity, insulin resistance, and dyslipidemia, has a negative impact on cognitive health. Endoplasmic reticulum (ER) stress is activated during metabolic syndrome, however it is not known which factor associated with metabolic syndrome contributes to this stress. ER stress has been reported to play a role in the development of insulin resistance in peripheral tissues. The role of ER stress in the development of insulin resistance in hippocampal neurons is not known. In the current study, we investigated ER stress in the hippocampus of 3 different mouse models of metabolic syndrome: the C57BL6 mouse on a high fat (HF) diet; apolipoprotein E, leptin, and apolipoprotein B-48 deficient (ApoE 3KO) mice; and the low density lipoprotein receptor, leptin, and apolipoprotein B-48 deficient (LDLR 3KO) mice. We demonstrate that ER stress is activated in the hippocampus of HF mice, and for the first time, in ApoE 3KO mice, but not LDLR 3KO mice. The HF and ApoE 3KO mice are hyperglycemic; however, the LDLR 3KO mice have normal glycemia. This suggests that hyperglycemia may play a role in the activation of ER stress in the hippocampus. Similarly, we also demonstrate that impaired insulin signaling is only present in the HF and ApoE 3KO mice, which suggests that ER stress may play a role in insulin resistance in the hippocampus. To confirm this we pharmacologically induced ER stress with thapsigargin in human hippocampal neurons. We demonstrate for the first time that thapsigargin leads to ER stress and impaired insulin signaling in human hippocampal neurons. Our results may provide a potential mechanism that links metabolic syndrome and cognitive health. PMID:26775176

  10. Ethanol Induces Endoplasmic Reticulum Stress in the Developing Brain

    PubMed Central

    Ke, Zunji; Wang, Xin; Liu, Ying; Fan, Zhiqin; Chen, Gang; Xu, Mei; Bower, Kimberley A.; Frank, Jacqueline A.; Li, Mingtao; Fang, Shengyun; Shi, Xianglin; Luo, Jia

    2016-01-01

    Background Ethanol exposure during brain development causes profound damages to the central nervous system (CNS). The underlying cellular/molecular mechanisms remain unclear. The endoplasmic reticulum (ER) is involved in posttranslational protein processing and transport. The accumulation of unfolded or misfolded proteins in the ER lumen triggers ER stress, which is characterized by translational attenuation, synthesis of ER chaperone proteins, and activation of transcription factors. Sustained ER stress ultimately leads to cell death. ER stress is implicated in various neurodegenerative processes. Methods Using a third trimester equivalent mouse model of ethanol exposure, we tested the hypothesis that ethanol induces ER stress in the developing brain. Seven-day-old C57BL/6 mice were acutely exposed to ethanol by subcutaneous injection and the expression of ER stress-inducible proteins (ERSIPs) and signaling pathways associated with ER stress were examined. Results Ethanol exposure significantly increased the expression of ERSIPs and activated signaling pathways associated with ER stress; these include ATF6, CHOP/GADD153, GRP78, and mesencephalic astrocyte-derived neurotrophic factor as well as the phosphorylation of IRE1α, eIF2α, PERK, and PKR. The ethanol-induced increase in ERSIPs occurred within 4 hours of ethanol injection, and levels of some ERSIPs remained elevated after 24 hours of ethanol exposure. Ethanol-induced increase in phosphorylated eIF2α, caspase-12, and CHOP was distributed in neurons of specific areas of the cerebral cortex, hippocampus, and thalamus. Conclusions Our finding indicates that ethanol induces ER stress in immature neurons, providing novel insight into ethanol’s detrimental effect on the developing CNS. PMID:21599712

  11. Targeted induction of endoplasmic reticulum stress induces cartilage pathology.

    PubMed

    Rajpar, M Helen; McDermott, Ben; Kung, Louise; Eardley, Rachel; Knowles, Lynette; Heeran, Mel; Thornton, David J; Wilson, Richard; Bateman, John F; Poulsom, Richard; Arvan, Peter; Kadler, Karl E; Briggs, Michael D; Boot-Handford, Raymond P

    2009-10-01

    Pathologies caused by mutations in extracellular matrix proteins are generally considered to result from the synthesis of extracellular matrices that are defective. Mutations in type X collagen cause metaphyseal chondrodysplasia type Schmid (MCDS), a disorder characterised by dwarfism and an expanded growth plate hypertrophic zone. We generated a knock-in mouse model of an MCDS-causing mutation (COL10A1 p.Asn617Lys) to investigate pathogenic mechanisms linking genotype and phenotype. Mice expressing the collagen X mutation had shortened limbs and an expanded hypertrophic zone. Chondrocytes in the hypertrophic zone exhibited endoplasmic reticulum (ER) stress and a robust unfolded protein response (UPR) due to intracellular retention of mutant protein. Hypertrophic chondrocyte differentiation and osteoclast recruitment were significantly reduced indicating that the hypertrophic zone was expanded due to a decreased rate of VEGF-mediated vascular invasion of the growth plate. To test directly the role of ER stress and UPR in generating the MCDS phenotype, we produced transgenic mouse lines that used the collagen X promoter to drive expression of an ER stress-inducing protein (the cog mutant of thyroglobulin) in hypertrophic chondrocytes. The hypertrophic chondrocytes in this mouse exhibited ER stress with a characteristic UPR response. In addition, the hypertrophic zone was expanded, gene expression patterns were disrupted, osteoclast recruitment to the vascular invasion front was reduced, and long bone growth decreased. Our data demonstrate that triggering ER stress per se in hypertrophic chondrocytes is sufficient to induce the essential features of the cartilage pathology associated with MCDS and confirm that ER stress is a central pathogenic factor in the disease mechanism. These findings support the contention that ER stress may play a direct role in the pathogenesis of many connective tissue disorders associated with the expression of mutant extracellular matrix

  12. Pael receptor, endoplasmic reticulum stress, and Parkinson's disease.

    PubMed

    Takahashi, Ryosuke; Imai, Yuzuru

    2003-10-01

    Autosomal recessive juvenile parkinsonism (AR-JP) is caused by mutations of the parkin gene. Parkin is an E3 ubiquitin ligase that specifically recognizes its substrate protein, promoting its ubiquitination and subsequent degradation. Accordingly, we hypothesized that AR-JP may be caused by accumulation of an unidentified neurotoxic protein, which is a substrate of parkin. Based on this hypothesis, we cloned parkin-binding protein using a yeast two-hybrid system and identified a putative G protein-coupled receptor protein,which we named the Pael receptor (Pael-R). When overexpressed in cells, this receptor became unfolded, insoluble, and ubiquitinated. Accumulation of the insoluble Pael-R subsequently led to endoplasmic reticulum (ER) stress-induced cell death. Parkin specifically ubiquitinates the unfolded Pael-R and promotes its degradation, resulting in suppression of cell death induced by the accumulation of unfolded Pael-R. Moreover, insoluble Pael-R accumulates in the brains of AR-JP patients. It is highly expressed by the dopaminergic neurons of the substantia nigra, strongly suggesting that accumulation of unfolded Pael-R may lead to selective death of dopaminergic neurons in AR-JP.Recently, we identified Hsp70 and its co-chaperone CHIP as novel parkin-binding partners. We found that CHIP enhanced parkinmediated ubiquitination of Pael-R. In concert with Hsp70, CHIP also enhanced the ability of parkin to inhibit cell death induced by Pael-R, indicating that CHIP and Hsp70 are both co-factors of parkin. PMID:14579121

  13. Cortisol promotes endoplasmic glucose production via pyridine nucleotide redox.

    PubMed

    Wang, Zengmin; Mick, Gail J; Xie, Rongrong; Wang, Xudong; Xie, Xuemei; Li, Guimei; McCormick, Kenneth L

    2016-04-01

    Both increased adrenal and peripheral cortisol production, the latter governed by 11β-hydroxysteroid dehydrogenase type 1 (11β-HSD1), contribute to the maintenance of fasting blood glucose. In the endoplasmic reticulum (ER), the pyridine nucleotide redox state (NADP/NADPH) is dictated by the concentration of glucose-6-phosphate (G6P) and the coordinated activities of two enzymes, hexose-6-phosphate dehydrogenase (H6PDH) and 11β-HSD1. However, luminal G6P may similarly serve as a substrate for hepatic glucose-6-phophatase (G6Pase). A tacit belief is that the G6P pool in the ER is equally accessible to both H6PDH and G6Pase. Based on our inhibition studies and kinetic analysis in isolated rat liver microsomes, these two aforesaid luminal enzymes do share the G6P pool in the ER, but not equally. Based on the kinetic modeling of G6P flux, the ER transporter for G6P (T1) preferentially delivers this substrate to G6Pase; hence, the luminal enzymes do not share G6P equally. Moreover, cortisol, acting through 11β-HSD1, begets a more reduced pyridine redox ratio. By altering this luminal redox ratio, G6P flux through H6PDH is restrained, allowing more G6P for the competing enzyme G6Pase. And, at low G6P concentrations in the ER lumen, which occur during fasting, this acute cortisol-induced redox adjustment promotes glucose production. This reproducible cortisol-driven mechanism has been heretofore unrecognized. PMID:26860459

  14. Higher plant Ca(2+)-ATPase: primary structure and regulation of mRNA abundance by salt.

    PubMed Central

    Wimmers, L E; Ewing, N N; Bennett, A B

    1992-01-01

    Calcium-dependent regulatory mechanisms participate in diverse developmentally, hormonally, and environmentally regulated processes, with the precise control of cytosolic Ca2+ concentration being critical to such mechanisms. In plant cells, P-type Ca(2+)-ATPases localized in the plasma membrane and the endoplasmic reticulum are thought to play a central role in regulating cytoplasmic Ca2+ concentrations. Ca(2+)-ATPase activity has been identified in isolated plant cell membranes, but the protein has not been characterized at the molecular level. We have isolated a partial-length cDNA (LCA1) and a complete genomic clone (gLCA13) encoding a putative endoplasmic reticulum-localized Ca(2+)-ATPase in tomato. The deduced amino acid sequence specifies a protein (Lycopersicon Ca(2+)-ATPase) of 1048 amino acids with a molecular mass of 116 kDa, eight probable transmembrane domains, and all of the highly conserved functional domains common to P-type cation-translocating ATPases. In addition, the protein shares approximately 50% amino acid sequence identify with animal sarcoplasmic/endoplasmic reticulum Ca(2+)-ATPases but less than 30% identity with other P-type ATPases. Genomic DNA blot hybridization analysis indicates that the Lycopersicon Ca(2+)-ATPase is encoded by a single gene. RNA blot hybridization analysis indicates the presence of three transcript sizes in root tissue and a single, much less abundant, transcript in leaves. Lycopersicon Ca(2+)-ATPase mRNA levels increase dramatically upon a 1-day exposure to 50 mM NaCl. Thus this report describes the primary structure of a higher-plant Ca(2+)-ATPase and the regulation of its mRNA abundance by salt stress. Images PMID:1384045

  15. Soil surface roughness characterization for microwave remote sensing applications

    NASA Astrophysics Data System (ADS)

    Marzahn, P.; Rieke-Zapp, D.; Ludwig, R.

    2012-04-01

    With this poster we present a simple and efficient method to measure soil surface roughness in an agricultural environment. Micro scale soil surface roughness is a crucial parameter in many environmental applications. In recent studies it is strongly recognized that soil surface roughness significantly influences the backscatter of agricultural surface, especially on bare fields. Indeed, while different roughness indices depend on their measurement length, no satisfying roughness parametrization and measurement technique has been found yet, introducing large uncertainty in the interpretation of the radar backscattering. In this study, we introduce a photogrammetric system which consists of a customized consumer grade Canon EOS 5d camera and a reference frame providing ground control points. With the system one can generate digital surface models (DSM) with a minimum size of 1 x 2.5 m2, extendable to any desired size, with a ground x,y- resolution of 2 mm. Using this approach, we generated a set of DSM with sizes ranging from 2.5 m2 to 22 m2, acquired over different roughness conditions representing ploughed, harrowed as well as crusted fields on different test sites. For roughness characterization we calculated in microwave remote sensing common roughness indices such as the RMS- height s and the autocorrelation length l. In an extensive statistical investigation we show the behavior of the roughness indices for different acquisition sizes of the proposed method. Results indicate, compared to results from profiles generated out of the dataset, that using a three dimensional measuring device, the calculated roughness indices are more robust in their estimation. In addition, a strong directional dependency of the proposed roughness indices was observed which could be related to the orientation of the seedbed rows to the acqusition direction. In a geostatistical analysis, we decomposed the acquired roughness indices into different scales, yielding a roughness quantity

  16. The rough endoplasmatic reticulum is a central nucleation site of siRNA-mediated RNA silencing.

    PubMed

    Stalder, Lukas; Heusermann, Wolf; Sokol, Lena; Trojer, Dominic; Wirz, Joel; Hean, Justin; Fritzsche, Anja; Aeschimann, Florian; Pfanzagl, Vera; Basselet, Pascal; Weiler, Jan; Hintersteiner, Martin; Morrissey, David V; Meisner-Kober, Nicole C

    2013-04-17

    Despite progress in mechanistic understanding of the RNA interference (RNAi) pathways, the subcellular sites of RNA silencing remain under debate. Here we show that loading of lipid-transfected siRNAs and endogenous microRNAs (miRNA) into RISC (RNA-induced silencing complexes), encounter of the target mRNA, and Ago2-mediated mRNA slicing in mammalian cells are nucleated at the rough endoplasmic reticulum (rER). Although the major RNAi pathway proteins are found in most subcellular compartments, the miRNA- and siRNA-loaded Ago2 populations co-sediment almost exclusively with the rER membranes, together with the RISC loading complex (RLC) factors Dicer, TAR RNA binding protein (TRBP) and protein activator of the interferon-induced protein kinase (PACT). Fractionation and membrane co-immune precipitations further confirm that siRNA-loaded Ago2 physically associates with the cytosolic side of the rER membrane. Additionally, RLC-associated double-stranded siRNA, diagnostic of RISC loading, and RISC-mediated mRNA cleavage products exclusively co-sediment with rER. Finally, we identify TRBP and PACT as key factors anchoring RISC to ER membranes in an RNA-independent manner. Together, our findings demonstrate that the outer rER membrane is a central nucleation site of siRNA-mediated RNA silencing. PMID:23511973

  17. The abundances of neon, sulfur, and argon in planetary nebulae

    NASA Technical Reports Server (NTRS)

    Beck, S. C.; Lacy, J. H.; Townes, C. H.; Aller, L. H.; Geballe, T. R.; Baas, F.

    1981-01-01

    New infrared observations of Ne II, Ar III, and S IV are used in optical observations of other ionization states of the considered elements to evaluate the abundances of neon, argon, and sulfur in 18 planetary nebulae. Attention is also given to one or more of the infrared lines in 18 other nebulae. It is pointed out that S IV was detected in approximately 90% of the observed objects, while Ar III was found in about 80%, and Ne II in roughly one-third. It is noted that optical observations typically include only a limited region of the nebula, while the infrared measurements frequently involve integration over the entire nebular image.

  18. Adjustment of roughness sublayer in turbulent flows over two-dimensional idealised roughness elements

    NASA Astrophysics Data System (ADS)

    HO, Yat-Kiu; LIU, Chun-Ho

    2015-04-01

    The atmospheric boundary layer (ABL) immediately above the urban canopy is the roughness sublayer (RSL). In this layer, flows and turbulence are strongly affected by the roughness elements beneath, e.g. building obstacles. The wind flows over urban areas could be represented by conventional logarithmic law of the wall (log-law) in the neutrally stratified ABL. However, in the RSL region, the vertical wind profile deviates from that predicted from log-law and the effect could be extended from ground level up to several canopy heights. As a result, the Monin-Obukhov similarity theory (MOST) fails and an additional length scale is required to describe the flows. The key aim of this study is to introduce a simple wind profile model which accounts for the effect of the RSL in neutral stratification using wind tunnel experiments. Profile measurements of wind speeds and turbulence quantities over various two-dimensional (2D) idealised roughness elements are carried out in an open-circuit wind tunnel with test section of size 560 mm (width) × 560 mm (height) × 6 m (length). The separation between the roughness elements is varied systematically so that ten different types of surface forms are adopted. The velocity measurements are obtained by hot-wire anemometry using X-probe design (for UW- measurements) with a constant temperature anemometer. For each configuration, eight vertical profiles are collected over the canopy, including solid boundaries and cavities of the roughness elements. Firstly, we compute the measurement results using conventional MOST to determine different roughness parameters. Afterwards, we derive the RSL height from the Reynolds stress profiles. Since the profiles taken from different locations of the canopy are eventually converged with increasing height, we use this 'congregated height' to define the RSL height. Next, we introduce an alternative function, i.e. power-law function, instead of MOST, to describe the velocity profile in attempt to

  19. Characteristics of surface roughness associated with leading edge ice accretion

    NASA Technical Reports Server (NTRS)

    Shin, Jaiwon

    1994-01-01

    Detailed size measurements of surface roughness associated with leading edge ice accretions are presented to provide information on characteristics of roughness and trends of roughness development with various icing parameters. Data was obtained from icing tests conducted in the Icing Research Tunnel (IRT) at NASA Lewis Research Center (LeRC) using a NACA 0012 airfoil. Measurements include diameters, heights, and spacing of roughness elements along with chordwise icing limits. Results confirm the existence of smooth and rough ice zones and that the boundary between the two zones (surface roughness transition region) moves upstream towards stagnation region with time. The height of roughness grows as the air temperature and the liquid water content increase, however, the airspeed has little effect on the roughness height. Results also show that the roughness in the surface roughness transition region grows during a very early stage of accretion but reaches a critical height and then remains fairly constant. Results also indicate that a uniformly distributed roughness model is only valid at a very initial stage of the ice accretion process.

  20. Topography-based flow-directional roughness: potential and challenges

    NASA Astrophysics Data System (ADS)

    Trevisani, Sebastiano; Cavalli, Marco

    2016-04-01

    Surface texture analysis applied to high-resolution digital terrain models (HRDTMs) is a promising approach for extracting useful fine-scale morphological information. Surface roughness, considered here as a synonym of surface texture, can have a discriminant role in the detection of different geomorphic processes and factors. Very often, the local morphology presents, at different scales, anisotropic characteristics that could be taken into account when calculating or measuring surface roughness. The high morphological detail of HRDTMs permits the description of different aspects of surface roughness, beyond an evaluation limited to isotropic measures of surface roughness. The generalization of the concept of roughness implies the need to refer to a family of specific roughness indices capable of capturing specific multiscale and anisotropic aspects of surface morphology. An interesting set of roughness indices is represented by directional measures of roughness that can be meaningful in the context of analyzed and modeled flow processes. Accordingly, we test the application of a flow-oriented directional measure of roughness based on the geostatistical bivariate index MAD (median of absolute directional differences), which is computed considering surface gravity-driven flow direction. MAD is derived from a modification of a variogram and is specifically designed for the geomorphometric analysis of HRDTMs. The presented approach shows the potential impact of considering directionality in the calculation of roughness indices. The results demonstrate that the use of flow-directional roughness can improve geomorphometric modeling (e.g., sediment connectivity and surface texture modeling) and the interpretation of landscape morphology.

  1. Topography-based flow-directional roughness: potential and challenges

    NASA Astrophysics Data System (ADS)

    Trevisani, S.; Cavalli, M.

    2015-12-01

    Surface texture analysis applied to High Resolution Digital Terrain Models (HRDTMs) is a promising approach for extracting useful fine-scale morphological information. Surface roughness, considered here as a synonym of surface texture, can have a discriminant role in the detection of different geomorphic processes and factors. Very often, the local morphology presents, at different scales, anisotropic characteristics that could be taken into account when calculating or measuring surface roughness. The high morphological detail of HRDTMs permits the description of different aspects of surface roughness, beyond an evaluation limited to isotropic measures of surface roughness. The generalization of the concept of roughness implies the need to refer to a family of specific roughness indices capable of capturing specific multi-scale and anisotropic aspects of surface morphology. An interesting set of roughness indices is represented by directional measures of roughness that can be meaningful in the context of analyzed and modeled flow processes. Accordingly, we test the application of a flow-oriented directional measure of roughness based on the geostatistical bivariate index MAD (median of absolute directional differences), which is computed considering surface gravity-driven flow direction. MAD is derived from a modification of a variogram and is specifically designed for the geomorphometric analysis of HRDTMs. The presented approach shows the potential impact of considering directionality in the calculation of roughness indices. The results demonstrate that the use of flow directional roughness can improve geomorphometric modeling (e.g., sediment connectivity and surface texture modeling) and the interpretation of landscape morphology.

  2. Roughness Induced Transition in a Supersonic Boundary Layer

    NASA Technical Reports Server (NTRS)

    Balakumar, Ponnampalam; Kergerise, Michael A.

    2013-01-01

    Direct numerical simulation is used to investigate the transition induced by threedimensional isolated roughness elements in a supersonic boundary layer at a free stream Mach number of 3.5. Simulations are performed for two different configurations: one is a square planform roughness and the other is a diamond planform roughness. The mean-flow calculations show that the roughness induces counter rotating streamwise vortices downstream of the roughness. These vortices persist for a long distance downstream and lift the low momentum fluid from the near wall region and place it near the outer part of the boundary layer. This forms highly inflectional boundary layer profiles. These observations agree with recent experimental observations. The receptivity calculations showed that the amplitudes of the mass-flux fluctuations near the neutral point for the diamond shape roughness are the same as the amplitude of the acoustic disturbances. They are three times smaller for the square shape roughness.

  3. Global Distribution of Microbial Abundance and Biomass in Subseafloor Sediment

    NASA Astrophysics Data System (ADS)

    Kallmeyer, J.; Pockalny, R. A.; Adhikari, R. R.; Smith, D. C.; D'Hondt, S. L.

