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  1. Regular Patterns for Proteome-Wide Distribution of Protein Abundance across Species

    PubMed Central

    Jiang, Ying; Ying, Wantao; Wu, Songfeng; Zhu, Yunping; Liu, Siqi; Yang, Pengyuan; Qian, Xiaohong; He, Fuchu

    2012-01-01

    A proteome of the bio-entity, including cell, tissue, organ, and organism, consists of proteins of diverse abundance. The principle that determines the abundance of different proteins in a proteome is of fundamental significance for an understanding of the building blocks of the bio-entity. Here, we report three regular patterns in the proteome-wide distribution of protein abundance across species such as human, mouse, fly, worm, yeast, and bacteria: in most cases, protein abundance is positively correlated with the protein's origination time or sequence conservation during evolution; it is negatively correlated with the protein's domain number and positively correlated with domain coverage in protein structure, and the correlations became stronger during the course of evolution; protein abundance can be further stratified by the function of the protein, whereby proteins that act on material conversion and transportation (mass category) are more abundant than those that act on information modulation (information category). Thus, protein abundance is intrinsically related to the protein's inherent characters of evolution, structure, and function. PMID:22427835

  2. Genome-wide characterization of microsatellites in Triticeae species: abundance, distribution and evolution.

    PubMed

    Deng, Pingchuan; Wang, Meng; Feng, Kewei; Cui, Licao; Tong, Wei; Song, Weining; Nie, Xiaojun

    2016-01-01

    Microsatellites are an important constituent of plant genome and distributed across entire genome. In this study, genome-wide analysis of microsatellites in 8 Triticeae species and 9 model plants revealed that microsatellite characteristics were similar among the Triticeae species. Furthermore, genome-wide microsatellite markers were designed in wheat and then used to analyze the evolutionary relationship of wheat and other Triticeae species. Results displayed that Aegilops tauschii was found to be the closest species to Triticum aestivum, followed by Triticum urartu, Triticum turgidum and Aegilops speltoides, while Triticum monococcum, Aegilops sharonensis and Hordeum vulgare showed a relatively lower PCR amplification effectivity. Additionally, a significantly higher PCR amplification effectivity was found in chromosomes at the same subgenome than its homoeologous when these markers were subjected to search against different chromosomes in wheat. After a rigorous screening process, a total of 20,666 markers showed high amplification and polymorphic potential in wheat and its relatives, which were integrated with the public available wheat markers and then anchored to the genome of wheat (CS). This study not only provided the useful resource for SSR markers development in Triticeae species, but also shed light on the evolution of polyploid wheat from the perspective of microsatellites. PMID:27561724

  3. Genome-wide characterization of microsatellites in Triticeae species: abundance, distribution and evolution

    PubMed Central

    Deng, Pingchuan; Wang, Meng; Feng, Kewei; Cui, Licao; Tong, Wei; Song, Weining; Nie, Xiaojun

    2016-01-01

    Microsatellites are an important constituent of plant genome and distributed across entire genome. In this study, genome-wide analysis of microsatellites in 8 Triticeae species and 9 model plants revealed that microsatellite characteristics were similar among the Triticeae species. Furthermore, genome-wide microsatellite markers were designed in wheat and then used to analyze the evolutionary relationship of wheat and other Triticeae species. Results displayed that Aegilops tauschii was found to be the closest species to Triticum aestivum, followed by Triticum urartu, Triticum turgidum and Aegilops speltoides, while Triticum monococcum, Aegilops sharonensis and Hordeum vulgare showed a relatively lower PCR amplification effectivity. Additionally, a significantly higher PCR amplification effectivity was found in chromosomes at the same subgenome than its homoeologous when these markers were subjected to search against different chromosomes in wheat. After a rigorous screening process, a total of 20,666 markers showed high amplification and polymorphic potential in wheat and its relatives, which were integrated with the public available wheat markers and then anchored to the genome of wheat (CS). This study not only provided the useful resource for SSR markers development in Triticeae species, but also shed light on the evolution of polyploid wheat from the perspective of microsatellites. PMID:27561724

  4. Genome-wide survey and analysis of microsatellites in the Pacific oyster genome: abundance, distribution, and potential for marker development

    NASA Astrophysics Data System (ADS)

    Wang, Jiafeng; Qi, Haigang; Li, Li; Zhang, Guofan

    2014-01-01

    Microsatellites are a ubiquitous component of the eukaryote genome and constitute one of the most popular sources of molecular markers for genetic studies. However, no data are currently available regarding microsatellites across the entire genome in oysters, despite their importance to the aquaculture industry. We present the first genome-wide investigation of microsatellites in the Pacific oyster Crassostrea gigas by analysis of the complete genome, resequencing, and expression data. The Pacific oyster genome is rich in microsatellites. A total of 604 653 repeats were identified, in average of one locus per 815 base pairs (bp). A total of 12 836 genes had coding repeats, and 7 332 were expressed normally, including genes with a wide range of molecular functions. Compared with 20 different species of animals, microsatellites in the oyster genome typically exhibited 1) an intermediate overall frequency; 2) relatively uniform contents of (A)n and (C)n repeats and abundant long (C)n repeats (≥24 bp); 3) large average length of (AG)n repeats; and 4) scarcity of trinucleotide repeats. The microsatellite-flanking regions exhibited a high degree of polymorphism with a heterozygosity rate of around 2.0%, but there was no correlation between heterozygosity and microsatellite abundance. A total of 19 462 polymorphic microsatellites were discovered, and dinucleotide repeats were the most active, with over 26% of loci found to harbor allelic variations. In all, 7 451 loci with high potential for marker development were identified. Better knowledge of the microsatellites in the oyster genome will provide information for the future design of a wide range of molecular markers and contribute to further advancements in the field of oyster genetics, particularly for molecular-based selection and breeding.

  5. The shape of terrestrial abundance distributions.

    PubMed

    Alroy, John

    2015-09-01

    Ecologists widely accept that the distribution of abundances in most communities is fairly flat but heavily dominated by a few species. The reason for this is that species abundances are thought to follow certain theoretical distributions that predict such a pattern. However, previous studies have focused on either a few theoretical distributions or a few empirical distributions. I illustrate abundance patterns in 1055 samples of trees, bats, small terrestrial mammals, birds, lizards, frogs, ants, dung beetles, butterflies, and odonates. Five existing theoretical distributions make inaccurate predictions about the frequencies of the most common species and of the average species, and most of them fit the overall patterns poorly, according to the maximum likelihood-related Kullback-Leibler divergence statistic. Instead, the data support a low-dominance distribution here called the "double geometric." Depending on the value of its two governing parameters, it may resemble either the geometric series distribution or the lognormal series distribution. However, unlike any other model, it assumes both that richness is finite and that species compete unequally for resources in a two-dimensional niche landscape, which implies that niche breadths are variable and that trait distributions are neither arrayed along a single dimension nor randomly associated. The hypothesis that niche space is multidimensional helps to explain how numerous species can coexist despite interacting strongly. PMID:26601249

  6. The shape of terrestrial abundance distributions

    PubMed Central

    Alroy, John

    2015-01-01

    Ecologists widely accept that the distribution of abundances in most communities is fairly flat but heavily dominated by a few species. The reason for this is that species abundances are thought to follow certain theoretical distributions that predict such a pattern. However, previous studies have focused on either a few theoretical distributions or a few empirical distributions. I illustrate abundance patterns in 1055 samples of trees, bats, small terrestrial mammals, birds, lizards, frogs, ants, dung beetles, butterflies, and odonates. Five existing theoretical distributions make inaccurate predictions about the frequencies of the most common species and of the average species, and most of them fit the overall patterns poorly, according to the maximum likelihood–related Kullback-Leibler divergence statistic. Instead, the data support a low-dominance distribution here called the “double geometric.” Depending on the value of its two governing parameters, it may resemble either the geometric series distribution or the lognormal series distribution. However, unlike any other model, it assumes both that richness is finite and that species compete unequally for resources in a two-dimensional niche landscape, which implies that niche breadths are variable and that trait distributions are neither arrayed along a single dimension nor randomly associated. The hypothesis that niche space is multidimensional helps to explain how numerous species can coexist despite interacting strongly. PMID:26601249

  7. On protein abundance distributions in complex mixtures

    PubMed Central

    2013-01-01

    Mass spectrometry, an analytical technique that measures the mass-to-charge ratio of ionized atoms or molecules, dates back more than 100 years, and has both qualitative and quantitative uses for determining chemical and structural information. Quantitative proteomic mass spectrometry on biological samples focuses on identifying the proteins present in the samples, and establishing the relative abundances of those proteins. Such protein inventories create the opportunity to discover novel biomarkers and disease targets. We have previously introduced a normalized, label-free method for quantification of protein abundances under a shotgun proteomics platform (Griffin et al., 2010). The introduction of this method for quantifying and comparing protein levels leads naturally to the issue of modeling protein abundances in individual samples. We here report that protein abundance levels from two recent proteomics experiments conducted by the authors can be adequately represented by Sichel distributions. Mathematically, Sichel distributions are mixtures of Poisson distributions with a rather complex mixing distribution, and have been previously and successfully applied to linguistics and species abundance data. The Sichel model can provide a direct measure of the heterogeneity of protein abundances, and can reveal protein abundance differences that simpler models fail to show. PMID:23360617

  8. Distribution, abundance and bionomics of Aedes albopictus in southern Texas.

    PubMed

    Womack, M L

    1993-09-01

    A survey was conducted for Aedes albopictus in southern Texas during the summer of 1992. Thirty-five new country records were added to the distribution of this imported mosquito in Texas. Aedes albopictus was widely distributed throughout the ecological regions in the survey area, but its abundance decreased in counties adjacent to the Rio Grande River. However, these counties had high densities of Aedes aegypti. PMID:8245952

  9. How selection structures species abundance distributions

    PubMed Central

    Magurran, Anne E.; Henderson, Peter A.

    2012-01-01

    How do species divide resources to produce the characteristic species abundance distributions seen in nature? One way to resolve this problem is to examine how the biomass (or capacity) of the spatial guilds that combine to produce an abundance distribution is allocated among species. Here we argue that selection on body size varies across guilds occupying spatially distinct habitats. Using an exceptionally well-characterized estuarine fish community, we show that biomass is concentrated in large bodied species in guilds where habitat structure provides protection from predators, but not in those guilds associated with open habitats and where safety in numbers is a mechanism for reducing predation risk. We further demonstrate that while there is temporal turnover in the abundances and identities of species that comprise these guilds, guild rank order is conserved across our 30-year time series. These results demonstrate that ecological communities are not randomly assembled but can be decomposed into guilds where capacity is predictably allocated among species. PMID:22787020

  10. Attenuation of species abundance distributions by sampling.

    PubMed

    Shimadzu, Hideyasu; Darnell, Ross

    2015-04-01

    Quantifying biodiversity aspects such as species presence/ absence, richness and abundance is an important challenge to answer scientific and resource management questions. In practice, biodiversity can only be assessed from biological material taken by surveys, a difficult task given limited time and resources. A type of random sampling, or often called sub-sampling, is a commonly used technique to reduce the amount of time and effort for investigating large quantities of biological samples. However, it is not immediately clear how (sub-)sampling affects the estimate of biodiversity aspects from a quantitative perspective. This paper specifies the effect of (sub-)sampling as attenuation of the species abundance distribution (SAD), and articulates how the sampling bias is induced to the SAD by random sampling. The framework presented also reveals some confusion in previous theoretical studies. PMID:26064626

  11. Attenuation of species abundance distributions by sampling

    PubMed Central

    Shimadzu, Hideyasu; Darnell, Ross

    2015-01-01

    Quantifying biodiversity aspects such as species presence/ absence, richness and abundance is an important challenge to answer scientific and resource management questions. In practice, biodiversity can only be assessed from biological material taken by surveys, a difficult task given limited time and resources. A type of random sampling, or often called sub-sampling, is a commonly used technique to reduce the amount of time and effort for investigating large quantities of biological samples. However, it is not immediately clear how (sub-)sampling affects the estimate of biodiversity aspects from a quantitative perspective. This paper specifies the effect of (sub-)sampling as attenuation of the species abundance distribution (SAD), and articulates how the sampling bias is induced to the SAD by random sampling. The framework presented also reveals some confusion in previous theoretical studies. PMID:26064626

  12. Detailed Chemical Abundances of Planet-Hosting Wide Binary Systems

    NASA Astrophysics Data System (ADS)

    Mack, Claude E.; Schuler, Simon C.; Stassun, Keivan; Pepper, Joshua

    2015-01-01

    We present a detailed chemical abundance analysis of planet-hosting wide binary systems. Each of these binary systems consists of two stars with similar spectral types (ranging from G2V - K2V), and in each system, at least one star hosts a giant planet with an orbital pericenter ~< 0.5 AU. We investigate if giant planets on such orbits could have scattered inner rocky planets into the atmospheres of their host stars, and thereby imprint a detectable chemical signature in the stellar photospheric abundances. Using high-resolution, high signal-to-noise echelle spectra, we derive the chemical abundances ([X/H]) of 15 elements covering a range of condensation temperatures (Tc). For stars in our sample with approximately solar metallicity, the refractory elements (Tc > 900 K) show a positive correlation between [X/H] and Tc. However, for stars with super-solar metallicities, the refractory elements show a negative correlation between [X/H] and Tc. We interpret these results in the context of numerical simulations of giant planet migration that predict the accretion of hydrogen-depleted rocky material by the host star. We demonstrate that a simple model for a solar-metallicity star accreting material with Earth-like composition predicts a positive correlation between [X/H] and Tc, while for a supersolar-metallicity star the model predicts a negative correlation. The stark contrast between the predicted correlations for solar-metallicity and supersolar-metallicity stars may indicate that extracting any chemical signature of rocky planetary accretion is particularly challenging for very metal-rich stars.

  13. Detailed Chemical Abundances of Planet-Hosting Wide Binary Systems

    NASA Astrophysics Data System (ADS)

    Mack, Claude Ernest; Schuler, Simon; Stassun, Keivan

    2015-08-01

    We present a detailed chemical abundance analysis of planet-hosting wide binary systems. Each of these binary systems consists of two stars with similar spectral types (ranging from G2V - K2V), and in each system, at least one star hosts a giant planet with an orbital pericenter ~< 0.5 AU. We examine the photospheric abundances of the host stars to determine if they have ingested rocky planetary material as a result of the close-in giant planets scattering inner rocky planets into the star as they migrated to their present-day locations. Using high-resolution, high signal-to-noise echelle spectra, for both stars in each system we derive the chemical abundances ([X/H]) of 15 elements covering a range of condensation temperatures (Tc). For stars in our sample with approximately solar metallicity, the refractory elements (Tc > 900 K) show a positive correlation between [X/H] and Tc. However, for stars with super-solar metallicities, the refractory elements show a negative correlation between [X/H] and Tc. We interpret these results in the context of numerical simulations of giant planet migration that predict the accretion of hydrogen-depleted rocky material by the host star. We demonstrate that a simple model for a solar-metallicity star accreting material with Earth-like composition predicts a positive correlation between [X/H] and Tc, while for a supersolar-metallicity star the model predicts a negative correlation. The stark contrast between the predicted correlations for solar-metallicity and supersolar-metallicity stars may indicate that extracting any chemical signature of rocky planetary accretion is particularly challenging for very metal-rich stars.

  14. Cross-Scale Interactions and the Distribution-Abundance Relationship

    PubMed Central

    Werner, Earl E.; Davis, Christopher J.; Skelly, David K.; Relyea, Rick A.; Benard, Michael F.; McCauley, Shannon J.

    2014-01-01

    Positive interspecific relationships between local abundance and extent of regional distribution are among the most ubiquitous patterns in ecology. Although multiple hypotheses have been proposed, the mechanisms underlying distribution-abundance (d-a) relationships remain poorly understood. We examined the intra- and interspecific distribution-abundance relationships for a metacommunity of 13 amphibian species sampled for 15 consecutive years. Mean density of larvae in occupied ponds was positively related to number of ponds occupied by species; employing the fraction of ponds uniquely available to each species this same relationship sharply decelerates. The latter relationship suggested that more abundant species inhabited most available habitats annually, whereas rarer species were dispersal limited. We inferred the mechanisms responsible for this pattern based on the dynamics of one species, Pseudacris triseriata, which transitioned between a rare, narrowly distributed species to a common, widely distributed species and then back again. Both transitions were presaged by marked changes in mean local densities driven by climatic effects on habitat quality. We identified threshold densities separating these population regime shifts that differed with landscape configuration. Our data suggest that these transitions were caused by strong cross-scale interactions between local resource/niche processes and larger scale metapopulation processes. The patterns we observed have relevance for understanding the mechanisms of interspecific d-a relationships and critical thresholds associated with habitat fragmentation. PMID:24875899

  15. Cross-scale interactions and the distribution-abundance relationship.

    PubMed

    Werner, Earl E; Davis, Christopher J; Skelly, David K; Relyea, Rick A; Benard, Michael F; McCauley, Shannon J

    2014-01-01

    Positive interspecific relationships between local abundance and extent of regional distribution are among the most ubiquitous patterns in ecology. Although multiple hypotheses have been proposed, the mechanisms underlying distribution-abundance (d-a) relationships remain poorly understood. We examined the intra- and interspecific distribution-abundance relationships for a metacommunity of 13 amphibian species sampled for 15 consecutive years. Mean density of larvae in occupied ponds was positively related to number of ponds occupied by species; employing the fraction of ponds uniquely available to each species this same relationship sharply decelerates. The latter relationship suggested that more abundant species inhabited most available habitats annually, whereas rarer species were dispersal limited. We inferred the mechanisms responsible for this pattern based on the dynamics of one species, Pseudacris triseriata, which transitioned between a rare, narrowly distributed species to a common, widely distributed species and then back again. Both transitions were presaged by marked changes in mean local densities driven by climatic effects on habitat quality. We identified threshold densities separating these population regime shifts that differed with landscape configuration. Our data suggest that these transitions were caused by strong cross-scale interactions between local resource/niche processes and larger scale metapopulation processes. The patterns we observed have relevance for understanding the mechanisms of interspecific d-a relationships and critical thresholds associated with habitat fragmentation. PMID:24875899

  16. Assessing introduction risk using species' rank-abundance distributions.

    PubMed

    Chan, Farrah T; Bradie, Johanna; Briski, Elizabeta; Bailey, Sarah A; Simard, Nathalie; MacIsaac, Hugh J

    2015-01-22

    Mixed-species assemblages are often unintentionally introduced into new ecosystems. Analysing how assemblage structure varies during transport may provide insights into how introduction risk changes before propagules are released. Characterization of introduction risk is typically based on assessments of colonization pressure (CP, the number of species transported) and total propagule pressure (total PP, the total abundance of propagules released) associated with an invasion vector. Generally, invasion potential following introduction increases with greater CP or total PP. Here, we extend these assessments using rank-abundance distributions to examine how CP : total PP relationships change temporally in ballast water of ocean-going ships. Rank-abundance distributions and CP : total PP patterns varied widely between trans-Atlantic and trans-Pacific voyages, with the latter appearing to pose a much lower risk than the former. Responses also differed by taxonomic group, with invertebrates experiencing losses mainly in total PP, while diatoms and dinoflagellates sustained losses mainly in CP. In certain cases, open-ocean ballast water exchange appeared to increase introduction risk by uptake of new species or supplementation of existing ones. Our study demonstrates that rank-abundance distributions provide new insights into the utility of CP and PP in characterizing introduction risk. PMID:25473007

  17. Assessing introduction risk using species’ rank-abundance distributions

    PubMed Central

    Chan, Farrah T.; Bradie, Johanna; Briski, Elizabeta; Bailey, Sarah A.; Simard, Nathalie; MacIsaac, Hugh J.

    2015-01-01

    Mixed-species assemblages are often unintentionally introduced into new ecosystems. Analysing how assemblage structure varies during transport may provide insights into how introduction risk changes before propagules are released. Characterization of introduction risk is typically based on assessments of colonization pressure (CP, the number of species transported) and total propagule pressure (total PP, the total abundance of propagules released) associated with an invasion vector. Generally, invasion potential following introduction increases with greater CP or total PP. Here, we extend these assessments using rank-abundance distributions to examine how CP : total PP relationships change temporally in ballast water of ocean-going ships. Rank-abundance distributions and CP : total PP patterns varied widely between trans-Atlantic and trans-Pacific voyages, with the latter appearing to pose a much lower risk than the former. Responses also differed by taxonomic group, with invertebrates experiencing losses mainly in total PP, while diatoms and dinoflagellates sustained losses mainly in CP. In certain cases, open-ocean ballast water exchange appeared to increase introduction risk by uptake of new species or supplementation of existing ones. Our study demonstrates that rank-abundance distributions provide new insights into the utility of CP and PP in characterizing introduction risk. PMID:25473007

  18. Distribution and Abundance of Mars' Atmospheric Argon

    NASA Technical Reports Server (NTRS)

    Sprague, A. L.; Boynton, W. V.; Kerry, K. E.; Nelli, Steven; Murphy, Jim; Reedy, R. C.; Metzger, A. E.; Hunten, D. M.; Janes, K. D.; Crombie, M. K.

    2005-01-01

    One and one half Mars years (MY 26 and 27) of atmospheric Argon measurements are described and studied in the context of understanding how Argon, a minor constituent of Mars atmosphere that does not condense at Mars temperatures, can be used to study martian circulation and dynamics. Argon data are from the 2001 Mars Odyssey Gamma Subsystem (GS) of the suite of three instruments comprising the Gamma Ray Spectrometer (GRS). A comprehensive data analysis including gamma-ray production and attenuation by the atmosphere is included. Of particular interest is the enhanced abundance of Ar over the observed Ar abundance at lower latitudes at south (up to a factor of 10) and north (up to a factor of 4) polar regions during winter. Calibration of the measurements to actual Ar abundance is possible because GS measurements cover the same latitude and season as measurements made by the gas chromatograph mass spectrometer (GCMS) on Viking Landers 1 and 2 (VL1 and VL2). [2].

  19. Global distribution of microbial abundance and biomass in subseafloor sediment

    PubMed Central

    Kallmeyer, Jens; Pockalny, Robert; Adhikari, Rishi Ram; Smith, David C.; D’Hondt, Steven

    2012-01-01

    The global geographic distribution of subseafloor sedimentary microbes and the cause(s) of that distribution are largely unexplored. Here, we show that total microbial cell abundance in subseafloor sediment varies between sites by ca. five orders of magnitude. This variation is strongly correlated with mean sedimentation rate and distance from land. Based on these correlations, we estimate global subseafloor sedimentary microbial abundance to be 2.9⋅1029 cells [corresponding to 4.1 petagram (Pg) C and ∼0.6% of Earth’s total living biomass]. This estimate of subseafloor sedimentary microbial abundance is roughly equal to previous estimates of total microbial abundance in seawater and total microbial abundance in soil. It is much lower than previous estimates of subseafloor sedimentary microbial abundance. In consequence, we estimate Earth’s total number of microbes and total living biomass to be, respectively, 50–78% and 10–45% lower than previous estimates. PMID:22927371

  20. The Abundance and Distribution of Presolar Materials in Cluster IDPS

    NASA Technical Reports Server (NTRS)

    Messenger, Scott; Keller, Lindsay; Nakamura-Messenger, Keiko; Ito, Motoo

    2007-01-01

    Presolar grains and remnants of interstellar organic compounds occur in a wide range of primitive solar system materials, including meteorites, interplanetary dust particles (IDPs), and comet Wild-2 samples. Among the most abundant presolar phases are silicate stardust grains and molecular cloud material. However, these materials have also been susceptible to destruction and alteration during parent body and nebular processing. In addition to their importance as direct samples of remote and ancient astrophysical environments, presolar materials thus provide a measure of how well different primitive bodies have preserved the original solar system starting materials. The matrix normalized abundances of presolar silicate grains in meteorites range from 20 ppm in Semarkona and Bishunpur to 170 ppm for Acfer 094. The lower abundances of presolar silicates in Bishunpur and Semarkona has been ascribed to the destruction of presolar silicates during aqueous processes. Presolar silicates appear to be significantly more abundant in anhydrous IDPs, possibly because these materials did not experience parent body hydrothermal alteration. Among IDPs the estimated abundances of presolar silicates vary by more than an order of magnitude, from 480 to 5500 ppm. The wide disparity in the abundances of presolar silicates of IDPs may be a consequence of the relatively small total area analyzed in those studies and the fine grain sizes of the IDPs. Alternatively, there may be a wide range in presolar silicate abundances between different IDPs. This view is supported by the observation that 15N-rich IDPs have higher presolar silicate abundances than those with isotopically normal N.

  1. Trends in aerosol abundances and distributions

    NASA Technical Reports Server (NTRS)

    Turco, R. P.; Mccormick, M. P.; Clancy, R. T.; Curran, R.; Deluisi, J.; Hamill, P.; Kent, G.; Rosen, J. M.; Toon, O. B.; Yue, G.

    1989-01-01

    The properties of aerosols that reside in the upper atmosphere are described. Special emphasis is given to the influence these aerosols have on ozone observation systems, mainly through radiative effects, and on ambient ozone concentrations, mainly through chemical effects. It has long been appreciated that stratospheric particles can interfere with the remote sensing of ozone distribution. The mechanism and magnitude of this interference are evaluated. Separate sections deal with the optical properties of upper atmospheric aerosols, long-term trends in stratospheric aerosols, perturbations of the stratospheric aerosol layer by volcanic eruptions, and estimates of the impacts that such particles have on remotely measured ozone concentrations. Another section is devoted to a discussion of the polar stratospheric clouds (PSC's). These unique clouds, recently discovered by satellite observation, are now thought to be intimately connected with the Antarctic ozone hole. Accordingly, interest in PSC's has grown considerably in recent years. This chapter describes what we know about the morphology, physical chemistry, and microphysics of PSC's.

  2. Wide Area and Distributed Hydrogen Sensors

    SciTech Connect

    Zalosh, Robert G.; Barilo, Nick F.

    2009-09-18

    Recent advances in optical sensors show promise for the development of new wide area monitoring and distributed optical network hydrogen detection systems. Optical hydrogen sensing technologies reviewed here are: 1) open path Raman scattering systems, 2) back scattering from chemically treated solid polymer matrix optical fiber sensor cladding; and 3) shlieren and shearing interferometry imaging. Ultrasonic sensors for hydrogen release detection are also reviewed. The development status of these technologies and their demonstrated results in sensor path length, low hydrogen concentration detection ability, and response times are described and compared to the corresponding status of hydrogen spot sensor network technologies.

  3. Multiple peaks of species abundance distributions induced by sparse interactions.

    PubMed

    Obuchi, Tomoyuki; Kabashima, Yoshiyuki; Tokita, Kei

    2016-08-01

    We investigate the replicator dynamics with "sparse" symmetric interactions which represent specialist-specialist interactions in ecological communities. By considering a large self-interaction u, we conduct a perturbative expansion which manifests that the nature of the interactions has a direct impact on the species abundance distribution. The central results are all species coexistence in a realistic range of the model parameters and that a certain discrete nature of the interactions induces multiple peaks in the species abundance distribution, providing the possibility of theoretically explaining multiple peaks observed in various field studies. To get more quantitative information, we also construct a non-perturbative theory which becomes exact on tree-like networks if all the species coexist, providing exact critical values of u below which extinct species emerge. Numerical simulations in various different situations are conducted and they clarify the robustness of the presented mechanism of all species coexistence and multiple peaks in the species abundance distributions. PMID:27627322

  4. Percolation Theory for the Distribution and Abundance of Species

    NASA Astrophysics Data System (ADS)

    He, Fangliang; Hubbell, Stephen P.

    2003-11-01

    We develop and test new models that unify the mathematical relationships among the abundance of a species, the spatial dispersion of the species, the number of patches occupied by the species, the edge length of the occupied patches, and the scale on which the distribution of species is mapped. The models predict that species distributions will exhibit percolation critical thresholds, i.e., critical population abundances at which the fragmented patches (as measured by the number of patches and edge length) start to coalesce to form large patches.

  5. Effect of disjunct size distributions on foraminiferal species abundance determinations

    SciTech Connect

    Martin, R.E.; Liddell, W.D.

    1988-02-01

    Studies of foraminiferal distribution and abundance have typically employed a procedure (standard method) that entails counting approximately 300 specimens from a size range greater than some specified minimum (commonly 63 or 125 ..mu..m). This method fails to take into account that foraminifera may be found only within certain size fractions, either because of species specific size ranges or taphonomic processes (sorting, transport, abrasion). Use of a modified counting procedure (sieve method) takes into account foraminiferal size distributions. The sieve method uses counts of up to 300 specimens in each sand-size fraction (0.125-0.25, 0.25-0.5, 0.5-1, 1-2 mm) of each sample. Counts are then totaled for each sample (up to 1200 specimens per site) and used in determination of species abundances for each site. The sieve method has been of considerable utility in recognition of a foraminiferal bathymetric zonation preserved in sediment assemblages from fringing reef environments at Discovery Bay, north Jamaica. Well-documented reef zones (based on corals and physiography) are clearly defined in Q-mode cluster analysis (UPGMA) of species abundances determined using the sieve method. In contrast, individual fore reef zones are not recognized in cluster analysis of foraminiferal species abundances based on the standard method, nor by cluster analysis of species abundances within individual size fractions.

  6. Influence of edge on predator prey distribution and abundance

    NASA Astrophysics Data System (ADS)

    Ferguson, Steven H.

    2004-03-01

    I investigated the effect of spatial configuration on distribution and abundance of invertebrate trophic groups by counting soil arthropods under boxes (21 × 9.5 cm) arranged in six different patterns that varied in the amount of edge (137-305 cm). I predicted fewer individuals from the consumer trophic group (Collembola) in box groups with greater amount of edge. This prediction was based on the assumption that predators (mites, ants, spiders, centipedes) select edge during foraging and thereby reduce abundance of the less mobile consumer group under box patterns with greater edge. Consumer abundance (Collembola) was not correlated with amount of edge. Among the predator groups, mite, ant and centipede abundance related to the amount of edge of box groups. However, in contrast to predictions, abundance of these predators was negatively correlated with amount of edge in box patterns. All Collembola predators, with the exception of ants, were less clumped in distribution than Collembola. The results are inconsistent with the view that predators used box edges to predate the less mobile consumer trophic group. Alternative explanations for the spatial patterns other than predator-prey relations include (1) a negative relationship between edge and moisture, (2) a positive relationship between edge and detritus decomposition (i.e. mycelium as food for the consumer group), and (3) a negative relationship between edge and the interstices between adjacent boxes. Landscape patterns likely affect microclimate, food, and predator-prey relations and, therefore, future experimental designs need to control these factors individually to distinguish among alternative hypotheses.

  7. Global Distribution of Microbial Abundance and Biomass in Subseafloor Sediment

    NASA Astrophysics Data System (ADS)

    Kallmeyer, J.; Pockalny, R. A.; Adhikari, R. R.; Smith, D. C.; D'Hondt, S. L.

    2012-12-01

    Previously published cell counts were mostly from ocean margins and the eastern equatorial Pacific. Cell counts from these environments are generally similar from site to site and decrease logarithmically with sediment depth, although there can be sharp peaks of high cell densities in zones of anaerobic methane-oxidation. Recent counts from the South Pacific Gyre and the North Pacific Gyre are several orders of magnitude lower and show a more rapid decrease with depth than all previously published datasets. With these new data available, total microbial cell abundance in subseafloor sediment varies between sites by ca. five orders of magnitude. The differences between cell counts from ocean margins and upwelling areas and cell counts from oceanic gyres raise three questions. First, how does the abundance of microbes in subseafloor sediment vary throughout the world ocean? Second, what property or properties are likely to control that variation? Third, how does this variation affect estimates of total subseafloor sedimentary biomass and Earth's total biomass? To address these questions, we compiled our cell counts from the South Pacific Gyre, the North Pacific Gyre and the eastern equatorial Pacific Ocean with previously published counts and parameterized the cell distribution at each site and determined two parameters, (i) cell concentration at 1 mbsf and (ii) rate of decrease in cell counts with depth. Both parameters are strongly correlated with mean sedimentation rate and distance to shore. Based on these correlations, we estimate global subseafloor sedimentary microbial abundance to be 2.9*1029 cells (corresponding to 4.1 Pg C and ~0.6% of Earth's total living biomass). This estimate of subseafloor sedimentary microbial abundance is roughly equal to previous estimates of total microbial abundance in seawater and total microbial abundance in soil. It is much lower than previous estimates of subseafloor sedimentary microbial abundance. In consequence, we estimate

  8. World-wide distribution automation systems

    SciTech Connect

    Devaney, T.M.

    1994-12-31

    A worldwide power distribution automation system is outlined. Distribution automation is defined and the status of utility automation is discussed. Other topics discussed include a distribution management system, substation feeder, and customer functions, potential benefits, automation costs, planning and engineering considerations, automation trends, databases, system operation, computer modeling of system, and distribution management systems.

  9. Experimental simulation of pollinator decline causes community-wide reductions in seedling diversity and abundance.

    PubMed

    Lundgren, Rebekka; Totland, Ørjan; Lázaro, Amparo

    2016-06-01

    Pollinator decline can disrupt the mutualistic interactions between plants and pollinators and potentially affect the maintenance of plant populations. However, there is still little knowledge on how changes in pollinator abundance can affect seedling recruitment, which is essential for population persistence. We experimentally simulated a community-wide reduction in pollinator availability during four years to examine its effects on seedling recruitment in 10 perennial herbs in a Norwegian hay meadow. Our experimental reduction in pollinator availability significantly reduced community-wide seedling diversity. Overall seedling abundance was also consistently lower under reduced pollinator availability, although this effect was only significant when the most abundant plant species in the community was excluded from the analysis. Despite an overall negative effect on seedling abundance, the experimental reduction in pollinator availability had contrasting effects on individual plant species. This tended to cause a larger change in seedling species composition in the experimental than in the control plots after the four study years. Our study demonstrates for the first time a direct causal link between reduced pollinator availability and reduced plant diversity and abundance. PMID:27459773

  10. Herbivory: effects on plant abundance, distribution and population growth

    PubMed Central

    Maron, John L; Crone, Elizabeth

    2006-01-01

    Plants are attacked by many different consumers. A critical question is how often, and under what conditions, common reductions in growth, fecundity or even survival that occur due to herbivory translate to meaningful impacts on abundance, distribution or dynamics of plant populations. Here, we review population-level studies of the effects of consumers on plant dynamics and evaluate: (i) whether particular consumers have predictably more or less influence on plant abundance, (ii) whether particular plant life-history types are predictably more vulnerable to herbivory at the population level, (iii) whether the strength of plant–consumer interactions shifts predictably across environmental gradients and (iv) the role of consumers in influencing plant distributional limits. Existing studies demonstrate numerous examples of consumers limiting local plant abundance and distribution. We found larger effects of consumers on grassland than woodland forbs, stronger effects of herbivory in areas with high versus low disturbance, but no systematic or unambiguous differences in the impact of consumers based on plant life-history or herbivore feeding mode. However, our ability to evaluate these and other patterns is limited by the small (but growing) number of studies in this area. As an impetus for further study, we review strengths and challenges of population-level studies, such as interpreting net impacts of consumers in the presence of density dependence and seed bank dynamics. PMID:17002942

  11. Oceanic heterotrophic dinoflagellates: distribution, abundance, and role as microzooplankton

    SciTech Connect

    Lessard, E.J.

    1984-01-01

    The primary objectives of this thesis were to determine the distribution and abundance of heterotrophic dinoflagellates across the Gulf Stream system off Cape Hatteras and to assess the potential grazing impact of these microheterotrophs in plankton communities. A list of species encountered in this study and their trophic status based on epifluorescence is presented, as well as observations on the presence of external or internal symbionts. The abundance of heterotrophic dinoflagellates across the Gulf Stream region off Cape Hatteras was determined from bimonthly net tow samples over a year and from whole water samples in March. Their average abundance was twice that of net ciliates in the net plankton and ten times that of ciliates in the nanoplankton. An isotope technique was developed to measure grazing rates of individual dinoflaggellates and other microzooplankton which cannot be separated in natural populations on the basis of size. /sup 3/H-thymidine and /sup 14/C-bicarbonate were used to label natural heterotrophic (bacteria and bacterivores) and autotrophic (phytoplankton and herbivores) food, respectively. Estimates of the grazing impact of heterotrophic kinoflagellates relative to other groups of heterotrophs on phytoplankton and bacteria were made by combining abundance data and clearance rates. Such calculations suggested that heterotrophic dinoflagellates may be an important group of grazers in oceanic waters.

  12. The Abundance and Distribution of Presolar Materials in Cluster IDPS

    NASA Technical Reports Server (NTRS)

    Messenger, Scott; Keller, Lindsay; Nakamura-Messenger, Keiko; Ito, Motoo

    2007-01-01

    Presolar grains and remnants of interstellar organic compounds occur in a wide range of primitive solar system materials, including meteorites, interplanetary dust particles (IDPs), and comet Wild-2 samples. Among the most abundant presolar phases are silicate stardust grains and molecular cloud material. However, these materials have also been susceptible to destruction and alteration during parent body and nebular processing. In addition to their importance as direct samples of remote and ancient astrophysical environments, presolar materials thus provide a measure of how well different primitive bodies have preserved the original solar system starting materials.

  13. Non-Gaussian error distribution of 7Li abundance measurements

    NASA Astrophysics Data System (ADS)

    Crandall, Sara; Houston, Stephen; Ratra, Bharat

    2015-07-01

    We construct the error distribution of 7Li abundance measurements for 66 observations (with error bars) used by Spite et al. (2012) that give A(Li) = 2.21 ± 0.065 (median and 1σ symmetrized error). This error distribution is somewhat non-Gaussian, with larger probability in the tails than is predicted by a Gaussian distribution. The 95.4% confidence limits are 3.0σ in terms of the quoted errors. We fit the data to four commonly used distributions: Gaussian, Cauchy, Student’s t and double exponential with the center of the distribution found with both weighted mean and median statistics. It is reasonably well described by a widened n = 8 Student’s t distribution. Assuming Gaussianity, the observed A(Li) is 6.5σ away from that expected from standard Big Bang Nucleosynthesis (BBN) given the Planck observations. Accounting for the non-Gaussianity of the observed A(Li) error distribution reduces the discrepancy to 4.9σ, which is still significant.

  14. Apparent competition drives community-wide parasitism rates and changes in host abundance across ecosystem boundaries.

    PubMed

    Frost, Carol M; Peralta, Guadalupe; Rand, Tatyana A; Didham, Raphael K; Varsani, Arvind; Tylianakis, Jason M

    2016-01-01

    Species have strong indirect effects on others, and predicting these effects is a central challenge in ecology. Prey species sharing an enemy (predator or parasitoid) can be linked by apparent competition, but it is unknown whether this process is strong enough to be a community-wide structuring mechanism that could be used to predict future states of diverse food webs. Whether species abundances are spatially coupled by enemy movement across different habitats is also untested. Here, using a field experiment, we show that predicted apparent competitive effects between species, mediated via shared parasitoids, can significantly explain future parasitism rates and herbivore abundances. These predictions are successful even across edges between natural and managed forests, following experimental reduction of herbivore densities by aerial spraying of insecticide over 20 hectares. This result shows that trophic indirect effects propagate across networks and habitats in important, predictable ways, with implications for landscape planning, invasion biology and biological control. PMID:27577948

  15. Geographic variation in cowbird distribution, abundance, and parasitism

    USGS Publications Warehouse

    Morrison, M.L.; Hahn, D.C.

    2002-01-01

    We evaluated geographical patterns in the abundance and distribution of Brown-headed Cowbirds (Molothrus ater), and in the frequency of cowbird parasitism, across North America in relation to habitat fragmentation. We found no distinctive parasitism patterns at the national or even regional scales, but the species is most abundant in the Great Plains, the heart of their original range, and least common in the southeastern U.S. This situation is dynamic, because both the Brown-headed and two other cowbird species are actively expanding their ranges in the southern U.S. We focused almost entirely in this paper on the Brown-headed Cowbird, because it is the only endemic North American cowbird, its distribution is much wider, and it has been much more intensively studied. We determined that landscape is the most meaningful unit of scale for comparing cowbird parasitism patterns as, for example, in comparisons of northeastern and central hardwood forests within agricultural matrices, and suburbanized areas versus western coniferous forests. We concluded that cowbird parasitism patterns were broadly similar within all landscapes. Even comparisons between prominently dissimilar landscapes, such as hardwoods in agriculture and suburbia versus coniferous forest, display a striking similarity in the responses of cowbirds. Our review clearly indicated that proximity of feeding areas is the key factor influencing presence and parasitism patterns within the landscape. We considered intensity of landscape fragmentation from forest-dominated landscapes altered in a forest management context to fragmentation characterized by mixed suburbanization or agricultural development. Our review consistently identified an inverse relationship between extent of forest cover across the landscape and cowbird presence. Invariably, the variation seen in parasitism frequencies within a region was at least partially explained as a response to changes in forest cover. The most salient geographic

  16. Food Abundance Determines Distribution and Density of A Frugivorous Bird Across Seasons

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Although food abundance is a principal determinant of distribution and abundance of many animals, most previous studies have not quantitatively assessed its importance relative to other factors that can determine species distributions. We estimated frugivorous phainopepla (Phainopepla nitens) occupa...

  17. Analytical formulae for computing dominance from species-abundance distributions.

    PubMed

    Fung, Tak; Villain, Laura; Chisholm, Ryan A

    2015-12-01

    The evenness of an ecological community affects ecosystem structure, functioning and stability, and has implications for biodiversity conservation. In uneven communities, most species are rare while a few dominant species drive ecosystem-level properties. In even communities, dominance is lower, with possibly many species playing key ecological roles. The dominance aspect of evenness can be measured as a decreasing function of the proportion of species required to make up a fixed fraction (e.g., half) of individuals in a community. Here we sought general rules about dominance in ecological communities by linking dominance mathematically to the parameters of common theoretical species-abundance distributions (SADs). We found that if a community's SAD was log-series or lognormal, then dominance was almost inevitably high, with fewer than 40% of species required to account for 90% of all individuals. Dominance for communities with an exponential SAD was lower but still typically high, with fewer than 40% of species required to account for 70% of all individuals. In contrast, communities with a gamma SAD only exhibited high dominance when the average species abundance was below a threshold of approximately 100. Furthermore, we showed that exact values of dominance were highly scale-dependent, exhibiting non-linear trends with changing average species abundance. We also applied our formulae to SADs derived from a mechanistic community model to demonstrate how dominance can increase with environmental variance. Overall, our study provides a rigorous basis for theoretical explorations of the dynamics of dominance in ecological communities, and how this affects ecosystem functioning and stability. PMID:26409166

  18. Terpene synthases are widely distributed in bacteria

    PubMed Central

    Yamada, Yuuki; Kuzuyama, Tomohisa; Komatsu, Mamoru; Shin-ya, Kazuo; Omura, Satoshi; Cane, David E.; Ikeda, Haruo

    2015-01-01

    Odoriferous terpene metabolites of bacterial origin have been known for many years. In genome-sequenced Streptomycetaceae microorganisms, the vast majority produces the degraded sesquiterpene alcohol geosmin. Two minor groups of bacteria do not produce geosmin, with one of these groups instead producing other sesquiterpene alcohols, whereas members of the remaining group do not produce any detectable terpenoid metabolites. Because bacterial terpene synthases typically show no significant overall sequence similarity to any other known fungal or plant terpene synthases and usually exhibit relatively low levels of mutual sequence similarity with other bacterial synthases, simple correlation of protein sequence data with the structure of the cyclized terpene product has been precluded. We have previously described a powerful search method based on the use of hidden Markov models (HMMs) and protein families database (Pfam) search that has allowed the discovery of monoterpene synthases of bacterial origin. Using an enhanced set of HMM parameters generated using a training set of 140 previously identified bacterial terpene synthase sequences, a Pfam search of 8,759,463 predicted bacterial proteins from public databases and in-house draft genome data has now revealed 262 presumptive terpene synthases. The biochemical function of a considerable number of these presumptive terpene synthase genes could be determined by expression in a specially engineered heterologous Streptomyces host and spectroscopic identification of the resulting terpene products. In addition to a wide variety of terpenes that had been previously reported from fungal or plant sources, we have isolated and determined the complete structures of 13 previously unidentified cyclic sesquiterpenes and diterpenes. PMID:25535391

  19. The distribution and abundance of archaeal tetraether lipids in U.S. Great Basin hot springs

    PubMed Central

    Paraiso, Julienne J.; Williams, Amanda J.; Huang, Qiuyuan; Wei, Yuli; Dijkstra, Paul; Hungate, Bruce A.; Dong, Hailiang; Hedlund, Brian P.; Zhang, Chuanlun L.

    2013-01-01

    Isoprenoidal glycerol dialkyl glycerol tetraethers (iGDGTs) are core membrane lipids of many archaea that enhance the integrity of cytoplasmic membranes in extreme environments. We examined the iGDGT profiles and corresponding aqueous geochemistry in 40 hot spring sediment and microbial mat samples from the U.S. Great Basin with temperatures ranging from 31 to 95°C and pH ranging from 6.8 to 10.7. The absolute abundance of iGDGTs correlated negatively with pH and positively with temperature. High lipid concentrations, distinct lipid profiles, and a strong relationship between polar and core lipids in hot spring samples suggested in situ production of most iGDGTs rather than contamination from local soils. Two-way cluster analysis and non-metric multidimensional scaling (NMS) of polar iGDGTs indicated that the relative abundance of individual lipids was most strongly related to temperature (r2 = 0.546), with moderate correlations with pH (r2 = 0.359), nitrite (r2 = 0.286), oxygen (r2 = 0.259), and nitrate (r2 = 0.215). Relative abundance profiles of individual polar iGDGTs indicated potential temperature optima for iGDGT-0 (≤70°C), iGDGT-3 (≥55°C), and iGDGT-4 (≥60°C). These relationships likely reflect both physiological adaptations and community-level population shifts in response to temperature differences, such as a shift from cooler samples with more abundant methanogens to higher-temperature samples with more abundant Crenarchaeota. Crenarchaeol was widely distributed across the temperature gradient, which is consistent with other reports of abundant crenarchaeol in Great Basin hot springs and suggests a wide distribution for thermophilic ammonia-oxidizing archaea (AOA). PMID:24009605

  20. The distribution and abundance of archaeal tetraether lipids in U.S. Great Basin hot springs.

    PubMed

    Paraiso, Julienne J; Williams, Amanda J; Huang, Qiuyuan; Wei, Yuli; Dijkstra, Paul; Hungate, Bruce A; Dong, Hailiang; Hedlund, Brian P; Zhang, Chuanlun L

    2013-01-01

    Isoprenoidal glycerol dialkyl glycerol tetraethers (iGDGTs) are core membrane lipids of many archaea that enhance the integrity of cytoplasmic membranes in extreme environments. We examined the iGDGT profiles and corresponding aqueous geochemistry in 40 hot spring sediment and microbial mat samples from the U.S. Great Basin with temperatures ranging from 31 to 95°C and pH ranging from 6.8 to 10.7. The absolute abundance of iGDGTs correlated negatively with pH and positively with temperature. High lipid concentrations, distinct lipid profiles, and a strong relationship between polar and core lipids in hot spring samples suggested in situ production of most iGDGTs rather than contamination from local soils. Two-way cluster analysis and non-metric multidimensional scaling (NMS) of polar iGDGTs indicated that the relative abundance of individual lipids was most strongly related to temperature (r (2) = 0.546), with moderate correlations with pH (r (2) = 0.359), nitrite (r (2) = 0.286), oxygen (r (2) = 0.259), and nitrate (r (2) = 0.215). Relative abundance profiles of individual polar iGDGTs indicated potential temperature optima for iGDGT-0 (≤70°C), iGDGT-3 (≥55°C), and iGDGT-4 (≥60°C). These relationships likely reflect both physiological adaptations and community-level population shifts in response to temperature differences, such as a shift from cooler samples with more abundant methanogens to higher-temperature samples with more abundant Crenarchaeota. Crenarchaeol was widely distributed across the temperature gradient, which is consistent with other reports of abundant crenarchaeol in Great Basin hot springs and suggests a wide distribution for thermophilic ammonia-oxidizing archaea (AOA). PMID:24009605

  1. Analyzing fractal property of species abundance distribution and diversity indexes.

    PubMed

    Su, Qiang

    2016-03-01

    Community diversity is usually characterized by numerical indexes; however it indeed depends on the species abundance distribution (SAD). Diversity indexes and SAD are based on the same information but treating as separate themes. Ranking species abundance from largest to smallest, the decreasing pattern can give the information about the SAD. Frontier proposed such SAD might be a fractal structure, and first applied the Zipf-Mandelbrot model to the SAD study. However, this model fails to include the Zipf model, and also fails to ensure an integer rank. In this study, a fractal model of SAD was reconstructed, and tested with 104 community samples from 8 taxonomic groups. The results show that there was a good fit of the presented model. Fractal parameter (p) determines the SAD of a community. The ecological significance of p relates to the "dominance" of a community. The correlation between p and classical diversity indexes show that Shannon index decreases and Simpson index increases as p increases. The main purpose of this paper is not to compare with other SADs models; it simply provides a new interpretation of SAD model construction, and preliminarily integrates diversity indexes and SAD model into a broader perspective of community diversity. PMID:26746388

  2. The Distribution, Excitation, and Abundance of CH+ in Orion KL

    NASA Astrophysics Data System (ADS)

    Gupta, Harshal; Morris, Patrick W.; Nagy, Zsofia; Pearson, John

    2014-06-01

    The CH+ ion was one of the first molecules identified in the interstellar gas more than 75 years ago, but its formation is still poorly understood. The high observed abundances of CH+ are puzzling, because the main reaction proposed for the formation of CH+, viz., C+ + H2 → CH+ + H, is so endothermic (4640 K), that it is unlikely to proceed at the typical temperatures of molecular clouds. One way in which the high endothermicity may be overcome, is if a significant fraction of the H2 is vibrationally excited, as is the case in dense molecular gas exposed to intense far-ultraviolet radiation fields. Elucidating the formation of CH+ in molecular clouds requires characterization of its spatial distribution, as well as that of the key reactants in the chemical pathways yielding CH+. Here we present high-resolution spectral maps of the two lowest rotational transitions of CH+ and the fine structure transition of C+ in a ~3‧×3‧ region around the Orion Kleinmann-Low (KL) nebula, obtained with the Herschel Space Observatory's Heterodyne Instrument for the Far-Infrared (HIFI). We compare these maps to those of CH+ and C+ in the Orion Bar photodissociation region (PDR), and discuss the excitation and abundance of CH+ toward Orion KL in the context of chemical and radiative transfer models, which have recently been successfully applied to the Orion Bar PDR.

  3. Distribution and abundance of saltcedar and Russian olive in the western United States

    USGS Publications Warehouse

    Nagler, Pamela L.; Glenn, Edward P.; Jarnevich, Catherine S.; Shafroth, Patrick B.

    2011-01-01

    Over the past century, two introduced Eurasian trees, saltcedar (Tamarix spp.) and Russian olive (Elaeagnus angustifolia) have become wide spread on western United States of American (U.S.) rivers. This paper reviews the literature on the following five key areas related to their distribution and abundance in the western United States: (1) the history of introduction, planting, and spread of saltcedar and Russian olive; (2) their current distribution; (3) their current abundance; (4) factors controlling their current distribution and abundance; and (5) models that have been developed to predict their future distribution and abundance. Saltcedar and Russian olive are now the third and fourth most frequently occurring woody riparian plants and the second and fifth most abundant species (out of 42 native and non-native species) along rivers in the western United States. Currently there is not a precise estimate of the areas that these species occupy in the entire West. Climatic variables are important determinants of their distribution and abundance. For example, saltcedar is limited by its sensitivity to hard freezes, whereas Russian olive appears to have a chilling requirement for bud break and seed germination, and can presumably survive colder winter temperatures. Either species can be dominant, co-dominant or sub-dominant relative to native species on a given river system. A number of environmental factors such as water availability, soil salinity, degree of stream flow regulation, and fire frequency can influence the abundance of these species relative to native species. Numerous studies suggest that both species have spread on western rivers primarily through a replacement process, whereby stress-tolerant species have moved into expanded niches that are no longer suitable for mesic native pioneer species. Better maps of current distribution and rigorous monitoring of distributional changes though time can help to resolve differences in predictions of potential

  4. The Distribution, Excitation, and Abundance of CH^+ in Orion KL

    NASA Astrophysics Data System (ADS)

    Gupta, Harshal; Morris, Patrick; Nagy, Zsofia; Pearson, John

    2014-06-01

    The CH^+ ion was one of the first molecules identified in the interstellar gas more than 75 years ago, but the high observed abundances of CH^+ remain a puzzle, because the main reaction proposed for the formation of CH^+, viz., C+ + H2 → CH+ + H, is so endothermic (4640 K), that it is unlikely to proceed at the typical temperatures of molecular clouds. One way in which the high endothermicity may be overcome, is if a significant fraction of the H_2 is vibrationally excited, as is the case in dense molecular gas exposed to intense far-ultraviolet radiation fields. Elucidating the formation of CH^+ in molecular clouds requires characterization of its spatial distribution, as well as that of the key reactants in the chemical pathways yielding CH^+. Here we present high-resolution spectral maps of the two lowest rotational transitions of CH^+ and the fine structure transition of C^+ in a ˜ 3' × 3' region around the Orion Kleinmann-Low (KL) nebula, obtained with the Herschel Space Observatory's Heterodyne Instrument for the Far-Infrared (HIFI). We compare these maps to those of CH^+ and C^+ in the Orion Bar photodissociation region (PDR), and discuss the excitation and abundance of CH^+ toward Orion KL in the context of chemical and radiative transfer models, which have recently been successfully applied to the Orion Bar PDR. These observations were done as part of the Herschel observations of EXtraordinary sources: the Orion and Sagittarius star-forming regions (HEXOS) Key Programme, led by E. A. Bergin at the University of Michigan, Ann Arbor, MI. Nagy, Z. et al. 2013, A&A 550, A96

  5. Unveiling the species-rank abundance distribution by generalizing the Good-Turing sample coverage theory.

    PubMed

    Chao, Anne; Hsieh, T C; Chazdon, Robin L; Colwell, Robert K; Gotelli, Nicholas J

    2015-05-01

    Based on a sample of individuals, we focus on inferring the vector of species relative abundance of an entire assemblage and propose a novel estimator of the complete species-rank abundance distribution (RAD). Nearly all previous estimators of the RAD use the conventional "plug-in" estimator Pi (sample relative abundance) of the true relative abundance pi of species i. Because most biodiversity samples are incomplete, the plug-in estimators are applied only to the subset of species that are detected in the sample. Using the concept of sample coverage and its generalization, we propose a new statistical framework to estimate the complete RAD by separately adjusting the sample relative abundances for the set of species detected in the sample and estimating the relative abundances for the set of species undetected in the sample but inferred to be present in the assemblage. We first show that P, is a positively biased estimator of pi for species detected in the sample, and that the degree of bias increases with increasing relative rarity of each species. We next derive a method to adjust the sample relative abundance to reduce the positive bias inherent in j. The adjustment method provides a nonparametric resolution to the longstanding challenge of characterizing the relationship between the true relative abundance in the entire assemblage and the observed relative abundance in a sample. Finally, we propose a method to estimate the true relative abundances of the undetected species based on a lower bound of the number of undetected species. We then combine the adjusted RAD for the detected species and the estimated RAD for the undetected species to obtain the complete RAD estimator. Simulation results show that the proposed RAD curve can unveil the true RAD and is more accurate than the empirical RAD. We also extend our method to incidence data. Our formulas and estimators are illustrated using empirical data sets from surveys of forest spiders (for abundance data) and

  6. Detailed Abundances of Planet-hosting Wide Binaries. II. HD80606+HD80607

    NASA Astrophysics Data System (ADS)

    Mack, Claude E., III; Stassun, Keivan G.; Schuler, Simon C.; Hebb, Leslie; Pepper, Joshua A.

    2016-02-01

    We present a detailed chemical abundance analysis of 15 elements in the planet-hosting wide binary (PHWB) system HD 80606+HD 80607 using Keck/HIRES spectra. As in our previous analysis of the PHWB HD 20782+HD 20781, we presume that these two G5 dwarf stars formed together and therefore had identical primordial abundances. In this binary, HD 80606 hosts an eccentric (e≈ 0.93) giant planet at ∼0.5 AU, but HD 80607 has no detected planets. If close-in giant planets on eccentric orbits are efficient at scattering rocky planetary material into their host stars, then HD 80606 should show evidence of having accreted rocky material while HD 80607 should not. Here we show that the trends of abundance versus element condensation temperature for HD 80606 and HD 80607 are statistically indistinguishable, corroborating the recent result of Saffe et al. This could suggest that both stars accreted similar amounts of rocky material; indeed, our model for the chemical signature of rocky planet accretion indicates that HD 80606 could have accreted up to 2.5 {M}\\oplus of rocky material—about half that contained in the Solar System and primordial asteroid belt—relative to HD 80607 and still be consistent with the data. Since HD 80607 has no known giant planets that might have pushed rocky planet material via migration onto that star, we consider it more likely that HD 80606/07 experienced essentially no rocky planet accretion. This in turn suggests that the migration history of the HD 80606 giant planet must have been such that it ejected any close-in planetary material that might have otherwise been shepherded onto the star.

  7. Constraining Planet Formation Theories with the Detailed Chemical Abundances of Planet-Hosting Wide Binary Stars

    NASA Astrophysics Data System (ADS)

    Mack, Claude Ernest; Schuler, Simon; Stassun, Keivan

    2015-12-01

    We present a detailed chemical abundance analysis of planet-hosting wide binary systems. Each of these binary systems consists of two stars with similar spectral types (ranging from G2V - K2V), and in each system, at least one star hosts a giant planet with an orbital pericenter ~< 0.5 AU. We examine the photospheric abundances of the host stars to determine if they have ingested rocky planetary material as a result of the close-in giant planets scattering inner rocky planets into the star as they migrated to their present-day locations. Using high-resolution, high signal-to-noise echelle spectra, for both stars in each system we derive the chemical abundances ([X/H]) of 15 elements covering a range of condensation temperatures (Tc). For stars in our sample with approximately solar metallicity, the refractory elements (Tc > 900 K) show a positive correlation between [X/H] and Tc. However, for stars with super-solar metallicities, the refractory elements show a slightly negative correlation between [X/H] and Tc. We interpret these results in the context of numerical simulations of giant planet migration that predict the accretion of hydrogen-depleted rocky material by the host star. We demonstrate that a simple model for a solar-metallicity star accreting material with Earth-like composition predicts a positive correlation between [X/H] and Tc, while for a supersolar-metallicity star the model predicts a negative correlation. The stark contrast between the predicted correlations for solar-metallicity and supersolar-metallicity stars may indicate that extracting any chemical signature of rocky planetary accretion is particularly challenging for very metal-rich stars.

  8. Habitat Characteristics Predicting Distribution and Abundance Patterns of Scallops in D’Entrecasteaux Channel, Tasmania

    PubMed Central

    Mendo, Tania; Lyle, Jeremy M.; Moltschaniwskyj, Natalie A.; Tracey, Sean R.; Semmens, Jayson M.

    2014-01-01

    Habitat characteristics greatly influence the patterns of distribution and abundance in scallops, providing structure for the settlement of spat and influencing predation risk and rates of survival. Establishing scallop-habitat relationships is relevant to understanding the ecological processes that regulate scallop populations and to managing critical habitats. This information is particularly relevant for the D’Entrecasteaux Channel, south-eastern Tasmania (147.335 W, 43.220 S), a region that has supported significant but highly variable scallop production over many years, including protracted periods of stock collapse. Three species of scallops are present in the region; the commercial scallop Pecten fumatus, the queen scallop Equichlamys bifrons, and the doughboy scallop Mimachlamys asperrima. We used dive surveys and Generalized Additive Modelling to examine the relationship between the distribution and abundance patterns of each species and associated habitat characteristics. The aggregated distribution of each species could be predicted as a function of sediment type and species-specific habitat structural components. While P. fumatus was strongly associated with finer sediments and E. bifrons with coarse grain sediments, M. asperrima had a less selective association, possibly related to its ability to attach on a wide range of substrates. Other habitat characteristics explaining P. fumatus abundance were depth, Asterias amurensis abundance, shell and macroalgae cover. Equichlamys bifrons was strongly associated with macroalgae and seagrass cover, whereas M. asperrima abundance was greatly explained by sponge cover. The models define a set of relationships from which plausible hypotheses can be developed. We propose that these relationships are mediated by predation pressure as well as the specific behavioural characteristics of each species. The findings also highlight the specific habitat characteristics that are relevant for spatial management and

  9. Habitat characteristics predicting distribution and abundance patterns of scallops in D'Entrecasteaux Channel, Tasmania.

    PubMed

    Mendo, Tania; Lyle, Jeremy M; Moltschaniwskyj, Natalie A; Tracey, Sean R; Semmens, Jayson M

    2014-01-01

    Habitat characteristics greatly influence the patterns of distribution and abundance in scallops, providing structure for the settlement of spat and influencing predation risk and rates of survival. Establishing scallop-habitat relationships is relevant to understanding the ecological processes that regulate scallop populations and to managing critical habitats. This information is particularly relevant for the D'Entrecasteaux Channel, south-eastern Tasmania (147.335 W, 43.220 S), a region that has supported significant but highly variable scallop production over many years, including protracted periods of stock collapse. Three species of scallops are present in the region; the commercial scallop Pecten fumatus, the queen scallop Equichlamys bifrons, and the doughboy scallop Mimachlamys asperrima. We used dive surveys and Generalized Additive Modelling to examine the relationship between the distribution and abundance patterns of each species and associated habitat characteristics. The aggregated distribution of each species could be predicted as a function of sediment type and species-specific habitat structural components. While P. fumatus was strongly associated with finer sediments and E. bifrons with coarse grain sediments, M. asperrima had a less selective association, possibly related to its ability to attach on a wide range of substrates. Other habitat characteristics explaining P. fumatus abundance were depth, Asterias amurensis abundance, shell and macroalgae cover. Equichlamys bifrons was strongly associated with macroalgae and seagrass cover, whereas M. asperrima abundance was greatly explained by sponge cover. The models define a set of relationships from which plausible hypotheses can be developed. We propose that these relationships are mediated by predation pressure as well as the specific behavioural characteristics of each species. The findings also highlight the specific habitat characteristics that are relevant for spatial management and habitat

  10. Liana Abundance, Diversity, and Distribution on Barro Colorado Island, Panama

    PubMed Central

    Schnitzer, Stefan A.; Mangan, Scott A.; Dalling, James W.; Baldeck, Claire A.; Hubbell, Stephen P.; Ledo, Alicia; Muller-Landau, Helene; Tobin, Michael F.; Aguilar, Salomon; Brassfield, David; Hernandez, Andres; Lao, Suzanne; Perez, Rolando; Valdes, Oldemar; Yorke, Suzanne Rutishauser

    2012-01-01

    Lianas are a key component of tropical forests; however, most surveys are too small to accurately quantify liana community composition, diversity, abundance, and spatial distribution – critical components for measuring the contribution of lianas to forest processes. In 2007, we tagged, mapped, measured the diameter, and identified all lianas ≥1 cm rooted in a 50-ha plot on Barro Colorado Island, Panama (BCI). We calculated liana density, basal area, and species richness for both independently rooted lianas and all rooted liana stems (genets plus clones). We compared spatial aggregation patterns of liana and tree species, and among liana species that varied in the amount of clonal reproduction. We also tested whether liana and tree densities have increased on BCI compared to surveys conducted 30-years earlier. This study represents the most comprehensive spatially contiguous sampling of lianas ever conducted and, over the 50 ha area, we found 67,447 rooted liana stems comprising 162 species. Rooted lianas composed nearly 25% of the woody stems (trees and lianas), 35% of woody species richness, and 3% of woody basal area. Lianas were spatially aggregated within the 50-ha plot and the liana species with the highest proportion of clonal stems more spatially aggregated than the least clonal species, possibly indicating clonal stem recruitment following canopy disturbance. Over the past 30 years, liana density increased by 75% for stems ≥1 cm diameter and nearly 140% for stems ≥5 cm diameter, while tree density on BCI decreased 11.5%; a finding consistent with other neotropical forests. Our data confirm that lianas contribute substantially to tropical forest stem density and diversity, they have highly clumped distributions that appear to be driven by clonal stem recruitment into treefall gaps, and they are increasing relative to trees, thus indicating that lianas will play a greater role in the future dynamics of BCI and other neotropical forests. PMID:23284889

  11. Abundance and distribution of immature mosquitoes in urban rivers proximate to their larval habitats.

    PubMed

    Ma, Minghai; Huang, Minsheng; Leng, Peien

    2016-11-01

    Whether ecological restoration of polluted urban rivers would provide suitable breeding habitats for some mosquitoes was not clear yet. It was therefore important to determine how altered river conditions influence mosquito ecology. Monthly data on water quality and larval density were obtained to determine the effects of river systems on the distribution and abundance of immature mosquitoes in two coastal cities in Eastern China. In total, 5 species within two genera of mosquitoes were collected and identified in habitat with vegetation from three positive rivers. Culex pipiens pallens was the most abundant and widely distributed species. A new species (Culex fuscanus) was reported in certain districts. Physico-chemical parameters of river water were important, but not the only, set of influences on immature mosquito breeding. Aquatic vegetation could increase the likelihood of mosquito breeding while artificial aeration might prevent the approach of mosquitoes. Slow-moving water might be a new potential marginal habitat type for some Culex and Aedes albopictus. Variation of river system with ecological restoration might influence the abundance and distribution of immature mosquitoes. PMID:27515809

  12. The abundance and distribution of water vapor in Jupiter's atmosphere

    NASA Technical Reports Server (NTRS)

    Bjoraker, Gordon L.; Larson, Harold P.; Kunde, Virgil G.

    1986-01-01

    The atmospheric transmission window between 1800 and 2250 cm(-1) in Jupiter's atmosphere was observed from the Kuiper Airborne Observatory (KAO) and by the infrared spectrometer (IRIS) on Voyager. The vertical distribution of H2O was derived for the 1 to 6 bar portion of Jupiter's troposphere. The spatial variation of H2O was measured using IRIS spectra of the Hot Spots in the North and South Equatorial Belts, the Equatorial Zone, and for an average of the North and South Tropical Zones. The H2O column abundance above the 4 bar level is the same in the zones as in the SEB Hot Spots, about 20 cm-amagat. The NEB Hot Spots are desiccated by a factor of 3 with respect to the rest of Jupiter. For an average between -40 to 40 deg latitude, the H2O mole fraction, qH2O, is saturated for P less than 2 bars, qH2O = 4x10 to the -6 in the 2 to 4 bar range and it increases to 3x10 to the -5 at 6 bars. A similar vertical profile applies to the spatially resolved zone and belt spectra, except that H2O falls off more rapidly at P less than 4 bars in the NEB Hot Spots. The massive H2O cloud at 5 bars, T = 273 K, proposed in solar composition models, is inconsistent with the observations. Instead, a thin H2O ice cloud would form at 2 bars, T = 200 K. The O/H ratio in Jupiter, inferred from H2O measurements in both belts and zones at 6 bars, is depleted by a factor of 50 with respect to the Sun. The implications for the origin of Jupiter of globally depleted O/H, but enhanced C/H and N/H, are discussed.

  13. Distribution and abundance of sacred monkeys in Igboland, southern Nigeria.

    PubMed

    Baker, Lynne R; Tanimola, Adebowale A; Olubode, Oluseun S; Garshelis, David L

    2009-07-01

    Although primates are hunted on a global scale, some species are protected against harassment and killing by taboos or religious doctrines. Sites where the killing of sacred monkeys or the destruction of sacred groves is forbidden may be integral to the conservation of certain species. In 2004, as part of a distribution survey of Sclater's guenon (Cercopithecus sclateri) in southern Nigeria, we investigated reports of sacred monkeys in the Igbo-speaking region of Nigeria. We confirmed nine new sites where primates are protected as sacred: four with tantalus monkeys (Chlorocebus tantalus) and five with mona monkeys (Cercopithecus mona). During 2004-2006, we visited two communities (Akpugoeze and Lagwa) previously known to harbor sacred populations of Ce. sclateri to estimate population abundance and trends. We directly counted all groups and compared our estimates with previous counts when available. We also estimated the size of sacred groves and compared these with grove sizes reported in the literature. The mean size of the sacred groves in Akpugoeze (2.06 ha, n = 10) was similar to others in Africa south of the Sahel, but larger than the average grove in Lagwa (0.49 ha, n = 15). We estimated a total population of 124 Sclater's monkeys in 15 groups in Lagwa and 193 monkeys in 20 groups in Akpugoeze. The Akpugoeze population was relatively stable over two decades, although the proportion of infants declined, and the number of groups increased. As Sclater's monkey does not occur in any official protected areas, sacred populations are important to the species' long-term conservation. Despite the monkeys' destruction of human crops, most local people still adhere to the custom of not killing monkeys. These sites represent ideal locations in which to study the ecology of Sclater's monkey and human-wildlife interactions. PMID:19408287

  14. Distribution and abundance of marine bird and pinniped populations within Port Foster, Deception Island, Antarctica

    NASA Astrophysics Data System (ADS)

    Kendall, Katrina A.; Ruhl, Henry A.; Wilson, Robert C.

    2003-06-01

    Seabirds and pinnipeds were surveyed during four cruises from March 1999 to November 2000 at Port Foster, Deception Island, Antarctica. Abundances and distributions of three species of pinnipeds, Arctocephalus gazella (Antarctic fur seals), Leptonychotes weddelli (Weddell seals), and Lobodon carcinophagus (crabeater seals), and 11 species of marine birds were documented within Port Foster. A. gazella was the dominant pinniped within Port Foster; its abundance has increased since the 1986/87 austral summer season. A. gazella were concentrated at the entrance to Port Foster. More pinnipeds were observed during the austral summer than during the spring. The most dominant seabird, Pygoscelis antarctica (chinstrap penguin), was concentrated along the rocky cliffs behind the beaches where A. gazella hauled out. Larus dominicanus (kelp gull) and Daption capense (cape petrel) were the most dominant flying seabirds. All other seabird species were more widely distributed around Port Foster than P. antarctica. There was no clear trend in abundances of seabirds over the study period. It is possible that the protected area of Port Foster provides refuge for vagrants of colonies along the outer periphery of the island and as a stopover point for migrating species.

  15. Abundances and Distributions of the Dominant nifH Phylotypes in the Northern Atlantic Ocean▿ †

    PubMed Central

    Langlois, Rebecca J.; Hümmer, Diana; LaRoche, Julie

    2008-01-01

    Understanding the factors that influence the distribution and abundance of marine diazotrophs is important in order to assess their role in the oceanic nitrogen cycle. Environmental DNA samples from four cruises to the North Atlantic Ocean, covering a sampling area of 0°N to 42°N and 67°W to 13°W, were analyzed for the presence and amount of seven nifH phylotypes using real-time quantitative PCR and TaqMan probes. The cyanobacterial phylotypes dominated in abundance (94% of all nifH copies detected) and were the most widely distributed. The filamentous cyanobacterial type, which included both Trichodesmium and Katagnymene, was the most abundant (51%), followed by group A, an uncultured unicellular cyanobacterium (33%), and gamma A, an uncultured gammaproteobacterium (6%). Group B, unicellular cyanobacterium Crocosphaera, and group C Cyanothece-like phylotypes were not often detected (6.9% and 2.3%, respectively), but where present, could reach high concentrations. Gamma P, another uncultured gammaproteobacterium, was seldom detected (0.5%). Water temperature appeared to influence the distribution of many nifH phylotypes. Very high (up to 1 × 106 copies liter−1) nifH concentrations of group A were detected in the eastern basin (25 to 17°N, 27 to 30°W), where the temperature ranged from 20 to 23°C. The highest concentrations of filamentous phylotypes were measured between 25 and 30°C. The uncultured cluster III phylotype was uncommon (0.4%) and was associated with mean water temperatures of 18°C. Diazotroph abundance was highest in regions where modeled average dust deposition was between 1 and 2 g/m2/year. PMID:18245263

  16. Insights into the distribution and abundance of the ubiquitous candidatus Saccharibacteria phylum following tag pyrosequencing.

    PubMed

    Ferrari, Belinda; Winsley, Tristrom; Ji, Mukan; Neilan, Brett

    2014-01-01

    The phylum candidatus Saccharibacteria formerly known as Candidate Division TM7 is a highly ubiquitous phylum with 16S rRNA gene sequences reported in soils, sediments, wastewater and animals, as well as a host of clinical environments. Here, the application of two taxon-specific primers on environmental and human-associated samples using bar-coded tag pyrosequencing revealed two new clades for this phylum to exist and we propose that the division consists of 2 monophyletic and 2 polyphyletic clades. Investigation into TM7 ecology revealed that a high proportion (58%) of phylotypes were sample specific, few were widely distributed and of those most widely distributed all belonged to subdivision 3. Additionally, 50% of the most relatively abundant phylotypes observed were also subdivision 3 members. Community analysis showed that despite the presence of a high proportion of unique phylotypes, specific groups of samples still harbor similar TM7 communities with samples clustering together. The lack of relatively abundant phylotypes from subdivisions 1, 2 and 4 and the presence of very few cosmopolitan members' highlights not only the site specific nature of this phylum but provides insight into why the majority of studies into TM7 have been biased towards subdivision 3. PMID:24492458

  17. An abundance of small exoplanets around stars with a wide range of metallicities.

    PubMed

    Buchhave, Lars A; Latham, David W; Johansen, Anders; Bizzarro, Martin; Torres, Guillermo; Rowe, Jason F; Batalha, Natalie M; Borucki, William J; Brugamyer, Erik; Caldwell, Caroline; Bryson, Stephen T; Ciardi, David R; Cochran, William D; Endl, Michael; Esquerdo, Gilbert A; Ford, Eric B; Geary, John C; Gilliland, Ronald L; Hansen, Terese; Isaacson, Howard; Laird, John B; Lucas, Philip W; Marcy, Geoffrey W; Morse, Jon A; Robertson, Paul; Shporer, Avi; Stefanik, Robert P; Still, Martin; Quinn, Samuel N

    2012-06-21

    The abundance of heavy elements (metallicity) in the photospheres of stars similar to the Sun provides a 'fossil' record of the chemical composition of the initial protoplanetary disk. Metal-rich stars are much more likely to harbour gas giant planets, supporting the model that planets form by accumulation of dust and ice particles. Recent ground-based surveys suggest that this correlation is weakened for Neptunian-sized planets. However, how the relationship between size and metallicity extends into the regime of terrestrial-sized exoplanets is unknown. Here we report spectroscopic metallicities of the host stars of 226 small exoplanet candidates discovered by NASA's Kepler mission, including objects that are comparable in size to the terrestrial planets in the Solar System. We find that planets with radii less than four Earth radii form around host stars with a wide range of metallicities (but on average a metallicity close to that of the Sun), whereas large planets preferentially form around stars with higher metallicities. This observation suggests that terrestrial planets may be widespread in the disk of the Galaxy, with no special requirement of enhanced metallicity for their formation. PMID:22722196

  18. Abundance and distribution of water vapor in Jupiter's atmosphere

    SciTech Connect

    Bjoraker, G.L.; Larson, H.P.; Kunde, V.G.