    2012-12-01

    Previously published cell counts were mostly from ocean margins and the eastern equatorial Pacific. Cell counts from these environments are generally similar from site to site and decrease logarithmically with sediment depth, although there can be sharp peaks of high cell densities in zones of anaerobic methane-oxidation. Recent counts from the South Pacific Gyre and the North Pacific Gyre are several orders of magnitude lower and show a more rapid decrease with depth than all previously published datasets. With these new data available, total microbial cell abundance in subseafloor sediment varies between sites by ca. five orders of magnitude. The differences between cell counts from ocean margins and upwelling areas and cell counts from oceanic gyres raise three questions. First, how does the abundance of microbes in subseafloor sediment vary throughout the world ocean? Second, what property or properties are likely to control that variation? Third, how does this variation affect estimates of total subseafloor sedimentary biomass and Earth's total biomass? To address these questions, we compiled our cell counts from the South Pacific Gyre, the North Pacific Gyre and the eastern equatorial Pacific Ocean with previously published counts and parameterized the cell distribution at each site and determined two parameters, (i) cell concentration at 1 mbsf and (ii) rate of decrease in cell counts with depth. Both parameters are strongly correlated with mean sedimentation rate and distance to shore. Based on these correlations, we estimate global subseafloor sedimentary microbial abundance to be 2.9*1029 cells (corresponding to 4.1 Pg C and ~0.6% of Earth's total living biomass). This estimate of subseafloor sedimentary microbial abundance is roughly equal to previous estimates of total microbial abundance in seawater and total microbial abundance in soil. It is much lower than previous estimates of subseafloor sedimentary microbial abundance. In consequence, we estimate

  4. Light depolarization in off-specular reflection on submicro rough metal surfaces with imperfectly random roughness.

    PubMed

    Liu, Linsheng; Li, Xuefeng; Nonaka, Kazuhiro

    2015-02-01

    Depolarization at a rough surface relates to its roughness and irregularity (e.g., sags and crests) besides the material property. However, there is still lack of general theory to clearly describe the relationship between depolarization ratios and surface conditions, and one important reason is that the mechanism of depolarization relates to geometric parameters such as microcosmic height/particle distributions of sub-micro to nm levels. To study the mechanism in more detail, a compact laser instrument is developed, and depolarization information of a linearly polarized incident light is used for analyzing the roughness, during which a He-Ne laser source (λ = 632.8 nm) is used. Three nickel specimens with RMS roughness (Rq) less than λ/4 are fabricated and tested. Six different areas in each specimen are characterized in detail using an AFM. Rq are in the range of 34.1-155.0 nm, and the heights are non-Gaussian distribution in the first specimen and near-Gaussian distribution in the others. Off-specular inspection is carried out exactly on these 18 characterized areas, and results show that the cross-polarization ratios match quite well with Rq values of the first sample that has Rq ≤ λ/10 (or Rt ≤ λ), while they match well with maximum height, Rt, values of the other two that have Rt > λ (the maximum derivation is 11%). In addition, since this instrument is simple, portable, stable, and low-cost, it has great potential for practical online roughness testing after a linear calibration. PMID:25725823

  5. Reticulon-like-1, the Drosophila orthologue of the hereditary spastic paraplegia gene reticulon 2, is required for organization of endoplasmic reticulum and of distal motor axons.

    PubMed

    O'Sullivan, Niamh C; Jahn, Thomas R; Reid, Evan; O'Kane, Cahir J

    2012-08-01

    Several causative genes for hereditary spastic paraplegia encode proteins with intramembrane hairpin loops that contribute to the curvature of the endoplasmic reticulum (ER), but the relevance of this function to axonal degeneration is not understood. One of these genes is reticulon2. In contrast to mammals, Drosophila has only one widely expressed reticulon orthologue, Rtnl1, and we therefore used Drosophila to test its importance for ER organization and axonal function. Rtnl1 distribution overlapped with that of the ER, but in contrast to the rough ER, was enriched in axons. The loss of Rtnl1 led to the expansion of the rough or sheet ER in larval epidermis and elevated levels of ER stress. It also caused abnormalities specifically within distal portions of longer motor axons and in their presynaptic terminals, including disruption of the smooth ER (SER), the microtubule cytoskeleton and mitochondria. In contrast, proximal axon portions appeared unaffected. Our results provide direct evidence for reticulon function in the organization of the SER in distal longer axons, and support a model in which spastic paraplegia can be caused by impairment of axonal the SER. Our data provide a route to further understanding of both the role of the SER in axons and the pathological consequences of the impairment of this compartment. PMID:22543973

  6. mRNA Targeting to Endoplasmic Reticulum Precedes Ago Protein Interaction and MicroRNA (miRNA)-mediated Translation Repression in Mammalian Cells*

    PubMed Central

    Barman, Bahnisikha; Bhattacharyya, Suvendra N.

    2015-01-01

    MicroRNA (miRNA) binds to the 3′-UTR of its target mRNAs to repress protein synthesis. Extensive research was done to understand the mechanism of miRNA-mediated repression in animal cells. Considering the progress in understanding the mechanism, information about the subcellular sites of miRNA-mediated repression is surprisingly limited. In this study, using an inducible expression system for an miRNA target message, we have delineated how a target mRNA passes through polysome association and Ago2 interaction steps on rough endoplasmic reticulum (ER) before the miRNA-mediated repression sets in. From this study, de novo formed target mRNA localization to the ER-bound polysomes manifested as the earliest event, which is followed by Ago2 micro-ribonucleoprotein binding, and translation repression of target message. Compartmentalization of this process to rough ER membrane ensures enrichment of miRNA-targeted messages and micro-ribonucleoprotein components on ER upon reaching a steady state. PMID:26304123

  7. Surface roughness of anodized titanium coatings.

    SciTech Connect

    Dugger, Michael Thomas; Chinn, Douglas Alan

    2010-10-01

    Samples of grade five 6Al4V titanium alloy were coated with two commercial fluoropolymer anodizations (Tiodize and Canadize) and compared. Neither coating demonstrates significant outgassing. The coatings show very similar elemental analysis, except for the presence of lead in the Canadize coating, which may account for its lower surface friction in humid environments. Surface roughness has been compared by SEM, contact profilometry, optical profilometry, power spectral density and bidirectional scattering distribution function (BSDF). The Tiodize film is slightly smoother by all measurement methods, but the Canadize film shows slightly less scatter at all angles of incidence. Both films exhibited initial friction coefficients of 0.2 to 0.4, increasing to 0.4 to 0.8 after 1000 cycles of sliding due to wear of the coating and ball. The coatings are very similar and should behave identically in most applications.

  8. Manning's roughness coefficient for Illinois streams

    USGS Publications Warehouse

    Soong, David T.; Prater, Crystal D.; Halfar, Teresa M.; Wobig, Loren A.

    2012-01-01

    Manning's roughness coefficients for 43 natural and constructed streams in Illinois are reported and displayed on a U.S. Geological Survey Web site. At a majority of the sites, discharge and stage were measured, and corresponding Manning's coefficients—the n-values—were determined at more than one river discharge. The n-values discussed in this report are computed from data representing the stream reach studied and, therefore, are reachwise values. Presentation of the resulting n-values takes a visual-comparison approach similar to the previously published Barnes report (1967), in which photographs of channel conditions, description of the site, and the resulting n-values are organized for each site. The Web site where the data can be accessed and are displayed is at URL http://il.water.usgs.gov/proj/nvalues/.

  9. Meaningful surface roughness and quality tolerances

    NASA Astrophysics Data System (ADS)

    Aikens, David M.

    2010-08-01

    Most tolerances on optical elements can be derived or calculated from the application requirements using computeraided optical design programs. For surface quality and surface roughness, however, there are few guidelines or tools for calculating appropriate tolerances. Typically, we simply use a legacy specification (e.g. 60-40 and 3 A RMS) with little thought for either the cost of achieving the specification or the penalty for failing to achieve it. Often these legacy specifications are ambiguous, unnecessarily costly and in some cases completely meaningless. This paper provides some basic rules and equations for calculation of the real or perceived impact of these specifications, and some guidelines for the initiate (and for some of us veterans as well) as to how to compose a meaningful tolerance.

  10. Theory of adhesion: Role of surface roughness

    NASA Astrophysics Data System (ADS)

    Persson, B. N. J.; Scaraggi, M.

    2014-09-01

    We discuss how surface roughness influences the adhesion between elastic solids. We introduce a Tabor number which depends on the length scale or magnification, and which gives information about the nature of the adhesion at different length scales. We consider two limiting cases relevant for (a) elastically hard solids with weak (or long ranged) adhesive interaction (DMT-limit) and (b) elastically soft solids with strong (or short ranged) adhesive interaction (JKR-limit). For the former cases we study the nature of the adhesion using different adhesive force laws (F ˜ u-n, n = 1.5-4, where u is the wall-wall separation). In general, adhesion may switch from DMT-like at short length scales to JKR-like at large (macroscopic) length scale. We compare the theory predictions to results of exact numerical simulations and find good agreement between theory and simulation results.

  11. The deadly connection between endoplasmic reticulum, Ca2+, protein synthesis, and the endoplasmic reticulum stress response in malignant glioma cells

    PubMed Central

    Johnson, Guyla G.; White, Misti C.; Wu, Jian-He; Vallejo, Matthew; Grimaldi, Maurizio

    2014-01-01

    Background The endoplasmic reticulum (ER) is involved in Ca2+ signaling and protein processing. Accumulation of unfolded proteins following ER Ca2+ depletion triggers the ER stress response (ERSR), which facilitates protein folding and removal of damaged proteins and can induce cell death. Unfolded proteins bind to chaperones, such as the glucose-regulated protein (GRP)78 and cause the release of GRP78-repressed proteins executing ERSR. Methods Several glioma cell lines and primary astrocytes were used to analyze ERSR using standard western blots, reverse transcription–PCR, viability assays, and single cell Ca2+ imaging. Results ERSR induction with thapsigargin results in a more intense ERSR associated with a larger loss of ER Ca2+, activation of ER-associated caspases (4/12) and caspase 3, and a higher rate of malignant glioma cell death than in normal glial cells. Malignant glioma cells have higher levels of protein synthesis and expression of the translocon (a component of the ribosomal complex, guiding protein entry in the ER), the activity of which is associated with the loss of ER Ca2+. Our experiments confirm increased expression of the translocon in malignant glioma cells. In addition, blockade of the ribosome-translocon complex with agents differently affecting translocon Ca2+ permeability causes opposite effects on ERSR deployment and death of malignant glioma cells. Conclusions Excessive ER Ca2+ loss due to translocon activity appears to be responsible for the enhancement of ERSR, leading to the death of glioma cells. The results reveal a characteristic of malignant glioma cells that could be exploited to develop new therapeutic strategies to treat incurable glial malignancies. PMID:24569545

  12. PARM-1 Is an Endoplasmic Reticulum Molecule Involved in Endoplasmic Reticulum Stress-Induced Apoptosis in Rat Cardiac Myocytes

    PubMed Central

    Isodono, Koji; Takahashi, Tomosaburo; Imoto, Hiroko; Nakanishi, Naohiko; Ogata, Takehiro; Asada, Satoshi; Adachi, Atsuo; Ueyama, Tomomi; Oh, Hidemasa; Matsubara, Hiroaki

    2010-01-01

    To identify novel transmembrane and secretory molecules expressed in cardiac myocytes, signal sequence trap screening was performed in rat neonatal cardiac myocytes. One of the molecules identified was a transmembrane protein, prostatic androgen repressed message-1 (PARM-1). While PARM-1 has been identified as a gene induced in prostate in response to castration, its function is largely unknown. Our expression analysis revealed that PARM-1 was specifically expressed in hearts and skeletal muscles, and in the heart, cardiac myocytes, but not non-myocytes expressed PARM-1. Immunofluorescent staining showed that PARM-1 was predominantly localized in endoplasmic reticulum (ER). In Dahl salt-sensitive rats, high-salt diet resulted in hypertension, cardiac hypertrophy and subsequent heart failure, and significantly stimulated PARM-1 expression in the hearts, with a concomitant increase in ER stress markers such as GRP78 and CHOP. In cultured cardiac myocytes, PARM-1 expression was stimulated by proinflammatory cytokines, but not by hypertrophic stimuli. A marked increase in PARM-1 expression was observed in response to ER stress inducers such as thapsigargin and tunicamycin, which also induced apoptotic cell death. Silencing PARM-1 expression by siRNAs enhanced apoptotic response in cardiac myocytes to ER stresses. PARM-1 silencing also repressed expression of PERK and ATF6, and augmented expression of CHOP without affecting IRE-1 expression and JNK and Caspase-12 activation. Thus, PARM-1 expression is induced by ER stress, which plays a protective role in cardiac myocytes through regulating PERK, ATF6 and CHOP expression. These results suggested that PARM-1 is a novel ER transmembrane molecule involved in cardiac remodeling in hypertensive heart disease. PMID:20305782

  13. Filamin depletion blocks endoplasmic spreading and destabilizes force-bearing adhesions.

    PubMed

    Lynch, Christopher D; Gauthier, Nils C; Biais, Nicolas; Lazar, Andre M; Roca-Cusachs, Pere; Yu, Cheng-Han; Sheetz, Michael P

    2011-04-15

    Cell motility is an essential process that depends on a coherent, cross-linked actin cytoskeleton that physically coordinates the actions of numerous structural and signaling molecules. The actin cross-linking protein, filamin (Fln), has been implicated in the support of three-dimensional cortical actin networks capable of both maintaining cellular integrity and withstanding large forces. Although numerous studies have examined cells lacking one of the multiple Fln isoforms, compensatory mechanisms can mask novel phenotypes only observable by further Fln depletion. Indeed, shRNA-mediated knockdown of FlnA in FlnB(-/-) mouse embryonic fibroblasts (MEFs) causes a novel endoplasmic spreading deficiency as detected by endoplasmic reticulum markers. Microtubule (MT) extension rates are also decreased but not by peripheral actin flow, because this is also decreased in the Fln-depleted system. Additionally, Fln-depleted MEFs exhibit decreased adhesion stability that appears in increased ruffling of the cell edge, reduced adhesion size, transient traction forces, and decreased stress fibers. FlnA(-/-) MEFs, but not FlnB(-/-) MEFs, also show a moderate defect in endoplasm spreading, characterized by initial extension followed by abrupt retractions and stress fiber fracture. FlnA localizes to actin linkages surrounding the endoplasm, adhesions, and stress fibers. Thus we suggest that Flns have a major role in the maintenance of actin-based mechanical linkages that enable endoplasmic spreading and MT extension as well as sustained traction forces and mature focal adhesions. PMID:21325628

  14. Enhanced thermoelectric performance of rough silicon nanowires.

    PubMed

    Hochbaum, Allon I; Chen, Renkun; Delgado, Raul Diaz; Liang, Wenjie; Garnett, Erik C; Najarian, Mark; Majumdar, Arun; Yang, Peidong

    2008-01-10

    Approximately 90 per cent of the world's power is generated by heat engines that use fossil fuel combustion as a heat source and typically operate at 30-40 per cent efficiency, such that roughly 15 terawatts of heat is lost to the environment. Thermoelectric modules could potentially convert part of this low-grade waste heat to electricity. Their efficiency depends on the thermoelectric figure of merit ZT of their material components, which is a function of the Seebeck coefficient, electrical resistivity, thermal conductivity and absolute temperature. Over the past five decades it has been challenging to increase ZT > 1, since the parameters of ZT are generally interdependent. While nanostructured thermoelectric materials can increase ZT > 1 (refs 2-4), the materials (Bi, Te, Pb, Sb, and Ag) and processes used are not often easy to scale to practically useful dimensions. Here we report the electrochemical synthesis of large-area, wafer-scale arrays of rough Si nanowires that are 20-300 nm in diameter. These nanowires have Seebeck coefficient and electrical resistivity values that are the same as doped bulk Si, but those with diameters of about 50 nm exhibit 100-fold reduction in thermal conductivity, yielding ZT = 0.6 at room temperature. For such nanowires, the lattice contribution to thermal conductivity approaches the amorphous limit for Si, which cannot be explained by current theories. Although bulk Si is a poor thermoelectric material, by greatly reducing thermal conductivity without much affecting the Seebeck coefficient and electrical resistivity, Si nanowire arrays show promise as high-performance, scalable thermoelectric materials. PMID:18185582

  15. A plasma membrane-type Ca[sup 2+]-ATPase of 120 kilodaltons on the endoplasmic reticulum from carrot (Daucus carota) cells

    SciTech Connect

    Chen, F.H.; Ratterman, D.M.; Sze, H. )

    1993-06-01

    Cytosolic Ca[sup 2+] levels are regulated in part by Ca[sup 2+]-pumping ATPases that export Ca[sup 2+] from the cytoplasm; The types and properties of Ca[sup 2+] pumps in plants are not well understood. The kinetic properties of a 120-kD phosphoenzyme (PE) intermediate formed during the reaction cycle of a Ca[sup 2+]-ATPase from suspension-cultured carrot (Daucus carota) cells are characterized. Only one Ca[sup 2+]-dependent phosphoprotein was formed when carrot membrane vesicles were incubated with [[gamma]-[sup 32]P]ATP. Formation of this 120-kD phosphoprotein was inhibited by vanadate, enhanced by La[sup 3+], and decreased by hydroxylamine, confirming its identification as an intermediate of a phosphorylated-type Ca[sup 2+]-translocating ATPase. The 120-kD Ca[sup 2+]-ATPase was most abundant in endoplasmic reticulum-enriched fractions, in which the Ca[sup 2+]-ATPase was estimated to be 0.1% of membrane protein. Direct quantitation of Ca[sup 2+]-dependent phosphoprotein was used to examine the kinetics of PE formation. PE formation exhibited a K[sub m] for Ca[sup 2+] of 1 to 2 [mu]m and a K[sub m] for ATP of 67 nm. Relative affinities of substrates, determined by competition experiments, were 0.075 [mu]m for ATP, 1 [mu]m for ADP, 100 [mu]m for ITP, and 250 [mu]m for GTP. Thapsigargin and cyclopiazonic acid, specific inhibitors of animal sarcoplasmic/endoplasmic reticulum Ca[sup 2+]-ATPase, had no effect on PE formation; erythrosin B inhibited with 50% inhibition at <0.1 [mu]m. Calmodulin (1 [mu]m) stimulated PE formation by 25%. The results indicate that the carrot 120-kD Ca[sup 2+]-ATPase is similar but not identical to animal plasma membrane-type Ca[sup 2+]-ATPase and yet is located on endomembranes, such as the endoplasmic reticulum. This type of Ca[sup 2+] pump may reside on the cortical endoplasmic reticulum, thought to play a major role in anchoring the cytoskeleton and in facilitating secretion. 34 refs., 9 figs., 3 tabs.

  16. The boron abundance of Procyon

    NASA Technical Reports Server (NTRS)

    Lemke, Michael; Lambert, David L.; Edvardsson, Bengt

    1993-01-01

    The B I 2496.8 A resonance line and HST/GHRS echelle spectra are used with model atmospheres and synthetic spectra to derive the B abundance of the F dwarfs Procyon (Alpha Canis Minoris), Theta Ursae Majoris, and Iota Pegasi. The B abundance of Theta UMa and Iota Peg is similar to that derived by Boesgaard and Heacox (1978) from the B II resonance line in spectra of A- and B-type stars. These two dwarfs show normal abundances of Li, Be, and B. Procyon, which is highly depleted in Li and Be, is depleted in B by a factor of at least 3. Comparison of the spectra of Procyon and the halo dwarf HD 140283 shows that the B abundance assigned by Duncan et al. (1992) to three halo dwarfs is not greatly overestimated as a result of contamination of the B I line by an unidentified line.

  17. Reflectance for an approximately one-dimensional rough surface that has rms roughness greater than a wavelength

    NASA Astrophysics Data System (ADS)

    Mendeleev, Vladimir Y.; Skovorod'ko, Sergey N.

    2004-02-01

    A relation between the intensity reflectances of approximately one-dimensional and one-dimensional rough surfaces within the diffraction solid angle in the specular direction for normal incidence is derived for an rms roughness greater than a wavelength. The relation shows that the reflectance of an approximately one-dimensional rough surface is proportional to the reflectance of a one-dimension rough surface. The validity of the derived relation is studied for an approximately one-dimensional rough steel surface with an rms roughness of 1.3 μm and a correlation length of 15.2 μm. The wavelength was 0.6328 μm and the angle of incidence was 4°. The reflectance of the rough steel surface was measured and estimated from the derived relation. Satisfactory agreement was found between the estimated and measured reflectance values.

  18. Endoplasmic reticulium protein profiling of heat-stressed Jurkat cells by one dimensional electrophoresis and liquid chromatography tandem mass spectrometry.

    PubMed

    Zhang, Xiulian; Kuramitsu, Yasuhiro; Ma, Aiguo; Zhang, Hui; Nakamura, Kazuyuki

    2016-08-01

    Proteomic study on membrane-integrated proteins in endoplasmic reticulum (ER) fractions was performed. In this study, we examined the effects of heat stress on Jurkat cells. The ER fractions were highly purified by differential centrifugation with sodium carbonate washing and acetone methanol precipitations. The ER membrane proteins were separated by one dimensional electrophoresis (1-DE), and some of the protein bands changed their abundance by heat stress, 12 of the 14 bands containing 40 and 60 ribosomal proteins whose expression level were decreased, on the contrary, 2 of the 14 bands containing ubiquitin and eukaryotic translation initiation factor 3 were increased. Heat treatment of human Jurkat cells led to an increase in the phosphorylation of PERK and eIF2α within 30 min of exposure. This was followed by an increase in the expression of the GRP78. Protein ubiquitination and subsequent degradation by the proteasome are important mechanisms regulating cell cycle, growth and differentiation, the result showed that heat stress enhanced ubiquitination modification of the microsomal proteins. The data of this study strongly suggest that heat treatment led to a significant reduction in protein expression and activated UPR, concomitant with protein hyperubiqutination in ER. PMID:25976506

  19. Capsaicin mediates apoptosis in human nasopharyngeal carcinoma NPC-TW 039 cells through mitochondrial depolarization and endoplasmic reticulum stress.

    PubMed

    Ip, S-W; Lan, S-H; Lu, H-F; Huang, A-C; Yang, J-S; Lin, J-P; Huang, H-Y; Lien, J-C; Ho, C-C; Chiu, C-F; Wood, Wg; Chung, J-G

    2012-06-01

    Capsaicin, a pungent compound found in hot chili peppers, has been reported to have antitumor activities in many human cancer cell lines, but the induction of precise apoptosis signaling pathway in human nasopharyngeal carcinoma (NPC) cells is unclear. Here, we investigated the molecular mechanisms of capsaicin-induced apoptosis in human NPC, NPC-TW 039, cells. Effects of capsaicin involved endoplasmic reticulum (ER) stress, caspase-3 activation and mitochondrial depolarization. Capsaicin-induced cytotoxic effects (cell death) through G0/G1 phase arrest and induction of apoptosis of NPC-TW 039 cells in a dose-dependent manner. Capsaicin treatment triggered ER stress by promoting the production of reactive oxygen species (ROS), increasing levels of inositol-requiring 1 enzyme (IRE1), growth arrest and DNA-damage-inducible 153 (GADD153) and glucose-regulated protein 78 (GRP78). Other effects included an increase in cytosolic Ca(2+), loss of the mitochondrial transmembrane potential (ΔΨ(m)), releases of cytochrome c and apoptosis-inducing factor (AIF), and activation of caspase-9 and -3. Furthermore, capsaicin induced increases in the ratio of Bax/Bcl-2 and abundance of apoptosis-related protein levels. These results suggest that ER stress- and mitochondria-mediated cell death is involved in capsaicin-induced apoptosis in NPC-TW 039 cells. PMID:21859781

  20. Gel-Free/Label-Free Proteomic Analysis of Endoplasmic Reticulum Proteins in Soybean Root Tips under Flooding and Drought Stresses.

    PubMed

    Wang, Xin; Komatsu, Setsuko

    2016-07-01

    Soybean is a widely cultivated crop; however, it is sensitive to flooding and drought stresses. The adverse environmental cues cause the endoplasmic reticulum (ER) stress due to accumulation of unfolded or misfolded proteins. To investigate the mechanisms in response to flooding and drought stresses, ER proteomics was performed in soybean root tips. The enzyme activity of NADH cytochrome c reductase was two-fold higher in the ER than other fractions, indicating that the ER was isolated with high purity. Protein abundance of ribosomal proteins was decreased under both stresses compared to control condition; however, the percentage of increased ribosomes was two-fold higher in flooding compared to drought. The ER proteins related to protein glycosylation and signaling were in response to both stresses. Compared to control condition, calnexin was decreased under both stresses; however, protein disulfide isomerase-like proteins and heat shock proteins were markedly decreased under flooding and drought conditions, respectively. Furthermore, fewer glycoproteins and higher levels of cytosolic calcium were identified under both stresses compared to control condition. These results suggest that reduced accumulation of glycoproteins in response to both stresses might be due to dysfunction of protein folding through calnexin/calreticulin cycle. Additionally, the increased cytosolic calcium levels induced by flooding and drought stresses might disturb the ER environment for proper protein folding in soybean root tips. PMID:27224218

  1. Yeast Ist2 Recruits the Endoplasmic Reticulum to the Plasma Membrane and Creates a Ribosome-Free Membrane Microcompartment

    PubMed Central

    Lorenz, Holger; Schwappach, Blanche; Seedorf, Matthias

    2012-01-01

    The endoplasmic reticulum (ER) forms contacts with the plasma membrane. These contacts are known to function in non-vesicular lipid transport and signaling. Ist2 resides in specific domains of the ER in Saccharomyces cerevisiae where it binds phosphoinositide lipids at the cytosolic face of the plasma membrane. Here, we report that Ist2 recruits domains of the yeast ER to the plasma membrane. Ist2 determines the amount of cortical ER present and the distance between the ER and the plasma membrane. Deletion of IST2 resulted in an increased distance between ER and plasma membrane and allowed access of ribosomes to the space between the two membranes. Cells that overexpress Ist2 showed an association of the nucleus with the plasma membrane. The morphology of the ER and yeast growth were sensitive to the abundance of Ist2. Moreover, Ist2-dependent effects on cytosolic pH and genetic interactions link Ist2 to the activity of the H+ pump Pma1 in the plasma membrane during cellular adaptation to the growth phase of the culture. Consistently we found a partial colocalization of Ist2-containing cortical ER and Pma1-containing domains of the plasma membrane. Hence Ist2 may be critically positioned in domains that couple functions of the ER and the plasma membrane. PMID:22808051

  2. The Role of Endoplasmic Reticulum Stress and Unfolded Protein Response in Atherosclerosis

    PubMed Central

    Ivanova, Ekaterina A.; Orekhov, Alexander N.

    2016-01-01

    Pathogenesis of atherosclerosis is a complex process involving several metabolic and signalling pathways. Accumulating evidence demonstrates that endoplasmic reticulum stress and associated apoptosis can be induced in the pathological conditions of atherosclerotic lesions and contribute to the disease progression. Notably, they may play a role in the development of vulnerable plaques that induce thrombosis and are therefore especially dangerous. Endoplasmic reticulum stress response is regulated by several signaling mechanisms that involve protein kinases and transcription factors. Some of these molecules can be regarded as potential therapeutic targets to improve treatment of atherosclerosis. In this review we will discuss the role of endoplasmic reticulum stress and apoptosis in atherosclerosis development in different cell types and summarize the current knowledge on potential therapeutic agents targeting molecules regulating these pathways and their possible use for anti-atherosclerotic therapy. PMID:26840309

  3. [Role of endoplasmic reticulum-plasma membrane junctions in intracellular calcium homeostasis and cardiovascular disease].

    PubMed

    Zhao, Ming; Jia, Hang-Huan; Xu, Man; Yu, Xiao-Jiang; Liu, Long-Zhu; Zang, Wei-Jin

    2016-08-25

    Calcium overload is one of the important mechanisms of cardiovascular disease. Endoplasmic reticulum is an important organelle which regulates intracellular calcium homeostasis by uptake, storage and mobilization of calcium. So it plays a critical role in regulation of intracellular calcium homeostasis. Endoplasmic reticulum, which is widely distributed in cytoplasm, has a large number of membrane junction sites. Recent studies have reported that these junction sites are distributed on plasma membrane and organelle membranes (mitochondria, lysosomes, Golgi apparatus, etc.), separately. They could form complexes to regulate calcium transport. In this review, we briefly outlined the recent research progresses of endoplasmic reticulum-plasma membrane junctions in intracellular calcium homeostasis and cardiovascular disease, which may offer a new strategy for prevention and treatment of cardiovascular disease. PMID:27546511

  4. Sequential NO production by mitochondria and endoplasmic reticulum during induced apoptosis.

    PubMed

    Bustamante, Juanita; Bersier, Geraldine; Badin, Romina Aron; Cymeryng, Cora; Parodi, Armando; Boveris, Alberto

    2002-05-01

    Early stages of rat thymocyte apoptosis measured as annexin-V positive events and induced by methylprednisolone (MPS), etoposide, and thapsigargin, showed a sequential increase in nitric oxide (NO) production by mitochondrial and endoplasmic reticulum membranes. Thapsigargin induced the highest NO production, a sevenfold increase as compared with untreated thymocytes, in mitochondrial and microsomal membranes. MPS and etoposide were equally effective in increasing NO production by mitochondrial membranes by a factor of 4-5, with only a slight increase in NO production by endoplasmic reticulum membranes. Western blot analysis of both types of membrane indicated that a nitric oxide synthase (NOS) isoenzyme is present in mitochondrial membranes and reacts with antibodies to i-NOS (type II), while reactivity to antibodies to e-NOS (type III) was restricted to endoplasmic reticulum. The participation of endoplasmic reticulum during apoptosis was further determined by alterations in UDP-Glucosyltransferase (UDP-GT) and NADPH cytochrome P450 reductase. Increased UDP-GT activity was observed after thapsigargin treatment, and no changes were found after treatment with etoposide or MPS. NADPH cytochrome P450 reductase activity markedly decreased during apoptosis, being stronger after thapsigargin treatment. The latest stage of the apoptotic process was measured by caspase activities. Caspase 3 activity was markedly increased by the three apoptosis inducers; caspase 6 was only activated by MPS and etoposide, while caspase 8 was not activated by any of these inducers. It is clear that mitochondria and endoplasmic reticulum are involved in thapsigargin induced thymocyte apoptosis. Meanwhile, other thymocyte apoptotic pathways, such as those induced by MPS or etoposide, seem to centrally involve mitochondria but not endoplasmic reticulum. PMID:12009851

  5. The Abundance of Iron-Peak Elements and the Dust Composition in eta Carinae: Manganese

    NASA Technical Reports Server (NTRS)

    Bautista, M. A.; Melendez, M.; Hartman, H.; Gull, T. R.; Lodders, K.

    2010-01-01

    We study the chemical abundances of the Strontium Filament found in the ejecta of (eta) Carinae. In particular, we derive the abundances of iron-peak elements front spectra of their singly ionized ions present in the optical/IR spectra. In this paper we analyze the spectrum of Mn II using a new non-LTE model for this system. In constructing this models we carried out theoretical calculations of radiative transition rates and electron impact excitation rate coefficients. We find that relative to Ni the gas phase abundance ratio of Mn is roughly solar, similar to the Cr abundance but in contrast to the large enhancements in the abundances of Sc and Ti. NVe interpret this result as an indication of non-equilibrium condensation in the ejecta of (eta) Carinae.

  6. Autophagosome Formation during Varicella-Zoster Virus Infection following Endoplasmic Reticulum Stress and the Unfolded Protein Response ▿ † ‡

    PubMed Central

    Carpenter, John E.; Jackson, Wallen; Benetti, Luca; Grose, Charles

    2011-01-01

    Autophagy is a recently recognized component of the life cycle of varicella-zoster virus (VZV). We have documented abundant autophagosome formation in skin vesicles (final site of virion assembly) from randomly selected cases of varicella and zoster. The fact that autophagy was an early event in the VZV replication cycle was documented by finding infected vesicle cells with the VZV IE62 protein confined to the nucleus. Next, we pursued studies in VZV-infected cultured cells to define whether autophagy was preceded by endoplasmic reticulum (ER) stress and the unfolded protein response (UPR). First, we demonstrated that autophagosome formation in infected cells closely resembled that seen after treatment of cells with tunicamycin, a potent initiator of ER stress. Second, we demonstrated a marked expansion of ER size in both VZV-infected cells and cells transfected with the predominant VZV glycoprotein complex gE/gI. An enlarged ER is critical evidence of ER stress, which in turn is relieved by the UPR. To this end, we documented the UPR by detecting the alternatively spliced form of the XBP1 protein as well as CHOP (C/EBP homologous protein), both transcriptional activators of other UPR genes in an ER stress-dependent manner. Because VZV does not encode inhibitors of autophagy, the above results suggested that autophagy was a common event in VZV-infected cells and that it was provoked at least in part by ER stress secondary to overly abundant VZV glycoprotein biosynthesis, which led to UPR activation in an attempt to maintain cellular homeostasis. PMID:21752906

  7. Spectral quantification of Southern Baltic seabed roughness

    NASA Astrophysics Data System (ADS)

    Szefler, K.; Tegowski, J.; Nowak, J.

    2012-12-01

    The work presents the fast and efficient tool for seafloor classification, where scales and shapes of geomorphological forms were taken into account. The precise bathymetry and seafloor texture was developed with multibeam echosounder at six different areas of size up to 10 by 20 km. This areas demonstrate typical geomorphological seafloor features of bottom relief at the southern Baltic Sea coastal waters. The acoustical measurements were accompanied by geological sampling and video inspection. High resolution mosaic maps were obtained as a result of multi-survey measurements with maximal spatial resolution of 0.05m. Such accuracy of the measurements allows to observe small geomorphologic forms as ripplemarks or pebbles. The most investigated polygons have bottom relief of polygenetic origin with relicts of periglacial forms together with contemporary forms of marine origin. In the studied areas different forms of sand accumulation were found, beginning with small ripplemarks ending at big sandy waves. In the seabed erosion zones the bottom surface is rough and varied with clearly formed embankments, abrasive platforms, inselbergs and stony gravely abrasive pavements on the bottom surface. Such geomorphic diversity of the bottom surface has allowed for development of consistent geomorphological classification system based mainly on spectral properties of seafloor roughness. Each analysed area was divided into squares (200 by 200 m) with an overlap between adjacent subareas of 75% a square size. Next, subdivided areas were spectrally transformed using a two dimensional fast Fourier transform (2D FFT). The spectral parameters as maximal value of spectral density function, spectral exponent and strength, spectral moments, mean frequency, spectral width and skewness for each characteristic type of bottom surface were determined relaying on the calculated 2D spectra. Moreover, other features characterised the corrugated surface as fractal dimension, radius of

  8. The density of the cell sap and endoplasm of Nitellopsis and Chara

    NASA Technical Reports Server (NTRS)

    Wayne, R.; Staves, M. P.

    1991-01-01

    We measured the densities of the cell sap, endoplasm and cell wall of Nitellopsis obtusa and Chara corallina using interference microscopy, refractometry, immersion refractometry, equilibrium sedimentation and chemical microanalysis techniques. These values are important for the determination of many rheological properties of the cytoplasm as well as for understanding buoyancy regulation, dispersal mechanisms and how cells respond to gravity. The average densities of the cell sap, endoplasm and cell wall are 1,006.9, 1,016.7 and 1,371 kg m-3 for Nitellopsis and 1,005.0, 1,013.9, and 1,355.3 kg m-3 for Chara.

  9. Wetting, spreading, and adsorption on randomly rough surfaces.

    PubMed

    Herminghaus, S

    2012-06-01

    The wetting properties of solid substrates with customary (i.e., macroscopic) random roughness are considered as a function of the microscopic contact angle of the wetting liquid and its partial pressure in the surrounding gas phase. Analytic expressions are derived which allow for any given lateral correlation function and height distribution of the roughness to calculate the wetting phase diagram, the adsorption isotherms, and to locate the percolation transition in the adsorbed liquid film. Most features turn out to depend only on a few key parameters of the roughness, which can be clearly identified. It is shown that a first-order transition in the adsorbed film thickness, which we term "Wenzel prewetting", occurs generically on typical roughness topographies, but is absent on purely Gaussian roughness. It is thereby shown that even subtle deviations from Gaussian roughness characteristics may be essential for correctly predicting even qualitative aspects of wetting. PMID:22661267

  10. Effect of surface roughness on flexural strength of veneer ceramics.

    PubMed

    Fischer, H; Schäfer, M; Marx, R

    2003-12-01

    The strength of ceramic restorations depends on the occlusal surface roughness of the veneering porcelain, which is influenced by the final preparation. The hypothesis of the study was that roughnesses below a critical microscopic defect size--based only on fracture mechanics considerations--also affect flexural strength. The bending failure stress was evaluated on standard specimens of 4 veneer ceramics with 4 different surfaces of defined roughnesses, respectively. A linear correlation was found between roughness and failure stress. A "roughness-free" failure stress value was predicted for each tested material. This theoretical value can represent the "true" strength of the respective ceramic material. We conclude from our results that the final preparation of a ceramic restoration is critical to the strength of the material, and that ceramic veneering materials can be compared more objectively with respect to their strength by means of roughness-free strength values. PMID:14630897

  11. Extreme ultraviolet mask substrate surface roughness effects on lithography patterning

    SciTech Connect

    George, Simi; Naulleau, Patrick; Salmassi, Farhad; Mochi, Iacopo; Gullikson, Eric; Goldberg, Kenneth; Anderson, Erik

    2010-06-21

    In extreme ultraviolet lithography exposure systems, mask substrate roughness induced scatter contributes to LER at the image plane. In this paper, the impact of mask substrate roughness on image plane speckle is explicitly evaluated. A programmed roughness mask was used to study the correlation between mask roughness metrics and wafer plane aerial image inspection. We find that the roughness measurements by top surface topography profile do not provide complete information on the scatter related speckle that leads to LER at the image plane. We suggest at wavelength characterization by imaging and/or scatter measurements into different frequencies as an alternative for a more comprehensive metrology of the mask substrate/multilayer roughness effects.

  12. Fine tuning the roughness of powder blasted surfaces

    NASA Astrophysics Data System (ADS)

    Wensink, Henk; Schlautmann, Stefan; Goedbloed, Martijn H.; Elwenspoek, Miko C.

    2002-09-01

    Powder blasting (abrasive jet machining) has recently been introduced as a bulk-micromachining technique for brittle materials. The surface roughness that is created with this technique is much higher (with a value of Ra between 1-2.5 μm) compared to general micromachining techniques. In this paper we study the roughness of powder blasted glass surfaces, and show how it depends on the process parameters. The roughness can also be changed after blasting by HF etching or by using a high-temperature anneal step. Roughness measurements and scanning electron microscopy images show the quantitative and qualitative changes in roughness. These post-processes will allow us to investigate the influence of surface roughness on the microsystem performance in future research.

  13. The Iron Abundance of IOTA Herculis From Ultraviolet Iron Lines

    NASA Astrophysics Data System (ADS)

    Grigsby, J.; Mulliss, C.; Baer, G.

    1995-03-01

    We have obtained (Adelman 1992, 1993, private comunication) coadded, high-resolution IUE spectra of Iota Herculis (B3 IV) in both short wavelength (SWP) and long wavelength (LWP) regions. The spectra span the ultraviolet spectrum from 110 - 300 nm and have a SNR of roughly 30 -50; they are described in Adelman et. al. (1993, ApJ 419, 276). Abundance indicators were 54 lines of Fe II and 26 lines of Fe III whose atomic parameters have been measured in the laboratory. LTE synthetic spectra for comparison with observations were produced with the Kurucz model atmosphere and spectral synthesis codes ATLAS9/SYNTHE (Kurucz 1979, ApJS 40,1; Kurucz and Avrett 1981, SAO Special Report 391). Model parameters were chosen from the literature: effective temperature = 17500 K, log g =3.75, v sin i= 11 km/s, and turbulent velocity = 0 km/s. (Peters and Polidan 1985, in IAU Symposium 111, ed. D. S. Hayes et al. (Dordrecht: Reidel), 417). We determined the equivalent widths of the chosen lines by fitting gaussian profiles to the lines and by measuring the equivalent widths of the gaussians. We derived abundances by fitting a straight line to a plot of observed equivalent widths vs. synthetic equivalent widths; we adjusted the iron abundance of the models until a slope of unity was achieved. The abundances derived from the different ionization stages are in agreement: Fe II lines indicate an iron abundance that is 34 +15/-10% the solar value([Fe/H]=-0.47 +0.16-0.15dex), while from Fe III lines we obtain 34 +/- 10% ([Fe/H]=-0.47 +0.11/-0.15 dex). A search of the literature suggests that no previous investigations of this star's iron abundance have found agreement between the different ionization stages. We thank Saul Adelman for his generous assistance, and the Faculty Research Fund Board of Wittenberg University for support of this research.

  14. Shape, Topography and Roughness of 25143 Itokawa

    NASA Astrophysics Data System (ADS)

    Cheng, A. F.; Barnouin-Jha, O. S.

    2007-12-01

    The recent visit of the Hayabusa spacecraft to the small near-Earth asteroid (NEA) 25143 Itokawa yielded the surprising discovery that Itokawa was not an intact object but a low density, gravitationally accumulated, rubble pile. This contrasts with the finding, from the only other NEA visited by an asteroid lander, that 433 Eros was an intact object and not a rubble pile. Eros was visited by the NEAR Shoemaker spacecraft which landed in 2001. Accurately co-registered, high resolution imager and lidar data from NEAR Shoemaker have demonstrated the fractal properties of small scale surface topography on Eros, where boulders tend to be found on the tops of long ridges, consistent with the presence of an underlying globally coherent structure. However, Itokawa is a rubble pile with a fundamentally different collisional history. Here we analyze co-registered, high resolution lidar and imager data from Itokawa, obtained by Hayabusa, to explore fractal properties and surface roughness distributions on Itokawa for comparison with the results from Eros.

  15. Thermodynamics of capillary adhesion between rough surfaces.

    PubMed

    de Boer, M P; de Boer, P C T

    2007-07-01

    According to the Dupré equation, the work of adhesion is equal to the surface energy difference in the separated versus the joined materials minus an interfacial energy term. However, if a liquid is at the interface between two solid materials, evaporation or condensation takes place under equilibrium conditions. The resulting matter exchange is accompanied by heat flow, and can reduce or increase the work of adhesion. Accounting for the energies requires an open-system control volume analysis based on the first law of thermodynamics. Depending on whether evaporation or condensation occurs during separation, a work term that is negative or positive must be added to the surface energy term to calculate the work of adhesion. We develop and apply this energy balance to several different interface geometries and compare the work of adhesion to the surface energy created. The model geometries include a sphere on a flat with limiting approximations and also with an exact solution, a circular disc, and a combination of these representing a rough interface. For the sphere on a flat, the work of adhesion is one half the surface energy created if equilibrium is maintained during the pull-off process. PMID:17368659

  16. Terahertz NDE for Metallic Surface Roughness Evaluation

    NASA Technical Reports Server (NTRS)

    Madaras, Eric I.; Anastasi, Robert F.

    2006-01-01

    Metallic surface roughness in a nominally smooth surface is a potential indication of material degradation or damage. When the surface is coated or covered with an opaque dielectric material, such as paint or insulation, then inspecting for surface changes becomes almost impossible. Terahertz NDE is a method capable of penetrating the coating and inspecting the metallic surface. The terahertz frequency regime is between 100 GHz and 10 THz and has a free space wavelength of 300 micrometers at 1 THz. Pulsed terahertz radiation, can be generated and detected using optical excitation of biased semiconductors with femtosecond laser pulses. The resulting time domain signal is 320 picoseconds in duration. In this application, samples are inspected with a commercial terahertz NDE system that scans the sample and generates a set of time-domain signals that are a function of the backscatter from the metallic surface. Post processing is then performed in the time and frequency domains to generate C-scan type images that show scattering effects due to surface non-uniformity.