    1986-09-01

    The atmospheric transmission window between 1800 and 2250 cm(-1) in Jupiter's atmosphere was observed from the Kuiper Airborne Observatory (KAO) and by the infrared spectrometer (IRIS) on Voyager. The vertical distribution of H/sub 2/O was derived for the 1 to 6 bar portion of Jupiter's troposphere. The spatial variation of H/sub 2/O was measured using IRIS spectra of the Hot Spots in the North and South Equatorial Belts, the Equatorial Zone, and for an average of the North and South Tropical Zones. The H/sub 2/O column abundance above the 4 bar level is the same in the zones as in the SEB Hot Spots, about 20 cm-amagat. The NEB Hot Spots are desiccated by a factor of 3 with respect to the rest of Jupiter. For an average between -40 to 40 deg latitude, the H/sub 2/O mole fraction, qH/sub 2/O, is saturated for P less than 2 bars, qH/sub 2/O = 4x10 to the -6 in the 2 to 4 bar range and it increases to 3x10 to the -5 at 6 bars. A similar vertical profile applies to the spatially resolved zone and belt spectra, except that H/sub 2/O falls off more rapidly at P less than 4 bars in the NEB Hot Spots. The massive H/sub 2/O cloud at 5 bars, T = 273 K, proposed in solar composition models, is inconsistent with the observations. Instead, a thin H/sub 2/O ice cloud would form at 2 bars, T = 200 K. The O/H ratio in Jupiter, inferred from H/sub 2/O measurements in both belts and zones at 6 bars, is depleted by a factor of 50 with respect to the Sun. The implications for the origin of Jupiter of globally depleted O/H, but enhanced C/H and N/H, are discussed.

  19. Distribution and abundance of predators that affect duck production--prairie pothole region

    USGS Publications Warehouse

    Sargeant, A.B.; Greenwood, R.J.; Sovada, M.A.; Shaffer, T.L.

    1993-01-01

    During 1983-88, the relative abundance of 18 species and species-groups of mammalian and avian predators affecting duck production in the prairie pothole region was determined in 33 widely scattered study areas ranging in size from 23-26 km2. Accounts of each studied species and species-group include habitat and history, population structure and reported densities, and information on distribution and abundance from the present study. Index values of undetected, scarce, uncommon, common, or numerous were used to rate abundance of nearly all species in each study area. Principal survey methods were livetrapping of striped skunks (Mephitis mephitis) and Franklin's ground squirrels (Spermophilus franklinii), systematic searches for carnivore tracks in quarter sections (0.65 km2), daily records of sightings of individual predator species, and systematic searches for occupied nests of tree-nesting avian predators. Abundances of predators in individual areas were studied 1-3 years.The distribution and abundance of predator species throughout the prairie pothole region have undergone continual change since settlement of the region by Europeans in the late 1800's. Predator populations in areas we studied differed markedly from those of pristine times. The changes occurred from habitat alterations, human-inflicted mortality of predators, and interspecific relations among predator species. Indices from surveys of tracks revealed a decline in the abundance of red foxes (Vulpes vulpes) and an albeit less consistent decline in the abundance of raccoons (Procyon lotor) with an increase in the abundance of coyotes (Canis latrans). Records of locations of occupied nests revealed great horned owls (Bubo virginianus) and red-tailed hawks (Buteo jamaicensis) tended to nest 0.5 km apart, and American crows (Corvus brachyrhynchos) tended to avoid nesting 0.5 km of nests of red-tailed hawks. Excluding large gulls, for which no measurements of abundance were obtained, the number of

  20. Macrobenthos composition, distribution and abundance within Sungai Pulai estuary, Johor, Malaysia

    NASA Astrophysics Data System (ADS)

    Shi, Guan Wan; Min, Lee Di; Ghaffar, Mazlan Abd; Ali, Masni Md; Cob, Zaidi Che

    2014-09-01

    Macrobenthos are very useful organisms for monitoring marine environmental and widely use in marine ecology research. They are able to monitor the difference phase in the recovery stage of disturbed sites by appear different species macrobenthos after the cessation of the impact. Univariate and multivariate methods were use to study the macrobenthos community within Sungai Pulai estuary, Johor, Malaysia. Five sub-samples were taken at each sampling sites by using 10 cm diameter corer. Crustaceans were the most abundant at Tanjung Adang (St. 1) and the station of non-seagrass area (St. 2) while polychaetes were the most abundant at Merambong Shoal (St. 3). Higher density of macrobenthos was found at St.3 followed by St. 1 and St. 2. The commonly used population indices such as diversity, richness, evenness and dominance were employed to determine the differences in diversity and abundance of macrobenthos. The diversity, richness and evenness index values showed slight increment from Station 1 to Station 3, while the dominance index decreasing trend from Station 1 to Station 3. A total 21 polychaete families were collected in Sungai Pulai estuary, which was dominated by the Spionidae, Capitellidae and Glyceridae. Cluster (Bray-Curtis similarities) analyses revealed that the Tanjung Adang and Merambong Shoal population were clearly separated from the station non-seagrass. For the time being factors that influence the pattern of distribution of the macrobenthos cannot be determined and subjected to further studies.

  1. Distribution and abundance of nonnative fishes in streams of the western United States

    USGS Publications Warehouse

    Schade, C.B.; Bonar, Scott A.

    2005-01-01

    This report presents data from one of the largest standardized stream surveys conducted in he western United States, which shows that one of every four individual fish in streams of 12 western states are nonnative. The states surveyed included Arizona, California, Colorado, Idaho, Montana, Nevada, North Dakota, Oregon, South Dakota, Utah, Washington, and Wyoming. The most widely distributed and abundant nonnative fishes in the western USA were brook trout Salvelinus fontinalis, brown trout Salmo trutta, rainbow trout Oncorhynchus mykiss, common carp Cyprinus carpio, smallmouth bass Micropterus dolomieu, largemouth bass M. salmoides, green sunfish Lepomis cyanellus, fathead minnow Pimephales promelas, yellow perch Percaflavescens, yellow bullhead Ameiurus natalis, cutthroat trout O. clarkii, western mosquitofish Gambusia affinis, golden shiner Notemigonus crysoleucas, channel catfish Ictalurus punctatus, and red shiner Cyprinella lutrensis. The greatest abundance and distribution of nonnative fishes was in interior states, and the most common nonnatives were introduced for angling. Nonnative fishes were widespread in pristine to highly disturbed streams influenced by all types of land use practices. We present ranges in water temperature, flow, stream order, riparian cover, human disturbance, and other environmental conditions where the 10 most common introduced species were found. Of the total western U.S. stream length bearing fish, 50.1% contained nonnative fishes while 17.9% contained physical environment that was ranked highly or moderately disturbed by humans. Introduced fishes can adversely affect stream communities, and they are much more widespread in western U.S. streams than habitat destruction. The widespread distribution and high relative abundance of nonnative fishes and their documented negative effects suggest their management and control should elicit at least as much attention as habitat preservation in the protection of native western U.S. stream

  2. Comparing Amino Acid Abundances and Distributions Across Carbonaceous Chondrite Groups

    NASA Technical Reports Server (NTRS)

    Burton, Aaron S.; Callahan, Michael P.; Glavin, Daniel P.; Elsila, Jamie E.; Dworkin, Jason P.

    2012-01-01

    Meteorites are grouped according to bulk properties such as chemical composition and mineralogy. These parameters can vary significantly among the different carbonaceous chondrite groups (CI, CM, CO, CR, CH, CB, CV and CK). We have determined the amino acid abundances of more than 30 primary amino acids in meteorites from each of the eight groups, revealing several interesting trends. There are noticeable differences in the structural diversity and overall abundances of amino acids between meteorites from the different chondrite groups. Because meteorites may have been an important source of amino acids to the prebiotic Earth and these organic compounds are essential for life as we know it, the observed variations of these molecules may have been important for the origins of life.

  3. Fossil Signatures Using Elemental Abundance Distributions and Bayesian Probabilistic Classification

    NASA Technical Reports Server (NTRS)

    Hoover, Richard B.; Storrie-Lombardi, Michael C.

    2004-01-01

    Elemental abundances (C6, N7, O8, Na11, Mg12, Al3, P15, S16, Cl17, K19, Ca20, Ti22, Mn25, Fe26, and Ni28) were obtained for a set of terrestrial fossils and the rock matrix surrounding them. Principal Component Analysis extracted five factors accounting for the 92.5% of the data variance, i.e. information content, of the elemental abundance data. Hierarchical Cluster Analysis provided unsupervised sample classification distinguishing fossil from matrix samples on the basis of either raw abundances or PCA input that agreed strongly with visual classification. A stochastic, non-linear Artificial Neural Network produced a Bayesian probability of correct sample classification. The results provide a quantitative probabilistic methodology for discriminating terrestrial fossils from the surrounding rock matrix using chemical information. To demonstrate the applicability of these techniques to the assessment of meteoritic samples or in situ extraterrestrial exploration, we present preliminary data on samples of the Orgueil meteorite. In both systems an elemental signature produces target classification decisions remarkably consistent with morphological classification by a human expert using only structural (visual) information. We discuss the possibility of implementing a complexity analysis metric capable of automating certain image analysis and pattern recognition abilities of the human eye using low magnification optical microscopy images and discuss the extension of this technique across multiple scales.

  4. The distribution and abundance of interstellar C2H

    NASA Technical Reports Server (NTRS)

    Huggins, P. J.; Carlson, W. J.; Kinney, A. L.

    1984-01-01

    C2H(N = 1-0) emission has been extensively observed in a variety of molecular clouds, including: 12 hot, dense, cloud cores, 3 bright-rimmed clouds (in NGC 1977, IC 1396, and IC 1848), and across the extended OMC - 1 cloud. It has also been observed in the circumstellar envelopes IRC + 10216 and AFGL 2688. Abundance analyses of the molecular clouds yield C2H/(C-13)O abundance ratios of about 0.01, with little variation (less than about a factor of 4) either between clouds or across individual clouds. In the Orion plateau source, the C2H abundance is enhanced by less than a factor of 4, relative to the extended cloud. The generally high levels of C2H found in the molecular clouds are not readily accounted for by simple, steady-state chemical models, and suggest, as do earlier observations of atomic carbon, that the carbon chemistry in dense clouds is more active than is commonly assumed.

  5. Abundance and distribution of uranium and thorium in zircon, sphene, apatite, epidote, and monazite in granitic rocks

    USGS Publications Warehouse

    Hurley, Patrick M.; Fairbairn, Harold W.

    1956-01-01

    Analyses were made of uranium and thorium in ziircon, sphene, apatite, epidote, and monazite separated as accessory minerals from samples of granitic rock from widely scattered localities to indicate the abundance and distribution of these two elements among the five mineral phases.  For any pair of mineral phases the distribution ratio remains within the same order of magnitude over the different rocks tested, although the variability of the data is such that only wide departures from constancy could be ascertained.  Such gross differences have not been found. 

  6. Determinants of distribution and abundance of two shrub species, Guiera senegalensis and Piliostigma reticulatum, in Peanut Basin, Senegal

    NASA Astrophysics Data System (ADS)

    Lufafa, A.; Diédhiou, I.; Ndiaye, N.; Kizito, F.; Dick, R.; Noller, J. S.

    2005-05-01

    The ability to predict and manage the course of landscape-level ecological change and its longer-term consequences on ecosystem functions (e.g. carbon stabilization and soil degradation mitigation) depends on the ability to understand how a particular ecosystem functions and the mechanisms that control the distribution, configuration and abundance of key species. Guiera senegalensis and Piliostigma reticulatum are two native shrub species that are widely found in Sub-Saharan Africa but unrecognized in their potential role in regulating hydrological and carbon cycles in both natural and agro-ecosystems. Our objective was to conduct a study on the determinants of landscape-level distribution and abundance of these shrub species as a basis for ecological modeling and management of this fragile semiarid environment. Formal Recursive Inference Modeling was used to adduce determinants of species presence while logistic regression and geostatistical approaches were used to estimate shrub abundance within their communities. The results showed that distribution of the shrubs is controlled by four factors: geological substrate, mean annual temperature, mean annual rainfall and landform (profile convexity). Relative abundance within the shrub communities is under the influence of mean annual rainfall, maximum annual temperature and elevation (for G. senegalensis) and mean annual rainfall, mean annual temperature, elevation and landform (profile convexity) (for P. reticulatum). Predictive models for shrub distribution and abundance were generally poor, probably highlighting the weakness of statistical models in analysis and quantification of the spatial structure of ecosystems.

  7. Using Range-Wide Abundance Modeling to Identify Key Conservation Areas for the Micro-Endemic Bolson Tortoise (Gopherus flavomarginatus).

    PubMed

    Ureña-Aranda, Cinthya A; Rojas-Soto, Octavio; Martínez-Meyer, Enrique; Yáñez-Arenas, Carlos; Landgrave Ramírez, Rosario; Espinosa de los Monteros, Alejandro

    2015-01-01

    A widespread biogeographic pattern in nature is that population abundance is not uniform across the geographic range of species: most occurrence sites have relatively low numbers, whereas a few places contain orders of magnitude more individuals. The Bolson tortoise Gopherus flavomarginatus is endemic to a small region of the Chihuahuan Desert in Mexico, where habitat deterioration threatens this species with extinction. In this study we combined field burrows counts and the approach for modeling species abundance based on calculating the distance to the niche centroid to obtain range-wide abundance estimates. For the Bolson tortoise, we found a robust, negative relationship between observed burrows abundance and distance to the niche centroid, with a predictive capacity of 71%. Based on these results we identified four priority areas for the conservation of this microendemic and threatened tortoise. We conclude that this approach may be a useful approximation for identifying key areas for sampling and conservation efforts in elusive and rare species. PMID:26115482

  8. Using Range-Wide Abundance Modeling to Identify Key Conservation Areas for the Micro-Endemic Bolson Tortoise (Gopherus flavomarginatus)

    PubMed Central

    Ureña-Aranda, Cinthya A.; Rojas-Soto, Octavio; Martínez-Meyer, Enrique; Yáñez-Arenas, Carlos; Landgrave Ramírez, Rosario; Espinosa de los Monteros, Alejandro

    2015-01-01

    A widespread biogeographic pattern in nature is that population abundance is not uniform across the geographic range of species: most occurrence sites have relatively low numbers, whereas a few places contain orders of magnitude more individuals. The Bolson tortoise Gopherus flavomarginatus is endemic to a small region of the Chihuahuan Desert in Mexico, where habitat deterioration threatens this species with extinction. In this study we combined field burrows counts and the approach for modeling species abundance based on calculating the distance to the niche centroid to obtain range-wide abundance estimates. For the Bolson tortoise, we found a robust, negative relationship between observed burrows abundance and distance to the niche centroid, with a predictive capacity of 71%. Based on these results we identified four priority areas for the conservation of this microendemic and threatened tortoise. We conclude that this approach may be a useful approximation for identifying key areas for sampling and conservation efforts in elusive and rare species. PMID:26115482

  9. Thermally widely tunable laser diodes with distributed feedback

    SciTech Connect

    Todt, R.; Jacke, T.; Meyer, R.; Amann, M.-C.

    2005-07-11

    A thermally widely tunable buried heterostructure laser diode with distributed feedback (DFB) is demonstrated. This device requires only two tuning currents for wide quasicontinuous wavelength tuning, thereby facilitating easy and fast device calibration and control. Furthermore, being based on regular DFB laser fabrication technology, it is readily manufacturable. By using window structures instead of cleaved facets plus antireflection coatings, a regular tuning behavior has been achieved for a DFB-like widely tunable laser diode with only two tuning currents. The laser diode covers the wavelength range between 1552 and 1602 nm. Requiring side-mode suppression ratio and output power above 30 dB and 10 mW, respectively, a wavelength range of 43 nm is accessible.

  10. Microsite abundance and distribution of woody seedlings in a South Carolina cypress-tupelo swamp

    SciTech Connect

    Huenneke, L.F.; Sharitz, R.R.

    1986-05-01

    At least 16 types of microsites or substrates for vascular plant seedlings can be distinguished in bald cypress-water tupelo (Taxodium distichum-Nyssa aquatica) swamps. We measured the relative abundances of these microsite types, and the distribution of woody seedlings on them, in two riverine swamp forests on the Savannah River floodplain, South Carolina. Microsite abundances in a little disturbed forest differed significantly from those in a more open stand which had experienced much recent sediment deposition from upstream erosion, as well as higher water temperatures. Woody seedlings were distributed nonrandomly among microsite types (i.e., not in proportion to the abundance of a given microsite type). There were significant differences in microsite distribution patterns among growth forms (tree spp. vs. shrubs vs. vines) and among species within growth form. Many human activities may alter substrate nature and abundance in a wetland, thus indirectly altering the abundance and species composition of seedling recruitment.

  11. Distribution and abundance of zooplankton populations in Crater Lake, Oregon

    USGS Publications Warehouse

    Larson, G.L.; McIntire, C.D.; Buktenica, M.W.; Girdner, S.F.; Truitt, R.E.

    2007-01-01

    The zooplankton assemblages in Crater Lake exhibited consistency in species richness and general taxonomic composition, but varied in density and biomass during the period between 1988 and 2000. Collectively, the assemblages included 2 cladoceran taxa and 10 rotifer taxa (excluding rare taxa). Vertical habitat partitioning of the water column to a depth of 200 m was observed for most species with similar food habits and/or feeding mechanisms. No congeneric replacement was observed. The dominant species in the assemblages were variable, switching primarily between periods of dominance of Polyarthra-Keratella cochlearis and Daphnia. The unexpected occurrence and dominance of Asplanchna in 1991 and 1992 resulted in a major change in this typical temporal shift between Polyarthra-K. cochlearis and Daphnia. Following a collapse of the zooplankton biomass in 1993 that was probably caused by predation from Asplanchna, Kellicottia dominated the zooplankton assemblage biomass between 1994 and 1997. The decline in biomass of Kellicottia by 1998 coincided with a dramatic increase in Daphnia biomass. When Daphnia biomass declined by 2000, Keratella biomass increased again. Thus, by 1998 the assemblage returned to the typical shift between Keratella-Polyarthra and Daphnia. Although these observations provided considerable insight about the interannual variability of the zooplankton assemblages in Crater Lake, little was discovered about mechanisms behind the variability. When abundant, kokanee salmon may have played an important role in the disappearance of Daphnia in 1990 and 2000 either through predation, inducing diapause, or both. ?? 2007 Springer Science+Business Media B.V.

  12. Host trait combinations drive abundance and canopy distribution of atmospheric bromeliad assemblages.

    PubMed

    Chaves, Cleber Juliano Neves; Dyonisio, Júlio César; Rossatto, Davi Rodrigo

    2016-01-01

    Epiphytes are strongly dependent on the conditions created by their host's traits and a certain degree of specificity is expected between them, even if these species are largely abundant in a series of tree hosts of a given environment, as in the case of atmospheric bromeliads. Despite their considerable abundance in these environments, we hypothesize that stochasticity alone cannot explain the presence and abundance of atmospheric bromeliads on host trees, since host traits could have a greater influence on the establishment of these bromeliads. We used secondary and reforested seasonal forests and three distinct silvicultures to test whether species richness, phylogenetic diversity and functional diversity of trees can predict the differential presence, abundance and distribution of atmospheric bromeliads on hosts. We compared the observed parameters of their assemblage with null models and performed successive variance hierarchic partitions of abundance and distribution of the assemblage to detect the influence of multiple traits of the tree hosts. Our results do not indicate direct relationships between the abundance of atmospheric bromeliads and phylogenetic or functional diversity of trees, but instead indicate that bromeliads occurred on fewer tree species than expected by chance. We distinguished functional tree patterns that can improve or reduce the abundance of atmospheric bromeliads, and change their distribution on branches and trunk. While individual tree traits are related to increased abundance, species traits are related to the canopy distribution of atmospheric bromeliad assemblages. A balance among these tree functional patterns drives the atmospheric bromeliad assemblage of the forest patches. PMID:26888951

  13. Host trait combinations drive abundance and canopy distribution of atmospheric bromeliad assemblages

    PubMed Central

    Chaves, Cleber Juliano Neves; Dyonisio, Júlio César; Rossatto, Davi Rodrigo

    2016-01-01

    Epiphytes are strongly dependent on the conditions created by their host's traits and a certain degree of specificity is expected between them, even if these species are largely abundant in a series of tree hosts of a given environment, as in the case of atmospheric bromeliads. Despite their considerable abundance in these environments, we hypothesize that stochasticity alone cannot explain the presence and abundance of atmospheric bromeliads on host trees, since host traits could have a greater influence on the establishment of these bromeliads. We used secondary and reforested seasonal forests and three distinct silvicultures to test whether species richness, phylogenetic diversity and functional diversity of trees can predict the differential presence, abundance and distribution of atmospheric bromeliads on hosts. We compared the observed parameters of their assemblage with null models and performed successive variance hierarchic partitions of abundance and distribution of the assemblage to detect the influence of multiple traits of the tree hosts. Our results do not indicate direct relationships between the abundance of atmospheric bromeliads and phylogenetic or functional diversity of trees, but instead indicate that bromeliads occurred on fewer tree species than expected by chance. We distinguished functional tree patterns that can improve or reduce the abundance of atmospheric bromeliads, and change their distribution on branches and trunk. While individual tree traits are related to increased abundance, species traits are related to the canopy distribution of atmospheric bromeliad assemblages. A balance among these tree functional patterns drives the atmospheric bromeliad assemblage of the forest patches. PMID:26888951

  14. Predicting changes in the distribution and abundance of species under environmental change

    PubMed Central

    Ehrlén, Johan; Morris, William F

    2015-01-01

    Environmental changes are expected to alter both the distribution and the abundance of organisms. A disproportionate amount of past work has focused on distribution only, either documenting historical range shifts or predicting future occurrence patterns. However, simultaneous predictions of abundance and distribution across landscapes would be far more useful. To critically assess which approaches represent advances towards the goal of joint predictions of abundance and distribution, we review recent work on changing distributions and on effects of environmental drivers on single populations. Several methods have been used to predict changing distributions. Some of these can be easily modified to also predict abundance, but others cannot. In parallel, demographers have developed a much better understanding of how changing abiotic and biotic drivers will influence growth rate and abundance in single populations. However, this demographic work has rarely taken a landscape perspective and has largely ignored the effects of intraspecific density. We advocate a synthetic approach in which population models accounting for both density dependence and effects of environmental drivers are used to make integrated predictions of equilibrium abundance and distribution across entire landscapes. Such predictions would constitute an important step forward in assessing the ecological consequences of environmental changes. PMID:25611188

  15. Predicting changes in the distribution and abundance of species under environmental change.

    PubMed

    Ehrlén, Johan; Morris, William F

    2015-03-01

    Environmental changes are expected to alter both the distribution and the abundance of organisms. A disproportionate amount of past work has focused on distribution only, either documenting historical range shifts or predicting future occurrence patterns. However, simultaneous predictions of abundance and distribution across landscapes would be far more useful. To critically assess which approaches represent advances towards the goal of joint predictions of abundance and distribution, we review recent work on changing distributions and on effects of environmental drivers on single populations. Several methods have been used to predict changing distributions. Some of these can be easily modified to also predict abundance, but others cannot. In parallel, demographers have developed a much better understanding of how changing abiotic and biotic drivers will influence growth rate and abundance in single populations. However, this demographic work has rarely taken a landscape perspective and has largely ignored the effects of intraspecific density. We advocate a synthetic approach in which population models accounting for both density dependence and effects of environmental drivers are used to make integrated predictions of equilibrium abundance and distribution across entire landscapes. Such predictions would constitute an important step forward in assessing the ecological consequences of environmental changes. PMID:25611188

  16. A landscape analysis of cougar distribution and abundance in Montana, USA.

    PubMed

    Riley, S J; Malecki, R A

    2001-09-01

    Recent growth in the distribution and abundance of cougars (Puma concolor) throughout western North America has created opportunities, challenges, and problems for wildlife managers and raises questions about what factors affect cougar populations. We present an analysis of factors thought to affect cougar distribution and abundance across the broad geographical scales on which most population management decisions are made. Our objectives were to: (1) identify and evaluate landscape parameters that can be used to predict the capability of habitats to support cougars, and (2) evaluate factors that may account for the recent expansion in cougar numbers. Habitat values based on terrain ruggedness and forested cover explained 73% of the variation in a cougar abundance index. Indices of cougar abundance also were spatially and temporally correlated with ungulate abundance. An increase in the number and total biomass of ungulate prey species is hypothesized to account for recent increases in cougars. Cougar populations in Montana are coping with land development by humans when other components of habitat and prey populations are sufficient. Our analysis provides a better understanding of what may have influenced recent growth in cougar distribution and abundance in Montana and, when combined with insights about stakeholder acceptance capacity, offers a basis for cougar management at broad scales. Long-term conservation of cougars necessitates a better understanding of ecosystem functions that affect prey distribution and abundance, more accurate estimates of cougar populations, and management abilities to integrate these components with human values. PMID:11531235

  17. Relating species abundance distributions to species-area curves in two Mediterranean-type shrublands

    USGS Publications Warehouse

    Keeley, J.E.

    2003-01-01

    Based on both theoretical and empirical studies there is evidence that different species abundance distributions underlie different species-area relationships. Here I show that Australian and Californian shrubland communities (at the scale from 1 to 1000 m2) exhibit different species-area relationships and different species abundance patterns. The species-area relationship in Australian heathlands best fits an exponential model and species abundance (based on both density and cover) follows a narrow log normal distribution. In contrast, the species-area relationship in Californian shrublands is best fit with the power model and, although species abundance appears to fit a log normal distribution, the distribution is much broader than in Australian heathlands. I hypothesize that the primary driver of these differences is the abundance of small-stature annual species in California and the lack of annuals in Australian heathlands. Species-area is best fit by an exponential model in Australian heathlands because the bulk of the species are common and thus the species-area curves initially rise rapidly between 1 and 100 m2. Annuals in Californian shrublands generate very broad species abundance distributions with many uncommon or rare species. The power function is a better model in these communities because richness increases slowly from 1 to 100 m2 but more rapidly between 100 and 1000 m2 due to the abundance of rare or uncommon species that are more likely to be encountered at coarser spatial scales. The implications of this study are that both the exponential and power function models are legitimate representations of species-area relationships in different plant communities. Also, structural differences in community organization, arising from different species abundance distributions, may lead to different species-area curves, and this may be tied to patterns of life form distribution.

  18. RNA biochemistry. Transcriptome-wide distribution and function of RNA hydroxymethylcytosine.

    PubMed

    Delatte, Benjamin; Wang, Fei; Ngoc, Long Vo; Collignon, Evelyne; Bonvin, Elise; Deplus, Rachel; Calonne, Emilie; Hassabi, Bouchra; Putmans, Pascale; Awe, Stephan; Wetzel, Collin; Kreher, Judith; Soin, Romuald; Creppe, Catherine; Limbach, Patrick A; Gueydan, Cyril; Kruys, Véronique; Brehm, Alexander; Minakhina, Svetlana; Defrance, Matthieu; Steward, Ruth; Fuks, François

    2016-01-15

    Hydroxymethylcytosine, well described in DNA, occurs also in RNA. Here, we show that hydroxymethylcytosine preferentially marks polyadenylated RNAs and is deposited by Tet in Drosophila. We map the transcriptome-wide hydroxymethylation landscape, revealing hydroxymethylcytosine in the transcripts of many genes, notably in coding sequences, and identify consensus sites for hydroxymethylation. We found that RNA hydroxymethylation can favor mRNA translation. Tet and hydroxymethylated RNA are found to be most abundant in the Drosophila brain, and Tet-deficient fruitflies suffer impaired brain development, accompanied by decreased RNA hydroxymethylation. This study highlights the distribution, localization, and function of cytosine hydroxymethylation and identifies central roles for this modification in Drosophila. PMID:26816380

  19. LogCauchy, log-sech and lognormal distributions of species abundances in forest communities

    USGS Publications Warehouse

    Yin, Z.-Y.; Peng, S.-L.; Ren, H.; Guo, Q.; Chen, Z.-H.

    2005-01-01

    Species-abundance (SA) pattern is one of the most fundamental aspects of biological community structure, providing important information regarding species richness, species-area relation and succession. To better describe the SA distribution (SAD) in a community, based on the widely used lognormal (LN) distribution model with exp(-x2) roll-off on Preston's octave scale, this study proposed two additional models, logCauchy (LC) and log-sech (LS), respectively with roll-offs of simple x-2 and e-x. The estimation of the theoretical total number of species in the whole community, S*, including very rare species not yet collected in sample, was derived from the left-truncation of each distribution. We fitted these three models by Levenberg-Marquardt nonlinear regression and measured the model fit to the data using coefficient of determination of regression, parameters' t-test and distribution's Kolmogorov-Smirnov (KS) test. Examining the SA data from six forest communities (five in lower subtropics and one in tropics), we found that: (1) on a log scale, all three models that are bell-shaped and left-truncated statistically adequately fitted the observed SADs, and the LC and LS did better than the LN; (2) from each model and for each community the S* values estimated by the integral and summation methods were almost equal, allowing us to estimate S* using a simple integral formula and to estimate its asymptotic confidence internals by regression of a transformed model containing it; (3) following the order of LC, LS, and LN, the fitted distributions became lower in the peak, less concave in the side, and shorter in the tail, and overall the LC tended to overestimate, the LN tended to underestimate, while the LS was intermediate but slightly tended to underestimate, the observed SADs (particularly the number of common species in the right tail); (4) the six communities had some similar structural properties such as following similar distribution models, having a common

  20. Species abundance in a forest community in South China: A case of poisson lognormal distribution

    USGS Publications Warehouse

    Yin, Z.-Y.; Ren, H.; Zhang, Q.-M.; Peng, S.-L.; Guo, Q.-F.; Zhou, G.-Y.

    2005-01-01

    Case studies on Poisson lognormal distribution of species abundance have been rare, especially in forest communities. We propose a numerical method to fit the Poisson lognormal to the species abundance data at an evergreen mixed forest in the Dinghushan Biosphere Reserve, South China. Plants in the tree, shrub and herb layers in 25 quadrats of 20 m??20 m, 5 m??5 m, and 1 m??1 m were surveyed. Results indicated that: (i) for each layer, the observed species abundance with a similarly small median, mode, and a variance larger than the mean was reverse J-shaped and followed well the zero-truncated Poisson lognormal; (ii) the coefficient of variation, skewness and kurtosis of abundance, and two Poisson lognormal parameters (?? and ??) for shrub layer were closer to those for the herb layer than those for the tree layer; and (iii) from the tree to the shrub to the herb layer, the ?? and the coefficient of variation decreased, whereas diversity increased. We suggest that: (i) the species abundance distributions in the three layers reflects the overall community characteristics; (ii) the Poisson lognormal can describe the species abundance distribution in diverse communities with a few abundant species but many rare species; and (iii) 1/?? should be an alternative measure of diversity.

  1. Abundant mitochondrial DNA variation and world-wide population structure in humpback whales.

    PubMed

    Baker, C S; Perry, A; Bannister, J L; Weinrich, M T; Abernethy, R B; Calambokidis, J; Lien, J; Lambertsen, R H; Ramírez, J U; Vasquez, O

    1993-09-01

    Hunting during the last 200 years reduced many populations of mysticete whales to near extinction. To evaluate potential genetic bottlenecks in these exploited populations, we examined mitochondrial DNA control region sequences from 90 individual humpback whales (Megaptera novaeangliae) representing six subpopulations in three ocean basins. Comparisons of relative nucleotide and nucleotype diversity reveal an abundance of genetic variation in all but one of the oceanic subpopulations. Phylogenetic reconstruction of nucleotypes and analysis of maternal gene flow show that current genetic variation is not due to postexploitation migration between oceans but is a relic of past population variability. Calibration of the rate of control region evolution across three families of whales suggests that existing humpback whale lineages are of ancient origin. Preservation of preexploitation variation in humpback whales may be attributed to their long life-span and overlapping generations and to an effective, though perhaps not timely, international prohibition against hunting. PMID:8367488

  2. Abundance estimation from multiple photo surveys: confidence distributions and reduced likelihoods for bowhead whales off Alaska.

    PubMed

    Schweder, Tore

    2003-12-01

    Maximum likelihood estimates of abundance are obtained from repeated photographic surveys of a closed stratified population with naturally marked and unmarked individuals. Capture intensities are assumed log-linear in stratum, year, and season. In the chosen model, an approximate confidence distribution for total abundance of bowhead whales, with an accompanying likelihood reduced of nuisance parameters, is found from a parametric bootstrap experiment. The confidence distribution depends on the assumed study protocol. A confidence distribution that is exact (except for the effect of discreteness) is found by conditioning in the unstratified case without unmarked individuals. PMID:14969476

  3. Accounting for dispersal and biotic interactions to disentangle the drivers of species distributions and their abundances

    PubMed Central

    Boulangeat, Isabelle; Gravel, Dominique; Thuiller, Wilfried

    2014-01-01

    Although abiotic factors, together with dispersal and biotic interactions, are often suggested to explain the distribution of species and their abundances, species distribution models usually focus on abiotic factors only. We propose an integrative framework linking ecological theory, empirical data and statistical models to understand the distribution of species and their abundances together with the underlying community assembly dynamics. We illustrate our approach with 21 plant species in the French Alps. We show that a spatially nested modelling framework significantly improves the model’s performance and that the spatial variations of species presence–absence and abundances are predominantly explained by different factors. We also show that incorporating abiotic, dispersal and biotic factors into the same model bring new insights to our understanding of community assembly. This approach, at the crossroads between community ecology and biogeography, is a promising avenue for a better understanding of species co-existence and biodiversity distribution. PMID:22462813

  4. Genome-wide detection of high abundance N6-methyladenosine sites by microarray

    PubMed Central

    Li, Yue; Wang, Yang; Zhang, Zhaolei; Zamudio, Alicia Viridiana; Zhao, Jing Crystal

    2015-01-01

    N6-methyladenosine (m6A), the most abundant internal RNA modification, functions in diverse biological processes, including regulation of embryonic stem cell self-renewal and differentiation. As yet, methods to detect m6A in the transcriptome rely on the availability and quality of an m6A antibody and are often associated with a high rate of false positives. Here, based on our observation that m6A interferes with A–T/U pairing, we report a microarray-based technology to map m6A sites in mouse embryonic stem cells. We identified 72 unbiased sites exhibiting high m6A levels from 66 PolyA RNAs. Bioinformatics analyses suggest identified sites are enriched on developmental regulators and may in some contexts modulate microRNA/mRNA interactions. Overall, we have developed microarray-based technology to capture highly enriched m6A sites in the mammalian transcriptome. This method provides an alternative means to identify m6A sites for certain applications. PMID:26092943

  5. A genome-wide survey reveals abundant rice blast R genes in resistant cultivars.

    PubMed

    Zhang, Xiaohui; Yang, Sihai; Wang, Jiao; Jia, Yanxiao; Huang, Ju; Tan, Shengjun; Zhong, Yan; Wang, Ling; Gu, Longjiang; Chen, Jian-Qun; Pan, Qinghua; Bergelson, Joy; Tian, Dacheng

    2015-10-01

    Plant resistance genes (R genes) harbor tremendous allelic diversity, constituting a robust immune system effective against microbial pathogens. Nevertheless, few functional R genes have been identified for even the best-studied pathosystems. Does this limited repertoire reflect specificity, with most R genes having been defeated by former pests, or do plants harbor a rich diversity of functional R genes, the composite behavior of which is yet to be characterized? Here, we survey 332 NBS-LRR genes cloned from five resistant Oryza sativa (rice) cultivars for their ability to confer recognition of 12 rice blast isolates when transformed into susceptible cultivars. Our survey reveals that 48.5% of the 132 NBS-LRR loci tested contain functional rice blast R genes, with most R genes deriving from multi-copy clades containing especially diversified loci. Each R gene recognized, on average, 2.42 of the 12 isolates screened. The abundant R genes identified in resistant genomes provide extraordinary redundancy in the ability of host genotypes to recognize particular isolates. If the same is true for other pathogens, many extant NBS-LRR genes retain functionality. Our success at identifying rice blast R genes also validates a highly efficient cloning and screening strategy. PMID:26248689

  6. Distribution and abundance of decapod crustacean larvae in the southeastern Bering Sea with emphasis on commercial species. Final report

    SciTech Connect

    Armstrong, D.A.; Incze, L.S.; Wencker, D.L.; Armstrong, J.L.

    1981-01-01

    Contents include: Distribution and abundance of king crab larvae, Paralithodes camtschatica and P. platypus in the southeast Bering Sea; Distribution and abundance of the larvae of tanner crabs in the southeastern Bering Sea; Distribution and abundance of other brachyuran larvae in the southeastern Bering Sea with emphasis on Erimacrus isenbeckii; Distribution and abundance of shrimp larvae in the southeastern Bering Sea with emphasis on pandalid species; Distribution and abundance of hermit crabs (Paguridae) in the southeasternBering Sea; Possible oil impacts on decapod larbae in the southeastern Bering Sea with emphesis on the St. George Basin.

  7. Distribution, abundance and diversity of crustose coralline algae on the Great Barrier Reef

    NASA Astrophysics Data System (ADS)

    Dean, Angela J.; Steneck, Robert S.; Tager, Danika; Pandolfi, John M.

    2015-06-01

    The Great Barrier Reef (GBR) is the world's largest coral reef ecosystem. Crustose coralline algae (CCA) are important contributors to reef calcium carbonate and can facilitate coral recruitment. Despite the importance of CCA, little is known about species-level distribution, abundance, and diversity, and how these vary across the continental shelf and key habitat zones within the GBR. We quantified CCA species distributions using line transects ( n = 127) at 17 sites in the northern and central regions of the GBR, distributed among inner-, mid-, and outer-shelf regions. At each site, we identified CCA along replicate transects in three habitat zones: reef flat, reef crest, and reef slope. Taxonomically, CCA species are challenging to identify (especially in the field), and there is considerable disagreement in approach. We used published, anatomically based taxonomic schemes for consistent identification. We identified 30 CCA species among 12 genera; the most abundant species were Porolithon onkodes, Paragoniolithon conicum (sensu Adey), Neogoniolithon fosliei, and Hydrolithon reinboldii. Significant cross-shelf differences were observed in CCA community structure and CCA abundance, with inner-shelf reefs exhibiting lower CCA abundance than outer-shelf reefs. Shelf position, habitat zone, latitude, depth, and the interaction of shelf position and habitat were all significantly associated with variation in composition of CCA communities. Collectively, shelf position, habitat, and their interaction contributed to 22.6 % of the variation in coralline communities. Compared to mid- and outer-shelf sites, inner-shelf sites exhibited lower relative abundances of N. fosliei and Lithophyllum species. Reef crest habitats exhibited greater abundance of N. fosliei than reef flat and reef slope habitats. Reef slope habitats exhibited lower abundance of P. onkodes, but greater abundance of Neogoniolithon clavycymosum than reef crest and reef slope habitats. These findings

  8. Distributed wavefront coding for wide angle imaging system

    NASA Astrophysics Data System (ADS)

    Larivière-Bastien, Martin; Zhang, Hu; Thibault, Simon

    2011-10-01

    The emerging paradigm of imaging systems, known as wavefront coding, which employs joint optimization of both the optical system and the digital post-processing system, has not only increased the degrees of design freedom but also brought several significant system-level benefits. The effectiveness of wavefront coding has been demonstrated by several proof-of-concept systems in the reduction of focus-related aberrations and extension of depth of focus. While previous research on wavefront coding was mainly targeted at imaging systems having a small or modest field of view (FOV), we present a preliminary study on wavefront coding applied to panoramic optical systems. Unlike traditional wavefront coding systems, which only require the constancy of the modulation transfer function (MTF) over an extended focus range, wavefront-coded panoramic systems particularly emphasize the mitigation of significant off-axis aberrations such as field curvature, coma, and astigmatism. The restrictions of using a traditional generalized cubic polynomial pupil phase mask for wide angle systems are studied in this paper. It is shown that a traditional approach can be used when the variation of the off-axis aberrations remains modest. Consequently, we propose to study how a distributed wavefront coding approach, where two surfaces are used for encoding the wavefront, can be applied to wide angle lenses. A few cases designed using Zemax are presented and discussed

  9. Distribution and abundance of pelagic tunicates in the North Yellow Sea

    NASA Astrophysics Data System (ADS)

    Franco, Pietro; Chen, Hongju; Liu, Guangxing

    2014-10-01

    In this paper, the distribution patterns and abundance of pelagic tunicates in the North Yellow Sea of China during the period 2006-2007 were analyzed. Zooplankton samples were obtained with vertical towing from bottom to surface using a WP2 plankton net (200 μm mesh size; mouth area: 0.25 m2). Five species belonging to two classes were identified: Oikopleura dioica, O. longicauda and Fritillaria borealis belonging to class Appendicularia; Salpa fusiformis and Doliolum denticulatum of class Thaliacea. O. dioica and O. longicauda were the dominant species, occurring in the samples of all four seasons, with different distribution patterns. Their maximum abundance were 1664.7 ind. m-3 (spring) and 1031.7 ind. m-3 (spring) respectively. Following Oikopleura spp. were D. denticulatum, which was found only in autumn with an average abundance of 149.6 ind. m-3, and S. fusiformis, which was detected all the year long except for autumn with low abundance (max. abundance 289.4 ind. m-3 in summer). Only a very small amount of F. borealis was detected in summer samples, with an average abundance of 2.7 ind. m-3. The relationship between tunicates abundances and the environmental factors was analyzed using the stepwise regression model for each species. The variation of appendicularian abundance showed a significant correlation with the surface water temperature and with the concentration of Chl- a. No relationship was found between tunicates abundance and salinity, likely due to the slight changes in surface salinity of the studied area during the four seasons. Salps abundance and that of doliolids were significantly correlated to bottom water temperature, indicating that these two species ( S. fusiformis and D. denticulatum) migrate vertically in the water column. In particular D. denticulatum, known to be a warm water species, showed not only an important correlation with water temperature, but also a spatial distribution connected to the warm currents in the North Yellow

  10. Species composition, distribution and abundance of chaetodontidae along reef transects in the Flores Sea

    NASA Astrophysics Data System (ADS)

    Adrim, Mohammad; Hutomo, Malikusworo

    Observations on chaetodontid fishes were made by applying a visual census technique at 13 coral reef locations in the Flores Sea region in October and November 1984. These observations were made along 50 m transect lines, parallel to the shore or the reef edge at depths between 3 to 12 m. Twenty-three species of Chaetodontidae were observed, representing three genera: Chaetodon (20 species), Heniochus (2 species) and Forcipiger (1 species). Chaetodon kleini, C. trifasciatus, C. melannotus and C. baronessa proved to be the most abundant species, and among them C. kleini and C. trifasciatus were the most widely distributed ones. Chaetodon semeion and C. mertensi were the rarest species. The greatest number of individuals (77) was counted at station 4.268 near Tanjung Burung, Sumbawa, while the greatest number of species (14) was observed at station 4.257, north of Komodo. The lowest number of individuals (17) was counted at station 4.175 near P. Bahuluang, Salayer, while station 4.251 near Teluk Slawi, Komodo, was inhabited by the smallest numbver of species (2). Numerical classification by using the Bray Curtis dissimilarity index resulted in three groups of entities. The first group was characterized by predomination of C. kleini and the second by predomination of C. melannotus. The third one was a loose group not characterized by any predominant species. The analyses indicated that the similarities of the chaetodontid communities between locations are not related to the distance between them, but rather to habitat conditions. For example predomination of C. melannotus is strongly related to the predomination of soft coral. Compared to other areas of Indonesia, e.g. Bali, Seribu Islands, Batam, Sunda Strait, and Ambon Bay, the Flores Sea reefs have a more abundant and more diverse chaetodontid fauna.

  11. The distribution and abundance of desert tortoises on the Nevada Test Site

    SciTech Connect

    Not Available

    1991-01-01

    This report presents the results of transect studies conducted from 1981--1986 to determine the distribution and abundance of desert tortoises (Gopherus agassizii) on the Nevada Test Site (NTS) and summarizes the current understanding of the distribution of this species on NTS. Seven hundred fifty-nine transect having a total length of 1,190.7 km were walked and 380 sign of tortoises were counted. The abundance of tortoises on NTS is low to very low relative to the other areas within this species' range. Tortoises appear to be more abundant on NTS on the bajadas and foothills of limestone and dolomite mountains than on mountains of volcanic origin. Sign of tortoises were found were 880 to 1600 m and sign was more abundant at higher elevations (>1200 m) than has been reported previously for Nevada. The scale of classification of vegetation associations available for NTS is too large to be useful for predicting tortoise abundance. Tortoises were found only in approximately the southern third of NTS. They probably do not occur in Yucca Flat or anywhere else north of the Control Point. A map of the northern boundary of the range of desert tortoises on NTS is presented and additional studies of the distribution and abundance of tortoises on NTS are recommended. 30 refs., 9 figs., 4 tabs.

  12. Genetic Variation among Endosymbionts of Widely Distributed Vestimentiferan Tubeworms

    PubMed Central

    Di Meo, Carol A.; Wilbur, Ami E.; Holben, William E.; Feldman, Robert A.; Vrijenhoek, Robert C.; Cary, S. Craig

    2000-01-01

    Vestimentiferan tubeworms thriving in sulfidic deep-sea hydrothermal vents and cold seeps are constrained by their nutritional reliance on chemoautotrophic endosymbionts. In a recent phylogenetic study using 16S ribosomal DNA, we found that endosymbionts from vent and seep habitats form two distinct clades with little variation within each clade. In the present study, we used two different approaches to assess the genetic variation among biogeographically distinct vestimentiferan symbionts. DNA sequences were obtained for the noncoding, internal transcribed spacer (ITS) regions of the rRNA operons of symbionts associated with six different genera of vestimentiferan tubeworms. ITS sequences from endosymbionts of host genera collected from different habitats and widely distributed vent sites were surprisingly conserved. Because the ITS region was not sufficient for distinguishing endosymbionts from different habitats or locations, we used a DNA fingerprinting technique, repetitive-extragenic-palindrome PCR (REP-PCR), to reveal differences in the distribution of repetitive sequences in the genomes of the bacterial endosymbionts. Most of the endosymbionts displayed unique REP-PCR patterns. A cladogram generated from these fingerprints reflected relationships that may be influenced by a variety of factors, including host genera, geographic location, and bottom type. PMID:10653731

  13. Abundance and distribution of ultramafic microbreccia in Moses Rock dike - Quantitative application of mapping spectroscopy

    NASA Technical Reports Server (NTRS)

    Mustard, John F.; Pieters, Carle M.

    1987-01-01

    Data from the Airborne Imaging Spectrometer were used to map the distribution and abundance of the serpentized ultramafic microbreccia (SUM) component in the Moses Rock dike, which is a Tertiary diatreme located on the Colorado Plateau in Utah. The geologic setting and composition of Moses Rock dike are discussed together with its texture and the relationship to the bedrock of surface materials. These observations along with laboratory spectroscopic data are used to interpret surface mineralogy of the dike and the surrounding regions from the imaging spectometer data. The spatial distribution and the abundance of the primary surface components were calculated using a nonlinear model for the mixing of spectra from multicomponent surfaces. The derived SUM distribution and abundance data support McGetchin's (1968) model for the emplacement of Moses Rock dike as a fluidized system.

  14. Distribution and abundance of fish larvae in the northern Ionian Sea (Eastern Mediterranean)

    NASA Astrophysics Data System (ADS)

    Granata, Antonia; Cubeta, Annaluce; Minutoli, Roberta; Bergamasco, Alessandro; Guglielmo, Letterio

    2011-09-01

    The purpose of this paper was to study the spatial distribution, abundance and composition of fish larvae in the northern Ionian Sea. Samples were collected to the 600 m depth with an electronic multinet BIONESS during the "INTERREG Italia-Grecia" oceanographic cruise carried out in March 2000 off the Apulian Italian coast. A total of 46 species of teleost early stages were collected, belonging to 38 genera and 22 families. Over 52% of the larvae identified were mesopelagic species, almost 27% were demersal and about 21% pelagic. A total of 307 myctophids, 69 clupeids and 61 gadid post-larvae dominated the community. Benthosema glaciale (mean 6.1 mm SL) was the most abundant species (21.6%), the most frequent in the samples (28.8%), and dominant in the whole study area (mean 1.4 ind/100 m3). Particular attention was given to the horizontal and vertical distribution and abundance of the three dominant post-larval species: Benthosema glaciale, Sprattus sprattus sprattus and Notoscopelus elongatus. The Pearson coefficient ( R = 0.734) showed a high correlation between total zooplankton and fish larval assemblages in terms of spatial distribution abundance values. Regarding the vertical distribution of fish larvae, Sorensen's index ( S = 0.69) showed that fish larvae and total zooplankton abundance peaks co-occurred along the water column.

  15. Efficient estimation of abundance for patchily distributed populations via two-phase, adaptive sampling.

    USGS Publications Warehouse

    Conroy, M.J.; Runge, J.P.; Barker, R.J.; Schofield, M.R.; Fonnesbeck, C.J.

    2008-01-01

    Many organisms are patchily distributed, with some patches occupied at high density, others at lower densities, and others not occupied. Estimation of overall abundance can be difficult and is inefficient via intensive approaches such as capture-mark-recapture (CMR) or distance sampling. We propose a two-phase sampling scheme and model in a Bayesian framework to estimate abundance for patchily distributed populations. In the first phase, occupancy is estimated by binomial detection samples taken on all selected sites, where selection may be of all sites available, or a random sample of sites. Detection can be by visual surveys, detection of sign, physical captures, or other approach. At the second phase, if a detection threshold is achieved, CMR or other intensive sampling is conducted via standard procedures (grids or webs) to estimate abundance. Detection and CMR data are then used in a joint likelihood to model probability of detection in the occupancy sample via an abundance-detection model. CMR modeling is used to estimate abundance for the abundance-detection relationship, which in turn is used to predict abundance at the remaining sites, where only detection data are collected. We present a full Bayesian modeling treatment of this problem, in which posterior inference on abundance and other parameters (detection, capture probability) is obtained under a variety of assumptions about spatial and individual sources of heterogeneity. We apply the approach to abundance estimation for two species of voles (Microtus spp.) in Montana, USA. We also use a simulation study to evaluate the frequentist properties of our procedure given known patterns in abundance and detection among sites as well as design criteria. For most population characteristics and designs considered, bias and mean-square error (MSE) were low, and coverage of true parameter values by Bayesian credibility intervals was near nominal. Our two-phase, adaptive approach allows efficient estimation of

  16. Abundance and size distribution dynamics of abyssal epibenthic megafauna in the northeast Pacific.

    PubMed

    Ruhl, Henry A

    2007-05-01

    The importance of interannual variation in deep-sea abundances is now becoming recognized. There is, however, relatively little known about what processes dominate the observed fluctuations. The abundance and size distribution of the megabenthos have been examined here using a towed camera system at a deep-sea station in the northeast Pacific (Station M) from 1989 to 2004. This 16-year study included 52 roughly seasonal transects averaging 1.2 km in length with over 35600 photographic frames analyzed. Mobile epibenthic megafauna at 4100 m depth have exhibited interannual scale changes in abundance from one to three orders of magnitude. Increases in abundance have now been significantly linked to decreases in mean body size, suggesting that accruals in abundance probably result from the recruitment of young individuals. Examinations of size-frequency histograms indicate several possible recruitment events. Shifts in size-frequency distributions were also used to make basic estimations of individual growth rates from 1 to 6 mm/month, depending on the taxon. Regional intensification in reproduction followed by recruitment within the study area could explain the majority of observed accruals in abundance. Although some adult migration is certainly probable in accounting for local variation in abundances, the slow movements of benthic life stages restrict regional migrations for most taxa. Negative competitive interactions and survivorship may explain the precipitous declines of some taxa. This and other studies have shown that abundances from protozoans to large benthic invertebrates and fishes all have undergone significant fluctuations in abundance at Station M over periods of weeks to years. PMID:17536411

  17. Estimating species occurrence, abundance, and detection probability using zero-inflated distributions

    USGS Publications Warehouse

    Wenger, S.J.; Freeman, Mary C.

    2008-01-01

    Researchers have developed methods to account for imperfect detection of species with either occupancy (presence-absence) or count data using replicated sampling. We show how these approaches can be combined to simultaneously estimate occurrence, abundance, and detection probability by specifying a zero-inflated distribution for abundance. This approach may be particularly appropriate when patterns of occurrence and abundance arise from distinct processes operating at differing spatial or temporal scales. We apply the model to two data sets: (1) previously published data for a species of duck, Anas platyrhynchos, and (2) data for a stream fish species, Etheostoma scotti. We show that in these cases, an incomplete-detection zero-inflated modeling approach yields a superior fit to the data than other models. We propose that zero-inflated abundance models accounting for incomplete detection be considered when replicate count data are available.

  18. Quantitative and In-Depth Survey of the Isotopic Abundance Distribution Errors in Shotgun Proteomics.

    PubMed

    Chang, Cheng; Zhang, Jiyang; Xu, Changming; Zhao, Yan; Ma, Jie; Chen, Tao; He, Fuchu; Xie, Hongwei; Zhu, Yunping

    2016-07-01

    Accuracy is an important metric when mass spectrometry (MS) is used in large-scale quantitative proteomics research. For MS-based quantification by extracting ion chromatogram (XIC), both the mass and intensity dimensions must be accurate. Although much research has focused on mass accuracy in recent years, less attention has been paid to intensity errors. Here, we investigated signal intensity measurement errors systematically and quantitatively using the natural properties of isotopic distributions. First, we defined a normalized isotopic abundance error model and presented its merits and demerits. Second, a comprehensive survey of the isotopic abundance errors using data sets with increasing sample complexities and concentrations was performed. We examined parameters such as error distribution, relationships between signal intensities within one isotopic cluster, and correlations between different peak errors in isotopic profiles. Our data demonstrated that the high resolution MS platforms might also generate large isotopic intensity measurement errors (approximately 20%). Meanwhile, this error can be reduced to less than 5% using a novel correction algorithm, which is based on the theoretical isotopic abundance distribution. Finally, a nonlinear relationship was observed as the abundance error decreased in isotopic profiles with higher intensity. Our findings are expected to provide insight into isotopic abundance recalibration in quantitative proteomics. PMID:27266261

  19. Predictors of the distribution and abundance of a tube sponge and its resident goby

    NASA Astrophysics Data System (ADS)

    D'Aloia, C. C.; Majoris, J. E.; Buston, P. M.

    2011-09-01

    Microhabitat specialists offer tractable systems for studying the role of habitat in determining species' distribution and abundance patterns. While factors underlying the distribution patterns of these specialists have been studied for decades, few papers have considered factors influencing both the microhabitat and the inhabitant. On the Belizean barrier reef, the obligate sponge-dwelling goby Elacatinus lori inhabits the yellow tube sponge Aplysina fistularis. We used field data and multivariate analyses to simultaneously consider factors influencing sponge and goby distributions. Sponges were non-randomly distributed across the reef with density peaking at a depth of 10-20 m. Sponge morphology also varied with depth: sponges tended to be larger and have fewer tubes with increasing depth. Knowing these patterns of sponge distribution and morphology, we considered how they influenced the distribution of two categories of gobies: residents (≥18 mm SL) and settlers (<18 mm SL). Maximum tube length, number of sponge tubes, and depth were significant predictors of resident distribution. Residents were most abundant in large sponges with multiple tubes, and were virtually absent from sponges shallower than 10 m. Similarly, maximum tube length and number of sponge tubes were significant predictors of settler distribution, with settlers most abundant in large sponges with multiple tubes. The presence or absence of residents in a sponge was not a significant predictor of settler distribution. These results provide us with a clear understanding of where sponges and gobies are found on the reef and support the hypothesis that microhabitat characteristics are good predictors of fish abundance for species that are tightly linked to microhabitat.

  20. Hotspots in cold seas: The composition, distribution, and abundance of marine birds in the North American Arctic

    NASA Astrophysics Data System (ADS)

    Wong, Sarah N. P.; Gjerdrum, Carina; Morgan, Ken H.; Mallory, Mark L.

    2014-03-01

    The distribution and thickness of sea ice in the Arctic is changing rapidly, resulting in changes to Arctic marine ecosystems. Seabirds are widely regarded as indicators of marine environmental change, and understanding their distribution patterns can serve as a tool to monitor and elucidate biological changes in the Arctic seas. We examined the at-sea distribution of seabirds in the North American Arctic in July and August, 2007-2012, and marine areas of high density were identified based on bird densities for four foraging guilds. Short-tailed shearwaters (Puffinus tenuirostris) were the most abundant species observed. Northern fulmars (Fulmarus glacialis), thick-billed murres (Uria lomvia), and dovekies (Alle alle) were also sighted in large numbers. Few birds were sighted between Dolphin and Union Strait and King William Island. Areas of high density over multiple years were found throughout the entire western portion of the study area (Bering Sea, Bering Strait, and Chukchi Sea), Lancaster Sound, Baffin Bay, Davis Strait, and the low Arctic waters off Newfoundland. These waters are characterized by high primary productivity. This study is the first to document the marine distribution of seabirds across the entire North American Arctic within the same time period, providing a critical baseline for monitoring the distribution and abundance of Arctic seabirds in a changing Arctic seascape.

  1. Critical metals in manganese nodules from the Cook Islands EEZ, abundances and distributions

    USGS Publications Warehouse

    Hein, James R.; Spinardi, Francesca; Okamoto, Nobuyuki; Mizell, Kira; Thorburn, Darryl; Tawake, Akuila

    2015-01-01

    Compiled data from a series of four cruises by the Japan International Cooperation Agency and the Mining agency of Japan from 1985 to 2000 were used to generate a map that defines the statistical distribution of nodule abundance throughout the EEZ, except the Manihiki Plateau. The abundance distribution map shows a belt of high nodule abundance (19–45 kg/m2) that starts in the southeast corner of the EEZ, runs northwest, and also bifurcates into a SW trending branch. Small, isolated areas contain abundances of nodules of up to 58 kg/m2. Six ~ 20,000 km2 areas of particularly high abundance were chosen to represent potential exploration areas, and maps for metal concentration were generated to visualize metal distribution and to extrapolate estimated metal tonnages within the six sites and the EEZ as a whole. Grades for Mn, Cu, and Ni are low in CIs nodules in areas of high abundance; however, Ti, Co, and REY show high contents where nodule abundances are high. Of the six areas identified to represent a range of metal contents, one at the northern end of the N-S abundance main belt optimizes the most metals and would yield the highest dry metric tons for Mn (61,002,292), Ni (1,247,834), Mo (186,166), V (356,247), W (30,215), and Zr (195,323). When compared with the Clarion–Clipperton Zone, the CIs nodules show higher nodule abundances (> 25 kg/m2 over ~ 123,844 km2), and are more enriched in the green-tech, high-tech, and energy metals Co, Ti, Te, Nb, REY, Pt, and Zr. The CIs EEZ shows a significant resource potential for these critical metals due to their high prices, high demand, and the high nodule abundance, which will allow for a smaller footprint for a 20-year mine site and therefore smaller environmental impact.

  2. Factors determining the distribution and abundance of Dreissena polymorpha in lakes, dam reserviors and channels

    SciTech Connect

    Karatayev, A.

    1995-06-01

    This article addresses the several factors affecting the distribution and abundance of Dreissena polymorphia in bodies of water. Factors covered include: (1) salinity, (2) oxygen level, (3) temperature, (4) substrate, (5) depth, and (6) water chemistry. The analysis of the data allowed the specification of limiting or optimal concentrations of the principle abiotic parameters.

  3. EMBATTLED BIVALVES: BIOGEOGRAPHIC DISTRIBUTIONS AND ABUNDANCES FROM THE BEAUFORT SEA TO THE GULF OF CALIFORNIA

    EPA Science Inventory

    As part of an EPA/USGS project to predict the relative vulnerability of near-coastal species to climate change, we have synthesized in a web-based tool, the Coastal Biogeographic Risk Analysis Tool (CBRAT), the biogeographic distributions and abundances of bivalves, found in dept...

  4. Distribution and abundance of the Japanese snail, Viviparus japonicus, and associated macrobenthos in Sandusky Bay, Ohio

    USGS Publications Warehouse

    Wolfert, David R.; Hiltunen, Jarl K.

    1968-01-01

    A survey of the macrobenthos of Sandusky Bay, Lake Erie, in June, 1963, provided information on the abundance and distribution of the introduced Japanese snail, Viviparus japonicus, which has become a nuisance to commercial seine fishermen. The abundance and distribution varied considerably within the bay; at the time of the survey, most snails were found near the north-central shore. Environmental characteristics were nearly uniform and had no apparent effect on the distribution; concentrations in different areas at different times appeared to result from water movements induced by winds. The time of the study coincided with a period of reproduction; young-of-the-year snails were most abundant in areas where adults were most common. The frequency distributions of shell height and diameter suggested the presence of two age groups of adults in the population. Considerable natural mortality was seen, both at the time of the study and in other seasons. Only three other gastropods were observed in the bay; the most abundant was another viviparid, Campeloma decisum. Other mollusks present were four species of Sphaeriidae and 18 species of Unionidae. A summary of invertebrates found, other than the mollusks, is also presented.

  5. A determination of the thick disk chemical abundance distribution: Implications for galaxy evolution

    NASA Technical Reports Server (NTRS)

    Gilmore, Gerard; Wyse, Rosemary F. G.; Jones, Bryn J.

    1995-01-01

    We present a determination of the thick disk iron abundance distribution obtained from an in situ sample of F/G stars. These stars are faint, 15 less than or approximately = V less than or approximately = 18, selected on the basis of color, being a subset of the larger survey of Gilmore and Wyse designed to determine the properties of the stellar populations several kiloparsecs from the Sun. The fields studied in the present paper probe the iron abundance distribution of the stellar populations of the galaxy at 500-3000 pc above the plane, at the solar Galactocentric distance. The derived chemical abundance distributions are consistent with no metallicity gradients in the thick disk over this range of vertical distance, and with an iron abundance distribution for the thick disk that has a peak at -0.7 dex. The lack of a vertical gradient argues against slow, dissipational settling as a mechanism for the formation of the thick disk. The photometric and metallicity data support a turn-off of the thick disk that is comparable in age to the metal-rich globular clusters, or greater than or approximately = 12 Gyr, and are consistent with a spread to older ages.

  6. Rényi entropy, abundance distribution, and the equivalence of ensembles

    NASA Astrophysics Data System (ADS)

    Mora, Thierry; Walczak, Aleksandra M.

    2016-05-01

    Distributions of abundances or frequencies play an important role in many fields of science, from biology to sociology, as does the Rényi entropy, which measures the diversity of a statistical ensemble. We derive a mathematical relation between the abundance distribution and the Rényi entropy, by analogy with the equivalence of ensembles in thermodynamics. The abundance distribution is mapped onto the density of states, and the Rényi entropy to the free energy. The two quantities are related in the thermodynamic limit by a Legendre transform, by virtue of the equivalence between the micro-canonical and canonical ensembles. In this limit, we show how the Rényi entropy can be constructed geometrically from rank-frequency plots. This mapping predicts that non-concave regions of the rank-frequency curve should result in kinks in the Rényi entropy as a function of its order. We illustrate our results on simple examples, and emphasize the limitations of the equivalence of ensembles when a thermodynamic limit is not well defined. Our results help choose reliable diversity measures based on the experimental accuracy of the abundance distributions in particular frequency ranges.

  7. BIVALVE BIOGEOGRAPHIC DISTRIBUTIONS, ABUNDANCES, AND CLIMATE VULNERABILITY FROM THE BEAUFORT SEA TO THE GULF OF CALIFORNIA

    EPA Science Inventory

    As part of an U.S. EPA/USGS project to predict the relative vulnerability of near-coastal species to climate change along the Pacific Coast, we have synthesized the biogeographic distributions and abundances of bivalves found in depths <200 m. We have included the twelve &ldqu...

  8. Distribution, abundance and diversity of the extremely halophilic bacterium Salinibacter ruber

    PubMed Central

    Antón, Josefa; Peña, Arantxa; Santos, Fernando; Martínez-García, Manuel; Schmitt-Kopplin, Philippe; Rosselló-Mora, Ramon

    2008-01-01

    Since its discovery in 1998, representatives of the extremely halophilic bacterium Salinibacter ruber have been found in many hypersaline environments across the world, including coastal and solar salterns and solar lakes. Here, we review the available information about the distribution, abundance and diversity of this member of the Bacteroidetes. PMID:18957079

  9. Abundance and Distribution of Synechococcus spp. and Cyanophages in the Chesapeake Bay▿†

    PubMed Central

    Wang, Kui; Wommack, K. Eric; Chen, Feng

    2011-01-01

    Despite the increasing knowledge of Synechococcus spp. and their co-occurring cyanophages in oceanic and coastal water, little is known about their abundance, distribution, and interactions in the Chesapeake Bay estuarine ecosystem. A 5-year interannual survey shows that Synechococcus spp. and their phages are persistent and abundant members of Chesapeake Bay microbial communities. Synechococcus blooms (106 cells ml−1) were often observed in summer throughout the Bay, contributing 20 to 40% of total phytoplankton chlorophyll a. The distribution of phycoerythrin-containing (PE-rich) Synechococcus cells appeared to mostly correlate with the salinity gradient, with higher abundances at higher salinities. Cyanophages infectious to Synechococcus were also abundant (up to 6 × 105 viruses ml−1 by the most probable number assay) during summer months in the Bay. The covariation in abundance of Synechococcus spp. and cyanophages was evident, although the latitude of observed positive correlation varied in different years, mirroring the changing environmental conditions and therefore the host-virus interactions. The impacts of cyanophages on host Synechococcus populations also varied spatially and temporally. Higher phage-related Synechococcus mortality was observed in drought years. Virus-mediated host mortality and subsequent liberation of dissolved organic matter (DOM) may substantially influence oceanic biogeochemical processing through the microbial loop as well as the microbial carbon pump. These observations emphasize the influence of environmental gradients on natural Synechococcus spp. and their phage population dynamics in the estuarine ecosystem. PMID:21821760

  10. Evidence for Widely Distributed Ammonia Ice on Jupiter

    NASA Astrophysics Data System (ADS)

    Sromovsky, Lawrence A.; Fry, P. M.

    2009-09-01

    Analysis of near-IR VIMS spectra of Jupiter implies the existence of cloud layers with substantial 3-micron absorption. This was also inferred from ISO spectra (Brooke et al., 1998, Icarus 136, 1-13) and from NIMS spectra (Irwin et al. 2001, Icarus 149, 397-415). Brooke et al. obtained good fits at 3-microns using ammonia as the absorber, but Irwin et al. rejected ammonia because a key 2-micron feature was absent. However, we find that NICMOS center-to-limb observations of Jupiter's low latitudes (PID 10161, de Pater, PI) are difficult to explain without a cloud layer that preferentially absorbs light near 2 microns. The combined evidence of 2-micron (NICMOS) and 3-micron (VIMS) absorptions indicate that ammonia ice particles are present, not just over the tiny fraction of Jupiter where Spectrally Identifiable Ammonia Clouds (SIACs) are observed (Baines et al. 2002, Icarus 159,74-94), but widely distributed, as suggested by other modeling efforts based on ISO spectra (Brooke et al., 1998) and SIRS spectra (Wong et al., 2004, P&SS 52, 385-395). We find good fits to both NICMOS and VIMS observations with a dual middle cloud layer, the lower of which (500-750 mb) is composed of ammonia ice, and the upper of which (350-450 mb) is gray and somewhat absorbing. This upper layer serves to mask the sharpest absorption feature of ammonia at wavelengths near 3 microns, without resorting to coating by other condensibles. Although 10-micron radius ammonia particles produce distinct 2-micron absorption features that are not seen in VIMS spectra, smaller particles produce less distinctive features and appear capable of fitting both VIMS spectra and NICMOS imaging observations. The most variable layer is 150-250 mb or more deeper than the ammonia layer and possibly composed of NH4SH. This work was supported by NASA's Outer Planet Data Analysis and Cassini Data Analysis Programs.

  11. Wide-FOV FPAs for a shipboard distributed aperture system

    NASA Astrophysics Data System (ADS)

    Gulbransen, David J.; Black, Stephen H.; Childs, A. C.; Fletcher, Christopher L.; Johnson, Scott M.; Radford, William A.; Venzor, Gregory M.; Sienicki, J. P.; Thompson, A. D.; Griffith, J. H.; Buell, Aimee A.; Vilela, M. F.; Newton, Michael D.; Takken, Edward H.; Waterman, James R.; Krapels, Keith A.

    2004-08-01

    The Navy faces an ever evolving threat scenario, ranging from sub-sonic sea skimming cruise missiles to newer, unconventional threats such as that experienced by the USS Cole. Next generation naval technology development programs are developing "stealthy" ships by reducing a ships radar cross section and controlling electromagnetic emissions. To meet these threat challenges in an evolving platform environment, ONR has initiated the "Wide Aspect MWIR Array" program. In support of this program, Raytheon Vision Systems (RVS) is developing a 2560 X 512 element focal plane array, utilizing Molecular Beam Epitaxially grown HgCdTe on silicon detector technology. RVS will package this array in a sealed Dewar with a long-life cryogenic cooler, electronics, on-gimbal power conditioning and a thermal reference source. The resulting sub system will be a component in a multi camera distributed aperture situation awareness sensor, which will provide continuous surveillance of the horizon. We will report on the utilization of MWIR Molecular Beam Epitaxial HgCdTe on Silicon material for fabrication of the detector arrays. Detector arrays fabricated on HgCdTe/Si have no thermal expansion mismatch relative to the readout integrated circuits. Therefore large-area focal plane arrays (FPAs) can be developed without concern for thermal cycle reliability. In addition these devices do not require thinning or reticulation like InSb FPAs to yield the high levels of Modulation Transfer Function (MTF) required by a missile warning sensor. HgCdTe/Si wafers can be scaled up to much larger sizes than the HgCdTe/CdZnTe wafers. Four-inch-diameter HgCdTe/Si wafers are currently being produced and are significantly larger than the standard 1.7 inch x 2.6 inch HgCdTe/CdTe wafers. The use of Si substrates also enables the use of automated semiconductor fabrication equipment.

  12. Quantifying quagga mussel veliger abundance and distribution in Copper Basin Reservoir (California) using acoustic backscatter.

    PubMed

    Anderson, Michael A; Taylor, William D

    2011-11-01

    Quagga mussels (Dreissena bugensis) have been linked to oligotrophication of lakes, alteration of aquatic food webs, and fouling of infrastructure associated with water supply and power generation, causing potentially billions of dollars in direct and indirect damages. Understanding their abundance and distribution is key in slowing their advance, assessing their potential impacts, and evaluating effectiveness of control strategies. Volume backscatter strength (Sv) measurements at 201- and 430-kHz were compared with quagga mussel veliger and zooplankton abundances determined from samples collected using a Wisconsin closing net from the Copper Basin Reservoir on the Colorado River Aqueduct. The plankton within the lower portion of the water column (>18 m depth) was strongly dominated by D-shaped quagga mussel veligers, comprising up to 95-99% of the community, and allowed direct empirical measurement of their mean backscattering cross-section. The upper 0-18 m of the water column contained a smaller relative proportion of veligers based upon net sampling. The difference in mean volume backscatter strength at these two frequencies was found to decrease with decreasing zooplankton abundance (r(2) = 0.94), allowing for correction of Sv due to the contribution of zooplankton and the determination of veliger abundance in the reservoir. Hydroacoustic measurements revealed veligers were often present at high abundances (up to 100-200 ind L(-1)) in a thin 1-2 m layer at the thermocline, with considerable patchiness in their distribution observed along a 700 m transect on the reservoir. Under suitable conditions, hydroacoustic measurements can rapidly provide detailed information on the abundance and distribution of quagga mussel veligers over large areas with high horizontal and vertical resolution. PMID:21906773

  13. The Distribution and Abundance of an Island Population of Koalas (Phascolarctos cinereus) in the Far North of Their Geographic Range

    PubMed Central

    McGregor, Denise C.; Kerr, Sarah E.; Krockenberger, Andrew K.

    2013-01-01

    Koalas are an iconic species of charismatic megafauna, of substantial social and conservation significance. They are widely distributed, often at low densities, and individuals can be difficult to detect, making population surveys challenging and costly. Consequently, koala population estimates have been limited and the results inconsistent. The aims of this study were to estimate the distribution, relative abundance and population size of the koalas on Magnetic Island, far north Queensland. Population densities were estimated in 18 different vegetation types present on the island using a Fecal Standing Crop Method. Koala density ranged from 0.404 ha−1, recorded in forest red gum and bloodwood woodland, to absence from eight of the vegetation types surveyed. The second highest density of 0.297 koalas ha−1 was recorded in mixed eucalypt woodland, which covers 45% of the island. The total abundance of koalas on Magnetic Island, not including those present in urban areas, was estimated at 825±175 (SEM). The large variation in koala density across vegetation types reinforces the need for sampling stratification when calculating abundance over large areas, as uniformity of habitat quality cannot be assumed. In this context, koala populations also occur in low densities in areas generally regarded as poor quality koala habitat. These results highlight the importance of protecting vegetation communities not traditionally considered to have high conservation value to koalas, as these habitats may be essential for maintaining viable, widespread, low-density populations. The results from this study provide a baseline to assess future trends in koala distribution, density and abundance on Magnetic Island. PMID:23527258

  14. Seasonal Abundance, Spatial Distribution, Spawning and Growth of Astropecten irregularis (Echinodermata: Asteroidea)

    NASA Astrophysics Data System (ADS)

    Freeman, S. M.; Richardson, C. A.; Seed, R.

    2001-07-01

    Seasonal trends in the abundance, spatial distribution, spawning and growth of a population of Astropecten irregularis inhabiting the coastal waters of North Wales are described. Population densities of A. irregularis varied seasonally with starfish attaining their maximum and minimum abundances in summer and winter respectively. Changes in their spatial distribution strongly suggests that A. irregularis migrates offshore into deeper waters during the winter months probably to avoid strong onshore wave surges. High population densities of starfish which occur during the summer months may be associated with spawning aggregations or the availability of suitable prey species; a smaller peak in starfish abundance occurred during autumn 1997 coinciding with the settlement of the bivalve Spisula subtruncata and the cumacean Diastylis rugosa , prey species which are readily consumed by A. irregularis. Astropecten irregularis spawned during late spring-early summer, but thereafter the gonad somatic index remained at a low level until late autumn; the index increased throughout winter and starfish attained peak reproductive condition by late spring. Small starfish (arm length <24 mm), showed little evidence of reproductive development. Limited recruitment of A. irregularis (<8 mm) occurred during October-November 1996, and the integration of this small cohort into the main population occurred within one year. Locomotory activity and burrowing depth of starfish maintained in laboratory aquaria correlated with changes in seawater temperature; activity was largely inhibited and burrowing depth significantly increased at temperatures <8 °C. Seawater temperature is probably an important factor regulating the abundance and distribution of A. irregularis in coastal waters.

  15. Distribution, abundance, and habitat associations of a large bivalve (Panopea generosa) in a eutrophic, fjord estuary

    USGS Publications Warehouse

    Mcdonald, P. Sean; Essington, Timothy E.; Davis, Jonathan P.; Galloway, Aaron W.E.; Stevick, Bethany C.; Jensen, Gregory C.; Vanblaricom, Glenn R.; Armstrong, David A.

    2015-01-01

    Marine bivalves are important ecosystem constituents and frequently support valuable fisheries. In many nearshore areas, human disturbance—including declining habitat and water quality—can affect the distribution and abundance of bivalve populations, and complicate ecosystem and fishery management assessments. Infaunal bivalves, in particular, are frequently cryptic and difficult to detect; thus, assessing potential impacts on their populations requires suitable, scalable methods for estimating abundance and distribution. In this study, population size of a common benthic bivalve (the geoduck Panopea generosa) is estimated with a Bayesian habitat-based model fit to scuba and tethered camera data in Hood Canal, a fjord basin in Washington state. Densities declined more than two orders of magnitude along a north—south gradient, concomitant with patterns of deepwater dissolved oxygen, and intensity and duration of seasonal hypoxia. Across the basin, geoducks were most abundant in loose, unconsolidated, sand substrate. The current study demonstrates the utility of using scuba, tethered video, and habitat models to estimate the abundance and distribution of a large infaunal bivalve at a regional (385-km2) scale.

  16. Elemental Abundance Distributions in Basalt Clays and Meteorites: Is It a Biosignature?

    NASA Technical Reports Server (NTRS)

    Fisk, M. R.; Storrie-Lombardi, M. C.; Joseph, J.

    2005-01-01

    Volcanic glass altered by microorganisms exhibits distinctive textures differing significantly from abiotic alteration [1-4]. We have previously presented morphological evidence of bioweathering in sub-oceanic basalt glass [5] and olivine [6], and noted similar alterations in Nakhla [7]. We have also introduced an autonomous Bayesian probabilistic classification methodology to identify biotic and abiotic alteration in sub-oceanic basalts using elemental abundance data [8]. We now present data from multiple sub-oceanic sites addressing the more general question of utilizing elemental abundance distribution in clays as a valid biosignature for the exploration of putative clay alteration products in meteorites.

  17. Species abundance distribution and population dynamics in a two-community model of neutral ecology

    NASA Astrophysics Data System (ADS)

    Vallade, M.; Houchmandzadeh, B.

    2006-11-01

    Explicit formulas for the steady-state distribution of species in two interconnected communities of arbitrary sizes are derived in the framework of Hubbell’s neutral model of biodiversity. Migrations of seeds from both communities as well as mutations in both of them are taken into account. These results generalize those previously obtained for the “island-continent” model and they allow an analysis of the influence of the ratio of the sizes of the two communities on the dominance/diversity equilibrium. Exact expressions for species abundance distributions are deduced from a master equation for the joint probability distribution of species in the two communities. Moreover, an approximate self-consistent solution is derived. It corresponds to a generalization of previous results and it proves to be accurate over a broad range of parameters. The dynamical correlations between the abundances of a species in both communities are also discussed.

  18. Distribution and abundance of burrowing mayflies (Hexagenia spp.) in Lake Erie, 1997-2005

    USGS Publications Warehouse

    Krieger, K.A.; Bur, M.T.; Ciborowski, J.J.H.; Barton, D.R.; Schloesser, D.W.

    2007-01-01

    Burrowing mayflies (Hexagenia limbata and H. rigida) recolonized sediments of the western basin of Lake Erie in the 1990s following decades of pollution abatement. We predicted that Hexageniawould also disperse eastward or expand from existing localized populations and colonize large regions of the other basins. We sampled zoobenthos in parts of the western and central basins yearly from 1997–2005, along the north shore of the eastern basin in 2001–2002, and throughout the lake in 2004. In the island area of the western basin, Hexagenia was present at densities ≤1,278 nymphs/m2and exhibited higher densities in odd years than even years. By contrast, Hexagenia became more widespread in the central basin from 1997–2000 at densities ≤48 nymphs/m2 but was mostly absent from 2001–2005. Nymphs were found along an eastern basin transect at densities ≤382/m2 in 2001 and 2002. During the 2004 lake-wide survey, Hexagenia was found at 63 of 89 stations situated throughout the western basin (≤1,636 nymphs/m2, mean = 195 nymphs/m2, SE = 32, N = 89) but at only 7 of 112 central basin stations, all near the western edge of the basin (≤708 nymphs/m2), and was not found in the eastern basin. Hexagenia was found at 2 of 62 stations (≤91 nymphs/m2) in harbors, marinas, and tributaries along the south shore of the central basin in 2005. Oxygen depletion at the sediment-water interface and cool temperatures in the hypolimnion are probably the primary factors preventing successful establishment throughout much of the central basin. Hexagenia can be a useful indicator of lake quality where its distribution and abundance are limited by anthropogenic causes.

  19. Spatial-temporal scales of synchrony in marine zooplankton biomass and abundance patterns: A world-wide comparison

    NASA Astrophysics Data System (ADS)

    Batchelder, Harold P.; Mackas, David L.; O'Brien, Todd D.

    2012-05-01

    Large scale synchrony in the fluctuations of abundance or biomass of marine fish populations in regions on opposite sides of an ocean basin or in different oceans have been viewed as externally forced by correlated environmental stochasticity (e.g., common external forcing), most often as atmospheric teleconnections of basin-to-global scale atmospheric forcing, such as the Arctic Oscillation, North Atlantic Oscillation or the Pacific Decadal Oscillation. Specific causal mechanisms have been difficult to unequivocally discover, but possible mechanisms include influences on habitat temperatures, productivity operating through bottom-up (trophodynamic) mechanisms or direct climate influence on the fish populations (top-down mechanisms). For small pelagic fishes (sardines and anchovies) in widely separated large marine ecosystems that lack obvious ocean interconnectivity, it has been argued that the teleconnections may be atmospheric, acting on the fishes directly and propagating to the ecosystem from the middle out (wasp-waist species). Zooplankton biomass or abundance time series data from >100 sites world-wide are used to examine the spatial scales of coherent temporal synchrony. If spatially correlated environmental factors (like climate) are important for creating synchrony in fish populations via bottom-up effects (trophic interactions involving fish prey, e.g., zooplankton), then we would expect to observe synchrony in fluctuations of zooplankton biomass/numbers at spatial scales similar to those found for fish species. Zooplankton biomass/abundance have 50% spatial decorrelation scales of ca. 700-1400 km and scales of significant coherence that extend to separation distances of ca. 3000 km. These are also the spatial scales of environmental (sea surface temperature) synchrony from our global analysis. These scales are slightly greater than the 50% decorrelation scales of ca. 150-700 km for recruitment synchrony in Atlantic marine fish and survival and

  20. Distribution and abundance of western gray whales off northeastern Sakhalin Island, Russia, 2001-2003.

    PubMed

    Meier, S K; Yazvenko, S B; Blokhin, S A; Wainwright, P; Maminov, M K; Yakovlev, Y M; Newcomer, M W

    2007-11-01

    In 2001-2003, >60,000 km of aerial surveys and 7,700 km of vessel surveys were conducted during June to November when critically endangered Korean-Okhotsk or western gray whales (Eschrichtius robustus) were present off the northeast coast of Sakhalin Island, Russia. Results of surveys in all years indicated gray whales occurred in predominantly two areas, (1) adjacent to Piltun Bay, and (2) offshore from Chayvo Bay, hereafter referred to as the Piltun and offshore feeding areas. In the Piltun feeding area, the majority of whales were observed in waters shallower than 20 m and were distributed from several hundred meters to approximately 5 km from the shoreline. In the offshore feeding area during all years, the distribution of gray whales extended from southwest to northeast in waters 30-65 m in depth. During all years, the distribution and abundance of whales changed in both the Piltun and offshore feeding areas, and both north-south and inshore-offshore movements were documented within and between feeding seasons. The discovery of a significant number of whales feeding in the offshore area each year was a substantial finding of this study and raises questions regarding western gray whale abundance and population levels, feeding behavior and ecology, and individual site-fidelity. Fluctuations in the number of whales observed within the Piltun and offshore feeding areas and few sightings outside of these two areas indicate that gray whales move between the Piltun and offshore feeding areas during their summer-fall feeding season. Seasonal shifts in the distribution and abundance of gray whales between and within both the Piltun and offshore feeding areas are thought, in part, to be a response to seasonal changes in the distribution and abundance of prey. However, the mechanism driving the movements of whales along the northeast coast of Sakhalin Island is likely very complex and influenced by a multitude of factors. PMID:17703367

  1. Abundance and distribution of feral pigs at Hakalau Forest National Wildlife Refuge, 2010-2013

    USGS Publications Warehouse

    Hess, Steven C.; Leopold, Christina R.; Kendall, Steven J.

    2013-01-01

    The Hakalau Forest Unit of the Big Island National Wildlife Refuge Complex has intensively managed feral pigs (Sus scrofa) and monitored feral pig presence with surveys of all managed areas since 1988. Results of all available data regarding pig management activities through 2004 were compiled and analyzed, but no further analyses had been conducted since then. The objective of this report was to analyze recent feral ungulate surveys at the Hakalau Forest Unit to determine current pig abundance and distribution. Activity indices for feral pigs, consisting of the presence of fresh or intermediate sign at 422 stations, each with approximately 20 sample plots, were compiled for years 2010–2013. A calibrated model based on the number of pigs removed from one management unit and concurrent activity surveys was applied to estimate pig abundance in other management units. Although point estimates appeared to decrease from 489.1 (±105.6) in 2010 to 407.6 (±88.0) in 2013, 95% confidence intervals overlapped, indicating no significant change in pig abundance within all management units. Nonetheless, there were significant declines in pig abundance over the four-year period within management units 1, 6, and 7. Areas where pig abundance remained high include the southern portion of Unit 2. Results of these surveys will be useful for directing management actions towards specific management units.

  2. Distribution, abundance, diversity and habitat associations of fishes across a bioregion experiencing rapid coastal development

    NASA Astrophysics Data System (ADS)

    McLean, Dianne L.; Langlois, Tim J.; Newman, Stephen J.; Holmes, Thomas H.; Birt, Matthew J.; Bornt, Katrina R.; Bond, Todd; Collins, Danielle L.; Evans, Scott N.; Travers, Michael J.; Wakefield, Corey B.; Babcock, Russ C.; Fisher, Rebecca

    2016-09-01

    Knowledge of the factors that influence spatial patterns in fish abundance, distribution and diversity are essential for informing fisheries and conservation management. The present study was conducted in the nearshore Pilbara bioregion of north-western Australia where the dynamic marine environment is characterised by large embayments, numerous islands and islets, coexisting with globally significant petrochemical and mineral industries. Within Western Australia, this nearshore bioregion has high biodiversity and is considered to play an essential role in the recruitment of species of commercial importance. To better inform future investigations into both ecological processes and planning scenarios for management, a rapid assessment of the distribution, abundance and associations with nearshore habitats of fishes across the region was conducted. Baited remote underwater stereo-video systems (stereo-BRUVs) were used to simultaneously sample the fish assemblage and habitat composition. Generalised additive mixed models (GAMMs) were used to determine whether the abundance of fishes were related to habitat and a range of environmental variables (visibility, depth, distance to 30 m and 200 m depth isobars, boat ramps and the nearest large embayment (Exmouth Gulf). A diverse fish assemblage comprising 343 species from 58 families was recorded. The abundance and distribution patterns of fishery-target species and of the five most common and abundant species and families were linked positively with areas of high relief, hard coral cover, reef and macroalgae and negatively with the distance to the nearest oceanic waters (200 m depth isobar). This study provides information that can contribute to future marine spatial planning scenarios for management of the Pilbara using a unique, analytical approach that has broad application in biogeography.

  3. Distribution, abundance, and resting microhabitat of burbot on Julian's Reef, southwestern Lake Michigan

    USGS Publications Warehouse

    Edsall, Thomas A.; Kennedy, Gregory W.; Horns, William H.

    1993-01-01

    We used a remotely operated submersible vehicle equipped with a color video camera to videotape the lake bed and document the distribution and abundance of burbot Lota lota on a 156-hectare portion of Julian's Reef in southwestern Lake Michigan. The substrates and bathymetry of the study area had been mapped recently by side-scan sonar. Burbot density determined from videotapes covering 6,900 m2 of lake bed at depths of 23-41 m averaged 139 individuals/ hectare (range, 0-571/hectare). This density was substantially higher than the highest burbot density (59-95/hectare) reported in the literature. Burbot were present on the lake bed at depths of 23-36 m, but were most abundant near the crest of the reef at 23-28 m, where the water temperature was 8-13°C, their preferred summer temperature range. Substrates in that temperature range on the reef were bedrock, bedrock ridges, and bedrock and rubble. Burbot were most abundant on the bedrock and rubble. Small fish and macroinvertebrates typically eaten by burbot elsewhere in western Lake Michigan were distributed on the reef according to their summer preferred temperatures and were not seen in abundance where burbot density was highest. We saw no lake trout Salvelinus namaycush on Julian's Reef, although large numbers of juvenile lake trout have been stocked there annually and temperatures on the reef were in the preferred summer temperature range for lake trout.

  4. Distribution, abundance, and resting microhabitat of burbot on Julian's Reef, southwestern Lake Michigan

    USGS Publications Warehouse

    Edsall, Thomas A.; Kennedy, Gregory W.; Horns, William H.

    1993-01-01

    We used a remotely operated submersible vehicle equipped with a color video camera to videotape the lake bed and document the distribution and abundance of burbot Lota lotaon a 156-hectare portion of Julian's Reef in southwestern Lake Michigan. The substrates and bathymetry of the study area had been mapped recently by side-scan sonar. Burbot density determined from videotapes covering 6,900 m2 of lake bed at depths of 23–41 m averaged 139 individuals/ hectare (range, 0–571/hectare). This density was substantially higher than the highest burbot density (59–95/hectare) reported in the literature. Burbot were present on the lake bed at depths of 23–36 m, but were most abundant near the crest of the reef at 23–28 m, where the water temperature was 8–13°C, their preferred summer temperature range. Substrates in that temperature range on the reef were bedrock, bedrock ridges, and bedrock and rubble. Burbot were most abundant on the bedrock and rubble. Small fish and macroinvertebrates typically eaten by burbot elsewhere in western Lake Michigan were distributed on the reef according to their summer preferred temperatures and were not seen in abundance where burbot density was highest. We saw no lake trout Salvelinus namaycush on Julian's Reef, although large numbers of juvenile lake trout have been stocked there annually and temperatures on the reef were in the preferred summer temperature range for lake trout.

  5. [Diversity, abundance and distribution of benthic macrofauna on rocky shores from North Sucre State, Venezuela].

    PubMed

    Fernandez, Johanna; Jiménez, Mayré; Allen, Thays

    2014-09-01

    The rocky intertidal zone is among the most extreme physical environments on Earth. Organisms living in this area are constantly stricken by physico-chemical and biological factors. Due to the ecological importance of these areas, we studied the diversity, abundance and distribution of the rocky coastline benthic macrofauna, from the North coast of Sucre State, Venezuela. We performed bimonthly samplings from November 2008 to September 2009. The collection of biological material in the littoral zone (supra, mid and infralittoral) was done manually with a grid of 0.25m2. Organisms were preserved in 10% formalin for later identification and analysis (ecological parameters and Kruskal-Wallis test to the abundance and diversity). We found a total 19,020 organisms (86 spp.), in 8 phyla, 45 families and 47 genera. Mollusks were the most abundant and diverse (58 spp.), followed by arthropods (12 spp.), annelids (7 spp.), echinoderms (5 spp.), and the less represented cnidarians, sipunculids, nemertinids and urochordates (1 sp.). The zonation found coincided with the universal scheme of zonation. The towns of Rio Boca and Rio Caribe presented the highest values of ecological parameters, and the lowest were found in Playa Grande. Statistical significant differences were found in the abundance and diversity of macrofauna among the three zones. The little information on the composition and distribution of macrobenthic rocky coastline, prevents a better comparison, however the results contribute to the knowledge of the marine biodiversity in this region. PMID:25412527

  6. The distribution, relative abundance, and seasonal phenology of Ceratitis capitata, Ceratitis rosa, and Ceratitis cosyra (Diptera: Tephritidae) in South Africa.

    PubMed

    De Villiers, Marelize; Manrakhan, Aruna; Addison, Pia; Hattingh, Vaughan

    2013-10-01

    Ceratitis capitata (Wiedemann), Ceratitis rosa Karsch, and Ceratitis cosyra (Walker) are fruit fly species (Diptera: Tephritidae) of economic importance in South Africa. These pests cause direct damage to a number of commercially produced fruit and are of phytosanitary concern. A study was conducted to determine the distribution, relative abundance, and seasonal occurrence of the three species in different climatic regions of South Africa. The relative abundance and seasonal phenology of C. capitata and C. rosa were also compared between production areas and home gardens in Stellenbosch, Western Cape. Yellow bucket traps baited with Biolure were used to trap the flies over a 2-yr period in the different sampling areas. Different fruit types were sampled in Stellenbosch to determine fruit fly infestation. C. capitata was found to have a widespread distribution in South Africa, whereas C. rosa were absent from or only present in low numbers in the drier regions. C. cosyra was restricted to the North East and East coast, following a similar pattern to the distribution of marula, Sclerocarrya birrea, an important wild host. Fruit in home gardens provided a breeding ground for C. capitata and C. rosa and a source for infestation of orchards when fruit started to mature, highlighting the need for an area-wide strategy for the control of fruit flies. PMID:24331596

  7. Species abundance distributions, statistical mechanics and the priors of MaxEnt.

    PubMed

    Bowler, M G

    2014-03-01

    The methods of Maximum Entropy have been deployed for some years to address the problem of species abundance distributions. In this approach, it is important to identify the correct weighting factors, or priors, to be applied before maximising the entropy function subject to constraints. The forms of such priors depend not only on the exact problem but can also depend on the way it is set up; priors are determined by the underlying dynamics of the complex system under consideration. The problem is one of statistical mechanics and it is the properties of the system that yield the correct MaxEnt priors, appropriate to the way the problem is framed. Here I calculate, in several different ways, the species abundance distribution resulting when individuals in a community are born and die independently. In the usual formulation the prior distribution for the number of species over the number of individuals is 1/n; the problem can be reformulated in terms of the distribution of individuals over species classes, with a uniform prior. Results are obtained using master equations for the dynamics and separately through the combinatoric methods of elementary statistical mechanics; the MaxEnt priors then emerge a posteriori. The first object is to establish the log series species abundance distribution as the outcome of per capita guild dynamics. The second is to clarify the true nature and origin of priors in the language of MaxEnt. Finally, I consider how it may come about that the distribution is similar to log series in the event that filled niches dominate species abundance. For the general ecologist, there are two messages. First, that species abundance distributions are determined largely by population sorting through fractional processes (resulting in the 1/n factor) and secondly that useful information is likely to be found only in departures from the log series. For the MaxEnt practitioner, the message is that the prior with respect to which the entropy is to be

  8. A MODEST MODEL EXPLAINS THE DISTRIBUTION AND ABUNDANCE OF BORRELIA BURGDORFERI STRAINS

    PubMed Central

    BRISSON, DUSTIN; DYKHUIZEN, DANIEL E.

    2006-01-01

    The distribution and abundance of Borrelia burgdorferi, including human Lyme disease strains, is a function of its interactions with vertebrate species. We present a mathematical model describing important ecologic interactions affecting the distribution and abundance of B. burgdorferi strains, marked by the allele at the outer surface protein C locus, in Ixodes scapularis ticks, the principal vector. The frequency of each strain in ticks can be explained by the vertebrate species composition, the density of each vertebrate species, the number of ticks that feed on individuals of each species, and the rate at which those ticks acquire different strain. The model results are consistent with empirical data collected in a major Lyme disease focus in New England. An applicable extension of these results would be to predict the proportion of ticks carrying human infectious strains of B. burgdorferi from disease host densities and thus predict the local risk of contracting Lyme disease. PMID:16606995

  9. Distribution of known macrozooplankton abundance and biomass in the global ocean

    NASA Astrophysics Data System (ADS)

    Moriarty, R.; Buitenhuis, E. T.; Le Quéré, C.; Gosselin, M.-P.

    2013-07-01

    Macrozooplankton are an important link between higher and lower trophic levels in the oceans. They serve as the primary food for fish, reptiles, birds and mammals in some regions, and play a role in the export of carbon from the surface to the intermediate and deep ocean. Little, however, is known of their global distribution and biomass. Here we compiled a dataset of macrozooplankton abundance and biomass observations for the global ocean from a collection of four datasets. We harmonise the data to common units, calculate additional carbon biomass where possible, and bin the dataset in a global 1 × 1 degree grid. This dataset is part of a wider effort to provide a global picture of carbon biomass data for key plankton functional types, in particular to support the development of marine ecosystem models. Over 387 700 abundance data and 1330 carbon biomass data have been collected from pre-existing datasets. A further 34 938 abundance data were converted to carbon biomass data using species-specific length frequencies or using species-specific abundance to carbon biomass data. Depth-integrated values are used to calculate known epipelagic macrozooplankton biomass concentrations and global biomass. Global macrozooplankton biomass, to a depth of 350 m, has a mean of 8.4 μg C L-1, median of 0.2 μg C L-1 and a standard deviation of 63.5 μg C L-1. The global annual average estimate of macrozooplankton biomass in the top 350 m, based on the median value, is 0.02 Pg C. There are, however, limitations on the dataset; abundance observations have good coverage except in the South Pacific mid-latitudes, but biomass observation coverage is only good at high latitudes. Biomass is restricted to data that is originally given in carbon or to data that can be converted from abundance to carbon. Carbon conversions from abundance are restricted by the lack of information on the size of the organism and/or the absence of taxonomic information. Distribution patterns of global

  10. Compositional bias is a major determinant of the distribution pattern and abundance of palindromes in Drosophila melanogaster.

    PubMed

    Liu, Guoqing; Liu, Jia; Zhang, Bingjie

    2012-10-01

    Palindromic sequences are important DNA motifs related to gene regulation, DNA replication and recombination, and thus, investigating the evolutionary forces shaping the distribution pattern and abundance of palindromes in the genome is substantially important. In this article, we analyzed the abundance of palindromes in the genome, and then explored the possible effects of several genomic factors on the palindrome distribution and abundance in Drosophila melanogaster. Our results show that the palindrome abundance in D. melanogaster deviates from random expectation and the uneven distribution of palindromes across the genome is associated with local GC content, recombination rate, and coding exon density. Our data suggest that base composition is the major determinant of the distribution pattern and abundance of palindromes and the correlation between palindrome density and recombination is a side-product of the effect of compositional bias on the palindrome abundance. PMID:23138634

  11. Lutzomyia longipalpis Presence and Abundance Distribution at Different Micro-spatial Scales in an Urban Scenario

    PubMed Central

    Santini, María Soledad; Utgés, María Eugenia; Berrozpe, Pablo; Manteca Acosta, Mariana; Casas, Natalia; Heuer, Paola; Salomón, O. Daniel

    2015-01-01

    The principal objective of this study was to assess a modeling approach to Lu. longipalpis distribution in an urban scenario, discriminating micro-scale landscape variables at microhabitat and macrohabitat scales and the presence from the abundance of the vector. For this objective, we studied vectors and domestic reservoirs and evaluated different environmental variables simultaneously, so we constructed a set of 13 models to account for micro-habitats, macro-habitats and mixed-habitats. We captured a total of 853 sandflies, of which 98.35% were Lu. longipalpis. We sampled a total of 197 dogs; 177 of which were associated with households where insects were sampled. Positive rK39 dogs represented 16.75% of the total, of which 47% were asymptomatic. Distance to the border of the city and high to medium density vegetation cover ended to be the explanatory variables, all positive, for the presence of sandflies in the city. All variables in the abundance model ended to be explanatory, trees around the trap, distance to the stream and its quadratic, being the last one the only one with negative coefficient indicating that the maximum abundance was associated with medium values of distance to the stream. The spatial distribution of dogs infected with L. infantum showed a heterogeneous pattern throughout the city; however, we could not confirm an association of the distribution with the variables assessed. In relation to Lu. longipalpis distribution, the strategy to discriminate the micro-spatial scales at which the environmental variables were recorded allowed us to associate presence with macrohabitat variables and abundance with microhabitat and macrohabitat variables. Based on the variables associated with Lu. longipalpis, the model will be validated in other cities and environmental surveillance, and control interventions will be proposed and evaluated in the microscale level and integrated with socio-cultural approaches and programmatic and village (mesoscale

  12. Lutzomyia longipalpis Presence and Abundance Distribution at Different Micro-spatial Scales in an Urban Scenario.

    PubMed

    Santini, María Soledad; Utgés, María Eugenia; Berrozpe, Pablo; Manteca Acosta, Mariana; Casas, Natalia; Heuer, Paola; Salomón, O Daniel

    2015-01-01

    The principal objective of this study was to assess a modeling approach to Lu. longipalpis distribution in an urban scenario, discriminating micro-scale landscape variables at microhabitat and macrohabitat scales and the presence from the abundance of the vector. For this objective, we studied vectors and domestic reservoirs and evaluated different environmental variables simultaneously, so we constructed a set of 13 models to account for micro-habitats, macro-habitats and mixed-habitats. We captured a total of 853 sandflies, of which 98.35% were Lu. longipalpis. We sampled a total of 197 dogs; 177 of which were associated with households where insects were sampled. Positive rK39 dogs represented 16.75% of the total, of which 47% were asymptomatic. Distance to the border of the city and high to medium density vegetation cover ended to be the explanatory variables, all positive, for the presence of sandflies in the city. All variables in the abundance model ended to be explanatory, trees around the trap, distance to the stream and its quadratic, being the last one the only one with negative coefficient indicating that the maximum abundance was associated with medium values of distance to the stream. The spatial distribution of dogs infected with L. infantum showed a heterogeneous pattern throughout the city; however, we could not confirm an association of the distribution with the variables assessed. In relation to Lu. longipalpis distribution, the strategy to discriminate the micro-spatial scales at which the environmental variables were recorded allowed us to associate presence with macrohabitat variables and abundance with microhabitat and macrohabitat variables. Based on the variables associated with Lu. longipalpis, the model will be validated in other cities and environmental surveillance, and control interventions will be proposed and evaluated in the microscale level and integrated with socio-cultural approaches and programmatic and village (mesoscale

  13. Estimating the abundance of clustered animal population by using adaptive cluster sampling and negative binomial distribution

    NASA Astrophysics Data System (ADS)

    Bo, Yizhou; Shifa, Naima

    2013-09-01

    An estimator for finding the abundance of a rare, clustered and mobile population has been introduced. This model is based on adaptive cluster sampling (ACS) to identify the location of the population and negative binomial distribution to estimate the total in each site. To identify the location of the population we consider both sampling with replacement (WR) and sampling without replacement (WOR). Some mathematical properties of the model are also developed.

  14. Abundance and Distribution Characteristics of Microplastics in Surface Seawaters of the Incheon/Kyeonggi Coastal Region.

    PubMed

    Chae, Doo-Hyeon; Kim, In-Sung; Kim, Seung-Kyu; Song, Young Kyoung; Shim, Won Joon

    2015-10-01

    Microplastics in marine environments are of emerging concern due to their widespread distribution, their ingestion by various marine organisms, and their roles as a source and transfer vector of toxic chemicals. However, our understanding of their abundance and distribution characteristics in surface seawater (SSW) remains limited. We investigated microplastics in the surface microlayer (SML) and the SSW at 12 stations near-shore and offshore of the Korean west coast, Incheon/Kyeonggi region. Variation between stations, sampling media, and sampling methods were compared based on abundances, size distribution, and composition profiles of microsized synthetic polymer particles. The abundance of microplastics was greater in the SML (152,688 ± 92,384 particles/m(3)) than in SSW and showed a significant difference based on the sampling method for SSWs collected using a hand net (1602 ± 1274 particles/m(3)) and a zooplankton trawl net (0.19 ± 0.14 particles/m(3)). Ship paint particles (mostly alkyd resin polymer) accounted for the majority of microplastics detected in both SML and SSWs, and increased levels were observed around the voyage routes of large vessels. This indicates that polymers with marine-based origins become an important contributor to microplastics in coastal SSWs of this coastal region. PMID:26135299

  15. Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes

    SciTech Connect

    Aziz, Ramy K.; Dwivedi, Bhakti; Akhter, Sajia; Breitbart, Mya; Edwards, Robert A.

    2015-05-08

    Phages are the most abundant biological entities on Earth and play major ecological roles, yet the current sequenced phage genomes do not adequately represent their diversity, and little is known about the abundance and distribution of these sequenced genomes in nature. Although the study of phage ecology has benefited tremendously from the emergence of metagenomic sequencing, a systematic survey of phage genes and genomes in various ecosystems is still lacking, and fundamental questions about phage biology, lifestyle, and ecology remain unanswered. To address these questions and improve comparative analysis of phages in different metagenomes, we screened a core set of publicly available metagenomic samples for sequences related to completely sequenced phages using the web tool, Phage Eco-Locator. We then adopted and deployed an array of mathematical and statistical metrics for a multidimensional estimation of the abundance and distribution of phage genes and genomes in various ecosystems. Experiments using those metrics individually showed their usefulness in emphasizing the pervasive, yet uneven, distribution of known phage sequences in environmental metagenomes. Using these metrics in combination allowed us to resolve phage genomes into clusters that correlated with their genotypes and taxonomic classes as well as their ecological properties. By adding this set of metrics to current metaviromic analysis pipelines, where they can provide insight regarding phage mosaicism, habitat specificity, and evolution.

  16. Vertical distribution and diel patterns of zooplankton abundance and biomass at Conch Reef, Florida Keys (USA).

    PubMed

    Heidelberg, Karla B; O'Neil, Keri L; Bythell, John C; Sebens, Kenneth P

    2010-01-01

    Zooplankton play an important role in the trophic dynamics of coral reef ecosystems. Detailed vertical and temporal distribution and biomass of zooplankton were evaluated at four heights off the bottom and at six times throughout the diel cycle over a coral reef in the Florida Keys (USA). Zooplankton abundance averaged 4396 +/- 1949 SD individuals m(-3), but temporal and spatial distributions varied for individual zooplankton taxa by time of day and by height off the bottom. Copepods comprised 93-96% of the abundance in the samples. Taxon-based zooplankton CHN values paired with abundance data were used to estimate biomass. Average daily biomass ranged from 3.1 to 21.4 mg C m(-3) and differed by both height off the bottom and by time of day. While copepods were the numerically dominant organisms, their contribution to biomass was only 35% of the total zooplankton biomass. Our findings provide important support for the new emerging paradigm of how zooplankton are distributed over reefs. PMID:20046854

  17. Vertical distribution and diel patterns of zooplankton abundance and biomass at Conch Reef, Florida Keys (USA)

    PubMed Central

    Heidelberg, Karla B.; O'Neil, Keri L.; Bythell, John C.; Sebens, Kenneth P.

    2010-01-01

    Zooplankton play an important role in the trophic dynamics of coral reef ecosystems. Detailed vertical and temporal distribution and biomass of zooplankton were evaluated at four heights off the bottom and at six times throughout the diel cycle over a coral reef in the Florida Keys (USA). Zooplankton abundance averaged 4396 ± 1949 SD individuals m−3, but temporal and spatial distributions varied for individual zooplankton taxa by time of day and by height off the bottom. Copepods comprised 93–96% of the abundance in the samples. Taxon-based zooplankton CHN values paired with abundance data were used to estimate biomass. Average daily biomass ranged from 3.1 to 21.4 mg C m−3 and differed by both height off the bottom and by time of day. While copepods were the numerically dominant organisms, their contribution to biomass was only 35% of the total zooplankton biomass. Our findings provide important support for the new emerging paradigm of how zooplankton are distributed over reefs. PMID:20046854

  18. Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes

    PubMed Central

    Aziz, Ramy K.; Dwivedi, Bhakti; Akhter, Sajia; Breitbart, Mya; Edwards, Robert A.

    2015-01-01

    Phages are the most abundant biological entities on Earth and play major ecological roles, yet the current sequenced phage genomes do not adequately represent their diversity, and little is known about the abundance and distribution of these sequenced genomes in nature. Although the study of phage ecology has benefited tremendously from the emergence of metagenomic sequencing, a systematic survey of phage genes and genomes in various ecosystems is still lacking, and fundamental questions about phage biology, lifestyle, and ecology remain unanswered. To address these questions and improve comparative analysis of phages in different metagenomes, we screened a core set of publicly available metagenomic samples for sequences related to completely sequenced phages using the web tool, Phage Eco-Locator. We then adopted and deployed an array of mathematical and statistical metrics for a multidimensional estimation of the abundance and distribution of phage genes and genomes in various ecosystems. Experiments using those metrics individually showed their usefulness in emphasizing the pervasive, yet uneven, distribution of known phage sequences in environmental metagenomes. Using these metrics in combination allowed us to resolve phage genomes into clusters that correlated with their genotypes and taxonomic classes as well as their ecological properties. We propose adding this set of metrics to current metaviromic analysis pipelines, where they can provide insight regarding phage mosaicism, habitat specificity, and evolution. PMID:26005436

  19. Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes

    DOE PAGESBeta

    Aziz, Ramy K.; Dwivedi, Bhakti; Akhter, Sajia; Breitbart, Mya; Edwards, Robert A.

    2015-05-08

    Phages are the most abundant biological entities on Earth and play major ecological roles, yet the current sequenced phage genomes do not adequately represent their diversity, and little is known about the abundance and distribution of these sequenced genomes in nature. Although the study of phage ecology has benefited tremendously from the emergence of metagenomic sequencing, a systematic survey of phage genes and genomes in various ecosystems is still lacking, and fundamental questions about phage biology, lifestyle, and ecology remain unanswered. To address these questions and improve comparative analysis of phages in different metagenomes, we screened a core set ofmore » publicly available metagenomic samples for sequences related to completely sequenced phages using the web tool, Phage Eco-Locator. We then adopted and deployed an array of mathematical and statistical metrics for a multidimensional estimation of the abundance and distribution of phage genes and genomes in various ecosystems. Experiments using those metrics individually showed their usefulness in emphasizing the pervasive, yet uneven, distribution of known phage sequences in environmental metagenomes. Using these metrics in combination allowed us to resolve phage genomes into clusters that correlated with their genotypes and taxonomic classes as well as their ecological properties. By adding this set of metrics to current metaviromic analysis pipelines, where they can provide insight regarding phage mosaicism, habitat specificity, and evolution.« less

  20. Changes in the distribution and abundance of albatrosses in the eastern Bering Sea: 1975-2010

    NASA Astrophysics Data System (ADS)

    Kuletz, Kathy J.; Renner, Martin; Labunski, Elizabeth A.; Hunt, George L.

    2014-11-01

    A number of marine species are showing poleward shifts in their distributions in response to climate warming. Three albatross species frequent the Bering Sea, the Laysan (Phoebastria immutabilis), the black-footed (Phoebastria nigripes), and the endangered short-tailed albatross (Phoebastria albatrus). To determine if albatrosses changed their distribution or abundance in the eastern Bering Sea between 1975 and 2010, we examined at-sea survey data using the North Pacific Pelagic Seabird Database. Within our study area, all three species of albatross occurred most frequently in the waters of the Aleutian Islands. In the eastern Bering Sea, all three species were most abundant near the shelf break, and in particular in the vicinity of the major submarine canyons in the shelf slope. Starting in the 1990s, population densities increased for all three albatross species, with a marked increase in the 2000s. In the 2000s, there was also an increase in the frequency at which albatrosses were recorded in the central and northern Bering Sea. Both black-footed and short-tailed albatrosses shifted the centers of their Bering Sea distributions northward. The Laysan albatross center of distribution shifted southward due to increased numbers along the southern shelf break, but densities also increased northward. We suggest that the observed changes in distribution and abundance of the three albatross species in the eastern Bering Sea may have been responses to an increase in the availability of squid, their primary prey, there. Additionally, the expansion of the distribution of the short-tailed albatross in the eastern Bering Sea may represent the reclamation of its previous range, now that the population is beginning to recover from near extinction caused by over harvesting. We suggest that predicted increases in ocean temperatures and northward movement of prey could result in albatrosses and other marine apex predators foraging farther north along the Bering Sea shelf and

  1. Comparison of five modelling techniques to predict the spatial distribution and abundance of seabirds

    USGS Publications Warehouse

    O'Connell, Allan F.; Gardner, Beth; Oppel, Steffen; Meirinho, Ana; Ramírez, Iván; Miller, Peter I.; Louzao, Maite

    2012-01-01

    Knowledge about the spatial distribution of seabirds at sea is important for conservation. During marine conservation planning, logistical constraints preclude seabird surveys covering the complete area of interest and spatial distribution of seabirds is frequently inferred from predictive statistical models. Increasingly complex models are available to relate the distribution and abundance of pelagic seabirds to environmental variables, but a comparison of their usefulness for delineating protected areas for seabirds is lacking. Here we compare the performance of five modelling techniques (generalised linear models, generalised additive models, Random Forest, boosted regression trees, and maximum entropy) to predict the distribution of Balearic Shearwaters (Puffinus mauretanicus) along the coast of the western Iberian Peninsula. We used ship transect data from 2004 to 2009 and 13 environmental variables to predict occurrence and density, and evaluated predictive performance of all models using spatially segregated test data. Predicted distribution varied among the different models, although predictive performance varied little. An ensemble prediction that combined results from all five techniques was robust and confirmed the existence of marine important bird areas for Balearic Shearwaters in Portugal and Spain. Our predictions suggested additional areas that would be of high priority for conservation and could be proposed as protected areas. Abundance data were extremely difficult to predict, and none of five modelling techniques provided a reliable prediction of spatial patterns. We advocate the use of ensemble modelling that combines the output of several methods to predict the spatial distribution of seabirds, and use these predictions to target separate surveys assessing the abundance of seabirds in areas of regular use.

  2. Predicting probability of occurrence and factors affecting distribution and abundance of three Ozark endemic crayfish species at multiple spatial scales

    USGS Publications Warehouse

    Nolen, Matthew S.; Magoulick, Daniel D.; DiStefano, Robert J.; Imhoff, Emily M.; Wagner, Brian K.

    2014-01-01

    We found that a range of environmental variables were important in predicting crayfish distribution and abundance at multiple spatial scales and their importance was species-, response variable- and scale dependent. We would encourage others to examine the influence of spatial scale on species distribution and abundance patterns.

  3. Archaeological data provide alternative hypotheses on Pacific herring (Clupea pallasii) distribution, abundance, and variability

    PubMed Central

    McKechnie, Iain; Lepofsky, Dana; Moss, Madonna L.; Butler, Virginia L.; Orchard, Trevor J.; Coupland, Gary; Foster, Fredrick; Caldwell, Megan; Lertzman, Ken

    2014-01-01

    Pacific herring (Clupea pallasii), a foundation of coastal social-ecological systems, is in decline throughout much of its range. We assembled data on fish bones from 171 archaeological sites from Alaska, British Columbia, and Washington to provide proxy measures of past herring distribution and abundance. The dataset represents 435,777 fish bones, dating throughout the Holocene, but primarily to the last 2,500 y. Herring is the single-most ubiquitous fish taxon (99% ubiquity) and among the two most abundant taxa in 80% of individual assemblages. Herring bones are archaeologically abundant in all regions, but are superabundant in the northern Salish Sea and southwestern Vancouver Island areas. Analyses of temporal variability in 50 well-sampled sites reveals that herring exhibits consistently high abundance (>20% of fish bones) and consistently low variance (<10%) within the majority of sites (88% and 96%, respectively). We pose three alternative hypotheses to account for the disjunction between modern and archaeological herring populations. We reject the first hypothesis that the archaeological data overestimate past abundance and underestimate past variability. We are unable to distinguish between the second two hypotheses, which both assert that the archaeological data reflect a higher mean abundance of herring in the past, but differ in whether variability was similar to or less than that observed recently. In either case, sufficient herring was consistently available to meet the needs of harvesters, even if variability is damped in the archaeological record. These results provide baseline information prior to herring depletion and can inform modern management. PMID:24550468

  4. Using species abundance distribution models and diversity indices for biogeographical analyses

    NASA Astrophysics Data System (ADS)

    Fattorini, Simone; Rigal, François; Cardoso, Pedro; Borges, Paulo A. V.

    2016-01-01

    We examine whether Species Abundance Distribution models (SADs) and diversity indices can describe how species colonization status influences species community assembly on oceanic islands. Our hypothesis is that, because of the lack of source-sink dynamics at the archipelago scale, Single Island Endemics (SIEs), i.e. endemic species restricted to only one island, should be represented by few rare species and consequently have abundance patterns that differ from those of more widespread species. To test our hypothesis, we used arthropod data from the Azorean archipelago (North Atlantic). We divided the species into three colonization categories: SIEs, archipelagic endemics (AZEs, present in at least two islands) and native non-endemics (NATs). For each category, we modelled rank-abundance plots using both the geometric series and the Gambin model, a measure of distributional amplitude. We also calculated Shannon entropy and Buzas and Gibson's evenness. We show that the slopes of the regression lines modelling SADs were significantly higher for SIEs, which indicates a relative predominance of a few highly abundant species and a lack of rare species, which also depresses diversity indices. This may be a consequence of two factors: (i) some forest specialist SIEs may be at advantage over other, less adapted species; (ii) the entire populations of SIEs are by definition concentrated on a single island, without possibility for inter-island source-sink dynamics; hence all populations must have a minimum number of individuals to survive natural, often unpredictable, fluctuations. These findings are supported by higher values of the α parameter of the Gambin mode for SIEs. In contrast, AZEs and NATs had lower regression slopes, lower α but higher diversity indices, resulting from their widespread distribution over several islands. We conclude that these differences in the SAD models and diversity indices demonstrate that the study of these metrics is useful for

  5. Distribution of viral abundance in the reef environment of Key Largo, Florida.

    PubMed

    Paul, J H; Rose, J B; Jiang, S C; Kellogg, C A; Dickson, L

    1993-03-01

    The distribution of viral and microbial abundance in the Key Largo, Fla., reef environment was measured. Viral abundance was measured by transmission electron microscope direct counts and plaque titer on specific bacterial hosts in water and sediment samples from Florida Bay (Blackwater Sound) and along a transect from Key Largo to the outer edge of the reef tract in Key Largo Sanctuary. Water column viral direct counts were highest in Blackwater Sound of Florida Bay (1.2 x 10(7) viruses per ml), decreased to the shelf break (1.7 x 10(6) viruses per ml), and were inversely correlated with salinity (r = -0.97). Viral direct counts in sediment samples ranged from 1.35 x 10(8) to 5.3 x 10(8)/cm(3) of sediment and averaged nearly 2 orders of magnitude greater than counts in the water column. Viral direct counts (both sediment and water column measurements) exceeded plaque titers on marine bacterial hosts (Vibrio natriegens and others) by 7 to 8 orders of magnitude. Water column viral abundance did not correlate with bacterial direct counts or chlorophyll a measurements, and sediment viral parameters did not correlate with water column microbial, viral, or salinity data. Coliphage, which are indicators of fecal pollution, were detected in two water column samples and most sediment samples, yet their concentrations were relatively low (<2 to 15/liter for water column samples, and <2 to 108/cm(3) of sediment). Our findings indicate that viruses are abundant in the Key Largo environment, particularly on the Florida Bay side of Key Largo, and that processes governing their distribution in the water column (i.e., salinity and freshwater input) are independent of those governing their distribution in the sediment environment. PMID:8480998

  6. Large-scale geographic variation in distribution and abundance of Australian deep-water kelp forests.

    PubMed

    Marzinelli, Ezequiel M; Williams, Stefan B; Babcock, Russell C; Barrett, Neville S; Johnson, Craig R; Jordan, Alan; Kendrick, Gary A; Pizarro, Oscar R; Smale, Dan A; Steinberg, Peter D

    2015-01-01

    Despite the significance of marine habitat-forming organisms, little is known about their large-scale distribution and abundance in deeper waters, where they are difficult to access. Such information is necessary to develop sound conservation and management strategies. Kelps are main habitat-formers in temperate reefs worldwide; however, these habitats are highly sensitive to environmental change. The kelp Ecklonia radiate is the major habitat-forming organism on subtidal reefs in temperate Australia. Here, we provide large-scale ecological data encompassing the latitudinal distribution along the continent of these kelp forests, which is a necessary first step towards quantitative inferences about the effects of climatic change and other stressors on these valuable habitats. We used the Autonomous Underwater Vehicle (AUV) facility of Australia's Integrated Marine Observing System (IMOS) to survey 157,000 m2 of seabed, of which ca 13,000 m2 were used to quantify kelp covers at multiple spatial scales (10-100 m to 100-1,000 km) and depths (15-60 m) across several regions ca 2-6° latitude apart along the East and West coast of Australia. We investigated the large-scale geographic variation in distribution and abundance of deep-water kelp (>15 m depth) and their relationships with physical variables. Kelp cover generally increased with latitude despite great variability at smaller spatial scales. Maximum depth of kelp occurrence was 40-50 m. Kelp latitudinal distribution along the continent was most strongly related to water temperature and substratum availability. This extensive survey data, coupled with ongoing AUV missions, will allow for the detection of long-term shifts in the distribution and abundance of habitat-forming kelp and the organisms they support on a continental scale, and provide information necessary for successful implementation and management of conservation reserves. PMID:25693066

  7. Large-Scale Geographic Variation in Distribution and Abundance of Australian Deep-Water Kelp Forests

    PubMed Central

    Marzinelli, Ezequiel M.; Williams, Stefan B.; Babcock, Russell C.; Barrett, Neville S.; Johnson, Craig R.; Jordan, Alan; Kendrick, Gary A.; Pizarro, Oscar R.; Smale, Dan A.; Steinberg, Peter D.

    2015-01-01

    Despite the significance of marine habitat-forming organisms, little is known about their large-scale distribution and abundance in deeper waters, where they are difficult to access. Such information is necessary to develop sound conservation and management strategies. Kelps are main habitat-formers in temperate reefs worldwide; however, these habitats are highly sensitive to environmental change. The kelp Ecklonia radiate is the major habitat-forming organism on subtidal reefs in temperate Australia. Here, we provide large-scale ecological data encompassing the latitudinal distribution along the continent of these kelp forests, which is a necessary first step towards quantitative inferences about the effects of climatic change and other stressors on these valuable habitats. We used the Autonomous Underwater Vehicle (AUV) facility of Australia’s Integrated Marine Observing System (IMOS) to survey 157,000 m2 of seabed, of which ca 13,000 m2 were used to quantify kelp covers at multiple spatial scales (10–100 m to 100–1,000 km) and depths (15–60 m) across several regions ca 2–6° latitude apart along the East and West coast of Australia. We investigated the large-scale geographic variation in distribution and abundance of deep-water kelp (>15 m depth) and their relationships with physical variables. Kelp cover generally increased with latitude despite great variability at smaller spatial scales. Maximum depth of kelp occurrence was 40–50 m. Kelp latitudinal distribution along the continent was most strongly related to water temperature and substratum availability. This extensive survey data, coupled with ongoing AUV missions, will allow for the detection of long-term shifts in the distribution and abundance of habitat-forming kelp and the organisms they support on a continental scale, and provide information necessary for successful implementation and management of conservation reserves. PMID:25693066

  8. Distribution of known macrozooplankton abundance and biomass in the global ocean

    NASA Astrophysics Data System (ADS)

    Moriarty, R.; Buitenhuis, E. T.; Le Quéré, C.; Gosselin, M.-P.

    2012-04-01

    Macrozooplankton are an important link between higher and lower trophic levels in the oceans. They serve as the primary food for fish, reptiles, birds and mammals in some regions, and play a role in the export of carbon from the surface to the intermediate and deep ocean. Little, however, is known of their global distribution and biomass. Here we compiled a dataset of macrozooplankton abundance and biomass observations for the global ocean from a collection of four datasets. We harmonise the data to common units, calculate additional carbon biomass where possible, and bin the dataset in a global 1 × 1 degree grid. This dataset is part of a wider effort to provide a global picture of carbon biomass data for key plankton functional types, in particular to support the development of marine ecosystem models. Over 387 700 abundance data and 1330 carbon biomass data have been collected from pre-existing datasets. A further 34 938 abundance data were converted to carbon biomass data using species-specific length frequencies or using species-specific abundance to carbon biomass data. Depth-integrated values are used to calculate known epipelagic macrozooplankton biomass concentrations and global biomass. Global macrozooplankton biomass has a mean of 8.4 μg C l-1, median of 0.15 μg C l-1 and a standard deviation of 63.46 μg C l-1. The global annual average estimate of epipelagic macrozooplankton, based on the median value, is 0.02 Pg C. Biomass is highest in the tropics, decreasing in the sub-tropics and increasing slightly towards the poles. There are, however, limitations on the dataset; abundance observations have good coverage except in the South Pacific mid latitudes, but biomass observation coverage is only good at high latitudes. Biomass is restricted to data that is originally given in carbon or to data that can be converted from abundance to carbon. Carbon conversions from abundance are restricted in the most part by the lack of information on the size of the

  9. Cosmo-chronometry and Elemental Abundance Distribution of the Ancient Star HE1523-0901

    NASA Astrophysics Data System (ADS)

    Frebel, Anna

    2009-07-01

    We propose to obtain near-UV HST/STIS spectroscopy of the extremely metal-poor, highly r-process-enhanced halo star HE 1523-0901, in order to produce the most complete abundance distribution of the heaviest stable elements, including platinum, osmium, and lead. These HST abundance data will then be used to estimate the initial abundances of the long-lived radioactive elements thorium and uranium, and by comparison with their observed abundances, enable an accurate age determination of this ancient star. The use of radioactive chronometers in stars provides an independent lower limit on the age of the Galaxy, which can be compared with alternative limits set by globular clusters and by analysis from WMAP. Our proposed observations of HE1523-0901 will also provide significant new information about the early chemical history of the Galaxy, specifically, the nature of the first generations of stars and the types of nucleosynthetic processes that occurred at the onset of Galactic chemical evolution.

  10. Effect of Habitat Complexity on Richness, Abundance and Distributional Pattern of Forest Birds

    NASA Astrophysics Data System (ADS)

    Ghadiri Khanaposhtani, Maryam; Kaboli, Mohammad; Karami, Mahmoud; Etemad, Vahid

    2012-08-01

    Structurally complex forests provide more diverse conditions in comparison to homogenous forests because of greater variety of microhabitats and trees. This study assesses the association of bird species richness, abundance, and distributional pattern with habitat complexity (HC) in Kheyrud Forest in the north of Iran. Birds were surveyed during spring 2009 by 100 point counts. In each point count six habitat features related to the index of HC were computed and scored from 0 to 3. Then the scores were summed and divided into two groups of low and high complexity, HC ≤ 6 and HC > 6, respectively. To compare bird richness and abundance in different HCs, a two sample t-test was used. Presence and absence of bird species at each plot as a dependent variable were compared with the vegetation characteristics as an independent variable by means of the Canonical Correspondence Analysis. The results revealed bird species richness and abundance were significantly higher in more complex habitats. Bird species can be divided into two groups, the first group including species which associated with late successional stages and the second group, species belonging to early successional stages. Numbers of birds belonging to the first group declined in less complex forests, whereas the numbers of birds belonging to the second group increased. At the stand scale, our results reveal that bird abundance and richness are strongly associated with the complexity of vegetation structure in the study area.

  11. Distribution and abundance of caddisflies (Trichoptera) in the St. Clair-Detroit River system

    USGS Publications Warehouse

    Davis, Bruce M.; Hudson, Patrick L.; Armitage, Brian J.

    1991-01-01

    Abundance and distribution patterns of the caddisflies of the St. Clair-Detroit River system were investigated in 1983–84. Collections of both adults and larvae yielded 70 species representing 34 genera and 12 families. Leptoceridae and Hydroptilidae were the most common families and Ceraclea the most common genus in number of species. This study adds 21 species to the Michigan record. The hydropsychidsCheumatopsyche (81, 63, 105 m−2; log-transformed values for mean and lower and upper 95% C.L.) and Hydropsyche (70, 57, 87 m−2) were the most abundant genera collected as larvae in the St. Clair and Detroit rivers, while Oecetis (41, 35, 47 m−2) was the most abundant in Lake St. Clair. Larval densities of caddisflies in the Detroit River were about twice those in the St. Clair River, but the number of genera collected in each river was about equal (22 vs. 23). Larval abundances were higher in October than May because most genera had substantial overwinter population declines. Low densities and species richness in some areas of the St. Clair-Detroit River system may reflect in part continued water quality problems, but community structure has markedly improved and representation of pollution-sensitive organisms has increased over a 12–15 year period.

  12. At-sea distribution and abundance of seabirds off southern California: A 20-year comparison

    USGS Publications Warehouse

    Mason, J.W.; McChesney, G.J.; McIver, W.R.; Carter, H.R.; Takekawa, J.Y.; Golightly, R.T.; Ackerman, J.T.; Orthmeyer, D.L.; Perry, W.M.; Yee, J.L.; Pierson, M.O.; McCrary, M.D.

    2007-01-01

    We conducted aerial at-sea and coastal surveys to examine the distribution and abundance of seabirds off southern California, from Cambria, California, to the Mexican border. From May 1999-January 2002, we flew 102 d, covered >54,640 km of transect lines, and conducted nine complete surveys of southern California in January, May, and September. We identified 54 species comprising 12 families and counted >135,000 individuals. Seabird densities were greater along island and mainland coastlines than at sea and were usually greatest in January surveys. Densities were greatest at sea near the northern Channel Islands in January and north of Point Conception in May, and lowest in the southwestern portion of the Southern California Bight in all survey months. On coastal transects, seabird densities were greatest along central and southern portions of the mainland coastline from Point Arguello to Mexico. We estimated that 981,000 ?? 144,000 (x?? ?? SE) seabirds occurred in the study area in January, 862,000 ?? 95,000 in May, and 762,000 ?? 72,000 in September. California Gulls (Larus californicus), Western Grebes (Aechmophorus occidentalis), and Cassin's Auklets (Ptychoramphus aleuticus) were most abundant in January surveys at sea, whereas Sooty and Short-tailed shearwaters (Puffinus griseus and P. tenuirostris), phalaropes (Phalaropus spp.), and Western Gulls (Larus. occidentalis) were most abundant in May and September surveys. On coastal transects, California Gulls, Western Grebes, Western Gulls, and Surf Scoters (Melanitta perspicillata) were most abundant in January; Western Grebes, Western Gulls, Surf Scoters, and Brown Pelicans (Pelecanus occidentalis) were most abundant in May; and Sooty Shearwaters, Short-tailed Shearwaters, Western Gulls, Western Grebes, Brown Pelicans, and Heermann's Gulls (Larus heermanni) were most abundant in September. Compared to historical seabird densities collected in the same area two decades ago (1975-1978 and 1980-1983), abundance

  13. Genome-wide identification and expression profiling of the late embryogenesis abundant genes in potato with emphasis on dehydrins.

    PubMed

    Charfeddine, Safa; Saïdi, Mohammed Najib; Charfeddine, Mariam; Gargouri-Bouzid, Radhia

    2015-07-01

    Late embryogenesis abundant (LEA) proteins were first described as accumulating late in plant seed development. They were also shown to be involved in plant responses to environmental stress and as well as in bacteria, yeast and invertebrates. They are known to play crucial roles in dehydration tolerance. This study describes a genome-wide analysis of LEA proteins and the corresponding genes in Solanum tuberosum. Twenty-nine LEA family members encoding genes in the Solanum genome were identified. Phylogenetic analyses allowed the classification of the potato LEA proteins into nine distinct groups. Some of them were identified as putative orthologs of Arabidopsis and rice LEA genes. In silico analyses confirmed the hydrophilicity of most of the StLEA proteins, whereas some of them can be folded. The in silico expression analyses showed that the identified genes displayed tissue-specific, stress and hormone-responsive expression profiles. Five StLEA classified as dehydrins were selected for expression analyses under salt and drought stresses. The data revealed that they were induced by both stresses. The analyses indicate that several factors such us developmental stages, hormones, and dehydration, can regulate the expression and activities of LEA protein. This report can be helpful for the further functional diversity studies and analyses of LEA proteins in potato. These genes can be overexpressed to improve potato abiotic stress response. PMID:25638043

  14. NEW RARE EARTH ELEMENT ABUNDANCE DISTRIBUTIONS FOR THE SUN AND FIVE r-PROCESS-RICH VERY METAL-POOR STARS

    SciTech Connect

    Sneden, Christopher; Lawler, James E.; Den Hartog, Elizabeth A.; Cowan, John J.; Ivans, Inese I. E-mail: jelawler@wisc.edu E-mail: cowan@nhn.ou.edu

    2009-05-15

    We have derived new abundances of the rare earth elements Pr, Dy, Tm, Yb, and Lu for the solar photosphere and for five very metal-poor, neutron-capture r-process-rich giant stars. The photospheric values for all five elements are in good agreement with meteoritic abundances. For the low-metallicity sample, these abundances have been combined with new Ce abundances from a companion paper, and reconsideration of a few other elements in individual stars, to produce internally consistent Ba, rare earth, and Hf (56 {<=} Z {<=} 72) element distributions. These have been used in a critical comparison between stellar and solar r-process abundance mixes.

  15. Distributing flight dynamics products via the World Wide Web

    NASA Technical Reports Server (NTRS)

    Woodard, Mark; Matusow, David

    1996-01-01

    The NASA Flight Dynamics Products Center (FDPC), which make available selected operations products via the World Wide Web, is reported on. The FDPC can be accessed from any host machine connected to the Internet. It is a multi-mission service which provides Internet users with unrestricted access to the following standard products: antenna contact predictions; ground tracks; orbit ephemerides; mean and osculating orbital elements; earth sensor sun and moon interference predictions; space flight tracking data network summaries; and Shuttle transport system predictions. Several scientific data bases are available through the service.

  16. Influence of the vapor flux on temperature, density, and abundance distributions in a multicomponent, porous, icy body

    NASA Technical Reports Server (NTRS)

    Benkhoff, J.; Huebner, W. F.

    1995-01-01

    We calculated the vapor flux of the icy components in the surface layer of a porous, short-period, Jupiter-class comet, in order to investigate the relationship of the observed relative molecular abundances in the coma with those in the nucleus. The model assumes a body containing one major ice component (H20) and up to three minor components of higher volatility (e.g., CO, CO2, CH3OH). The body's porous structure is modeled as a bundle of tubes with a given tortuosity and initially a constant pore diameter. The mass and energy equations for the different volatiles are solved simultaneously under appropiate boundary conditions. Heat is conducted by the matrix and carried by the vapors. The one-dimensional model includes radially inward and outward flowing vapor within the body, complete depletion of less volatile ices in outer layers, and recondensation of vapor in deeper, coller layers. As a result, we obtain the temperature and abundance distribution in the nucleus and the gas flux into the interior and into the coma for each of the volatiles at various positions in the orbit. The ratio of the gas flux of minor volatiles to that of H2) in the coma varies by several orders of magnitude throughout the orbit. Thus, the relative abundances of species observed in the coma are in most cases not the same as those in the nucleus. Results also indicate that it will be impossible to determine the relative abundances of ices more volatile than water from samples taken a few meters below the surface during a comet rendezvous mission. We made calculations for a wide range of different parameters, such as porosity, pore radius, and thermal conductivity of the matrix. To introduce the model we present typical results for a dust-free comet.

  17. Where to nest? Ecological determinants of chimpanzee nest abundance and distribution at the habitat and tree species scale.

    PubMed

    Carvalho, Joana S; Meyer, Christoph F J; Vicente, Luis; Marques, Tiago A

    2015-02-01

    Conversion of forests to anthropogenic land-uses increasingly subjects chimpanzee populations to habitat changes and concomitant alterations in the plant resources available to them for nesting and feeding. Based on nest count surveys conducted during the dry season, we investigated nest tree species selection and the effect of vegetation attributes on nest abundance of the western chimpanzee, Pan troglodytes verus, at Lagoas de Cufada Natural Park (LCNP), Guinea-Bissau, a forest-savannah mosaic widely disturbed by humans. Further, we assessed patterns of nest height distribution to determine support for the anti-predator hypothesis. A zero-altered generalized linear mixed model showed that nest abundance was negatively related to floristic diversity (exponential form of the Shannon index) and positively with the availability of smaller-sized trees, reflecting characteristics of dense-canopy forest. A positive correlation between nest abundance and floristic richness (number of plant species) and composition indicated that species-rich open habitats are also important in nest site selection. Restricting this analysis to feeding trees, nest abundance was again positively associated with the availability of smaller-sized trees, further supporting the preference for nesting in food tree species from dense forest. Nest tree species selection was non-random, and oil palms were used at a much lower proportion (10%) than previously reported from other study sites in forest-savannah mosaics. While this study suggests that human disturbance may underlie the exclusive arboreal nesting at LCNP, better quantitative data are needed to determine to what extent the construction of elevated nests is in fact a response to predators able to climb trees. Given the importance of LCNP as refuge for Pan t. verus our findings can improve conservation decisions for the management of this important umbrella species as well as its remaining suitable habitats. PMID:25224379

  18. A fault detection service for wide area distributed computations.

    SciTech Connect

    Stelling, P.

    1998-06-09

    The potential for faults in distributed computing systems is a significant complicating factor for application developers. While a variety of techniques exist for detecting and correcting faults, the implementation of these techniques in a particular context can be difficult. Hence, we propose a fault detection service designed to be incorporated, in a modular fashion, into distributed computing systems, tools, or applications. This service uses well-known techniques based on unreliable fault detectors to detect and report component failure, while allowing the user to tradeoff timeliness of reporting against false positive rates. We describe the architecture of this service, report on experimental results that quantify its cost and accuracy, and describe its use in two applications, monitoring the status of system components of the GUSTO computational grid testbed and as part of the NetSolve network-enabled numerical solver.

  19. System-wide power management control via clock distribution network

    DOEpatents

    Coteus, Paul W.; Gara, Alan; Gooding, Thomas M.; Haring, Rudolf A.; Kopcsay, Gerard V.; Liebsch, Thomas A.; Reed, Don D.

    2015-05-19

    An apparatus, method and computer program product for automatically controlling power dissipation of a parallel computing system that includes a plurality of processors. A computing device issues a command to the parallel computing system. A clock pulse-width modulator encodes the command in a system clock signal to be distributed to the plurality of processors. The plurality of processors in the parallel computing system receive the system clock signal including the encoded command, and adjusts power dissipation according to the encoded command.

  20. Efficient server selection system for widely distributed multiserver networks

    NASA Astrophysics Data System (ADS)

    Lee, Hyun-pyo; Park, Sung-sik; Lee, Kyoon-Ha

    2001-07-01

    In order to providing more improved quality of Internet service, the access speed to a subscriber's network and a server which is the Internet access device was rapidly enhanced by traffic distribution and installation of high-performance server. But the Internet access quality and the content for a speed were remained out of satisfaction. With such a hazard, an extended node at Internet access device has a limitation for coping with growing network traffic, and the root cause is located in the Middle-mile node between a CP (Content Provider) server and a user node. For such a problem, this paper proposes a new method to select a effective server to a client as minimizing the number of node between the server and the client while keeping the load balance among servers which is clustered by the client's location on the physically distributed multi-site environments. The proposed method use a NSP (Network Status Prober) and a contents server manager so as to get a status of each servers and distributed network, a new architecture will be shown for the server selecting algorithm and the implementation for the algorithm. And also, this paper shows the parameters selecting a best service providing server for client and that the grantor will be confirmed by the experiment over the proposed architectures.

  1. Probabilisitc Geobiological Classification Using Elemental Abundance Distributions and Lossless Image Compression in Recent and Modern Organisms

    NASA Technical Reports Server (NTRS)

    Storrie-Lombardi, Michael C.; Hoover, Richard B.

    2005-01-01

    Last year we presented techniques for the detection of fossils during robotic missions to Mars using both structural and chemical signatures[Storrie-Lombardi and Hoover, 2004]. Analyses included lossless compression of photographic images to estimate the relative complexity of a putative fossil compared to the rock matrix [Corsetti and Storrie-Lombardi, 2003] and elemental abundance distributions to provide mineralogical classification of the rock matrix [Storrie-Lombardi and Fisk, 2004]. We presented a classification strategy employing two exploratory classification algorithms (Principal Component Analysis and Hierarchical Cluster Analysis) and non-linear stochastic neural network to produce a Bayesian estimate of classification accuracy. We now present an extension of our previous experiments exploring putative fossil forms morphologically resembling cyanobacteria discovered in the Orgueil meteorite. Elemental abundances (C6, N7, O8, Na11, Mg12, Ai13, Si14, P15, S16, Cl17, K19, Ca20, Fe26) obtained for both extant cyanobacteria and fossil trilobites produce signatures readily distinguishing them from meteorite targets. When compared to elemental abundance signatures for extant cyanobacteria Orgueil structures exhibit decreased abundances for C6, N7, Na11, All3, P15, Cl17, K19, Ca20 and increases in Mg12, S16, Fe26. Diatoms and silicified portions of cyanobacterial sheaths exhibiting high levels of silicon and correspondingly low levels of carbon cluster more closely with terrestrial fossils than with extant cyanobacteria. Compression indices verify that variations in random and redundant textural patterns between perceived forms and the background matrix contribute significantly to morphological visual identification. The results provide a quantitative probabilistic methodology for discriminating putatitive fossils from the surrounding rock matrix and &om extant organisms using both structural and chemical information. The techniques described appear applicable

  2. Abundance, trends and distribution of baleen whales off Western Alaska and the central Aleutian Islands

    NASA Astrophysics Data System (ADS)

    Zerbini, Alexandre N.; Waite, Janice M.; Laake, Jeffrey L.; Wade, Paul R.

    2006-11-01

    Large whales were extensively hunted in coastal waters off Alaska, but current distribution, population sizes and trends are poorly known. Line transect surveys were conducted in coastal waters of the Aleutian Islands and the Alaska Peninsula in the summer of 2001-2003. Abundances of three species were estimated by conventional and multiple covariate distance sampling (MCDS) methods. Time series of abundance estimates were used to derive rates of increase for fin whales ( Balaenoptera physalus) and humpback whales ( Megaptera novaeangliae). Fin whales occurred primarily from the Kenai Peninsula to the Shumagin Islands, but were abundant only near the Semidi Islands and Kodiak. Humpback whales were found from the Kenai Peninsula to Umnak Island and were more abundant near Kodiak, the Shumagin Islands and north of Unimak Pass. Minke whales ( B. acutorostrata) occurred primarily in the Aleutian Islands, with a few sightings south of the Alaska Peninsula and near Kodiak Island. Humpback whales were observed in large numbers in their former whaling grounds. In contrast, high densities of fin whales were not observed around the eastern Aleutian Islands, where whaling occurred. Average abundance estimates (95% CI) for fin, humpback and minke whales were 1652 (1142-2389), 2644 (1899-3680), and 1233 (656-2315), respectively. Annual rates of increase were estimated at 4.8% (95% CI=4.1-5.4%) for fin and 6.6% (5.2-8.6%) for humpback whales. This study provides the first estimate of the rate of increase of fin whales in the North Pacific Ocean. The estimated trends are consistent with those of other recovering baleen whales. There were no sightings of blue or North Pacific right whales, indicating the continued depleted status of these species.

  3. Distribution, abundance and acoustic properties of Antarctic silverfish ( Pleuragramma antarcticum) in the Ross Sea

    NASA Astrophysics Data System (ADS)

    O'Driscoll, Richard L.; Macaulay, Gavin J.; Gauthier, Stéphane; Pinkerton, Matt; Hanchet, Stuart

    2011-03-01

    Antarctic silverfish ( Pleuragramma antarcticum) is a key link between plankton and the community of top predators in the shelf waters of the Ross Sea. In spite of their abundance and important role in Antarctic food chains, very little is known of many ecological and biological aspects of this species. A combined trawl and acoustic survey of silverfish was carried out on the western Ross Sea shelf during the New Zealand International Polar Year Census of Antarctic Marine Life research voyage on R.V. Tangaroa in February-March 2008. Multi-frequency acoustic data (12, 38, 70, and 120 kHz) allowed discrimination of silverfish marks from those of krill and other associated species. Mark identification was achieved using targeted midwater trawls. Additional midwater and demersal trawls were carried out at randomly selected locations over the shelf as part of the core biodiversity survey. Silverfish were widely distributed over the Ross Sea shelf. Adult silverfish tended to form layers at 100-400 m depth and were sometimes present close to the bottom, where they were frequently caught in demersal trawls shallower than 500 m. A weak layer at about 80 m depth was associated with juvenile silverfish of 50-80 mm standard length. Acoustic backscatter strength from both silverfish and krill marks increased with increasing frequency (i.e., was highest at 120 kHz), which is characteristic of species without an air-filled swimbladder. Acoustic target strengths (TS) for silverfish at 12, 18, 38, 70, and 120 kHz were estimated from anatomically detailed scattering models based on computed tomography (CT) scans of frozen specimens. The relationship between TS and fish length at 38 kHz was sensitive to estimates of density and sound speed contrast within the fish, especially for small specimens (less than 110 mm SL). Our best estimate of the acoustic biomass of silverfish in the study area was 592 000 t (95% confidence interval 326 000-866 000 t). However, the biomass of juvenile

  4. Fitting statistical distributions to sea duck count data: implications for survey design and abundance estimation

    USGS Publications Warehouse

    Zipkin, Elise F.; Leirness, Jeffery B.; Kinlan, Brian P.; O'Connell, Allan F.; Silverman, Emily D.

    2014-01-01

    Determining appropriate statistical distributions for modeling animal count data is important for accurate estimation of abundance, distribution, and trends. In the case of sea ducks along the U.S. Atlantic coast, managers want to estimate local and regional abundance to detect and track population declines, to define areas of high and low use, and to predict the impact of future habitat change on populations. In this paper, we used a modified marked point process to model survey data that recorded flock sizes of Common eiders, Long-tailed ducks, and Black, Surf, and White-winged scoters. The data come from an experimental aerial survey, conducted by the United States Fish & Wildlife Service (USFWS) Division of Migratory Bird Management, during which east-west transects were flown along the Atlantic Coast from Maine to Florida during the winters of 2009–2011. To model the number of flocks per transect (the points), we compared the fit of four statistical distributions (zero-inflated Poisson, zero-inflated geometric, zero-inflated negative binomial and negative binomial) to data on the number of species-specific sea duck flocks that were recorded for each transect flown. To model the flock sizes (the marks), we compared the fit of flock size data for each species to seven statistical distributions: positive Poisson, positive negative binomial, positive geometric, logarithmic, discretized lognormal, zeta and Yule–Simon. Akaike’s Information Criterion and Vuong’s closeness tests indicated that the negative binomial and discretized lognormal were the best distributions for all species for the points and marks, respectively. These findings have important implications for estimating sea duck abundances as the discretized lognormal is a more skewed distribution than the Poisson and negative binomial, which are frequently used to model avian counts; the lognormal is also less heavy-tailed than the power law distributions (e.g., zeta and Yule–Simon), which are

  5. Regional Distribution Shifts Help Explain Local Changes in Wintering Raptor Abundance: Implications for Interpreting Population Trends

    PubMed Central

    Paprocki, Neil; Heath, Julie A.; Novak, Stephen J.

    2014-01-01

    Studies of multiple taxa across broad-scales suggest that species distributions are shifting poleward in response to global climate change. Recognizing the influence of distribution shifts on population indices will be an important part of interpreting trends within management units because current practice often assumes that changes in local populations reflect local habitat conditions. However, the individual- and population-level processes that drive distribution shifts may occur across a large, regional scale and have little to do with the habitats within the management unit. We examined the latitudinal center of abundance for the winter distributions of six western North America raptor species using Christmas Bird Counts from 1975–2011. Also, we considered whether population indices within western North America Bird Conservation Regions (BCRs) were explained by distribution shifts. All six raptors had significant poleward shifts in their wintering distributions over time. Rough-legged Hawks (Buteo lagopus) and Golden Eagles (Aquila chrysaetos) showed the fastest rate of change, with 8.41 km yr−1 and 7.74 km yr−1 shifts, respectively. Raptors may be particularly responsive to warming winters because of variable migration tendencies, intraspecific competition for nesting sites that drives males to winter farther north, or both. Overall, 40% of BCR population trend models were improved by incorporating information about wintering distributions; however, support for the effect of distribution on BCR indices varied by species with Rough-legged Hawks showing the most evidence. These results emphasize the importance of understanding how regional distribution shifts influence local-scale population indices. If global climate change is altering distribution patterns, then trends within some management units may not reflect changes in local habitat conditions. The methods used to monitor and manage bird populations within local BCRs will fundamentally change as

  6. Hierarchical spatial models for predicting pygmy rabbit distribution and relative abundance

    USGS Publications Warehouse

    Wilson, T.L.; Odei, J.B.; Hooten, M.B.; Edwards, T.C., Jr.