  17. Intrusion detection using rough set classification.

    PubMed

    Zhang, Lian-hua; Zhang, Guan-hua; Zhang, Jie; Bai, Ying-cai

    2004-09-01

    Recently machine learning-based intrusion detection approaches have been subjected to extensive researches because they can detect both misuse and anomaly. In this paper, rough set classification (RSC), a modern learning algorithm, is used to rank the features extracted for detecting intrusions and generate intrusion detection models. Feature ranking is a very critical step when building the model. RSC performs feature ranking before generating rules, and converts the feature ranking to minimal hitting set problem addressed by using genetic algorithm (GA). This is done in classical approaches using Support Vector Machine (SVM) by executing many iterations, each of which removes one useless feature. Compared with those methods, our method can avoid many iterations. In addition, a hybrid genetic algorithm is proposed to increase the convergence speed and decrease the training time of RSC. The models generated by RSC take the form of "IF-THEN" rules, which have the advantage of explication. Tests and comparison of RSC with SVM on DARPA benchmark data showed that for Probe and DoS attacks both RSC and SVM yielded highly accurate results (greater than 99% accuracy on testing set). PMID:15323002

  18. Backscatter from a periodic rough surface at near grazing incidence

    NASA Technical Reports Server (NTRS)

    Dominek, A. K.; Shamansky, H. T.

    1987-01-01

    The effect of periodic surface roughness on the radar cross section (RCS) was studied. The surface roughness was formed by a small sinusoidal variation in a planar surface. RCS measurements were obtained for two different sinusoidal variations near grazing incidence for both principle polarizations. Significant grating lobes were observed in the measurements which directly correspond to the roughness characteristics. A physical optics solution was generated and compared to the measurements with reasonable agreement.

  19. Incorporating Skew into RMS Surface Roughness Probability Distribution

    NASA Technical Reports Server (NTRS)

    Stahl, Mark T.; Stahl, H. Philip.

    2013-01-01

    The standard treatment of RMS surface roughness data is the application of a Gaussian probability distribution. This handling of surface roughness ignores the skew present in the surface and overestimates the most probable RMS of the surface, the mode. Using experimental data we confirm the Gaussian distribution overestimates the mode and application of an asymmetric distribution provides a better fit. Implementing the proposed asymmetric distribution into the optical manufacturing process would reduce the polishing time required to meet surface roughness specifications.

  20. Transport of estradiol-17β-glucuronide, estrone-3-sulfate and taurocholate across the endoplasmic reticulum membrane: evidence for different transport systems.

    PubMed

    Wlcek, Katrin; Hofstetter, Lia; Stieger, Bruno

    2014-03-01

    Important reactions of drug metabolism, including UGT mediated glucuronidation and steroidsulfatase mediated hydrolysis of sulfates, take place in the endoplasmic reticulum (ER) of hepatocytes. Consequently, UGT generated glucuronides, like estradiol-17β-glucuronide, have to be translocated back into the cytoplasm to reach their site of excretion. Also steroidsulfatase substrates, including estrone-3-sulfate, have to cross the ER membrane to reach their site of hydrolysis. Based on their physicochemical properties such compounds are not favored for passive diffusion and therefore likely necessitate transport system(s) to cross the ER membrane in either direction. The current study aims to investigate the transport of taurocholate, estradiol-17β-glucuronide, and estrone-3-sulfate in smooth (SER) and rough (RER) endoplasmic reticulum membrane vesicles isolated from Wistar and TR(-) rat liver. Time-dependent and bidirectional transport was demonstrated for taurocholate, showing higher uptake rates in SER than RER vesicles. For estradiol-17β-glucuronide a fast time-dependent efflux with similar efficiencies from SER and RER but no clear protein-mediated uptake was shown, indicating an asymmetric transport system for this substrate. Estrone-3-sulfate uptake was time-dependent and higher in SER than in RER vesicles. Inhibition of steroidsulfatase mediated estrone-3-sulfate hydrolysis decreased estrone-3-sulfate uptake but had no effect on taurocholate or estradiol-17β-glucuronide transport. Based on inhibition studies and transport characteristics, three different transport mechanisms are suggested to be involved in the transport of taurocholate, estrone-3-sulfate and estradiol-17β-glucuronide across the ER membrane. PMID:24406246

  1. Heat Transfer Variation on Protuberances and Surface Roughness Elements

    NASA Technical Reports Server (NTRS)

    Henry, Robert C.; Hansman, R. John, Jr.; Breuer, Kenneth S.

    1995-01-01

    In order to determine the effect of surface irregularities on local convective heat transfer, the variation in heat transfer coefficients on small (2-6 mm diam) hemispherical roughness elements on a flat plate has been studied in a wind funnel using IR techniques. Heat transfer enhancement was observed to vary over the roughness elements with the maximum heat transfer on the upstream face. This heat transfer enhancement increased strongly with roughness size and velocity when there was a laminar boundary layer on the plate. For a turbulent boundary layer, the heat transfer enhancement was relatively constant with velocity, but did increase with element size. When multiple roughness elements were studied, no influence of adjacent roughness elements on heat transfer was observed if the roughness separation was greater than approximately one roughness element radius. As roughness separation was reduced, less variation in heat transfer was observed on the downstream elements. Implications of the observed roughness enhanced heat transfer on ice accretion modeling are discussed.

  2. Prediction of Frictional Drag over Rough Walls using Surface Statistics

    NASA Astrophysics Data System (ADS)

    Flack, Karen; Schultz, Michael

    2014-11-01

    Although the frictional drag of rough-wall-bounded flows has been studied extensively, several practical questions remain largely unresolved. First, the relationship between the shape of the roughness function in transitionally-rough regime and the surface topography which gives rise to it are not well understood. Second, it is not completely clear which textural parameters best describe a rough surface in a hydraulic sense. Furthermore, the range of roughness wavelengths that influence the skin-friction is not well established. The focus of the present work is to attempt to address these questions with a systematic study of the skin-friction of fifteen rough surfaces that were generated by grit blasting. The hydrodynamic tests were carried out over a large Reynolds number range. Five surfaces were prepared by grit blasting with a single scale blast media. These underwent hydrodynamic testing and were subsequently blasted with secondary and tertiary scale media in order to investigate the role that the incorporation of additional roughness length scales plays in determining the shape of the roughness function and the resulting hydraulic length scale. The presentation will focus on the appropriate statistical scales for prediction of the roughness function. Spatial filtering prior to the calculation of surface statistics will also be discussed. Work supported by the Office of Naval Research.

  3. Dynamic evolution of interface roughness during friction and wear processes.

    PubMed

    Kubiak, K J; Bigerelle, M; Mathia, T G; Dubois, A; Dubar, L

    2014-01-01

    Dynamic evolution of surface roughness and influence of initial roughness (S(a) = 0.282-6.73 µm) during friction and wear processes has been analyzed experimentally. The mirror polished and rough surfaces (28 samples in total) have been prepared by surface polishing on Ti-6Al-4V and AISI 1045 samples. Friction and wear have been tested in classical sphere/plane configuration using linear reciprocating tribometer with very small displacement from 130 to 200 µm. After an initial period of rapid degradation, dynamic evolution of surface roughness converges to certain level specific to a given tribosystem. However, roughness at such dynamic interface is still increasing and analysis of initial roughness influence revealed that to certain extent, a rheology effect of interface can be observed and dynamic evolution of roughness will depend on initial condition and history of interface roughness evolution. Multiscale analysis shows that morphology created in wear process is composed from nano, micro, and macro scale roughness. Therefore, mechanical parts working under very severe contact conditions, like rotor/blade contact, screws, clutch, etc. with poor initial surface finishing are susceptible to have much shorter lifetime than a quality finished parts. PMID:23440686

  4. Solar and stellar photospheric abundances

    NASA Astrophysics Data System (ADS)

    Allende Prieto, Carlos

    2016-07-01

    The determination of photospheric abundances in late-type stars from spectroscopic observations is a well-established field, built on solid theoretical foundations. Improving those foundations to refine the accuracy of the inferred abundances has proven challenging, but progress has been made. In parallel, developments on instrumentation, chiefly regarding multi-object spectroscopy, have been spectacular, and a number of projects are collecting large numbers of observations for stars across the Milky Way and nearby galaxies, promising important advances in our understanding of galaxy formation and evolution. After providing a brief description of the basic physics and input data involved in the analysis of stellar spectra, a review is made of the analysis steps, and the available tools to cope with large observational efforts. The paper closes with a quick overview of relevant ongoing and planned spectroscopic surveys, and highlights of recent research on photospheric abundances.

  5. OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm.

    PubMed

    Ohta, Masaru; Takaiwa, Fumio

    2015-08-01

    Large amounts of seed storage proteins (SSPs) are produced in the maturing endosperm of rice seeds. Rice SSPs are synthesized as secretory proteins on the rough endoplasmic reticulum (ER), and are transported and deposited into protein complexes called protein bodies (PB-I and PB-II). Due to the high production of SSPs, unfolded SSPs may be generated during this process. However, it was previously unclear how such unfolded proteins are selected among synthesized products and removed from the ER to maintain protein quality in the endosperm. Since Hrd3/SEL1L recognizes unfolded proteins in yeast and mammalian protein quality control systems, the role of OsHrd3 in protein quality control in rice endosperm was investigated. Co-immunoprecipitation experiments demonstrated that OsHrd3 interacts with components of the Hrd1 ubiquitin ligase complex such as OsOS-9 and OsHrd1 in rice protoplasts. Endosperm-specific suppression of OsHrd3 in transgenic rice reduced the levels of polyubiquitinated proteins and resulted in unfolded protein responses (UPRs) in the endosperm, suggesting that OsHrd3-mediated polyubiquitination plays an important role in ER quality control. It was found that a cysteine-rich 13kDa prolamin, RM1, was polyubiquitinated in wild-type (WT) seeds but not in OsHrd3 knockdown (KD) seeds. RM1 formed aberrant aggregates that were deposited abnormally in OsHrd3 KD seeds, resulting in deformed PB-I. Therefore, the quality of protein bodies is maintained by polyubiquitination of unfolded SSPs through the Hrd1 ubiquitin ligase system in rice endosperm. PMID:25977235

  6. OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm

    PubMed Central

    Ohta, Masaru; Takaiwa, Fumio

    2015-01-01

    Large amounts of seed storage proteins (SSPs) are produced in the maturing endosperm of rice seeds. Rice SSPs are synthesized as secretory proteins on the rough endoplasmic reticulum (ER), and are transported and deposited into protein complexes called protein bodies (PB-I and PB-II). Due to the high production of SSPs, unfolded SSPs may be generated during this process. However, it was previously unclear how such unfolded proteins are selected among synthesized products and removed from the ER to maintain protein quality in the endosperm. Since Hrd3/SEL1L recognizes unfolded proteins in yeast and mammalian protein quality control systems, the role of OsHrd3 in protein quality control in rice endosperm was investigated. Co-immunoprecipitation experiments demonstrated that OsHrd3 interacts with components of the Hrd1 ubiquitin ligase complex such as OsOS-9 and OsHrd1 in rice protoplasts. Endosperm-specific suppression of OsHrd3 in transgenic rice reduced the levels of polyubiquitinated proteins and resulted in unfolded protein responses (UPRs) in the endosperm, suggesting that OsHrd3-mediated polyubiquitination plays an important role in ER quality control. It was found that a cysteine-rich 13kDa prolamin, RM1, was polyubiquitinated in wild-type (WT) seeds but not in OsHrd3 knockdown (KD) seeds. RM1 formed aberrant aggregates that were deposited abnormally in OsHrd3 KD seeds, resulting in deformed PB-I. Therefore, the quality of protein bodies is maintained by polyubiquitination of unfolded SSPs through the Hrd1 ubiquitin ligase system in rice endosperm. PMID:25977235

  7. Robust Abundance Estimation in Animal Abundance Surveys with Imperfect Detection

    EPA Science Inventory

    Surveys of animal abundance are central to the conservation and management of living natural resources. However, detection uncertainty complicates the sampling process of many species. One sampling method employed to deal with this problem is depletion (or removal) surveys in whi...

  8. Coronal abundances and their variation

    NASA Technical Reports Server (NTRS)

    Saba, Julia L. R.

    1995-01-01

    This contract supports the investigation of elemental abundances in the solar corona, principally through analysis of high-resolution soft X-ray spectra from the Flat Crystal Spectrometer on the Solar Maximum Mission. The goals of the study are a characterization of the mean values of relative abundances of elements accessible in the FCS data, and information on the extent and circumstances of their variability. This report is a summation of the data analysis and reporting activities which occurred during the period of 15 April 1994 to 15 April 1995.

  9. The solar abundance of beryllium

    NASA Technical Reports Server (NTRS)

    Ross, J. E.; Aller, L. H.

    1974-01-01

    The solar abundance of beryllium is deduced from high-resolution Kitt Peak observations of the 3130.43- and 3131.08-A lines of Be II interpreted by the method of spectrum synthesis. The results are in good agreement with those previously obtained by Grevesse (1968) and by Hauge and Engvold (1968) and indicate that in the photospheric layers, beryllium is depleted below the chondritic value by a factor of about two. It is found that the beryllium abundance is equal to logN(Be)/N(H) + 12 = 1.08 plus or minus 0.05.

  10. Chemical Abundances of Symbiotic Giants

    NASA Astrophysics Data System (ADS)

    Gałan, C.; Mikołajewska, J.; Hinkle, K. H.; Joyce, R. R.

    2015-12-01

    High resolution (R ˜ 50000), near-IR spectra were used to measure photospheric abundances of CNO and elements around the iron peak for 24 symbiotic giants. Spectrum synthesis was employed using local thermal equilibrium and hydrostatic model atmospheres. The metallicities are distributed in a wide range with maximum around [Fe/H] ˜-0.4 - - 0.3 dex. Enrichment in 14N indicates that all the sample giants have experienced the first dredge-up. The relative abundance of [Ti/Fe] is generally large in red symbiotic systems.

  11. Coronal Abundances and Their Variation

    NASA Technical Reports Server (NTRS)

    Saba, Julia L. R.

    1996-01-01

    This contract supported the investigation of elemental abundances in the solar corona, principally through analysis of high-resolution soft X-ray spectra from the Flat Crystal Spectrometer on NASA's Solar Maximum Mission. The goals of the study were a characterization of the mean values of relative abundances of elements accessible in the FCS data, and information on the extent and circumstances of their variability. This is the Final Report, summarizing the data analysis and reporting activities which occurred during the period of performance, June 1993 - December 1996.

  12. SOLAR MODELS WITH REVISED ABUNDANCE

    SciTech Connect

    Bi, S. L.; Li, T. D.; Yang, W. M.; Li, L. H.

    2011-04-20

    We present new solar models in which we use the latest low abundances and further include the effects of rotation, magnetic fields, and extra-mixing processes. We assume that the extra-element mixing can be treated as a diffusion process, with the diffusion coefficient depending mainly on the solar internal configuration of rotation and magnetic fields. We find that such models can well reproduce the observed solar rotation profile in the radiative region. Furthermore, the proposed models can match the seismic constraints better than the standard solar models, also when these include the latest abundances, but neglect the effects of rotation and magnetic fields.

  13. Functional responses of the rough-legged buzzard in a multi-prey system.

    PubMed

    Hellström, P; Nyström, J; Angerbjörn, A

    2014-04-01

    The functional response is a key element of predator-prey interactions. Basic functional response theory explains foraging behavior of individual predators, but many empirical studies of free-ranging predators have estimated functional responses by using population-averaged data. We used a novel approach to investigate functional responses of an avian predator (the rough legged-buzzard Buteo lagopus Pontoppidan, 1763) to intra-annual spatial variation in rodent density in subarctic Sweden, using breeding pairs as the sampling unit. The rough-legged buzzards responded functionally to Norwegian lemmings (Lemmus lemmus L. 1758), grey-sided voles (Myodes rufocanus Sundevall, 1846) and field voles (Microtus agrestis L. 1761), but different rodent prey were not utilised according to relative abundance. The functional response to Norwegian lemmings was a steep type II curve and a more shallow type III response to grey-sided voles. The different shapes of these two functional responses were likely due to combined effects of differences between lemmings and grey-sided voles in habitat utilisation, anti-predator behaviour and size-dependent vulnerability to predation. Diet composition changed less than changes in relative prey abundance, indicating negative switching, with high disproportional use of especially lemmings at low relative densities. Our results suggest that lemmings and voles should be treated separately in future empirical and theoretical studies in order to better understand the role of predation in this study system. PMID:24448699

  14. Shear Stress Partitioning in Airflow over Rough Surfaces: Roughness Form Effects and Influence on the Distribution of Shear Stress

    NASA Astrophysics Data System (ADS)

    Gillies, J. A.; Nickling, W. G.; King, J.

    2004-12-01

    Roughness elements distributed across a surface can significantly decrease the entrainment and transport of underlying fine-grained sediments by wind. The parameterization of roughness effects on wind erosion thresholds and sediment transport is critical to the development of models that can provide realistic predictions of sediment thresholds and fluxes due to wind erosion. Raupach et al. (1993) present a model for predicting the protective role of roughness elements in terms of a threshold friction velocity ratio as a function of the roughness geometry and the aerodynamic properties of the surface and roughness elements. The predictive capacity of this model remains uncertain and the work presented here represents part of an on-going effort of our group to improve the parameterization of the Raupach et al. (1993) model. To gain additional understanding of how roughness elements influence the magnitude and nature of the shear stress acting on the surface among the elements and evaluate strength and weaknesses of the roughness density parameter to characterize these effects, a wind tunnel study using model roughness arrays of similar roughness density composed of cube-shaped elements of different length dimensions was undertaken. Roughness density is defined as the total frontal area of all the elements to the total surface area that they occupy. Shear stress in the above element air flow was determined from vertical wind speed profile measurements. Point measurements of near surface shear stresses within the roughness array were made with simple omni-directional skin friction meters in order to investigate the partitioning of shear stress to the intervening surface. The results suggest that the roughness density parameter has severe limitations in describing the shear stress partitioning for these regularly arrayed rough surfaces. For surfaces with identical roughness densities, the surface composed of more and smaller elements was observed to have average and

  15. ALUMINUM ALTERS CALCIUM TRANSPORT IN PLASMA MEMBRANE AND ENDOPLASMIC RETICULUM FROM RAT BRAIN

    EPA Science Inventory

    Calcium is actively transported into intracellular organelles and out of the cytoplasm by Ca2+/Mg2+-ATPases located in the endoplasmic reticulum and plasma membranes. he effects of aluminum on calcium transport were examined in the adult rat brain. 5Ca-uptake was examined in micr...

  16. Bright fluorogenic squaraines with tuned cell entry for selective imaging of plasma membrane vs. endoplasmic reticulum.

    PubMed

    Collot, Mayeul; Kreder, Rémy; Tatarets, Anatoliy L; Patsenker, Leonid D; Mely, Yves; Klymchenko, Andrey S

    2015-12-14

    A rational design of squaraine dyes with lipophilic and zwitterionic groups tunes cell entry, allowing for selective far-red/near-infrared imaging of plasma membrane vs. endoplasmic reticulum. They exhibit up to 110-fold fluorescence enhancement in biomembranes and enable cellular imaging at 1 nM concentration, which make them the brightest membrane probes to date. PMID:26455447

  17. Chlorhexidine-induced apoptosis or necrosis in L929 fibroblasts: A role for endoplasmic reticulum stress

    SciTech Connect

    Faria, Gisele; Cardoso, Cristina R.B.; Larson, Roy E.; Silva, Joao S.; Rossi, Marcos A.

    2009-01-15

    Chlorhexidine (CHX), widely used as antiseptic and therapeutic agent in medicine and dentistry, has a toxic effect both in vivo and in vitro. The intrinsic mechanism underlying CHX-induced cytotoxicity in eukaryotic cells is, however, still unknown. A recent study from our laboratory has suggested that CHX may induce death in cultured L929 fibroblasts via endoplasmic reticulum (ER) stress. This hypothesis was further tested by means of light and electron microscopy, quantification of apoptosis and necrosis by flow cytometry, fluorescence visualization of the cytoskeleton and endoplasmic reticulum, and evaluation of the expression of 78-kDa glucose-regulated protein 78 (Grp78), a marker of activation of the unfolded protein response (UPR) in cultured L929 fibroblasts. Our finding showing increased Grp 78 expression in CHX-treated cells and the results of flow cytometry, cytoskeleton and endoplasmic reticulum fluorescence visualization, and scanning and transmission electron microscopy allowed us to suggest that CHX elicits accumulation of proteins in the endoplasmic reticulum, which causes ER overload, resulting in ER stress and cell death either by necrosis or apoptosis. It must be pointed out, however, that this does not necessarily mean that ER stress is the only way that CHX kills L929 fibroblasts, but rather that ER stress is an important target or indicator of cell death induced by this drug.

  18. THE SOLAR FLARE IRON ABUNDANCE

    SciTech Connect

    Phillips, K. J. H.; Dennis, B. R. E-mail: Brian.R.Dennis@nasa.gov

    2012-03-20

    The abundance of iron is measured from emission line complexes at 6.65 keV (Fe line) and 8 keV (Fe/Ni line) in RHESSI X-ray spectra during solar flares. Spectra during long-duration flares with steady declines were selected, with an isothermal assumption and improved data analysis methods over previous work. Two spectral fitting models give comparable results, viz., an iron abundance that is lower than previous coronal values but higher than photospheric values. In the preferred method, the estimated Fe abundance is A(Fe) = 7.91 {+-} 0.10 (on a logarithmic scale, with A(H) = 12) or 2.6 {+-} 0.6 times the photospheric Fe abundance. Our estimate is based on a detailed analysis of 1898 spectra taken during 20 flares. No variation from flare to flare is indicated. This argues for a fractionation mechanism similar to quiet-Sun plasma. The new value of A(Fe) has important implications for radiation loss curves, which are estimated.