    2010-01-01

    Conservationists routinely use species distribution models to plan conservation, restoration and development actions, while ecologists use them to infer process from pattern. These models tend to work well for common or easily observable species, but are of limited utility for rare and cryptic species. This may be because honest accounting of known observation bias and spatial autocorrelation are rarely included, thereby limiting statistical inference of resulting distribution maps. We specified and implemented a spatially explicit Bayesian hierarchical model for a cryptic mammal species (pygmy rabbit Brachylagus idahoensis). Our approach used two levels of indirect sign that are naturally hierarchical (burrows and faecal pellets) to build a model that allows for inference on regression coefficients as well as spatially explicit model parameters. We also produced maps of rabbit distribution (occupied burrows) and relative abundance (number of burrows expected to be occupied by pygmy rabbits). The model demonstrated statistically rigorous spatial prediction by including spatial autocorrelation and measurement uncertainty. We demonstrated flexibility of our modelling framework by depicting probabilistic distribution predictions using different assumptions of pygmy rabbit habitat requirements. Spatial representations of the variance of posterior predictive distributions were obtained to evaluate heterogeneity in model fit across the spatial domain. Leave-one-out cross-validation was conducted to evaluate the overall model fit. Synthesis and applications. Our method draws on the strengths of previous work, thereby bridging and extending two active areas of ecological research: species distribution models and multi-state occupancy modelling. Our framework can be extended to encompass both larger extents and other species for which direct estimation of abundance is difficult. ?? 2010 The Authors. Journal compilation ?? 2010 British Ecological Society.

  7. Microbial rhodopsins: wide distribution, rich diversity and great potential

    PubMed Central

    Kurihara, Marie; Sudo, Yuki

    2015-01-01

    One of the major topics in biophysics and physicobiology is to understand and utilize biological functions using various advanced techniques. Taking advantage of the photoreactivity of the seven-transmembrane rhodopsin protein family has been actively investigated by a variety of methods. Rhodopsins serve as models for membrane-embedded proteins, for photoactive proteins and as a fundamental tool for optogenetics, a new technology to control biological activity with light. In this review, we summarize progress of microbial rhodopsin research from the viewpoint of distribution, diversity and potential. PMID:27493861

  8. Discovery of a widely distributed toxin biosynthetic gene cluster

    PubMed Central

    Lee, Shaun W.; Mitchell, Douglas A.; Markley, Andrew L.; Hensler, Mary E.; Gonzalez, David; Wohlrab, Aaron; Dorrestein, Pieter C.; Nizet, Victor; Dixon, Jack E.

    2008-01-01

    Bacteriocins represent a large family of ribosomally produced peptide antibiotics. Here we describe the discovery of a widely conserved biosynthetic gene cluster for the synthesis of thiazole and oxazole heterocycles on ribosomally produced peptides. These clusters encode a toxin precursor and all necessary proteins for toxin maturation and export. Using the toxin precursor peptide and heterocycle-forming synthetase proteins from the human pathogen Streptococcus pyogenes, we demonstrate the in vitro reconstitution of streptolysin S activity. We provide evidence that the synthetase enzymes, as predicted from our bioinformatics analysis, introduce heterocycles onto precursor peptides, thereby providing molecular insight into the chemical structure of streptolysin S. Furthermore, our studies reveal that the synthetase exhibits relaxed substrate specificity and modifies toxin precursors from both related and distant species. Given our findings, it is likely that the discovery of similar peptidic toxins will rapidly expand to existing and emerging genomes. PMID:18375757

  9. Local Abundance Patterns of Noctuid Moths in Olive Orchards: Life-History Traits, Distribution Type and Habitat Interactions

    PubMed Central

    Pérez-Guerrero, Sergio; Redondo, Alberto José; Yela, José Luis

    2011-01-01

    Local species abundance is related to range size, habitat characteristics, distribution type, body size, and life-history variables. In general, habitat generalists and polyphagous species are more abundant in broad geographical areas. Underlying this, local abundance may be explained from the interactions between life-history traits, chorological pattern, and the local habitat characteristics. The relationship within taxa between life-history traits, distribution area, habitat characteristics, and local abundance of the noctuid moth (Lepidoptera: Noctuidae) assemblage in an olive orchard, one of the most important agro-ecosystems in the Mediterranean basin, was analyzed. A total of 66 species were detected over three years of year-round weekly samplings using the light-trap method. The life-history traits examined and the distribution type were found to be related to the habitat-species association, but none of the biological strategies defined from the association to the different habitats were linked with abundance. In contrast to general patterns, dispersal ability and number of generations per year explained differences in abundance. The relationships were positive, with opportunistic taxa that have high mobility and several generations being locally more abundant. In addition, when the effect of migrant species was removed, the distribution type explained abundance differences, with Mediterranean taxa (whose baricenter is closer to the studied area) being more abundant. PMID:21529251

  10. Distribution and Abundance of Insertion Sequences among Natural Isolates of Escherichia coli

    PubMed Central

    Sawyer, Stanley A.; Dykhuizen, Daniel E.; DuBose, Robert F.; Green, Louis; Mutangadura-Mhlanga, T.; Wolczyk, David F.; Hartl, Daniel L.

    1987-01-01

    A reference collection of 71 natural isolates of Escherichia coli (the ECOR collection) has been studied with respect to the distribution and abundance of transposable insertion sequences using DNA hybridization. The data include 1173 occurrences of six unrelated insertion sequences (IS 1, IS2, IS3, IS4, IS5 and IS 30). The number of insertion elements per strain, and the sizes of DNA restriction fragments containing them, is highly variable and can be used to discriminate even among closely related strains. The occurrence and abundance of pairs of unrelated insertion sequences are apparently statistically independent, but significant correlations result from stratifications in the reference collection. However, there is a highly significant positive association among the insertion sequences considered in the aggregate. Nine branching process models, which differ in assumptions regarding the regulation of transposition and the effect of copy number on fitness, have been evaluated with regard to their fit of the observed distributions. No single model fits all copy number distributions. The best models incorporate no regulation of transposition and a moderate to strong decrease in fitness with increasing copy number for IS1 and IS5, strong regulation of transposition and a negligible to weak decrease in fitness with increasing copy number for IS3, and less than strong regulation of transposition for IS2, IS 4 and IS30. PMID:3030884

  11. Distribution of neurotensin/neuromedin N mRNA in rat forebrain: Unexpected abundance in hippocampus and subiculum

    SciTech Connect

    Alexander, M.J.; Miller, M.A.; Dorsa, D.M.; Bullock, B.P.; Helloni, R.H. Jr.; Dobner, P.R.; Leeman, S.E. )

    1989-07-01

    The authors have used in situ hybridization to determine the regional distribution of mRNA encoding the neurotensin/neuromedin N (NT/N) precursor in the forebrain of the adult male rat. Cells containing NT/N mRNA are widely distributed in the forebrain. These areas include the septum, bed nucleus of the stria terminalis, preoptic area, hypothalamus, amygdala, accumbens nucleus, caudate-putamen, and piriform and retrosplenial cortex. In general, the regional distribution of NT/N mRNA corresponds to the previously determined distribution of neurotensin-immunoreactive cell bodies; however, several notable exceptions were observed. The most striking difference occurs specifically in the CA1 region of the hippocampus, where intense labeling is associated with the pyramidal cell layer despite the reported absence of neurotensin-immunoreactive cells in this region. A second major discrepancy between NT/N mRNA abundance and neurotensin-immunoreactivity occurs in the intensely labeled subiculum, a region that contains only scattered neurotensin-immunoreactive cells in the adult. These results suggest that, in specific regions of the forebrain, NT/N precursor is processed to yield products other than neurotensin. In addition, these results provide an anatomical basis for studying the physiological regulation of NT/N mRNA levels in the forebrain.

  12. The global distribution, abundance, and stability of SO2 on Io

    NASA Technical Reports Server (NTRS)

    Mcewen, Alfred S.; Soderblom, Laurence A.; Johnson, Torrence V.; Matson, Dennis L.

    1988-01-01

    Voyager multispectral mosaics, earth-observed spectra, and photometric characterizations have been used to model and globally map the SO2 distribution and abundances, the bolometric hemispheric albedos, and the passive surface temperatures on Io. The SO2 is noted to be concentrated in the bright equatorial band, while being deficient in the region defined by Pele-type volcanic eruptions and the polar regions. The brightest, locally coldest areas correspond to SO2-rich regions, although many small patches occur elsewhere. These results are found to support the regional cold-trapping model for the surface and atmospheric SO2 of Fanale et al. (1982).

  13. Distribution, abundance and trail characteristics of acorn worms at Australian continental margins

    NASA Astrophysics Data System (ADS)

    Anderson, T. J.; Przeslawski, R.; Tran, M.

    2011-04-01

    Acorn worms (Enteropneusta), which were previously thought to be a missing link in understanding the evolution of chordates, are an unusual and potentially important component of many deep-sea benthic environments, particularly for nutrient cycling. Very little is known about their distribution, abundance, or behaviour in deep-sea environments around the world, and almost nothing is known about their distribution within Australian waters. In this study, we take advantage of two large-scale deep-sea mapping surveys along the eastern (northern Lord Howe Rise) and western continental margins of Australia to quantify the distribution, abundance and trail-forming behaviour of this highly unusual taxon. This is the first study to quantify the abundance and trail behaviour of acorn worms within Australian waters and provides the first evidence of strong depth-related distributions. Acorn worm densities and trail activity were concentrated between transect-averaged depths of 1600 and 3000 m in both eastern and western continental margins. The shallow limit of their depth distribution was 1600 m. The deeper limit was less well-defined, as individuals were found in small numbers below 3000 down to 4225 m. This distributional pattern may reflect a preference for these depths, possibly due to higher availability of nutrients, rather than a physiological constraint to greater depths. Sediment characteristics alone were poor predictors of acorn worm densities and trail activity. High densities of acorn worms and trails were associated with sandy-mud sediments, but similar sediment characteristics in either shallower or deeper areas did not support similar densities of acorn worms or trails. Trail shapes varied between eastern and western margins, with proportionally more meandering trails recorded in the east, while spiral and meandering trails were both common in the west. Trail shape varied by depth, with spiral-shaped trails dominant in areas of high acorn worm densities

  14. Niche and neutral models predict asymptotically equivalent species abundance distributions in high-diversity ecological communities

    PubMed Central

    Chisholm, Ryan A.; Pacala, Stephen W.

    2010-01-01

    A fundamental challenge in ecology is to understand the mechanisms that govern patterns of relative species abundance. Previous numerical simulations have suggested that complex niche-structured models produce species abundance distributions (SADs) that are qualitatively similar to those of very simple neutral models that ignore differences between species. However, in the absence of an analytical treatment of niche models, one cannot tell whether the two classes of model produce the same patterns via similar or different mechanisms. We present an analytical proof that, in the limit as diversity becomes large, a strong niche model give rises to exactly the same asymptotic form of SAD as the neutral model, and we verify the analytical predictions for a Panamanian tropical forest data set. Our results strongly suggest that neutral processes drive patterns of relative species abundance in high-diversity ecological communities, even when strong niche structure exists. However, neutral theory cannot explain what generates high diversity in the first place, and it may not be valid in low-diversity communities. Our results also confirm that neutral theory cannot be used to infer an absence of niche structure or to explain ecosystem function. PMID:20733073

  15. Distribution and abundance of American eels in the White Oak River estuary, North Carolina

    USGS Publications Warehouse

    Hightower, J.E.; Nesnow, C.

    2006-01-01

    Apparent widespread declines in abundance of Anguilla rostrata (American eel) have reinforced the need for information regarding its life history and status. We used commercial eel pots and crab (peeler) pots to examine the distribution, condition, and abundance of American eels within the White Oak River estuary, NC, during summers of 2002-2003. Catch of American eels per overnight set was 0.35 (SE = 0.045) in 2002 and 0.49 (SE = 0.044) in 2003. There was not a significant linear relationship between catch per set and depth in 2002 (P = 0.31, depth range 0.9-3.4 m) or 2003 (P = 0.18, depth range 0.6-3.4 m). American eels from the White Oak River were in good condition, based on the slope of a length-weight relationship (3.41) compared to the median slope (3.15) from other systems. Estimates of population density from grid sampling in 2003 (300 mm and larger: 4.0-13.8 per ha) were similar to estimates for the Hudson River estuary, but substantially less than estimates from other (smaller) systems including tidal creeks within estuaries. Density estimates from coastal waters can be used with harvest records to examine whether overfishing has contributed to the recent apparent declines in American eel abundance.

  16. Abundance, Diversity, and Depth Distribution of Planctomycetes in Acidic Northern Wetlands

    PubMed Central

    Ivanova, Anastasia O.; Dedysh, Svetlana N.

    2011-01-01

    Members of the bacterial phylum Planctomycetes inhabit various aquatic and terrestrial environments. In this study, fluorescence in situ hybridization (FISH) was applied to assess the abundance and depth distribution of these bacteria in nine different acidic wetlands of Northern Russia. Planctomycetes were most abundant in the oxic part of the wetland profiles. The respective cell numbers were in the range 1.1–6.7 × 107 cells g−1 of wet peat, comprising 2–14% of total bacterial cells, and displaying linear correlation to the peat water pH. Most peatland sites showed a sharp decline of planctomycete abundance with depth, while in two particular sites this decline was followed by a second population maximum in an anoxic part of the bog profile. Oxic peat layers were dominated by representatives of the Isosphaera–Singulisphaera group, while anoxic peat was inhabited mostly by Zavarzinella- and Pirellula-like planctomycetes. Phylogenetically related bacteria of the candidate division OP3 were detected in both oxic and anoxic peat layers with cell densities of 0.6–4.6 × 106 cells g−1 of wet peat. PMID:22279446

  17. Sharing lattice QCD data over a widely distributed file system

    NASA Astrophysics Data System (ADS)

    Amagasa, T.; Aoki, S.; Aoki, Y.; Aoyama, T.; Doi, T.; Fukumura, K.; Ishii, N.; Ishikawa, K.-I.; Jitsumoto, H.; Kamano, H.; Konno, Y.; Matsufuru, H.; Mikami, Y.; Miura, K.; Sato, M.; Takeda, S.; Tatebe, O.; Togawa, H.; Ukawa, A.; Ukita, N.; Watanabe, Y.; Yamazaki, T.; Yoshie, T.

    2015-12-01

    JLDG is a data-grid for the lattice QCD (LQCD) community in Japan. Several large research groups in Japan have been working on lattice QCD simulations using supercomputers distributed over distant sites. The JLDG provides such collaborations with an efficient method of data management and sharing. File servers installed on 9 sites are connected to the NII SINET VPN and are bound into a single file system with the GFarm. The file system looks the same from any sites, so that users can do analyses on a supercomputer on a site, using data generated and stored in the JLDG at a different site. We present a brief description of hardware and software of the JLDG, including a recently developed subsystem for cooperating with the HPCI shared storage, and report performance and statistics of the JLDG. As of April 2015, 15 research groups (61 users) store their daily research data of 4.7PB including replica and 68 million files in total. Number of publications for works which used the JLDG is 98. The large number of publications and recent rapid increase of disk usage convince us that the JLDG has grown up into a useful infrastructure for LQCD community in Japan.

  18. Widely Tunable Distributed Bragg Reflectors Integrated into Nanowire Waveguides.

    PubMed

    Fu, Anthony; Gao, Hanwei; Petrov, Petar; Yang, Peidong

    2015-10-14

    Periodic structures with dimensions on the order of the wavelength of light can tailor and improve the performance of optical components, and they can enable the creation of devices with new functionalities. For example, distributed Bragg reflectors (DBRs), which are created by periodic modulations in a structure's dielectric medium, are essential in dielectric mirrors, vertical cavity surface emitting lasers, fiber Bragg gratings, and single-frequency laser diodes. This work introduces nanoscale DBRs integrated directly into gallium nitride (GaN) nanowire waveguides. Photonic band gaps that are tunable across the visible spectrum are demonstrated by precisely controlling the grating's parameters. Numerical simulations indicate that in-wire DBRs have significantly larger reflection coefficients in comparison with the nanowire's end facet. By comparing the measured spectra with the simulated spectra, the index of refraction of the GaN nanowire waveguides was extracted to facilitate the design of photonic coupling structures that are sensitive to phase-matching conditions. This work indicates the potential to design nanowire-based devices with improved performance for optical resonators and optical routing. PMID:26379092

  19. Migratory connectivity of a widely distributed songbird, the American redstart (Setophaga ruticilla)

    USGS Publications Warehouse

    Norris, D.R.; Marra, P.P.; Bowen, G.J.; Ratcliffe, L.M.; Royle, J. Andrew; Kyser, T.K.

    2006-01-01

    Determining the degree of connectivity between breeding and wintering populations is critical for understanding the ecology and evolution of migratory systems. We analyzed stable hydrogen isotopic compositions in tail feathers ($Dw) collected from 26 sites in 11 countries throughout the wintering range of the American Redstart (Setophaga ruticilla), a Nearctic- Neotropical migratory passerine bird. Feathers were assumed to have molted on the breeding grounds, and $Dw was used to estimate breeding origin. Values of $Dw were highly correlated with longitude of sampling location, indicating that breeding populations were generally distributed along the east-west axis of the wintering grounds. Within the Caribbean region, Florida, and Bahamas, $Dw values were negatively correlated with winter latitude, which suggests that American Redstarts exhibit a pattern of chain migration in which individuals wintering at northern latitudes are also the most northern breeders. To identify the most probable breeding regions, we used a likelihood-assignment test incorporated with a prior probability of breeding abundance using Bayes?s rule. Expected $D values of feathers from five breeding regions were based on interpolated $D values from a model of continent-wide growing-season $D values in precipitation ($Dp) and were adjusted to account for a discrimination factor between precipitation and feathers. At most wintering locations, breeding assignments were significantly different from expected frequencies based on relative breeding abundance. Birds wintering in eastern and western Mexico had a high probability of breeding in northwest and midwest North America, whereas birds in the Greater and Lesser Antilles were likely to have originated from breeding regions in the northeast and southeast, respectively. Migratory connectivity, such as we report here, implies that the dynamics of breeding and nonbreeding populations may be linked at a regional scale. These results provide a key

  20. [Composition, abundance and distribution of populations of commercially important gastropods in La Guajira, Colombian Caribbean].

    PubMed

    Nieto-Bernal, Ramón; Luis, Chasqui; Rodriguez, Angélica María; Castro, Erick; Gil-Agudelo, Diego L

    2013-06-01

    In the continental Colombian Caribbean the conch resource exploitation and the status of snails populations has been poorly studied, which are reflected in the lack of fisheries management. This study assesses composition, population density and distribution of the gastropods species that make conch resource in La Guajira region. Underwater visual censuses for snails were performed between September-November 2009 in 145100x4m (400m2) transects, spanning a total area of 56920m2 between Riohacha and Cabo de la Vela. The study was complemented with the evaluation of composition, abundance and size of gastropods conch found in the discarded-by-fishermen shell mounds in 13 beaches. In October 2010 another 40 transects were evaluated (16 000 m2) from the Southern of Riohacha to the Camarones village (La Guajira). We found a total of 9911 snails belonging to 12 species, the most abundant being Strombus pugilis with 8 912 individuals and an average density of 1 538.4 +/- 3 662.6 ind./ha, followed by Vasum muricatum with 374 individuals and an average density of 51.8 +/- 91.2 ind./ha. Calculating the importance value index (IVI) for both living organisms as the empty shells on beaches, shows that Turbinella angulata is the most used species by artisanal fishermen in the region. Cassis madagascariensis and Cassis tuberosa are also important snail resources in the region (as suggested by the number of empty shells found in beaches), but its densities were low. Strombus gigas, with only three living organisms found in the area, presented the lowest abundance ever found in the Colombian Caribbean (0.52 +/- 3.6 ind./ha), showing that queen conch population in La Guajira cannot support commercial exploitation. The abundance of discarded S. gigas shells on beaches suggests resource exploitation in the recent past. Results remarks the urgency of implementing management plans for snail fisheries in the region. PMID:23885583

  1. Wide distribution and glacial origin of polar gypsum on Mars

    NASA Astrophysics Data System (ADS)

    Massé, M.; Bourgeois, O.; Le Mouélic, S.; Verpoorter, C.; Spiga, A.; Le Deit, L.

    2012-02-01

    The North Polar Cap of Mars is associated with different kinds of superficial sediments, including the Circumpolar Dune Field, interior dune fields and sedimentary veneers scattered over the ice cap. In order to resolve the mineralogical composition and the regional distribution of these sediments, we processed OMEGA and CRISM hyperspectral data with an original method based on spectral derivation. We find that gypsum is present in all areas where undefined hydrated minerals had been previously detected, including superficial sedimentary veneers covering the North Polar Cap, interior dune fields and the whole Circumpolar Dune Field. Morphological and structural analyses reveal that these gypsum crystals derive directly from the interior of the ice cap. The source of superficial sedimentary veneers is the dust that was previously contained in the upper part of the ice cap, the ice-rich North Polar Layered Deposits (NPLD). This gypsum-bearing dust was released, on south-facing slopes of spiral troughs and arcuate scarps, by ice ablation controlled by katabatic winds. By the analysis of all associations of erosional scarps and dune fields over the North Polar Cap, we also demonstrate that the polar dunes are composed of sand-sized particles that were previously contained in the sediment-rich Basal Unit (BU), corresponding to the lower part of the ice cap. These particles contain gypsum and were released from the BU, by regressive ablation of ice at marginal scarps that border the North Polar Cap and by vertical ablation of ice on Olympia Planum. From a reconstruction of wind streamlines over and around the ice cap, we infer that katabatic winds descending from the polar high and rotating around the North Polar Cap control the release of these gypsum-bearing particles by ice ablation and the redistribution of these particles in the Circumpolar Dune Field.

  2. Spatial and temporal variation in the abundance, distribution and population structure of epibenthic megafauna in Port Foster, Deception Island

    NASA Astrophysics Data System (ADS)

    Cranmer, T. L.; Ruhl, H. A.; Baldwin, R. J.; Kaufmann, R. S.

    2003-06-01

    Abundance and spatial distribution of epibenthic megafauna were examined at Port Foster, Deception Island, five times between March 1999 and November 2000. Camera sled surveys and bottom trawls were used to identify and collect specimens, and camera sled photographs also were used to determine abundances and spatial distributions for each species. The ophiuroid Ophionotus victoriae, the regular echinoid Sterechinus neumayeri, and one or more species of Porifera were the most abundant taxa during this sampling period. Abundances of O. victoriae varied throughout the annual cycle, peaking in June 2000, and were correlated positively with sedimentation rates. In contrast, abundances of S. neumayeri were consistent throughout the sampling period, except for a peak in June 2000, during austral winter. Peak abundances for both species coincided with a large number of small individuals, indicating apparent recruitment events for O. victoriae and S. neumayeri during this time period. Poriferans, as a group, had statistically similar abundances during each sampling period. Low-abundance species tended to be aggregated on both small and large spatial scales, their distributions probably influenced by reproductive method, gregarious settlement, and food availability. The spatial distribution of S. neumayeri in June 2000 and O. victoriae was random across multiple spatial scales, perhaps in response to food availability and broad environmental tolerances, respectively.

  3. Distribution and abundance of fungi in the soils of Taylor Valley, Antarctica

    USGS Publications Warehouse

    Connell, L.; Redman, R.; Craig, S.; Rodriguez, R.

    2006-01-01

    The occurrence and distribution of culturable fungi in Taylor Valley, Antarctica was assessed in terms of soil habitat. Soil transects throughout the valley revealed differential habitat utilization between filamentous and non-filamentous (yeast and yeast-like) fungi. In addition, there were significant differences in species distribution patterns with respect to soil pH, moisture, distance from marine coastline, carbon, chlorophyll a, salinity, elevation and solar inputs. Filamentous fungal abundance is most closely associated with habitats having higher pH, and soil moistures. These close associations were not found with yeast and yeast-like fungi demonstrating that yeast and yeast-like fungi utilize a broader range of habitat. An intensive survey of the Victoria Land is necessary to gain a better understanding of their role in soil functioning and nutrient cycling processes. ?? 2006 Elsevier Ltd. All rights reserved.

  4. Wildlife distribution and abundance on the Utah oil shale tracts 1975-1984

    SciTech Connect

    Grant, C.V.

    1986-07-01

    Distribution and abundance of 215 amphibians, reptiles, birds, and mammals were monitored for 10 years on Utah's Oil Shale Tracts using line transects, mist netting, and live trapping. Wildlife monitoring was conducted in four major vegetation types and during all seasons to establish a quantitative baseline for use in impact identification during oil shale mining. Habitat preferences were established for many species in cold desert vegetation of two types of desert shrub, and juniper and riparian woodlands. Seasonal, annual, and habitat distribution of each class demonstrated a variety of adaptive responses to environmental variables. The most important environmental variables, that is, those factors resulting in a predictable change in wildlife populations, were, in descending order: weather, food resource, shelter, and competition. 31 references, 14 figures, 10 tables.

  5. Distribution and Abundance of the World's Smallest Primate, Microcebus berthae, in Central Western Madagascar.

    PubMed

    Schäffler, Livia; Kappeler, Peter M

    2014-01-01

    The distribution of most recently discovered or described lemur species remains poorly known, but many appear to have small geographical ranges, making them vulnerable to extinction. Research can contribute to future conservation actions on behalf of these species by providing accurate information on local distribution and abundance. The distribution of the world's smallest primate, the endangered Madame Berthe's mouse lemur (Microcebus berthae), is limited to the Menabe Central region of western Madagascar. This species was discovered in the 1990s, but many fundamental aspects of its ecology remain unknown. The aims of our study were therefore to determine the actual distribution of Microcebus berthae across the forests of this region, to estimate population density, and to examine the species' response to anthropogenic activities. We established 35 1-km line transects across Menabe Central, on which we surveyed mouse lemurs by distance sampling and live trapping. Microcebus berthae does not occur in all remaining forests of this small region and its population density is highly heterogeneous, both across its geographic range and locally. Within its area of occupancy, the population of Microcebus berthae not only was distributed according to spatial heterogeneities of the habitat, but also responded to anthropogenic disturbances and varied seasonally. Our results indicate that Microcebus berthae is susceptible to habitat degradation and avoids human environments spatially. As none of the forest remnants in which the species still occurs were officially protected until recently, immediate conservation actions should focus on effectively protecting Kirindy and Ambadira forests. PMID:24719496

  6. How within field abundance and spatial distribution patterns of earthworms and macropores depend on soil tillage

    NASA Astrophysics Data System (ADS)

    van Schaik, Loes; Palm, Juliane; Schröder, Boris

    2014-05-01

    Earthworms play a key role in soil systems. They are ecosystem engineers affecting soil structure as well as the transport and availability of water and solutes through their burrowing behaviour. There are three different ecological earthworm types with different burrowing behaviour that can result in varying local infiltration patterns: from rapid deep vertical infiltration to a stronger diffuse distribution of water and solutes in the upper soil layers. The small scale variation in earthworm abundance is often very high and within fields earthworm population processes might result in an aggregated pattern. The question arises how the local distribution of earthworms affects spatial distributions of macroporosity and how both are influenced by soil tillage. Therefore we performed a total number of 430 earthworm samplings on four differently tilled agricultural fields in the Weiherbach catchment (South East Germany). Additionally, at a limited amount of 32 locations on two of the fields we performed sprinkling experiments with brilliant blue and excavated the soil to count macropores at different soil depths (10 cm, 30 cm and 50 cm) to compare macropore distributions to the earthworm distributions.

  7. Abundance and Size Distribution of the Sacoglossan Elysia viridis on Co-Occurring Algal Hosts on the Swedish West Coast

    PubMed Central

    Baumgartner, Finn A.; Toth, Gunilla B.

    2014-01-01

    Sacoglossans are specialized marine herbivores that tend to have a close evolutionary relationship with their macroalgal hosts, but the widely distributed species Elysia viridis can associate with several algal species. However, most previous investigations on the field abundance and size distribution of E. viridis have focussed on Codium spp. in the British Isles, and algae from this genus are considered superior hosts for E. viridis. In the present study, we investigated the abundance and size distribution of E. viridis on 6 potential host algae with differing morphologies (the septate species Cladophora sericea, Cladophora rupestris, Chaetomorpha melagonium, and Ceramium virgatum, as well as the siphonaceous species Codium fragile and Bryopsis sp.) at 2 sites on the Swedish west coast over the course of a year. In spring, slugs were almost absent from all algal hosts. In summer and autumn, E. viridis consistently occurred on several of the algal species at both sites. The highest number of small E. viridis were found on C. sericea, intermediate numbers of significantly larger E. viridis were found on C. rupestris, while fewer, intermediate sized animals were found on C. fragile. Throughout the study period, only a few E. viridis individuals were found on C. melagonium, Bryopsis sp., and C. virgatum. Our results indicate that E. viridis is an annual species in Sweden, capable of exploiting co-occurring congeneric and intergeneric algal hosts with differing morphologies. These results corroborate previous findings that E. viridis can exploit several different algal species, but does not indicate that C. fragile is a superior host. PMID:24647524

  8. Projecting the impacts of climate change on skipjack tuna abundance and spatial distribution.

    PubMed

    Dueri, Sibylle; Bopp, Laurent; Maury, Olivier

    2014-03-01

    Climate-induced changes in the physical, chemical, and biological environment are expected to increasingly stress marine ecosystems, with important consequences for fisheries exploitation. Here, we use the APECOSM-E numerical model (Apex Predator ECOSystem Model - Estimation) to evaluate the future impacts of climate change on the physiology, spatial distribution, and abundance of skipjack tuna, the worldwide most fished species of tropical tuna. The main novelties of our approach lie in the mechanistic link between environmental factors, metabolic rates, and behavioral responses and in the fully three dimensional representation of habitat and population abundance. Physical and biogeochemical fields used to force the model are provided by the last generation of the IPSL-CM5 Earth System Model run from 1990 to 2100 under a 'business-as-usual' scenario (RCP8.5). Our simulations show significant changes in the spatial distribution of skipjack tuna suitable habitat, as well as in their population abundance. The model projects deterioration of skipjack habitat in most tropical waters and an improvement of habitat at higher latitudes. The primary driver of habitat changes is ocean warming, followed by food density changes. Our projections show an increase of global skipjack biomass between 2010 and 2050 followed by a marked decrease between 2050 and 2095. Spawning rates are consistent with population trends, showing that spawning depends primarily on the adult biomass. On the other hand, growth rates display very smooth temporal changes, suggesting that the ability of skipjack to keep high metabolic rates in the changing environment is generally effective. Uncertainties related to our model spatial resolution, to the lack or simplification of key processes and to the climate forcings are discussed. PMID:24464855

  9. Temporal variations in the abundance and composition of biofilm communities colonizing drinking water distribution pipes.

    PubMed

    Kelly, John J; Minalt, Nicole; Culotti, Alessandro; Pryor, Marsha; Packman, Aaron

    2014-01-01

    Pipes that transport drinking water through municipal drinking water distribution systems (DWDS) are challenging habitats for microorganisms. Distribution networks are dark, oligotrophic and contain disinfectants; yet microbes frequently form biofilms attached to interior surfaces of DWDS pipes. Relatively little is known about the species composition and ecology of these biofilms due to challenges associated with sample acquisition from actual DWDS. We report the analysis of biofilms from five pipe samples collected from the same region of a DWDS in Florida, USA, over an 18 month period between February 2011 and August 2012. The bacterial abundance and composition of biofilm communities within the pipes were analyzed by heterotrophic plate counts and tag pyrosequencing of 16S rRNA genes, respectively. Bacterial numbers varied significantly based on sampling date and were positively correlated with water temperature and the concentration of nitrate. However, there was no significant relationship between the concentration of disinfectant in the drinking water (monochloramine) and the abundance of bacteria within the biofilms. Pyrosequencing analysis identified a total of 677 operational taxonomic units (OTUs) (3% distance) within the biofilms but indicated that community diversity was low and varied between sampling dates. Biofilms were dominated by a few taxa, specifically Methylomonas, Acinetobacter, Mycobacterium, and Xanthomonadaceae, and the dominant taxa within the biofilms varied dramatically between sampling times. The drinking water characteristics most strongly correlated with bacterial community composition were concentrations of nitrate, ammonium, total chlorine and monochloramine, as well as alkalinity and hardness. Biofilms from the sampling date with the highest nitrate concentration were the most abundant and diverse and were dominated by Acinetobacter. PMID:24858562

  10. Local distribution and abundance of Cardisoma guanhumi Latreille, 1928 (Brachyura: Gecarcinidae) in southern Brazil.

    PubMed

    Oliveira-Neto, J F; Batista, E; Metri, R; Metri, C B

    2014-02-01

    The blue land crab, Cardisoma guanhumi Latreille, 1828 (Brachyura: Gecarcinidae) is officially included in the list of over-exploited species in Brazil, although still abundantly found in the state of Santa Catarina, the southern limit of its distribution. This species was found in forested areas, gardens, and grassy areas, including crabs with carapace width larger than 80mm. The existence of this population with these characteristics is surprising, since there is only one official record of the species in the southern region. The objectives of this study are to estimate the abundance and occupation patterns of C. guanhumi in this region. Correlations with conservation were discussed. The absolute abundance of crabs in the middle of summer activity was established for an area of 100,000 m2. A smaller area was mapped and divided into sampling units for statistical analyses. We distributed approximately 240 crabs in a forested area of about 3,000 m2 and 150 crabs in grassy areas (90,000 m2). The statistical test of Kruskal-Wallis test showed that there are significant differences between the sizes of the openings of the galleries inside the forest and that located in grassy areas. In the forest, the openings tend to be much larger. Burrows were found at a distance of 150 metres from the channel. The number of galleries was higher in the forested area, although the burrows were more densely grouped in grassy areas. Although C. guanhumi seems to be adjusting well to changes caused by human occupation, small forested areas are more conducive to growth and conservation of this species. PMID:25075466

  11. Fire, grazing history, lichen abundance, and winter distribution of caribou in Alaska's taiga

    USGS Publications Warehouse

    Collins, W.B.; Dale, B.W.; Adams, L.G.; McElwain, D.E.; Joly, Kyle

    2011-01-01

    In the early 1990s the Nelchina Caribou (Rangifer tarandus) Herd (NCH) began a dramatic shift to its current winter range, migrating at least an additional 100 km beyond its historic range. We evaluated the impacts of fire and grazing history on lichen abundance and subsequent use and distribution by the NCH. Historic (prior to 1990) and current (2002) winter ranges of the NCH had similar vascular vegetation, lichen cover (P = 0.491), and fire histories (P = 0.535), but the former range had significantly less forage lichen biomass as a result of grazing by caribou. Biomass of forage lichens was twice as great overall (P = 0.031) and 4 times greater in caribou selected sites on the current range than in the historic range, greatly increasing availability to caribou. Caribou on the current range selected for stands with >20% lichen cover (P < 0.001), greater than 1,250 kg/ha (P < 0.001) forage lichen biomass and stands older than 80 yr postfire (P < 0.001). After fires, forage lichen cover and biomass seldom recovered sufficiently to attract caribou grazing until after ???60 yr, and, as a group, primary forage lichen species did not reach maximum abundance until 180 yr postfire. Recovery following overgrazing can occur much more quickly because lichen cover, albeit mostly fragments, and organic substrates remain present. Our results provide benchmarks for wildlife managers assessing condition of caribou winter range and predicting effects of fires on lichen abundance and caribou distribution. Of our measurements of cover and biomass by species, densities and heights of trees, elevation, slope and aspect, only percentage cover by Cladonia amaurocraea, Cladina rangiferina, Flavocetraria cuculata, and lowbush cranberry (Vaccinium vitis-idaea) were necessary for predicting caribou use of winter range. ?? 2011 The Wildlife Society.

  12. Temporal Variations in the Abundance and Composition of Biofilm Communities Colonizing Drinking Water Distribution Pipes

    PubMed Central

    Kelly, John J.; Minalt, Nicole; Culotti, Alessandro; Pryor, Marsha; Packman, Aaron

    2014-01-01

    Pipes that transport drinking water through municipal drinking water distribution systems (DWDS) are challenging habitats for microorganisms. Distribution networks are dark, oligotrophic and contain disinfectants; yet microbes frequently form biofilms attached to interior surfaces of DWDS pipes. Relatively little is known about the species composition and ecology of these biofilms due to challenges associated with sample acquisition from actual DWDS. We report the analysis of biofilms from five pipe samples collected from the same region of a DWDS in Florida, USA, over an 18 month period between February 2011 and August 2012. The bacterial abundance and composition of biofilm communities within the pipes were analyzed by heterotrophic plate counts and tag pyrosequencing of 16S rRNA genes, respectively. Bacterial numbers varied significantly based on sampling date and were positively correlated with water temperature and the concentration of nitrate. However, there was no significant relationship between the concentration of disinfectant in the drinking water (monochloramine) and the abundance of bacteria within the biofilms. Pyrosequencing analysis identified a total of 677 operational taxonomic units (OTUs) (3% distance) within the biofilms but indicated that community diversity was low and varied between sampling dates. Biofilms were dominated by a few taxa, specifically Methylomonas, Acinetobacter, Mycobacterium, and Xanthomonadaceae, and the dominant taxa within the biofilms varied dramatically between sampling times. The drinking water characteristics most strongly correlated with bacterial community composition were concentrations of nitrate, ammonium, total chlorine and monochloramine, as well as alkalinity and hardness. Biofilms from the sampling date with the highest nitrate concentration were the most abundant and diverse and were dominated by Acinetobacter. PMID:24858562

  13. Socioeconomic and Ecological Factors Influencing Aedes aegypti Prevalence, Abundance, and Distribution in Dhaka, Bangladesh

    PubMed Central

    Dhar-Chowdhury, Parnali; Haque, C. Emdad; Lindsay, Robbin; Hossain, Shakhawat

    2016-01-01

    This study examined household risk factors and prevalence, abundance, and distribution of immature Aedes aegypti and Aedes albopictus, and their association with socioeconomic and ecological factors at urban zonal and household levels in the city of Dhaka, Bangladesh. During the 2011 monsoon, 826 households in 12 randomly selected administrative wards were surveyed for vector mosquitoes. Results revealed that the abundance and distribution of immature Ae. aegypti and Ae. albopictus, and pupae-per-person indices did not vary significantly among the zones with varied socioeconomic status. Of 35 different types of identified wet containers, 30 were infested, and among the 23 pupae-positive container types, nine were defined as the “most productive” for pupae including: disposable plastic containers (12.2% of 550), sealable plastic barrels (12.0%), tires (10.4%), abandoned plastic buckets (9.6%), flower tub and trays (8.5%), refrigerator trays (6.5%), plastic bottles (6.4%), clay pots (4.9%), and water tanks (1.6%). When the function of the containers was assessed, ornamental, discarded, and household repairing and reconstruction-related container categories were found significantly associated with the number of pupae in the households. The purpose of storing water and income variables were significant predictors of possession of containers that were infested by vector mosquitoes. PMID:27022149

  14. The magnetic field topology and chemical abundance distributions of the Ap star HD 32633

    NASA Astrophysics Data System (ADS)

    Silvester, J.; Kochukhov, O.; Wade, G. A.

    2015-10-01

    Previous observations of the Ap star HD 32633 indicated that its magnetic field was unusually complex in nature and could not be characterized by a simple dipolar structure. Here we derive magnetic field maps and chemical abundance distributions for this star using full Stokes vector (Stokes IQUV) high-resolution observations obtained with the ESPaDOnS and Narval spectropolarimeters. Our maps, produced using the INVERS10 magnetic Doppler imaging (MDI) code, show that HD 32633 has a strong magnetic field which features two large regions of opposite polarity but deviates significantly from a pure dipole field. We use a spherical harmonic expansion to characterize the magnetic field and find that the harmonic energy is predominately in the ℓ = 1 and 2 poloidal modes with a small toroidal component. At the same time, we demonstrate that the observed Stokes parameter profiles of HD 32633 cannot be fully described by either a dipolar or dipolar plus quadrupolar field geometry. We compare the magnetic field topology of HD 32633 with other early-type stars for which MDI analyses have been performed, supporting a trend of increasing field complexity with stellar mass. We then compare the magnetic field topology of HD 32633 with derived chemical abundance maps for the elements Mg, Si, Ti, Cr, Fe, Ni and Nd. We find that the iron-peak elements show similar distributions, but we are unable to find a clear correlation between the location of local chemical enhancements or depletions and the magnetic field structure.

  15. Individualistic sensitivities and exposure to climate change explain variation in species' distribution and abundance changes.

    PubMed

    Palmer, Georgina; Hill, Jane K; Brereton, Tom M; Brooks, David R; Chapman, Jason W; Fox, Richard; Oliver, Tom H; Thomas, Chris D

    2015-10-01

    The responses of animals and plants to recent climate change vary greatly from species to species, but attempts to understand this variation have met with limited success. This has led to concerns that predictions of responses are inherently uncertain because of the complexity of interacting drivers and biotic interactions. However, we show for an exemplar group of 155 Lepidoptera species that about 60% of the variation among species in their abundance trends over the past four decades can be explained by species-specific exposure and sensitivity to climate change. Distribution changes were less well predicted, but nonetheless, up to 53% of the variation was explained. We found that species vary in their overall sensitivity to climate and respond to different components of the climate despite ostensibly experiencing the same climate changes. Hence, species have undergone different levels of population "forcing" (exposure), driving variation among species in their national-scale abundance and distribution trends. We conclude that variation in species' responses to recent climate change may be more predictable than previously recognized. PMID:26601276

  16. Individualistic sensitivities and exposure to climate change explain variation in species’ distribution and abundance changes

    PubMed Central

    Palmer, Georgina; Hill, Jane K.; Brereton, Tom M.; Brooks, David R.; Chapman, Jason W.; Fox, Richard; Oliver, Tom H.; Thomas, Chris D.

    2015-01-01

    The responses of animals and plants to recent climate change vary greatly from species to species, but attempts to understand this variation have met with limited success. This has led to concerns that predictions of responses are inherently uncertain because of the complexity of interacting drivers and biotic interactions. However, we show for an exemplar group of 155 Lepidoptera species that about 60% of the variation among species in their abundance trends over the past four decades can be explained by species-specific exposure and sensitivity to climate change. Distribution changes were less well predicted, but nonetheless, up to 53% of the variation was explained. We found that species vary in their overall sensitivity to climate and respond to different components of the climate despite ostensibly experiencing the same climate changes. Hence, species have undergone different levels of population “forcing” (exposure), driving variation among species in their national-scale abundance and distribution trends. We conclude that variation in species’ responses to recent climate change may be more predictable than previously recognized. PMID:26601276

  17. Distribution, abundance, and habitat affinities of the Coastal Plain Swamp Sparrow

    USGS Publications Warehouse

    Beadell, J.; Greenberg, R.; Droege, S.; Royle, J. Andrew

    2003-01-01

    We examined the distribution and abundance of the Coastal Plain Swamp Sparrow (Melospiza georgiana nigrescens) at previously occupied sites and points within potential habitat. We found Swamp Sparrows throughout their formerly documented range except in southern Chesapeake Bay. Swamp Sparrows were most common in the Mullica River region of New Jersey where we detected individuals at 78% of systematically chosen points with a mean count of 4.1 birds/point. The percentages of points with positive detections in. the regions of Delaware River (39%), eastern Delaware Bay (23%), western Delaware Bay (34%), and Tuckahoe River (31%) were lower. The mean count of birds/point was between 0.4 and 0.6 in these regions. A higher resolution Poisson model of relative abundance suggested that the greatest concentrations of Swamp Sparrows occurred not only in the Mullica River area but also along northwestern Delaware Bay. Regression analysis of Swamp Sparrow counts and habitat features identified shrubs (Iva frutescens and Baccharis halimifolia) as a key habitat component. By applying density estimates generated by DISTANCE (Thomas et al. 1998) to the approximate area of potential shrub habitat along Delaware Bay, we estimated that the core population of Coastal Plain Swamp Sparrows was less than 28,000 pairs. We recommend that the Coastal Plain Swamp Sparrow be listed as a subspecies of concern by state and local governments because of its relatively small population size, restricted distribution in the mid-Atlantic region, and narrow habitat requirements.

  18. The distribution, abundance and ecology of the blue coral Heliopora coerulea (Pallas) in the Pacific

    NASA Astrophysics Data System (ADS)

    Zann, Leon P.; Bolton, Lesley

    1985-09-01

    Heliopora coerulea (Alcyonaria, Coenothecalia), widespread since the Cretaceous, is today found in the Indo-Western Pacific between 25° N and 25° S but is uncommon throughout most of its range. Studies around its reported southern and eastern limits of distribution (Great Barrier Reef, Vanuatu, Fiji, Tonga, Western Samoa, Tuvalu, Gilbert Group) suggest that ocean temperature (a lower marginal isotherm of 22°C), duration of larval life-span, prevailing currents, and the geological and climatic history of isolated archipelagoes determine distribution. Heliopora was found to be far more abundant in the equatorial Central Pacific sites (Tuvalu and Gilbert growps) than in the Western Pacific (Great Barrier Reef, New Guinea, Solomon Islands, Ponape, Palau). Heliopora comprised up to 16% of beach sediments in Tuvalu atolls, and was the dominant coral (averaging 40% of substrate between 6 m and 10 m on reef slopes) in coral assemblages on Tarawa Atoll. From ecological studies in Tarawa it is suggested that competition from the more specialized and “aggressive” Scleractinia (particularly Acroporidae and Faviidae) is the major factor limiting abundance in the equatorial Western Pacific.

  19. Socioeconomic and Ecological Factors Influencing Aedes aegypti Prevalence, Abundance, and Distribution in Dhaka, Bangladesh.

    PubMed

    Dhar-Chowdhury, Parnali; Haque, C Emdad; Lindsay, Robbin; Hossain, Shakhawat

    2016-06-01

    This study examined household risk factors and prevalence, abundance, and distribution of immature Aedes aegypti and Aedes albopictus, and their association with socioeconomic and ecological factors at urban zonal and household levels in the city of Dhaka, Bangladesh. During the 2011 monsoon, 826 households in 12 randomly selected administrative wards were surveyed for vector mosquitoes. Results revealed that the abundance and distribution of immature Ae. aegypti and Ae. albopictus, and pupae-per-person indices did not vary significantly among the zones with varied socioeconomic status. Of 35 different types of identified wet containers, 30 were infested, and among the 23 pupae-positive container types, nine were defined as the "most productive" for pupae including: disposable plastic containers (12.2% of 550), sealable plastic barrels (12.0%), tires (10.4%), abandoned plastic buckets (9.6%), flower tub and trays (8.5%), refrigerator trays (6.5%), plastic bottles (6.4%), clay pots (4.9%), and water tanks (1.6%). When the function of the containers was assessed, ornamental, discarded, and household repairing and reconstruction-related container categories were found significantly associated with the number of pupae in the households. The purpose of storing water and income variables were significant predictors of possession of containers that were infested by vector mosquitoes. PMID:27022149

  20. Community- Weighted Mean Plant Traits Predict Small Scale Distribution of Insect Root Herbivore Abundance

    PubMed Central

    Jeltsch, Florian; Wurst, Susanne

    2015-01-01

    Small scale distribution of insect root herbivores may promote plant species diversity by creating patches of different herbivore pressure. However, determinants of small scale distribution of insect root herbivores, and impact of land use intensity on their small scale distribution are largely unknown. We sampled insect root herbivores and measured vegetation parameters and soil water content along transects in grasslands of different management intensity in three regions in Germany. We calculated community-weighted mean plant traits to test whether the functional plant community composition determines the small scale distribution of insect root herbivores. To analyze spatial patterns in plant species and trait composition and insect root herbivore abundance we computed Mantel correlograms. Insect root herbivores mainly comprised click beetle (Coleoptera, Elateridae) larvae (43%) in the investigated grasslands. Total insect root herbivore numbers were positively related to community-weighted mean traits indicating high plant growth rates and biomass (specific leaf area, reproductive- and vegetative plant height), and negatively related to plant traits indicating poor tissue quality (leaf C/N ratio). Generalist Elaterid larvae, when analyzed independently, were also positively related to high plant growth rates and furthermore to root dry mass, but were not related to tissue quality. Insect root herbivore numbers were not related to plant cover, plant species richness and soil water content. Plant species composition and to a lesser extent plant trait composition displayed spatial autocorrelation, which was not influenced by land use intensity. Insect root herbivore abundance was not spatially autocorrelated. We conclude that in semi-natural grasslands with a high share of generalist insect root herbivores, insect root herbivores affiliate with large, fast growing plants, presumably because of availability of high quantities of food. Affiliation of insect root

  1. Community-Weighted Mean Plant Traits Predict Small Scale Distribution of Insect Root Herbivore Abundance.

    PubMed

    Sonnemann, Ilja; Pfestorf, Hans; Jeltsch, Florian; Wurst, Susanne

    2015-01-01

    Small scale distribution of insect root herbivores may promote plant species diversity by creating patches of different herbivore pressure. However, determinants of small scale distribution of insect root herbivores, and impact of land use intensity on their small scale distribution are largely unknown. We sampled insect root herbivores and measured vegetation parameters and soil water content along transects in grasslands of different management intensity in three regions in Germany. We calculated community-weighted mean plant traits to test whether the functional plant community composition determines the small scale distribution of insect root herbivores. To analyze spatial patterns in plant species and trait composition and insect root herbivore abundance we computed Mantel correlograms. Insect root herbivores mainly comprised click beetle (Coleoptera, Elateridae) larvae (43%) in the investigated grasslands. Total insect root herbivore numbers were positively related to community-weighted mean traits indicating high plant growth rates and biomass (specific leaf area, reproductive- and vegetative plant height), and negatively related to plant traits indicating poor tissue quality (leaf C/N ratio). Generalist Elaterid larvae, when analyzed independently, were also positively related to high plant growth rates and furthermore to root dry mass, but were not related to tissue quality. Insect root herbivore numbers were not related to plant cover, plant species richness and soil water content. Plant species composition and to a lesser extent plant trait composition displayed spatial autocorrelation, which was not influenced by land use intensity. Insect root herbivore abundance was not spatially autocorrelated. We conclude that in semi-natural grasslands with a high share of generalist insect root herbivores, insect root herbivores affiliate with large, fast growing plants, presumably because of availability of high quantities of food. Affiliation of insect root

  2. The abundance properties of nearby late-type galaxies. II. The relation between abundance distributions and surface brightness profiles

    SciTech Connect

    Pilyugin, L. S.; Grebel, E. K.; Zinchenko, I. A.; Kniazev, A. Y. E-mail: grebel@ari.uni-heidelberg.de E-mail: akniazev@saao.ac.za

    2014-12-01

    The relations between oxygen abundance and disk surface brightness (OH–SB relation) in the infrared W1 band are examined for nearby late-type galaxies. The oxygen abundances were presented in Paper I. The photometric characteristics of the disks are inferred here using photometric maps from the literature through bulge-disk decomposition. We find evidence that the OH–SB relation is not unique but depends on the galactocentric distance r (taken as a fraction of the optical radius R{sub 25}) and on the properties of a galaxy: the disk scale length h and the morphological T-type. We suggest a general, four-dimensional OH–SB relation with the values r, h, and T as parameters. The parametric OH–SB relation reproduces the observed data better than a simple, one-parameter relation; the deviations resulting when using our parametric relation are smaller by a factor of ∼1.4 than that of the simple relation. The influence of the parameters on the OH–SB relation varies with galactocentric distance. The influence of the T-type on the OH–SB relation is negligible at the centers of galaxies and increases with galactocentric distance. In contrast, the influence of the disk scale length on the OH–SB relation is at a maximum at the centers of galaxies and decreases with galactocentric distance, disappearing at the optical edges of galaxies. Two-dimensional relations can be used to reproduce the observed data at the optical edges of the disks and at the centers of the disks. The disk scale length should be used as a second parameter in the OH–SB relation at the center of the disk while the morphological T-type should be used as a second parameter in the relation at optical edge of the disk. The relations between oxygen abundance and disk surface brightness in the optical B and infrared K bands at the center of the disk and at optical edge of the disk are also considered. The general properties of the abundance–surface brightness relations are similar for the

  3. The plankton community in Norwegian coastal waters—abundance, composition, spatial distribution and diel variation

    NASA Astrophysics Data System (ADS)

    Bratbak, Gunnar; Jacquet, Stéphan; Larsen, Aud; Pettersson, Lasse H.; Sazhin, Andrey F.; Thyrhaug, Runar

    2011-09-01

    The purpose of the present study was to explore the composition and variation of the pico-, nano- and micro-plankton communities in Norwegian coastal waters and Skagerrak, and the co-occurrence of bacteria and viruses. Samples were collected along three cruise transects from Jæren, Lista and Oksøy on the south coast of Norway and into the North Sea and Skagerrak. We also followed a drifting buoy for 55 h in Skagerrak in order to observe diel variations. Satellite ocean color images (SeaWiFS) of the chlorophyll a (chl a) distribution compared favorably to in situ measurements in open waters, while closer to the shore remote sensing chl a data was overestimated compared to the in situ data. Using light microscopy, we identified 49 micro- and 15 nanoplankton sized phototrophic forms as well as 40 micro- and 12 nanoplankton sized heterotrophic forms. The only picoeukaryote (0.2-2.0 μm) we identified was Resultor micron (Pedinophyceae ). Along the transects a significant variation in the distribution and abundance of different plankton forms were observed, with Synechococcus spp and autotrophic picoeukaryotes as the most notable examples. There was no correlation between viruses and chl a, but between viruses and bacteria, and between viruses and some of the phytoplankton groups, especially the picoeukaryotes. Moreover, there was a negative correlation between nutrients and small viruses (Low Fluorescent Viruses) but a positive correlation between nutrients and large viruses (High Fluorescent Viruses). The abundance of autotrophic picoplankton, bacteria and viruses showed a diel variation in surface waters with higher values around noon and late at night and lower values in the evening. Synechococcus spp were found at 20 m depth 25-45 nautical miles from shore apparently forming a bloom that stretched out for more than 100 nautical miles from Skagerrak and up the south west coast of Norway. The different methods used for assessing abundance, distribution and

  4. The global distribution, abundance, and stability of SO2 on Io

    USGS Publications Warehouse

    McEwen, A.S.; Johnson, T.V.; Matson, D.L.; Soderblom, L.A.

    1988-01-01

    Sulfur dioxide distribution and abundances, bolometric hemispheric albedos, and passive surface temperatures on Io are modeled and mapped globally from Voyager multispectral mosaics, Earth-based spectra, and photometric descriptions. Photometric models indicate global average values for regolith porosity of 75-95% and macroscopic roughness with a mean slope angle of ~30??. Abundances of SO2 suggested by observations at uv-visible wavelengths and at 4.08 ??m are partially reconciled by intimate-mixing models; 30-50% SO2 coverage of the integral disk is indicated. Three major spectral end members, with continuous mixing, are recognized from the Voyager multispectral mosaics; one of these end members is identified as SO2. Intimate-mixing models with the three spectal end members are used to produce abundance maps for the optical surface; ~30% of Io's total optical surface consists of SO2. The SO2 is concentrated in the bright equatorial band and is relatively deficient in the region of Pele-type volcanic reuptions (long 240??-360??) and the polar regions. Temperatures are computed to vary over a 40??K range, at the same illumination angle, according to variations in surface bolometric hemispheric albedo. The brightest (and locally coldest) areas correspond to areas rich in SO2 and are concentrated in an equatorial band (??30?? lat), but many small cold patches occur elsewhere. These cold patches have radiative equilibrium temperatures ???120??K at the subsolar point, resulting in SO2 saturation vapor pressures ???10-8 bar. Midlatitude areas and the region of Pele-type plume eruptions are generally warmer (due to lower albedos). These results for surface temperatures and SO2 abundances and distribution support the regional coldtrapping model for the surface and atmospheric SO2 presented by F.P. Fanale, W.B. Banerdt, L.S. Elson, T.V. Johnson, and R.W. Zurek (1982, In Satellites of Jupiter (D. Morrison, Ed.), pp. 756-781, Univ. of Arizona Press, Tucson), although the

  5. Predictive modelling of habitat selection by marine predators with respect to the abundance and depth distribution of pelagic prey.

    PubMed

    Boyd, Charlotte; Castillo, Ramiro; Hunt, George L; Punt, André E; VanBlaricom, Glenn R; Weimerskirch, Henri; Bertrand, Sophie

    2015-11-01

    Understanding the ecological processes that underpin species distribution patterns is a fundamental goal in spatial ecology. However, developing predictive models of habitat use is challenging for species that forage in marine environments, as both predators and prey are often highly mobile and difficult to monitor. Consequently, few studies have developed resource selection functions for marine predators based directly on the abundance and distribution of their prey. We analysed contemporaneous data on the diving locations of two seabird species, the shallow-diving Peruvian Booby (Sula variegata) and deeper diving Guanay Cormorant (Phalacrocorax bougainvilliorum), and the abundance and depth distribution of their main prey, Peruvian anchoveta (Engraulis ringens). Based on this unique data set, we developed resource selection functions to test the hypothesis that the probability of seabird diving behaviour at a given location is a function of the relative abundance of prey in the upper water column. For both species, we show that the probability of diving behaviour is mostly explained by the distribution of prey at shallow depths. While the probability of diving behaviour increases sharply with prey abundance at relatively low levels of abundance, support for including abundance in addition to the depth distribution of prey is weak, suggesting that prey abundance was not a major factor determining the location of diving behaviour during the study period. The study thus highlights the importance of the depth distribution of prey for two species of seabird with different diving capabilities. The results complement previous research that points towards the importance of oceanographic processes that enhance the accessibility of prey to seabirds. The implications are that locations where prey is predictably found at accessible depths may be more important for surface foragers, such as seabirds, than locations where prey is predictably abundant. Analysis of the relative

  6. Artemia parthenogenetica (Branchiopoda: Anostraca) from the Large Aral Sea: Abundance, distribution, population structure and cyst production

    NASA Astrophysics Data System (ADS)

    Arashkevich, Elena G.; Sapozhnikov, P. V.; Soloviov, K. A.; Kudyshkin, T. V.; Zavialov, P. O.

    2009-03-01

    The brine shrimp Artemia parthenogenetica appeared in the Large Aral Sea (Central Asia) in 1998 when mineralization reached 63 ppt. Data on Artemia abundance and biomass, along with temperature and salinity measurements were collected in the western basin during 2002-2006, primarily in the autumn. During the study period, population density grew progressively, both in terms of number, from 250 to 1260 individuals per m 3, and in terms of biomass, from 0.3 to 1.3 g per m 3. In 2005, the population density and spatial distribution in the different parts of the sea (western and eastern basins and strait) was assessed. The horizontal distribution of the Artemia population was uniform in the deep central part of the western basin, although the distribution was quite patchy in the shallow coastal zone. Depth habitat of Artemia was restricted to the upper 20-25 m of depth, as the oxygen depletion and formation of anoxic layer prevented distribution of Artemia to the deeper waters. In autumn, all females reproduced oviparously, with an average clutch size of 30-35 eggs per female. The number of eggs in a clutch was positively correlated with female body length ( r2 = 0.36-0.44).

  7. Distribution and Abundance of Necrophagous Flies (Diptera: Calliphoridae and Sarcophagidae) in Maranhão, Northeastern Brazil

    PubMed Central

    Pereira de Sousa, José Roberto; Carvalho-Filho, Fernando da Silva; Esposito, Maria Cristina

    2015-01-01

    This study aimed at surveying the local calliphorid and sarcophagid species in Maranhão State (Brazil) to determine their distribution and abundance, as well as the distribution of exotic Chrysomya species. In total, 18,128 calliphorid specimens were collected, distributed in 7 genera and 14 species. The species Hemilucilia semidiaphana (Rondani, 1850) and Paralucilia paraensis (Mello, 1969) were new state records. Chrysomya albiceps (Wiedemann, 1819) and Cochliomyia macellaria (F., 1775) were the most abundant species, and the exotic species of Chrysomya together contributed more than 50% of total blow fly abundance. The abundance distribution of the calliphorid community conformed to a log series model, characterized by a steep curve that reflects an assemblage with a high degree of dominance. For the Sarcophagidae, a total of 14,810 specimens were collected and distributed in 15 genera, 11 subgenera, and 52 species. Tricharaea (Sarcophagula) occidua (F., 1794) and Peckia (Sarcodexia) lambens (Wiedemann, 1830) were the most abundant species. The abundance distribution of the species followed a log normal model, with a gentler slope, consistent with a more uniform community. The cumulative species curve for the sarcophagids did not reach the asymptote. Forty-three sarcophagid species were new state records and 22 were new records for the Brazilian northeast, which emphasizes the need for a continued survey in this region. PMID:26078304

  8. Distribution, abundance and benthic-pelagic coupling of suspended hydroids on Georges Bank1, 2

    NASA Astrophysics Data System (ADS)

    Concelman, Stephanie; Bollens, Stephen M.; Sullivan, Barbara K.; Madin, Laurence P.; Horgan, Erich; Butler, Mari; van Keuren, Donna

    Clytia spp. hydroids (Phylum Cnidaria), typically attached to a substrate during their asexual, polyp stage, have been found in significant numbers within the mesozooplankton on Georges Bank, North Atlantic Ocean. We examined unpublished historical records of the 1939-1941 cruises of the R/V Atlantis and obtained samples at four-study sites on Georges Bank in June/July 1995 in an attempt to (1) quantify the planktonic and benthic distributions of hydroids on Georges Bank, and (2) determine the coupling between benthic and pelagic habitats of this population. We found that planktonic hydroids have a patchy distribution, varying both spatially and temporally (most abundant in summer months, absent in winter). In 1939-1941 the planktonic hydroids were most broadly distributed following a spring (1940) with strong wind events; hydroids were absent from all samples in 1941. In 1995 we found the highest abundance of planktonic Clytia spp. hydroids (6213.5±1343.6 hydranths m -3) in the central crest of the bank, "downstream" in the Georges Bank circulation pattern from sites along the northeast peak of the Bank where large populations of benthic Clytia spp. hydroids were found (up to 6465 hydranths m -2). Our plankton sampling did not show significant numbers of hydroids in the water column at the Northeast peak sites, indicating that large numbers of planktonic hydroids are not being introduced into the Bank's circulation patterns from off-Bank sites to the northeast (e.g. Scotian shelf). The source population for planktonic hydroids found in the central region of the Bank is most likely the benthic habitats on the northeast peak of the Bank. We hypothesize, and our limited data suggest, that hydroids are detached from the benthos by storm action or other disturbance, advected clockwise with the mean residual circulation, and concentrated and retained in the central, low-advective region of the Bank.

  9. Testing methods for using high-resolution satellite imagery to monitor polar bear abundance and distribution

    USGS Publications Warehouse

    LaRue, Michelle A.; Stapleton, Seth P.; Porter, Claire; Atkinson, Stephen N.; Atwood, Todd C.; Dyck, Markus; Lecomte, Nicolas

    2015-01-01

    High-resolution satellite imagery is a promising tool for providing coarse information about polar species abundance and distribution, but current applications are limited. With polar bears (Ursus maritimus), the technique has only proven effective on landscapes with little topographic relief that are devoid of snow and ice, and time-consuming manual review of imagery is required to identify bears. Here, we evaluated mechanisms to further develop methods for satellite imagery by examining data from Rowley Island, Canada. We attempted to automate and expedite detection via a supervised spectral classification and image differencing to expedite image review. We also assessed what proportion of a region should be sampled to obtain reliable estimates of density and abundance. Although the spectral signature of polar bears differed from nontarget objects, these differences were insufficient to yield useful results via a supervised classification process. Conversely, automated image differencing—or subtracting one image from another—correctly identified nearly 90% of polar bear locations. This technique, however, also yielded false positives, suggesting that manual review will still be required to confirm polar bear locations. On Rowley Island, bear distribution approximated a Poisson distribution across a range of plot sizes, and resampling suggests that sampling >50% of the site facilitates reliable estimation of density (CV <15%). Satellite imagery may be an effective monitoring tool in certain areas, but large-scale applications remain limited because of the challenges in automation and the limited environments in which the method can be effectively applied. Improvements in resolution may expand opportunities for its future uses.

  10. Relationships beetween the regional distribution of carabid beetles ( Coleoptera, Carabidae) and the abundance of their potential prey

    NASA Astrophysics Data System (ADS)

    Guillemain, Matthieu; Loreau, Michel; Daufresne, Tanguy

    We studied regional variation in abundance of carabid beetles in relation to both abiotic factors and prey availability in 19 forest sites, with a focus on the relationship between the distributions of the carabid beetle Abax ater Villers and its prey, earthworms. No significant correlation was found between the abundance of Abax ater and any of the abiotic factors considered. On the other had, litter thickness was strongly associated with the composition and structure of the whole carabid community: an increase in litter thickness was accompanied by a decrease in both total carabid abundance and carabid species richnes, and by an increase in the proportion of forest species. The relationship between the regional distributions of abundance of carabid beetles and their potential prev was very different for soil-dwelling and litter-dwelling prey. There was a significant pattern of association between low soil prey abundance and low carabid abundance, which suggests that carabid abundance is partly controlled by prey numbers in the soil. On the other hand, there was a significant pattern of association between high prey density per volume of litter and low Abax ater abundance, thus showing a negative relationship between the abundance of this species and prey density in the litter. We propose two complementary hypotheses to explain this pattern: prey depletion by predation in the litter, and biased sampling of carabids due to differential mobility. The prey depletion hypothesis considers that soil acts as a refuge from predation, so that prey numbers in the soil control carabid abundance, while dominant carabids in turn deplete prey and control their abundance in the litter. This hypothesis suggests a complex relationship between the abundances of carabids and their prey.

  11. Evolutionary dynamics of selfish DNA explains the abundance distribution of genomic subsequences

    PubMed Central

    Sheinman, Michael; Ramisch, Anna; Massip, Florian; Arndt, Peter F.

    2016-01-01

    Since the sequencing of large genomes, many statistical features of their sequences have been found. One intriguing feature is that certain subsequences are much more abundant than others. In fact, abundances of subsequences of a given length are distributed with a scale-free power-law tail, resembling properties of human texts, such as Zipf’s law. Despite recent efforts, the understanding of this phenomenon is still lacking. Here we find that selfish DNA elements, such as those belonging to the Alu family of repeats, dominate the power-law tail. Interestingly, for the Alu elements the power-law exponent increases with the length of the considered subsequences. Motivated by these observations, we develop a model of selfish DNA expansion. The predictions of this model qualitatively and quantitatively agree with the empirical observations. This allows us to estimate parameters for the process of selfish DNA spreading in a genome during its evolution. The obtained results shed light on how evolution of selfish DNA elements shapes non-trivial statistical properties of genomes. PMID:27488939

  12. Evolutionary dynamics of selfish DNA explains the abundance distribution of genomic subsequences.

    PubMed

    Sheinman, Michael; Ramisch, Anna; Massip, Florian; Arndt, Peter F

    2016-01-01

    Since the sequencing of large genomes, many statistical features of their sequences have been found. One intriguing feature is that certain subsequences are much more abundant than others. In fact, abundances of subsequences of a given length are distributed with a scale-free power-law tail, resembling properties of human texts, such as Zipf's law. Despite recent efforts, the understanding of this phenomenon is still lacking. Here we find that selfish DNA elements, such as those belonging to the Alu family of repeats, dominate the power-law tail. Interestingly, for the Alu elements the power-law exponent increases with the length of the considered subsequences. Motivated by these observations, we develop a model of selfish DNA expansion. The predictions of this model qualitatively and quantitatively agree with the empirical observations. This allows us to estimate parameters for the process of selfish DNA spreading in a genome during its evolution. The obtained results shed light on how evolution of selfish DNA elements shapes non-trivial statistical properties of genomes. PMID:27488939

  13. Microbial distribution and abundance in the digestive system of five shipworm species (Bivalvia: Teredinidae).

    PubMed

    Betcher, Meghan A; Fung, Jennifer M; Han, Andrew W; O'Connor, Roberta; Seronay, Romell; Concepcion, Gisela P; Distel, Daniel L; Haygood, Margo G

    2012-01-01

    Marine bivalves of the family Teredinidae (shipworms) are voracious consumers of wood in marine environments. In several shipworm species, dense communities of intracellular bacterial endosymbionts have been observed within specialized cells (bacteriocytes) of the gills (ctenidia). These bacteria are proposed to contribute to digestion of wood by the host. While the microbes of shipworm gills have been studied extensively in several species, the abundance and distribution of microbes in the digestive system have not been adequately addressed. Here we use Fluorescence In-Situ Hybridization (FISH) and laser scanning confocal microscopy with 16S rRNA directed oligonucleotide probes targeting all domains, domains Bacteria and Archaea, and other taxonomic groups to examine the digestive microbiota of 17 specimens from 5 shipworm species (Bankia setacea, Lyrodus pedicellatus, Lyrodus massa, Lyrodus sp. and Teredo aff. triangularis). These data reveal that the caecum, a large sac-like appendage of the stomach that typically contains large quantities of wood particles and is considered the primary site of wood digestion, harbors only very sparse microbial populations. However, a significant number of bacterial cells were observed in fecal pellets within the intestines. These results suggest that due to low abundance, bacteria in the caecum may contribute little to lignocellulose degradation. In contrast, the comparatively high population density of bacteria in the intestine suggests a possible role for intestinal bacteria in the degradation of lignocellulose. PMID:23028923

  14. Microbial Distribution and Abundance in the Digestive System of Five Shipworm Species (Bivalvia: Teredinidae)

    PubMed Central

    Betcher, Meghan A.; Fung, Jennifer M.; Han, Andrew W.; O’Connor, Roberta; Seronay, Romell; Concepcion, Gisela P.; Distel, Daniel L.; Haygood, Margo G.

    2012-01-01

    Marine bivalves of the family Teredinidae (shipworms) are voracious consumers of wood in marine environments. In several shipworm species, dense communities of intracellular bacterial endosymbionts have been observed within specialized cells (bacteriocytes) of the gills (ctenidia). These bacteria are proposed to contribute to digestion of wood by the host. While the microbes of shipworm gills have been studied extensively in several species, the abundance and distribution of microbes in the digestive system have not been adequately addressed. Here we use Fluorescence In-Situ Hybridization (FISH) and laser scanning confocal microscopy with 16S rRNA directed oligonucleotide probes targeting all domains, domains Bacteria and Archaea, and other taxonomic groups to examine the digestive microbiota of 17 specimens from 5 shipworm species (Bankia setacea, Lyrodus pedicellatus, Lyrodus massa, Lyrodus sp. and Teredo aff. triangularis). These data reveal that the caecum, a large sac-like appendage of the stomach that typically contains large quantities of wood particles and is considered the primary site of wood digestion, harbors only very sparse microbial populations. However, a significant number of bacterial cells were observed in fecal pellets within the intestines. These results suggest that due to low abundance, bacteria in the caecum may contribute little to lignocellulose degradation. In contrast, the comparatively high population density of bacteria in the intestine suggests a possible role for intestinal bacteria in the degradation of lignocellulose. PMID:23028923

  15. Estimating lake-wide abundance of spawning-phase sea lampreys (Petromyzon marinus) in the Great Lakes: extrapolating from sampled streams using regression models

    USGS Publications Warehouse

    Mullett, Katherine M.; Heinrich, John W.; Adams, Jean V.; Young, Robert J.; Henson, Mary P.; McDonald, Rodney B.; Fodale, Michael F.

    2003-01-01

    Lake-wide abundance of spawning-phase sea lampreys (Petromyzon marinus) can be used as one means to evaluate sea lamprey control efforts in the Great Lakes. Lake-wide abundance in each Great Lake was the sum of estimates for all streams thought to contribute substantial numbers of sea lampreys. A subset of these streams was sampled with traps and mark-recapture studies were conducted. When sea lampreys were captured in traps, but no mark-recapture study was conducted, abundance was estimated from a relation between trap catch and mark-recapture estimates observed in other years. In non-sampled streams, a regression model that used stream drainage area, geographic region, larval sea lamprey, production potential, the number of years since the last lampricide treatment, and spawning year was used to predict abundance of spawning-phase sea lampreys. The combination of estimates from sampled and non-sampled streams provided a 20-year time series of spawning-phase sea lamprey abundance estimates in the Great Lakes.

  16. Latitudinal and bathymetric patterns in the distribution and abundance of mesopelagic fish in the Scotia Sea

    NASA Astrophysics Data System (ADS)

    Collins, Martin A.; Stowasser, Gabriele; Fielding, Sophie; Shreeve, Rachel; Xavier, José C.; Venables, Hugh J.; Enderlein, Peter; Cherel, Yves; Van de Putte, Anton

    2012-01-01

    Mesopelagic fish are a key component of the pelagic ecosystem throughout the world's oceans. Opening and closing nets were used to investigate patterns in the distribution and abundance of mesopelagic fish from the surface to 1000 m on a series of transects across the Scotia Sea from the ice-edge to the Antarctic Polar Front. A total of 141 non-target net hauls were undertaken during three cruises (Nov 2006, Jan 2008 and Mar 2009), with 7852 teleost fish captured, representing 43 species in 17 families. A further 1517 fish were caught in targeted net hauls. The dominant families were the Myctophidae (6961 specimens; 21 species) and Bathylagidae (1467 specimens; 4 species). Few fish were caught in the upper 400 m during daylight, which was attributed to a combination of net avoidance and diurnal vertical migration. Species composition was linked to depth and location and was closely associated with oceanographic features. Diversity was lowest in cold water at the most southerly stations, which were dominated by Electrona antarctica, Gymnoscopelus braueri and Bathylagus antarcticus. Further north, diversity increased with the addition of species such as Krefftichthys anderssoni, Protomyctophum bolini and Electrona carlsbergi. The depth integrated biomass of myctophids was similar across the latitudinal transect and produced an estimate of 4.5 million tonnes in the Scotia Sea. Bathylagids were patchily distributed, but were abundant in the lower mesopelagic zone (>400 m) and are potentially significant zooplankton consumers. Given the biomass of the myctophids and bathylagids coupled with the vertical migrations of many species, these fish are likely to play a significant role in carbon export from the surface waters to the deep ocean.

  17. The initial abundance and distribution of 92Nb in the Solar System

    NASA Astrophysics Data System (ADS)

    Iizuka, Tsuyoshi; Lai, Yi-Jen; Akram, Waheed; Amelin, Yuri; Schönbächler, Maria

    2016-04-01

    Niobium-92 is an extinct proton-rich nuclide, which decays to 92Zr with a half-life of 37 Ma. This radionuclide potentially offers a unique opportunity to determine the timescales of early Solar System processes and the site(s) of nucleosynthesis for p-nuclei, once its initial abundance and distribution in the Solar System are well established. Here we present internal Nb-Zr isochrons for three basaltic achondrites with known U-Pb ages: the angrite NWA 4590, the eucrite Agoult, and the ungrouped achondrite Ibitira. Our results show that the relative Nb-Zr isochron ages of the three meteorites are consistent with the time intervals obtained from the Pb-Pb chronometer for pyroxene and plagioclase, indicating that 92Nb was homogeneously distributed among their source regions. The Nb-Zr and Pb-Pb data for NWA 4590 yield the most reliable and precise reference point for anchoring the Nb-Zr chronometer to the absolute timescale: an initial 92Nb/93Nb ratio of (1.4 ± 0.5) ×10-5 at 4557.93 ± 0.36 Ma, which corresponds to a 92Nb/93Nb ratio of (1.7 ± 0.6) ×10-5 at the time of the Solar System formation. On the basis of this new initial ratio, we demonstrate the capability of the Nb-Zr chronometer to date early Solar System objects including troilite and rutile, such as iron and stony-iron meteorites. Furthermore, we estimate a nucleosynthetic production ratio of 92Nb to the p-nucleus 92Mo between 0.0015 and 0.035. This production ratio, together with the solar abundances of other p-nuclei with similar masses, can be best explained if these light p-nuclei were primarily synthesized by photodisintegration reactions in Type Ia supernovae.

  18. The abundance and spatial distribution of ultra-diffuse galaxies in nearby galaxy clusters

    NASA Astrophysics Data System (ADS)

    van der Burg, Remco F. J.; Muzzin, Adam; Hoekstra, Henk

    2016-05-01

    Recent observations have highlighted a significant population of faint but large (reff> 1.5 kpc) galaxies in the Coma cluster. The origin of these ultra diffuse galaxies (UDGs) remains puzzling, as the interpretation of these observational results has been hindered by the (partly) subjective selection of UDGs, and the limited study of only the Coma (and some examples in the Virgo-) cluster. In this paper we extend the study of UDGs using eight clusters in the redshift range 0.044 abundance of the UDGs we can detect increases with cluster mass, reaching ~200 in typical haloes of M200 ≃ 1015M⊙. For the ensemble cluster we measure the size distribution of UDGs, their colour-magnitude distribution, and their completeness-corrected radial density distribution within the clusters. The morphologically-selected cluster UDGs have colours consistent with the cluster red sequence, and have a steep size distribution that, at a given surface brightness, declines as n [ dex-1 ] ∝ reff-3.4 ± 0.2. Their radial distribution is significantly steeper than NFW in the outskirts, and is significantly shallower in the inner parts. We find them to follow the same radial distribution as the more massive quiescent galaxies in the clusters, except within the core region of r ≲ 0.15 × R200 (or ≲ 300 kpc). Within this region the number density of UDGs drops and is consistent with zero. These diffuse galaxies can only resist tidal forces down to this cluster-centric distance if they are highly centrally dark-matter dominated. The observation that the radial distribution of more compact dwarf galaxies (reff< 1.0 kpc) with similar luminosities follows the same distribution as the UDGs, but exist down to a smaller distance of 100 kpc from the

  19. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress.

    PubMed

    Candat, Adrien; Paszkiewicz, Gaël; Neveu, Martine; Gautier, Romain; Logan, David C; Avelange-Macherel, Marie-Hélène; Macherel, David

    2014-07-01

    Late embryogenesis abundant (LEA) proteins are hydrophilic, mostly intrinsically disordered proteins, which play major roles in desiccation tolerance. In Arabidopsis thaliana, 51 genes encoding LEA proteins clustered into nine families have been inventoried. To increase our understanding of the yet enigmatic functions of these gene families, we report the subcellular location of each protein. Experimental data highlight the limits of in silico predictions for analysis of subcellular localization. Thirty-six LEA proteins localized to the cytosol, with most being able to diffuse into the nucleus. Three proteins were exclusively localized in plastids or mitochondria, while two others were found dually targeted to these organelles. Targeting cleavage sites could be determined for five of these proteins. Three proteins were found to be endoplasmic reticulum (ER) residents, two were vacuolar, and two were secreted. A single protein was identified in pexophagosomes. While most LEA protein families have a unique subcellular localization, members of the LEA_4 family are widely distributed (cytosol, mitochondria, plastid, ER, and pexophagosome) but share the presence of the class A α-helix motif. They are thus expected to establish interactions with various cellular membranes under stress conditions. The broad subcellular distribution of LEA proteins highlights the requirement for each cellular compartment to be provided with protective mechanisms to cope with desiccation or cold stress. PMID:25005920

  20. The Distribution and Abundance of Mercury Methylating Microorganisms in Mid-Atlantic Wetlands

    NASA Astrophysics Data System (ADS)

    Santillan, E. F. U.; Gilmour, C. C.; Schwartz, G.; Christensen, G. A.; King, A. J.; Elias, D. A.

    2015-12-01

    The discovery of the genes responsible for microbial methylmercury production, hgcAB, has led to the identification of novel Hg methylators with diverse metabolisms including Fe and SO42- reducing bacteria, syntrophs, and methanogens. We recently developed DNA probes for hgcA in each group of methylators: Deltaproteobacteria, Firmicutes, and Archaea [Christensen, 2015]. In this study, we use the probes to determine quantity and distribution of hgcA+ organisms in mid-Atlantic marshes and sediments, and in Hg-contaminated wetland soils. We also analyze hgcA distribution over a 28-day soil slurry experiment designed to evaluate the impact of activated carbon on Hg methylation and demethylation [Gilmour, 2015]. Initial soils show Deltaproteobacteria comprise most hgcA+ organisms. Methanogens encompass >45% of the remaining methylators. The addition of SO42- to induce SO42- reducing conditions in slurries caused the number of hgcA+ Deltaproteobacteria to increase and the number of hgcA+ methanogens to decrease to >32%. In soils and slurries, Firmicutes were below detection, suggesting our Firmicute primers are either unrepresentative in natural samples, or that hgcA+ Firmicutes are rare. This observation is interesting as Firmicutes include organisms with divergent metabolisms, and their role in environmental methylation is still unknown. Slurries also show no correlation between hgcA abundance and Hg concentrations. We now plan to explore how hgcA abundance relates to Hg-methylation and electron acceptor availability. Our results offer initial insights into the natural distribution of hgcA, supporting the idea that the distribution of different methylators is related to electron acceptors and redox chemistry. Christensen, G., Wymore, AM, King, A, Pdar, M, Hurt Jur, RA, Santillan, EFU, Gilmour, CC, Brandt, CC, Brown, SD, Palumbo, AV, Elias, DA (2015), A Study of Mercury Methylation Genetics: Qualitative and Quantitative Analysis of hgcAB in Pure Culture, paper presented

  1. Abundance and Distribution of Dimethylsulfoniopropionate Degradation Genes and the Corresponding Bacterial Community Structure at Dimethyl Sulfide Hot Spots in the Tropical and Subtropical Pacific Ocean

    PubMed Central

    Suzuki, Shotaro; Omori, Yuko; Wong, Shu-Kuan; Ijichi, Minoru; Kaneko, Ryo; Kameyama, Sohiko; Tanimoto, Hiroshi; Hamasaki, Koji

    2015-01-01

    Dimethylsulfoniopropionate (DMSP) is mainly produced by marine phytoplankton but is released into the microbial food web and degraded by marine bacteria to dimethyl sulfide (DMS) and other products. To reveal the abundance and distribution of bacterial DMSP degradation genes and the corresponding bacterial communities in relation to DMS and DMSP concentrations in seawater, we collected surface seawater samples from DMS hot spot sites during a cruise across the Pacific Ocean. We analyzed the genes encoding DMSP lyase (dddP) and DMSP demethylase (dmdA), which are responsible for the transformation of DMSP to DMS and DMSP assimilation, respectively. The averaged abundance (±standard deviation) of these DMSP degradation genes relative to that of the 16S rRNA genes was 33% ± 12%. The abundances of these genes showed large spatial variations. dddP genes showed more variation in abundances than dmdA genes. Multidimensional analysis based on the abundances of DMSP degradation genes and environmental factors revealed that the distribution pattern of these genes was influenced by chlorophyll a concentrations and temperatures. dddP genes, dmdA subclade C/2 genes, and dmdA subclade D genes exhibited significant correlations with the marine Roseobacter clade, SAR11 subgroup Ib, and SAR11 subgroup Ia, respectively. SAR11 subgroups Ia and Ib, which possessed dmdA genes, were suggested to be the main potential DMSP consumers. The Roseobacter clade members possessing dddP genes in oligotrophic subtropical regions were possible DMS producers. These results suggest that DMSP degradation genes are abundant and widely distributed in the surface seawater and that the marine bacteria possessing these genes influence the degradation of DMSP and regulate the emissions of DMS in subtropical gyres of the Pacific Ocean. PMID:25862229

  2. Species Abundance Distribution of Ectoparasites on Norway Rats (Rattus norvegicus) from a Localized Area in Southwest China

    PubMed Central

    Guo, Xian Guo; Dong, Wen Ge; Men, Xing Yuan; Qian, Ti Jun; Wu, Dian; Ren, Tian Guang; Qin, Feng; Song, Wen Yu; Yang, Zhi Hua; Fletcher, Quinn E

    2016-01-01

    Background: The species of ectoparasites that live on a specific host in a geographical region form an ectoparasite community. Species abundance distributions describe the number of individuals observed for each different species that is encountered within a community. Based on properties of the species abundance distribution, the expected total number of species present in the community can be estimated. Methods: Preston’s lognormal distribution model was used to fit the expected species abundance distribution curve. Using the expected species abundance distribution curve, we estimated the total number of expected parasite species present and the amount of species that were likely missed by our sampling in the field. Results: In total, 8040 ectoparasites (fleas, sucking lice, gamasid mites and chigger mites) were collected from 431 Norway rats (Rattus norvegicus) from a localized area in southwest China. These ectoparasites were identified to be 47 species from 26 genera in 10 families. The majority of ectoparasite species were chigger mites (family Trombiculidae) while the majority of individuals were sucking lice in the family Polyplacidae. The expected species abundance distribution curve demonstrated the classic pattern that the majority of ectoparasite species were rare and that there were a few common species. The total expected number of ectoparasite species on R. norvegicus was estimated to be 85 species, and 38 species were likely missed by our sampling in the field. Conclusions: Norway rats harbor a large suite of ectoparasites. Future field investigations should sample large numbers of host individuals to assess ectoparasite populations. PMID:27308277

  3. Marine litter in the upper São Vicente submarine canyon (SW Portugal): Abundance, distribution, composition and fauna interactions.

    PubMed

    Oliveira, Frederico; Monteiro, Pedro; Bentes, Luis; Henriques, Nuno Sales; Aguilar, Ricardo; Gonçalves, Jorge M S

    2015-08-15

    Marine litter has become a worldwide environmental problem, tainting all ocean habitats. The abundance, distribution and composition of litter and its interactions with fauna were evaluated in the upper S. Vicente canyon using video images from 3 remote operated vehicle exploratory dives. Litter was present in all dives and the abundance was as high as 3.31 items100m(-1). Mean abundance of litter over rock bottom was higher than on soft substrate. Mean litter abundance was slightly higher than reported for other canyons on the Portuguese margin, but lower in comparison to more urbanized coastal areas of the world. Lost fishing gear was the prevalent type of litter, indicating that the majority of litter originates from maritime sources, mainly fishing activity. Physical contact with sessile fauna and entanglement of specimens were the major impacts of lost fishing gear. Based on the importance of this region for the local fishermen, litter abundance is expected to increase. PMID:26051154

  4. Distribution and abundance of Antarctic krill (Euphausia superba) along the Antarctic Peninsula

    NASA Astrophysics Data System (ADS)

    Siegel, Volker; Reiss, Christian S.; Dietrich, Kimberly S.; Haraldsson, Matilda; Rohardt, Gerhard

    2013-07-01

    Net-based data on the abundance, distribution, and demographic patterns of Antarctic krill are quantified from a contemporaneous two ship survey of the Antarctic Peninsula during austral summer 2011. Two survey areas were sampled focussed on Marguerite Bay in the south, and the tip of the Antarctic Peninsula in the north. Data from 177 stations showed that the highest concentrations of krill were found in the southern sampling area. Differences between areas were associated with a few large catches of one year old krill found in anomalously warm and productive waters in Marguerite Bay, and small krill catches in the less-productive, offshore waters in the north. Estimated krill density across the survey area was 3.4 krill m-2, and was low compared to the long-term average of 45 krill m-2 for the Elephant Island area. Overall recruitment between the two survey regions was similar, but per capita recruitment was about 60% lower than historical mean recruitment levels measured at Elephant Island since the late 1970s. Demographic patterns showed small krill concentrated near the coast, and large krill concentrated offshore on the shelf and slope all along the survey area. The offshore distribution of adult krill was delineated by the warm (˜1 °C), low salinity (33.8) water at 30 m, suggesting that most krill were present shoreward of the southern boundary of Antarctic Circumpolar Current Front. Distributions of larvae indicated that three hotspot areas were important for the production of krill: slope areas outside Marguerite Bay and north of the South Shetland Islands, and near the coast around Antarctic Sound. Successful spawning, as inferred from larval abundance, was roughly coincident with the shelf break and not with inshore waters. Given the rapid changes in climate along the Antarctic Peninsula and the lower per capita recruitment observed in recent years, studies comparing and contrasting production, growth, and recruitment across the Peninsula will be

  5. Abundance and distribution of ultramafic microbreccia in Moses Rock Dike: Quantitative application of AIS data

    NASA Technical Reports Server (NTRS)

    Mustard, John F.; Pieters, Carle M.

    1987-01-01

    Moses Rock dike is a Tertiary diatreme containing serpentinized ultramafic microbreccia (SUM). Field evidence indicates the SUM was emplaced first followed by breccias derived from the Permian strata exposed in the walls of the diatreme and finally by complex breccias containing basement and mantle derived rocks. SUM is found primarily dispersed throughout the matrix of the diatreme. Moses Rock dike was examined with Airborne Imaging Spectrometer (AIS) to map the distribution and excess of SUM in the matrix and to better understand the nature of the eruption which formed this explosive volcanic feature. AIS data was calibrated by dividing the suite of AIS data by data from an internal standard area and then multiplying this relative reflectance data by the absolute bidirectional reflectance of a selected sample from the standard area which was measured in the lab. From the calibrated AIS data the minerals serpentine, gypsum, and illite as well as desert varnish and the lithologies SUM and other sandstones were identified. SUM distribution and abundance in the matrix of the diatreme were examined in detail and two distinct styles of SUM dispersion were observed. The two styles are discussed in detail.

  6. Moving beyond abundance distributions: neutral theory and spatial patterns in a tropical forest

    PubMed Central

    May, Felix; Huth, Andreas; Wiegand, Thorsten

    2015-01-01

    Assessing the relative importance of different processes that determine the spatial distribution of species and the dynamics in highly diverse plant communities remains a challenging question in ecology. Previous modelling approaches often focused on single aggregated forest diversity patterns that convey limited information on the underlying dynamic processes. Here, we use recent advances in inference for stochastic simulation models to evaluate the ability of a spatially explicit and spatially continuous neutral model to quantitatively predict six spatial and non-spatial patterns observed at the 50 ha tropical forest plot on Barro Colorado Island, Panama. The patterns capture different aspects of forest dynamics and biodiversity structure, such as annual mortality rate, species richness, species abundance distribution, beta-diversity and the species–area relationship (SAR). The model correctly predicted each pattern independently and up to five patterns simultaneously. However, the model was unable to match the SAR and beta-diversity simultaneously. Our study moves previous theory towards a dynamic spatial theory of biodiversity and demonstrates the value of spatial data to identify ecological processes. This opens up new avenues to evaluate the consequences of additional process for community assembly and dynamics. PMID:25631991

  7. Riparian Ficus Tree Communities: The Distribution and Abundance of Riparian Fig Trees in Northern Thailand

    PubMed Central

    Pothasin, Pornwiwan; Compton, Stephen G.; Wangpakapattanawong, Prasit

    2014-01-01

    Fig trees (Ficus) are often ecologically significant keystone species because they sustain populations of the many seed-dispersing animals that feed on their fruits. They are prominent components of riparian zones where they may also contribute to bank stability as well as supporting associated animals. The diversity and distributions of riparian fig trees in deciduous and evergreen forests in Chiang Mai Province, Northern Thailand were investigated in 2010–2012. To record the diversity and abundance of riparian fig trees, we (1) calculated stem density, species richness, and diversity indices in 20×50 m randomly selected quadrats along four streams and (2) measured the distances of individual trees from four streams to determine if species exhibit distinct distribution patterns within riparian zones. A total of 1169 individuals (from c. 4 ha) were recorded in the quadrats, representing 33 Ficus species (13 monoecious and 20 dioecious) from six sub-genera and about 70% of all the species recorded from northern Thailand. All 33 species had at least some stems in close proximity to the streams, but they varied in their typical proximity, with F. squamosa Roxb. and F. ischnopoda Miq the most strictly stream-side species. The riparian forests in Northern Thailand support a rich diversity and high density of Ficus species and our results emphasise the importance of fig tree within the broader priorities of riparian area conservation. Plans to maintain or restore properly functioning riparian forests need to take into account their significance. PMID:25310189

  8. The global abundance and size distribution of lakes, ponds, and impoundments

    USGS Publications Warehouse

    Downing, J.A.; Prairie, Y.T.; Cole, J.J.; Duarte, C.M.; Tranvik, L.J.; Striegl, R.G.; McDowell, W.H.; Kortelainen, Pirkko; Caraco, N.F.; Melack, J.M.; Middelburg, J.J.

    2006-01-01

    One of the major impediments to the integration of lentic ecosystems into global environmental analyses has been fragmentary data on the extent and size distribution of lakes, ponds, and impoundments. We use new data sources, enhanced spatial resolution, and new analytical approaches to provide new estimates of the global abundance of surface-water bodies. A global model based on the Pareto distribution shows that the global extent of natural lakes is twice as large as previously known (304 million lakes; 4.2 million km 2 in area) and is dominated in area by millions of water bodies smaller than 1 km2. Similar analyses of impoundments based on inventories of large, engineered dams show that impounded waters cover approximately 0.26 million km2. However, construction of low-tech farm impoundments is estimated to be between 0.1 % and 6% of farm area worldwide, dependent upon precipitation, and represents >77,000 km 2 globally, at present. Overall, about 4.6 million km2 of the earth's continental "land" surface (>3%) is covered by water. These analyses underscore the importance of explicitly considering lakes, ponds, and impoundments, especially small ones, in global analyses of rates and processes. ?? 2006, by the American Society of Limnology and Oceanography, Inc.

  9. Hydroacoustic estimates of abundance and spatial distribution of pelagic prey fishes in western Lake Superior

    USGS Publications Warehouse

    Mason, Doran M.; Johnson, Timothy B.; Harvey, Chris J.; Kitchell, James F.; Schram, Stephen T.; Bronte, Charles R.; Hoff, MIchael H.; Lozano, Stephen J.; Trebitz, Anett S.; Schreiner, Donald R.; Lamon, E. Conrad; Hrabik, Thomas R.

    2005-01-01

    Lake herring (Coregonus artedi) and rainbow smelt (Osmerus mordax) are a valuable prey resource for the recovering lake trout (Salvelinus namaycush) in Lake Superior. However, prey biomass may be insufficient to support the current predator demand. In August 1997, we assessed the abundance and spatial distribution of pelagic coregonines and rainbow smelt in western Lake Superior by combining a 120 kHz split beam acoustics system with midwater trawls. Coregonines comprised the majority of the midwater trawl catches and the length distributions for trawl caught fish coincided with estimated sizes of acoustic targets. Overall mean pelagic prey fish biomass was 15.56 kg ha−1 with the greatest fish biomass occurring in the Apostle Islands region (27.98 kg ha−1), followed by the Duluth Minnesota region (20.22 kg ha−1), and with the lowest biomass occurring in the open waters of western Lake Superior (9.46 kg ha−1). Biomass estimates from hydroacoustics were typically 2–134 times greater than estimates derived from spring bottom trawl surveys. Prey fish biomass for Lake Superior is about order of magnitude less than acoustic estimates for Lakes Michigan and Ontario. Discrepancies observed between bioenergetics-based estimates of predator consumption of coregonines and earlier coregonine biomass estimates may be accounted for by our hydroacoustic estimates.

  10. Abundance, diversity, and patterns of distribution of primates on the Tapiche River in Amazonian Peru.

    PubMed

    Bennett, C L; Leonard, S; Carter, S

    2001-06-01

    This work presents data on the relative diversity, abundance, and distribution patterns of primates in a 20 km2 area of the Tapiche River in the Peruvian Amazon. Population data were collected while the study area was both inundated and dry (March to September 1997) using conventional line-transect census techniques. Survey results reflected the presence of 11 primate species, but population parameters on only eight of the species will be presented, including saddleback tamarins (Saguinus fuscicollis), Bolivian squirrel monkeys (Saimiri boliviensis), brown capuchins (Cebus apella), white-fronted capuchins (Cebus albifrons), monk sakis (Pithecia monachus), red titi monkeys (Callicebus cupreus), red uakaris (Cacajao calvus), and red howler monkeys (Alouatta seniculus). Woolly monkeys (Lagothrix lagotricha), night monkeys (Aotus nancymaae), and pygmy marmosets (Callithrix pygmaea) were also seen in the area. The data for the smaller-bodied primates is similar to that reported almost 18 years earlier, but the data for the larger-bodied primates reflect a loss in the number of animals present in the area. Pressure from hunters and the timber industry may account for declining numbers of large-bodied primates, while it appears that natural features peculiar to the conservation area contribute to the patchy pattern of distribution. PMID:11376449

  11. Range-wide effects of breeding- and nonbreeding-season climate on the abundance of a Neotropical migrant songbird.

    PubMed

    Wilson, Scott; LaDeau, Shannon L; Tøttrup, Anders P; Marra, Peter P

    2011-09-01

    Geographic variation in the population dynamics of a species can result from regional variability in climate and how it affects reproduction and survival. Identifying such effects for migratory birds requires the integration of population models with knowledge of migratory connectivity between breeding and nonbreeding areas. We used Bayesian hierarchical models with 26 years of Breeding Bird Survey data (1982-2007) to investigate the impacts of breeding- and nonbreeding-season climate on abundance of American Redstarts (Setophaga ruticilla) across the species range. We focused on 15 populations defined by Bird Conservation Regions, and we included variation across routes and observers as well as temporal trends and climate effects. American Redstart populations that breed in eastern North America showed increased abundance following winters with higher plant productivity in the Caribbean where they are expected to overwinter. In contrast, western breeding populations showed little response to conditions in their expected wintering areas in west Mexico, perhaps reflecting lower migratory connectivity or differential effects of winter rainfall on individuals across the species range. Unlike the case with winter climate, we found few effects of temperature prior to arrival in spring (March-April) or during the nesting period (May-June) on abundance the following year. Eight populations showed significant changes in abundance, with the steepest declines in the Atlantic Northern Forest (-3.4%/yr) and the greatest increases in the Prairie Hardwood Transition (4%/yr). This study emphasizes how the effects of climate on populations of migratory birds are context dependent and can vary depending on geographic location and the period of the annual cycle. Such knowledge is essential for predicting regional variation in how populations of a species might vary in their response to climate change. PMID:21939075

  12. Oxygen abundance distributions in six late-type galaxies based on SALT spectra of H II regions

    NASA Astrophysics Data System (ADS)

    Zinchenko, I. A.; Kniazev, A. Y.; Grebel, E. K.; Pilyugin, L. S.

    2015-10-01

    Spectra of 34 H ii regions in the late-type galaxies NGC 1087, NGC 2967, NGC 3023, NGC 4030, NGC 4123, and NGC 4517A were observed with the South African Large Telescope (SALT). In all 34 H ii regions, oxygen abundances were determined through the "counterpart" method (C method). Additionally, in two H ii regions in which we detected auroral lines, we measured oxygen abundances with the classic Te method. We also estimated the abundances in our H ii regions using the O3N2 and N2 calibrations and compared those with the C-based abundances. With these data, we examined the radial abundance distributions in the disks of our target galaxies. We derived surface-brightness profiles and other characteristics of the disks (the surface brightness at the disk center and the disk scale length) in three photometric bands for each galaxy using publicly available photometric imaging data. The radial distributions of the oxygen abundances predicted by the relation between abundance and disk surface brightness in the W1 band obtained for spiral galaxies in our previous study are close to the radial distributions of the oxygen abundances determined from the analysis of the emission line spectra for four galaxies where this relation is applicable. Hence, when the surface-brightness profile of a late-type galaxy is known, this parametric relation can be used to estimate the likely present-day oxygen abundance in the disk of the galaxy. Based on observations made with the Southern African Large Telescope, programs 2012-1-RSA_OTH-001, 2012-2-RSA_OTH-003 and 2013-1-RSA_OTH-005.

  13. Abundance of adult horseshoe crabs (Limulus polylphemus) in Delaware Bay estimated from a bay-wide mark-recapture study

    USGS Publications Warehouse

    Smith, D.R.; Millard, M.J.; Eyler, S.

    2006-01-01

    Estimates of the abundance of American horseshoe crabs (Limulus polyphemus) are important to determine egg production and to manage populations for the energetic needs of shorebirds that feed on horseshoe crab eggs. In 2003, over 17,500 horseshoe crabs were tagged and released throughout Delaware Bay, and recaptured crabs came from spawning surveys that were conducted during peak spawning. We used two release cohorts to test for a temporary effect of tagging on spawning behavior and we adjusted the number of releases according to relocation rates from a telemetry study. The abundance estimate was 20 million horseshoe crabs (90% confidence interval: 13-28 million), of which 6.25 million (90% CI: 4.0-8.8 million) were females. The combined harvest rate for Delaware, New Jersey, Virginia, and Maryland in 2003 was 4% (90% CI: 3-6%) of the abundance estimate. Over-wintering of adults in Delaware Bay could explain, in part, differences in estimates from ocean-trawl surveys. Based on fecundity of 88,000 eggs per female, egg production was 5.5??1011 (90% CI: 3.5??1011, 7.7??1011), but egg availability for shorebirds also depended on overlap between horseshoe crab and shorebird migrations, density-dependent bioturbation, and wave-mediated vertical transport.

  14. Inter-annual and seasonal trends in cetacean distribution, density and abundance off southern California

    NASA Astrophysics Data System (ADS)

    Campbell, Gregory S.; Thomas, Len; Whitaker, Katherine; Douglas, Annie B.; Calambokidis, John; Hildebrand, John A.

    2015-02-01

    Trends in cetacean density and distribution off southern California were assessed through visual line-transect surveys during thirty-seven California Cooperative Oceanic Fisheries Investigations (CalCOFI) cruises from July 2004-November 2013. From sightings of the six most commonly encountered cetacean species, seasonal, annual and overall density estimates were calculated. Blue whales (Balaenoptera musculus), fin whales (Balaenoptera physalus) and humpback whales (Megaptera novaeangliae) were the most frequently sighted baleen whales with overall densities of 0.91/1000 km2 (CV=0.27), 2.73/1000 km2 (CV=0.19), and 1.17/1000 km2 (CV=0.21) respectively. Species specific density estimates, stratified by cruise, were analyzed using a generalized additive model to estimate long-term trends and correct for seasonal imbalances. Variances were estimated using a non-parametric bootstrap with one day of effort as the sampling unit. Blue whales were primarily observed during summer and fall while fin and humpback whales were observed year-round with peaks in density during summer and spring respectively. Short-beaked common dolphins (Delphinus delphis), Pacific white-sided dolphins (Lagenorhynchus obliquidens) and Dall's porpoise (Phocoenoidesdalli) were the most frequently encountered small cetaceans with overall densities of 705.83/1000 km2 (CV=0.22), 51.98/1000 km2 (CV=0.27), and 21.37/1000 km2 (CV=0.19) respectively. Seasonally, short-beaked common dolphins were most abundant in winter whereas Pacific white-sided dolphins and Dall's porpoise were most abundant during spring. There were no significant long-term changes in blue whale, fin whale, humpback whale, short-beaked common dolphin or Dall's porpoise densities while Pacific white-sided dolphins exhibited a significant decrease in density across the ten-year study. The results from this study were fundamentally consistent with earlier studies, but provide greater temporal and seasonal resolution.

  15. Reconstructing the Accretion History of the Galactic Halo Using Stellar Chemical Abundance Ratio Distributions

    NASA Astrophysics Data System (ADS)

    Lee, Duane M.; Johnston, Kathryn V.; Sen, Bodhisattva; Jessop, Will

    2016-08-01

    In this study we tested the prospects of using 2D chemical abundance ratio distributions (CARDs) found in stars of the stellar halo to determine its formation history. First, we used simulated data from eleven ``MW-like'' halos to generate satellite template sets of 2D CARDs of accreted dwarf satellites which are comprised of accreted dwarfs from various mass regimes and epochs of accretion. Next, we randomly drew samples of ~ 103-4 mock observations of stellar chemical abundance ratios ([α/Fe], [Fe/H]) from those eleven halos to generate samples of the underlying densities for our CARDs to be compared to our templates in our analysis. Finally, we used the expectation-maximization algorithm to derive accretion histories in relation to the satellite template set (STS) used and the sample size. For certain STS used we typically can identify the relative mass contributions of all accreted satellites to within a factor of 2. We also find that this method is particularly sensitive to older accretion events involving low-luminous dwarfs e.g. ultra-faint dwarfs - precisely those events that are too ancient to be seen by phase-space studies of stars and too faint to be seen by high-z studies of the early Universe. Since our results only exploit two chemical dimensions and near-future surveys promise to provide ~ 6-9 dimensions, we conclude that these new high-resolution spectroscopic surveys of the stellar halo will allow us (given the development of new CARD-generating dwarf models) to recover the luminosity function of infalling dwarf galaxies - and the detailed accretion history of the halo - across cosmic time.

  16. The Distribution, Excitation, and Abundance of C^+, CH^+, and CH in Orion KL

    NASA Astrophysics Data System (ADS)

    Gupta, Harshal; Morris, Patrick; Nagy, Zsofia; Pearson, John; Ossenkopf, Volker

    2015-06-01

    The CH^+ ion was one of the first molecules identified in the interstellar gas over 75 years ago, and is postulated to be a key species in the initial steps of interstellar carbon chemistry. The high observed abundances of CH^+ in the interstellar gas remain a puzzle, because the main production pathway of CH^+, viz., C++H2 → CH+ + H, is so endothermic (4640~K), that it is unlikely to proceed at the typical temperatures of molecular clouds. One way in which the high endothermicity may be overcome, is if a significant fraction of the H_2 is vibrationally excited, as is the case in molecular gas exposed to intense far-ultraviolet radiation fields. Elucidating the formation of CH^+ in molecular clouds requires characterization of its spatial distribution, as well as that of the key participants in the chemical pathways yielding CH^+. Here we present high-resolution spectral maps of the two lowest rotational transitions of CH^+, the fine structure transition of C^+, and the hyperfine-split fine structure transitions of CH in a ˜ 3' × 3' region around the Orion Kleinmann-Low (KL) nebula, obtained with the Herschel Space Observatory's Heterodyne Instrument for the Far-Infrared (HIFI). We compare these maps to those of CH^+ and C^+ in the Orion Bar photodissociation region (PDR), and discuss the excitation and abundance of CH^+ toward Orion KL in the context of chemical and radiative transfer models, which have recently been successfully applied to the Orion Bar PDR. These observations were done as part of the Herschel observations of EXtraordinary sources: the Orion and Sagittarius star-forming regions (HEXOS) Key Programme, led by E. A. Bergin at the University of Michigan, Ann Arbor, MI. Nagy, Z. et al. 2013, A&A 550, A96

  17. Reconstructing the Accretion History of the Galactic Halo Using Stellar Chemical Abundance Ratio Distributions

    NASA Astrophysics Data System (ADS)

    Lee, Duane Morris; Johnston, Kathryn V.; Sen, Bodhisattva; Jessop, Will

    2015-08-01

    In this study we tested the prospects of using 2D chemical abundance ratio distributions (CARDs) found in stars of the stellar halo to determine its formation history. First, we used simulated data from eleven ``MW-like'' halos to generate satellite template sets of 2D CARDs of accreted dwarf satellites which are comprised of accreted dwarfs from various mass regimes and epochs of accretion. Next, we randomly drew samples of ~103-4 mock observations of stellar chemical abundance ratios ([α/Fe], [Fe/H]) from those eleven halos to generate samples of the underlying densities for our CARDs to be compared to our templates in our analysis. Finally, we used the expectation-maximization algorithm to derive accretion histories in relation to the satellite template set (STS) used and the sample size. For certain STS used we typically can identify the relative mass contributions of all accreted satellites to within a factor of 2. We also find that this method is particularly sensitive to older accretion events involving low-luminous dwarfs e.g. ultra-faint dwarfs --- precisely those events that are too ancient to be seen by phase-space studies of stars and too faint to be seen by high-z studies of the early Universe. Since our results only exploit two chemical dimensions and near-future surveys promise to provide ~6-9 dimensions, we conclude that these new high-resolution spectroscopic surveys of the stellar halo will allow us (given the development of new CARD-generating dwarf models) to recover the luminosity function of infalling dwarf galaxies --- and the detailed accretion history of the halo --- across cosmic time.

  18. High frequency (hourly) variation in vertical distribution and abundance of meroplanktonic larvae in nearshore waters during strong internal tidal forcing

    NASA Astrophysics Data System (ADS)

    Liévana MacTavish, A.; Ladah, L. B.; Lavín, M. F.; Filonov, A.; Tapia, Fabian J.; Leichter, J.

    2016-04-01

    We related the vertical distribution and abundance of nearshore meroplankton at hourly time scales with internal tidal wave events. We proposed that significant changes in plankter abundance would occur across internal tidal fronts, and that surface and bottom strata would respond in opposite fashions. First-mode internal tidal bores propagating in the alongshore direction were detected in water-column currents and baroclinic temperature changes. Surface and bottom currents always flowed in opposite directions, and abrupt flow reversals coincided with large temperature changes during arrival of bores. Crab zoeae and barnacle cyprids were more abundant in the bottom strata, whereas barnacle nauplii showed the opposite pattern. Significant changes in vertical distribution and abundance of target meroplankters occurred across internal tidal fronts, especially for crabs at depth, with surface and bottom organisms responding in opposite fashions. Changes in plankter abundance were significantly correlated with current flows in the strata where they were most abundant. The manner in which plankters were affected (increasing or decreasing abundance) appeared to be modulated by their vertical position within the water column. The significant differences found at the high frequencies of this study, maintained across sampling days, suggest that nearshore meroplankton populations may have greater and more consistent temporal and vertical variability than previously considered.

  19. The Unique Na:O Abundance Distribution in NGC 6791: The First Open(?) Cluster with Multiple Populations

    NASA Astrophysics Data System (ADS)

    Geisler, D.; Villanova, S.; Carraro, G.; Pilachowski, C.; Cummings, J.; Johnson, C. I.; Bresolin, F.

    2012-09-01

    Almost all globular clusters investigated exhibit a spread in their light element abundances, the most studied being an Na:O anticorrelation. In contrast, open clusters show a homogeneous composition and are still regarded as Simple Stellar Populations. The most probable reason for this difference is that globulars had an initial mass high enough to retain primordial gas and ejecta from the first stellar generation and thus formed a second generation with a distinct composition, an initial mass exceeding that of open clusters. NGC 6791 is a massive open cluster and warrants a detailed search for chemical inhomogeneities. We collected high-resolution, high signal-to-noise spectra of 21 members covering a wide range of evolutionary status and measured their Na, O, and Fe content. We found [Fe/H] = +0.42 ± 0.01, in good agreement with previous values, and no evidence for a spread. However, the Na:O distribution is completely unprecedented. It becomes the first open cluster to show intrinsic abundance variations that cannot be explained by mixing, and thus the first discovered to host multiple populations. It is also the first star cluster to exhibit two subpopulations in the Na:O diagram with one being chemically homogeneous while the second has an intrinsic spread that follows the anticorrelation so far displayed only by globular clusters. NGC 6791 is unique in many aspects, displaying certain characteristics typical of open clusters, others more reminiscent of globulars, and yet others, in particular its Na:O behavior investigated here, that are totally unprecedented. It clearly had a complex and fascinating history.

  20. Spatial distribution patterns of ammonia-oxidizing archaea abundance in subtropical forests at early and late successional stages

    PubMed Central

    Chen, Jie; Zhang, Hui; Liu, Wei; Lian, Juyu; Ye, Wanhui; Shen, Weijun

    2015-01-01

    Characterizing the spatial distribution patterns of soil microorganisms is helpful in understanding the biogeochemical processes they perform, but has been less studied relative to those of macroorganisms. In this study, we investigated and compared the spatially explicit distribution patterns of ammonia-oxidizing archaea (AOA) abundance and the influential factors between an early (ES) and a late successional (LS) subtropical forest stand. The average AOA abundance, vegetational attributes, and soil nutrient contents were mostly greater in the LS than the ES stand (P = 0.085 or smaller), but their spatial variations were more pronounced in the ES than the LS stand. The spatial distribution patches of AOA abundance were smaller and more irregular in the ES stand (patch size <50 m) than in the LS stand (patch size about 120 m). Edaphic and vegetational variables contributed more to the spatial variations of AOA abundance for the ES (9.3%) stand than for LS stand, whereas spatial variables (MEMs) were the main contributors (62%) for the LS stand. These results suggest that environmental filtering likely influence the spatial distribution of AOA abundance at early successional stage more than that at late successional stage, while spatial dispersal is dominant at late successional stage. PMID:26565069

  1. Spatial distribution patterns of ammonia-oxidizing archaea abundance in subtropical forests at early and late successional stages

    NASA Astrophysics Data System (ADS)

    Chen, Jie; Zhang, Hui; Liu, Wei; Lian, Juyu; Ye, Wanhui; Shen, Weijun

    2015-11-01

    Characterizing the spatial distribution patterns of soil microorganisms is helpful in understanding the biogeochemical processes they perform, but has been less studied relative to those of macroorganisms. In this study, we investigated and compared the spatially explicit distribution patterns of ammonia-oxidizing archaea (AOA) abundance and the influential factors between an early (ES) and a late successional (LS) subtropical forest stand. The average AOA abundance, vegetational attributes, and soil nutrient contents were mostly greater in the LS than the ES stand (P = 0.085 or smaller), but their spatial variations were more pronounced in the ES than the LS stand. The spatial distribution patches of AOA abundance were smaller and more irregular in the ES stand (patch size <50 m) than in the LS stand (patch size about 120 m). Edaphic and vegetational variables contributed more to the spatial variations of AOA abundance for the ES (9.3%) stand than for LS stand, whereas spatial variables (MEMs) were the main contributors (62%) for the LS stand. These results suggest that environmental filtering likely influence the spatial distribution of AOA abundance at early successional stage more than that at late successional stage, while spatial dispersal is dominant at late successional stage.

  2. Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes.

    PubMed

    Li, Bing; Yang, Ying; Ma, Liping; Ju, Feng; Guo, Feng; Tiedje, James M; Zhang, Tong

    2015-11-01

    A metagenomic approach and network analysis was used to investigate the wide-spectrum profiles of antibiotic resistance genes (ARGs) and their co-occurrence patterns in 50 samples from 10 typical environments. In total, 260 ARG subtypes belonging to 18 ARG types were detected with an abundance range of 5.4 × 10(-6)-2.2 × 10(-1) copy of ARG per copy of 16S-rRNA gene. The trend of the total ARG abundances in environments matched well with the levels of anthropogenic impacts on these environments. From the less impacted environments to the seriously impacted environments, the total ARG abundances increased up to three orders of magnitude, that is, from 3.2 × 10(-3) to 3.1 × 10(0) copy of ARG per copy of 16S-rRNA gene. The abundant ARGs were associated with aminoglycoside, bacitracin, β-lactam, chloramphenicol, macrolide-lincosamide-streptogramin, quinolone, sulphonamide and tetracycline, in agreement with the antibiotics extensively used in human medicine or veterinary medicine/promoters. The widespread occurrences and abundance variation trend of vancomycin resistance genes in different environments might imply the spread of vancomycin resistance genes because of the selective pressure resulting from vancomycin use. The simultaneous enrichment of 12 ARG types in adult chicken faeces suggests the coselection of multiple ARGs in this production system. Non-metric multidimensional scaling analysis revealed that samples belonging to the same environment generally possessed similar ARG compositions. Based on the co-occurrence pattern revealed by network analysis, tetM and aminoglycoside resistance protein, the hubs of the ARG network, are proposed to be indicators to quantitatively estimate the abundance of 23 other co-occurring ARG subtypes by power functions. PMID:25918831

  3. Field study site selection, species abundance and monthly distribution of anopheline mosquitoes in the northern Kruger National Park, South Africa

    PubMed Central

    2014-01-01

    Background Knowledge of the ecology and behaviour of a target species is a prerequisite for the successful development of any vector control strategy. Before the implementation of any strategy it is essential to have comprehensive information on the bionomics of species in the targeted area. The aims of this study were to conduct regular entomological surveillance and to determine the relative abundance of anopheline species in the northern Kruger National Park. In addition to this, the impact of weather conditions on an Anopheles arabiensis population were evaluated and a range of mosquito collection methods were assessed. Methods A survey of Anopheles species was made between July 2010 and December 2012. Mosquitoes were collected from five sites in the northern Kruger National Park, using carbon dioxide-baited traps, human landing and larval collections. Specimens were identified morphologically and polymerase chain reaction assays were subsequently used where appropriate. Results A total of 3,311 specimens belonging to nine different taxa was collected. Species collected were: Anopheles arabiensis (n = 1,352), Anopheles quadriannulatus (n = 870), Anopheles coustani (n = 395), Anopheles merus (n = 349), Anopheles pretoriensis (n = 35), Anopheles maculipalpis (n = 28), Anopheles rivulorum (n = 19), Anopheles squamosus (n = 3) and Anopheles rufipes (n = 2). Members of the Anopheles gambiae species complex were the most abundant and widely distributed, occurring across all collection sites. The highest number of mosquitoes was collected using CO2 baited net traps (58.2%) followed by human landing catches (24.8%). Larval collections (17%) provided an additional method to increase sample size. Mosquito sampling productivity was influenced by prevailing weather conditions and overall population densities fluctuated with seasons. Conclusion Several anopheline species occur in the northern Kruger National Park and their densities

  4. Spatial Patterns in the Distribution, Diversity and Abundance of Benthic Foraminifera around Moorea (Society Archipelago, French Polynesia).

    PubMed

    Fajemila, Olugbenga T; Langer, Martin R; Lipps, Jere H

    2015-01-01

    Coral reefs are now subject to global threats and influences from numerous anthropogenic sources. Foraminifera, a group of unicellular shelled organisms, are excellent indicators of water quality and reef health. Thus we studied a set of samples taken in 1992 to provide a foraminiferal baseline for future studies of environmental change. Our study provides the first island-wide analysis of shallow benthic foraminifera from around Moorea (Society Archipelago). We analyzed the composition, species richness, patterns of distribution and abundance of unstained foraminiferal assemblages from bays, fringing reefs, nearshore and back- and fore-reef environments. A total of 380 taxa of foraminifera were recorded, a number that almost doubles previous species counts. Spatial patterns of foraminiferal assemblages are characterized by numerical abundances of individual taxa, cluster groups and gradients of species richness, as documented by cluster, Fisher α, ternary plot and Principal Component Analyses (PCA). The inner bay inlets are dominated by stress-tolerant, mostly thin-shelled taxa of Bolivina, Bolivinella, Nonionoides, Elongobula, and Ammonia preferring low-oxygen and/or nutrient-rich habitats influenced by coastal factors such as fresh-water runoff and overhanging mangroves. The larger symbiont-bearing foraminifera (Borelis, Amphistegina, Heterostegina, Peneroplis) generally live in the oligotrophic, well-lit back- and fore-reef environments. Amphisteginids and peneroplids were among the few taxa found in the bay environments, probably due to their preferences for phytal substrates and tolerance to moderate levels of eutrophication. The fringing reef environments along the outer bay are characterized by Borelis schlumbergeri, Heterostegina depressa, Textularia spp. and various miliolids which represent a hotspot of diversity within the complex reef-lagoon system of Moorea. The high foraminiferal Fisher α and species richness diversity in outer bay fringing reefs

  5. Spatial Patterns in the Distribution, Diversity and Abundance of Benthic Foraminifera around Moorea (Society Archipelago, French Polynesia)

    PubMed Central

    2015-01-01

    Coral reefs are now subject to global threats and influences from numerous anthropogenic sources. Foraminifera, a group of unicellular shelled organisms, are excellent indicators of water quality and reef health. Thus we studied a set of samples taken in 1992 to provide a foraminiferal baseline for future studies of environmental change. Our study provides the first island-wide analysis of shallow benthic foraminifera from around Moorea (Society Archipelago). We analyzed the composition, species richness, patterns of distribution and abundance of unstained foraminiferal assemblages from bays, fringing reefs, nearshore and back- and fore-reef environments. A total of 380 taxa of foraminifera were recorded, a number that almost doubles previous species counts. Spatial patterns of foraminiferal assemblages are characterized by numerical abundances of individual taxa, cluster groups and gradients of species richness, as documented by cluster, Fisher α, ternary plot and Principal Component Analyses (PCA). The inner bay inlets are dominated by stress-tolerant, mostly thin-shelled taxa of Bolivina, Bolivinella, Nonionoides, Elongobula, and Ammonia preferring low-oxygen and/or nutrient-rich habitats influenced by coastal factors such as fresh-water runoff and overhanging mangroves. The larger symbiont-bearing foraminifera (Borelis, Amphistegina, Heterostegina, Peneroplis) generally live in the oligotrophic, well-lit back- and fore-reef environments. Amphisteginids and peneroplids were among the few taxa found in the bay environments, probably due to their preferences for phytal substrates and tolerance to moderate levels of eutrophication. The fringing reef environments along the outer bay are characterized by Borelis schlumbergeri, Heterostegina depressa, Textularia spp. and various miliolids which represent a hotspot of diversity within the complex reef-lagoon system of Moorea. The high foraminiferal Fisher α and species richness diversity in outer bay fringing reefs

  6. Abundance and distribution of gaseous ammonia and particulate ammonium at Delhi (India)

    NASA Astrophysics Data System (ADS)

    Singh, S.; Kulshrestha, U. C.

    2012-01-01

    This study reports abundance and distribution of gaseous NH3 and particulate NH4+ at Delhi. Gaseous NH3 and particulate NH4+ concentrations were measured during pre monsoon, monsoon and postmonsoon seasons of the years 2010 and 2011. Average concentrations of gaseous NH3 during premonsoon, monsoon and post monsoon seasons were recorded as 26.4, 33.2 and 32.5 μg m-3, respectively. Gaseous NH3 concentrations were the highest during monsoon due to decay and decomposition of plants and other biogenic material under wet conditions which emit NH3. The results showed that particulate NH4+ was always lower than the gaseous NH3 during all the seasons. The concentrations of particulate NH4+ were recorded as 11.6, 22.9 and 8.5 μg m-3 during premonsoon, monsoon and postmonsoon seasons, respectively. The percent fraction of particulate NH4+ was noticed highest during monsoon season due to increased humidity levels. On anaverage, 33.3 % of total N-NHx was present as particulate NH4+. Higher concentrations of NH3 noticed during night time may be due to stable atmospheric conditions. Study highlighted that as compared to rural sites, urban sites showed higher concentrations of gaseous NH3 in India which may be due to higher population density, human activities and poor sanitation arrangements.

  7. Snow-borne nanosized particles: Abundance, distribution, composition, and significance in ice nucleation processes

    NASA Astrophysics Data System (ADS)

    Rangel-Alvarado, Rodrigo Benjamin; Nazarenko, Yevgen; Ariya, Parisa A.

    2015-11-01

    Physicochemical processes of nucleation constitute a major uncertainty in understanding aerosol-cloud interactions. To improve the knowledge of the ice nucleation process, we characterized physical, chemical, and biological properties of fresh snow using a suite of state-of-the-art techniques based on mass spectrometry, electron microscopy, chromatography, and optical particle sizing. Samples were collected at two North American Arctic sites, as part of international campaigns (2006 and 2009), and in the city of Montreal, Canada, over the last decade. Particle size distribution analyses, in the range of 3 nm to 10 µm, showed that nanosized particles are the most numerous (38-71%) in fresh snow, with a significant portion (11 to 19%) less than 100 nm in size. Particles with diameters less than 200 nm consistently exhibited relatively high ice-nucleating properties (on average ranged from -19.6 ± 2.4 to -8.1 ± 2.6°C). Chemical analysis of the nanosized fraction suggests that they contain bioorganic materials, such as amino acids, as well as inorganic compounds with similar characteristics to mineral dust. The implication of nanoparticle ubiquity and abundance in diverse snow ecosystems are discussed in the context of their importance in understanding atmospheric nucleation processes.

  8. Abundance and distribution of fatty acids in sediments of the South Mid-Atlantic Ridge

    NASA Astrophysics Data System (ADS)

    Huang, Xin; Zeng, Zhigang; Chen, Shuai; Yin, Xuebo; Wang, Xiaoyuan; Ma, Yao; Yang, Baoju; Rong, Kunbo; Shu, Yunchao; Jiang, Tao

    2015-04-01

    Sediment samples obtained from the South Mid-Atlantic Ridge were studies by gas chromatography-mass spectrometer (GC-MS) for the abundance and distributions of total fatty acids (TFAs). Approximately 34 fatty acids were identified, with the chain-lengths ranging from C12 to C30. The total concentrations of TFAs (ΣTFA) ranged from 7.15 to 30.09 μg g-1 dry sediment, and ΣTFA was weakly correlated with bitumen content ( R 2 = 0.69). The ΣTFA of samples around hydrothermal areas were significantly higher than that of samples away from hydrothermal areas, indicating intense primary production and large biomass in the hydrothermal areas, and suggesting a close relationship between hydrothermal activity and ΣTFA of samples. The characteristics of the TFA composition in the present study are rich in monounsaturated fatty acids and lacking in polyunsaturated fatty acids, and the ratios between the concentrations of monounsaturated fatty acids and ΣTFAs in samples close to the hydrothermal areas, are about 0.8, but for samples far from the hydrothermal areas, they are only about 0.5. Several fatty acids ( e.g., a/iC15:0 and C16:1ω7), which are signature biomarkers for sulfur-metabolizing bacteria, show the same distribution trend as ΣTFA of samples, further highlighting the close relationship between fatty acid content and hydrothermal activity and/or hydrothermal communities. The metabolic activities of hydrothermal communities, especially those of microorganisms, are likely the main source of fatty acids in samples.

  9. The role of geography and host abundance in the distribution of parasitoids of an alien pest

    PubMed Central

    Nováková, Petra; Holuša, Jaroslav

    2016-01-01

    Chalcid wasps (Hymenoptera: Chalcidoidea) are probably the most effective and abundant parasitoids of the horse chestnut leaf miner (Cameraria ohridella), an alien pest in Europe that lacks specialized enemies. We studied how the species richness and abundance of chalcids are influenced by altitude, direction of an alien spread and host abundance of C. ohridella. We quantified the numbers and species richness of chalcid wasps and the numbers of C. ohridella that emerged from horse chestnut (Aesculus hippocastanum) leaf litter samples collected from 35 sites in the Czech Republic. Species richness of chalcids, which was considered an indicator of the possible adaptation of parasitoids to this alien host, was unrelated to C. ohridella abundance, direction of spread, or altitude. Chalcid abundance, which was considered an indicator of parasitism of the alien host, was strongly and positively related to C. ohridella abundance. Chalcid abundance was negatively related to direction of spread and positively related, although in a non-linear manner, to altitude. The relationship of chalcid abundance with direction of spread and altitude was weaker than that with C. ohridella abundance. The results provide evidence that biological control of the alien pest C. ohridella by natural enemies might develop in the future. PMID:26819849

  10. The role of geography and host abundance in the distribution of parasitoids of an alien pest.

    PubMed

    Nováková, Petra; Holuša, Jaroslav; Horák, Jakub

    2016-01-01

    Chalcid wasps (Hymenoptera: Chalcidoidea) are probably the most effective and abundant parasitoids of the horse chestnut leaf miner (Cameraria ohridella), an alien pest in Europe that lacks specialized enemies. We studied how the species richness and abundance of chalcids are influenced by altitude, direction of an alien spread and host abundance of C. ohridella. We quantified the numbers and species richness of chalcid wasps and the numbers of C. ohridella that emerged from horse chestnut (Aesculus hippocastanum) leaf litter samples collected from 35 sites in the Czech Republic. Species richness of chalcids, which was considered an indicator of the possible adaptation of parasitoids to this alien host, was unrelated to C. ohridella abundance, direction of spread, or altitude. Chalcid abundance, which was considered an indicator of parasitism of the alien host, was strongly and positively related to C. ohridella abundance. Chalcid abundance was negatively related to direction of spread and positively related, although in a non-linear manner, to altitude. The relationship of chalcid abundance with direction of spread and altitude was weaker than that with C. ohridella abundance. The results provide evidence that biological control of the alien pest C. ohridella by natural enemies might develop in the future. PMID:26819849

  11. Genome-wide comparison of ferritin family from Archaea, Bacteria, Eukarya, and Viruses: its distribution, characteristic motif, and phylogenetic relationship

    NASA Astrophysics Data System (ADS)

    Bai, Lina; Xie, Ting; Hu, Qingqing; Deng, Changyan; Zheng, Rong; Chen, Wanping

    2015-10-01

    Ferritins are highly conserved proteins that are widely distributed in various species from archaea to humans. The ubiquitous characteristic of these proteins reflects the pivotal contribution of ferritins to the safe storage and timely delivery of iron to achieve iron homeostasis. This study investigated the ferritin genes in 248 genomes from various species, including viruses, archaea, bacteria, and eukarya. The distribution comparison suggests that mammals and eudicots possess abundant ferritin genes, whereas fungi contain very few ferritin genes. Archaea and bacteria show considerable numbers of ferritin genes. Generally, prokaryotes possess three types of ferritin (the typical ferritin, bacterioferritin, and DNA-binding protein from starved cell), whereas eukaryotes have various subunit types of ferritin, thereby indicating the individuation of the ferritin family during evolution. The characteristic motif analysis of ferritins suggested that all key residues specifying the unique structural motifs of ferritin are highly conserved across three domains of life. Meanwhile, the characteristic motifs were also distinguishable between ferritin groups, especially phytoferritins, which show a plant-specific motif. The phylogenetic analyses show that ferritins within the same subfamily or subunits are generally clustered together. The phylogenetic relationships among ferritin members suggest that both gene duplication and horizontal transfer contribute to the wide variety of ferritins, and their possible evolutionary scenario was also proposed. The results contribute to a better understanding of the distribution, characteristic motif, and evolutionary relationship of the ferritin family.

  12. Seasonality and depth distribution of the abundance and activity of ammonia oxidizing microorganisms in marine coastal sediments (North Sea)

    PubMed Central

    Lipsewers, Yvonne A.; Bale, Nicole J.; Hopmans, Ellen C.; Schouten, Stefan; Sinninghe Damsté, Jaap S.; Villanueva, Laura

    2014-01-01

    Microbial processes such as nitrification and anaerobic ammonium oxidation (anammox) are important for nitrogen cycling in marine sediments. Seasonal variations of archaeal and bacterial ammonia oxidizers (AOA and AOB) and anammox bacteria, as well as the environmental factors affecting these groups, are not well studied. We have examined the seasonal and depth distribution of the abundance and potential activity of these microbial groups in coastal marine sediments of the southern North Sea. This was achieved by quantifying specific intact polar lipids as well as the abundance and gene expression of their 16S rRNA gene, the ammonia monooxygenase subunit A (amoA) gene of AOA and AOB, and the hydrazine synthase (hzsA) gene of anammox bacteria. AOA, AOB, and anammox bacteria were detected and transcriptionally active down to 12 cm sediment depth. In all seasons, the abundance of AOA was higher compared to the AOB abundance suggesting that AOA play a more dominant role in aerobic ammonia oxidation in these sediments. Anammox bacteria were abundant and active even in oxygenated and bioturbated parts of the sediment. The abundance of AOA and AOB was relatively stable with depth and over the seasonal cycle, while anammox bacteria abundance and transcriptional activity were highest in August. North Sea sediments thus seem to provide a common, stable, ecological niche for AOA, AOB, and anammox bacteria. PMID:25250020

  13. Abundance and Distribution of Diagnostic Carbon Fixation Genes in a Deep-Sea Hydrothermal Gradient Ecosystem

    NASA Astrophysics Data System (ADS)

    Blumenfeld, H. N.; Kelley, D. S.; Girguis, P. R.; Schrenk, M. O.

    2010-12-01

    hydrothermal chimneys. Ongoing analyses are aimed at quantifying the abundances of these diagnostic carbon fixation genes within the hydrothermal chimney gradients. These data are being compared to a broad array of contextual data to provide insight into the environmental and biological controls that may impact the distribution of the various carbon fixation pathways. Application of genomic approaches to the hydrothermal chimney ecosystem will provide insight into the microbial ecology of such structures and refine our ability to measure autotrophy in hydrothermal habitats sustained by chemical energy.

  14. Distribution and abundance of nontoxic mutants of cyanobacteria in lakes of the Alps.

    PubMed

    Ostermaier, Veronika; Kurmayer, Rainer

    2009-08-01

    The filamentous cyanobacterium Planktothrix rubescens frequently occurs in deep and stratified lakes in the temperate region of the northern hemisphere and is a known producer of the hepatotoxic secondary metabolite microcystin. These cyclic heptapeptides are synthesized nonribosomally via large enzyme complexes encoded by the microcystin (mcy) synthetase gene cluster. The occurrence of cyanobacterial strains lacking microcystin, but containing the mcy gene cluster has been reported repeatedly; it was shown that this inactivation is due to mutations such as gene deletion events and the insertion of transposable elements. In the present study, 12 lakes in Austria, Germany, and Switzerland were sampled from July 2005 to October 2007, and the proportion of inactive mcy genotypes was quantified in relation to the total population of the red-pigmented filamentous cyanobacterium Planktothrix by means of quantitative polymerase chain reaction. In total, four different mutations were quantified, namely two insertions affecting mcyD, one insertion affecting mcyA, and a deletion within mcyH and mcyA. The mutations occurred over a wide range of population densities (40-570,000 filaments L(-1)), and their abundance was found to be positively correlated with population density. However, on average, all nontoxic mutants were found in a low proportion only (min 0%, mean 6.5% +/- 1.1 (SE), max 52% of the total population). The genotype containing the mcyHA deletion had a significantly higher proportion (min 0%, mean 3.7% +/- 1, max 52%) when compared with all the genotypes containing insertions within the mcy gene cluster (min 0%, mean 2.8% +/- 0.7, max 24%). The results demonstrate that the occurrence of inactive mcy genotypes is linearly related to the population density, and selective sweeps of nontoxic mutants did not occur during the transition from prebloom to bloom conditions. PMID:19214623

  15. Detailed Abundances of a Planet-Hosting Wide Binary System: DidPlanet Formation Imprint Chemical Signatures in the Atmospheres ofHD20782/81?

    NASA Astrophysics Data System (ADS)

    Mack, Claude E.; Stassun, Keivan; Schuler, Simon C.; Norris, John E.

    2014-06-01

    We present a detailed chemical abundance analysis of a planet-hosting wide binary system (HD20782 + HD20781), where both stars are G-dwarfs, and each of them hosts giant planets on eccentric orbits with pericenters ~< 0.2 AU. We investigate if giant planets on such orbits could scatter inner rocky planets into the atmospheres of their host stars, and thereby imprint a detectable chemical signature in the stellar photospheric abundances. Using high-resolution, high signal-to-noise echelle spectra, we derive the abundances of 15 elements. In addition, the refractory elements (Tc > 900 K) in both stars show a positive correlation between the elemental abundances and condensation temperatures (Tc), with similar slopes of ~1×10-4 dex K-1. In each star, the measured positive correlations are imperfect, with a scatter of ~5×10-5 dex K-1 about the mean trend; also, certain elements (Na, Al, Sc) are similarly deviant in both stars. We interpret these results in the context of simulations of giant planet migration that predict the accretion of H-depleted rocky material by the host star. We demonstrate that a simple model for a solar-type star accreting material with Earth-like composition predicts a positive -- but imperfect -- correlation between [X/H] and Tc. According to this model, our measured slopes are consistent with the ingestion of 10-20 Earths by both HD20782 and HD20781.

  16. Detailed Abundances of a Planet-Hosting Wide Binary System: Did Planet Formation Imprint Chemical Signatures in the Atmospheres of HD20782/81?

    NASA Astrophysics Data System (ADS)

    Mack, C.

    2014-04-01

    We present a detailed chemical abundance analysis of a planet-hosting wide binary system (HD20782 + HD20781), where both stars are G-dwarfs, and each of them hosts giant planets on eccentric orbits with pericenters ~< 0.2 AU. We investigate if giant planets on such orbits could scatter inner rocky planets into the atmospheres of their host stars, and thereby imprint a detectable chemical signature in the stellar photospheric abundances. Using high-resolution, high signal-to-noise echelle spectra, we derive the abundances of 15 elements. In addition, the refractory elements (Tc > 900 K) in both stars show a positive correlation between the elemental abundances and condensation temperatures (Tc), with similar slopes of ~1x10^(-4) dex K^(-1). In each star, the measured positive correlations are imperfect, with a scatter of ~5x10^(-5) dex K^(-1) about the mean trend; also, certain elements (Na, Al, Sc) are similarly deviant in both stars. We interpret these results in the context of simulations of giant planet migration that predict the accretion of H-depleted rocky material by the host star. We demonstrate that a simple model for a solar-type star accreting material with Earth-like composition predicts a positive -- but imperfect -- correlation between [X/H] and Tc. According to this model, our measured slopes are consistent with the ingestion of 10-20 Earths by both HD20782 and HD20781.

  17. Distribution and relative abundance of humpback whales in relation to environmental variables in coastal British Columbia and adjacent waters

    NASA Astrophysics Data System (ADS)

    Dalla Rosa, Luciano; Ford, John K. B.; Trites, Andrew W.

    2012-03-01

    Humpback whales are common in feeding areas off British Columbia (BC) from spring to fall, and are widely distributed along the coast. Climate change and the increase in population size of North Pacific humpback whales may lead to increased anthropogenic impact and require a better understanding of species-habitat relationships. We investigated the distribution and relative abundance of humpback whales in relation to environmental variables and processes in BC waters using GIS and generalized additive models (GAMs). Six non-systematic cetacean surveys were conducted between 2004 and 2006. Whale encounter rates and environmental variables (oceanographic and remote sensing data) were recorded along transects divided into 4 km segments. A combined 3-year model and individual year models (two surveys each) were fitted with the mgcv R package. Model selection was based primarily on GCV scores. The explained deviance of our models ranged from 39% for the 3-year model to 76% for the 2004 model. Humpback whales were strongly associated with latitude and bathymetric features, including depth, slope and distance to the 100-m isobath. Distance to sea-surface-temperature fronts and salinity (climatology) were also constantly selected by the models. The shapes of smooth functions estimated for variables based on chlorophyll concentration or net primary productivity with different temporal resolutions and time lags were not consistent, even though higher numbers of whales seemed to be associated with higher primary productivity for some models. These and other selected explanatory variables may reflect areas of higher biological productivity that favor top predators. Our study confirms the presence of at least three important regions for humpback whales along the BC coast: south Dixon Entrance, middle and southwestern Hecate Strait and the area between La Perouse Bank and the southern edge of Juan de Fuca Canyon.

  18. Spatial and Seasonal Dynamic of Abundance and Distribution of Guanaco and Livestock: Insights from Using Density Surface and Null Models

    PubMed Central

    Schroeder, Natalia M.; Matteucci, Silvia D.; Moreno, Pablo G.; Gregorio, Pablo; Ovejero, Ramiro; Taraborelli, Paula; Carmanchahi, Pablo D.

    2014-01-01

    Monitoring species abundance and distribution is a prerequisite when assessing species status and population viability, a difficult task to achieve for large herbivores at ecologically meaningful scales. Co-occurrence patterns can be used to infer mechanisms of community organization (such as biotic interactions), although it has been traditionally applied to binary presence/absence data. Here, we combine density surface and null models of abundance data as a novel approach to analyze the spatial and seasonal dynamics of abundance and distribution of guanacos (Lama guanicoe) and domestic herbivores in northern Patagonia, in order to visually and analytically compare the dispersion and co-occurrence pattern of ungulates. We found a marked seasonal pattern in abundance and spatial distribution of L. guanicoe. The guanaco population reached its maximum annual size and spatial dispersion in spring-summer, decreasing up to 6.5 times in size and occupying few sites of the study area in fall-winter. These results are evidence of the seasonal migration process of guanaco populations, an increasingly rare event for terrestrial mammals worldwide. The maximum number of guanacos estimated for spring (25951) is higher than the total population size (10000) 20 years ago, probably due to both counting methodology and population growth. Livestock were mostly distributed near human settlements, as expected by the sedentary management practiced by local people. Herbivore distribution was non-random; i.e., guanaco and livestock abundances co-varied negatively in all seasons, more than expected by chance. Segregation degree of guanaco and small-livestock (goats and sheep) was comparatively stronger than that of guanaco and large-livestock, suggesting a competition mechanism between ecologically similar herbivores, although various environmental factors could also contribute to habitat segregation. The new and compelling combination of methods used here is highly useful for researchers

  19. Long-Term Trends in Abundance and Distribution of Manatees (Trichechus Manatus) in the Northern Banana River, Brevard County, Florida

    NASA Technical Reports Server (NTRS)

    Provancha, J. A.; Provancha, M. J.

    1988-01-01

    Four aerial survey projects were conducted between 1977 and 1986 to determine the abundance, density and distribution of West Indian manatees (Trichechus manatus), in the northern Banana River, Kennedy Space Center, Florida. Manatee density and distribution within selected portions of the 78.5 sq km study area were determined. Peak numbers of manatees occurred in spring of each year. The maximum counts increased from 56 in 1978 to 297 in 1986. Manatee abundance was lowest in the winter of each year. Mean density per flight increased from 0.52 manatees/sq km in 1977-78 to 2.73/sq km in 1984-86. This increase may reflect increases in the east coast population or shifts in the population distribution. Distributional changes were observed in the study area through time, with a lower percentage of manatees occurring in industrial areas and a correspondingly higher percentage of manatees in nonindustrial areas by 1985.

  20. Land use determinants of small mammal abundance and distribution in a plague endemic area of Lushoto District, Tanzania.

    PubMed

    Hieronimo, Proches; Kimaro, Didas N; Kihupi, Nganga I; Gulinck, Hubert; Mulungu, Loth S; Msanya, Balthazar M; Leirs, Herwig; Deckers, Jozef A

    2014-07-01

    Small mammals are considered to be involved in the transmission cycle of bubonic plague, still occurring in different parts of the world, including the Lushoto District in Tanzania. The objective of this study was to determine the relationship between land use types and practices and small mammal abundance and distribution. A field survey was used to collect data in three landscapes differing in plague incidences. Data collection was done both in the wet season (April-June 2012) and dry season (August-October 2012). Analysis of variance and Boosted Regression Trees (BRT) modelling technique were used to establish the relationship between land use and small mammal abundance and distribution. Significant variations (p ≤ 0.05) of small mammal abundance among land use types were identified. Plantation forest with farming, natural forest and fallow had higher populations of small mammals than the other aggregated land use types. The influence of individual land use types on small mammal abundance level showed that, in both dry and wet seasons, miraba and fallow tended to favour small mammals' habitation whereas land tillage practices had the opposite effect. In addition, during the wet season crop types such as potato and maize appeared to positively influence the distribution and abundance of small mammals which was attributed to both shelter and food availability. Based on the findings from this study it is recommended that future efforts to predict and map spatial and temporal human plague infection risk at fine scale should consider the role played by land use and associated human activities on small mammal abundance and distribution. PMID:26867281

  1. Brochosomes produced by leafhoppers-a widely unknown, yet highly abundant species of bioaerosols in ambient air

    NASA Astrophysics Data System (ADS)

    Wittmaack, Klaus

    Brochosomes are excitingly shaped hollow spherical particles produced by leafhoppers (Cicadelliae), presumably to serve as a very efficient water-repellent protective surface coating. The spheroids have a diameter between 250 and 600 nm and are made of a network of protein-lipid rods, arranged in the form of hexagons and pentagons. Brochosomes in the atmosphere have been described only a few times and the reported concentrations were usually small. The cause of the apparently rare occurrence of these particles in ambient air is shown to be twofold. First, most of the brochosomes are airborne not as individual species, but in the form of rather large clusters containing up to 100,000 particles. Second, for high-efficiency collection of particles with aerodynamically complex morphology such as brochosomes (or agglomerates of carbon nanoparticles), size selective sampling with impactors turned out to be more efficient the higher the nozzle velocity. In a series of sampling campaigns brochosomes were found to be the most abundant bioaerosol particles in a semi-urban atmosphere during the warm season. Occasionally, brochosomes tended to react with other nanoparticle matter. As a result, the presumably freshly produced brochosomes became strongly distorted, rearranging in a variety of exotic forms, including perfect or distorted domes or even a spider web.

  2. Wide distribution of autochthonous branched glycerol dialkyl glycerol tetraethers (bGDGTs) in U.S. Great Basin hot springs

    PubMed Central

    Hedlund, Brian P.; Paraiso, Julienne J.; Williams, Amanda J.; Huang, Qiuyuan; Wei, Yuli; Dijkstra, Paul; Hungate, Bruce A.; Dong, Hailiang; Zhang, Chuanlun L.

    2013-01-01

    Branched glycerol dialkyl glycerol tetraethers (bGDGTs) are membrane-spanning lipids that likely stabilize membranes of some bacteria. Although bGDGTs have been reported previously in certain geothermal environments, it has been suggested that they may derive from surrounding soils since bGDGTs are known to be produced by soil bacteria. To test the hypothesis that bGDGTs can be produced by thermophiles in geothermal environments, we examined the distribution and abundance of bGDGTs, along with extensive geochemical data, in 40 sediment and mat samples collected from geothermal systems in the U.S. Great Basin (temperature: 31–95°C; pH: 6.8–10.7). bGDGTs were found in 38 out of 40 samples at concentrations up to 824 ng/g sample dry mass and comprised up to 99.5% of total GDGTs (branched plus isoprenoidal). The wide distribution of bGDGTs in hot springs, strong correlation between core and polar lipid abundances, distinctness of bGDGT profiles compared to nearby soils, and higher concentration of bGDGTs in hot springs compared to nearby soils provided evidence of in situ production, particularly for the minimally methylated bGDGTs I, Ib, and Ic. Polar bGDGTs were found almost exclusively in samples ≤70°C and the absolute abundance of polar bGDGTs correlated negatively with properties of chemically reduced, high temperature spring sources (temperature, H2S/HS−) and positively with properties of oxygenated, low temperature sites (O2, NO−3). Two-way cluster analysis and nonmetric multidimensional scaling based on relative abundance of polar bGDGTs supported these relationships and showed a negative relationship between the degree of methylation and temperature, suggesting a higher abundance for minimally methylated bGDGTs at high temperature. This study presents evidence of the widespread production of bGDGTs in mats and sediments of natural geothermal springs in the U.S. Great Basin, especially in oxygenated, low-temperature sites (≤70°C). PMID:23964271

  3. Geographic variation in the effects of disturbance, fungi, insects, and resilience on the abundance of a globally distributed plant

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Aim: To assess the effects of disturbance, fungi, insects, and resilience on the abundance of a globally distributed ruderal, Centaurea solstitialis, in two regions with contrasting conditions within both native and non-native ranges. Location: The Caucasus (Georgia and Armenia) and south-western...

  4. Maps showing abundance and distribution of mercury in rock samples, Medford 1 degree by 2 degrees Quadrangle, Oregon-California

    USGS Publications Warehouse

    Whittington, Charles L.; Grimes, David J.; Leinz, Reinhard W.

    1985-01-01

    This map presents data on the abundance and distribution of mercury in 3,146 rock samples from the Medford quadrangle. Most of the rock samples were collected incidental to geologic, geochemical, and mineral resources studies in the period from 1974 to 1980, but about 6 percent date from earlier investigations (Wells, 1940; 1956; Wells and others 1949). 

  5. Abundance and distribution of gaseous ammonia and particulate ammonium at Delhi, India

    NASA Astrophysics Data System (ADS)

    Singh, S.; Kulshrestha, U. C.

    2012-12-01

    This study reports abundance and distribution of gaseous NH3 and particulate NH4+ at Delhi. Gaseous NH3 and particulate NH4+ concentrations were measured during pre-monsoon, monsoon and post-monsoon seasons of the years 2010 and 2011. Average concentrations of gaseous NH3 during pre-monsoon, monsoon and post-monsoon seasons were recorded as 26.4, 33.2 and 32.5 μg m-3, respectively. Gaseous NH3 concentrations were the highest during monsoon, thought to be due to decay and decomposition of plants and other biogenic material under wet conditions, leading to increased NH3 emission. The results showed that particulate NH4+ was always lower than the gaseous NH3 during all the seasons. The concentrations of particulate NH4+ were recorded as 11.6, 22.9 and 8.5 μg m-3 during pre-monsoon, monsoon and post-monsoon seasons, respectively. The percent fraction of particulate NH4+ was noticed to be highest during the monsoon season, which is attributed to increased humidity levels favouring partitioning into the aerosol phase. On an average, 33.3% of total N-NHx was present as particulate NH4+. Higher concentrations of NH3 noticed during night time may be due to stable atmospheric conditions. The study highlighted that, as compared with rural sites, urban sites showed higher concentrations of gaseous NH3 in India, which may be due to higher population density, human activities and poor sanitation arrangements.

  6. Acoustic estimates of abundance and distribution of spawning lake trout on Sheboygan Reef in Lake Michigan

    USGS Publications Warehouse

    Warner, D.M.; Claramunt, R.M.; Janssen, J.; Jude, D.J.; Wattrus, N.