  19. Interactions between surface roughness and airflow turbulence affecting drying dynamics of rough porous surfaces

    NASA Astrophysics Data System (ADS)

    Haghighi, Erfan; Kirchner, James; Or, Dani

    2016-04-01

    Evaporative drying of porous surfaces interacting with turbulent airflows is common in various industrial and natural applications. The intrinsic relief and roughness of natural porous surfaces are likely to influence the structure of interacting turbulent airflow boundary layers, and thus affect rates and patterns of heat and vapor fluxes from the surface. These links have been formalized in new mechanistic models that consider intermittent and localized turbulence-induced boundary layers, resulting in rich surface evaporation and energy exchange dynamics. The models were evaluated experimentally by systematically varying surface roughness elements in drying experiments of wavy and bluff-body covered sand surfaces in a wind tunnel. Thermal infrared signatures of localized evaporative fluxes as well as mean evaporative mass losses were recorded. The resulting patterns were in good agreement with model predictions for local and surface averaged turbulent exchange rates. Experimental and theoretical results suggest that evaporative water losses from wavy sand surfaces can be either enhanced or suppressed (relative to a flat surface), due to the complex interplay between the local boundary layer thickness and internal limitations on water flow to the evaporating surface. For sand surfaces covered by isolated cylindrical elements (bluff bodies), model predictions and measurements show persistent enhancement of evaporative fluxes from bluff-rough surfaces compared to a flat surface under similar conditions. This enhancement is attributed to the formation of vortices that thin the boundary layer over part of the interacting surface footprint. The implications of this study for interpreting and upscaling evapotranspiration rates from terrestrial surfaces will be discussed.

  20. Actinide abundances in ordinary chondrites

    USGS Publications Warehouse

    Hagee, B.; Bernatowicz, T.J.; Podosek, F.A.; Johnson, M.L.; Burnett, D.S.; Tatsumoto, M.

    1990-01-01

    Measurements of 244Pu fission Xe, U, Th, and light REE (LREE) abundances, along with modal petrographic determinations of phosphate abundances, were carried out on equilibrated ordinary chondrites in order to define better the solar system Pu abundance and to determine the degree of variation of actinide and LREE abundances. Our data permit comparison of the directly measured Pu/ U ratio with that determined indirectly as (Pu/Nd) ?? (Nd/U) assuming that Pu behaves chemically as a LREE. Except for Guaren??a, and perhaps H chondrites in general, Pu concentrations are similar to that determined previously for St. Se??verin, although less precise because of higher trapped Xe contents. Trapped 130Xe 136Xe ratios appear to vary from meteorite to meteorite, but, relative to AVCC, all are similar in the sense of having less of the interstellar heavy Xe found in carbonaceous chondrite acid residues. The Pu/U and Pu/Nd ratios are consistent with previous data for St. Se??verin, but both tend to be slightly higher than those inferred from previous data on Angra dos Reis. Although significant variations exist, the distribution of our Th/U ratios, along with other precise isotope dilution data for ordinary chondrites, is rather symmetric about the CI chondrite value; however, actinide/(LREE) ratios are systematically lower than the CI value. Variations in actinide or LREE absolute and relative abundances are interpreted as reflecting differences in the proportions and/or compositions of more primitive components (chondrules and CAI materials?) incorporated into different regions of the ordinary chondrite parent bodies. The observed variations of Th/U, Nd/U, or Ce/U suggest that measurements of Pu/U on any single equilibrated ordinary chondrite specimen, such as St. Se??verin, should statistically be within ??20-30% of the average solar system value, although it is also clear that anomalous samples exist. ?? 1990.

  1. Characteristics of density currents over regular and irregular rough surfaces

    NASA Astrophysics Data System (ADS)

    Bhaganagar, K.

    2013-12-01

    Direct numerical simulation is used as a tool to understand the effect of surface roughness on the propagation of density currents. Simulations have been performed for lock-exchange flow with gate separating the dense and the lighter fluid. As the lock is released the dense fluid collapses with the lighter fluid on the top, resulting in formation of horizontally evolving density current. The talk will focus on the fundamental differences between the propagation of the density current over regular and irregular rough surfaces. The flow statistics and the flow structures are discussed. The results have revealed the spacing between the roughness elements is an important factor in classifying the density currents. The empirical relations of the front velocity and location for the dense and sparse roughness have been evaluated in terms of the roughness height, spacing between the elements and the initial amount of lock fluid. DNS results for a dense current flowing over a (a) smooth and (b) rough bottom with egg-carton roughness elements in a regular configuration. In these simulations the lock-exchange box is located in the middle of the channel and has two gates which allow two dense currents to be generated, one moving to the right and one to the left side of the channel. Note how the dense current interface presents smaller structures when over a rough bottom (right).

  2. Improvement in Storage Stability of Infrared Dried Rough Rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The objective of this study was to develop infrared drying (IRD) method to improve the stability of physicochemical properties of rough rice during storage. The effect of IRD on the physicochemical properties of stored rough rice was compared with that of hot air drying (HAD) and ambient air drying ...

  3. 7 CFR 51.1014 - Excessively rough texture.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 2 2011-01-01 2011-01-01 false Excessively rough texture. 51.1014 Section 51.1014 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE (Standards... texture. Excessively rough texture means that the skin is badly ridged or very decidedly lumpy....

  4. 7 CFR 51.1014 - Excessively rough texture.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 2 2012-01-01 2012-01-01 false Excessively rough texture. 51.1014 Section 51.1014 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE (Standards... texture. Excessively rough texture means that the skin is badly ridged or very decidedly lumpy....

  5. Theoretical model for the wetting of a rough surface.

    PubMed

    Hay, K M; Dragila, M I; Liburdy, J

    2008-09-15

    Many applications would benefit from an understanding of the physical mechanism behind fluid movement on rough surfaces, including the movement of water or contaminants within an unsaturated rock fracture. Presented is a theoretical investigation of the effect of surface roughness on fluid spreading. It is known that surface roughness enhances the effects of hydrophobic or hydrophilic behavior, as well as allowing for faster spreading of a hydrophilic fluid. A model is presented based on the classification of the regimes of spreading that occur when fluid encounters a rough surface: microscopic precursor film, mesoscopic invasion of roughness and macroscopic reaction to external forces. A theoretical relationship is developed for the physical mechanisms that drive mesoscopic invasion, which is used to guide a discussion of the implications of the theory on spreading conditions. Development of the analytical equation is based on a balance between capillary forces and frictional resistive forces. Chemical heterogeneity is ignored. The effect of various methods for estimating viscous dissipation is compared to available data from fluid rise on roughness experiments. Methods that account more accurately for roughness shape better explain the data as they account for more surface friction; the best fit was found for a hydraulic diameter approximation. The analytical solution implies the existence of a critical contact angle that is a function of roughness geometry, below which fluid will spread and above which fluid will resist spreading. The resulting equation predicts movement of a liquid invasion front with a square root of time dependence, mathematically resembling a diffusive process. PMID:18586259

  6. Improvement in storage stability of infrared dried rough rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The objective of this study was to develop infrared drying (IRD) method to improve the stability of physicochemical properties of rough rice during storage. The effect of IRD on the physicochemical properties of stored rough rice was compared with that of hot air drying (HAD) and ambient air drying ...

  7. Estimating aerodynamic resistance of rough surfaces from angular reflectance

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Current wind erosion and dust emission models neglect the heterogeneous nature of surface roughness and its geometric anisotropic effect on aerodynamic resistance, and over-estimate the erodible area by assuming it is not covered by roughness elements. We address these shortfalls with a new model wh...

  8. Quantification of soil surface roughness evolution under simulated rainfall

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Soil surface roughness is commonly identified as one of the dominant factors governing runoff and interrill erosion. The objective of this study was to compare several existing soil surface roughness indices and to test the Revised Triangular Prism surface area Method (RTPM) as a new approach to cal...

  9. Rough surface improves stability of air- sounding balloons

    NASA Technical Reports Server (NTRS)

    Scoggins, J. R.

    1965-01-01

    Aerodynamic stability of balloons used for measuring the intensity and direction of atmospheric winds at various elevations is improved by incorporating a rough surface on the balloons. The rough-surfaced balloon is useful for collecting wind profiles and other meteorological data.

  10. Counterintuitive MCNPX Results for Scintillator Surface Roughness Effect

    SciTech Connect

    2012-08-12

    We have reported on our recent MCNPX simulation results of energy deposition for a group of 8 scintillation detectors, coupled with various rough surface patterns. The MCNPX results generally favored the detectors with various rough surface patterns. The observed MCNPX results are not fully explained by this work.

  11. 7 CFR 51.1014 - Excessively rough texture.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 2 2010-01-01 2010-01-01 false Excessively rough texture. 51.1014 Section 51.1014 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE (Standards... texture. Excessively rough texture means that the skin is badly ridged or very decidedly lumpy....

  12. Turbulent boundary layer flow over broad-banded roughness

    NASA Astrophysics Data System (ADS)

    Pawlak, Geno; Aghsaee, Payam; Mazrouei, Saeed; Leonardi, Stefano; Rajagopalan, Krishnakumar; Kobayashi, Marcelo

    2014-11-01

    The response of the boundary layer to a regular roughness is often parameterized in terms of the length scales defining the roughness. Difficulty arises in the case of broad-banded and highly irregular roughness distributions such as over coral reefs or urban canopies where the length scale that determines the response of the boundary layer is not clear. Here we use a spectral description for roughness to create idealized two-dimensional irregular roughness profiles, using square waves as a basis function. Laboratory experiments along with Direct Numerical Simulations (DNS) are used to examine the hydrodynamic response to the broad-banded roughness and flow characteristics are related to geometric characteristics of the boundary. The simulations and experiments show that the nature of the flow over two-dimensional irregular walls can be determined as a function of the hydrodynamic origin, which, in turn, can be determined as a function of a mean cavity shape. Results are interpreted in terms of the spectral characteristics of the roughness. The contribution of the various spectral components to the total drag is analyzed for each case. The roughness spectrum influences the flow through the shape of the cavities on the wall and can provide some guidance in predicting the nature of the flow.

  13. Road roughness evaluation using in-pavement strain sensors

    NASA Astrophysics Data System (ADS)

    Zhang, Zhiming; Deng, Fodan; Huang, Ying; Bridgelall, Raj

    2015-11-01

    The international roughness index (IRI) is a characterization of road roughness or ride quality that transportation agencies most often report. The prevalent method of acquiring IRI data requires instrumented vehicles and technicians with specialized training to interpret the results. The extensive labor and high cost requirements associated with the existing approaches limit data collection to at most once per year for portions of the national highway system. Agencies characterize roughness only for some secondary roads but much less frequently, such as once every five years, resulting in outdated roughness information. This research developed a real-time roughness evaluation approach that links the output of durable in-pavement strain sensors to prevailing indices that summarize road roughness. Field experiments validated the high consistency of the approach by showing that it is within 3.3% of relative IRI estimates. After their installation and calibration during road construction, the ruggedized strain sensors will report road roughness continuously. Thus, the solution will provide agencies a real-time roughness monitoring solution over the remaining service life of road assets.

  14. Computational Analysis for Roughness-Based Transition Control

    NASA Technical Reports Server (NTRS)

    Li, Fei; Choudhari, Meelan M.; Chang, Chau-Lyan; Edwards, Jack R., Jr.

    2009-01-01

    Suitably placed discrete roughness elements are known to delay or hasten the onset of transition, depending on requirements. In this paper, 2D eigenvalue analysis is used to study the effects of surface roughness in the context of transition delay over subsonic and supersonic swept wing configurations, as well as boundarylayer tripping on the forebody of a hypersonic air breathing vehicle.

  15. Moisture Diffusivity Characteristics of Rough Rice Under Infrared Radiation Heating

    Technology Transfer Automated Retrieval System (TEKTRAN)

    To design an efficient infrared (IR) dryer for rough rice, it is important to understand the drying behavior of rice grains under infrared heating. The objective of this study was to determine the moisture diffusivity and moisture diffusivity coefficient of rough rice under IR heating and cooling. ...

  16. Ice Roughness in Short Duration SLD Icing Events

    NASA Technical Reports Server (NTRS)

    McClain, Stephen T.; Reed, Dana; Vargas, Mario; Kreeger, Richard E.; Tsao, Jen-Ching

    2014-01-01

    Ice accretion codes depend on models of roughness parameters to account for the enhanced heat transfer during the ice accretion process. While mitigating supercooled large droplet (SLD or Appendix O) icing is a significant concern for manufacturers seeking future vehicle certification due to the pending regulation, historical ice roughness studies have been performed using Appendix C icing clouds which exhibit mean volumetric diameters (MVD) much smaller than SLD clouds. Further, the historical studies of roughness focused on extracting parametric representations of ice roughness using multiple images of roughness elements. In this study, the ice roughness developed on a 21-in. NACA 0012 at 0deg angle of attack exposed to short duration SLD icing events was measured in the Icing Research Tunnel at the NASA Glenn Research Center. The MVD's used in the study ranged from 100 micrometer to 200 micrometers, in a 67 m/s flow, with liquid water contents of either 0.6 gm/cubic meters or 0.75 gm/cubic meters. The ice surfaces were measured using a Romer Absolute Arm laser scanning system. The roughness associated with each surface point cloud was measured using the two-dimensional self-organizing map approach developed by McClain and Kreeger (2013) resulting in statistical descriptions of the ice roughness.

  17. 7 CFR 51.776 - Slightly rough texture.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 2 2010-01-01 2010-01-01 false Slightly rough texture. 51.776 Section 51.776... STANDARDS) United States Standards for Grades of Florida Grapefruit Definitions § 51.776 Slightly rough..., materially ridged or grooved. “Slightly thick” means that the skin thickness does not average more than...

  18. Data Mining Using Extensions of the Rough Set Model.

    ERIC Educational Resources Information Center

    Lingras, P. J.; Yao, Y. Y.

    1998-01-01

    Examines basic issues of data mining using the theory of rough sets, a recent proposal for generalizing classical set theory. Demonstrates that a generalized rough set model can be used for generating rules from incomplete databases. Discusses the importance of rule extraction from incomplete databases in data mining. (AEF)

  19. Tributyltin induces apoptotic signaling in hepatocytes through pathways involving the endoplasmic reticulum and mitochondria

    SciTech Connect

    Grondin, Melanie; Marion, Michel; Denizeau, Francine; Averill-Bates, Diana A. . E-mail: averill.diana@uqam.ca

    2007-07-01

    Tri-n-butyltin is a widespread environmental toxicant, which accumulates in the liver. This study investigates whether tri-n-butyltin induces pro-apoptotic signaling in rat liver hepatocytes through pathways involving the endoplasmic reticulum and mitochondria. Tri-n-butyltin activated the endoplasmic reticulum pathway of apoptosis, which was demonstrated by the activation of the protease calpain, its translocation to the plasma membrane, followed by cleavage of the calpain substrates, cytoskeletal protein vinculin, and caspase-12. Caspase-12 is localized to the cytoplasmic side of the endoplasmic reticulum and is involved in apoptosis mediated by the endoplasmic reticulum. Tri-n-butyltin also caused translocation of the pro-apoptotic proteins Bax and Bad from the cytosol to mitochondria, as well as changes in mitochondrial membrane permeability, events which can activate the mitochondrial death pathway. Tri-n-butyltin induced downstream apoptotic events in rat hepatocytes at the nuclear level, detected by chromatin condensation and by confocal microscopy using acridine orange. We investigated whether the tri-n-butyltin-induced pro-apoptotic events in hepatocytes could be linked to perturbation of intracellular calcium homeostasis, using confocal microscopy. Tri-n-butyltin caused changes in intracellular calcium distribution, which were similar to those induced by thapsigargin. Calcium was released from a subcellular compartment, which is likely to be the endoplasmic reticulum, into the cytosol. Cytosolic acidification, which is known to trigger apoptosis, also occurred and involved the Cl{sup -}/HCO{sub 3} {sup -} exchanger. Pro-apoptotic events in hepatocytes were inhibited by the calcium chelator, Bapta-AM, and by a calpain inhibitor, which suggests that changes in intracellular calcium homeostasis are involved in tri-n-butyltin-induced apoptotic signaling in rat hepatocytes.

  20. Identification of the endoplasmic reticulum targeting signal in vesicle-associated membrane proteins.

    PubMed

    Kim, P K; Hollerbach, C; Trimble, W S; Leber, B; Andrews, D W

    1999-12-24

    The vesicle-associated membrane proteins (Vamp(s)) function as soluble N-ethylmaleimide-sensitive factor attachment receptor proteins in the intracellular trafficking of vesicles. The membrane attachment of Vamps requires a carboxyl-terminal hydrophobic sequence termed an insertion sequence. Unlike other insertion sequence-containing proteins, targeting of the highly homologous Vamp1 and Vamp2 to the endoplasmic reticulum requires ATP and a membrane-bound receptor. To determine if this mechanism of targeting to the endoplasmic reticulum extends to other Vamps, we compared the membrane binding of Vamp1 and Vamp2 with the distantly related Vamp8. Similar to the other Vamps, Vamp8 requires both ATP and a membrane component to target to the endoplasmic reticulum. Furthermore, binding curves for the three Vamps overlap, suggesting a common receptor-mediated process. We identified a minimal endoplasmic reticulum targeting domain that is both necessary and sufficient to confer receptor-mediated, ATP-dependent, binding of a heterologous protein to microsomes. Surprisingly, this conserved sequence includes four positively charged amino acids spaced along an amphipathic sequence, which unlike the carboxyl-terminal targeting sequence in mitochondrial Vamp isoforms, is amino-terminal to the insertion sequence. Because Vamps do not bind to phospholipid vesicles, it is likely that these residues mediate an interaction with a protein, rather than bind to acidic phospholipids. Therefore, we suggest that a bipartite motif is required for the specific targeting and integration of Vamps into the endoplasmic reticulum with receptor-mediated recognition of specifically configured positive residues leading to the insertion of the hydrophobic tail into the membrane. PMID:10601239

  1. Maps of Lunar Topographic Roughness: Correlation with Geological Features

    NASA Astrophysics Data System (ADS)

    Kreslavsky, M. A.; Head, J. W.; Neumann, G. A.; Zuber, M. T.; Smith, D. E.

    2012-12-01

    Lunar Orbiter Laser Altimeter LOLA [Smith et al. 2010 Space Sci. Rev. 150, 209] on board the Lunar Reconnaissance Orbiter is accumulating high-precision lunar surface elevation measurements. This data set is an excellent source for mapping lunar topographic roughness [Rosenburg et al. 2011 JGR 116, E02001]. Such maps are useful in planetary geology for the following reasons. (1) Roughness maps provide a convenient one-glance synoptic overview of small-scale textures. (2) They help focus on typical background topography, while researcher's eyes usually pick prominent features. (3) Roughness maps utilize the exceptional along-orbit precision of laser altimeter data. In a series of roughness maps that we present here, we use the interquartile range of along-profile curvature at a given baseline as a measure of roughness. We use a progression of baselines starting from the double LOLA probing step: 0.12, 0.46, 0.92, 1.8 km. We also show some useful color composites combining these maps and showing the scale dependence of roughness. Available data allow roughness mapping at 8 pixels per degree resolution. The nature of the lunar roughness changes abruptly at sub-km scale. At 0.46 km baseline and longer, the most prominent feature on the roughness maps is the dichotomy between smooth maria and rough highlands. At 0.12 km baseline, the mare/highland boundary disappears; some mare surfaces are rougher and some are smoother than typical highlands. At this baseline the surface topography is controlled by regolith gardening and reflects small-scale resurfacing during the Copernican and Eratosthenian periods, while for longer baselines the topography is defined by bedrock geology and "remembers" Imbrian and earlier events. At short scales (0.12 km baseline) both the roughest and the smoothest terrains are related to Copernican-aged large impact craters. Craters themselves and their proximal ejecta are extremely rough; the roughest ejecta is separated from craters by prominent

  2. Scattering of light by molecules over a rough surface.

    PubMed

    Long, Maureen; Khine, Michelle; Kim, Arnold D

    2010-05-01

    We present a theory for the multiple scattering of light by obstacles situated over a rough surface. This problem is important for applications in biological and chemical sensors. To keep the formulation of this theory simple, we study scalar waves. This theory requires knowledge of the scattering operator (t-matrix) for each of the obstacles as well as the reflection operator for the rough surface. The scattering operator gives the field scattered by the obstacle due to an exciting field incident on the scatterer. The reflection operator gives the field reflected by the rough surface due to an exciting field incident on the rough surface. We apply this general theory for the special case of point scatterers and a slightly rough surface with homogeneous Dirichlet and Neumann boundary conditions. We show examples that demonstrate the utility of this theory. PMID:20448766

  3. Gas flow through rough microchannels in the transition flow regime.

    PubMed

    Deng, Zilong; Chen, Yongping; Shao, Chenxi

    2016-01-01

    A multiple-relaxation-time lattice Boltzmann model of Couette flow is developed to investigate the rarified gas flow through microchannels with roughness characterized by fractal geometry, especially to elucidate the coupled effects of roughness and rarefaction on microscale gas flow in the transition flow regime. The results indicate that the surface roughness effect on gas flow behavior becomes more significant in rarefied gas flow with the increase of Knudsen number. We find the gas flow behavior in the transition flow regime is more sensitive to roughness height than that in the slip flow regime. In particular, the influence of fractal dimension on rarefied gas flow behavior is less significant than roughness height. PMID:26871175

  4. On universality of scaling law describing roughness of triple line.

    PubMed

    Bormashenko, Edward; Musin, Albina; Whyman, Gene; Barkay, Zahava; Zinigrad, Michael

    2015-01-01

    The fine structure of the three-phase (triple) line was studied for different liquids, various topographies of micro-rough substrates and various wetting regimes. Wetting of porous and pillar-based micro-scaled polymer surfaces was investigated. The triple line was visualized with the environmental scanning electron microscope and scanning electron microscope for the "frozen" triple lines. The value of the roughness exponent ζ for water (ice)/rough polymer systems was located within 0.55-0.63. For epoxy glue/rough polymer systems somewhat lower values of the exponent, 0.42 < ζ < 0.54, were established. The obtained values of ζ were close for the Cassie and Wenzel wetting regimes, different liquids, and different substrates' topographies. Thus, the above values of the exponent are to a great extent universal. The switch of the exponent, when the roughness size approaches to the correlation length of the defects, is also universal. PMID:25618613

  5. Loading-unloading hysteresis loop of randomly rough adhesive contacts

    NASA Astrophysics Data System (ADS)

    Carbone, Giuseppe; Pierro, Elena; Recchia, Giuseppina

    2015-12-01

    We investigate the loading and unloading behavior of soft solids in adhesive contact with randomly rough profiles. The roughness is assumed to be described by a self-affine fractal on a limited range of wave vectors. A spectral method is exploited to generate such randomly rough surfaces. The results are statistically averaged, and the calculated contact area and applied load are shown as a function of the penetration, for loading and unloading conditions. We found that the combination of adhesion forces and roughness leads to a hysteresis loading-unloading loop. This shows that energy can be lost simply as a consequence of roughness and van der Waals forces, as in this case a large number of local energy minima exist and the system may be trapped in metastable states. We numerically quantify the hysteretic loss and assess the influence of the surface statistical properties and the energy of adhesion on the hysteresis process.