    2009-01-01

    Efforts to restore self-sustaining lake trout (Salvelinus namaycush) populations in the Laurentian Great Lakes have had widespread success in Lake Superior; but in other Great Lakes, populations of lake trout are maintained by stocking. Recruitment bottlenecks may be present at a number of stages of the reproduction process. To study eggs and fry, it is necessary to identify spawning locations, which is difficult in deep water. Acoustic sampling can be used to rapidly locate aggregations of fish (like spawning lake trout), describe their distribution, and estimate their abundance. To assess these capabilities for application to lake trout, we conducted an acoustic survey covering 22 km2 at Sheboygan Reef, a deep reef (<40 m summit) in southern Lake Michigan during fall 2005. Data collected with remotely operated vehicles (ROV) confirmed that fish were large lake trout, that lake trout were 1–2 m above bottom, and that spawning took place over specific habitat. Lake trout density exhibited a high degree of spatial structure (autocorrelation) up to a range of ~190 m, and highest lake trout and egg densities occurred over rough substrates (rubble and cobble) at the shallowest depths sampled (36–42 m). Mean lake trout density in the area surveyed (~2190 ha) was 5.8 fish/ha and the area surveyed contained an estimated 9500–16,000 large lake trout. Spatial aggregation in lake trout densities, similarity of depths and substrates at which high lake trout and egg densities occurred, and relatively low uncertainty in the lake trout density estimate indicate that acoustic sampling can be a useful complement to other sampling tools used in lake trout restoration research.

  7. Distribution and Abundance of Opisthorchis viverrini Metacercariae in Cyprinid Fish in Northeastern Thailand

    PubMed Central

    Onsurathum, Sudarat; Boonmars, Thidarut; Pinlaor, Porntip; Hongsrichan, Nuttanan; Chaidee, Apisit; Haonon, Ornuma; Limviroj, Wutipong; Tesana, Smarn; Kaewkes, Sasithorn; Sithithaworn, Paiboon

    2013-01-01

    To increase public health awareness for prevention of opisthorchiasis caused by eating raw freshwater fish, the distribution and abundance of Opisthorchis viverrini metacercariae (OV MC) was investigated in freshwater fish obtained from 20 provinces in northeastern Thailand between April 2011 and February 2012. A cross-sectional survey was conducted on 12,890 fish consisting of 13 species randomly caught from 26 rivers, 10 dams, and 38 ponds/lakes. Fish, were collected in each of the rainy and winter seasons from each province. Fish were identified, counted, weighed, and digested using pepsin-HCl. Samples were examined for OV MC by a sedimentation method, and metacercariae were identified under a stereomicroscope. OV MC were found in 6 species of fish; i.e., Cyclocheilichthys armatus, Puntius orphoides, Hampala dispar, Henicorhynchus siamensis, Osteochilus hasselti, and Puntioplites proctozysron from localities in 13 provinces. Among the sites where OV MC-infected fish were found, 70.0% were dams, 23.7% were ponds/lakes, and 7.7% were rivers. The mean intensity of OV MC ranged from 0.01 to 6.5 cysts per fish (or 1.3-287.5 cysts per kg of fish). A high mean intensity of OV MC per fish (>3 cysts) was found in 5 provinces: Amnat Charoen (6.5 cysts), Nakhon Phanom (4.3), Mukdahan (4.1), Khon Kaen, (3.5) and Si Sa Ket (3.4). In conclusion, OV MC are prevalent in natural cyprinid fish, with the infection rate varying according to fish species and habitats. PMID:24516277

  8. [Species-abundance distribution patterns along succession series of Phyllostachys glauca forest in a limestone mountain].

    PubMed

    Shi, Jian-min; Fan, Cheng-fang; Liu, Yang; Yang, Qing-pei; Fang, Kai; Fan, Fang-li; Yang, Guang-yao

    2015-12-01

    To detect the ecological process of the succession series of Phyllostachys glauca forest in a limestone mountain, five niche models, i.e., broken stick model (BSM), niche preemption model (NPM), dominance preemption model (DPM), random assortment model (RAM) and overlap- ping niche model (ONM) were employed to describe the species-abundance distribution patterns (SDPs) of 15 samples. χ² test and Akaike information criterion (AIC) were used to test the fitting effects of the five models. The results showed that the optimal SDP models for P. glauca forest, bamboo-broadleaved mixed forest and broadleaved forest were DPM (χ² = 35.86, AIC = -69.77), NPM (χ² = 1.60, AIC = -94.68) and NPM (χ² = 0.35, AIC = -364.61), respectively. BSM also well fitted the SDP of bamboo-broadleaved mixed forest and broad-leaved forest, while it was unsuitable to describe the SDP of P. glauca forest. The fittings of RAM and ONM in the three forest types were all rejected by the χ² test and AIC. With the development of community succession from P. glauca forest to broadleaved forest, the species richness and evenness increased, and the optimal SDP model changed from DPM to NPM. It was inferred that the change of ecological process from habitat filtration to interspecific competition was the main driving force of the forest succession. The results also indicated that the application of multiple SDP models and test methods would be beneficial to select the best model and deeply understand the ecological process of community succession. PMID:27111994

  9. Potential metabolic strategies of widely distributed holobionts in the oceanic archipelago of St Peter and St Paul (Brazil).

    PubMed

    Rua, Cintia P J; Gregoracci, Gustavo B; Santos, Eidy O; Soares, Ana Carolina; Francini-Filho, Ronaldo B; Thompson, Fabiano

    2015-06-01

    Sponges are one of the most complex symbiotic communities and while the taxonomic composition of associated microbes has been determined, the biggest challenge now is to uncover their functional role in symbiosis. We investigated the microbiota of two widely distributed sponge species, regarding both their taxonomic composition and their functional roles. Samples of Didiscus oxeata and Scopalina ruetzleri were collected in the oceanic archipelago of St Peter and St Paul and analysed through metagenomics. Sequences generated by 454 pyrosequencing and Ion Torrent were taxonomically and functionally annotated on the MG-RAST server using the GenBank and SEED databases, respectively. Both communities exhibit equivalence in core functions, interestingly played by the most abundant taxa in each community. Conversely, the microbial communities differ in composition, taxonomic diversity and potential metabolic strategies. Functional annotation indirectly suggests differences in preferential pathways of carbon, nitrogen and sulphur metabolisms, which may indicate different metabolic strategies. PMID:25873456

  10. Abundance distributions over the surfaces of magnetic ApBp stars: theoretical predictions

    NASA Astrophysics Data System (ADS)

    Alecian, G.

    2015-12-01

    Recently published empirical abundance maps, obtained through (Zeeman) Doppler mapping, do not currently agree with the abundance structures predicted by means of numerical models of atomic diffusion in magnetic atmospheres of ApBp stars. In a first step towards the resolution of these discrepancies, we present a state of the art grid of equilibrium abundance stratifications in the atmosphere of a magnetic Ap star with Teff = 10 000 K and log g = 4.0. A description of the behaviour of 16 chemical elements including predictions concerning the over- and/or underabundances over the stellar surface is followed by a discussion of the possible influence of presently neglected physical processes.

  11. How climate warming impacts the distribution and abundance of two small flatfish species in the North Sea

    NASA Astrophysics Data System (ADS)

    van Hal, Ralf; Smits, Kalle; Rijnsdorp, Adriaan D.

    2010-07-01

    Climate change, specifically temperature, affects the distribution and densities of species in marine and terrestrial ecosystems. Here, we looked at the effect of temperature during winter and spawning period on latitudinal range shifts and changes in abundance of two non-commercial North Sea fish species, solenette ( Buglossidium luteum) and scaldfish ( Arnoglossus laterna). Both species have increased in abundance and moved to the north since the late 1980s, coinciding with a series of mild winters. In 1996, following a very cold winter, the abundance of both species temporarily decreased as they retracted to the south. The shift in temperature affected adult habitat conditions, allowing them to immigrate into new areas where they subsequently reproduced successfully. We can conclude this because recruitment improved following the increase in abundance. The recruitment relates significantly to the higher adult stock and higher temperatures. The predictions of higher average temperatures and milder winters in the North Sea make it likely that these species will increase further in abundance and move northward. The observed increase in abundance of these small flatfish species will affect the North Sea food web and therefore commercial species, e.g. plaice, by predation on juveniles and competition for benthic food resources.

  12. A wide-band fiber optic frequency distribution system employing thermally controlled phase compensation

    NASA Technical Reports Server (NTRS)

    Johnson, Dean; Calhoun, Malcolm; Sydnor, Richard; Lutes, George

    1993-01-01

    An active wide-band fiber optic frequency distribution system employing a thermally controlled phase compensator to stabilize phase variations induced by environmental temperature changes is described. The distribution system utilizes bidirectional dual wavelength transmission to provide optical feedback of induced phase variations of 100 MHz signals propagating along the distribution cable. The phase compensation considered differs from earlier narrow-band phase compensation designs in that it uses a thermally controlled fiber delay coil rather than a VCO or phase modulation to compensate for induced phase variations. Two advantages of the wide-band system over earlier designs are (1) that it provides phase compensation for all transmitted frequencies, and (2) the compensation is applied after the optical interface rather than electronically ahead of it as in earlier schemes. Experimental results on the first prototype shows that the thermal stabilizer reduces phase variations and Allan deviation by a factor of forty over an equivalent uncompensated fiber optic distribution system.

  13. Jamaica Bay studies VII: Factors affecting the distribution and abundance of ducks in a New York estuary

    NASA Astrophysics Data System (ADS)

    Burger, Joanna; Trout, J. Richard; Wander, Wade; Ritter, Glenn S.

    1984-12-01

    The abundance and distribution of ducks (Anatini, Cairinini, Aythyini, Mergini, Oxyurini) were examined at Jamaica Bay Wildlife Refuge, a coastal estuary on Long Island, New York. The refuge contains a variety of tidal habitats as well two freshwater impoundments. The largest concentrations of diving ducks were present in March and April, and from October through December; while the largest concentrations of dabbling ducks were present from June through December. Thus, diving ducks used the refuge on migration whereas dabbling ducks used the refuge during and following the breeding season. Time of year was thus the most significant factor affecting distribution and abundance. Some species were present all year, including Black Duck Anas rubripes, Mallard A. platyrhynchos, Gadwall A. strepera, and Ruddy Duck Oxyura jamaicensis. Although both dabblers and divers used all areas of the bay, dabblers used both ponds while divers used only the East Pond. Dabbling ducks concentrated in the bay at low tide, and on the ponds at high tide. There were more divers on the bay on a falling tide although tide direction did not influence the abundance or distribution of dabblers. Temperature and wind variables influenced the distribution of all ducks: they used the bay at low temperatures, and rafted in large flocks on the bay in intermediate, Northwest winds. Only the numbers and distribution of dabblers were significantly influenced by cloud cover. We conclude that abiotic factors influence the abundance and distribution of ducks on Jamaica Bay Wildlife Refuge, and that tidal factors should be considered when managing migratory or wintering populations of ducks.

  14. Distribution, abundance, and habitat preferences of Ixodes ricinus (Acari: Ixodidae) in northern Spain.

    PubMed

    Estrada-Peña, A

    2001-05-01

    Ixodes ricinus (L.) was collected by standard dragging in 2,082 different sites in 18 broad vegetation categories in northern Spain to explore the influence of vegetation on its abundance. Of these, 785 sites were surveyed in 1995, 636 in 1996, and 661 in 1997. The impact of habitat features on differences in tick numbers is addressed. The tick was present in low numbers in areas of old, heterogeneous coniferous forests. Ticks appeared to prefer sites that had substantial secondary plant growth such as river canopies, heterogeneous Pinus uncinata forests, mixed forests, and deciduous heterogeneous woods. Highest tick abundance was recorded for sites that contained Quercus spp., as well as for mixed old forests that had many ecotones. I. ricinus was absent in open habitats, homogeneous young coniferous forests, and open hillsides. These differences were attributed to greater shrub cover and litter depth, which created more favorable microclimatic conditions for tick survival. The abundance of I. ricinus nymphs was not homogeneous in sites within the same habitat category and vegetation physiognomy at these sites did not appear to cause differences in tick abundance. Analysis of variance (ANOVA) indicated that variation in tick abundance could be explained by the exposure of the sampled site, at least for some zones within deciduous forest categories. However, this factor did not explain the variation observed in other habitats. Temperature and vegetation (normalized derived vegetation index) features were recorded daily by remotely sensed imagery throughout the study period and the data were used to obtain long-term mean and maximum values of the physical parameters considered. Multiple regression analysis performed between these long-term abiotic factors and nymphal abundance in positive sites showed high relationship (R2 coefficients) for every habitat category and explained >50% of the variation in tick abundance. PMID:11372959

  15. Arbovirus circulation, temporal distribution, and abundance of mosquito species in two Carolina bay habitats.

    PubMed

    Ortiz, D I; Wozniak, A; Tolson, M W; Turner, P E

    2005-01-01

    Carolina bays, a type of geomorphic feature, may be important in the ecology of mosquito vectors in South Carolina. Their hydrology varies from wetland habitats with marked flooding/drying regimes to permanently flooded spring-fed lakes. Moreover, they possess characteristics that contribute to the support of a particularly abundant and diverse invertebrate fauna. Although it has been estimated that 2,700+ bays exist in South Carolina, approximately 97% have been altered; < or = 200 bays remain intact, and only 36 are protected by state-funded conservation projects. We conducted a study in two distinct Carolina bay habitats, Savage Bay Heritage Preserve (SBHP) and Woods Bay State Park (WBSP), from June 1997 to July 1998 to determine mosquito temporal distribution, species composition, and the occurrence of arbovirus activity. The largest mosquito collection was obtained at WBSP (n = 31,172) representing 25 species followed by SBHP (n = 3,940) with 24 species. Anopheles crucians complex were the most common species encountered in both bays. Two virus isolates were obtained from SBHP in 1997: Keystone (KEY) virus from Ochlerotatus atlanticus-tormentor and Cache Valley (CV) virus from Oc. canadensis canadensis. Twenty-nine (29) arbovirus-positive pools were obtained from WBSP: 28 in 1997 and one in 1998. KEY virus was isolated from three pools of Oc. atlanticus-tormentor and Tensaw (TEN) virus was isolated from two pools of An. crucians complex; 10 isolates could not be identified with the sera available. Additionally, 14 pools of An. crucians complex tested positive for Eastern equine encephalitis (EEE) virus antigen. These represent the first record of KEY and CV viruses in South Carolina. Our data indicate the presence of high mosquito density and diversity in both Carolina bay habitats, which may be influenced, in part, by seasonal changes in their hydroperiods. The study of mosquito and arbovirus ecology in Carolina Bay habitats could provide more information on

  16. Abundance, composition, and distribution of crustacean zooplankton in relation to hypolimnetic oxygen depletion in west-central Lake Erie

    USGS Publications Warehouse

    Heberger, Roy F.; Reynolds, James B.

    1977-01-01

    Samples of crustacean zooplankton were collected monthly in west-central Lake Erie in April and June to October 1968, and in July and August 1970, before and during periods of hypolimnetic dissolved oxygen (DO) depletion. The water column at offshore stations was thermally stratified from June through September 1968, and the hypolimnion contained no DO in mid-August of 1968 or 1970. Composition, abundance, and vertical distribution of crustacean zooplankton changed coincidentally with oxygen depletion. From July to early August, zooplankton abundance dropped 79% in 1968 and 50% in 1970. The declines were attributed largely to a sharp decrease in abundance of planktonic Cyclops bicuspidatus thomasi. Zooplankton composition shifted from mainly cyclopoid copepods in July to mainly cladocerans and copepod nauplii in middle to late August. We believe that mortality of adults and dormancy of copepodites in response to anoxia was the probable reason for the late summer decline in planktonic C. b. thomasi.

  17. Detailed abundances of planet-hosting wide binaries. I. Did planet formation imprint chemical signatures in the atmospheres of HD 20782/81?

    SciTech Connect

    Mack III, Claude E.; Stassun, Keivan G.; Schuler, Simon C.; Norris, John

    2014-06-01

    Using high-resolution, high signal-to-noise echelle spectra obtained with Magellan/MIKE, we present a detailed chemical abundance analysis of both stars in the planet-hosting wide binary system HD 20782 + HD 20781. Both stars are G dwarfs, and presumably coeval, forming in the same molecular cloud. Therefore we expect that they should possess the same bulk metallicities. Furthermore, both stars also host giant planets on eccentric orbits with pericenters ≲0.2 AU. Here, we investigate if planets with such orbits could lead to the host stars ingesting material, which in turn may leave similar chemical imprints in their atmospheric abundances. We derived abundances of 15 elements spanning a range of condensation temperature, T {sub C} ≈ 40-1660 K. The two stars are found to have a mean element-to-element abundance difference of 0.04 ± 0.07 dex, which is consistent with both stars having identical bulk metallicities. In addition, for both stars, the refractory elements (T {sub C} >900 K) exhibit a positive correlation between abundance (relative to solar) and T {sub C}, with similar slopes of ≈1×10{sup –4} dex K{sup –1}. The measured positive correlations are not perfect; both stars exhibit a scatter of ≈5×10{sup –5} dex K{sup –1} about the mean trend, and certain elements (Na, Al, Sc) are similarly deviant in both stars. These findings are discussed in the context of models for giant planet migration that predict the accretion of H-depleted rocky material by the host star. We show that a simple simulation of a solar-type star accreting material with Earth-like composition predicts a positive—but imperfect—correlation between refractory elemental abundances and T {sub C}. Our measured slopes are consistent with what is predicted for the ingestion of 10-20 Earths by each star in the system. In addition, the specific element-by-element scatter might be used to distinguish between planetary accretion and Galactic chemical evolution scenarios.

  18. Detailed Abundances of Planet-hosting Wide Binaries. I. Did Planet Formation Imprint Chemical Signatures in the Atmospheres of HD 20782/81?

    NASA Astrophysics Data System (ADS)

    Mack, Claude E., III; Schuler, Simon C.; Stassun, Keivan G.; Norris, John

    2014-06-01

    Using high-resolution, high signal-to-noise echelle spectra obtained with Magellan/MIKE, we present a detailed chemical abundance analysis of both stars in the planet-hosting wide binary system HD 20782 + HD 20781. Both stars are G dwarfs, and presumably coeval, forming in the same molecular cloud. Therefore we expect that they should possess the same bulk metallicities. Furthermore, both stars also host giant planets on eccentric orbits with pericenters lsim0.2 AU. Here, we investigate if planets with such orbits could lead to the host stars ingesting material, which in turn may leave similar chemical imprints in their atmospheric abundances. We derived abundances of 15 elements spanning a range of condensation temperature, T C ≈ 40-1660 K. The two stars are found to have a mean element-to-element abundance difference of 0.04 ± 0.07 dex, which is consistent with both stars having identical bulk metallicities. In addition, for both stars, the refractory elements (T C >900 K) exhibit a positive correlation between abundance (relative to solar) and T C, with similar slopes of ≈1×10-4 dex K-1. The measured positive correlations are not perfect; both stars exhibit a scatter of ≈5×10-5 dex K-1 about the mean trend, and certain elements (Na, Al, Sc) are similarly deviant in both stars. These findings are discussed in the context of models for giant planet migration that predict the accretion of H-depleted rocky material by the host star. We show that a simple simulation of a solar-type star accreting material with Earth-like composition predicts a positive—but imperfect—correlation between refractory elemental abundances and T C. Our measured slopes are consistent with what is predicted for the ingestion of 10-20 Earths by each star in the system. In addition, the specific element-by-element scatter might be used to distinguish between planetary accretion and Galactic chemical evolution scenarios. The data presented herein were obtained at the Las Campanas

  19. Cetacean distribution and abundance in relation to oceanographic domains on the eastern Bering Sea shelf: 1999-2004

    NASA Astrophysics Data System (ADS)

    Friday, Nancy A.; Waite, Janice M.; Zerbini, Alexandre N.; Moore, Sue E.

    2012-06-01

    Visual line transect surveys for cetaceans were conducted on the eastern Bering Sea shelf in association with pollock stock assessment surveys aboard the NOAA ship Miller Freeman in June and July of 1999, 2000, 2002, and 2004. Transect survey effort ranged from 1188 km in 1999 to 3761 km in 2002. Fin whales (Balaenoptera physalus) were the most common large whale in all years except 2004 when humpback whales (Megaptera novaeangliae) were more abundant. Dall's porpoise (Phocoenoides dalli) were the most common small cetacean in all years. Abundance estimates were calculated by year for each oceanographic domain: coastal, middle, and outer/slope. The middle and outer/slope domains were divided into two strata ("north" and "south") because of variable survey effort. The distribution and abundance of baleen whales changed between the earlier (colder) and later (warmer) survey years. Fin whales consistently occupied the outer shelf and secondarily the middle shelf, and their abundance was an order of magnitude greater in cold compared to warm years. Humpback whales "lived on the margin" of the northern Alaska Peninsula, eastern Aleutian Islands and Bristol Bay; their preferred habitat is possibly associated with areas of high prey availability due to nutrient upwelling and aggregation mechanisms. Minke whales (Balaenoptera acutorostrata) occur shoreward of fin whales in the outer and middle shelf and in coastal habitats along the Alaska Peninsula. The highest abundance for this species was observed in a cold (1999) year. No clear relationship emerged for odontocetes with regard to warm and cold years. Dall's porpoise occupied both outer and middle domains and harbor porpoise (Phocoena phocoena) were more common in middle and coastal domains. This study provided a unique, broad-scale assessment of cetacean distribution and abundance on the eastern Bering Sea shelf and a baseline for future comparisons.

  20. Detecting Distributed Network Traffic Anomaly with Network-Wide Correlation Analysis

    NASA Astrophysics Data System (ADS)

    Zonglin, Li; Guangmin, Hu; Xingmiao, Yao; Dan, Yang

    2008-12-01

    Distributed network traffic anomaly refers to a traffic abnormal behavior involving many links of a network and caused by the same source (e.g., DDoS attack, worm propagation). The anomaly transiting in a single link might be unnoticeable and hard to detect, while the anomalous aggregation from many links can be prevailing, and does more harm to the networks. Aiming at the similar features of distributed traffic anomaly on many links, this paper proposes a network-wide detection method by performing anomalous correlation analysis of traffic signals' instantaneous parameters. In our method, traffic signals' instantaneous parameters are firstly computed, and their network-wide anomalous space is then extracted via traffic prediction. Finally, an anomaly is detected by a global correlation coefficient of anomalous space. Our evaluation using Abilene traffic traces demonstrates the excellent performance of this approach for distributed traffic anomaly detection.

  1. Distribution, density, and abundance of pack-ice seals in the Amundsen and Ross Seas, Antarctica

    NASA Astrophysics Data System (ADS)

    Bengtson, John L.; Laake, Jeff L.; Boveng, Peter L.; Cameron, Michael F.; Bradley Hanson, M.; Stewart, Brent S.

    2011-05-01

    We made three sets of population surveys of the four species of ice-inhabiting phocid pinnipeds in the Ross and Amundsen Seas between 26 December 1999 and 24 March 2000 using icebreakers and helicopters deployed from those icebreakers. We used line transect methods to survey 23,671 km by helicopter and 3,694 km by ship accounting for a total coverage of 53,217 km 2. We detected and identified 11,308 seals in 7,104 groups and estimated their abundance from estimates of densities using distance sampling methods and corrections for probability of haul out of seals derived from satellite telemetry of tagged seals. Crabeater seals were most abundant (ca 1.7 million) followed by Weddell seals (330,000), Ross seals (22,600), and leopard seals (15,000). Our estimates of abundance are difficult to directly compare with earlier estimates because of geographic areas covered and by our improvements in survey and analytical methods. Notwithstanding these limitations and with some adjustments for differences in methods, we found that our estimates of abundance for crabeater seals are similar to those from the most recent surveys in the Ross and Amundsen Seas and along the George-Oates Coast. Our estimates for Weddell seals are the first for the broad areas of pack ice that we surveyed in the Ross and Amundsen Seas but indicate that these habitats are ecologically important to this species. Our estimates of abundance of Ross seals were relatively similar to estimates for surveys in these areas in the 1970s and 1980s whereas our estimates of abundance of leopard seals were substantially lower.

  2. Abundance and distribution of benthic macroinvertebrates in offshore soft sediments in Western Lake Huron, 2001-2007

    USGS Publications Warehouse

    French, J. R. P., III; Schaeffer, J.S.; Roseman, E.F.; Kiley, C.S.; Fouilleroux, A.

    2009-01-01

    Invasive species have had major impacts on the Great Lakes. This is especially true of exotic dreissenid mussels which are associated with decreased abundance of native macroinvertebrates and changes in food availability for fish. Beginning in 2001, we added a benthic macroinvertebrate survey to the USGS-Great Lakes Science Center's annual fall prey fish assessment of Lake Huron to monitor abundance of macrobenthos. Mean abundance of Diporeia, the most abundant benthic taxon in Lake Huron reported by previous investigators, declined greatly between 2001 and 2007. Diporeia was virtually absent at 27-m sites by 2001, decreased and was lost completely from 46-m depths by 2006, but remained present at reduced densities at 73-m sites. Dreissenids in our samples were almost entirely quagga mussels Dreissena bugensis. Zebra mussels Dreissena polymorpha were virtually absent from our samples, suggesting that they were confined to nearshore areas shallower than we sampled. Loss of Diporeia at individual sites was associated with arrival of quagga mussels, even when mussel densities were low. Quagga mussel density peaked during 2002, then decreased thereafter. During the study quagga mussels became established at most 46-m sites, but remained rare at 73-m sites. Length frequency distributions suggest that initial widespread recruitment may have occurred during 2001-2002. Like other Great Lakes, Lake Huron quagga mussels were associated with decreased abundance of native taxa, but negative effects occurred even though dreissenid densities were much lower. Dreissenid effects may extend well into deep oligotrophic habitats of Lake Huron.

  3. Abundance and spatial-temporal distribution of the shrimp Xiphopenaeus kroyeri (Decapoda: Penaeidae): an exploited species in southeast Brazil.

    PubMed

    Silva, E R; Sancinetti, G S; Fransozo, A; Azevedo, A; Costa, R C

    2016-04-19

    This study evaluated the abundance and spatial-temporal distribution of the shrimp Xiphopenaeus kroyeri in the coastal region of Macaé, state of Rio de Janeiro, southeastern Brazil. Monthly samples were obtained from March 2008 to February 2010 in six stations located in Inner (5, 10 and 15m depth) and Outer (25, 35 and 45m depth) areas. It was used a commercial fishery boat equipped with an otter-trawl net (3.5 m mouth width, mesh size 20mm and 15mm in the cod end). Water samples were taken for determination of temperature and salinity, and sediment samples for determination of texture and organic matter content. A total of 7146 shrimps were sampled. About 95% of all shrimps were caught in the shallow area, i.e., depths <20m. Greatest abundances were recorded in winter and spring. No significant correlation was observed between sediment (phi) and abundance. The distribution of X. kroyeri in the studied area was closely related to seasonal cold waterfront of the South Atlantic Central Water (SACW) and temperature was the main factor affecting the species abundance. PMID:27097079

  4. Distributed Storage Healthcare — The Basis of a Planet-Wide Public Health Care Network

    PubMed Central

    Kakouros, Nikolaos

    2013-01-01

    Background: As health providers move towards higher levels of information technology (IT) integration, they become increasingly dependent on the availability of the electronic health record (EHR). Current solutions of individually managed storage by each healthcare provider focus on efforts to ensure data security, availability and redundancy. Such models, however, scale poorly to a future of a planet-wide public health-care network (PWPHN). Our aim was to review the research literature on distributed storage systems and propose methods that may aid the implementation of a PWPHN. Methods: A systematic review was carried out of the research dealing with distributed storage systems and EHR. A literature search was conducted on five electronic databases: Pubmed/Medline, Cinalh, EMBASE, Web of Science (ISI) and Google Scholar and then expanded to include non-authoritative sources. Results: The English National Health Service Spine represents the most established country-wide PHN but is limited in deployment and remains underused. Other, literature identified and established distributed EHR attempts are more limited in scope. We discuss the currently available distributed file storage solutions and propose a schema of how one of these technologies can be used to deploy a distributed storage of EHR with benefits in terms of enhanced fault tolerance and global availability within the PWPHN. We conclude that a PWPHN distributed health care record storage system is technically feasible over current Internet infrastructure. Nonetheless, the socioeconomic viability of PWPHN implementations remains to be determined. PMID:23459171

  5. Distribution and abundance of hematophagous flies (Glossinidae, Stomoxys, and Tabanidae) in two national parks of Gabon.

    PubMed

    Bitome Essono, Paul Yannick; Dechaume-Moncharmont, François-Xavier; Mavoungou, Jacques; Obiang Mba, Régis; Duvallet, Gérard; Bretagnolle, François

    2015-01-01

    In order to minimize risks of pathogen transmission with the development of ecotourism in Gabon, a seasonal inventory has been performed in five contrasted biotopes in Ivindo (INP) and Moukalaba-Doudou (MDNP) National Parks. A total of 10,033 hematophagous flies were captured. The Glossinidae, with six different species identified, was the most abundant group and constitutes about 60% of the captured flies compared to the Stomoxys (6 species also identified) and Tabanidae with 28% and 12%, respectively. The Glossinidae showed a higher rate of capture in primary forest and in research camps. In INP, the Stomoxys showed a higher rate of capture in secondary forest and at village borders, whereas in MDNP the Stomoxys were captured more in the savannah area. Thus, each fly group seemed to reach maximum abundance in different habitats. The Glossinidae were more abundant in primary forest and near research camps while Stomoxys were more abundant in secondary forest and savannah. The Tabanidae did not show a clear habitat preference. PMID:26187781

  6. Distribution and abundance of hematophagous flies (Glossinidae, Stomoxys, and Tabanidae) in two national parks of Gabon

    PubMed Central

    Bitome Essono, Paul Yannick; Dechaume-Moncharmont, François-Xavier; Mavoungou, Jacques; Obiang Mba, Régis; Duvallet, Gérard; Bretagnolle, François

    2015-01-01

    In order to minimize risks of pathogen transmission with the development of ecotourism in Gabon, a seasonal inventory has been performed in five contrasted biotopes in Ivindo (INP) and Moukalaba-Doudou (MDNP) National Parks. A total of 10,033 hematophagous flies were captured. The Glossinidae, with six different species identified, was the most abundant group and constitutes about 60% of the captured flies compared to the Stomoxys (6 species also identified) and Tabanidae with 28% and 12%, respectively. The Glossinidae showed a higher rate of capture in primary forest and in research camps. In INP, the Stomoxys showed a higher rate of capture in secondary forest and at village borders, whereas in MDNP the Stomoxys were captured more in the savannah area. Thus, each fly group seemed to reach maximum abundance in different habitats. The Glossinidae were more abundant in primary forest and near research camps while Stomoxys were more abundant in secondary forest and savannah. The Tabanidae did not show a clear habitat preference. PMID:26187781

  7. Carbon amendment and soil depth affect the distribution and abundance of denitrifiers in agricultural soils.

    PubMed

    Barrett, M; Khalil, M I; Jahangir, M M R; Lee, C; Cardenas, L M; Collins, G; Richards, K G; O'Flaherty, V

    2016-04-01

    The nitrite reductase (nirS and nirK) and nitrous oxide reductase-encoding (nosZ) genes of denitrifying populations present in an agricultural grassland soil were quantified using real-time polymerase chain reaction (PCR) assays. Samples from three separate pedological depths at the chosen site were investigated: horizon A (0-10 cm), horizon B (45-55 cm), and horizon C (120-130 cm). The effect of carbon addition (treatment 1, control; treatment 2, glucose-C; treatment 3, dissolved organic carbon (DOC)) on denitrifier gene abundance and N2O and N2 fluxes was determined. In general, denitrifier abundance correlated well with flux measurements; nirS was positively correlated with N2O, and nosZ was positively correlated with N2 (P < 0.03). Denitrifier gene copy concentrations per gram of soil (GCC) varied in response to carbon type amendment (P < 0.01). Denitrifier GCCs were high (ca. 10(7)) and the bac:nirK, bac:nirS, bac:nir (T) , and bac:nosZ ratios were low (ca. 10(-1)/10) in horizon A in all three respective treatments. Glucose-C amendment favored partial denitrification, resulting in higher nir abundance and higher N2O fluxes compared to the control. DOC amendment, by contrast, resulted in relatively higher nosZ abundance and N2 emissions, thus favoring complete denitrification. We also noted soil depth directly affected bacterial, archaeal, and denitrifier abundance, possibly due to changes in soil carbon availability with depth. PMID:26762934

  8. Patterns in the abundance and size-distribution of syngnathid fishes among habitats in a seagrass-dominated marine environment

    NASA Astrophysics Data System (ADS)

    Kendrick, A. J.; Hyndes, G. A.

    2003-07-01

    Syngnathid fishes were sampled using a 1 m wide beam trawl during the day and night in each season from summer 1996/1997 to summer 1997/1998 in five habitat types in an approximately 90 km 2 area located on the lower west coast of Australia. The seagrasses Amphibolis griffithii, Posidonia sinuosa and Posidonia coriacea and shallow unvegetated sand were all in depths of 4-9 m, while deep habitat, which comprised mainly bare sand with isolated patches of the seagrasses Heterozostera tasmanica and Halophila ovalis, occurred at depths of 12-16 m. While A. griffithii and P. sinuosa each formed dense monospecific meadows, P. coriacea occurred in sparse clumps surrounded by areas of bare sand and patches of H. tasmanica. While catches of spotted pipefish Stigmatopora argus occurred mainly in P. sinuosa and P. coriacea, individuals of this species that exceeded ca. 55 mm in snout-vent length were far more abundant in the former habitat whereas smaller fish occurred mostly in the latter. Densities of S. argus were similar in P. sinuosa and P. coriacea, but differed between seasons, and a season/habitat interaction was present. In contrast, wide-bodied pipefish Stigmatopora nigra were collected mainly in P. coriacea and deep habitat and, although the densities were greater in P. coriacea than in deep habitat, the size-distributions of this species in these habitats were similar. Notably, S. nigra was never collected in P. sinuosa. Although less abundant than the above pipefish, the long-snouted pipefish Vanacampus poecilolaemus was collected almost exclusively in P. sinuosa. Few syngnathids were collected from shallow unvegetated sand or from A. griffithii, which differed markedly in plant structure from both Posidonia species. It is suggested that these syngnathid species occupy habitats that best enable them to remain inconspicuous to predators. Both S. argus and S. nigra have green or brown colouration and mimic strap-like seagrass leaves which they grasp with prehensile

  9. Ductility of metal alloys with grain size distribution in a wide range of strain rates

    NASA Astrophysics Data System (ADS)

    Skripnyak, Vladimir V.; Skripnyak, Nataliya V.; Skripnyak, Evgeniya G.

    Ductility of ultrafine grained (UFG) metal alloys with a distribution of grain size was investigated in wide loading conditions by numerical simulation. The multiscale models with a unimodal and a bimodal grain size distributions were developed using the data of structure research of hexagonal close packed and face center cubic UFG alloys. Macroscopic fracture is considered as a result of the formation of percolation clusters of damage at the mesoscopic level. The critical fracture strain of UFG alloys on the mesoscale level depends on the relative volumes of coarse grains. The nucleation of damages at quasi-static and dynamic loading is associated with strain localization in UFG partial volumes with bimodal grain size distribution. The concentration of damages arise in the vicinity of the boundaries of coarse and ultrafine grains. The occurrence of a bimodal grain size distributions causes the increase of UFG alloys' ductility, but decrease of their tensile strength. Linkoping University, Sweden.

  10. Spatial distribution and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in mangrove sediments

    PubMed Central

    Li, Meng; Cao, Huiluo; Hong, Yiguo

    2010-01-01

    We investigated the diversity, spatial distribution, and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in sediment samples of different depths collected from a transect with different distances to mangrove forest in the territories of Hong Kong. Both the archaeal and bacterial amoA genes (encoding ammonia monooxygenase subunit A) from all samples supported distinct phylogenetic groups, indicating the presences of niche-specific AOA and AOB in mangrove sediments. The higher AOB abundances than AOA in mangrove sediments, especially in the vicinity of the mangrove trees, might indicate the more important role of AOB on nitrification. The spatial distribution showed that AOA had higher diversity and abundance in the surface layer sediments near the mangrove trees (0 and 10 m) but lower away from the mangrove trees (1,000 m), and communities of AOA could be clustered into surface and bottom sediment layer groups. In contrast, AOB showed a reverse distributed pattern, and its communities were grouped by the distances between sites and mangrove trees, indicating mangrove trees might have different influences on AOA and AOB community structures. Furthermore, the strong correlations among archaeal and bacterial amoA gene abundances and their ratio with NH4+, salinity, and pH of sediments indicated that these environmental factors have strong influences on AOA and AOB distributions in mangrove sediments. In addition, AOA diversity and abundances were significantly correlated with hzo gene abundances, which encodes the key enzyme for transformation of hydrazine into N2 in anaerobic ammonium-oxidizing (anammox) bacteria, indicating AOA and anammox bacteria may interact with each other or they are influenced by the same controlling factors, such as NH4+. The results provide a better understanding on using mangrove wetlands as biological treatment systems for removal of nutrients. Electronic supplementary material The online version of this

  11. Temporal changes in euphausiid distribution and abundance in North Atlantic cold-core rings in relation to the surrounding waters

    NASA Astrophysics Data System (ADS)

    Endo, Yoshinari; Wiebe, Peter H.

    2007-02-01

    The species composition of euphausiids was investigated in relationship to the hydrographic conditions in the North Atlantic cold-core rings (CCR) and adjacent waters to elucidate species succession in evolving water masses. Using data, dating back to the 1970s, from as many CCRs as possible and selecting typical cases where no major physical perturbations occurred, a general pattern of euphausiid succession and change in vertical distribution in rings with time was obtained. This pattern was related to the general distribution of euphausiids in the northwestern North Atlantic Ocean, aiming at providing basic information on probable response of North Atlantic marine ecosystem to global warming. Of the 34 euphausiid species identified, 5 were cold-water species, 17 were warm-water species, 6 were wide-ranging warm-water species, 1 was transitional, 4 were cosmopolitan and the remaining was Thysanoessa parva. Among cold-water species, Euphausia krohni and Nematoscelis megalops were dominant in CCRs. E. krohni became rare in rings older than 6 months, whereas N. megalops survived longer, being abundant in some rings of 9 months or older, by staying within its preferred temperature range as the CCR elevated isotherms sank to depths where they are normally found in the Sargasso Sea and because it is an omnivore-carnivore. Among warm-water species, epipelagic species appeared first in rings, corresponding to the physical change occurring most rapidly in the surface layers. Mesopelagic species appeared later. Cold-water species made up 65-85% of the total euphausiid population in number in younger rings (1-5 months old), while warm-water species contributed only 2-7%. Wide-ranging warm-water species made up about up to one fourth of the total in rings 5 and 7 months old. Warm-water species, mainly E. brevis, increased in older rings (9 months old or older) and made up 50% of the total in the oldest ring. The contribution of cold-water species decreased to 14% in older

  12. The Baltic Macoma: abundance and distribution of an important winter food of diving ducks in Chesapeake Bay

    USGS Publications Warehouse

    Jorde, D.G.; Haramis, G.M.

    1997-01-01

    Poor water quality and widespread depletion of wild celery (Vallisneria americana) and other submerged aquatic plants important as waterfowl foods has resulted in the continued dependence of canvasbacks (Aythya valisineria) on Baltic clams (Macoma balthica) as their primary winter food. Despite this dependence, no information exists regarding the distribution and abundance of Baltic clams, and changes that occur in Baltic clam populations over time. We conducted benthic surveys to determine the distribution and abundance of Macoma balthica and M. mitchelli in major tributaries of the upper and middle Chesapeake Bay. Tributaries sampled included the Chester River south to Monie Bay on the Eastern Shore, and Middle River to the Potomac River on the western shore of Maryland. Data on depth, bottom type, shellfish, and submerged aquatic vegetation were recorded. The Baltic clam had the highest frequency of occurrence (50%), followed by M. mitchelli (36%). Other species of clams occurred in less than 14% of the 2995 sites sampled. In addition, every third month since June 1991, we have studied seasonal changes in Baltic clam abundance and recruitment at 13 high abundance sites. Recruitment was recorded at only one high density site (97% increase) between June and September transect surveys. Clam length histograms clearly indicated a new year class and depletion of older cohorts. Average summer decline in Baltic clam abundance at the other 12 sites was 59% and ranged from -11% to -97%. Based on clam length, younger cohorts were depleted at a higher rate. More than half of the Baltic clam population was depleted during the summer and spring recruitment was low.

  13. Seasonal distribution and historic trends in abundance of white sharks, Carcharodon carcharias, in the western North Atlantic Ocean.

    PubMed

    Curtis, Tobey H; McCandless, Camilla T; Carlson, John K; Skomal, Gregory B; Kohler, Nancy E; Natanson, Lisa J; Burgess, George H; Hoey, John J; Pratt, Harold L

    2014-01-01

    Despite recent advances in field research on white sharks (Carcharodon carcharias) in several regions around the world, opportunistic capture and sighting records remain the primary source of information on this species in the northwest Atlantic Ocean (NWA). Previous studies using limited datasets have suggested a precipitous decline in the abundance of white sharks from this region, but considerable uncertainty in these studies warrants additional investigation. This study builds upon previously published data combined with recent unpublished records and presents a synthesis of 649 confirmed white shark records from the NWA compiled over a 210-year period (1800-2010), resulting in the largest white shark dataset yet compiled from this region. These comprehensive records were used to update our understanding of their seasonal distribution, relative abundance trends, habitat use, and fisheries interactions. All life stages were present in continental shelf waters year-round, but median latitude of white shark occurrence varied seasonally. White sharks primarily occurred between Massachusetts and New Jersey during summer and off Florida during winter, with broad distribution along the coast during spring and fall. The majority of fishing gear interactions occurred with rod and reel, longline, and gillnet gears. Historic abundance trends from multiple sources support a significant decline in white shark abundance in the 1970s and 1980s, but there have been apparent increases in abundance since the 1990s when a variety of conservation measures were implemented. Though the white shark's inherent vulnerability to exploitation warrants continued protections, our results suggest a more optimistic outlook for the recovery of this iconic predator in the Atlantic. PMID:24918579

  14. Seasonal Distribution and Historic Trends in Abundance of White Sharks, Carcharodon carcharias, in the Western North Atlantic Ocean

    PubMed Central

    Curtis, Tobey H.; McCandless, Camilla T.; Carlson, John K.; Skomal, Gregory B.; Kohler, Nancy E.; Natanson, Lisa J.; Burgess, George H.; Hoey, John J.; Pratt, Harold L.

    2014-01-01

    Despite recent advances in field research on white sharks (Carcharodon carcharias) in several regions around the world, opportunistic capture and sighting records remain the primary source of information on this species in the northwest Atlantic Ocean (NWA). Previous studies using limited datasets have suggested a precipitous decline in the abundance of white sharks from this region, but considerable uncertainty in these studies warrants additional investigation. This study builds upon previously published data combined with recent unpublished records and presents a synthesis of 649 confirmed white shark records from the NWA compiled over a 210-year period (1800-2010), resulting in the largest white shark dataset yet compiled from this region. These comprehensive records were used to update our understanding of their seasonal distribution, relative abundance trends, habitat use, and fisheries interactions. All life stages were present in continental shelf waters year-round, but median latitude of white shark occurrence varied seasonally. White sharks primarily occurred between Massachusetts and New Jersey during summer and off Florida during winter, with broad distribution along the coast during spring and fall. The majority of fishing gear interactions occurred with rod and reel, longline, and gillnet gears. Historic abundance trends from multiple sources support a significant decline in white shark abundance in the 1970s and 1980s, but there have been apparent increases in abundance since the 1990s when a variety of conservation measures were implemented. Though the white shark's inherent vulnerability to exploitation warrants continued protections, our results suggest a more optimistic outlook for the recovery of this iconic predator in the Atlantic. PMID:24918579

  15. Abundance, depth distribution, and composition of aerobic bacteriochlorophyll a-producing bacteria in four basins of the central Baltic Sea.

    PubMed

    Salka, Ivette; Moulisová, Vladimíra; Koblízek, Michal; Jost, Günter; Jürgens, Klaus; Labrenz, Matthias

    2008-07-01

    The abundance, vertical distribution, and diversity of aerobic anoxygenic phototrophic bacteria (AAP) were studied at four basins of the Baltic Sea. AAP were enumerated by infrared epifluorescence microscopy, and their diversity was analyzed by using pufM gene clone libraries. In addition, numbers of CFU containing the pufM gene were determined, and representative strains were isolated. Both approaches indicated that AAP reached maximal abundance in the euphotic zone. Maximal AAP abundance was 2.5 x 10(5) cells ml(-1) (11% of total prokaryotes) or 1.0 x 10(3) CFU ml(-1) (9 to 10% of total CFU). Environmental pufM clone sequences were grouped into 11 operational taxonomic units phylogenetically related to cultivated members of the Alpha-, Beta-, and Gammaproteobacteria. In spite of varying pufM compositions, five clones were present in all libraries. Of these, Jannaschia-related clones were always found in relative abundances representing 25 to 30% of the total AAP clones. The abundances of the other clones varied. Clones potentially affiliated with typical freshwater Betaproteobacteria sequences were present at three Baltic Sea stations, whereas clones grouping with Loktanella represented 40% of the total cell numbers in the Gotland Basin. For three alphaproteobacterial clones, probable pufM phylogenetic relationships were supported by 16S rRNA gene analyses of Baltic AAP isolates, which showed nearly identical pufM sequences. Our data indicate that the studied AAP assemblages represented a mixture of marine and freshwater taxa, thus characterizing the Baltic Sea as a "melting pot" of abundant, polyphyletic aerobic photoheterotrophic bacteria. PMID:18502937

  16. Motion Trajectories for Wide-area Surveying with a Rover-based Distributed Spectrometer

    NASA Technical Reports Server (NTRS)

    Tunstel, Edward; Anderson, Gary; Wilson, Edmond

    2006-01-01

    A mobile ground survey application that employs remote sensing as a primary means of area coverage is highlighted. It is distinguished from mobile robotic area coverage problems that employ contact or proximity-based sensing. The focus is on a specific concept for performing mobile surveys in search of biogenic gases on planetary surfaces using a distributed spectrometer -- a rover-based instrument designed for wide measurement coverage of promising search areas. Navigation algorithms for executing circular and spiral survey trajectories are presented for widearea distributed spectroscopy and evaluated based on area covered and distance traveled.

  17. Abundance and distribution of mineral components associated with Moses Rock (kimberlite) diatreme

    NASA Technical Reports Server (NTRS)

    Mustard, J. F.; Pieters, C. M.

    1986-01-01

    The surface mineralogy in and around Moses Rock diatreme, a kimberlite-bearing dike in SW Utah, was examined using internally calibrated Airborne Imaging Spectrometer (AIS) data. Distinct near-infrared absorption characteristics of clays, gypsum, and serpentine (a key marker for kinberlite concentration) allowed the surface units containing these components to be identified spatially and the relative abundance of each component measured. Within the dike itself, channels and dispersed components of kimberlite and blocks of country rocks were accurately determined.

  18. Genome-wide distribution of genetic diversity and linkage disequilibrium in elite sugar beet germplasm

    PubMed Central

    2011-01-01

    Background Characterization of population structure and genetic diversity of germplasm is essential for the efficient organization and utilization of breeding material. The objectives of this study were to (i) explore the patterns of population structure in the pollen parent heterotic pool using different methods, (ii) investigate the genome-wide distribution of genetic diversity, and (iii) assess the extent and genome-wide distribution of linkage disequilibrium (LD) in elite sugar beet germplasm. Results A total of 264 and 238 inbred lines from the yield type and sugar type inbreds of the pollen parent heterotic gene pools, respectively, which had been genotyped with 328 SNP markers, were used in this study. Two distinct subgroups were detected based on different statistical methods within the elite sugar beet germplasm set, which was in accordance with its breeding history. MCLUST based on principal components, principal coordinates, or lapvectors had high correspondence with the germplasm type information as well as the assignment by STRUCTURE, which indicated that these methods might be alternatives to STRUCTURE for population structure analysis. Gene diversity and modified Roger's distance between the examined germplasm types varied considerably across the genome, which might be due to artificial selection. This observation indicates that population genetic approaches could be used to identify candidate genes for the traits under selection. Due to the fact that r2 >0.8 is required to detect marker-phenotype association explaining less than 1% of the phenotypic variance, our observation of a low proportion of SNP loci pairs showing such levels of LD suggests that the number of markers has to be dramatically increased for powerful genome-wide association mapping. Conclusions We provided a genome-wide distribution map of genetic diversity and linkage disequilibrium for the elite sugar beet germplasm, which is useful for the application of genome-wide association

  19. Prevalent Ciliate Symbiosis on Copepods: High Genetic Diversity and Wide Distribution Detected Using Small Subunit Ribosomal RNA Gene

    PubMed Central

    Guo, Zhiling; Liu, Sheng; Hu, Simin; Li, Tao; Huang, Yousong; Liu, Guangxing; Zhang, Huan; Lin, Senjie

    2012-01-01

    Toward understanding the genetic diversity and distribution of copepod-associated symbiotic ciliates and the evolutionary relationships with their hosts in the marine environment, we developed a small subunit ribosomal RNA gene (18S rDNA)-based molecular method and investigated the genetic diversity and genotype distribution of the symbiotic ciliates on copepods. Of the 10 copepod species representing six families collected from six locations of Pacific and Atlantic Oceans, 9 were found to harbor ciliate symbionts. Phylogenetic analysis of the 391 ciliate 18S rDNA sequences obtained revealed seven groups (ribogroups), six (containing 99% of all the sequences) belonging to subclass Apostomatida, the other clustered with peritrich ciliate Vorticella gracilis. Among the Apostomatida groups, Group III were essentially identical to Vampyrophrya pelagica, and the other five groups represented the undocumented ciliates that were close to Vampyrophrya/Gymnodinioides/Hyalophysa. Group VI ciliates were found in all copepod species but one (Calanus sinicus), and were most abundant among all ciliate sequences obtained, indicating that they are the dominant symbiotic ciliates universally associated with copepods. In contrast, some ciliate sequences were found only in some of the copepods examined, suggesting the host selectivity and geographic differentiation of ciliates, which requires further verification by more extensive sampling. Our results reveal the wide occurrence and high genetic diversity of symbiotic ciliates on marine copepods and highlight the need to systematically investigate the host- and geography-based genetic differentiation and ecological roles of these ciliates globally. PMID:23024768

  20. Geo-Referenced, Abundance Calibrated Ocean Distribution of Chinook Salmon (Oncorhynchus tshawytscha) Stocks across the West Coast of North America

    PubMed Central

    Bellinger, M. Renee; Banks, Michael A.; Bates, Sarah J.; Crandall, Eric D.; Garza, John Carlos; Sylvia, Gil; Lawson, Peter W.

    2015-01-01

    Understanding seasonal migration and localized persistence of populations is critical for effective species harvest and conservation management. Pacific salmon (genus Oncorhynchus) forecasting models predict stock composition, abundance, and distribution during annual assessments of proposed fisheries impacts. Most models, however, fail to account for the influence of biophysical factors on year-to-year fluctuations in migratory distributions and stock-specific survival. In this study, the ocean distribution and relative abundance of Chinook salmon (O. tshawytscha) stocks encountered in the California Current large marine ecosystem, U.S.A were inferred using catch-per-unit effort (CPUE) fisheries and genetic stock identification data. In contrast to stock distributions estimated through coded-wire-tag recoveries (typically limited to hatchery salmon), stock-specific CPUE provides information for both wild and hatchery fish. Furthermore, in contrast to stock composition results, the stock-specific CPUE metric is independent of other stocks and is easily interpreted over multiple temporal or spatial scales. Tests for correlations between stock-specific CPUE and stock composition estimates revealed these measures diverged once proportional contributions of locally rare stocks were excluded from data sets. A novel aspect of this study was collection of data both in areas closed to commercial fisheries and during normal, open commercial fisheries. Because fishing fleet efficiency influences catch rates, we tested whether CPUE differed between closed area (non-retention) and open area (retention) data sets. A weak effect was indicated for some, but not all, analyzed cases. Novel visualizations produced from stock-specific CPUE-based ocean abundance facilitates consideration of how highly refined, spatial and genetic information could be incorporated in ocean fisheries management systems and for investigations of biogeographic factors that influence migratory

  1. Geo-Referenced, Abundance Calibrated Ocean Distribution of Chinook Salmon (Oncorhynchus tshawytscha) Stocks across the West Coast of North America.

    PubMed

    Bellinger, M Renee; Banks, Michael A; Bates, Sarah J; Crandall, Eric D; Garza, John Carlos; Sylvia, Gil; Lawson, Peter W

    2015-01-01

    Understanding seasonal migration and localized persistence of populations is critical for effective species harvest and conservation management. Pacific salmon (genus Oncorhynchus) forecasting models predict stock composition, abundance, and distribution during annual assessments of proposed fisheries impacts. Most models, however, fail to account for the influence of biophysical factors on year-to-year fluctuations in migratory distributions and stock-specific survival. In this study, the ocean distribution and relative abundance of Chinook salmon (O. tshawytscha) stocks encountered in the California Current large marine ecosystem, U.S.A were inferred using catch-per-unit effort (CPUE) fisheries and genetic stock identification data. In contrast to stock distributions estimated through coded-wire-tag recoveries (typically limited to hatchery salmon), stock-specific CPUE provides information for both wild and hatchery fish. Furthermore, in contrast to stock composition results, the stock-specific CPUE metric is independent of other stocks and is easily interpreted over multiple temporal or spatial scales. Tests for correlations between stock-specific CPUE and stock composition estimates revealed these measures diverged once proportional contributions of locally rare stocks were excluded from data sets. A novel aspect of this study was collection of data both in areas closed to commercial fisheries and during normal, open commercial fisheries. Because fishing fleet efficiency influences catch rates, we tested whether CPUE differed between closed area (non-retention) and open area (retention) data sets. A weak effect was indicated for some, but not all, analyzed cases. Novel visualizations produced from stock-specific CPUE-based ocean abundance facilitates consideration of how highly refined, spatial and genetic information could be incorporated in ocean fisheries management systems and for investigations of biogeographic factors that influence migratory

  2. Effect of land cover, habitat fragmentation and ant colonies on the distribution and abundance of shrews in southern California

    USGS Publications Warehouse

    Laakkonen, J.; Fisher, R.N.; Case, T.J.

    2001-01-01

    1. Because effects of habitat fragmentation and anthropogenic disturbance on native animals have been relatively little studied in arid areas and in insectivores, we investigated the roles of different land covers, habitat fragmentation and ant colonies on the distribution and abundance of shrews, Notiosorex crawfordi and Sorex ornatus, in southern California. 2. Notiosorex crawfordi was the numerically dominant species (trap-success rate 0.52) occurring in 21 of the 22 study sites in 85% of the 286 pitfall arrays used in this study. Sorex ornatus was captured in 14 of the sites, in 52% of the arrays with a total trap-success rate of 0.2. Neither of the species was found in one of the sites. 3. The population dynamics of the two shrew species were relatively synchronous during the 4-5-year study; the peak densities usually occurred during the spring. Precipitation had a significant positive effect, and maximum temperature a significant negative effect on the trap-success rate of S. ornatus. 4. Occurrence and abundance of shrews varied significantly between sites and years but the size of the landscape or the study site had no effect on the abundance of shrews. The amount of urban edge had no significant effect on the captures of shrews but increased edge allows invasion of the Argentine ants, which had a highly significant negative impact on the abundance of N. crawfordi. 5. At the trap array level, the percentage of coastal sage scrub flora had a significant positive, and the percentage of other flora had a significant negative effect on the abundance of N. crawfordi. The mean canopy height and the abundance of N. crawfordi had a significant positive effect on the occurrence of S. ornatus. 6. Our study suggests that the loss of native coastal sage scrub flora and increasing presence of Argentine ant colonies may significantly effect the distribution and abundance of N. crawfordi. The very low overall population densities of both shrew species in most study sites

  3. [The abundance and distribution of the Ixodes persulcatus (Acari: Ixodidae) near its northern spreading limit in the Ural Mountains].

    PubMed

    Livanova, N N; Livanov, S G

    2006-01-01

    A count of the tick species Ixodes persulcatus Schulze, 1930 was carried out in the "Denezhkin Kamen" Nature Reserve and adjacent territories (the Severoural'sk and Ivdel' Districts of the Sverdlovsk Region, the Northern Urals geographical province) in the 2005. The abundance and distribution of unengorged adults has been evaluated on an area of 22.5 square kilometers (N 60 degrees 27'-60 degrees 30' E 059 degrees 38'-059 degrees 42'). The area includes proportionally main landscape and vegetation elements of the region studied, from mountain analogues of the middle and northern taiga up to tundra. One tick species, I. persulcatus, has been collected by flagging with the abundance from 0.4 up to 6.8 (average 1.6 +/- 0.9) specimens per flag-hour. The observed values of abundance are classified into three classes (I - ticks are absent, II - 1-2 specimens, and III - 3-7 specimens per flag-hour). The class I amounts 20, II - 75, and III - 5% of the area examined. It has been revealed by the expert evaluation of the 2003-2004 and counts of the 2005 that ticks occur stably in the Northern Ural, reaching N 61 degrees and 400 m above sea level. The level of the species abundance remained constant till the middle of summer. In this period the activity of ticks dependent on the weather optimum only. PMID:17042282

  4. Abundance and temporal distribution of Ornithonyssus sylviarum Canestrini and Fanzago (Acarina: Mesostigmata) in gray catbird (Dumatella carolinensis) nests.

    PubMed

    Garvin, Mary C; Scheidler, Lydia C; Cantor, Dara G; Bell, Kristen E

    2004-06-01

    The northern fowl mite, Ornithonyssus sylviarum Canestrini and Fanzago, is a common ectoparasite of wild birds. Despite its ability to transmit eastern equine encephalitis (EEE) virus under laboratory conditions and potential for involvement in the natural EEE virus cycle, we know little about its abundance or temporal distribution in nature. From June to August 2000, we studied the abundance of O. sylviarum in the nests of gray catbirds (Dumatella carolinensis), a reservoir host for EEE virus, at Killbuck Marsh Wildlife Area (KMWA), a known EEE virus focus in Wayne County, Ohio. A total of 7,883 O. sylviarum, including 1,910 adults and 5,973 protonymphs, were recovered from 23 of 26 gray catbird nests collected during various phases of the nesting cycle. We found no association between mite abundance and number of catbird nestlings in successful nests. However, mite abundance increased significantly with date of nest collection and peaked in late July when transmission of EEE virus is likely to occur at KMWA. We therefore suggest that O. sylviarum may contribute to the transmission of EEE virus among gray catbirds at KMWA. PMID:15266741

  5. Quantifying the distribution and abundance of rippled scour depressions (RSDs) on the seafloor of California's continental margin using autoclassfication models

    NASA Astrophysics Data System (ADS)

    Davis, A. C.; Mueller, C.; Hallenbeck, T.; Carrillo, J.; Gomez, J.

    2010-12-01

    The California Seafloor Mapping Project (CSMP) is a cooperative initiative creating a comprehensive, high-resolution (2-5m) coastal/marine geologic and habitat base map for all of California’s State waters (Mean high water to three nautical miles). This massive dataset covering > 8500 sq. km of coastal seafloor is enabling researchers to study patterns and distribution of near shore habitats and geomorphology on a scale never before possible. Data from CSMP reveal the presence of rippled scour depressions (RSD) as the most prominent features on the continental shelf. These features are found worldwide and are characterized as depressions (.4m-1m) of coarse grain sediment and long period sand waves surrounded by a fine sediment plateau. While previous studies have described the geomorphologies of RSDs and speculated on their origin, this is the first regional study describing their patterns of abundance and distribution on a scale of 1000s of km. The purpose of this study is to use auto classification methods to quantify the spatial extent and distribution of three benthic habitats (rock, sediment, RSD) within the state waters of California. Using CSMP acoustic backscatter imagery and derived bathymetric products (rugosity, bathymetric position index, and slope), we developed a habitat classification model in ArcGIS to assign benthic habitat into one of these three classes. These results will then be used to quantify and characterize spatial patterns in the distribution and abundance of these habitats along the California continental margin.

  6. Local and latitudinal variation in abundance: the mechanisms shaping the distribution of an ecosystem engineer

    PubMed Central

    Gonzalez, Angélica L.; Crawford, Kerri M.; Sanders, Nathan J.

    2013-01-01

    Ecological processes that determine the abundance of species within ecological communities vary across space and time. These scale-dependent processes are especially important when they affect key members of a community, such as ecosystem engineers that create shelter and food resources for other species. Yet, few studies have examined the suite of processes that shape the abundance of ecosystem engineers. Here, we evaluated the relative influence of temporal variation, local processes, and latitude on the abundance of an engineering insect—a rosette-galling midge, Rhopalomyia solidaginis (Diptera: Cecidomyiidae). Over a period of 3–5 years, we studied the density and size of galls across a suite of local experiments that manipulated genetic variation, soil nutrient availability, and the removal of other insects from the host plant, Solidago altissima (tall goldenrod). We also surveyed gall density within a single growing season across a 2,300 km latitudinal transect of goldenrod populations in the eastern United States. At the local scale, we found that host-plant genotypic variation was the best predictor of rosette gall density and size within a single year. We found that the removal of other insect herbivores resulted in an increase in gall density and size. The amendment of soil nutrients for four years had no effect on gall density, but galls were smaller in carbon-added plots compared to control and nitrogen additions. Finally, we observed that gall density varied several fold across years. At the biogeographic scale, we observed that the density of rosette gallers peaked at mid-latitudes. Using meta-analytic approaches, we found that the effect size of time, followed by host-plant genetic variation and latitude were the best predictors of gall density. Taken together, our study provides a unique comparison of multiple factors across different spatial and temporal scales that govern engineering insect herbivore density. PMID:23862102

  7. Estimating population abundance and mapping distribution of wintering sea ducks in coastal waters of the mid-Atlantic

    USGS Publications Warehouse

    Koneff, M.D.; Royle, J. Andrew; Forsell, D.J.; Wortham, J.S.; Boomer, G.S.; Perry, M.C.

    2005-01-01

    Survey design for wintering scoters (Melanitta sp.) and other sea ducks that occur in offshore waters is challenging because these species have large ranges, are subject to distributional shifts among years and within a season, and can occur in aggregations. Interest in winter sea duck population abundance surveys has grown in recent years. This interest stems from concern over the population status of some sea ducks, limitations of extant breeding waterfowl survey programs in North America and logistical challenges and costs of conducting surveys in northern breeding regions, high winter area philopatry in some species and potential conservation implications, and increasing concern over offshore development and other threats to sea duck wintering habitats. The efficiency and practicality of statistically-rigorous monitoring strategies for mobile, aggregated wintering sea duck populations have not been sufficiently investigated. This study evaluated a 2-phase adaptive stratified strip transect sampling plan to estimate wintering population size of scoters, long-tailed ducks (Clangua hyemalis), and other sea ducks and provide information on distribution. The sampling plan results in an optimal allocation of a fixed sampling effort among offshore strata in the U.S. mid-Atlantic coast region. Phase I transect selection probabilities were based on historic distribution and abundance data, while Phase 2 selection probabilities were based on observations made during Phase 1 flights. Distance sampling methods were used to estimate detection rates. Environmental variables thought to affect detection rates were recorded during the survey and post-stratification and covariate modeling were investigated to reduce the effect of heterogeneity on detection estimation. We assessed cost-precision tradeoffs under a number of fixed-cost sampling scenarios using Monte Carlo simulation. We discuss advantages and limitations of this sampling design for estimating wintering sea duck

  8. Genome-wide identification, structural analysis and new insights into late embryogenesis abundant (LEA) gene family formation pattern in Brassica napus

    PubMed Central

    Liang, Yu; Xiong, Ziyi; Zheng, Jianxiao; Xu, Dongyang; Zhu, Zeyang; Xiang, Jun; Gan, Jianping; Raboanatahiry, Nadia; Yin, Yongtai; Li, Maoteng

    2016-01-01

    Late embryogenesis abundant (LEA) proteins are a diverse and large group of polypeptides that play important roles in desiccation and freezing tolerance in plants. The LEA family has been systematically characterized in some plants but not Brassica napus. In this study, 108 BnLEA genes were identified in the B. napus genome and classified into eight families based on their conserved domains. Protein sequence alignments revealed an abundance of alanine, lysine and glutamic acid residues in BnLEA proteins. The BnLEA gene structure has few introns (<3), and they are distributed unevenly across all 19 chromosomes in B. napus, occurring as gene clusters in chromosomes A9, C2, C4 and C5. More than two-thirds of the BnLEA genes are associated with segmental duplication. Synteny analysis revealed that most LEA genes are conserved, although gene losses or gains were also identified. These results suggest that segmental duplication and whole-genome duplication played a major role in the expansion of the BnLEA gene family. Expression profiles analysis indicated that expression of most BnLEAs was increased in leaves and late stage seeds. This study presents a comprehensive overview of the LEA gene family in B. napus and provides new insights into the formation of this family. PMID:27072743

  9. Genome-wide identification, structural analysis and new insights into late embryogenesis abundant (LEA) gene family formation pattern in Brassica napus.

    PubMed

    Liang, Yu; Xiong, Ziyi; Zheng, Jianxiao; Xu, Dongyang; Zhu, Zeyang; Xiang, Jun; Gan, Jianping; Raboanatahiry, Nadia; Yin, Yongtai; Li, Maoteng

    2016-01-01

    Late embryogenesis abundant (LEA) proteins are a diverse and large group of polypeptides that play important roles in desiccation and freezing tolerance in plants. The LEA family has been systematically characterized in some plants but not Brassica napus. In this study, 108 BnLEA genes were identified in the B. napus genome and classified into eight families based on their conserved domains. Protein sequence alignments revealed an abundance of alanine, lysine and glutamic acid residues in BnLEA proteins. The BnLEA gene structure has few introns (<3), and they are distributed unevenly across all 19 chromosomes in B. napus, occurring as gene clusters in chromosomes A9, C2, C4 and C5. More than two-thirds of the BnLEA genes are associated with segmental duplication. Synteny analysis revealed that most LEA genes are conserved, although gene losses or gains were also identified. These results suggest that segmental duplication and whole-genome duplication played a major role in the expansion of the BnLEA gene family. Expression profiles analysis indicated that expression of most BnLEAs was increased in leaves and late stage seeds. This study presents a comprehensive overview of the LEA gene family in B. napus and provides new insights into the formation of this family. PMID:27072743

  10. Abundances and Distributions of Volatile Elements (Na, S, Cl, K) Within Lunar Volcanic Glass Spheres

    NASA Technical Reports Server (NTRS)

    Delano, John W.

    1999-01-01

    This research developed and applied high-precision analytical methods (electron microprobe) to determine the major- and minor-element abundances (Si, Ti, A], Cr, Fe, Mn, Mg, Ca, Na, K) in three suites of Apollo 14 volcanic green glasses. Since the precision of these data was a factor of 5-10 better than previously published results, the data provided the strongest constraints yet achieved on the geochemical processes that operated at depths less than 400 kilometers inside the Moon. The results of this work were submitted to the 29th Lunar and Planetary Science Conference, formed the basis for a Master's Thesis, and were published in the top-tier geochemical journal. Additional high-precision data on the trace abundances of sodium (Na), sulfur (S), and potassium (K) in the Apollo 17 volcanic orange glasses (74220) were also acquired during this grant-period. These data show diffusion profiles within individual 200-micron diameter, glass spherules that were apparently generated during the fire-fountain eruption of this magma in the presence of a transient vapor phase. Although these results have not yet been published, publication is planned in 2001 after additional numerical modeling has been completed. This work has also catalyzed on-going collaborative work with Professor Timothy Grove (MIT) to analyze and understand the origin of the Apollo 15 volcanic green glasses. That work will be completed for publication in 2001.

  11. Distribution and abundance of larval fish in the nearshore waters of western Lake Huron

    USGS Publications Warehouse

    O'Gorman, Robert

    1983-01-01

    Ichthyoplankton was collected at 17 nearshore (bottom depth ≥5 m but ≤10 m) sites in western Lake Huron during 1973–75 with a 0.5-m net of 351-micron mesh towed at 99 m/min. Larvae of rainbow smelt (Osmerus mordax) dominated late spring and early summer catches and larvae of alewives (Alosa pseudoharengus) the midsummer catches. Larval yellow perch (Perca flavescens) were caught in early summer but were rarely the dominant species. The time of spawning and hatching, and thus occurrence of larvae, differed between areas but was less variable for alewives than for yellow perch. The appearance of larvae in Saginaw Bay was followed successively by their appearance in southern, central, and northern Lake Huron. Rainbow smelt were most abundant in northern Lake Huron and yellow perch and alewives in inner Saginaw Bay. Densities of either rainbow smelt or alewives occasionally exceeded 1/m3, whereas those of yellow perch never exceeded 0.1/m3. Abundance of alewives was usually highest 1 to 3 m beneath the surface and that of rainbow smelt 2 to at least 6 m beneath the surface. Important nursery areas of rainbow smelt were in bays and off irregular coastlines and those of yellow perch were in bays. All nearshore waters seemed equally important as nursery areas of alewives.

  12. The distribution, abundance and seasonality of pelagic marine invertebrate larvae in the maritime Antarctic

    PubMed Central

    Stanwell-Smith, D.

    1999-01-01

    A survey of pelagic larvae was undertaken between November 1992 and February 1995 at Signy Island, Antarctica (60° 43 minutes S, 45° 36 minutes W). A diver-towed net and hand-held plankton pump were used at five sites of varying depths (6 to 30 m) and benthic substrata, in a combination of monthly and fortnightly samples. Overall larval ecological diversity was much higher than expected, with 131 morphologically distinct larval forms collected, apparently representing most of the benthic phyla present. The species richness observed is comparable with levels recorded at temperate latitudes, and higher than Arctic data and the implications for Thorson's rule (the inferred cline of reduced pelagic larval diversity towards high latitudes) is discussed. Larval abundances were low (mean 2.6 individuals per cubic metre) which were two to six orders of magnitude lower than peaks in comparable data from temperate and tropical zones. We suggest that the low abundances recorded are a reflection of both slow developmental rates and a high dilution of larvae, reducing synchrony and spreading larvae over larger distances. Three seasonal periods, during which different larval types occur, have been identified. Summer, late summer and winter spawning strategies were discernable, and in some groups larvae occurred throughout the year.

  13. Seasonal distribution and abundance of fishes and decapod crustaceans in a Cape Cod estuary

    USGS Publications Warehouse

    Able, K.W.; Fahay, M.P.; Heck, K.L.; Roman, C.T.; Lazzari, M.A.; Kaiser, S.C.

    2002-01-01

    Sampling in several habitat types (sand/mud, eelgrass, sand, gravel, macroalgae/mud) during all seasons with a variety of gears in Nauset Marsh, Massachusetts during 1985-1987 found a fauna consisting of 35 fish and 10 decapod crustacean species. Although most of the abundant species were found in several habitat types, species richness and habitat use appeared to be highest for vegetated habitats (eelgrass, macroalgae). The fishes and decapods were numerically dominated by cold-water taxa; however, numerous fish species, represented by rare individuals of predominantly southern forms, enriched the fauna. Species composition of Nauset Marsh could be distinguished from estuaries south of Cape Cod and even from the south shore of the cape. Both fishes and decapods were most abundant during the summer, apparently due to the contributions from spring and summer spawning in the estuary and the adjacent Atlantic Ocean. The location of Nauset Marsh and other estuaries on Cape Cod provide a unique opportunity to evaluate the importance of this region as a faunal boundary to estuarine species.

  14. Distribution and abundance of octocoral (Octocorallia, alcyonacea) communities at three Southern Islands of Singapore

    NASA Astrophysics Data System (ADS)

    Seah, Jason Zhi Sheng; Yap, Nicholas Wei Liang; Tan, Lik Tong; Goh, Beverly Pi Lee

    2015-06-01

    Studies concerning subtidal octocoral species from Singapore reefs are few. This study documents the diversity and abundance of octocoral communities from fringing reefs at Singapore's Southern Islands, namely, Pulau Semakau, P. Hantu and Kusu Island. Belt transects of 20 m (× 5) were employed to survey the octocoral communities at these reef sites. Morphology and sclerites of a number of collected octocoral samples were compared with paratypes obtained from the Raffles Museum of Biodiversity Research, National University of Singapore, for species identification. A total of 16 morphotypes, belonging to five octocoral genera, including Cladiella, Lobophytum, Nephthea, Sarcophyton and Sinularia, were identified in this study. Statistical analysis revealed octocoral abundance and diversity at Kusu Island reefs were higher than those around P. Hantu and P. Semakau. Conversely, octocoral community structures encountered along P. Semakau and Kusu Island were more similar than those of P. Hantu. The preliminary data presented in this study could serve as the baseline data for long term biomonitoring programs in assessing the state of coral reefs in Singapore.

  15. Inter-epidemic abundance and distribution of potential mosquito vectors for Rift Valley fever virus in Ngorongoro district, Tanzania

    PubMed Central

    Mweya, Clement N.; Kimera, Sharadhuli I.; Mellau, Lesakit S. B.; Mboera, Leonard E. G.

    2015-01-01

    Background Rift Valley fever (RVF) is a mosquito-borne viral zoonosis that primarily affects ruminants but also has the capacity to infect humans. Objective To determine the abundance and distribution of mosquito vectors in relation to their potential role in the virus transmission and maintenance in disease epidemic areas of Ngorongoro district in northern Tanzania. Methods A cross-sectional entomological investigation was carried out before the suspected RVF outbreak in October 2012. Mosquitoes were sampled both outdoors and indoors using the Centre for Disease Control (CDC) light traps and Mosquito Magnets baited with attractants. Outdoor traps were placed in proximity with breeding sites and under canopy in banana plantations close to the sleeping places of animals. Results A total of 1,823 mosquitoes were collected, of which 87% (N=1,588) were Culex pipiens complex, 12% (N=226) Aedes aegypti, and 0.5% (N=9) Anopheles species. About two-thirds (67%; N=1,095) of C. pipiens complex and nearly 100% (N=225) of A. aegypti were trapped outdoors using Mosquito Magnets. All Anopheles species were trapped indoors using CDC light traps. There were variations in abundance of C. pipiens complex and A. aegypti among different ecological and vegetation habitats. Over three quarters (78%) of C. pipiens complex and most (85%) of the A. aegypti were trapped in banana and maize farms. Both C. pipiens complex and A. aegypti were more abundant in proximity with cattle and in semi-arid thorn bushes and lower Afro-montane. The highest number of mosquitoes was recorded in villages that were most affected during the RVF epidemic of 2007. Of the tested 150 pools of C. pipiens complex and 45 pools of A. aegypti, none was infected with RVF virus. Conclusions These results provide insights into unique habitat characterisation relating to mosquito abundances and distribution in RVF epidemic-prone areas of Ngorongoro district in northern Tanzania. PMID:25613346

  16. Abundance and Relative Distribution of Frankia Host Infection Groups Under Actinorhizal Alnus glutinosa and Non-actinorhizal Betula nigra Trees.