  6. Effect of surface roughness pattern on transient mixed elastohydrodynamic lubrication

    NASA Astrophysics Data System (ADS)

    Torabi, Amir; Akbarzadeh, Saleh; Salimpour, Mohammad Reza; Taei, Morteza

    2016-03-01

    Besides the surface roughness of two contacting surfaces, the surface roughness pattern i.e. longitudinal, transverse and isotropic significantly influences the tribological performance of the mechanical element. Their impression is more pronounced under the mixed elasto-hydrodynamic lubrication condition. The cam and flat follower mechanism is a typical sample in which adverse tribological conditions, including direct boundary interactions occurs. In this paper, the effect of surface roughness pattern on the film thickness and friction coefficient in a cam follower mechanism is investigated. Asperity interaction and friction coefficient analysis is conducted based on a novel elasto-plastic model. The lubrication model is qualitatively compared with the experimental results obtained from the pin on disk experiments for various surface roughness orientations. The results of transient lubrication analysis for a cam and follower lubrication problem are presented. It is shown that the longitudinal surface roughness pattern has a more desirable tribological performance than transverse surface pattern.

  7. Loading-unloading hysteresis loop of randomly rough adhesive contacts.

    PubMed

    Carbone, Giuseppe; Pierro, Elena; Recchia, Giuseppina

    2015-12-01

    We investigate the loading and unloading behavior of soft solids in adhesive contact with randomly rough profiles. The roughness is assumed to be described by a self-affine fractal on a limited range of wave vectors. A spectral method is exploited to generate such randomly rough surfaces. The results are statistically averaged, and the calculated contact area and applied load are shown as a function of the penetration, for loading and unloading conditions. We found that the combination of adhesion forces and roughness leads to a hysteresis loading-unloading loop. This shows that energy can be lost simply as a consequence of roughness and van der Waals forces, as in this case a large number of local energy minima exist and the system may be trapped in metastable states. We numerically quantify the hysteretic loss and assess the influence of the surface statistical properties and the energy of adhesion on the hysteresis process. PMID:26764700

  8. Effect of surface roughness on the microwave emission from soils

    NASA Technical Reports Server (NTRS)

    Choudhury, B. J.; Schmugge, T. J.; Newton, R. W.; Chang, A. T. C.

    1978-01-01

    The effect of surface roughness on the brightness temperature of a moist terrain was studied through the modification of Fresnel reflection coefficient and using the radiative transfer equation. The modification involves introduction of a single parameter to characterize the roughness. It is shown that this parameter depends on both the surface height variance and the horizontal scale of the roughness. Model calculations are in good quantitative agreement with the observed dependence of the brightness temperature on the moisture content in the surface layer. Data from truck mounted and airborne radiometers are presented for comparison. The results indicate that the roughness effects are greatest for wet soils where the difference between smooth and rough surfaces can be as great as 50K.

  9. Effect of surface roughness on the microwave emission from soils

    NASA Technical Reports Server (NTRS)

    Choudhury, B. J.; Schmugge, T. J.; Chang, A.; Newton, R. W.

    1979-01-01

    The effect of surface roughness on the brightness temperature of a moist terrain has been studied through the modification of Fresnel reflection coefficient and using the radiative transfer equation. The modification involves introduction of a single parameter to characterize the roughness. It is shown that this parameter depends on both the surface height variance and the horizontal scale of the roughness. Model calculations are in good quantitative agreement with the observed dependence of the brightness temperature on the moisture content in the surface layer. Data from truck mounted and airborne radiometers are presented for comparison. The results indicate that the roughness effects are great for wet soils where the difference between smooth and rough surfaces can be as great as 50 K.

  10. Computer simulation of RBS spectra from samples with surface roughness

    NASA Astrophysics Data System (ADS)

    Malinský, P.; Hnatowicz, V.; Macková, A.

    2016-03-01

    A fast code for the simulation of common RBS spectra including surface roughness effects has been written and tested on virtual samples comprising either a rough layer deposited on a smooth substrate or smooth layer deposited on a rough substrate and simulated at different geometries. The sample surface or interface relief has been described by a polyline and the simulated RBS spectrum has been obtained as the sum of many particular spectra from randomly chosen particle trajectories. The code includes several procedures generating virtual samples with random and regular (periodical) roughness. The shape of the RBS spectra has been found to change strongly with increasing sample roughness and an increasing angle of the incoming ion beam.

  11. Mask roughness induced LER: a rule of thumb -- paper

    SciTech Connect

    McClinton, Brittany; Naulleau, Patrick

    2010-03-12

    Much work has already been done on how both the resist and line-edge roughness (LER) on the mask affect the final printed LER. What is poorly understood, however, is the extent to which system-level effects such as mask surface roughness, illumination conditions, and defocus couple to speckle at the image plane, and currently factor into LER limits. Here, we propose a 'rule-of-thumb' simplified solution that provides a fast and powerful method to obtain mask roughness induced LER. We present modeling data on an older generation mask with a roughness of 230 pm as well as the ultimate target roughness of 50 pm. Moreover, we consider feature sizes of 50 nm and 22 nm, and show that as a function of correlation length, the LER peaks at the condition that the correlation length is approximately equal to the resolution of the imaging optic.

  12. Topological Analysis of Rough Surfaces Using Persistent Homology

    NASA Astrophysics Data System (ADS)

    Yamamoto, Ken

    2015-11-01

    This letter investigates rough surfaces using a topological method. The horizontal cross section of a rough surface consists of "islands", and we focus on the topological changes in the island shapes (generation and annihilation of islands and lakes) with changes in elevation. We apply persistent homology to track these topological changes. We numerically confirm that the life spans of the islands and lakes follow power-law distributions, whose scaling exponents vary according to the roughness of the surface. We also provide a theoretical explanation for the relation between these scaling exponents and the roughness exponent with a simple scaling argument. The proposed method successfully connects a topological property with the roughness of a surface.

  13. Determining Surface Roughness in Urban Areas Using Lidar Data

    NASA Technical Reports Server (NTRS)

    Holland, Donald

    2009-01-01

    An automated procedure has been developed to derive relevant factors, which can increase the ability to produce objective, repeatable methods for determining aerodynamic surface roughness. Aerodynamic surface roughness is used for many applications, like atmospheric dispersive models and wind-damage models. For this technique, existing lidar data was used that was originally collected for terrain analysis, and demonstrated that surface roughness values can be automatically derived, and then subsequently utilized in disaster-management and homeland security models. The developed lidar-processing algorithm effectively distinguishes buildings from trees and characterizes their size, density, orientation, and spacing (see figure); all of these variables are parameters that are required to calculate the estimated surface roughness for a specified area. By using this algorithm, aerodynamic surface roughness values in urban areas can then be extracted automatically. The user can also adjust the algorithm for local conditions and lidar characteristics, like summer/winter vegetation and dense/sparse lidar point spacing. Additionally, the user can also survey variations in surface roughness that occurs due to wind direction; for example, during a hurricane, when wind direction can change dramatically, this variable can be extremely significant. In its current state, the algorithm calculates an estimated surface roughness for a square kilometer area; techniques using the lidar data to calculate the surface roughness for a point, whereby only roughness elements that are upstream from the point of interest are used and the wind direction is a vital concern, are being investigated. This technological advancement will improve the reliability and accuracy of models that use and incorporate surface roughness.

  14. Clouds Versus Carbon: Predicting Vegetation Roughness by Maximizing Productivity

    NASA Technical Reports Server (NTRS)

    Olsen, Lola M.

    2004-01-01

    Surface roughness is one of the dominant vegetation properties that affects land surface exchange of energy, water, carbon, and momentum with the overlying atmosphere. We hypothesize that the canopy structure of terrestrial vegetation adapts optimally to climate by maximizing productivity, leading to an optimum surface roughness. An optimum should exist because increasing values of surface roughness cause increased surface exchange, leading to increased supply of carbon dioxide for photosynthesis. At the same time, increased roughness enhances evapotranspiration and cloud cover, thereby reducing the supply of photosynthetically active radiation. We demonstrate the optimum through sensitivity simulations using a coupled dynamic vegetation-climate model for present day conditions, in which we vary the value of surface roughness for vegetated surfaces. We find that the maximum in productivity occurs at a roughness length of 2 meters, a value commonly used to describe the roughness of today's forested surfaces. The sensitivity simulations also illustrate the strong climatic impacts of vegetation roughness on the energy and water balances over land: with increasing vegetation roughness, solar radiation is reduced by up to 20 W/sq m in the global land mean, causing shifts in the energy partitioning and leading to general cooling of the surface by 1.5 K. We conclude that the roughness of vegetated surfaces can be understood as a reflection of optimum adaptation, and it is associated with substantial changes in the surface energy and water balances over land. The role of the cloud feedback in shaping the optimum underlines the importance of an integrated perspective that views vegetation and its adaptive nature as an integrated component of the Earth system.

  15. Abundances in "Green Pea" Star-forming Galaxies

    NASA Astrophysics Data System (ADS)

    Hawley, Steven A.

    2012-01-01

    He II λ4686 is identified in the spectra of nine of the original "Green Peas," a type of compact star-forming galaxy characterized by low mass; low metallicity; strong [O III] λλ4959, 5007; and redshifts in the range of ~0.1-0.4. Measured λ4686/Hβ ratios are roughly 1-2%, consistent with photoionization by Wolf-Rayet stars. Emission-line intensities are measured from Sloan Digital Sky Survey spectra for 71 Green Peas and are used to determine Te-based abundances of O, N, Ne, S, and He. Neon abundances confirm the mass-metallicity relation inferred from O/H. The N/O ratio is roughly constant with O/H, and the average N/O is evidence of a modest nitrogen enhancement compared with other low-metallicity galaxies. Nitrogen enrichment could be due to Wolf-Rayet stars or to intermediate-mass stars during a previous quiescent period. The Te-based abundances allow a reevaluation of some of the strong-line methods favored for estimating O/H or N/O in large spectroscopic surveys of star-forming galaxies. Photoionization by Wolf-Rayet stars raises questions about the validity of strong-line methods based on [N II]/Hα, [N II]/[O III], or [N II]/[S II], as those line ratios are known to be ionization-sensitive. Analysis of these measurements shows that ionization, low metallicity, and the small variation in important line ratios in the Green Pea spectra all affect the behavior of one or more of the N2, O3N2, N2O2 and N2S2 strong-line methods. The previous findings for trends in O/H and N/O in the Green Peas can be reproduced and the discrepancies can be explained. In particular, the reported increase of N/O with O/H appears to be a bias introduced by combining N2 with N2S2. N2O2 does not give valid results in the Green Peas, while N2 and N2S2 do, although the calibrations of the N2 and N2S2 methods based on Green Pea abundances are different from the existing calibrations based primarily on abundances in extragalactic H II regions and H II galaxies.

  16. Coronal abundances and their variation

    NASA Technical Reports Server (NTRS)

    Saba, Julia L. R.

    1994-01-01

    This contract supports the investigation of elemental abundances in the solar corona, principally through analysis of high-resolution software X-ray spectra from the Flat Crystal Spectrometer on NASA's Solar Maximum Mission. The goals of the study are a characterization of the mean values of relative abundances of elements accessible in the FCS data, and information on the extent and circumstances of their variability. This report is a summation of the data analysis and reporting activities which occurred since the last report, submitted two months early, in April 1994, to facilitate evaluation of the first year's progress for contract renewal. Hence this report covers the period 15 April 1994 - 15 December 1994. A list of publications resulting from this research is included.

  17. Abundant type 10 17 beta-hydroxysteroid dehydrogenase in the hippocampus of mouse Alzheimer's disease model.

    PubMed

    He, Xue Ying; Wen, Guang Yeong; Merz, George; Lin, Dawei; Yang, Ying Zi; Mehta, Penkaj; Schulz, Horst; Yang, Song Yu

    2002-02-28

    A full-length cDNA of mouse type 10 17 beta-hydroxysteroid dehydrogenase (17 beta-HSD10) was cloned from brain, representing the accurate nucleotide sequence information that rendered possible an accurate deduction of the amino acid sequence of the wild-type enzyme. A comparison of sequences and three-dimensional models of this enzyme revealed that structures previously reported by other groups carry either a truncated or mutated amino-terminal sequence. Fusion of the first 11 residues of the wild-type enzyme to the green fluorescent protein directed the reporter protein into mitochondria. Thus, the N-terminus was identified as a mitochondrial targeting signal that accounts for the intracellular localization of the mouse enzyme. This enzyme is normally associated with mitochondria, not with the endoplasmic reticulum as suggested by its trivial name 'endoplasmic reticulum-associated amyloid-beta biding protein (ERAB)'. After its C-terminal region was used to raise rabbit anti-17 betaHSD10 antibodies, immunogold electron microscopy showed that an abundance of this enzyme could be found in hippocampal synaptic mitochondria of betaAPP transgenic mice, but not in normal controls. High levels of this enzyme may disrupt steroid hormone homeostasis in synapses and contribute to synapse loss in the hippocampus of the mouse Alzheimer's disease model. PMID:11869808

  18. The solar abundance of thulium

    NASA Technical Reports Server (NTRS)

    Ross, J. E.; Aller, L. H.

    1974-01-01

    Consideration of one relatively unblended line of the solar spectrum, namely, the 3131.258-A line of Tm II, which yields a thulium abundance of 0.80 plus or minus 0.10 with the Corliss and Bozman (1962) f-value. The uncertainty of this figure is discussed in conjunction with the contradictory findings of some other investigators. The need for further detailed study of the lanthanides by the method of spectrum synthesis is pointed out.

  19. Chlorine Abundances in Martian Meteorites

    NASA Technical Reports Server (NTRS)

    Bogard, D.D.; Garrison, D.H.; Park, J.

    2009-01-01

    Chlorine measurements made in martian surface rocks by robotic spacecraft typically give Chlorine (Cl) abundances of approximately 0.1-0.8%. In contrast, Cl abundances in martian meteorites appear lower, although data is limited, and martian nakhlites were also subjected to Cl contamination by Mars surface brines. Chlorine abundances reported by one lab for whole rock (WR) samples of Shergotty, ALH77005, and EET79001 range 108-14 ppm, whereas Cl in nakhlites range 73-1900 ppm. Measurements of Cl in various martian weathering phases of nakhlites varied 0.04-4.7% and reveal significant concentration of Cl by martian brines Martian meteorites contain much lower Chlorine than those measured in martian surface rocks and give further confirmation that Cl in these surface rocks was introduced by brines and weathering. It has been argued that Cl is twice as effective as water in lowering the melting point and promoting melting at shallower martian depths, and that significant Cl in the shergottite source region would negate any need for significant water. However, this conclusion was based on experiments that utilized Cl concentrations more analogous to martian surface rocks than to shergottite meteorites, and may not be applicable to shergottites.

  20. Surface abundances of OC supergiants

    NASA Astrophysics Data System (ADS)

    Martins, F.; Foschino, S.; Bouret, J.-C.; Barbá, R.; Howarth, I.

    2016-04-01

    Context. Some O and B stars show unusually strong or weak lines of carbon and/or nitrogen. These objects are classified as OBN or OBC stars. It has recently been shown that nitrogen enrichment and carbon depletion are the most likely explanations for the existence of the ON class. Aims: We investigate OC stars (all being supergiants) to check that surface abundances are responsible for the observed anomalous line strengths. Methods: We perform a spectroscopic analysis of three OC supergiants using atmosphere models. A fourth star was previously studied by us. Our sample thus comprises all OC stars known to date in the Galaxy. We determine the stellar parameters and He, C, N, and O surface abundances. Results: We show that all stars have effective temperatures and surface gravities fully consistent with morphologically normal O supergiants. However, OC stars show little, if any, nitrogen enrichment and carbon surface abundances consistent with the initial composition. OC supergiants are thus barely chemically evolved, unlike morphologically normal O supergiants. Based on observations obtained at the ESO/La Silla Observatory under programs 081.D-2008, 083.D-0589, 089.D-0975.

  1. Numerical Model Sensitivity to Heterogeneous Satellite Derived Vegetation Roughness

    NASA Technical Reports Server (NTRS)

    Jasinski, Michael; Eastman, Joseph; Borak, Jordan

    2011-01-01

    The sensitivity of a mesoscale weather prediction model to a 1 km satellite-based vegetation roughness initialization is investigated for a domain within the south central United States. Three different roughness databases are employed: i) a control or standard lookup table roughness that is a function only of land cover type, ii) a spatially heterogeneous roughness database, specific to the domain, that was previously derived using a physically based procedure and Moderate Resolution Imaging Spectroradiometer (MODIS) imagery, and iii) a MODIS climatologic roughness database that like (i) is a function only of land cover type, but possesses domain specific mean values from (ii). The model used is the Weather Research and Forecast Model (WRF) coupled to the Community Land Model within the Land Information System (LIS). For each simulation, a statistical comparison is made between modeled results and ground observations within a domain including Oklahoma, Eastern Arkansas, and Northwest Louisiana during a 4-day period within IHOP 2002. Sensitivity analysis compares the impact the three roughness initializations on time-series temperature, precipitation probability of detection (POD), average wind speed, boundary layer height, and turbulent kinetic energy (TKE). Overall, the results indicate that, for the current investigation, replacement of the standard look-up table values with the satellite-derived values statistically improves model performance for most observed variables. Such natural roughness heterogeneity enhances the surface wind speed, PBL height and TKE production up to 10 percent, with a lesser effect over grassland, and greater effect over mixed land cover domains.

  2. Further Study of Multigranulation T-Fuzzy Rough Sets

    PubMed Central

    Zhang, Xiaoyan; Sun, Wenxin

    2014-01-01

    The optimistic multigranulation T-fuzzy rough set model was established based on multiple granulations under T-fuzzy approximation space by Xu et al., 2012. From the reference, a natural idea is to consider pessimistic multigranulation model in T-fuzzy approximation space. So, in this paper, the main objective is to make further studies according to Xu et al., 2012. The optimistic multigranulation T-fuzzy rough set model is improved deeply by investigating some further properties. And a complete multigranulation T-fuzzy rough set model is constituted by addressing the pessimistic multigranulation T-fuzzy rough set. The full important properties of multigranulation T-fuzzy lower and upper approximation operators are also presented. Moreover, relationships between multigranulation and classical T-fuzzy rough sets have been studied carefully. From the relationships, we can find that the T-fuzzy rough set model is a special instance of the two new types of models. In order to interpret and illustrate optimistic and pessimistic multigranulation T-fuzzy rough set models, a case is considered, which is helpful for applying these theories to practical issues. PMID:25215336

  3. Numerical prediction of rail roughness growth on tangent railway tracks

    NASA Astrophysics Data System (ADS)

    Nielsen, J. C. O.

    2003-10-01

    Growth of railhead roughness (irregularities, waviness) is predicted through numerical simulation of dynamic train-track interaction on tangent track. The hypothesis is that wear is caused by longitudinal slip due to driven wheelsets, and that wear is proportional to the longitudinal frictional power in the contact patch. Emanating from an initial roughness spectrum corresponding to a new or a recent ground rail, an initial roughness profile is determined. Wheel-rail contact forces, creepages and wear for one wheelset passage are calculated in relation to location along a discretely supported track model. The calculated wear is scaled by a chosen number of wheelset passages, and is then added to the initial roughness profile. Field observations of rail corrugation on a Dutch track are used to validate the simulation model. Results from the simulations predict a large roughness growth rate for wavelengths around 30-40 mm. The large growth in this wavelength interval is explained by a low track receptance near the sleepers around the pinned-pinned resonance frequency, in combination with a large number of driven passenger wheelset passages at uniform speed. The agreement between simulations and field measurements is good with respect to dominating roughness wavelength and annual wear rate. Remedies for reducing roughness growth are discussed.

  4. Polarimetric scattering behavior of rough dielectric materials at terahertz frequencies

    NASA Astrophysics Data System (ADS)

    Digiovanni, David Anthony

    Technologies in the terahertz region of the spectrum are finding increased usage in areas such as communications, remote sensing, and imaging, For example, driven by the promise of greater data transfer rates, free-space communication that traditionally operate in the radio and microwave bands are being developed at terahertz frequencies. Successful transition of communication systems to higher frequencies, particularly for systems located in indoor or urban environments, will require a thorough understanding of the reflection, transmission, absorption, and scattering behavior of a wide variety of materials and surface types. Scattering properties of rough surfaces have been studied extensively at radio and microwave frequencies, however, such properties have only recently become of interest at higher frequencies. The goal of this thesis was to develop a better understanding of electromagnetic scattering from dielectric rough surfaces at millimeter wavelengths and terahertz frequencies. This goal was achieved by measuring the polarimetric scattering behavior of dielectric materials and comparing the measured data to predictions made by rough surface scattering theory. The dielectric properties and the roughness of the samples were tailored in order to provide a controlled parameter space to investigate. Fully polarimetric radar imagery of the rough surfaces were acquired at 160 GHz, 240 GHz, and 1.55 THz. The backscattering measurements were collected as a function of polarization, incident angle, and frequency. The applicability of various rough surface scattering theories was determined for the different roughness regimes studied.

  5. Surface roughness reduction using spray-coated hydrogen silsesquioxane reflow

    NASA Astrophysics Data System (ADS)

    Cech, Jiri; Pranov, Henrik; Kofod, Guggi; Matschuk, Maria; Murthy, Swathi; Taboryski, Rafael

    2013-09-01

    Surface roughness or texture is the most visible property of any object, including injection molded plastic parts. Roughness of the injection molding (IM) tool cavity directly affects not only appearance and perception of quality, but often also the function of all manufactured plastic parts. So called “optically smooth” plastic surfaces is one example, where low roughness of a tool cavity is desirable. Such tool surfaces can be very expensive to fabricate using conventional means, such as abrasive diamond polishing or diamond turning. We present a novel process to coat machined metal parts with hydrogen silsesquioxane (HSQ) to reduce their surface roughness. Results from the testing of surfaces made from two starting roughnesses are presented; one polished with grit 2500 sandpaper, another with grit 11.000 diamond polishing paste. We characterize the two surfaces with AFM, SEM and optical profilometry before and after coating. We show that the HSQ coating is able to reduce peak-to-valley roughness more than 20 times on the sandpaper polished sample, from 2.44(±0.99) μm to 104(±22) nm and more than 10 times for the paste polished sample from 1.85(±0.63) μm to 162(±28) nm while roughness averages are reduced 10 and 3 times respectively. We completed more than 10,000 injection molding cycles without detectable degradation of the HSQ coating. This result opens new possibilities for molding of affordable plastic parts with perfect surface finish.

  6. Surface forces: Surface roughness in theory and experiment

    SciTech Connect

    Parsons, Drew F. Walsh, Rick B.; Craig, Vincent S. J.

    2014-04-28

    A method of incorporating surface roughness into theoretical calculations of surface forces is presented. The model contains two chief elements. First, surface roughness is represented as a probability distribution of surface heights around an average surface height. A roughness-averaged force is determined by taking an average of the classic flat-surface force, weighing all possible separation distances against the probability distributions of surface heights. Second the model adds a repulsive contact force due to the elastic contact of asperities. We derive a simple analytic expression for the contact force. The general impact of roughness is to amplify the long range behaviour of noncontact (DLVO) forces. The impact of the elastic contact force is to provide a repulsive wall which is felt at a separation between surfaces that scales with the root-mean-square (RMS) roughness of the surfaces. The model therefore provides a means of distinguishing between “true zero,” where the separation between the average centres of each surface is zero, and “apparent zero,” defined by the onset of the repulsive contact wall. A normal distribution may be assumed for the surface probability distribution, characterised by the RMS roughness measured by atomic force microscopy (AFM). Alternatively the probability distribution may be defined by the histogram of heights measured by AFM. Both methods of treating surface roughness are compared against the classic smooth surface calculation and experimental AFM measurement.

  7. Roughness assessment and wetting behavior of fluorocarbon surfaces.

    PubMed

    Terriza, Antonia; Álvarez, Rafael; Borrás, Ana; Cotrino, José; Yubero, Francisco; González-Elipe, Agustín R

    2012-06-15

    The wetting behavior of fluorocarbon materials has been studied with the aim of assessing the influence of the surface chemical composition and surface roughness on the water advancing and receding contact angles. Diamond like carbon and two fluorocarbon materials with different fluorine content have been prepared by plasma enhanced chemical vapor deposition and characterized by X-ray photoemission, Raman and FT-IR spectroscopies. Very rough surfaces have been obtained by deposition of thin films of these materials on polymer substrates previously subjected to plasma etching to increase their roughness. A direct correlation has been found between roughness and water contact angles while a superhydrophobic behavior (i.e., water contact angles higher than 150° and relatively low adhesion energy) was found for the films with the highest fluorine content deposited on very rough substrates. A critical evaluation of the methods currently used to assess the roughness of these surfaces by atomic force microscopy (AFM) has evidenced that calculated RMS roughness values and actual surface areas are quite dependent on both the scale of observation and image resolution. A critical discussion is carried out about the application of the Wenzel model to account for the wetting behavior of this type of surfaces. PMID:22483335

  8. Investigation of wall-bounded turbulence over sparsely distributed roughness

    NASA Astrophysics Data System (ADS)

    Placidi, Marco; Ganapathisubramani, Bharath

    2011-11-01

    The effects of sparsely distributed roughness elements on the structure of a turbulent boundary layer are examined by performing a series of Particle Image Velocimetry (PIV) experiments in a wind tunnel. From the literature, the best way to characterise a rough wall, especially one where the density of roughness elements is sparse, is unclear. In this study, rough surfaces consisting of sparsely and uniformly distributed LEGO® blocks are used. Five different patterns are adopted in order to examine the effects of frontal solidity (λf, frontal area of the roughness elements per unit wall-parallel area), plan solidity (λp, plan area of roughness elements per unit wall-parallel area) and the geometry of the roughness element (square and cylindrical elements), on the turbulence structure. The Karman number, Reτ , has been matched, at the value of approximately 2300, in order to compare across the different cases. In the talk, we will present detailed analysis of mean and rms velocity profiles, Reynolds stresses and quadrant decomposition.

  9. Thermal Stability of Ice on Ceres with Rough Topography

    NASA Astrophysics Data System (ADS)

    Hayne, Paul O.; Aharonson, Oded

    2015-11-01

    The dwarf planet Ceres may have an ice-rich crust, and subsurface ice exposed by impacts or endogenic activity would be subject to sublimation. The “bright spots” recently discovered by the Dawn mission on the illuminated surface of Ceres have prompted speculation regarding their possible icy composition and the youthful age this might imply. Furthermore, sublimation of ice at the surface or in the interior of Ceres could explain water vapor observed on more than one occasion in the exosphere. We investigated the possible distribution and lifetimes of water ice and other volatiles on Ceres using detailed thermal models, including realistic thermophysical properties and surface roughness.Topographic shadowing creates polar cold traps where a small, but non-negligible fraction (~0.4%) of Ceres' surface is perennially below the ~110 K criterion for 1 Gyr of H2O ice stability. These areas are found above 60° latitude. Other molecules (CH3OH, NH3, SO2, CO2) may be cold-trapped in smaller abundances. A model for the transport, gravitational escape and photoionization of H2O molecules suggests net accumulation in the cold traps. At latitudes 0° - 30°, ice is stable under solar illumination only briefly (~10-100 yr), unless it has high albedo and thermal inertia, in which case lifetimes of > 104 yr are possible.Buried ice is stable within a meter for > 1 Gyr at latitudes higher than ~50°. An illuminated polar cap of water ice would be stable within a few degrees of the poles only if it maintained a high albedo (> 0.5) at present obliquity. If the obliquity exceeded 5° in the geologically recent past, then a putative polar cap would have been erased. Finally, a small hemispheric asymmetry exists due to the timing of Ceres' perihelion passage, which would lead to a detectable enhancement of ice in the northern hemisphere if the orbital elements vary slowly relative to the ice accumulation rate. Our model results are potentially testable during the Dawn science

  10. The Abundance of Interstellar Fluorine

    NASA Technical Reports Server (NTRS)

    Lauroesch, James T.

    2005-01-01

    The primary objective of this program was to obtain FUSE observations of the interstellar absorption lines of F I at 951 and 954 Angstroms to derive the abundance of fluorine toward the star HD 164816. The nucleosynthetic source(s) of fluorine are still a matter of debate - the present day abundance of fluorine can potentially constrain models for pulsationally driven dredge-up in asymptotic giant branch stars. An accurate measure for the depletion behavior of fluorine will determine whether it may be detectable in QSO absorption line systems - an unambiguous detection of fluorine at suitably high redshifts would provide the best evidence to date for the neutrino process in massive stars. Furthermore, due to its extreme reactivity, measurement of the gas-phase interstellar fluorine abundance is important for models of grain chemistry. Despite the importance of measuring the interstellar fluorine abundance, at the time of our proposal only one previous detection has been made due to the low relative abundance of fluorine, the lack of lines outside the far-UV, and the blending of the available F I transitions with lines of Hz. The star HD 164816 is associated with the Lagoon nebula (M8), and at a distance of approximately 1.5 kpc probes both distant and local gas. Beginning April 8th, 2004 FUSE FP-Split observations of the star HD 164816 were obtained for this program. This data became available in the FUSE data archive May 21, 2004, and these observations were then downloaded and we began our analysis. Our analysis procedure has involved (1) fitting stellar models to the FUSE spectra, (2) using the multiple lines of Hz and N I at other wavelengths in the FUSE bandpass to derive column densities for the lines of H2 and N I which are blended with the F I features at 951 and 954 angstroms (3) the measurement of the column densities of F I and the species O I and C1 I which are important species for the dis-entangling of dust and nucleosynthetic effects. As discussed in

  11. Sodium Butyrate Induces Endoplasmic Reticulum Stress and Autophagy in Colorectal Cells: Implications for Apoptosis

    PubMed Central

    Zhang, Jintao; Yi, Man; Zha, Longying; Chen, Siqiang; Li, Zhijia; Li, Cheng; Gong, Mingxing; Deng, Hong; Chu, Xinwei; Chen, Jiehua; Zhang, Zheqing; Mao, Limei; Sun, Suxia

    2016-01-01

    Purpose Butyrate, a short-chain fatty acid derived from dietary fiber, inhibits proliferation and induces cell death in colorectal cancer cells. However, clinical trials have shown mixed results regarding the anti-tumor activities of butyrate. We have previously shown that sodium butyrate increases endoplasmic reticulum stress by altering intracellular calcium levels, a well-known autophagy trigger. Here, we investigated whether sodium butyrate-induced endoplasmic reticulum stress mediated autophagy, and whether there was crosstalk between autophagy and the sodium butyrate-induced apoptotic response in human colorectal cancer cells. Methods Human colorectal cancer cell lines (HCT-116 and HT-29) were treated with sodium butyrate at concentrations ranging from 0.5–5mM. Cell proliferation was assessed using MTT tetrazolium salt formation. Autophagy induction was confirmed through a combination of Western blotting for associated proteins, acridine orange staining for acidic vesicles, detection of autolysosomes (MDC staining), and electron microscopy. Apoptosis was quantified by flow cytometry using standard annexinV/propidium iodide staining and by assessing PARP-1 cleavage by Western blot. Results Sodium butyrate suppressed colorectal cancer cell proliferation, induced autophagy, and resulted in apoptotic cell death. The induction of autophagy was supported by the accumulation of acidic vesicular organelles and autolysosomes, and the expression of autophagy-associated proteins, including microtubule-associated protein II light chain 3 (LC3-II), beclin-1, and autophagocytosis-associated protein (Atg)3. The autophagy inhibitors 3-methyladenine (3-MA) and chloroquine inhibited sodium butyrate induced autophagy. Furthermore, sodium butyrate treatment markedly enhanced the expression of endoplasmic reticulum stress-associated proteins, including BIP, CHOP, PDI, and IRE-1a. When endoplasmic reticulum stress was inhibited by pharmacological (cycloheximide and mithramycin

  12. Research on pavement roughness based on the laser triangulation

    NASA Astrophysics Data System (ADS)

    Chen, Wenxue; Ni, Zhibin; Hu, Xinhan; Lu, Xiaofeng

    2016-06-01

    Pavement roughness is one of the most important factors for appraising highway construction. In this paper, we choose the laser triangulation to measure pavement roughness. The principle and configuration of laser triangulation are introduced. Based on this technology, the pavement roughness of a road surface is measured. The measurement results are given in this paper. The measurement range of this system is 50 μm. The measurement error of this technology is analyzed. This technology has an important significance to appraise the quality of highway after completion of the workload.

  13. Lateral Casimir force between self-affine rough surfaces

    NASA Astrophysics Data System (ADS)

    Tajik, Fatemeh; Masoudi, Amir Ali; Khorrami, Mohammad

    2016-03-01

    The effect of self-affine roughness on the lateral Casimir force between two plates is studied using a perturbative expansion method. The PWS (pairwise summation) method is applicable only at lateral correlation lengths much larger than the separation between two plates. The effect of the roughness parameters on the lateral Casimir force is investigated, and it is seen that this effect is significant, enabling one to tailor roughness parameters so that to obtain the desirable Casimir force and increase the yield of micro- or nano-electromechanical devices based on the vacuum fluctuations.

  14. Reconstruction of scattering properties of rough air-dielectric boundary

    NASA Astrophysics Data System (ADS)

    Sokolov, V. G.; Zhdanov, D. D.; Potemin, I. S.; Garbul, A. A.; Voloboy, A. G.; Galaktionov, V. A.; Kirilov, N.

    2016-08-01

    The article is devoted to elaboration of the method of reconstruction of rough surface scattering properties. The object with rough surface is made of transparent dielectric material. Typically these properties are described with bi-directional scattering distribution function (BSDF). Direct measurement of such function is either impossible or very expensive. The suggested solution provides physically reasonable method for the rough surface BSDF reconstruction. The method is based on Monte-Carlo ray tracing simulation for BSDF calculation. Optimization technique is further applied to correctly reconstruct the BSDF. The results of the BSDF reconstruction together with measurement results are presented in the article as well.

  15. Boundary-layer receptivity of sound with roughness

    NASA Technical Reports Server (NTRS)

    Saric, William S.; Hoos, Jon A.; Radeztsky, Ronald H.

    1991-01-01

    An experimental study of receptivity was carried out using an acoustical disturbance in the freestream. The receptivity was enhanced by using a uniform two-dimensional roughness strip (tape). The roughness strip generated the local adjustment in the flow needed to couple the long-wavelength sound wave with the short-wavelength T-S wave. The method proved to be highly sensitive, with slight changes in the forcing frequency or in the height of the 2D roughness element having a strong effect on the amplitude of the observed T-S wave.

  16. Surface roughness scattering of electrons in bulk mosfets

    SciTech Connect

    Zuverink, Amanda Renee

    2015-11-01

    Surface-roughness scattering of electrons at the Si-SiO2 interface is a very important consideration when analyzing Si metal-oxide-semiconductor field-effect transistors (MOSFETs). Scattering reduces the mobility of the electrons and degrades the device performance. 250-nm and 50-nm bulk MOSFETs were simulated with varying device parameters and mesh sizes in order to compare the effects of surface-roughness scattering in multiple devices. The simulation framework includes the ensemble Monte Carlo method used to solve the Boltzmann transport equation coupled with a successive over-relaxation method used to solve the two-dimensional Poisson's equation. Four methods for simulating the surface-roughness scattering of electrons were implemented on both devices and compared: the constant specularity parameter, the momentum-dependent specularity parameter, and the real-space-roughness method with both uniform and varying electric fields. The specularity parameter is the probability of an electron scattering speculariy from a rough surface. It can be chosen as a constant, characterizing partially diffuse scattering of all electrons from the surface the same way, or it can be momentum dependent, where the size of rms roughness and the normal component of the electron wave number determine the probability of electron-momentum randomization. The real-space rough surface method uses the rms roughness height and correlation length of an actual MOSFET to simulate a rough interface. Due to their charge, electrons scatter from the electric field and not directly from the surface. If the electric field is kept uniform, the electrons do not perceive the roughness and scatter as if from a at surface. However, if the field is allowed to vary, the electrons scatter from the varying electric field as they would in a MOSFET. These methods were implemented for both the 50-nm and 250-nm MOSFETs, and using the rms roughness heights and correlation lengths for real devices. The

  17. Effect of wall roughness on fluid transport resistance in nanopores

    NASA Astrophysics Data System (ADS)

    Xu, Baoxing; Li, Yibing; Park, Taehyo; Chen, Xi

    2011-10-01

    Using non-equilibrium molecular dynamics simulations, we investigate the effect of wall roughness on the transport resistance of water molecules inside modified carbon nanotubes. The effective shear stress, which characterizes the strong interaction between liquid molecules and solid wall, is a quantity that dominates the nanofluidic transport resistance. Both the effective shear stress and nominal viscosity arise with the increase of the amplitude or the decrease of the wavelength of roughness. The effect of roughness is also relatively more prominent in smaller nanotubes. The molecular mechanism is elucidated through the study of the radial density profile, hydrogen bonding, and velocity field of the confined water molecules.

  18. A rough earth scattering model for multipath prediction

    NASA Technical Reports Server (NTRS)

    Page, L. J.; Chestnut, P. C.

    1970-01-01

    The most important phenomena to be considered in a model of radio wave communication between earth satellites are scattering from the surface of the earth. A model is derived and implemented on a computer to predict the field received after reflection from a rough, spherical earth. The scattering integrals are computed numerically; the domain of integration is the appropriate region on the surface of the earth. Calculations have been performed at VHF frequencies and for terrain which could be described as marshy land. Rough surface scattering calculations must be performed over a spherical earth when satellites are involved. There is a definite dependence on the values of the roughness, and the correlation length.

  19. Droplet morphologies on particles with macroscopic surface roughness.

    PubMed

    Stepánek, Frantisek; Rajniak, Pavol

    2006-01-31

    The equilibrium configuration of liquid droplets on the surface of macroscopically rough solid particles was determined by numerical simulations using the volume-of-fluid (VOF) method. The fractional surface coverage of the particle as a function of the droplet size, equilibrium contact angle, and the particle surface roughness amplitude and correlation length has been systematically investigated. Droplet size and contact angle were found to generally have a stronger effect on surface coverage than particle surface roughness. Because of droplet coalescence, a relatively large variation in surface coverage was observed for any given total liquid volume, particularly for larger values of the equilibrium contact angle. PMID:16430249

  20. Marius Hills: Surface Roughness from LROC and Mini-RF

    NASA Astrophysics Data System (ADS)

    Lawrence, S.; Hawke, B. R.; Bussey, B.; Stopar, J. D.; Denevi, B.; Robinson, M.; Tran, T.

    2010-12-01

    The Lunar Reconnaissance Orbiter Camera (LROC) Team is collecting hundreds of high-resolution (0.5 m/pixel) Narrow Angle Camera (NAC) images of lunar volcanic constructs (domes, “cones”, and associated features) [1,2]. Marius Hills represents the largest concentration of volcanic features on the Moon and is a high-priority target for future exploration [3,4]. NAC images of this region provide new insights into the morphology and geology of specific features at the meter scale, including lava flow fronts, tectonic features, layers, and topography (using LROC stereo imagery) [2]. Here, we report initial results from Mini-RF and LROC collaborative studies of the Marius Hills. Mini-RF uses a hybrid polarimetric architecture to measure surface backscatter characteristics and can acquire data in one of two radar bands, S (12 cm) or X (4 cm) [5]. The spatial resolution of Mini-RF (15 m/pixel) enables correlation of features observed in NAC images to Mini-RF data. Mini-RF S-Band zoom-mode data and daughter products, such as circular polarization ratio (CPR), were directly compared to NAC images. Mini-RF S-Band radar images reveal enhanced radar backscatter associated with volcanic constructs in the Marius Hills region. Mini-RF data show that Marius Hills volcanic constructs have enhanced average CPR values (0.5-0.7) compared to the CPR values of the surrounding mare (~0.4). This result is consistent with the conclusions of [6], and implies that the lava flows comprising the domes in this region are blocky. To quantify the surface roughness [e.g., 6,7] block populations associated with specific geologic features in the Marius Hills region are being digitized from NAC images. Only blocks that can be unambiguously identified (>1 m diameter) are included in the digitization process, producing counts and size estimates of the block population. High block abundances occur mainly at the distal ends of lava flows. The average size of these blocks is 9 m, and 50% of observed

  1. Cytoprotective role of the fatty acid binding protein 4 against oxidative and endoplasmic reticulum stress in 3T3-L1 adipocytes.

    PubMed

    Kajimoto, Kazuaki; Minami, Yoshitaka; Harashima, Hideyoshi

    2014-01-01

    The fatty acid binding protein 4 (FABP4), one of the most abundant proteins in adipocytes, has been reported to have a proinflammatory function in macrophages. However, the physiological role of FABP4, which is constitutively expressed in adipocytes, has not been fully elucidated. Previously, we demonstrated that FABP4 was involved in the regulation of interleukin-6 (IL-6) and vascular endothelial growth factor (VEGF) production in 3T3-L1 adipocytes. In this study, we examined the effects of FABP4 silencing on the oxidative and endoplasmic reticulum (ER) stress in 3T3-L1 adipocytes. We found that the cellular reactive oxygen species (ROS) and 8-nitro-cyclic GMP levels were significantly elevated in the differentiated 3T3-L1 adipocytes transfected with a small interfering RNA (siRNA) against Fabp4, although the intracellular levels or enzyme activities of antioxidants including reduced glutathione (GSH), superoxide dismutase (SOD) and glutathione S-transferase A4 (GSTA4) were not altered. An in vitro evaluation using the recombinant protein revealed that FABP4 itself functions as a scavenger protein against hydrogen peroxide (H2O2). FABP4-knockdown resulted in a significant lowering of cell viability of 3T3-L1 adipocytes against H2O2 treatment. Moreover, four kinds of markers related to the ER stress response including the endoplasmic reticulum to nucleus signaling 1 (Ern1), the signal sequence receptor α (Ssr1), the ORM1-like 3 (Ormdl3), and the spliced X-box binding protein 1 (Xbp1s), were all elevated as the result of the knockdown of FABP4. Consequently, FABP4 might have a new role as an antioxidant protein against H2O2 and contribute to cytoprotection against oxidative and ER stress in adipocytes. PMID:25161868

  2. Cytoprotective role of the fatty acid binding protein 4 against oxidative and endoplasmic reticulum stress in 3T3-L1 adipocytes

    PubMed Central

    Kajimoto, Kazuaki; Minami, Yoshitaka; Harashima, Hideyoshi

    2014-01-01

    The fatty acid binding protein 4 (FABP4), one of the most abundant proteins in adipocytes, has been reported to have a proinflammatory function in macrophages. However, the physiological role of FABP4, which is constitutively expressed in adipocytes, has not been fully elucidated. Previously, we demonstrated that FABP4 was involved in the regulation of interleukin-6 (IL-6) and vascular endothelial growth factor (VEGF) production in 3T3-L1 adipocytes. In this study, we examined the effects of FABP4 silencing on the oxidative and endoplasmic reticulum (ER) stress in 3T3-L1 adipocytes. We found that the cellular reactive oxygen species (ROS) and 8-nitro-cyclic GMP levels were significantly elevated in the differentiated 3T3-L1 adipocytes transfected with a small interfering RNA (siRNA) against Fabp4, although the intracellular levels or enzyme activities of antioxidants including reduced glutathione (GSH), superoxide dismutase (SOD) and glutathione S-transferase A4 (GSTA4) were not altered. An in vitro evaluation using the recombinant protein revealed that FABP4 itself functions as a scavenger protein against hydrogen peroxide (H2O2). FABP4-knockdown resulted in a significant lowering of cell viability of 3T3-L1 adipocytes against H2O2 treatment. Moreover, four kinds of markers related to the ER stress response including the endoplasmic reticulum to nucleus signaling 1 (Ern1), the signal sequence receptor α (Ssr1), the ORM1-like 3 (Ormdl3), and the spliced X-box binding protein 1 (Xbp1s), were all elevated as the result of the knockdown of FABP4. Consequently, FABP4 might have a new role as an antioxidant protein against H2O2 and contribute to cytoprotection against oxidative and ER stress in adipocytes. PMID:25161868

  3. Antcin K, an active triterpenoid from the fruiting bodies of basswood cultivated Antrodia cinnamomea, induces mitochondria and endoplasmic reticulum stress-mediated apoptosis in human hepatoma cells.