    PubMed

    Samant, Suvidha; Huo, Tian; Dawson, Jeffrey O; Hahn, Dittmar

    2016-02-01

    Quantitative polymerase chain reaction (qPCR) was used to assess the abundance and relative distribution of host infection groups of the root-nodule forming, nitrogen-fixing actinomycete Frankia in four soils with similar physicochemical characteristics, two of which were vegetated with a host plant, Alnus glutinosa, and two with a non-host plant, Betula nigra. Analyses of DAPI-stained cells at three locations, i.e., at a distance of less than 1 m (near stem), 2.5 m (middle crown), and 3-5 m (crown edge) from the stems of both tree species revealed no statistically significant differences in abundance. Frankiae generally accounted for 0.01 to 0.04 % of these cells, with values between 4 and 36 × 10(5) cells (g soil)(-1). In three out of four soils, abundance of frankiae was significantly higher at locations "near stem" and/or "middle crown" compared to "crown edge," while numbers at these locations were not different in the fourth soil. Frankiae of the Alnus host infection group were dominant in all samples accounting for about 75 % and more of the cells, with no obvious differences with distance to stem. In three of the soils, all of these cells were represented by strain Ag45/Mut15. In the fourth soil that was vegetated with older A. glutinosa trees, about half of these cells belonged to a different subgroup represented by strain ArI3. In all soils, the remaining cells belonged to the Elaeagnus host infection group represented by strain EAN1pec. Casuarina-infective frankiae were not found. Abundance and relative distribution of Frankia host infection groups were similar in soils under the host plant A. glutinosa and the non-host plant B. nigra. Results did thus not reveal any specific effects of plant species on soil Frankia populations. PMID:26143359

  17. Impact of secondary hard substrate on the distribution and abundance of Aurelia aurita in the western Baltic Sea.

    PubMed

    Janßen, H; Augustin, C B; Hinrichsen, H H; Kube, S

    2013-10-15

    This study assessed the impact of secondary hard substrate, as being introduced into marine ecosystems by the establishment of wind farm pillars, on the occurrence and distribution of the moon jelly Aurelia aurita in the southwestern Baltic Sea. A two-year data sampling was conducted with removable settlement plates to assess the distribution and population development of the scyphozoan polyps. The data collected from these samples were used to set up a model with Lagrangian particle technique. The results confirm that anthropogenic created hard substrate (e.g. offshore wind farms) has the potential to increase the abundance of the A. aurita population. The distribution of wind farm borne jellyfish along Danish, German and Polish coasts indicates conflicts with further sectors, mainly energy and tourism. PMID:23987093

  18. ASSESSING ABUNDANCE DISTRIBUTIONS IN NATURAL COMMUNITIES OF ECTOMYCORRHIZAS ALONG AN ENVIRONMENTAL GRADIENT

    EPA Science Inventory

    Alpha diversity indices often fail to distinguish between natural populations that a more detailed investigation of the distribution of ramets among types would show are quite different. We studied the effectiveness of applying SHE analyses to morphotype classifications of ectom...

  19. Phylogeography of Ramalina menziesii, a widely distributed lichen-forming fungus in western North America.

    PubMed

    Sork, Victoria L; Werth, Silke

    2014-05-01

    The complex topography and climate history of western North America offer a setting where lineage formation, accumulation and migration have led to elevated inter- and intraspecific biodiversity in many taxa. Here, we study Ramalina menziesii, an epiphytic lichenized fungus with a range encompassing major ecosystems from Baja California to Alaska to explore the predictions of two hypotheses: (i) that the widespread distribution of R. menziesii is due to a single migration episode from a single lineage and (ii) that the widespread distribution is due to the formation and persistence of multiple lineages structured throughout the species' range. To obtain evidence for these predictions, we first construct a phylogenetic tree and identify multiple lineages structured throughout the species' range--some ancient ones that are localized and other more recent lineages that are widely distributed. Second, we use an isolation with migration model to show that sets of ecoregion populations diverged from each other at different times, demonstrating the importance of historical and current barriers to gene flow. Third, we estimated migration rates among ecoregions and find that Baja California populations are relatively isolated, that inland California ecoregion populations do not send out emigrants and that migration out of California coastal and Pacific Northwest populations into inland California ecoregions is high. Such intraspecific geographical patterns of population persistence and dispersal both contribute to the wide range of this genetically diverse lichen fungus and provide insight into the evolutionary processes that enhance species diversity of the California Floristic Province. PMID:24673777

  20. A Disaster-Tolerant Widely Distributed File System Using Optical Disk Libraries

    NASA Astrophysics Data System (ADS)

    Ueno, Masahiro; Murata, Setsuko; Iwatsu, Shigetaro; Tanabe, Takaya

    1999-03-01

    We have developed a disaster-tolerant widely distributed data-backup file system that uses optical disk libraries and either simple or advanced small computer system interface (SCSI) extension equipment. The latter includes a redundant arrays of inexpensive disks (RAID) function. To evaluate the basic performance of the developed system, we first used the simple SCSI extension equipment to investigate the effect of the SCSI command-queuing function used in the local SCSI target module and found that it increases the processing speed. We then examined the effect of delay due to the wide distribution and found that read/write throughput was not affected up to distances of 10 km. Next we compared the performance of the backup system using both types of SCSI extension equipment with that without extension equipment. We found that the write speed is about the same for both, but the read speed is slower with the SCSI extension when the data size exceeds 100 kB. Using the advanced equipment to distribute the data to multiple disks solved the problem of non matching read speeds to a certain extent. A backup system using the advanced equipment was applied to a database system by using a database benchmark test program.

  1. Samsum ant, Brachyponera sennaarensis (Formicidae: Ponerinae): Distribution and abundance in Saudi Arabia

    PubMed Central

    Al-Khalifa, Mohammed Saleh; Mashaly, Ashraf Mohamed Ali; Siddiqui, Mohammed Iqbal; Al-Mekhlafi, Fahd Abdu

    2015-01-01

    Invasive species are capable of causing considerable damage to natural ecosystems, agriculture and economies throughout the World. Samsum ant, Brachyponera (Pachycondyla) sennaarensis has been a reason for medical implication and social nuisance through its poisonous and severely painful sting causing anaphylactic shock in many cases. We surveyed for the presence of the samsum ant in various provinces of Saudi Arabia. B. sennaarensis was the abundant Ponerinae species in human settlements. In the Eastern provinces, however, few samples were collected, and none were found in the Northern and Western provinces. Infestations of B. sennaarensis were particularly severe in the spring and summer seasons, when the ants make nests in moist areas and in cracks in cemented structures, whereas the extent of infestation reduced in winter seasons. PMID:26288561

  2. El Chichon volcanic ash in the stratosphere - Particle abundances and size distributions after the 1982 eruption

    NASA Technical Reports Server (NTRS)

    Gooding, J. L.; Clanton, U. S.; Gabel, E. M.; Warren, J. L.

    1983-01-01

    Volcanic ash particles collected from the stratosphere after the March/April, 1982 explosive eruption of El Chichon volcano, Mexico, were mostly 2-40 micron vesicular shards of silicic volcanic glass that varied in abundance, at 16.8-19.2 km altitude, from 200 per cu m (30-49 deg N lat.) in May to 1.3 per cu m (45-75 deg N) in October. At the minimum, the ash cloud covered latitudes 10-60 deg N in July and 10 deg S-75 deg N in October. In May and July, ash particles were mostly free, individual shards (and clusters of shards) but, by October, were intimately associated with liquid droplets (presumably, sulfuric acid). In May 1982, the total stratospheric burden of ash was at least 240 tons (2.2 x 10 to the 8th g) although the total ash injected into the stratosphere by the eruption was probably 480-8400 tons.

  3. Hydroacoustic measures of Mysis relicta abundance and distribution in Lake Ontario

    USGS Publications Warehouse

    Rudstam, L. G.; Schaner, T.; Gal, G.; Boscarino, B.T.; O'Gorman, R.; Warner, D.M.; Johannsson, O.E.; Bowen, K.L.

    2008-01-01

    Mysis relicta can be observed on echograms as a sound scattering layer when they migrate into the water column at night to feed on zooplankton. However, quantitative measures of mysid abundance with hydroacoustics requires knowledge of mysid target strength (TS), a method of removing fish echoes and contribution from noise, and an understanding of the effect of range on the ability of hydroacoustics to detect mysids (the detection limit). Comparisons of paired net data and acoustics data from July 7, 2005 yielded a mysid TS of -86.3 dB (9 mm animal) and a biomass TS of -58.4 dB (g dry wt)-1. With ambient noise levels (Sv of -125 dB at 1 m depth) and this TS, we can detect a mysid density of 1 m-3 at 60 m depth with a signal to noise ratio of 3 dB. We present a method to remove backscattering from both noise and fish and apply this method and the new TS data to whole lake acoustic data from Lake Ontario collected in July 25-31, 2005 with a 120 kHz echosounder as part of the annual standard fish survey in that lake. Mysis abundance was strongly depth dependent, with highest densities in areas with bottom depth > 100 m, and few mysids in areas with bottom depth 100 m, 100-75 m, 75-50 m, 50-30 m, < 30 m), the whole-lake average mysid density was 118 m-2 (CV 21%) and the whole-lake average mysid biomass was 0.19 g dry wt m-2 (CV 22%) in July 2005. The CVs of these densities also account for uncertainty in the TS estimates. This is comparable to whole-lake density estimates using vertical net tows in November, 2005 (93 m-2, CV 16%). Copyright ?? 2008 AEHMS.

  4. A MASS-DEPENDENT YIELD ORIGIN OF NEUTRON-CAPTURE ELEMENT ABUNDANCE DISTRIBUTIONS IN ULTRA-FAINT DWARFS

    SciTech Connect

    Lee, Duane M.; Johnston, Kathryn V.; Tumlinson, Jason; Sen, Bodhisattva; Simon, Joshua D.

    2013-09-10

    One way to constrain the nature of the high-redshift progenitors of the Milky Way (MW) is to look at the low-metallicity stellar populations of the different Galactic components today. For example, high-resolution spectroscopy of very metal poor (VMP) stars demonstrates remarkable agreement between the distribution of [Ti/Fe] in the stellar populations of the MW halo and ultra-faint dwarf (UFD) galaxies. In contrast, for the neutron-capture (nc) abundance ratio distributions [(Sr, Ba)/Fe], the peak of the small UFD sample (6 stars) exhibits a significant under-abundance relative to the VMP stars in the larger MW halo sample ({approx}300 stars). We present a simple scenario that can simultaneously explain these similarities and differences by assuming: (1) that the MW VMP stars were predominately enriched by a prior generation of stars which possessed a higher total mass than the prior generation of stars that enriched the UFD VMP stars; and (2) a much stronger mass-dependent yield (MDY) for nc-elements than for the (known) MDY for Ti. Simple statistical tests demonstrate that conditions (1) and (2) are consistent with the observed abundance distributions, albeit without strong constraints on model parameters. A comparison of the broad constraints for these nc-MDY with those derived in the literature seems to rule out Ba production from low-mass supernovae (SNe) and affirms models that primarily generate yields from high-mass SNe. Our scenario can be confirmed by a relatively modest (factor of {approx}3-4) increase in the number of high-resolution spectra of VMP stars in UFDs.

  5. Distributed fiber sensing system with wide frequency response and accurate location

    NASA Astrophysics Data System (ADS)

    Shi, Yi; Feng, Hao; Zeng, Zhoumo

    2016-02-01

    A distributed fiber sensing system merging Mach-Zehnder interferometer and phase-sensitive optical time domain reflectometer (Φ-OTDR) is demonstrated for vibration measurement, which requires wide frequency response and accurate location. Two narrow line-width lasers with delicately different wavelengths are used to constitute the interferometer and reflectometer respectively. A narrow band Fiber Bragg Grating is responsible for separating the two wavelengths. In addition, heterodyne detection is applied to maintain the signal to noise rate of the locating signal. Experiment results show that the novel system has a wide frequency from 1 Hz to 50 MHz, limited by the sample frequency of data acquisition card, and a spatial resolution of 20 m, according to 200 ns pulse width, along 2.5 km fiber link.

  6. The Distribution and Abundance of Bird Species: Towards a Satellite, Data Driven Avian Energetics and Species Richness Model

    NASA Technical Reports Server (NTRS)

    Smith, James A.

    2003-01-01

    This paper addresses the fundamental question of why birds occur where and when they do, i.e., what are the causative factors that determine the spatio-temporal distributions, abundance, or richness of bird species? In this paper we outline the first steps toward building a satellite, data-driven model of avian energetics and species richness based on individual bird physiology, morphology, and interaction with the spatio-temporal habitat. To evaluate our model, we will use the North American Breeding Bird Survey and Christmas Bird Count data for species richness, wintering and breeding range. Long term and current satellite data series include AVHRR, Landsat, and MODIS.

  7. The wide distribution of endornaviruses, large double-stranded RNA replicons with plasmid-like properties.

    PubMed

    Fukuhara, T; Koga, R; Aoki, N; Yuki, C; Yamamoto, N; Oyama, N; Udagawa, T; Horiuchi, H; Miyazaki, S; Higashi, Y; Takeshita, M; Ikeda, K; Arakawa, M; Matsumoto, N; Moriyama, H

    2006-05-01

    The International Committee on Taxonomy of Viruses (ICTV) recently accepted Endornavirus as a new genus of plant dsRNA virus. We have determined the partial nucleotide sequences of the RNA-dependent RNA polymerase regions from the large dsRNAs (about 14 kbp) isolated from barley (Hordeum vulgare), kidney bean (Phaseolus vulgaris), melon (Cucumis melo), bottle gourd (Lagenaria siceraria), Malabar spinach (Basella alba), seagrass (Zostera marina), and the fungus Helicobasidium mompa. Phylogenetic analyses of these seven dsRNAs indicate that these dsRNAs are new members of the genus Endornavirus that are widely distributed over the plant and fungal kingdoms. PMID:16341944

  8. Air toxics in coal: Distribution and abundance of selected trace elements in the Powder River Basin

    SciTech Connect

    Crowley, S.S.; Stanton, R.W.

    1994-12-31

    The 1990 Clean Air Act Amendments identified 12 potentially toxic elements, called ``air toxics,`` that may be released during the combustion of coal. The elements identified in the amendments are As, Be, Cd, Cr, Co, Hg, Mn, Ni, Pb, Sb, Se, and U (radionuclides). In this study, the distribution and concentration of these elements were examined, on a whole-coal basis, in samples from two cores of the Wyodak-Anderson coal bed (Paleocene, Tongue River Member of the Fort Union Formation), in the Powder River Basin of Wyoming. The distribution of these elements in the Wyodak-Anderson coal bed is also compared to the distribution of the same elements in a correlative coal bed, the Anderson-Dietz 1 coal bed in the Powder River Basin of Montana.

  9. Distribution, Abundance, and Diversity Patterns of the Thermoacidophilic “Deep-Sea Hydrothermal Vent Euryarchaeota 2”

    PubMed Central

    Flores, Gilberto E.; Wagner, Isaac D.; Liu, Yitai; Reysenbach, Anna-Louise

    2011-01-01

    Cultivation-independent studies have shown that taxa belonging to the “deep-sea hydrothermal vent euryarchaeota 2” (DHVE2) lineage are widespread at deep-sea hydrothermal vents. While this lineage appears to be a common and important member of the microbial community at vent environments, relatively little is known about their overall distribution and phylogenetic diversity. In this study, we examined the distribution, relative abundance, co-occurrence patterns, and phylogenetic diversity of cultivable thermoacidophilic DHVE2 in deposits from globally distributed vent fields. Results of quantitative polymerase chain reaction assays with primers specific for the DHVE2 and Archaea demonstrate the ubiquity of the DHVE2 at deep-sea vents and suggest that they are significant members of the archaeal communities of established vent deposit communities. Local similarity analysis of pyrosequencing data revealed that the distribution of the DHVE2 was positively correlated with 10 other Euryarchaeota phylotypes and negatively correlated with mostly Crenarchaeota phylotypes. Targeted cultivation efforts resulted in the isolation of 12 axenic strains from six different vent fields, expanding the cultivable diversity of this lineage to vents along the East Pacific Rise and Mid-Atlantic Ridge. Eleven of these isolates shared greater than 97% 16S rRNA gene sequence similarity with one another and the only described isolate of the DHVE2, Aciduliprofundum boonei T469T. Sequencing and phylogenetic analysis of five protein-coding loci, atpA, EF-2, radA, rpoB, and secY, revealed clustering of isolates according to geographic region of isolation. Overall, this study increases our understanding of the distribution, abundance, and phylogenetic diversity of the DHVE2. PMID:22363325

  10. Distribution and abundance of sea urchins in Singapore reefs and their potential ecological impacts on macroalgae and coral communities

    NASA Astrophysics Data System (ADS)

    Goh, Beverly P. L.; Lim, Dawn Y. F.

    2015-06-01

    The sea urchin Diadema setosum is often encountered in the coral reefs in the Southern Islands of Singapore. While sea urchins have been known to play a role in regulating algal communities and influencing coral recruitment in other parts of the world, their role in Singapore reefs has not been determined. This study was conducted to determine the distribution and abundance of sea urchins in Singapore reefs, to examine algal cover, algal biomass, algal species and live coral cover, and to determine any interactions between urchin density and algal communities that may impact coral cover. Several reefs in Singapore were surveyed using belt transects measuring 20 m by 2 m, laid down on the reef crest. Abundance of urchins, algal species, biomass, and live coral cover were determined by the use of quadrats within each belt transect. This study revealed an increasing abundance of the sea urchin Diadema setosum in reefs progressing southwards away from mainland Singapore with low density of urchins occurring in Sisters' Island, St John's Island, Pulau Tekukor, and Kusu Island, and the highest density observed at Raffles Lighthouse. A significant negative linear relationship between algal cover and live coral cover (P < 0.05) was established. The results of this study indicate that sea urchins may not be an important component of the herbivore guild in Singapore.

  11. An Empirical Bayes Mixture Model for Effect Size Distributions in Genome-Wide Association Studies.

    PubMed

    Thompson, Wesley K; Wang, Yunpeng; Schork, Andrew J; Witoelar, Aree; Zuber, Verena; Xu, Shujing; Werge, Thomas; Holland, Dominic; Andreassen, Ole A; Dale, Anders M

    2015-12-01

    Characterizing the distribution of effects from genome-wide genotyping data is crucial for understanding important aspects of the genetic architecture of complex traits, such as number or proportion of non-null loci, average proportion of phenotypic variance explained per non-null effect, power for discovery, and polygenic risk prediction. To this end, previous work has used effect-size models based on various distributions, including the normal and normal mixture distributions, among others. In this paper we propose a scale mixture of two normals model for effect size distributions of genome-wide association study (GWAS) test statistics. Test statistics corresponding to null associations are modeled as random draws from a normal distribution with zero mean; test statistics corresponding to non-null associations are also modeled as normal with zero mean, but with larger variance. The model is fit via minimizing discrepancies between the parametric mixture model and resampling-based nonparametric estimates of replication effect sizes and variances. We describe in detail the implications of this model for estimation of the non-null proportion, the probability of replication in de novo samples, the local false discovery rate, and power for discovery of a specified proportion of phenotypic variance explained from additive effects of loci surpassing a given significance threshold. We also examine the crucial issue of the impact of linkage disequilibrium (LD) on effect sizes and parameter estimates, both analytically and in simulations. We apply this approach to meta-analysis test statistics from two large GWAS, one for Crohn's disease (CD) and the other for schizophrenia (SZ). A scale mixture of two normals distribution provides an excellent fit to the SZ nonparametric replication effect size estimates. While capturing the general behavior of the data, this mixture model underestimates the tails of the CD effect size distribution. We discuss the implications of

  12. A range-wide genetic bottleneck overwhelms contemporary landscape factors and local abundance in shaping genetic patterns of an alpine butterfly (Lepidoptera: Pieridae: Colias behrii).

    PubMed

    Schoville, Sean D; Lam, Athena W; Roderick, George K

    2012-09-01

    Spatial and environmental heterogeneity are major factors in structuring species distributions in alpine landscapes. These landscapes have also been affected by glacial advances and retreats, causing alpine taxa to undergo range shifts and demographic changes. These nonequilibrium population dynamics have the potential to obscure the effects of environmental factors on the distribution of genetic variation. Here, we investigate how demographic change and environmental factors influence genetic variation in the alpine butterfly Colias behrii. Data from 14 microsatellite loci provide evidence of bottlenecks in all population samples. We test several alternative models of demography using approximate Bayesian computation (ABC), with the results favouring a model in which a recent bottleneck precedes rapid population growth. Applying independent calibrations to microsatellite loci and a nuclear gene, we estimate that this bottleneck affected both northern and southern populations 531-281 years ago, coinciding with a period of global cooling. Using regression approaches, we attempt to separate the effects of population structure, geographical distance and landscape on patterns of population genetic differentiation. Only 40% of the variation in F(ST) is explained by these models, with geographical distance and least-cost distance among meadow patches selected as the best predictors. Various measures of genetic diversity within populations are also decoupled from estimates of local abundance and habitat patch characteristics. Our results demonstrate that demographic change can have a disproportionate influence on genetic diversity in alpine species, contrasting with other studies that suggest landscape features control contemporary demographic processes in high-elevation environments. PMID:22849440

  13. Aspects of Benthic Decapod Diversity and Distribution from Rocky Nearshore Habitat at Geographically Widely Dispersed Sites

    PubMed Central

    Pohle, Gerhard; Iken, Katrin; Clarke, K. Robert; Trott, Thomas; Konar, Brenda; Cruz-Motta, Juan José; Wong, Melisa; Benedetti-Cecchi, Lisandro; Mead, Angela; Miloslavich, Patricia; Mieszkowska, Nova; Milne, Rebecca; Tamburello, Laura; Knowlton, Ann; Kimani, Edward; Shirayama, Yoshihisa

    2011-01-01

    Relationships of diversity, distribution and abundance of benthic decapods in intertidal and shallow subtidal waters to 10 m depth are explored based on data obtained using a standardized protocol of globally-distributed samples. Results indicate that decapod species richness overall is low within the nearshore, typically ranging from one to six taxa per site (mean = 4.5). Regionally the Gulf of Alaska decapod crustacean community structure was distinguishable by depth, multivariate analysis indicating increasing change with depth, where assemblages of the high and mid tide, low tide and 1 m, and 5 and 10 m strata formed three distinct groups. Univariate analysis showed species richness increasing from the high intertidal zone to 1 m subtidally, with distinct depth preferences among the 23 species. A similar depth trend but with peak richness at 5 m was observed when all global data were combined. Analysis of latitudinal trends, confined by data limitations, was equivocal on a global scale. While significant latitudinal differences existed in community structure among ecoregions, a semi-linear trend in changing community structure from the Arctic to lower latitudes did not hold when including tropical results. Among boreal regions the Canadian Atlantic was relatively species poor compared to the Gulf of Alaska, whereas the Caribbean and Sea of Japan appeared to be species hot spots. While species poor, samples from the Canadian Atlantic were the most diverse at the higher infraordinal level. Linking 11 environmental variables available for all sites to the best fit family-based biotic pattern showed a significant relationship, with the single best explanatory variable being the level of organic pollution and the best combination overall being organic pollution and primary productivity. While data limitations restrict conclusions in a global context, results are seen as a first-cut contribution useful in generating discussion and more in-depth work in the still

  14. Aspects of benthic decapod diversity and distribution from rocky nearshore habitat at geographically widely dispersed sites.

    PubMed

    Pohle, Gerhard; Iken, Katrin; Clarke, K Robert; Trott, Thomas; Konar, Brenda; Cruz-Motta, Juan José; Wong, Melisa; Benedetti-Cecchi, Lisandro; Mead, Angela; Miloslavich, Patricia; Mieszkowska, Nova; Milne, Rebecca; Tamburello, Laura; Knowlton, Ann; Kimani, Edward; Shirayama, Yoshihisa

    2011-01-01

    Relationships of diversity, distribution and abundance of benthic decapods in intertidal and shallow subtidal waters to 10 m depth are explored based on data obtained using a standardized protocol of globally-distributed samples. Results indicate that decapod species richness overall is low within the nearshore, typically ranging from one to six taxa per site (mean = 4.5). Regionally the Gulf of Alaska decapod crustacean community structure was distinguishable by depth, multivariate analysis indicating increasing change with depth, where assemblages of the high and mid tide, low tide and 1 m, and 5 and 10 m strata formed three distinct groups. Univariate analysis showed species richness increasing from the high intertidal zone to 1 m subtidally, with distinct depth preferences among the 23 species. A similar depth trend but with peak richness at 5 m was observed when all global data were combined. Analysis of latitudinal trends, confined by data limitations, was equivocal on a global scale. While significant latitudinal differences existed in community structure among ecoregions, a semi-linear trend in changing community structure from the Arctic to lower latitudes did not hold when including tropical results. Among boreal regions the Canadian Atlantic was relatively species poor compared to the Gulf of Alaska, whereas the Caribbean and Sea of Japan appeared to be species hot spots. While species poor, samples from the Canadian Atlantic were the most diverse at the higher infraordinal level. Linking 11 environmental variables available for all sites to the best fit family-based biotic pattern showed a significant relationship, with the single best explanatory variable being the level of organic pollution and the best combination overall being organic pollution and primary productivity. While data limitations restrict conclusions in a global context, results are seen as a first-cut contribution useful in generating discussion and more in-depth work in the still

  15. The role of CAX1 and CAX3 in elemental distribution and abundance in Arabidopsis seed

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The ability to alter nutrient partitioning within plant cells is poorly understood. In Arabidopsis (Arabidopsis thaliana), a family of endomembrane cation exchangers (CAXs) transports Ca(2+) and other cations. However, experiments have not focused on how the distribution and partitioning of calcium ...

  16. Abundance and Distribution of Walleye, Northern Squawfish, and Smallmouth Bass in John Day Reservoir, 1984-1985 Progress Report.

    SciTech Connect

    Beamesderfer, Raymond C.

    1985-12-01

    Sampling was conducted in John Day Reservoir to collect walleye, northern squawfish and smallmouth bass. Changes in distributions during sampling were characterized from changes in catch per unit effort (CPUE) in sampling areas. Observed movements of marked and radiotagged fish were examined and used to define discrete populations. Abundances were estimated using a modified Schnabel multiple mark and recapture estimator. Abundance estimates were corrected for angler harvest, size specific vulnerability to gear, recruitment due to growth and tag loss during sampling. Age composition of catch was determined to characterize relative contributions of various year classes to the populations. Ages at which fish were fully recruited to gear were defined by catch curves. Survival of fully recruited year classes was calculated from differences in CPUE's between 1984 and 1985. Mean length at age was estimated and used to determine age specific incremental growth. Eighty-eight percent of walleye were caught in McNary tailrace or Irrigon-Paterson, whereas 95% of smallmouth bass were caught from Irrigon-Paterson to the John Day forebay. Abundances of walleye and northern squawfish with fork lengths greater than 250 mm and smallmouth bass with fork lengths greater than 200 mm were estimated to be 16,219, 95,407, and 11,259. Anglers harvested an estimated 235 walleye, 2004 northern squawfish and 4383 smallmouth bass during the sampling season. Six-year-old walleye, 4-year-old northern squawfish and 3-year-old smallmouth bass were most abundant in catches. Walleye and smallmouth bass were fully recruited to sampling gear by age 3. Age at which northern squawfish were fully recruited was uncertain. Mean survival was 46.1% for walleye and 46.5% for northern squawfish. Mean smallmouth bass survival was 46.5% in the lower and 43.7% in the upper reservoir.

  17. Distribution and abundance of stream fishes in relation to barriers: implications for monitoring stream recovery after barrier removal

    USGS Publications Warehouse

    Zydlewski, Joseph; Coghlan Jr., Stephen M.; Gardner, C.; Saunders, R.

    2011-01-01

    Dams are ubiquitous in coastal regions and have altered stream habitats and the distribution and abundance of stream fishes in those habitats by disrupting hydrology, temperature regime and habitat connectivity. Dam removal is a common restoration tool, but often the response of the fish assemblage is not monitored rigorously. Sedgeunkedunk Stream, a small tributary to the Penobscot River (Maine, USA), has been the focus of a restoration effort that includes the removal of two low-head dams. In this study, we quantified fish assemblage metrics along a longitudinal gradient in Sedgeunkedunk Stream and also in a nearby reference stream. By establishing pre-removal baseline conditions and associated variability and the conditions and variability immediately following removal, we can characterize future changes in the system associated with dam removal. Over 2 years prior to dam removal, species richness and abundance in Sedgeunkedunk Stream were highest downstream of the lowest dam, lowest immediately upstream of that dam and intermediate farther upstream; patterns were similar in the reference stream. Although seasonal and annual variation in metrics within each site was substantial, the overall upstream-to-downstream pattern along the stream gradient was remarkably consistent prior to dam removal. Immediately after dam removal, we saw significant decreases in richness and abundance downstream of the former dam site and a corresponding increase in fish abundance upstream of the former dam site. No such changes occurred in reference sites. Our results show that by quantifying baseline conditions in a small stream before restoration, the effects of stream restoration efforts on fish assemblages can be monitored successfully. These data set the stage for the long-term assessment of Sedgeunkedunk Stream and provide a simple methodology for assessment in other restoration projects.

  18. Distribution, abundance, and predation effects of epipelagic ctenophores and jellyfish in the western Arctic Ocean

    NASA Astrophysics Data System (ADS)

    Purcell, Jennifer E.; Hopcroft, Russell R.; Kosobokova, Ksenia N.; Whitledge, Terry E.

    2010-01-01

    The Arctic Ocean is undergoing changes at an unprecedented rate because of global climate change. Especially poorly-studied in arctic waters are the gelatinous zooplankton, which are difficult to study using traditional oceanographic methods. A distinct zooplanktivore community was characterized in the surface 100 m by use of a Remotely Operated Vehicle, net collections, and SCUBA diving. The large scyphomedusa, Chrysaora melanaster, was associated with the warm Pacific water at ˜35-75 m depth. A diverse ctenophore community lived mainly above the C. melanaster layer, including Dryodora glandula, a specialized predator of larvaceans, Beroe cucumis, a predator of other ctenophores, and the extremely fragile Bolinopsis infundibulum, which was the most abundant species. Gut content analyses showed that Mertensia ovum selectively consumed the largest copepods ( Calanus spp.) and amphipods ( Parathemisto libellula); B. infundibulum consumed smaller copepods and pteropods ( Limacina helicina). Large copepods were digested by M. ovum in ˜12 h at -1.5 to 0 °C, but by B. infundibulum in only ˜4 h. We estimated that M. ovum consumed an average of ˜2% d -1 of the Calanus spp. copepods and that B. infundibulum consumed ˜4% d -1 of copepods <3 mm prosome length. These are significant consumption rates given that Calanus spp. have life-cycles of 2 or more years and are eaten by vertebrates including bowhead whales and arctic cod.

  19. A regional density distribution based wide dynamic range algorithm for infrared camera systems

    NASA Astrophysics Data System (ADS)

    Park, Gyuhee; Kim, Yongsung; Joung, Shichang; Shin, Sanghoon

    2014-10-01

    Forward Looking InfraRed (FLIR) imaging system has been widely used for both military and civilian purposes. Military applications include target acquisition and tracking, night vision system. Civilian applications include thermal efficiency analysis, short-ranged wireless communication, weather forecasting and other various applications. The dynamic range of FLIR imaging system is larger than one of commercial display. Generally, auto gain controlling and contrast enhancement algorithm are applied to FLIR imaging system. In IR imaging system, histogram equalization and plateau equalization is generally used for contrast enhancement. However, they have no solution about the excessive enhancing when luminance histogram has been distributed in specific narrow region. In this paper, we proposed a Regional Density Distribution based Wide Dynamic Range algorithm for Infrared Camera Systems. Depending on the way of implementation, the result of WDR is quite different. Our approach is single frame type WDR algorithm for enhancing the contrast of both dark and white detail without loss of bins of histogram with real-time processing. The significant change in luminance caused by conventional contrast enhancement methods may introduce luminance saturation and failure in object tracking. Proposed method guarantees both the effective enhancing in contrast and successive object tracking. Moreover, since proposed method does not using multiple images on WDR, computation complexity might be significantly reduced in software / hardware implementation. The experimental results show that proposed method has better performance compared with conventional Contrast enhancement methods.

  20. Heterogeneous distribution of H2O in the Martian interior: Implications for the abundance of H2O in depleted and enriched mantle sources

    NASA Astrophysics Data System (ADS)

    McCubbin, Francis M.; Boyce, Jeremy W.; Srinivasan, Poorna; Santos, Alison R.; Elardo, Stephen M.; Filiberto, Justin; Steele, Andrew; Shearer, Charles K.

    2016-04-01

    We conducted a petrologic study of apatite within 12 Martian meteorites, including 11 shergottites and one basaltic regolith breccia. These data were combined with previously published data to gain a better understanding of the abundance and distribution of volatiles in the Martian interior. Apatites in individual Martian meteorites span a wide range of compositions, indicating they did not form by equilibrium crystallization. In fact, the intrasample variation in apatite is best described by either fractional crystallization or crustal contamination with a Cl-rich crustal component. We determined that most Martian meteorites investigated here have been affected by crustal contamination and hence cannot be used to estimate volatile abundances of the Martian mantle. Using the subset of samples that did not exhibit crustal contamination, we determined that the enriched shergottite source has 36-73 ppm H2O and the depleted source has 14-23 ppm H2O. This result is consistent with other observed geochemical differences between enriched and depleted shergottites and supports the idea that there are at least two geochemically distinct reservoirs in the Martian mantle. We also estimated the H2O, Cl, and F content of the Martian crust using known crust-mantle distributions for incompatible lithophile elements. We determined that the bulk Martian crust has ~1410 ppm H2O, 450 ppm Cl, and 106 ppm F, and Cl and H2O are preferentially distributed toward the Martian surface. The estimate of crustal H2O results in a global equivalent surface layer (GEL) of ~229 m, which can account for at least some of the surface features on Mars attributed to flowing water and may be sufficient to support the past presence of a shallow sea on Mars' surface.

  1. Distribution of Petrosavia sakuraii (Petrosaviaceae), a rare mycoheterotrophic plant, may be determined by the abundance of its mycobionts.

    PubMed

    Yamato, Masahide; Takahashi, Hiroshi; Shimono, Ayako; Kusakabe, Ryota; Yukawa, Tomohisa

    2016-07-01

    Petrosavia sakuraii (Petrosaviaceae) is a rare, mycoheterotrophic plant species that has a specific symbiotic interaction with a narrow clade of arbuscular mycorrhizal (AM) fungi. In the present study, we tested the hypothesis that the distribution and abundance of mycobionts in two P. sakuraii habitats, Nagiso and Sengenyama (central Honshu, Japan), determine the distribution pattern of this rare plant. Nagiso is a thriving habitat with hundreds of P. sakuraii individuals per 100 m(2), whereas Sengenyama is a sparsely populated habitat with fewer than 10 individuals per 100 m(2). AM fungal communities associated with tree roots were compared at 20-cm distances from P. sakuraii shoots between the two habitats by molecular identification of AM fungal partial sequences of the small subunit ribosomal RNA gene. The percentage of AM fungal sequences showing over 99 % identity with those of the dominant P. sakuraii mycobionts was high (54.9 %) in Nagiso, but low (13.2 %) in Sengenyama. Accordingly, the abundance of P. sakuraii seems to reflect the proportion of potential mycobionts. It is likely that P. sakuraii mycobionts are not rare in Japanese warm temperate forests since 11.2 % of AM fungal sequences previously obtained from a deciduous broad-leaved forest devoid of P. sakuraii in Mizuho, central Honshu, Japan, were >99 % identical to those of the dominant P. sakuraii mycobionts. Thus, results suggest that the abundant mycobionts may be required for sufficient propagation of P. sakuraii, and this quantitative trait of AM fungal communities required for P. sakuraii may explain the rarity of this plant. PMID:26846147

  2. Carbon, nitrogen and sulfur in lunar fines 15012 and 15013 - Abundances, distributions and isotopic compositions

    NASA Technical Reports Server (NTRS)

    Chang, S.; Lawless, J.; Romiez, M.; Kaplan, I. R.; Petrowski, C.; Sakai, H.; Smith, J. W.

    1974-01-01

    Lunar fines 15012,16 and 15013,3 were analyzed by stepwise pyrolysis and acid hydrolysis as well as complete combustion in oxygen to determine carbon, nitrogen and sulfur. In addition, hydrogen was analysed during pyrolysis as well as during hydrolysis. By comparison of the distribution frequencies of C, N, S, H2 and Fe with He-4, considered to have arisen from solar wind contribution, it is concluded that nitrogen and hydrogen have largely a solar origin. Carbon has a significant solar contribution, and metallic iron may have resulted from solar wind interaction with ferrous minerals on the lunar surface. Sulfur probably has a predominantly lunar origin. There is no direct evidence for meteorotic contribution to these samples. Solar wind interaction also has a marked effect on the stable isotope distribution of C-13/C-12, N-15/N-14, and S-34/S-32. In all cases, the heavy isotope was most enriched in the smallest grain-size fraction.

  3. Distribution and abundance of sigmodontine rodents in relation to hantavirus in Neuquén, Argentina.

    PubMed

    Piudo, Luciana; Monteverde, Martín; González Capria, Silvana; Padula, Paula; Carmanchahi, Pablo

    2005-06-01

    In order to estimate spatial distribution, temporal variation, and prevalence of Andes hantavirus antibody in the rodent community, and especially in Oligoryzomys longicaudatus populations, four different ecosystems were trapped seasonally between spring 2001 and winter 2002 in Neuquen, northwestern Argentinean Patagonia. Five peridomestic settings were sampled within the same period. The rodent O. longicaudatus had the widest distribution in Neuquen, as it was the only species captured at every sample site except for the High Andean steppe, and it was also the most common species captured. Rodents of 13 species were tested for hantavirus antibody prevalence, but O. longicaudatus and Abrothrix longipilis were the only seropositive species. Seropositive individuals were captured during spring and summer in the Subantarctic forest and in winter 2001 in a peridomestic setting in the Patagonian steppe. The dominant presence of O. longicaudatus throughout Neuquen must be incorporated into strategies to prevent human exposure to hantavirus. PMID:16007965

  4. Distribution and Abundance of Phlebotominae, Vectors of Leishmaniasis, in Argentina: Spatial and Temporal Analysis at Different Scales

    PubMed Central

    Quintana, María Gabriela; Fernández, María Soledad; Salomón, Oscar Daniel

    2012-01-01

    The spatial-temporal analysis of the abundance of insects, vectors of tegumentary leishmaniasis (TL) and visceral leishmaniasis (VL), was performed in Argentina using spatial-temporal increasing scales. In the microscale (microfocal), the effect of the primary vegetation-crop interface in vector abundance was observed, and also how the shelters, food sources, and other environmental characteristics contribute to habitat microheterogeneity and so to a microheterogeneous vector distribution. In the mesoscale (locality or epidemic focus), the results from different foci of TL (rural and periurban) and VL (urban) suggested a metapopulation structure determined partially by quantifiable habitat variables that could explain the increase of risk associated to an increase of vector-human contact due to climatic or anthropogenic changes. In the macroscale (regional), captures of vectors and records of human cases allowed the construction of risk maps and predictive models of vector distribution. In conclusion, in order to obtain valid results transferrable to control programs from spatial studies, special attention should be paid in order to assure the consistency between the spatial scales of the hypotheses, data, and analytical tools of each experimental or descriptive design. PMID:22315620

  5. Neutral theory and the species abundance distribution: recent developments and prospects for unifying niche and neutral perspectives.

    PubMed

    Matthews, Thomas J; Whittaker, Robert J

    2014-06-01

    Published in 2001, The Unified Neutral Theory of Biodiversity and Biogeography (UNTB) emphasizes the importance of stochastic processes in ecological community structure, and has challenged the traditional niche-based view of ecology. While neutral models have since been applied to a broad range of ecological and macroecological phenomena, the majority of research relating to neutral theory has focused exclusively on the species abundance distribution (SAD). Here, we synthesize the large body of work on neutral theory in the context of the species abundance distribution, with a particular focus on integrating ideas from neutral theory with traditional niche theory. First, we summarize the basic tenets of neutral theory; both in general and in the context of SADs. Second, we explore the issues associated with neutral theory and the SAD, such as complications with fitting and model comparison, the underlying assumptions of neutral models, and the difficultly of linking pattern to process. Third, we highlight the advances in understanding of SADs that have resulted from neutral theory and models. Finally, we focus consideration on recent developments aimed at unifying neutral- and niche-based approaches to ecology, with a particular emphasis on what this means for SAD theory, embracing, for instance, ideas of emergent neutrality and stochastic niche theory. We put forward the argument that the prospect of the unification of niche and neutral perspectives represents one of the most promising future avenues of neutral theory research. PMID:25360266

  6. Neutral theory and the species abundance distribution: recent developments and prospects for unifying niche and neutral perspectives

    PubMed Central

    Matthews, Thomas J; Whittaker, Robert J

    2014-01-01

    Published in 2001, The Unified Neutral Theory of Biodiversity and Biogeography (UNTB) emphasizes the importance of stochastic processes in ecological community structure, and has challenged the traditional niche-based view of ecology. While neutral models have since been applied to a broad range of ecological and macroecological phenomena, the majority of research relating to neutral theory has focused exclusively on the species abundance distribution (SAD). Here, we synthesize the large body of work on neutral theory in the context of the species abundance distribution, with a particular focus on integrating ideas from neutral theory with traditional niche theory. First, we summarize the basic tenets of neutral theory; both in general and in the context of SADs. Second, we explore the issues associated with neutral theory and the SAD, such as complications with fitting and model comparison, the underlying assumptions of neutral models, and the difficultly of linking pattern to process. Third, we highlight the advances in understanding of SADs that have resulted from neutral theory and models. Finally, we focus consideration on recent developments aimed at unifying neutral- and niche-based approaches to ecology, with a particular emphasis on what this means for SAD theory, embracing, for instance, ideas of emergent neutrality and stochastic niche theory. We put forward the argument that the prospect of the unification of niche and neutral perspectives represents one of the most promising future avenues of neutral theory research. PMID:25360266

  7. Field and long-term demonstration of a wide area quantum key distribution network.

    PubMed

    Wang, Shuang; Chen, Wei; Yin, Zhen-Qiang; Li, Hong-Wei; He, De-Yong; Li, Yu-Hu; Zhou, Zheng; Song, Xiao-Tian; Li, Fang-Yi; Wang, Dong; Chen, Hua; Han, Yun-Guang; Huang, Jing-Zheng; Guo, Jun-Fu; Hao, Peng-Lei; Li, Mo; Zhang, Chun-Mei; Liu, Dong; Liang, Wen-Ye; Miao, Chun-Hua; Wu, Ping; Guo, Guang-Can; Han, Zheng-Fu

    2014-09-01

    A wide area quantum key distribution (QKD) network deployed on communication infrastructures provided by China Mobile Ltd. is demonstrated. Three cities and two metropolitan area QKD networks were linked up to form the Hefei-Chaohu-Wuhu wide area QKD network with over 150 kilometers coverage area, in which Hefei metropolitan area QKD network was a typical full-mesh core network to offer all-to-all interconnections, and Wuhu metropolitan area QKD network was a representative quantum access network with point-to-multipoint configuration. The whole wide area QKD network ran for more than 5000 hours, from 21 December 2011 to 19 July 2012, and part of the network stopped until last December. To adapt to the complex and volatile field environment, the Faraday-Michelson QKD system with several stability measures was adopted when we designed QKD devices. Through standardized design of QKD devices, resolution of symmetry problem of QKD devices, and seamless switching in dynamic QKD network, we realized the effective integration between point-to-point QKD techniques and networking schemes. PMID:25321550

  8. Abundance, distribution, and removals of feral pigs at Big Island National Wildlife Refuge Complex 2010–2015

    USGS Publications Warehouse

    Leopold, Christina R.; Hess, Steve; Kendall, Steve J.; Judge, Seth W.

    2016-01-01

    The Hakalau Forest Unit (HFU) of Big Island National Wildlife Refuge Complex (BINWRC) has intensively monitored non-native ungulate presence and distribution during surveys of all managed areas since 1988. In this report we: 1) provide results from recent ungulate surveys and the number of removals at HFU to determine the distribution, abundance, and efficacy of removals of feral pigs, the dominant ungulate, from 2010 to 2015; 2) present results of surveys of the presence and distribution of several ungulate species at the Kona Forest Unit (KFU) of BINWRC from November of 2012 to April of 2015; 3) present results of surveys of weed presence and cover at both refuge units; and 4) present comparative analyses of forest canopy cover at KFU from visual estimates and geospatial imagery. Removals of feral pigs at HFU appear to have significantly decreased pig abundance over the study period from 2010–2015. A grand total of 1,660 feral pigs were removed from managed areas of HFU from 2010 until September of 2015. Management units 2 and 4 contained the majority of pigs at HFU. Recent surveys recorded high densities of pigs in the unenclosed, unmanaged area of Lower Maulua, reaching 14.9 ± (3.2) pigs/km2 in March of 2015. The total amount of ungulate sign ranged from 22.2 to 54.3 percent of plots surveyed at KFU from November of 2012 to April of 2015. The ability to differentiate sign of ungulate species remains problematic at KFU; although there appears to have been a significant decline in feral cattle sign at KFU, this result is likely to be unreliable because cattle and pig sign were not differentiated consistently during later surveys. Spatial distributions in weed cover are distinctive; however, some weed species may not be reliably represented due to observers’ inconsistencies in recording data and abilities to recognize less common weeds.

  9. Ion Energy Distributions and their Relative Abundance in Inductively Coupled Plasmas

    NASA Technical Reports Server (NTRS)

    Kim, J. S.; Rao, M. V. V. S.; Cappelli, M. A.; Sharma, S. P.; Arnold, James O. (Technical Monitor)

    1998-01-01

    Study of kinetics of ions and neutrals produced in high density inductively coupled plasma (ICP) discharges is of great importance for achieving a high degree of plasma assisted deposition and etching. In this paper, we present the ion energy distributions (IEDs) of various ions arriving at the grounded lower electrode. The ions were energy as well as mass analyzed by a combination of electrostatic analyzer-quadrupole mass spectrometer for pure Ar and CF4/Ar mixtures. The measurements have been made at gas pressures ranging from 30 to 100 mTorr. In addition, the IEDs were measured when the wafer-supporting electrode was also rf-powered and the effect of the self-bias was observed in the energy distributions of ions. The shapes of the IEDs are discussed an related to the sheath properties and measured electrical waveforms, as a function of pressure and applied power. Relative ion intensities were obtained by integration of each ion kinetic energy distribution function over its energy range.

  10. Influence of item distribution pattern and abundance on efficiency of benthic core sampling

    USGS Publications Warehouse

    Behney, Adam C.; O'Shaughnessy, Ryan; Eichholz, Michael W.; Stafford, Joshua D.

    2014-01-01

    ore sampling is a commonly used method to estimate benthic item density, but little information exists about factors influencing the accuracy and time-efficiency of this method. We simulated core sampling in a Geographic Information System framework by generating points (benthic items) and polygons (core samplers) to assess how sample size (number of core samples), core sampler size (cm2), distribution of benthic items, and item density affected the bias and precision of estimates of density, the detection probability of items, and the time-costs. When items were distributed randomly versus clumped, bias decreased and precision increased with increasing sample size and increased slightly with increasing core sampler size. Bias and precision were only affected by benthic item density at very low values (500–1,000 items/m2). Detection probability (the probability of capturing ≥ 1 item in a core sample if it is available for sampling) was substantially greater when items were distributed randomly as opposed to clumped. Taking more small diameter core samples was always more time-efficient than taking fewer large diameter samples. We are unable to present a single, optimal sample size, but provide information for researchers and managers to derive optimal sample sizes dependent on their research goals and environmental conditions.

  11. Starfish (Asteroidea, Echinodermata) from the Faroe Islands; spatial distribution and abundance

    NASA Astrophysics Data System (ADS)

    Ringvold, H.; Andersen, T.

    2016-01-01

    "Marine benthic fauna of the Faroe Islands" (BIOFAR) is a large programme with a focus on collecting invertebrate fauna from the Faroes (62°N and 7°W). Cruises were undertaken from 1987 to 1990, and starfish (Asteroidea, Echinodermata) collected during this time were analysed. Asteroidea were sampled at ~50% of all BIOFAR stations. A Detritus sledge and a Triangular dredge proved to be the most efficient equipment, collecting over 60% of the specimens. In total 2473 specimens were collected from 20 to 1500 m depth, including 41 species from 17 families and 31 genera. Henricia pertusa (O. F. Müller, 1776) group, Pontaster tenuispinus (Düben & Koren, 1846), and Leptychaster arcticus (M. Sars, 1851) showed highest relative abundance. Maximum species diversity was found at 500-700 m depth, which coincides with the transition zone of water masses (North Icelandic Winter Water and Arctic Intermediate Water (NI/AI)) at approximately 400-600 m depth. 63% of the species were recorded at an average-weighted depth above 600 m. Two different ordination methods (detrended correspondence analysis (DCA) and nonmetric multidimensional scaling (NMDS)) gave highly consistent representations of the community structure gradients. The first ordination axis scores did not show significant relationships with any environmental variable. Biological covariates like the presence of Lophelia corals were not significantly related to ordination scores on any axis. The second ordination axis scores were significantly correlated with depth. Temperature and salinity were highly correlated (r=0.90), and both negatively correlated with depth (r=-0.69 and r=-0.57, respectively).

  12. On the HCN and CO 2 abundance and distribution in Jupiter's stratosphere

    NASA Astrophysics Data System (ADS)

    Lellouch, E.; Bézard, B.; Strobel, D. F.; Bjoraker, G. L.; Flasar, F. M.; Romani, P. N.

    2006-10-01

    Observations of Jupiter by Cassini/CIRS, acquired during the December 2000 flyby, provide the latitudinal distribution of HCN and CO 2 in Jupiter's stratosphere with unprecedented spatial resolution and coverage. Following up on a preliminary study by Kunde et al. [Kunde, V.G., and 41 colleagues, 2004. Science 305, 1582-1587], the analysis of these observations leads to two unexpected results (i) the total HCN mass in Jupiter's stratosphere in 2000 was (6.0±1.5)×10 g, i.e., at least three times larger than measured immediately after the Shoemaker-Levy 9 (SL9) impacts in July 1994 and (ii) the latitudinal distributions of HCN and CO 2 are strikingly different: while HCN exhibits a maximum at 45° S and a sharp decrease towards high Southern latitudes, the CO 2 column densities peak over the South Pole. The total CO 2 mass is (2.9±1.2)×10 g. A possible cause for the HCN mass increase is its production from the photolysis of NH 3, although a problem remains because, while millimeter-wave observations clearly indicate that HCN is currently restricted to submillibar ( ˜0.3 mbar) levels, immediate post-impact infrared observations have suggested that most of the ammonia was present in the lower stratosphere near 20 mbar. HCN appears to be a good atmospheric tracer, with negligible chemical losses. Based on 1-dimensional (latitude) transport models, the HCN distribution is best interpreted as resulting from the combination of a sharp decrease (over an order of magnitude in K) of wave-induced eddy mixing poleward of 40° and an equatorward transport with ˜7 cms velocity. The CO 2 distribution was investigated by coupling the transport model with an elementary chemical model, in which CO 2 is produced from the conversion of water originating either from SL9 or from auroral input. The auroral source does not appear adequate to reproduce the CO 2 peak over the South Pole, as required fluxes are unrealistically high and the shape of the CO 2 bulge is not properly matched

  13. Effects of wet deposition on the abundance and size distribution of black carbon in East Asia

    NASA Astrophysics Data System (ADS)

    Kondo, Y.; Moteki, N.; Oshima, N.; Ohata, S.; Koike, M.; Shibano, Y.; Takegawa, N.; Kita, K.

    2016-05-01

    An improved understanding of the variations in the mass concentration and size distribution of black carbon (BC) in the free troposphere (FT) over East Asia, where BC emissions are very high, is needed to reliably estimate the radiative forcing of BC in climate models. We measured these parameters and the carbon monoxide (CO) concentration by conducting the Aerosol Radiative Forcing in East Asia (A-FORCE) 2013W aircraft campaign in East Asia in winter 2013 and compared these data with measurements made in the same region in spring 2009. The median BC concentrations in the FT originating from North China (NC) and South China (SC) showed different seasonal variations, which were primarily caused by variations in meteorological conditions. CO concentrations above the background were much higher in SC than in NC in both seasons, suggesting a more active upward transport of CO. In SC, precipitation greatly increased from winter to spring, leading to an increased wet deposition of BC. As a result, the median BC concentration in the FT was highest in SC air in winter. This season and region were optimal for the effective transport of BC from the planetary boundary layer to the FT. The count median diameters of the BC size distributions generally decreased with altitude via wet removal during upward transport. The altitude dependence of the BC size distributions was similar in winter and spring, in accord with the similarity in the BC mixing state. The observed BC concentrations and microphysical properties will be useful for evaluating the performance of climate models.

  14. Genome-Wide Association of Body Fat Distribution in African Ancestry Populations Suggests New Loci

    PubMed Central

    Lange, Leslie; Demerath, Ellen W.; Palmas, Walter; Wojczynski, Mary K.; Ellis, Jaclyn C.; Vitolins, Mara Z.; Liu, Simin; Papanicolaou, George J.; Irvin, Marguerite R.; Xue, Luting; Griffin, Paula J.; Nalls, Michael A.; Adeyemo, Adebowale; Liu, Jiankang; Li, Guo; Ruiz-Narvaez, Edward A.; Chen, Wei-Min; Chen, Fang; Henderson, Brian E.; Millikan, Robert C.; Ambrosone, Christine B.; Strom, Sara S.; Guo, Xiuqing; Andrews, Jeanette S.; Sun, Yan V.; Mosley, Thomas H.; Yanek, Lisa R.; Shriner, Daniel; Haritunians, Talin; Rotter, Jerome I.; Speliotes, Elizabeth K.; Smith, Megan; Rosenberg, Lynn; Mychaleckyj, Josyf; Nayak, Uma; Spruill, Ida; Garvey, W. Timothy; Pettaway, Curtis; Nyante, Sarah; Bandera, Elisa V.; Britton, Angela F.; Zonderman, Alan B.; Rasmussen-Torvik, Laura J.; Chen, Yii-Der Ida; Ding, Jingzhong; Lohman, Kurt; Kritchevsky, Stephen B.; Zhao, Wei; Peyser, Patricia A.; Kardia, Sharon L. R.; Kabagambe, Edmond; Broeckel, Ulrich; Chen, Guanjie; Zhou, Jie; Wassertheil-Smoller, Sylvia; Neuhouser, Marian L.; Rampersaud, Evadnie; Psaty, Bruce; Kooperberg, Charles; Manson, JoAnn E.; Kuller, Lewis H.; Ochs-Balcom, Heather M.; Johnson, Karen C.; Sucheston, Lara; Ordovas, Jose M.; Palmer, Julie R.; Haiman, Christopher A.; McKnight, Barbara; Howard, Barbara V.; Becker, Diane M.; Bielak, Lawrence F.; Liu, Yongmei; Allison, Matthew A.; Grant, Struan F. A.; Burke, Gregory L.; Patel, Sanjay R.; Schreiner, Pamela J.; Borecki, Ingrid B.; Evans, Michele K.; Taylor, Herman; Sale, Michele M.; Howard, Virginia; Carlson, Christopher S.; Rotimi, Charles N.; Cushman, Mary; Harris, Tamara B.; Reiner, Alexander P.; Cupples, L. Adrienne; North, Kari E.; Fox, Caroline S.

    2013-01-01

    Central obesity, measured by waist circumference (WC) or waist-hip ratio (WHR), is a marker of body fat distribution. Although obesity disproportionately affects minority populations, few studies have conducted genome-wide association study (GWAS) of fat distribution among those of predominantly African ancestry (AA). We performed GWAS of WC and WHR, adjusted and unadjusted for BMI, in up to 33,591 and 27,350 AA individuals, respectively. We identified loci associated with fat distribution in AA individuals using meta-analyses of GWA results for WC and WHR (stage 1). Overall, 25 SNPs with single genomic control (GC)-corrected p-values<5.0×10−6 were followed-up (stage 2) in AA with WC and with WHR. Additionally, we interrogated genomic regions of previously identified European ancestry (EA) WHR loci among AA. In joint analysis of association results including both Stage 1 and 2 cohorts, 2 SNPs demonstrated association, rs2075064 at LHX2, p = 2.24×10−8 for WC-adjusted-for-BMI, and rs6931262 at RREB1, p = 2.48×10−8 for WHR-adjusted-for-BMI. However, neither signal was genome-wide significant after double GC-correction (LHX2: p = 6.5×10−8; RREB1: p = 5.7×10−8). Six of fourteen previously reported loci for waist in EA populations were significant (p<0.05 divided by the number of independent SNPs within the region) in AA studied here (TBX15-WARS2, GRB14, ADAMTS9, LY86, RSPO3, ITPR2-SSPN). Further, we observed associations with metabolic traits: rs13389219 at GRB14 associated with HDL-cholesterol, triglycerides, and fasting insulin, and rs13060013 at ADAMTS9 with HDL-cholesterol and fasting insulin. Finally, we observed nominal evidence for sexual dimorphism, with stronger results in AA women at the GRB14 locus (p for interaction = 0.02). In conclusion, we identified two suggestive loci associated with fat distribution in AA populations in addition to confirming 6 loci previously identified in populations of EA. These findings reinforce

  15. Seismic Evidence of A Widely Distributed West Napa Fault Zone, Hendry Winery, Napa, California

    NASA Astrophysics Data System (ADS)

    Goldman, M.; Catchings, R.; Chan, J. H.; Criley, C.

    2015-12-01

    Following the 24 August 2014 Mw 6.0 South Napa earthquake, surface rupture was mapped along the West Napa Fault Zone (WNFZ) for a distance of ~ 14 km and locally within zones up to ~ 2 km wide. Near the northern end of the surface rupture, however, several strands coalesced to form a narrow, ~100-m-wide zone of surface rupture. To determine the location, width, and shallow (upper few hundred meters) geometry of the fault zone, we acquired an active-source seismic survey across the northern surface rupture in February 2015. We acquired both P- and S-wave data, from which we developed reflection images and tomographic images of Vp, Vs, Vp/Vs, and Poisson's ratio of the upper 100 m. We also used small explosive charges within surface ruptures located ~600 m north of our seismic array to record fault-zone guided waves. Our data indicate that at the latitude of the Hendry Winery, the WNFZ is characterized by at least five fault traces that are spaced 60 to 200 m apart. Zones of low-Vs, low-Vp/Vs, and disrupted reflectors highlight the fault traces on the tomography and reflection images. On peak-ground-velocity (PGV) plots, the most pronounced high-amplitude guided-wave seismic energy coincides precisely with the mapped surface ruptures, and the guided waves also show discrete high PGV zones associated with unmapped fault traces east of the surface ruptures. Although the surface ruptures of the WNFZ were observed only over a 100-m-wide zone at the Hendry Winery, our data indicate that the fault zone is at least 400 m wide, which is probably a minimum width given the 400-m length of our seismic profile. Slip on the WNFZ is generally considered to be low relative to most other Bay Area faults, but we suggest that the West Napa Fault is a zone of widely distributed shear, and to fully account for the total slip on the WNFZ, slip on all traces of this wide fault zone must be considered.

  16. Abundance and distribution of RNA polymerase II in Arabidopsis interphase nuclei

    PubMed Central

    Schubert, Veit; Weisshart, Klaus

    2015-01-01

    RNA polymerase II (RNAPII) is responsible for the transcription of most eukaryotic protein-coding genes. Analysing the topological distribution and quantification of RNAPII can contribute to understanding its function in interphase nuclei. Previously it was shown that RNAPII molecules in plant nuclei form reticulate structures within euchromatin of differentiated Arabidopsis thaliana nuclei rather than being organized in distinct ‘transcription factories’ as observed in mammalian nuclei. Immunosignal intensity measurements based on specific antibody labelling in maximum intensity projections of image stacks acquired by structured illumination microscopy (SIM) suggested a relative proportional increase of RNAPII in endopolyploid plant nuclei. Here, photoactivated localization microscopy (PALM) was applied to determine the absolute number and distribution of active and inactive RNAPII molecules in differentiated A. thaliana nuclei. The proportional increase of RNAPII during endopolyploidization is confirmed, but it is also shown that PALM measurements are more reliable than those based on SIM in terms of quantification. The single molecule localization results show that, although RNAPII molecules are globally dispersed within plant euchromatin, they also aggregate within smaller distances as described for mammalian transcription factories. PMID:25740920

  17. Approaches for identifying change in the abundance and historical distribution of a freshwater diatom

    NASA Astrophysics Data System (ADS)

    Spaulding, S. A.; Pite, D.; Wolfe, A. P.; Sundareshwar, P. V.

    2011-12-01

    The diatom Didymosphenia geminata (Bacillariophyta) has been considered native to high latitudes of the Northern Hemisphere. In recent years, this species has expanded its range to New Zealand and South America, forming large, invasive blooms in rivers. In contrast, historical populations in Alaska (Katmai National Park) have remained unchanged, while those in at least one Montana site have declined. In addition to a complex distributional history, this diatom has proven its remarkable ability to produce high amounts of biomass in low nutrient rivers. The high biomass is composed of the diatom cytoplasm and silica cell wall, but the high amounts of organic mater are mostly composed of extracellular mucopolysaccaride stalks. For example, in a low nutrient river, Lake Creek in Grand Teton National Park, the biovolume of D. geminata was estimated to be 57 m3 / km of stream, containing nearly 400 μg P / g stalk (dry weight). We examine the recent pattern of expansion of this species, the geochemical processes associated with the stalk, and paleolimnological record to 10,000 ybp to access the ecological factors that relate to the geographic distribution of this microscopic species on a regional and global scale.

  18. Annual variation in the distribution, abundance, and habitat response of the palila (Loxioides bailleui)

    USGS Publications Warehouse

    Scott, J.M.; Mountainspring, S.; van Riper, Charles, III; Kepler, C.B.; Jacobi, J.D.; Burr, T.A.; Giffen, J.G.

    1984-01-01

    We studied the distribution, population size, and habitat response of the Palila (Loxioides bailleui) during the 1980-1984 nonbreeding seasons to infer factors that limit the population and to develop management strategies. Distribution was fairly constant from year to year. Palila were confined to the subalpine woodland on Mauna Kea on the island of Hawaii, occurred between 2,000 and 2,850 m elevation, and reached highest densities on the southwests lopes. The population showed large annual fluctuations from 6,400 birds in 1981 to 2,000 in 1984. The width of woodland was the most important variable in determining habitat response. Palila were more common in areas with greater crown cover, taller trees, and a higher proportion of native plants in the understory. Annual variation in Palila density within a habitat reflected variation in levels of their staple food, mamane pods. The main limiting factors of the population appeared to be the availability of good habitat and levels of their staple food. Palila had strongly depressed densities in the Pohakuloa flats area. This low density could not be explained by gross habitat features or food levels. Site tenacity, thermal stress, disturbance, and disease were hypothesized explanations. Our study indicated that the most effective management strategies would be the removal of feral ungulates and certain noxious plants from Palila habitat and the extension of the woodland zone to areas now intensively grazed

  19. Large scale patterns of abundance and distribution of parasites in Mexican bumblebees.

    PubMed

    Gallot-Lavallée, Marie; Schmid-Hempel, Regula; Vandame, Rémy; Vergara, Carlos H; Schmid-Hempel, Paul

    2016-01-01

    Bumblebees are highly valued for their pollination services in natural ecosystems as well as for agricultural crops. These precious pollinators are known to be declining worldwide, and one major factor contributing to this decline are infections by parasites. Knowledge about parasites in wild bumblebee populations is thus of paramount importance for conservation purposes. We here report the geographical distribution of Crithidia and Nosema, two common parasites of bumblebees, in a yet poorly investigated country: Mexico. Based on sequence divergence of the Cytochrome b and Glycosomal glyceraldehyde phosphate deshydrogenase (gGPDAH) genes, we discovered the presence of a new Crithidia species, which is mainly distributed in the southern half of the country. It is placed by Bayesian inference as a sister species to C. bombi. We suggest the name Crithidia mexicana for this newly discovered organism. A population of C. expoeki was encountered concentrated on the flanks of the dormant volcanic mountain, Iztaccihuatl, and microsatellite data showed evidence of a bottleneck in this population. This study is the first to provide a large-scale insight into the health status of endemic bumblebees in Mexico, based on a large sample size (n=3,285 bees examined) over a variety of host species and habitats. PMID:26678506

  20. Determining the isotopic abundance of a labeled compound by mass spectrometry and how correcting for natural abundance distribution using analogous data from the unlabeled compound leads to a systematic error.

    PubMed

    Schenk, David J; Lockley, William J S; Elmore, Charles S; Hesk, Dave; Roberts, Drew

    2016-04-01

    When the isotopic abundance or specific activity of a labeled compound is determined by mass spectrometry (MS), it is necessary to correct the raw MS data to eliminate ion intensity contributions, which arise from the presence of heavy isotopes at natural abundance (e.g., a typical carbon compound contains ~1.1% (13) C per carbon atom). The most common approach is to employ a correction in which the mass-to-charge distribution of the corresponding unlabeled compound is used to subtract the natural abundance contributions from the raw mass-to-charge distribution pattern of the labeled compound. Following this correction, the residual intensities should be due to the presence of the newly introduced labeled atoms only. However, this will only be the case when the natural abundance mass isotopomer distribution of the unlabeled compound is the same as that of the labeled species. Although this may be a good approximation, it cannot be accurate in all cases. The implications of this approximation for the determination of isotopic abundance and specific activity have been examined in practice. Isotopically mixed stable-atom labeled valine batches were produced, and both these and [(14) C6 ]carbamazepine were analyzed by MS to determine the extent of the error introduced by the approach. Our studies revealed that significant errors are possible for small highly-labeled compounds, such as valine, under some circumstances. In the case with [(14) C6 ]carbamazepine, the errors introduced were minor but could be significant for (14) C-labeled compounds with particular isotopic distributions. This source of systematic error can be minimized, although not eliminated, by the selection of an appropriate isotopic correction pattern or by the use of a program that varies the natural abundance distribution throughout the correction. PMID:26916110

  1. The distribution and relative abundance of ammonia-oxidizing bacteria in lakes of the McMurdo Dry Valley, Antarctica

    USGS Publications Warehouse

    Voytek, M.A.; Priscu, J.C.; Ward, B.B.

    1999-01-01

    Marked differences in the concentrations of major ions and cations, macronutrient chemistry and general trophic status exist among the lakes of the McMurdo dry valleys in Antarctica. These differences have been attributed to both variations in stream inputs and in situ lake processes (Priscu, 1995; Lizotte et al., 1996, Spigel and Priscu, 1996). This study examines the role of nitrifying bacteria in nitrogen transformations in these lakes. Applying two polymerase chain reaction (PCR) assays targeting the 16S rRNA genes of ammonia-oxidizing bacteria and the active site of the ammonia monooxygenase gene (amoA), the distribution of ammonia-oxidizers was examined in six Antarctic lakes: Lake Bonney, Lake Hoare, Lake Fryxell and Lake Joyce in the Taylor Valley, Lake Miers in the the Miers Valley and Lake Vanda in the Wright Valley. Using a two stage amplification procedure, ammonia-oxidizers from both the beta and gamma- subclasses of the Proteobacteria were detected and their relative abundances were determined in samples collected from all sites. Ammonia-oxidizers were detected in all lakes sampled. Members of the gamma subclass were only present in the saline lakes. In general, nitrifiers were most abundant at depths above the pycnocline and were usually associated with lower concentrations of NH4 and elevated concentrations of NO3 or NO2. The distribution of nitrifiers suggests that the primary N2O peak observed in most of the lakes was produced via nitrification. Preliminary data on the rate of nitrification (Priscu et al., 1996) support the occurrence of nitrification and the presence of nitrifiers at the depth intervals where nitrifiers were detected. In all lakes, except Lake Miers, the data indicate that nitrifying bacteria have an important role in the vertical distribution of nitrogen compounds in these systems.

  2. Geographic distribution and relative abundance of the invasive glassy-winged sharpshooter: effects of temperature and egg parasitoids.

    PubMed

    Gutierrez, Andrew Paul; Ponti, Luigi; Hoddle, Mark; Almeida, Rodrigo P P; Irvin, Nicola A

    2011-08-01

    The capacity to predict the geographic distribution and relative abundance of invasive species is pivotal to developing policy for eradication or control and management. Commonly used methods fall under the ambit of ecological niche models (ENMs). These methods were reviewed and shortcomings identified. Weather-driven physiologically based demographic models (PBDMs) are proposed that resolve many of the deficiencies of ENMs. The PBDM approach is used to analyze the invasiveness of the polyphagous glassy-winged sharpshooter (Homalodisca vitripennis [Germar]), a pest native to the southeastern United States and northeastern Mexico that extended its range into California in 1989. Glassy-winged sharpshooter vectors the pathogenic bacterium, Xylella fastidiosa (Wells) that causes Pierce's disease in grape and scorch-like diseases in other plants. PBDMs for glassy-winged sharpshooter and its egg parasitoids (Gonatocerus ashmeadi Girault and G. triguttatus Girault) were developed and linked to a PBDM for grape published by Wermelinger et al. (1991). Daily weather data from 108 locations across California for the period 1995-2006 were used to drive the PBDM system, and GRASS GIS was used to map the simulation results. The geographic distribution of glassy-winged sharpshooter, as observed, is predicted to be largely restricted to the warm areas of southern California, with the action of the two egg parasitoids reducing its abundance >90%. The average indispensable mortality contributed by G. triguttatus is <1%. A temperature-dependent developmental rate model for X. fastidiosa was developed that suggests its geographic range is also limited to the warm inland areas of southern California. Biological control of glassy-winged sharpshooter further decreases the pathogen's relative range. Climate warming scenarios of +2°C and +3°C suggest that the distribution and severity of glassy-winged sharpshooter and X. fastidiosa will increase in the agriculturally rich central valley

  3. Species Abundance Patterns in Complex Evolutionary Dynamics

    NASA Astrophysics Data System (ADS)

    Tokita, Kei

    2004-10-01

    An analytic theory of species abundance patterns (SAPs) in biological networks is presented. The theory is based on multispecies replicator dynamics equivalent to the Lotka-Volterra equation, with diverse interspecies interactions. Various SAPs observed in nature are derived from a single parameter. The abundance distribution is formed like a widely observed left-skewed lognormal distribution. As the model has a general form, the result can be applied to similar patterns in other complex biological networks, e.g., gene expression.

  4. Distributed nuclear medicine applications using World Wide Web and Java technology.

    PubMed

    Knoll, P; Höll, K; Mirzaei, S; Koriska, K; Köhn, H

    2000-01-01

    At present, medical applications applying World Wide Web (WWW) technology are mainly used to view static images and to retrieve some information. The Java platform is a relative new way of computing, especially designed for network computing and distributed applications which enables interactive connection between user and information via the WWW. The Java 2 Software Development Kit (SDK) including Java2D API, Java Remote Method Invocation (RMI) technology, Object Serialization and the Java Advanced Imaging (JAI) extension was used to achieve a robust, platform independent and network centric solution. Medical image processing software based on this technology is presented and adequate performance capability of Java is demonstrated by an iterative reconstruction algorithm for single photon emission computerized tomography (SPECT). PMID:10997440

  5. Borrelia bavariensis sp. nov. is widely distributed in Europe and Asia.

    PubMed

    Margos, Gabriele; Wilske, Bettina; Sing, Andreas; Hizo-Teufel, Cecilia; Cao, Wu-Chun; Chu, Chenyi; Scholz, Holger; Straubinger, Reinhard K; Fingerle, Volker

    2013-11-01

    Since the original description of Borrelia bavariensis sp. nov. in 2009, additional samples available from humans and ticks from Europe and Mongolia, respectively, have been used to further characterize Borrelia strains belonging to this group of spirochaetes that utilize rodents as reservoir hosts. These investigations suggested the presence of related strains in Europe and Asia and confirmed their status as representing a distinct species. Furthermore, samples that were investigated by researchers from China and Japan confirm the ecological relationship of members of this proposed species with rodents and suggest that it has a wide distribution in Eurasia. Here, we use phylogenetic and genetic distance analyses to validate B. bavariensis sp. nov. as a species within the Borrelia burgdorferi sensu lato species complex. The type strain is PBi(T) ( = DSM 23469(T) = BAA-2496(T)). PMID:23838444

  6. The GIRAFFE Inner Bulge Survey (GIBS). II. Metallicity distributions and alpha element abundances at fixed Galactic latitude

    NASA Astrophysics Data System (ADS)

    Gonzalez, O. A.; Zoccali, M.; Vasquez, S.; Hill, V.; Rejkuba, M.; Valenti, E.; Rojas-Arriagada, A.; Renzini, A.; Babusiaux, C.; Minniti, D.; Brown, T. M.

    2015-12-01

    Aims: We investigate metallicity and α-element abundance gradients along a Galactic longitude strip, at latitude b ~ -4°, with the aim of providing observational constraints for the structure and origin of the Milky Way bulge. Methods: High-resolution (R ~ 22 500) spectra for 400 K giants, in four fields within -4.8° ≲ b ≲ -3.4° and -10° ≲ l ≲ +10°, were obtained within the GIRAFFE Inner Bulge Survey (GIBS) project. To this sample we added another ~400 stars in Baade's Window at (l,b) = (1°,-4°), observed with the identical instrumental configuration: FLAMES GIRAFFE in Medusa mode with HR13 setup. All target stars lie within the red clump of the bulge colour-magnitude diagram, thus minimising contamination from the disc or halo stars. The spectroscopic stellar surface parameters were derived with an automatic method based on the GALA code, while the [Ca/Fe] and [Mg/Fe] abundances as a function of [Fe/H] were derived through a comparison with the synthetic spectra using MOOG. We constructed the metallicity distributions for the entire sample, and for each field individually, in order to investigate the presence of gradients or field-to-field variations in the shape of the distributions. Results: The metallicity distributions in the five fields are consistent with being drawn from a single parent population, indicating the absence of a gradient along the major axis of the Galactic bar. The global metallicity distribution is nicely fitted by two Gaussians. The metal-poor component is rather broad, with a mean at ⟨ [Fe/H] ⟩ = -0.31 dex and σ = 0.31 dex. The metal-rich component is narrower, with mean ⟨ [Fe/H] ⟩ = + 0.26 and σ = 0.2 dex. The [Mg/Fe] ratio follows a tight trend with [Fe/H], with enhancement with respect to solar in the metal-poor regime similar to the value observed for giant stars in the local thick disc. [Ca/Fe] abundances follow a similar trend, but with a considerably larger scatter than [Mg/Fe]. A decrease in [Mg/Fe] is

  7. Abundance and distribution of microorganisms involved in denitrification in sediments of a Myriophyllum elatinoides purification system for treating swine wastewater.