    PubMed

    Lai, Chiao-I; Chu, Yung-Lin; Ho, Chi-Tang; Su, Yu-Cheng; Kuo, Yueh-Hsiung; Sheen, Lee-Yan

    2016-01-01

    Liver cancer is the second leading cause of cancer deaths in Taiwan as per the 2011 statistics and ranks fourth in cancer-related mortality in the world. Recent researches have shown that Antrodia cinnamomea, a Taiwan-specific medicinal mushroom, has biological activities, including hepatoprotection, anti-inflammation, antihepatitis B virus activity, and anticancer activity. In the present study, the antiproliferative activity and molecular mechanisms of antcin K, the most abundant ergostane triterpenoid from the fruiting bodies of basswood cultivated A. cinnamomea, were investigated using human hepatoma Hep 3B cells. The results showed that antcin K effectively reduced Hep 3B cells viability within 48 hours. Antcin K induced phosphatidylserine exposure, chromatin condensation, and DNA damage, but did not significantly increase autophagosome content or cause cell expansion and cell lysis. Thus, the principal mode of Hep 3B cells death induced by antcin K was apoptosis, rather than autophagy or necrosis. In-depth investigation of the molecular mechanisms revealed that antcin K first promoted reactive oxygen species generation and adenosine triphosphate depletion, leading to endoplasmic reticulum stress and resulting in mitochondrial membrane permeability changes. After losing the mitochondrial membrane potential, caspase-independent and caspase-dependent apoptosis-related proteins were released, including HtrA2, apoptotic-induced factor, endonuclease G, and cytochrome c. Cytochrome c activated caspase-9 and caspase-3, and cut downstream protein PARP, ultimately leading to cell apoptosis. These results suggested that antcin K induced mitochondrial and endoplasmic reticulum stress-mediated apoptosis in human hepatoma cells. Coupled with these findings, antcin K has a potential to be a complementary agent in liver cancer therapy. PMID:26870680

  4. Contributions of TRPV1, endovanilloids, and endoplasmic reticulum stress in lung cell death in vitro and lung injury.

    PubMed

    Thomas, Karen C; Roberts, Jessica K; Deering-Rice, Cassandra E; Romero, Erin G; Dull, Randal O; Lee, Jeewoo; Yost, Garold S; Reilly, Christopher A

    2012-01-01

    Endogenous agonists of transient receptor potential vanilloid-1 (TRPV1) (endovanilloids) are implicated as mediators of lung injury during inflammation. This study tested the hypothesis that endovanilloids produced following lipopolysaccharide (LPS) treatment activate TRPV1 and cause endoplasmic reticulum stress/GADD153 expression in lung cells, representing a mechanistic component of lung injury. The TRPV1 agonist nonivamide induced GADD153 expression and caused cytotoxicity in immortalized and primary human bronchial, bronchiolar/alveolar, and microvascular endothelial cells, proportional to TRPV1 mRNA expression. In CF-1 mice, Trpv1 mRNA was most abundant in the alveoli, and intratracheal nonivamide treatment promoted Gadd153 expression in the alveolar region. Treatment of CF-1 mice with LPS increased Gadd153 in the lung, lactate dehydrogenase (LDH) in bronchoalveolar lavage (BAL) fluid, and lung wet-to-dry weight ratio. Cotreating mice with LPS and the TRPV1 antagonist LJO-328 reduced Gadd153 induction and LDH in BAL but did not inhibit increases in lung wet-to-dry ratio. In Trpv1(-/-) mice treated with LPS, Gadd153 induction and LDH in BAL were reduced relative to wild-type mice, and the wet-to-dry weight ratios of lungs from both wild-type and Trpv1(-/-) mice decreased. Organic extracts of blood collected from LPS-treated mice were more cytotoxic to TRPV1-overexpressing cells compared with BEAS-2B cells and extracts from control mice, however, most pure endovanilloids did not produce cytotoxicity in a characteristic TRPV1-dependent manner. Collectively, these data indicate a role for TRPV1, and endogenous TRPV1 agonists, in ER stress and cytotoxicity in lung cells but demonstrate that ER stress and cytotoxicity are not essential for pulmonary edema. PMID:21949157

  5. The thioxotriazole copper(II) complex A0 induces endoplasmic reticulum stress and paraptotic death in human cancer cells.

    PubMed

    Tardito, Saverio; Isella, Claudio; Medico, Enzo; Marchiò, Luciano; Bevilacqua, Elena; Hatzoglou, Maria; Bussolati, Ovidio; Franchi-Gazzola, Renata

    2009-09-01

    The copper(II) complex A0 induces a type of non-apoptotic cell death also known as paraptosis. Paraptosis involves extensive endoplasmic reticulum vacuolization in the absence of caspase activation. A wide panel of human cancer cell lines was used to demonstrate differences in cytotoxicity by the paraptosis-inducing drug A0 and the metal-based pro-apoptotic drug cisplatin. Gene expression profiling of the human fibrosarcoma HT1080 cells showed that, while cisplatin induced p53 targets, A0 up-regulated genes involved in the unfolded protein response (UPR) and response to heavy metals. The cytotoxic effects of A0 were associated with inhibition of the ubiquitin-proteasome system and accumulation of ubiquitinylated proteins, in a manner dependent on protein synthesis. Cycloheximide inhibited the accumulation of ubiquitinylated proteins and hampered A0-induced cell death process. The occurrence of the UPR during A0-induced death process was shown by the increased abundance of spliced XBP1 mRNA, transient eIF2alpha phosphorylation, and a series of downstream events, including attenuation of global protein synthesis and increased expression of ATF4, CHOP, BIP, and GADD34. Mouse embryonic fibroblasts expressing a mutant eIF2alpha, which could not be phosphorylated, were more resistant to A0 than wild type cells, pointing to a pro-death role of eIF2alpha phosphorylation. A0 may thus represent the prototypical member of a new class of compounds that cause paraptotic cell death via mechanisms involving eIF2alpha phosphorylation and the UPR. PMID:19561079

  6. Evidence of endoplasmic reticulum stress and liver inflammation in the American mink Neovison vison with benign hepatic steatosis.

    PubMed

    Rouvinen-Watt, Kirsti; Pal, Catherine; Martin, Timothy; Harris, Lora; Astatkie, Tessema; Kryzskaya, Darya; Kärjä, Vesa; Mustonen, Anne-Mari; Tammi, Raija; Tammi, Markku; Nieminen, Petteri

    2014-10-01

    We investigated the presence of inflammatory signs in the progression of fatty liver disease induced by fasting. Sixty standard black American mink (Neovison vison) were fasted for 0, 1, 3, 5, or 7 days and one group for 7 days followed by re-feeding for 28 days. Liver sections were evaluated histologically and liver mRNA levels indicating endoplasmic reticulum (ER) stress, adipogenic transformation, and inflammation were assessed by quantitative real-time PCR. After 3 days of fasting, the mink had developed moderate liver steatosis. Increased hyaluronan reactivity in lymphocytic foci but no Mallory-Denk bodies were seen in livers of the mink fasted for 5-7 days. Up-regulation of glucose-regulated protein, 78 kDa was observed on day 7 indicating ER stress, especially in the females. Liver lipoprotein lipase and monocyte chemoattractant protein 1 mRNA levels increased in response to 5-7 days of food deprivation, while tumor necrosis factor α (TNF-α) was the highest in the mink fasted for 5 days. The expression of the genes of interest, except for TNF-α, correlated with each other and with the liver fat content. The mRNA levels were found to change more rapidly below n-3/n-6 polyunsaturated fatty acid ratio threshold of 0.15. Following re-feeding, hepatocyte morphology and mRNA abundance returned to pre-fasting levels. Within the studied timeframe, evidence for ER stress, adipogenic transformation, and liver inflammation suggested incipient transition from steatosis to steatohepatitis with potential for development of more severe liver disease. This may present a possibility to influence disease progression before histologically observable steatohepatitis. PMID:25079677

  7. The yeast ER-intramembrane protease Ypf1 refines nutrient sensing by regulating transporter abundance.

    PubMed

    Avci, Dönem; Fuchs, Shai; Schrul, Bianca; Fukumori, Akio; Breker, Michal; Frumkin, Idan; Chen, Chia-Yi; Biniossek, Martin L; Kremmer, Elisabeth; Schilling, Oliver; Steiner, Harald; Schuldiner, Maya; Lemberg, Marius K

    2014-12-01

    Proteolysis by aspartyl intramembrane proteases such as presenilin and signal peptide peptidase (SPP) underlies many cellular processes in health and disease. Saccharomyces cerevisiae encodes a homolog that we named yeast presenilin fold 1 (Ypf1), which we verify to be an SPP-type protease that localizes to the endoplasmic reticulum (ER). Our work shows that Ypf1 functionally interacts with the ER-associated degradation (ERAD) factors Dfm1 and Doa10 to regulate the abundance of nutrient transporters by degradation. We demonstrate how this noncanonical branch of the ERAD pathway, which we termed "ERAD regulatory" (ERAD-R), responds to ligand-mediated sensing as a trigger. More generally, we show that Ypf1-mediated posttranslational regulation of plasma membrane transporters is indispensible for early sensing and adaptation to nutrient depletion. The combination of systematic analysis alongside mechanistic details uncovers a broad role of intramembrane proteolysis in regulating secretome dynamics. PMID:25454947

  8. Origin of cosmic chemical abundances

    NASA Astrophysics Data System (ADS)

    Maio, Umberto; Tescari, Edoardo

    2015-11-01

    Cosmological N-body hydrodynamic computations following atomic and molecular chemistry (e-, H, H+, H-, He, He+, He++, D, D+, H2, H_2^+, HD, HeH+), gas cooling, star formation and production of heavy elements (C, N, O, Ne, Mg, Si, S, Ca, Fe, etc.) from stars covering a range of mass and metallicity are used to explore the origin of several chemical abundance patterns and to study both the metal and molecular content during simulated galaxy assembly. The resulting trends show a remarkable similarity to up-to-date observations of the most metal-poor damped Lyman α absorbers at redshift z ≳ 2. These exhibit a transient nature and represent collapsing gaseous structures captured while cooling is becoming effective in lowering the temperature below ˜ 104 K, before they are disrupted by episodes of star formation or tidal effects. Our theoretical results agree with the available data for typical elemental ratios, such as [C/O], [Si/Fe], [O/Fe], [Si/O], [Fe/H], [O/H] at redshifts z ˜ 2-7. Correlations between H I and H2 abundances show temporal and local variations and large spreads as a result of the increasing cosmic star formation activity from z ˜ 6 to 3. The scatter we find in the abundance ratios is compatible with the observational data and is explained by simultaneous enrichment by sources from different stellar phases or belonging to different stellar populations. Simulated synthetic spectra support the existence of metal-poor cold clumps with large optical depth at z ˜ 6 that could be potential Population III sites at low or intermediate redshift. The expected dust content is in line with recent determinations.

  9. Spectral Analysis and Experimental Modeling of Ice Accretion Roughness

    NASA Technical Reports Server (NTRS)

    Orr, D. J.; Breuer, K. S.; Torres, B. E.; Hansman, R. J., Jr.

    1996-01-01

    A self-consistent scheme for relating wind tunnel ice accretion roughness to the resulting enhancement of heat transfer is described. First, a spectral technique of quantitative analysis of early ice roughness images is reviewed. The image processing scheme uses a spectral estimation technique (SET) which extracts physically descriptive parameters by comparing scan lines from the experimentally-obtained accretion images to a prescribed test function. Analysis using this technique for both streamwise and spanwise directions of data from the NASA Lewis Icing Research Tunnel (IRT) are presented. An experimental technique is then presented for constructing physical roughness models suitable for wind tunnel testing that match the SET parameters extracted from the IRT images. The icing castings and modeled roughness are tested for enhancement of boundary layer heat transfer using infrared techniques in a "dry" wind tunnel.

  10. Analysis and comparison between rough channel and pipe flows

    NASA Astrophysics Data System (ADS)

    Sassun, David; Flores, Oscar; Orlandi, Paolo

    2016-04-01

    Direct numerical simulations of turbulent channel and pipe flows are presented to highlight the effect of roughness at low Reynolds number (Reτ = 180 ‑ 360). Several surfaces are reproduced with the immersed boundaries method, allowing a one-to-one comparison of the two canonical flows. In general, all rough surfaces produce the same effect on the flow in pipes and channels, with small differences in the roughness function, RMS velocities and spectral energy density of pipes and channels. The only exception is for the rough surfaces made of longitudinal bars. In particular, the triangular bars (riblets) show drag reduction in the channel and drag increase in the pipe. This behaviour is linked to the development of spanwise rollers and wide u-structures near the plane of the crest of the pipe.

  11. Analysis of Surface Roughness at Overlapping Laser Shock Peening

    NASA Astrophysics Data System (ADS)

    Dai, F. Z.; Zhang, Z. D.; Zhou, J. Z.; Lu, J. Z.; Zhang, Y. K.

    2016-02-01

    The overlapping effects on surface roughness are studied when samples are treated by laser shock peening (LSP). Surface roughness of overlapped circular laser spot is calculated by ISO 25178 height parameters. The usually used overlapping styles namely isosceles-right-triangle-style (AAP) and equilateral-triangle-style (AAA) are carefully investigated when the overlapping degree in x-axis (ηx) is below 50%. Surface roughness of isosceles-right-triangle-style attains its minimum value at ηx of 29.3%, and attains its maximum value at ηx of 43.6%. Surface roughness of equilateral-triangle-style attains its minimum value at ηx of 42.3%, and attains its maximum value at ηx of 32%. Experimental results are well consistent with theoretical analysis.

  12. Mead Crater, Venus - Aerodynamic roughness of wind streaks

    NASA Astrophysics Data System (ADS)

    Williams, K. K.; Greeley, R.

    1997-03-01

    Radar backscatter images of Venus returned by the Magellan spacecraft revealed many aeolian features on the planet's surface. While much work has focused on terrestrial wind streaks, the harsh environment of Venus limits direct measurement of surface properties, such as aerodynamic roughness, that affect aeolian features on that planet. However, a correlation between radar backscatter and aerodynamic roughness (Z0) for the S-band radar system on Magellan can be used to study the aerodynamic roughnesses of areas in which Venusian wind streaks occur. The aerodynamic roughness of areas with both radar-bright and radar-dark wind streaks near Mead crater are calculated and compared to z0 values measured on Earth in order to compare the surface of Venus with known terrestrial surface textures.

  13. Surface Roughness Measurement on a Wing Aircraft by Speckle Correlation

    PubMed Central

    Salazar, Félix; Barrientos, Alberto

    2013-01-01

    The study of the damage of aeronautical materials is important because it may change the microscopic surface structure profiles. The modification of geometrical surface properties can cause small instabilities and then a displacement of the boundary layer. One of the irregularities we can often find is surface roughness. Due to an increase of roughness and other effects, there may be extra momentum losses in the boundary layer and a modification in the parasite drag. In this paper we present a speckle method for measuring the surface roughness on an actual unmanned aircraft wing. The results show an inhomogeneous roughness distribution on the wing, as expected according to the anisotropic influence of the winds over the entire wing geometry. A calculation of the uncertainty of the technique is given. PMID:24013488

  14. 7 CFR 51.776 - Slightly rough texture.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... texture. Slightly rough texture means that the skin may be slightly thick but not excessively thick, materially ridged or grooved. “Slightly thick” means that the skin thickness does not average more than...

  15. Chemical basis of rough and smooth variation in mycobacteria.

    PubMed Central

    Belisle, J T; Brennan, P J

    1989-01-01

    Rough and smooth colony variants of Mycobacterium kansasii were compared with respect to surface glycolipid composition. Thin-layer chromatography of the native glycolipid antigens, gas chromatography of the constituent sugars, and in situ probing with an appropriate monoclonal antibody by colony dot blot enzyme-linked immunosorbent assay and immunogold labeling demonstrated that all M. kansasii strains of smooth colony morphology contain on their surfaces the recently described trehalose-containing lipooligosaccharides, whereas all rough variants were devoid of such surface antigens. Yet all strains, rough and smooth, contained another glycolipid, the M. kansasii-specific phenolic glycolipid. Previous studies by others had shown that the rough forms of M. kansasii persist longer than smooth variants in experimentally infected mice. Therefore, this study may provide some insight into the question of the chemical basis of pathogenesis in certain mycobacteria. Images PMID:2722755

  16. Wetting failure of hydrophilic surfaces promoted by surface roughness

    PubMed Central

    Zhao, Meng-Hua; Chen, Xiao-Peng; Wang, Qing

    2014-01-01

    Wetting failure is of vital importance to many physical phenomena, such as industrial coating and drop emission. Here we show when and how the surface roughness promotes the destabilization of a moving contact line on a hydrophilic surface. Beyond the balance of the driving force and viscous resistance where a stable wetting interface is sustained, wetting failure occurs and is modified by the roughness of the surface. The promoting effect arises only when the wetting velocity is high enough to create a gas-liquid-solid composite interface in the vicinity of the moving contact line, and it is a function of the intrinsic contact angle and proportion of solid tops. We propose a model to explain splashes of rough solid spheres impacting into liquids. It reveals a novel concept that dynamic wetting on hydrophilic rough surfaces can be similar to that on hydrophobic surfaces, and brings a new way to design surfaces with specific wetting properties. PMID:24948390

  17. Interface Roughness Evolution in Sputtered WSi2/Si Multilayers

    SciTech Connect

    Wang,Y.; Zhou, H.; Zhou, L.; Headrick, R.; Macrander, A.; Ozcan, A.

    2007-01-01

    We report on the growth of WSi{sub 2} and Si amorphous thin films by dc magnetron sputtering. In situ synchrotron x-ray scattering with high temporal resolution has been employed to probe the surface and interface roughness during film deposition. It is found that the WSi{sub 2}/Si multilayer surface alternately roughens and smoothes during deposition; while the Si layer roughness monotonically, the WSi{sub 2} layer is observed to smooth out when deposited on an initially rough surface. Subsequent deposition of the next layer effectively freezes in the surface morphology of the previous layer in each case. Energetic neutrals and ions assisting the growth may play a role in inducing this pronounced alternating pattern in the roughness.

  18. Modeling of surface roughness effects on glaze ice accretion

    NASA Technical Reports Server (NTRS)

    Hansman, R. John, Jr.; Yamaguchi, Keiko; Berkowitz, Brian; Potapczuk, M.

    1989-01-01

    The cause and effects of roughness on accreting glaze ice surfaces were studied with microvideo observations. Distinct zones of surface water behavior were observed, including a smooth wet zone in the stagnation region with a uniform water film, a rough zone where surface tension effects caused coalescence of surface water into stationary beads, and a zone where roughness elements grow into horn shapes. In addition, a zone where surface water ran back as rivulets and a dry zone where rime feathers formed were observed. The locations and behaviors of these zones are discussed. A simple multizone modification to the glaze ice accretion model is proposed to include spatial variability in surface roughness. Two test cases using the multizone model showed significant improvements for the prediction of glaze ice shapes.

  19. Ice friction: The effects of surface roughness, structure, and hydrophobicity

    NASA Astrophysics Data System (ADS)

    Kietzig, Anne-Marie; Hatzikiriakos, Savvas G.; Englezos, Peter

    2009-07-01

    The effect of surface roughness, structure, and hydrophobicity on ice friction is studied systematically over a wide range of temperature and sliding speeds using several metallic interfaces. Hydrophobicity in combination with controlled roughness at the nanoscale is achieved by femtosecond laser irradiation to mimic the lotus effect on the slider's surface. The controlled roughness significantly increases the coefficient of friction at low sliding speeds and temperatures well below the ice melting point. However, at temperatures close to the melting point and relatively higher speeds, roughness and hydrophobicity significantly decrease ice friction. This decrease in friction is mainly due to the suppression of capillary bridges in spite of the presence of surface asperities that facilitate their formation. Finally, grooves oriented in the sliding direction also significantly decrease friction in the low velocity range compared to scratches and grooves randomly distributed over a surface.

  20. Surface roughness measurement on a wing aircraft by speckle correlation.

    PubMed

    Salazar, Félix; Barrientos, Alberto

    2013-01-01

    The study of the damage of aeronautical materials is important because it may change the microscopic surface structure profiles. The modification of geometrical surface properties can cause small instabilities and then a displacement of the boundary layer. One of the irregularities we can often find is surface roughness. Due to an increase of roughness and other effects, there may be extra momentum losses in the boundary layer and a modification in the parasite drag. In this paper we present a speckle method for measuring the surface roughness on an actual unmanned aircraft wing. The results show an inhomogeneous roughness distribution on the wing, as expected according to the anisotropic influence of the winds over the entire wing geometry. A calculation of the uncertainty of the technique is given. PMID:24013488