    PubMed

    Li, Xi; Zhang, Miaomiao; Liu, Feng; Li, Yong; He, Yang; Zhang, Shunan; Wu, Jinshui

    2015-11-01

    Environmental pollution from livestock production, particularly swine production, is often managed by the use of constructed wetlands, which incorporate plants such as Myriophyllum elatinoides as a means of treating wastewater. The M. elatinoides purification system has been shown to effectively remove, via nitrification and denitrification, more than 90% of the total nitrogen (TN) and 84% of the NH4 (+)-N produced in swine wastewater. However, the mechanisms of variation in aquatic environmental factors and how the interaction of these factors affects denitrification by microorganisms in sediments remain poorly understood. In this study, the impacts of dissolved oxygen (DO), TN, NH4(+)-N, and NO3(-)-N on the abundance, diversity, and community distribution of denitrifiers in the sediments from different concentrations and types of wastewater including tap water (CK), two strengths of synthetic wastewater: 200 mg NH4(+)-N L(-1) (T1) and 400 mg NH4(+)-N L(-1) (T2), swine wastewater diluted 50% (T3), and swine wastewater (T4) were investigated in a microcosm experiment. A significant improvement was observed in the abundance of denitrification genes (nirK and nirS) in response to increased NO3(-)-N and DO in the swine wastewater sediments. The abundance of these denitrification genes was highest in the T4 sediments compared with other treatments. Terminal restriction fragment length polymorphism (T-RFLP) analysis revealed that the DO, TN, and NH4(+)-N positively impacted the richness index (S) of the nirK denitrifiers in T1, whereas the NO3(-)-N negatively affected the Simpson diversity index (D) of nirK and nirS denitrifiers in T3 and T4. However, the NO3(-)-N positively affected the nirK and nirS denitrifier community distribution, whereas the DO negatively affected the nirK and nirS denitrifier distribution in T3 and T4. These findings will be helpful in that they allow us to recognize the effects of environmental factors on the formation of the denitrifiers in

  8. Diel and distributional abundance patterns of fish embryos and larvae in the lower Columbia and Deschutes rivers

    USGS Publications Warehouse

    Gadomski, D.M.; Barfoot, C.A.

    1998-01-01

    Diel and distributional abundance patterns of free embryos and larvae of fishes in the lower Columbia River Basin were investigated. Ichthyoplankton samples were collected in 1993 during day and night in the main-channel and a backwater of the lower Columbia River, and in a tributary, the Deschutes River. Fish embryos and larvae collected in the main-channel Columbia River were primarily (85.6%) of native taxa (peamouth Mylocheilus caurinus, northern squawfish Ptychocheilus oregonensis, suckers Catostomus spp., and sculpins Cottus spp.), with two introduced species (American shad Alosa sapidissima and common carp Cyprinus carpio) comprising a smaller percentage of the catch (13.3%). Similarly, in the Deschutes River native taxa [lampreys (Petromyzontidae), minnows (Cyprinidae), and suckers Catostomus spp.] dominated collections (99.5% of the catch). In contrast, 83.5% of embryos and larvae in the Columbia River backwater were of introduced taxa [American shad, common carp, and sunfishes (Centrarchidae)]. In all locations, all dominant taxa except sculpins were collected in significantly greater proportions at night. Taxon-specific differences in proportions of embryos and larvae collected at night can in some instances be related to life history styles. In the main-channel Columbia River, northern squawfish and peamouth were strongly nocturnal and high proportions still had yolksacs, suggesting that they had recently hatched and were drifting downriver to rearing areas. In contrast, sculpin abundances were similar during day and night, and sculpins mostly had depleted yolksacs, indicating sculpins were feeding and rearing in offshore limnetic habitats. Taxon-specific diel abundance patterns and their causes must be considered when designing effective sampling programs for fish embryos and larvae.

  9. Effects of urbanization on the distribution and abundance of amphibians and invasive species in southern California streams

    USGS Publications Warehouse

    Riley, S.P.D.; Busteed, G.T.; Kats, L.B.; Vandergon, T.L.; Lee, L.F.S.; Dagit, R.G.; Kerby, J.L.; Fisher, R.N.; Sauvajot, R.M.

    2005-01-01

    Urbanization negatively affects natural ecosystems in many ways, and aquatic systems in particular. Urbanization is also cited as one of the potential contributors to recent dramatic declines in amphibian populations. From 2000 to 2002 we determined the distribution and abundance of native amphibians and exotic predators and characterized stream habitat and invertebratecommunities in 35 streams in an urbanized landscape north of Los Angeles (U.S.A.). We measured watershed development as the percentage of area within each watershed occupied by urban land uses. Streams in more developed watersheds often had exotic crayfish (Procambarus clarkii) and fish, and had fewer native species such as California newts (Taricha torosa) and California treefrogs (Hyla cadaverina). These effects seemed particularly evident above 8% development, a result coincident with other urban stream studies that show negative impacts beginning at 10-15% urbanization. For Pacific treefrogs (H. regilla), the most widespread native amphibian, abundance was lower in the presence of exotic crayfish, although direct urbanization effects were not found. Benthic macroinvertebrate communities were also less diverse in urban streams, especially for sensitive species. Faunal community changes in urban streams may be related to changes in physical stream habitat, such as fewer pool and more run habitats and increased water depth and flow, leading to more permanent streams. Variation in stream permanence was particularly evident in 2002, a dry year when many natural streams were dry but urban streams were relatively unchanged. Urbanization has significantly altered stream habitat in this region and may enhance invasion by exotic species and negatively affect diversity and abundance of native amphibians. ??2005 Society for Conservation Biology.

  10. Amphiura filiformis (Ophiuroidea: Echinodermata) in the North Sea. Distribution, present and former abundance and size composition

    NASA Astrophysics Data System (ADS)

    Duineveld, G. C. A.; Künitzer, A.; Heyman, R. P.

    During the North Sea Benthos Survey undertaken by the ICES Benthos Ecology Working Group in spring 1986, a synoptic inventory was made of the benthos in the southern, central and part of the northern North Sea. The present paper deals with the status of the population of the infaunal ophiuroid Amphiura filiformis on the basis of measurements from 150 stations. A. filiformis was found at all the offshore muddy stations, but densities were generally highest in the shallow area south of the Dogger Bank. Stations with more than 1000 ind·m -2 were mainly situated near the frontiers between turbid and summer-stratified water masses, viz. along the southern border of the Oyster Ground, the southern slope of the Dogger Bank and in the northern part of the Pleistocene Elbe river valley. The size-distributions of A. filiformis show that juveniles were generally scarce at stations with high numbers of adults, whereas highest numbers of juveniles occur at stations with few adults. An unequivocal relation between adults and juveniles was, however, absent. This stresses the importance of other factors involved in recruitment. Comparison between the present and former (1938 and 1950) density of A. filiformis suggests that density has increased in the shallower parts but has remained stable in the deeper northern North Sea. An increase of A. filiformis shallow part of the North Sea could point to an enhanced food supply for the benthos, which may have some relation to the eutrophication in nearshore areas.

  11. Abundance and distribution of boron in the Hauzenberg (Bavaria) granite complex

    SciTech Connect

    Sauerer, A.; Troll, G. )

    1990-01-01

    Hercynian S-type granites from the Hauzenberg igneous complex show a range of boron concentration from 1 to 12 ppm. The whole-rock boron data are not significantly correlated with concentrations of other trace elements (Zr, Rb, Ba, Sr, Ni, V, Co, Cu, Zn, F); neither is boron correlated with the major elements (except with sodium) or with the differentiation index (DI). The boron budget in the rock-forming minerals (plagioclase, alkali feldspar, quartz, biotite, muscovite) of the tourmaline-free granites reveals that the highest concentrations of boron occur in muscovite, whereas the greatest amount of boron is incorporated in plagioclase (57-69%) due to its high modal amount. Boron in plagioclase increases with the extent of of sericitization (obtained by X-ray diffractometry). Muscovite in a pegmatite contains more than 50% of the total boron. The areal distribution of boron within the complex is neither uniform nor random; an increase of boron concentrations from granodioritic to granitic rocks is indicated, whereas the late differentiates are depleted in boron.

  12. Abundance, distribution, mobility and oligomeric state of M₂ muscarinic acetylcholine receptors in live cardiac muscle.

    PubMed

    Nenasheva, Tatiana A; Neary, Marianne; Mashanov, Gregory I; Birdsall, Nigel J M; Breckenridge, Ross A; Molloy, Justin E

    2013-04-01

    M2 muscarinic acetylcholine receptors modulate cardiac rhythm via regulation of the inward potassium current. To increase our understanding of M2 receptor physiology we used Total Internal Reflection Fluorescence Microscopy to visualize individual receptors at the plasma membrane of transformed CHO(M2) cells, a cardiac cell line (HL-1), primary cardiomyocytes and tissue slices from pre- and post-natal mice. Receptor expression levels between individual cells in dissociated cardiomyocytes and heart slices were highly variable and only 10% of murine cardiomyocytes expressed muscarinic receptors. M2 receptors were evenly distributed across individual cells and their density in freshly isolated embryonic cardiomyocytes was ~1μm(-2), increasing at birth (to ~3μm(-2)) and decreasing back to ~1μm(-2) after birth. M2 receptors were primarily monomeric but formed reversible dimers. They diffused freely at the plasma membrane, moving approximately 4-times faster in heart slices than in cultured cardiomyocytes. Knowledge of receptor density and mobility has allowed receptor collision rate to be modeled by Monte Carlo simulations. Our estimated encounter rate of 5-10 collisions per second, may explain the latency between acetylcholine application and GIRK channel opening. PMID:23357106

  13. Abundance, distribution, mobility and oligomeric state of M2 muscarinic acetylcholine receptors in live cardiac muscle

    PubMed Central

    Nenasheva, Tatiana A.; Neary, Marianne; Mashanov, Gregory I.; Birdsall, Nigel J.M.; Breckenridge, Ross A.; Molloy, Justin E.

    2013-01-01

    M2 muscarinic acetylcholine receptors modulate cardiac rhythm via regulation of the inward potassium current. To increase our understanding of M2 receptor physiology we used Total Internal Reflection Fluorescence Microscopy to visualize individual receptors at the plasma membrane of transformed CHOM2 cells, a cardiac cell line (HL-1), primary cardiomyocytes and tissue slices from pre- and post-natal mice. Receptor expression levels between individual cells in dissociated cardiomyocytes and heart slices were highly variable and only 10% of murine cardiomyocytes expressed muscarinic receptors. M2 receptors were evenly distributed across individual cells and their density in freshly isolated embryonic cardiomyocytes was ~ 1 μm− 2, increasing at birth (to ~ 3 μm− 2) and decreasing back to ~ 1 μm− 2 after birth. M2 receptors were primarily monomeric but formed reversible dimers. They diffused freely at the plasma membrane, moving approximately 4-times faster in heart slices than in cultured cardiomyocytes. Knowledge of receptor density and mobility has allowed receptor collision rate to be modeled by Monte Carlo simulations. Our estimated encounter rate of 5–10 collisions per second, may explain the latency between acetylcholine application and GIRK channel opening. PMID:23357106

  14. Distribution and abundance of diurnal and nocturnal dipterous flies in the Federal Territory, Putrajaya.

    PubMed

    Nazni, W A; Nooraidah, H; Jeffery, J; Azahari, A H; Mohd Noor, I; Sadiyah, I; Lee, H L

    2007-12-01

    A study of diurnal and nocturnal distribution of flies was conducted in Putrajaya. Six different ecological habitats were selected, namely: botanical garden, lake-area, administration building, wetland, jungle fringes and housing areas. Two different type of traps, cylinderical and rectangular in shape were used in the study. Baits used in these traps were yeast, sugar, salted fish, shrimp paste and fresh liver. Traps were placed at the sites throughout the diurnal and nocturnal periods. The time for sunrise and sunset was determined using a Geographical Positioning System gadget (GARMIN) at the sites. Both type of traps were equally effective in trapping flies. There was no significant difference between both types of traps in their ability to trap flies (p > 0.05). A total of 1,534 flies were collected and identified from both types of trap using the multiple baits and habitats. The collection consisted of 23 species of flies classified under 6 families. The highest number of flies were caught from the lake-area followed by botanical garden, administration building, housing areas, wetland and jungle fringes. The most dominant species was Chrysomya megacephala, followed by species of Sarcophagidae and Musca domestica. Diurnal period had more numbers of flies (81.55%) compared to the nocturnal periods (18.45%). Some species of flies were strictly diurnal, some exibited both diurnal and nocturnal activities while only one species was strictly nocturnal. PMID:18209709

  15. Activity, distribution, and abundance of methane-oxidizing bacteria in the near surface soils of onshore oil and gas fields.

    PubMed

    Xu, Kewei; Tang, Yuping; Ren, Chun; Zhao, Kebin; Wang, Wanmeng; Sun, Yongge

    2013-09-01

    Methane-oxidizing bacteria (MOB) have long been used as an important biological indicator for oil and gas prospecting, but the ecological characteristics of MOB in hydrocarbon microseep systems are still poorly understood. In this study, the activity, distribution, and abundance of aerobic methanotrophic communities in the surface soils underlying an oil and gas field were investigated using biogeochemical and molecular ecological techniques. Measurements of potential methane oxidation rates and pmoA gene copy numbers showed that soils inside an oil and gas field are hot spots of methane oxidation and MOB abundance. Correspondingly, terminal restriction fragment length polymorphism analyses in combination with cloning and sequencing of pmoA genes also revealed considerable differences in the methanotrophic community composition between oil and gas fields and the surrounding soils. Principal component analysis ordination furthermore indicated a coincidence between elevated CH4 oxidation activity and the methanotrophic community structure with type I methanotrophic Methylococcus and Methylobacter, in particular, as indicator species of oil and gas fields. Collectively, our results show that trace methane migrated from oil and gas reservoirs can considerably influence not only the quantity but also the structure of the methanotrophic community. PMID:23090054

  16. Estimating number of species and relative abundances in stream-fish communities: effects of sampling effort and discontinuous spatial distributions

    USGS Publications Warehouse

    Angermeier, Paul L.; Smogor, Roy A.

    1995-01-01

    We sampled fishes and measured microhabitat in series of contiguous habitat units (riffles, runs, pools) in three Virginia streams. We used Monte Carlo simulations to construct hypothetical series of habitat units, then examined how number of species, similarity in relative abundances, and number of microhabitats accumulated with increasing number of habitat units (i.e., sampling effort). Proportions of all species and microhabitats represented were relatively low and variable at low sampling effort, but increased asymptotically and became less variable with greater sampling effort. To facilitate comparisons among streams, we fitted simulation results to negative exponential curves. The curves indicated that 90% of the species present were usually found by sampling 5 to 14 habitat units (stream length of 22–67 stream widths). Estimates of species relative abundances required less sampling effort for a given accuracy than estimates of number of species. Rates of species accumulation (with effort) varied among streams and reflected discontinuity in species distributions among habitat units. Most discontinuity seemed to be due to low population density rather than to habitat selectivity. Results from an Illinois stream corroborated our findings from Virginia, and suggested that greater sampling effort is needed to characterize fish community structure in more homogeneous stream reaches.

  17. Top predator distribution and abundance across the eastern Gulf of Alaska: Temporal variability and ocean habitat associations

    NASA Astrophysics Data System (ADS)

    Yen, Peggy P. W.; Sydeman, William J.; Morgan, Ken H.; Whitney, Frank A.

    2005-03-01

    We studied interannual variation in marine bird and mammal distribution and abundance in the eastern Gulf of Alaska (GOA) over 8 years, 1996-2003. We identified and enumerated seabirds, pinnipeds and cetaceans along a replicated 1500 km survey path, representing 450 km 2 of coastal and 2000 km 2 of oceanic habitat. Near-surface temperature (5 m depth) fluctuated considerably from year to year, in part due to the timing of the survey, with an early survey in 1996 and a late survey in 2002. Many species were observed across the entire gradient, particularly procellariiform (tubenose) seabirds and Dall's porpoise ( Phocoenoides dalli). We observed peaks in abundance in the oceanic zone in 1998, 2001, and 2002, owing primarily to influxes of dark shearwaters ( Puffinus spp.) and Leach's storm-petrels ( Oceanodroma leuchora). Rank correlations indicated similar year-to-year changes in density between species, and species-specific responses to temperature and ocean productivity as indexed by nitrate and chlorophyll a concentrations. We developed topographic/bathymetric models of habitat selection for the coastal zone. Although we found some distinct habitat preferences in this zone, overall we observed a continuum in the marine bird and mammal community across the entire eastern GOA. The strength of the coupling between coastal and oceanic environments as provided by variation in top predator dispersion appears related to large-scale variations in oceanography, though we have yet to fully investigate causal mechanisms.

  18. Wide Distribution of Mitochondrial Genome Rearrangements in Wild Strains of the Cultivated Basidiomycete Agrocybe aegerita

    PubMed Central

    Barroso, G.; Blesa, S.; Labarere, J.

    1995-01-01

    We used restriction fragment length polymorphisms to examine mitochondrial genome rearrangements in 36 wild strains of the cultivated basidiomycete Agrocybe aegerita, collected from widely distributed locations in Europe. We identified two polymorphic regions within the mitochondrial DNA which varied independently: one carrying the Cox II coding sequence and the other carrying the Cox I, ATP6, and ATP8 coding sequences. Two types of mutations were responsible for the restriction fragment length polymorphisms that we observed and, accordingly, were involved in the A. aegerita mitochondrial genome evolution: (i) point mutations, which resulted in strain-specific mitochondrial markers, and (ii) length mutations due to genome rearrangements, such as deletions, insertions, or duplications. Within each polymorphic region, the length differences defined only two mitochondrial types, suggesting that these length mutations were not randomly generated but resulted from a precise rearrangement mechanism. For each of the two polymorphic regions, the two molecular types were distributed among the 36 strains without obvious correlation with their geographic origin. On the basis of these two polymorphisms, it is possible to define four mitochondrial haplotypes. The four mitochondrial haplotypes could be the result of intermolecular recombination between allelic forms present in the population long enough to reach linkage equilibrium. All of the 36 dikaryotic strains contained only a single mitochondrial type, confirming the previously described mitochondrial sorting out after cytoplasmic mixing in basidiomycetes. PMID:16534984

  19. [Association of the abundance and vertical distribution of tuna and beakfish in the southeast of the Caribbean sea].

    PubMed

    Eslava, Nora; González, Leo W; Gaertner, Daniel

    2003-03-01

    The longline hooks suspension depth was estimated using the Mechanic Imitation of Flexible Systems method. The vertical distribution of tunas and billfish was determined by the relative abundance index, obtained from the catch by 11 to 25 m -long longline vessels, -based at Cumaná, Venezuela, South-eastern Caribbean Sea in depths of 65 to 142 m. The CPUE was evaluated per species, according to depth. High values were found for most of the captured species in the layer from 105 to 125 m. Yellowfin tuna (Thunnus albacares) showed the highest yield (3.37 fish/100 hooks) and blue marlin (Makaira nigricans) the lowest (0.04 fish/100 hooks). However, the statistical comparison did not allow to reject the hypothesis of lack of depth efect (Kruskal-Wallis p > .05), and demonstrated a homogeneous distribution of yellowfin tuna (Thunnus albacares), albacore (Thunnus alalunga), bigeye tuna (Thunnus obesus), sailfish (Istiophorus albicans), white marlin (Tetrapturus albidus) and blue marlin (Makaira nigricans) in the water column. The conclusion is that fish concentration in the Southern border of the Caribbean Sea is possibly due to several hydroclimatic factors--which affect tuna and billfish catching--such as water temperature and dissolved oxygen concentration which limit the distribution according to depth. PMID:15162696

  20. Lowland tapir (Tapirus terrestris) distribution, activity patterns and relative abundance in the Greater Madidi-Tambopata Landscape.

    PubMed

    Wallace, Robert; Ayala, Guido; Viscarra, Maria

    2012-12-01

    Lowland tapir distribution is described in northwestern Bolivia and southeastern Peru within the Greater Madidi-Tambopata Landscape, a priority Tapir Conservation Unit, using 1255 distribution points derived from camera trapping efforts, field research and interviews with park guards from 5 national protected areas and hunters from 19 local communities. A total of 392 independent camera trapping events from 14 camera trap surveys at 11 sites demonstrated the nocturnal and crepuscular activity patterns (86%) of the lowland tapir and provide 3 indices of relative abundance for spatial and temporal comparison. Capture rates for lowland tapirs were not significantly different between camera trapping stations placed on river beaches versus those placed in the forest. Lowland tapir capture rates were significantly higher in the national protected areas of the region versus indigenous territories and unprotected portions of the landscape. Capture rates through time suggested that lowland tapir populations are recovering within the Tuichi Valley, an area currently dedicated towards ecotourism activities, following the creation (1995) and subsequent implementation (1997) of the Madidi National Park in Bolivia. Based on our distributional data and published conservative estimates of population density, we calculated that this transboundary landscape holds an overall lowland tapir population of between 14 540 and 36 351 individuals, of which at least 24.3% are under protection from national and municipal parks. As such, the Greater Madidi-Tambopata Landscape should be considered a lowland tapir population stronghold and priority conservation efforts are discussed in order to maintain this population. PMID:23253372

  1. Genome-wide analysis of tandem repeats in Tribolium castaneum genome reveals abundant and highly dynamic tandem repeat families with satellite DNA features in euchromatic chromosomal arms

    PubMed Central

    Pavlek, Martina; Gelfand, Yevgeniy; Plohl, Miroslav; Meštrović, Nevenka

    2015-01-01

    Although satellite DNAs are well-explored components of heterochromatin and centromeres, little is known about emergence, dispersal and possible impact of comparably structured tandem repeats (TRs) on the genome-wide scale. Our bioinformatics analysis of assembled Tribolium castaneum genome disclosed significant contribution of TRs in euchromatic chromosomal arms and clear predominance of satellite DNA-typical 170 bp monomers in arrays of ≥5 repeats. By applying different experimental approaches, we revealed that the nine most prominent TR families Cast1–Cast9 extracted from the assembly comprise ∼4.3% of the entire genome and reside almost exclusively in euchromatic regions. Among them, seven families that build ∼3.9% of the genome are based on ∼170 and ∼340 bp long monomers. Results of phylogenetic analyses of 2500 monomers originating from these families show high-sequence dynamics, evident by extensive exchanges between arrays on non-homologous chromosomes. In addition, our analysis shows that concerted evolution acts more efficiently on longer than on shorter arrays. Efficient genome-wide distribution of nine TR families implies the role of transposition only in expansion of the most dispersed family, and involvement of other mechanisms is anticipated. Despite similarities in sequence features, FISH experiments indicate high-level compartmentalization of centromeric and euchromatic tandem repeats. PMID:26428853

  2. Image irradiance distribution in the 3MI wide field of view polarimeter

    NASA Astrophysics Data System (ADS)

    Gabrieli, Riccardo; Bartoli, Alessandro; Maiorano, Michele; Bruno, Umberto; Olivieri, Monica; Calamai, Luciano; Manolis, Ilias; Labate, Demetrio

    2015-09-01

    The Multi-Viewing, Multi-Channel, Multi-Polarisation Imager (3MI) is an imaging radiometer for the ESA/Eumetsat MeteOp-SG programme. Based on the heritage of the POLDER/PARASOL instrument, 3MI is designed to collect global observations of the top-of-atmosphere polarised bi-directional reflectance distribution function in 12 spectral bands, by observing the same target from multiple views using a pushbroom scanning concept. The demanding challenge of the 3MI optical design is represented by the polarisation and image irradiance fall-off (throughput uniformity) requirements. In a generic optical system, the image irradiance fall-off is a function of: target radiance distribution and polarisation, entrance pupil size and optical transmittance variations across the field of view (FOV), distortion and vignetting. In most applications these aspects can be considered as independent; however, when high image irradiance uniformity is required, they have to be considered as linked together. This is particularly true in case of a wide FOV polarimeter as 3MI is. In order to properly account for these aspects, an irradiance fall-off analytical model has been developed in the frame of 3MI Optics Pre-Development (OPD), whose aim is to mitigate any technological risks associated with the 3MI instrument development. It is shown how it is possible to control the image irradiance distribution acting on optical design parameters (e.g. distortion and entrance pupil size variation with FOV). Moreover, the impact of polarisation performances on irradiance fall-off is discussed.

  3. Distribution, relative abundance and size composition of the threatened serranid Epinephelus daemelii in New South Wales, Australia.

    PubMed

    Harasti, D; Malcolm, H

    2013-08-01

    The aim of this study was to undertake baseline surveys on the distribution, relative abundance and total lengths (LT ) of a threatened epinephelid species, black cod Epinephelus daemelii, in New South Wales (NSW), Australia, their westernmost distribution. Diving surveys at 83 sites where E. daemelii were expected to occur were undertaken from 2009 to 2011 using 45 min roving diver counts. Sites were spread through northern NSW, including Lord Howe Island (LHI). Individual fish were measured using stereo-video, enabling accurate length measurement. Surveys were repeated at a sub-set of sites to assess temporal variation across days, seasons and years. A total of 117 E. daemelii were recorded during baseline surveys, occurring at 42% of the surveyed sites. Across all surveys, the highest numbers recorded (14-18 individuals at a site) were at the outer Solitary Islands and Fish Rock (Smoky Cape). Fewer E. daemelii were found southwards, but two sites in the Port Stephens-Great Lakes Marine Park had consistent numbers (three to six) over four annual surveys. Only 12 E. daemelii were recorded from eight of the 18 sites at LHI. The numbers observed at re-surveyed sites were generally stable over years. There were latitudinal and cross-shelf differences in LT . Individuals in the north were found to be significantly larger than those further south, and fish offshore were significantly larger than those inshore. The largest measured fish was 135 cm, smaller than the maximum LT (c. 170 cm) recorded for this species. The smallest fish was 26 cm. Overall, it is considered that the abundance of E. daemelii is low compared to anecdotal data even though they have been protected for c. 30 years in NSW. These findings provide an essential benchmark to assess ongoing status and response to protective management. PMID:23902312

  4. Annual cycle in abundance, distribution, and size in relation to hydrography of important copepod species in the western Arctic Ocean

    NASA Astrophysics Data System (ADS)

    Ashjian, Carin J.; Campbell, Robert G.; Welch, Harold E.; Butler, Mari; Van Keuren, Donna

    2003-10-01

    A yearlong study of the zooplankton biomass and the abundance, vertical distribution, life stage proportions, and body size and condition for five target copepod species ( Calanus glacialis, C. hyperboreus, Metridia longa, Microcalanus pygmaeus, Oithona similis) was conducted from October 1997 to October 1998 in the Western Arctic Ocean. The research was staged from Ice Station SHEBA that drifted from Canadian Basin over the Northwind Ridge and Chukchi Plateau and back over the Basin during this period. Four hydrographic regimes were surveyed during the period of the study. Zooplankton biomass was least over the basin during the fall and winter and greatest over the Chukchi Plateau during summer, with most biomass in the 200-1500 m depth interval except during summer when greatest biomass was present in the upper 200 m. The five copepod species followed two general life history strategies: (1) sustained reproduction with all life stages present throughout the year and constant depth distribution ( M. longa, M. pygmaeus, O. similis) and (2) pulsed reproduction with overlapping cohorts present and ontogenetic redistribution of preferred depths through the year ( C. glacialis, C. hyperboreus). Body size and condition did not demonstrate consistent temporal or regional patterns. Based on population age structure, both C. hyperboreus and C. glacialis were reproducing in the Arctic Ocean. However, extremely low abundances of C. glacialis suggested that this species may not be self-sustaining in the Arctic Ocean. Plankton biomass was consistent with that observed in recent studies and supported an emerging paradigm of a more productive Arctic Ocean than traditionally believed.

  5. Optical constants using two particle size distributions: On-going laboratory efforts to quantitatively address clay abundance on Mars

    NASA Astrophysics Data System (ADS)

    Roush, T. L.; Bishop, J. L.; Brown, A. J.; Blake, D.; Bristow, T.

    2013-12-01

    Data obtained at visible and near-infrared wavelengths by OMEGA on MarsExpress and CRISM on MRO provide definitive evidence for the presence of phyllosilicates and other hydrated phases on Mars. A diverse range of both Fe/Mg-OH and Al-OH-bearing phyllosilicates were identified including the smectites, nontronite, saponite, and montmorillonite. In order to constrain the abundances of these phyllosilicates spectral analyses of mixtures of pure end-members are needed. We report on the final stages of our on-going effort to enable the quantitative evaluation of the abundance of hydrated-hydroxylated silicates when they are contained in mixtures. We include several two component mixtures of hydrated/hydroxylated silicates with each other and with two analogs for other martian materials: pyroxene (enstatite) and palagonitic soil (an alteration product of basaltic glass). For the hydrated-hydroxylated silicates we include saponite and montmorillonite (Mg- and Al- rich smectites). We prepared three size separates of each end-member for study: 20-45, 63-90, and 125-150 μm. We used scanning electron microscope images to characterize the grain size distribution, of each sample. Using the grain size distribution, we have derived initial estimates of the optical constants of these materials and compare them to values estimated for the same samples, but using the mean particle size of the sieve fraction. We discuss the results of our calculations for these materials and their implications for modeling the physical mixtures and eventual comparison to Martian spectra.

  6. Current land bird distribution and trends in population abundance between 1982 and 2012 on Rota, Mariana Islands

    USGS Publications Warehouse

    Camp, Richard J.; Brinck, Kevin W.; Gorresen, P. Marcos; Amidon, Fred A.; Radley, Paul M.; Berkowitz, S. Paul; Banko, Paul C.

    2015-01-01

    The western Pacific island of Rota is the fourth largest human-inhabited island in the Mariana archipelago and designated an Endemic Bird Area. Between 1982 and 2012, 12 point-transect distance-sampling surveys were conducted to assess bird population status. Surveys did not consistently sample the entire island; thus, we used a ratio estimator to estimate bird abundances in strata not sampled during every survey. Trends in population size were reliably estimated for 11 of 13 bird species, and 7 species declined over the 30-y time series, including the island collared-dove Streptopelia bitorquata, white-throated ground-dove Gallicolumba xanthonura, Mariana fruit-dove Ptilinopus roseicapilla, collared kingfisher Todiramphus chloris orii, Micronesian myzomela Myzomela rubratra, black drongo Dicrurus macrocercus, and Mariana crow Corvus kubaryi. The endangered Mariana crow (x̄  =  81 birds, 95% CI 30–202) declined sharply to fewer than 200 individuals in 2012, down from 1,491 birds in 1982 (95% CI  =  815–3,115). Trends increased for white tern Gygis alba, rufous fantail Rhipidura rufifrons mariae, and Micronesian starling Aplonis opaca. Numbers of the endangered Rota white-eye Zosterops rotensis declined from 1982 to the late 1990s but returned to 1980s levels by 2012, resulting in an overall stable trend. Trends for the yellow bittern Ixobrychus sinensis were inconclusive. Eurasian tree sparrow Passer montanus trends were not assessed; however, their numbers in 1982 and 2012 were similar. Occupancy models of the 2012 survey data revealed general patterns of land cover use and detectability among 12 species that could be reliably modeled. Occupancy was not assessed for the Eurasian tree sparrow because of insufficient detections. Based on the 2012 survey, bird distribution and abundance across Rota revealed three general patterns: 1) range restriction, including Mariana crow, Rota white-eye, and Eurasian tree sparrow; 2) widespread distribution, low

  7. Effects of private-land use, livestock management, and human tolerance on diversity, distribution, and abundance of large african mammals.

    PubMed

    Kinnaird, Margaret F; O'brien, Timothy G

    2012-12-01

    Successful conservation of large terrestrial mammals (wildlife) on private lands requires that landowners be empowered to manage wildlife so that benefits outweigh the costs. Laikipia County, Kenya, is predominantly unfenced, and the land uses in the area allow wide-ranging wildlife to move freely between different management systems on private land. We used camera traps to sample large mammals associated with 4 different management systems (rhinoceros sanctuaries, no livestock; conservancies, intermediate stocking level; fenced ranches, high stocking level; and group ranches, high stocking level, no fencing, pastoralist clan ownership) to examine whether management and stocking levels affect wildlife. We deployed cameras at 522 locations across 8 properties from January 2008 through October 2010 and used the photographs taken during this period to estimate richness, occupancy, and relative abundance of species. Species richness was highest in conservancies and sanctuaries and lowest on fenced and group ranches. Occupancy estimates were, on average, 2 and 5 times higher in sanctuaries and conservancies as on fenced and group ranches, respectively. Nineteen species on fenced ranches and 25 species on group ranches were considered uncommon (occupancy < 0.1). The relative abundance of most species was highest or second highest in sanctuaries and conservancies. Lack of rights to manage and utilize wildlife and uncertain land tenure dampen many owners' incentives to tolerate wildlife. We suggest national conservation strategies consider landscape-level approaches to land-use planning that aim to increase conserved areas by providing landowners with incentives to tolerate wildlife. Possible incentives include improving access to ecotourism benefits, forging agreements to maintain wildlife habitat and corridors, resolving land-ownership conflicts, restoring degraded rangelands, expanding opportunities for grazing leases, and allowing direct benefits to landowners through

  8. Wide distribution of thermal brines along Median Tectonic Lines SW Japan: Their chemical nature and origin

    NASA Astrophysics Data System (ADS)

    Kazahaya, K.; Morikawa, N.; Yasuhara, M.; Tsukamoto, H.; Takahashi, H.; Sato, T.; Takahashi, M.; Ohwada, M.; Inamura, A.; Oyama, Y.

    2009-12-01

    Chemical and isotopic studies on groundwater and dissolved gases collected from wells and self-spouting springs in wide areas of SW Japan have been performed to investigate their nature, origin and chemical processes. We also try to classify the groundwater into 3 types; volcanic, non-volcanic but from deep-seated sources, and fossil seawater, and discuss genesis of deep-seated water comparing the spatial distribution of groundwater data with geological and tectonic settings and seismicity. According to the spatial variation of hydrogen and oxygen isotopic ratios of groundwater, oxygen-shifted water is found in wide area in SW Japan not only close to quaternary volcanoes but along the tectonic lines where low frequency seismic events occur. We found many oxygen-shifted waters along 1000 km length of Median Tectonic Line originally related to the water previously categorized as Arima-type thermal water. Arima-type water has more than two times Cl concentration than the present seawater and amounts of free CO2 gas. The isotopic composition of Arima-type water is very similar to that of magmatic gases from island arcs, suggesting that this water occur from dehydration of the subducting slab. To give the other supporting evidence, the flow rate of Arima-type water in various places has been hydrologically obtained and compared with the water circulation balance in the solid earth. The difference between the source and sink of water budget in the solid earth is estimated as 1.3-11x1014 g/yr (Ito et al., 1984), and we calculated that flow rate of 40-400 kg/sec in SW Japan area (1000 km wide) is missing. As of now, our observational results show 10 kg/sec in a limited area which is a summary of only 6 local places. So far we believe these flow rate values are in good agreement to assess the origin of Arima-type water. Co-occurrence of low-Q seismic events and brine water ascent may give another evidence of origin of low-Q quakes.

  9. Neutron Capture Rates near A=130 which Effect a Global Change to the r-Process Abundance Distribution

    SciTech Connect

    Surman, Rebecca; Beun, Joshua; Mclaughlin, Gail C; Hix, William Raphael

    2009-01-01

    We investigate the impact of neutron capture rates near the A=130 peak on the r-process abundance pattern. We show that these capture rates can alter the abundances of individual nuclear species, not only in the region of A=130 peak but also throughout the abundance pattern. We discuss in general the nonequilibrium processes that produce these abundance changes and determine which capture rates have the most significant impact.

  10. Mutation rates, spectra, and genome-wide distribution of spontaneous mutations in mismatch repair deficient yeast.

    PubMed

    Lang, Gregory I; Parsons, Lance; Gammie, Alison E

    2013-09-01

    DNA mismatch repair is a highly conserved DNA repair pathway. In humans, germline mutations in hMSH2 or hMLH1, key components of mismatch repair, have been associated with Lynch syndrome, a leading cause of inherited cancer mortality. Current estimates of the mutation rate and the mutational spectra in mismatch repair defective cells are primarily limited to a small number of individual reporter loci. Here we use the yeast Saccharomyces cerevisiae to generate a genome-wide view of the rates, spectra, and distribution of mutation in the absence of mismatch repair. We performed mutation accumulation assays and next generation sequencing on 19 strains, including 16 msh2 missense variants implicated in Lynch cancer syndrome. The mutation rate for DNA mismatch repair null strains was approximately 1 mutation per genome per generation, 225-fold greater than the wild-type rate. The mutations were distributed randomly throughout the genome, independent of replication timing. The mutation spectra included insertions/deletions at homopolymeric runs (87.7%) and at larger microsatellites (5.9%), as well as transitions (4.5%) and transversions (1.9%). Additionally, repeat regions with proximal repeats are more likely to be mutated. A bias toward deletions at homopolymers and insertions at (AT)n microsatellites suggests a different mechanism for mismatch generation at these sites. Interestingly, 5% of the single base pair substitutions might represent double-slippage events that occurred at the junction of immediately adjacent repeats, resulting in a shift in the repeat boundary. These data suggest a closer scrutiny of tumor suppressors with homopolymeric runs with proximal repeats as the potential drivers of oncogenesis in mismatch repair defective cells. PMID:23821616

  11. Abundance and distribution of radioelements in lunar terranes: Results of Chang'E-1 gamma ray spectrometer data

    NASA Astrophysics Data System (ADS)

    Chen, Jian; Ling, Zongcheng; Li, Bo; Zhang, Jiang; Sun, Lingzhi; Liu, Jianzhong

    2016-02-01

    The gamma ray spectrometer (GRS) onboard Chang'E-1 has acquired valuable datasets recording the gamma ray intensities from radioelements (Potassium (K), Thorium (Th) and Uranium (U), etc.) on lunar surface. We extracted the elemental concentrations from the GRS data with spectral fitting techniques and mapped the global absolute abundance of radioelements in terms of the ground truths from lunar samples and meteorites. The obtained global concentration maps of these radioelements indicate heterogeneous distribution among three major lunar crustal terranes (i.e., Procellarum KREEP Terrane (PKT), Feldspathic Highlands Terrane (FHT), and South Pole Aitken Terrane (SPAT)) in relation with their origin and distinct geologic history. The majority of radioelements are restricted in PKT, approving the scenario of KREEP (Potassium (K), rare earth elements (REE), Phosphorus (P)) residua concentrating under the Procellarum region. Moreover, we found the consistency of distribution for radioelements and basalts, concluding that the subsequent volcanism might be associated with local concentrations of radioelements in western Oceanus Procellarum and northwestern South Pole Aitken Basin. The prominent and asymmetric radioactive signatures were confirmed in SPAT comparing to FHT dominated by low level radioactivity, while the magnitudes are much lower than that of PKT, indicating a primary geochemical heterogeneity for the Moon.

  12. Variability of invertebrate abundance in drinking water distribution systems in the Netherlands in relation to biostability and sediment volumes.

    PubMed

    van Lieverloo, J Hein M; Hoogenboezem, Wim; Veenendaal, Gerrit; van der Kooij, Dick

    2012-10-15

    A survey of invertebrates in drinking water from treatment works, internal taps and hydrants on mains was carried out by almost all water companies in the Netherlands from September 1993 to August 1995. Aquatic sow bugs (Asellidae, 1-12 mm) and oligochaeta worms (Oligochaeta, 1-100 mm), both known to have caused rare though embarrassing consumer complaints, were found to form 98% of the mean biomass in water flushed from mains. Their numbers in the mains water ranged up to 1500 (mean 37) Asellidae m(-3) and up to 9900 (mean 135) Oligochaeta m(-3). Smaller crustaceans (0.5-2 mm) dominated the numbers in water from mains. e.g. water fleas (Cladocera and Copepoda up to 14,000 m(-3)). Common invertebrates in treated water and in tap water were Rotifera (<1 mm) and nematode worms (Nematoda, <2 mm). No Asellidae, large Oligochaeta (>5 mm) or other large invertebrates were found in 1560 samples of 200 l treated water or tap water. Large variations in invertebrate abundance were found within and between distribution systems. Of the variability of mean biomass in mains per system, 55%, 60% and 63% could statistically be explained by differences in the Biofilm Formation Rate, non-particulate organic matter and the permanganate index of the treated water of the treatment works respectively. A similar correlation was found between mean invertebrate biomass and mean sediment volumes in the distribution systems (R(2) = 52%). PMID:22840474

  13. Spatial Abundance and Distribution of Potential Microbes and Functional Genes Associated with Anaerobic Mineralization of Pentachlorophenol in a Cylindrical Reactor.

    PubMed

    Li, Zhi-Ling; Nan, Jun; Huang, Cong; Liang, Bin; Liu, Wen-Zong; Cheng, Hao-Yi; Zhang, Chunfang; Zhang, Dongdong; Kong, Deyong; Kanamaru, Kyoko; Kobayashi, Tetsuo; Wang, Ai-Jie; Katayama, Arata

    2016-01-01

    Functional interplays of microbial activity, genetic diversity and contaminant transformation are poorly understood in reactors for mineralizing halogenated aromatics anaerobically. Here, we investigated abundance and distribution of potential microbes and functional genes associated with pentachlorophenol (PCP) anaerobic mineralization in a continuous-flow cylindrical reactor (15 cm in length). PCP dechlorination and the metabolite (phenol) were observed at segments 0-8 cm from inlet, where key microbes, including potential reductive dechlorinators (Dehalobacter, Sulfurospirillum, Desulfitobacterium and Desulfovibrio spp.) and phenol degraders (Cryptanaerobacter and Syntrophus spp.), as well as putative functional genes, including putative chlorophenol reductive dehalogenase (cprA) and benzoyl-CoA reductase (bamB), were highly enriched simultaneously. Five types of putative cprAs, three types of putative bamBs and seven types of putative nitrogenase reductase (nifHs) were determined, with their copy numbers decreased gradually from inlet to outlet. Distribution of chemicals, bacteria and putative genes confirmed PCP dechlorination and phenol degradation accomplished in segments 0-5 cm and 0-8 cm, respectively, contributing to a high PCP mineralization rate of 3.86 μM d(-1). Through long-term incubation, dechlorination, phenol degradation and nitrogen fixation bacteria coexisted and functioned simultaneously near inlet (0-8 cm), verified the feasibility of anaerobic mineralization of halogenated aromatics in the compact reactor containing multiple functional microbes. PMID:26750760

  14. Preliminary results of fisheries investigation associated with Skylab-3. [remotely sensed distribution and abundance of gamefish in Gulf of Mexico

    NASA Technical Reports Server (NTRS)

    Savastano, K. J. (Principal Investigator); Pastula, E. J., Jr.; Woods, G.; Faller, K.

    1974-01-01

    The author has identified the following significant results. This investigation is to establish the feasibility of utilizing remotely sensed data acquired from aircraft and satellite platforms to provide information concerning the distribution and abundance of oceanic gamefish. Data from the test area in the northeastern Gulf of Mexico has made possible the identification of fisheries significant environmental parameters for white marlin. Predictive models based on catch data and surface truth information have been developed and have demonstrated potential for reducing search significantly by identifying areas which have a high probability of being productive. Three of the parameters utilized by the model, chlorophyll-a, sea surface temperature, and turbidity have been inferred from aircraft sensor data. Cloud cover and delayed receipt have inhibited the use of Skylab data. The first step toward establishing the feasibility of utilizing remotely sensed data to assess amd monitor the distribution of ocean gamefish has been taken with the successful identification of fisheries significant oceanographic parameters and the demonstration of the capability of measuring most of these parameters remotely.

  15. Spatial Abundance and Distribution of Potential Microbes and Functional Genes Associated with Anaerobic Mineralization of Pentachlorophenol in a Cylindrical Reactor

    NASA Astrophysics Data System (ADS)

    Li, Zhi-Ling; Nan, Jun; Huang, Cong; Liang, Bin; Liu, Wen-Zong; Cheng, Hao-Yi; Zhang, Chunfang; Zhang, Dongdong; Kong, Deyong; Kanamaru, Kyoko; Kobayashi, Tetsuo; Wang, Ai-Jie; Katayama, Arata

    2016-01-01

    Functional interplays of microbial activity, genetic diversity and contaminant transformation are poorly understood in reactors for mineralizing halogenated aromatics anaerobically. Here, we investigated abundance and distribution of potential microbes and functional genes associated with pentachlorophenol (PCP) anaerobic mineralization in a continuous-flow cylindrical reactor (15 cm in length). PCP dechlorination and the metabolite (phenol) were observed at segments 0-8 cm from inlet, where key microbes, including potential reductive dechlorinators (Dehalobacter, Sulfurospirillum, Desulfitobacterium and Desulfovibrio spp.) and phenol degraders (Cryptanaerobacter and Syntrophus spp.), as well as putative functional genes, including putative chlorophenol reductive dehalogenase (cprA) and benzoyl-CoA reductase (bamB), were highly enriched simultaneously. Five types of putative cprAs, three types of putative bamBs and seven types of putative nitrogenase reductase (nifHs) were determined, with their copy numbers decreased gradually from inlet to outlet. Distribution of chemicals, bacteria and putative genes confirmed PCP dechlorination and phenol degradation accomplished in segments 0-5 cm and 0-8 cm, respectively, contributing to a high PCP mineralization rate of 3.86 μM d-1. Through long-term incubation, dechlorination, phenol degradation and nitrogen fixation bacteria coexisted and functioned simultaneously near inlet (0-8 cm), verified the feasibility of anaerobic mineralization of halogenated aromatics in the compact reactor containing multiple functional microbes.

  16. Spatial Abundance and Distribution of Potential Microbes and Functional Genes Associated with Anaerobic Mineralization of Pentachlorophenol in a Cylindrical Reactor

    PubMed Central

    Li, Zhi-Ling; Nan, Jun; Huang, Cong; Liang, Bin; Liu, Wen-Zong; Cheng, Hao-Yi; Zhang, Chunfang; Zhang, Dongdong; Kong, Deyong; Kanamaru, Kyoko; Kobayashi, Tetsuo; Wang, Ai-Jie; Katayama, Arata

    2016-01-01

    Functional interplays of microbial activity, genetic diversity and contaminant transformation are poorly understood in reactors for mineralizing halogenated aromatics anaerobically. Here, we investigated abundance and distribution of potential microbes and functional genes associated with pentachlorophenol (PCP) anaerobic mineralization in a continuous-flow cylindrical reactor (15 cm in length). PCP dechlorination and the metabolite (phenol) were observed at segments 0–8 cm from inlet, where key microbes, including potential reductive dechlorinators (Dehalobacter, Sulfurospirillum, Desulfitobacterium and Desulfovibrio spp.) and phenol degraders (Cryptanaerobacter and Syntrophus spp.), as well as putative functional genes, including putative chlorophenol reductive dehalogenase (cprA) and benzoyl-CoA reductase (bamB), were highly enriched simultaneously. Five types of putative cprAs, three types of putative bamBs and seven types of putative nitrogenase reductase (nifHs) were determined, with their copy numbers decreased gradually from inlet to outlet. Distribution of chemicals, bacteria and putative genes confirmed PCP dechlorination and phenol degradation accomplished in segments 0–5 cm and 0–8 cm, respectively, contributing to a high PCP mineralization rate of 3.86 μM d−1. Through long-term incubation, dechlorination, phenol degradation and nitrogen fixation bacteria coexisted and functioned simultaneously near inlet (0–8 cm), verified the feasibility of anaerobic mineralization of halogenated aromatics in the compact reactor containing multiple functional microbes. PMID:26750760

  17. Changes in the geographical distribution and abundance of the tick Ixodes ricinus during the past 30 years in Sweden

    PubMed Central

    2012-01-01

    Background Ixodes ricinus is the main vector in Europe of human-pathogenic Lyme borreliosis (LB) spirochaetes, the tick-borne encephalitis virus (TBEV) and other pathogens of humans and domesticated mammals. The results of a previous 1994 questionnaire, directed at people living in Central and North Sweden (Svealand and Norrland) and aiming to gather information about tick exposure for humans and domestic animals, suggested that Ixodes ricinus ticks had become more widespread in Central Sweden and the southern part of North Sweden from the early 1980s to the early 1990s. To investigate whether the expansion of the tick's northern geographical range and the increasing abundance of ticks in Sweden were still occurring, in 2009 we performed a follow-up survey 16 years after the initial study. Methods A questionnaire similar to the one used in the 1994 study was published in Swedish magazines aimed at dog owners, home owners, and hunters. The questionnaire was published together with a popular science article about the tick's biology and role as a pathogen vector in Sweden. The magazines were selected to get information from people familiar with ticks and who spend time in areas where ticks might be present. Results Analyses of data from both surveys revealed that during the near 30-year period from the early 1980s to 2008, I. ricinus has expanded its distribution range northwards. In the early 1990s ticks were found in new areas along the northern coastline of the Baltic Sea, while in the 2009 study, ticks were reported for the first time from many locations in North Sweden. This included locations as far north as 66°N and places in the interior part of North Sweden. During this 16-year period the tick's range in Sweden was estimated to have increased by 9.9%. Most of the range expansion occurred in North Sweden (north of 60°N) where the tick's coverage area doubled from 12.5% in the early 1990s to 26.8% in 2008. Moreover, according to the respondents, the abundance

  18. Yellow-Billed Cuckoo Distribution, Abundance, and Habitat Use Along the Lower Colorado and Tributaries, 2006 Annual Report

    USGS Publications Warehouse

    Johnson, Matthew J.; Holmes, Jennifer A.; Calvo, Christopher; Samuels, Ivan; Krantz, Stefani; Sogge, Mark K.

    2007-01-01

    Executive Summary This 2006 annual report details the first season of a 2-year study documenting western yellow-billed cuckoo (Coccyzus americanus occidentalis) distribution, abundance, and habitat use throughout the Lower Colorado River Multi-Species Conservation Plan boundary area. We conducted cuckoo surveys at 55 sites within 17 areas, between 11 June and 13 September. The 243 visits across all sites yielded 180 yellow-billed cuckoo detections. Cuckoos were detected at 27 of the 55 sites, primarily at the Bill Williams River National Wildlife Refuge AZ sites (n = 117 detections) and the Grand Canyon National Park-Lake Mead National Recreation Area AZ delta sites (n = 29 detections). There were also cuckoos at the Gila River-Colorado River Confluence, AZ (n = 9), Overton Wildlife Management, NV area (n = 7), and Limitrophe Division North, AZ (n = 6); however, at these sites the numbers were much lower and very few of these birds were considered to be paired or breeding. The greatest number of detections (n = 79) occurred during the second survey period (3-23 July). In 2006, we confirmed five breeding events, including one nesting observation and sightings of four juveniles; all confirmed breeding was at the Bill Williams River NWR and Grand Canyon NP-Lake Mead NRA delta sites. The breeding status of most of our detections were unknown, however, we observed 17 adult cuckoos carrying nest material or food and 40 cuckoo detections were detected while counter-calling occurred in same area during repeated surveys. We used playback recordings to survey for western yellow-billed cuckoos. Compared to simple point counts or surveys, this method increases the number of detections of this secretive, elusive species. It has long been suspected that cuckoos have a fairly low response rate, and that the standard survey method of using playback recordings may fail to detect all birds present in an area. In 2006, we found that the majority (72%) of cuckoo detections were

  19. Distribution of microRNA co-targets exhibit universality across a wide class of species

    NASA Astrophysics Data System (ADS)

    Basu, Mahashweta; Bhattacharyya, Nitai P.; Mohanty, P. K.

    2014-01-01

    MicroRNAs (miRNAs) are small non-coding RNAs which regulate gene expression by binding to the 3' UTR of the corresponding messenger RNAs. We construct miRNA co-target networks for a wide class of species (22 in total) using a target prediction database, MicroCosm Targets. For each species, miRNA pairs having one or more common target genes are connected and the number of co-targets are assigned as the weight of these links. We show that the link-weight distributions of all the species collapse remarkably onto each other when scaled suitably —the scale-factor turns out to be a measure of complexity of the species. A simple model, where targets are chosen randomly by miRNAs, could provide the correct scaling function and suggest that the increase of species complexity is related to the increase of the fraction of genes typically targeted by their miRNAs.

  20. A Global Calibration Method for Widely Distributed Cameras Based on Vanishing Features

    PubMed Central

    Wu, Xiaolong; Wu, Sentang; Xing, Zhihui; Jia, Xiang

    2016-01-01

    This paper presents a global calibration method for widely distributed vision sensors in ring-topologies. Planar target with two mutually orthogonal groups of parallel lines is needed for each camera. Firstly, the relative pose of each camera and its corresponding target is found from the vanishing points and lines. Next, an auxiliary camera is used to find the relative poses between neighboring pairs of calibration targets. Then the relative pose from each target to the reference target is initialized by the chain of transformations, followed by nonlinear optimization based on the constraint of ring-topologies. Lastly, the relative poses between the cameras are found from the relative poses of calibration targets. Synthetic data, simulation images and real experiments all demonstrate that the proposed method is reliable and accurate. The accumulated error due to multiple coordinate transformations can be adjusted effectively by the proposed method. In real experiment, eight targets are located in an area about 1200 mm × 1200 mm. The accuracy of the proposed method is about 0.465 mm when the times of coordinate transformations reach a maximum. The proposed method is simple and can be applied to different camera configurations. PMID:27338386

  1. Probabilistic Classification Using Elemental Abundance Distributions and Lossless Image Compression in Apollo 17 Lunar Dust Samples from Mare Serenitatis

    NASA Technical Reports Server (NTRS)

    Storrie-Lombardi, Michael C.; Hoover, Richard B.; Abbas, Mian; Jerman, Gregory; Coston, James; Fisk, Martin

    2006-01-01

    We have previously outlined a strategy for the detection of fossils [Storrie-Lombardi and Hoover, 2004] and extant microbial life [Storrie-Lombaudi and Hoover, 20051 during robotic missions to Mars using co-registered structural and chemical signatures. Data inputs included image lossless compression indices to estimate relative textural complexity and elemental abundance distributions. Two exploratory classification algorithms (principal component analysis and hierarchical cluster analysis) provide an initial tentative classification of all targets. Nonlinear stochastic neural networks are then trained to produce a Bayesian estimate of algorithm classification accuracy. The strategy previously has been successful in distinguishing regions of biotic and abiotic alteration of basalt glass from unaltered samples. [Storrie-Lombardi and Fisk, 2004; Storrie-Lombardi and Fisk, 2004] Such investigations of abiotic versus biotic alteration of terrestrial mineralogy on Earth are compromised by .the difficulty finding mineralogy completely unaffected by the ubiquitous presence of microbial life on the planet. The renewed interest in lunar exploration offers an opportunity to investigate geological materials that may exhibit signs of aqueous alteration, but are highly unlikely to contain contaminating biological weathering signatures. We here present an extension of our earlier data set to include lunar dust samples obtained during the Apollo 17 mission. Apollo 17 landed in the Taurus-Littrow Valley in Mare Serenitatis. Most of the rock samples from this region of the lunar highlands are basalts comprised primarily of plagioclase and pyroxene and selected examples of orange and black volcanic glass. SEM images and elemental abundances (C6, N7, O8, Na11, Mg12, Al13, Si14, P15, S16, Cll7, K19, Ca20, Fe26) for a series of targets in the lunar dust samples are compared to the extant cyanobacteria, fossil trilobites, Orgueil meteorite, and terrestrial basalt targets previously

  2. River Temperature Dynamics and Habitat Characteristics as Predictors of Salmonid Abundance using Fiber-Optic Distributed Temperature Sensing

    NASA Astrophysics Data System (ADS)

    Gryczkowski, L.; Gallion, D.; Haeseker, S.; Bower, R.; Collier, M.; Selker, J. S.; Scherberg, J.; Henry, R.

    2011-12-01

    Salmonids require cool water for all life stages, including spawning and growth. Excessive water temperature causes reduced growth and increased disease and mortality. During the summer, salmonids seek local zones of cooler water as a refuge from elevated temperatures. They also prefer specific habitat features such as boulders and overhanging vegetation. The purpose of this study is to determine whether temperature dynamics or commonly measured fish habitat metrics best explain salmonid abundance. The study site was a 2-kilometer reach of the Walla Walla River near Milton-Freewater, OR, USA, which provides habitat for the salmonids chinook salmon (Oncorhynchus tshawytscha), steelhead/rainbow trout (Oncorhynchus mykiss), mountain whitefish (Prosopium williamsoni), and the endangered bull trout (Salvelinus confluentus). The Walla Walla River is listed as an impaired water body under section 303(d) of the Clean Water Act due to temperature. The associated total maximum daily load (TMDL) calls for temperatures to be below 18 °C at all times for salmonid rearing and migration; however, river temperatures surpassed 24 °C in parts of the study reach in 2009. The two largest factors contributing to the warmer water are reduced riparian vegetation, which decreases shading and increases direct solar radiation, and decreased summer flows caused by diversions and irrigation for agriculture. Fiber-optic distributed temperature sensing has emerged as a unique and powerful tool for ecological applications because of its high spatial and temporal resolution. In this study, meter-scale temperature measurements were obtained at 15-minute intervals along the length of the study reach, allowing for the detection and quantification of cold water inflows during the summer of 2009. The cold water inflows were classified as groundwater or hyporheic sources based on the diurnal temperature patterns. Snorkel surveys were conducted in mid-July and mid-August, 2009 to enumerate salmonid

  3. Patterns of distribution and abundance of the stalked barnacle (Pollicipes pollicipes) in the central and southwest coast of continental Portugal

    NASA Astrophysics Data System (ADS)

    Sousa, Alina; Jacinto, David; Penteado, Nélia; Martins, Pedro; Fernandes, Joana; Silva, Teresa; Castro, João J.; Cruz, Teresa

    2013-10-01

    The stalked barnacle Pollicipes pollicipes is a cirriped crustacean that lives on very exposed rocky shores. This barnacle is the most important economical resource on intertidal rocky shores of continental Portugal. It is highly prized as food and heavily exploited (professional and recreational fishery), but fishery data are scarce and do not estimate the real pressure upon this resource. Despite its socio-economic interest, specific regulations on this fishery are recent and different along the Portuguese coast. Four regions with different regulation can be identified: the marine reserve “Reserva Natural das Berlengas” (RNB) and the marine park “Parque Marinho Prof. Luiz Saldanha” (PMLS) (both in central Portugal); the natural park located in SW Portugal (“Parque Natural do Sudoeste Alentejano e Costa Vicentina”, PNSACV); and the rest of the coast. The main objective of the present study was to study the spatial patterns of percentage cover, biomass, density and size structure of P. pollicipes in areas with different exploitation regimes, including harvested areas and no-take areas. Additionally, variability between mid shore and low shore barnacles was also analysed. Seven areas were sampled with a variable number of sites (a total of 24) randomly sampled in each area during 2011. Photographs and image analysis (percentage cover) and destructive sampling (density, biomass and size) were used. In general, percentage cover, biomass and density were higher in mid shore when compared to low shore, namely in harvested areas. Low shore barnacles had a higher proportion of adults with moderate and high commercial value, while juveniles were relatively more abundant at mid shore. There were no consistent differences in the patterns of distribution and abundance of P. pollicipes among areas subject to different exploitation regimes. The most different area was the harvested area by professional fishers in RNB, where the highest biomass within the study was

  4. Determing Lamprey Species Composition, Larval Distribution, and Adult Abundance in the Deschutes River, Oregon, Subbasin; 2005-2006 Annual Report.

    SciTech Connect

    Graham, Jennifer C.; Brun, Christopher V.

    2006-05-01

    Information about lamprey species composition, distribution, life history, abundance, habitat requirements, and exploitation in the lower Deschutes River Subbasin is extremely limited. During 2002, we began a multi-year study to assess the status of lamprey in the Deschutes River subbasin. The objectives of this project are to determine ammocoete (larval lamprey) distribution and associated habitats; Lampretra species composition; numbers of emigrants; adult escapement and harvest rates at Sherars Falls. This report describes the preliminary results of data collected during 2005. We continued documenting ammocoete (larval) habitat selection by surveying four perennial eastside tributaries to the Deschutes River (Warm Springs River, Badger, Beaver and Shitike creeks) within the known ammocoete distribution. The results of 2003-2005 sampling indicate that positive relationships exist between: presence of wood (P = < 0.001), depositional area (P = < 0.001), flow (P = < 0.001), and fine substrate (P = < 0.001). Out-migrants numbers were not estimated during 2005 due to our inability to recapture marked larvae. In Shitike Creek, ammocoete and microphthalmia out-migration peaked during November 2005. In the Warm Spring River, out-migration peaked for ammocoetes in April 2006 and December 2005 for microphthalmia. Samples of ammocoetes from each stream were retained in a permanent collection of future analysis. An escapement estimate was generated for adult Pacific lamprey in the lower Deschutes River using a two event mark-recapture experiment during run year 2005. A modified Peterson model was used to estimate the adult population of Pacific lamprey at 3,895 with an estimated escapement of 2,881 during 2005 (95% CI= 2,847; M = 143; C = 1,027 R = 37). A tribal creel was also conducted from mid-June through August. We estimated tribal harvest to be approximately 1,015 adult lamprey during 2005 (95% CI= +/- 74).

  5. The Role of CAX1 and CAX3 in Elemental Distribution and Abundance in Arabidopsis Seed1[W][OA

    PubMed Central

    Punshon, Tracy; Hirschi, Kendal; Yang, Jian; Lanzirotti, Antonio; Lai, Barry; Guerinot, Mary Lou

    2012-01-01

    The ability to alter nutrient partitioning within plants cells is poorly understood. In Arabidopsis (Arabidopsis thaliana), a family of endomembrane cation exchangers (CAXs) transports Ca2+ and other cations. However, experiments have not focused on how the distribution and partitioning of calcium (Ca) and other elements within seeds are altered by perturbed CAX activity. Here, we investigate Ca distribution and abundance in Arabidopsis seed from cax1 and cax3 loss-of-function lines and lines expressing deregulated CAX1 using synchrotron x-ray fluorescence microscopy. We conducted 7- to 10-μm resolution in vivo x-ray microtomography on dry mature seed and 0.2-μm resolution x-ray microscopy on embryos from lines overexpressing deregulated CAX1 (35S-sCAX1) and cax1cax3 double mutants only. Tomograms showed an increased concentration of Ca in both the seed coat and the embryo in cax1, cax3, and cax1cax3 lines compared with the wild type. High-resolution elemental images of the mutants showed that perturbed CAX activity altered Ca partitioning within cells, reducing Ca partitioning into organelles and/or increasing Ca in the cytosol and abolishing tissue-level Ca gradients. In comparison with traditional volume-averaged metal analysis, which confirmed subtle changes in seed elemental composition, the collection of spatially resolved data at varying resolutions provides insight into the impact of altered CAX activity on seed metal distribution and indicates a cell type-specific function of CAX1 and CAX3 in partitioning Ca into organelles. This work highlights a powerful technology for inferring transport function and quantifying nutrient changes. PMID:22086421

  6. Abundance and distribution of Tursiops truncatus in the Western Mediterranean Sea: an assessment towards the Marine Strategy Framework Directive requirements.

    PubMed

    Lauriano, Giancarlo; Pierantonio, Nino; Donovan, Greg; Panigada, Simone

    2014-09-01

    The Mediterranean Sea common bottlenose dolphin population has been assessed as Vulnerable according to the IUCN Red List Criteria. The species is also included in several International Agreements, European Union Regulations and Directives. Amongst them, a strict protection and identification of special conservation areas are requested by the EU Habitats Directive. Despite direct takes, by-catch, chemical and acoustic pollution, and prey depletion, general habitat degradation and fragmentation have been indicated as detrimental for the species, the degree to which these threats pose population risk is still largely unknown. At present it is thus not possible to depict the actual status of the population and to assess prospective trends. To address this gap in the current knowledge, line transect distance sampling aerial surveys were conducted in a wide portion of the Western Mediterranean Sea between the summer of 2010 and winter 2011. A total of 165 parallel transects equally spaced at 15 km were designed providing homogeneous coverage probability. Overall, 21,090 km were flown on effort and 16 bottlenose dolphin sightings were recorded and used for the analysis. The surface abundance and density estimates resulted in 1676 animals (CV = 38.25; 95% CI = 804-3492) with a density of 0.005 (CV = 38.25%). These results represent the first ever estimates for the common bottlenose dolphin over a wide portion of the Western Mediterranean Sea Subregion, with the potential to be useful baseline data to inform conservation. Specifically, they could be used as indicators under the Marine Strategy Framework Directive requirements, in conjunction with other study methods. PMID:24784442

  7. Distribution and seasonal abundance of trematode parasites (Trematoda: Allocreadiidae: Crepidostomum spp.) in burrowing mayfly nymphs (Ephemeroptera: Ephemeridae: Hexagenia spp.) from connecting rivers of the Laurentian Great Lakes

    USGS Publications Warehouse

    Schloesser, Don W.

    2005-01-01

    Burrowing-mayfly nymphs such as Hexagenia spp. have been used extensively in North America and Europe as a biomonitoring tool to indicate mesotrophic water quality, yet infestation by associated parasites has not been well documented. We performed laboratory analysis of archived samples of Hexagenia spp. nymphs collected in 1985 and 1986 to provide base-line data on the distribution (1985) and seasonal infestation (1986) of the trematode parasite Crepidostomum spp. in Hexagenia spp. nymphs in connecting rivers between Lakes Superior and Erie of the Laurentian Great Lakes. In May and June 1985, frequency of occurrence of metacercariae was widely distributed throughout the connecting rivers (63% of 203 stations with nymphs), except in areas where nymph densities were relatively low (i.e.,a?Y69 nymphs/mA?). Distribution was probably underestimated in the present study because of low probability (mean = 31%, range = 0-57%) of detecting infestation in a small number of collected nymphs (a??10) at nymph densities a??69/mA?. In 1986, seasonal infestation between April and October occurred in 3.3% (627) of 18696 nymphs. Overall prevalence, mean intensity, and mean abundance of parasites at one station in the St. Marys River indicate parasite transmission occurred between June and September. This period of transmission is dependent on the life-cycle of the parasite. In addition, the life-cycle of Hexagenia spp. determines which annual cohort of nymphs is infested and therefore, the duration of infestation. Although, no impacts of infestation on Hexagenia spp. nymphs were observed in the present study, infestation intensities were high enough (a?Y25 metacercariae per nymph) at one station in the St. Marys River to potentially cause tissue damage in a high proportion (53%) of infested nymphs.

  8. Remote sensing data to classify functional groups of vegetation and their distribution and abundance in a semiarid mountain watershed, Idaho, USA

    NASA Astrophysics Data System (ADS)

    Loughridge, R. E.; Benner, S. G.; McNamara, J. P.; Flores, A. N.

    2012-12-01

    In water-limited montane ecosystems, topography is a significant driver of energy balance and soil moisture and therefore governs the distribution and abundance of terrestrial vegetation. Few studies have made a concerted effort to quantify spatial patterns in vegetation along physiographic gradients that control microclimate such as slope, elevation, and aspect. Furthermore, spectral mixing of different vegetation species within individual visible and near-infrared remote sensing pixels makes it difficult to constrain the temporal growth and senescence of individual plant functional types. We report on a study that seeks to understand the interacting roles of topography, soil moisture, and solar radiation on the distribution of different plant functional types within the Dry Creek Experimental Watershed (DCEW). Boise State University maintains the 27 km2 watershed which is located in the Boise Front Mountains of southwest Idaho. It is qualitatively observed in DCEW that low elevations are dominated by sage-steppe ecosystems and high elevations transition to conifer forests. It is also observed that aspect has a major control in which sage-steppe is evident at high elevations on south facing slopes conversely from north facing slopes. To quantify these trends we measured percent ground cover of functional groups (i.e. forbs, grass, shrubs, etc.) at 77 sites within DCEW spanning a large gradient in the controlling biophysiographic variables. In addition, vegetation water content (VWC) and spectral reflectance from the 325 to 1075 nm wavelengths was collected for specific vegetation types at eight permanent soil moisture monitoring sites contained in DCEW throughout the 2012 green-up/senescence transition. To develop a watershed-wide classification we built a supervised multilayer perceptron (MLP) backpropagating artificial neural network (ANN) using temporal Landsat 5 images to classify 4 major groups: sage-steppe, Douglas fir, ponderosa pine, and deciduous trees

  9. Basin-wide distribution of phytoplankton lipids in the South China Sea during intermonsoon seasons: Influence by nutrient and physical dynamics

    NASA Astrophysics Data System (ADS)

    Dong, Liang; Li, Li; Li, Qianyu; Liu, Jie; Chen, Yuxing; He, Juan; Wang, Hui

    2015-12-01

    Four algal biomarkers, brassicasterol, C30-diol/keto-ol, dinosterol and C37-alkenone, representing diatoms, estigmatophytes, dinoflagellates and coccolithophorids, respectively, were detected in samples collected during two South China Sea cruises to study the modern phytoplankton community structure in the region. For the first time, the basin-wide distribution of these phytoplankton algal biomarkers in the sea surface water during two intermonsoon seasons (spring 2010 and autumn 2011) is documented and charted. Generally, the abundance of the biomass is higher in spring than autumn, with high productivity mostly in the regions of Pearl River estuary, off Palawan and around the Luzon Strait, showing the abundance order: diatoms>estigmatophytes>dinoflagellates>coccolithophorids. We run both redundancy analysis (RDA) and SPSS correlation analysis to interpret the relationship between individual groups and environmental variables. The results indicate that temperature and salinity play a dominant role in controlling the distribution of phytoplankton in these intermonsoon seasons, followed by nitrate playing a secondary role. Our biomarker survey provides important reference data for interpreting paleo-productivity in the geological records in the SCS.

  10. Chemical Abundances of Symbiotic Giants

    NASA Astrophysics Data System (ADS)

    Gałan, C.; Mikołajewska, J.; Hinkle, K. H.; Joyce, R. R.

    2015-12-01

    High resolution (R ˜ 50000), near-IR spectra were used to measure photospheric abundances of CNO and elements around the iron peak for 24 symbiotic giants. Spectrum synthesis was employed using local thermal equilibrium and hydrostatic model atmospheres. The metallicities are distributed in a wide range with maximum around [Fe/H] ˜-0.4 - - 0.3 dex. Enrichment in 14N indicates that all the sample giants have experienced the first dredge-up. The relative abundance of [Ti/Fe] is generally large in red symbiotic systems.

  11. A nonpyrrolysine member of the widely distributed trimethylamine methyltransferase family is a glycine betaine methyltransferase

    PubMed Central

    Ticak, Tomislav; Kountz, Duncan J.; Girosky, Kimberly E.; Krzycki, Joseph A.; Ferguson, Donald J.

    2014-01-01

    COG5598 comprises a large number of proteins related to MttB, the trimethylamine:corrinoid methyltransferase. MttB has a genetically encoded pyrrolysine residue proposed essential for catalysis. MttB is the only known trimethylamine methyltransferase, yet the great majority of members of COG5598 lack pyrrolysine, leaving the activity of these proteins an open question. Here, we describe the function of one of the nonpyrrolysine members of this large protein family. Three nonpyrrolysine MttB homologs are encoded in Desulfitobacterium hafniense, a Gram-positive strict anaerobe present in both the environment and human intestine. D. hafniense was found capable of growth on glycine betaine with electron acceptors such as nitrate or fumarate, producing dimethylglycine and CO2 as products. Examination of the genome revealed genes for tetrahydrofolate-linked oxidation of a methyl group originating from a methylated corrinoid protein, but no obvious means to carry out corrinoid methylation with glycine betaine. DSY3156, encoding one of the nonpyrrolysine MttB homologs, was up-regulated during growth on glycine betaine. The recombinant DSY3156 protein converts glycine betaine and cob(I)alamin to dimethylglycine and methylcobalamin. To our knowledge, DSY3156 is the first glycine betaine:corrinoid methyltransferase described, and a designation of MtgB is proposed. In addition, DSY3157, an adjacently encoded protein, was shown to be a methylcobalamin:tetrahydrofolate methyltransferase and is designated MtgA. Homologs of MtgB are widely distributed, especially in marine bacterioplankton and nitrogen-fixing plant symbionts. They are also found in multiple members of the human microbiome, and may play a beneficial role in trimethylamine homeostasis, which in recent years has been directly tied to human cardiovascular health. PMID:25313086

  12. Widely tunable Sampled Grating Distributed Bragg Reflector Quantum Cascade laser for gas spectroscopy applications

    NASA Astrophysics Data System (ADS)

    Diba, Abdou Salam

    Since the advent of semiconductor lasers, the development of tunable laser sources has been subject of many efforts in industry and academia arenas. This interest towards broadly tunable lasers is mainly due to the great promise they have in many applications ranging from telecommunication, to environmental science and homeland security, just to name a few. After the first demonstration of quantum cascade laser (QCL) in the early nineties, QCL has experienced a rapid development, so much so that QCLs are now the most reliable and efficient laser source in the Mid-IR range covering between 3 microm to 30 microm region of the electromagnetic spectrum. QCLs have almost all the desirable characteristics of a laser for spectroscopy applications such as narrow spectral linewidth ideal for high selectivity measurement, high power enabling high sensitivity sensing and more importantly they emit in the finger-print region of most of the trace gases and large molecules. The need for widely tunable QCLs is now more pressing than ever before. A single mode quantum cascade laser (QCL) such as a distributed feedback (DFB) QCL, is an ideal light source for gas sensing in the MIR wavelength range. Despite their performance and reliability, DFB QCLs are limited by their relatively narrow wavelength tuning range determined by the thermal rollover of the laser. An external cavity (EC) QCL, on the other hand, is a widely tunable laser source, and so far is the choice mid-infrared single frequency light sources for detecting multiple species/large molecules. However, EC QCLs can be complex, bulky and expensive. In the quest for finding alternative broadly wavelength tunable sources in the mid-infrared, many monolithic tunable QCLs are recently proposed and fabricated, including SG-DBR, DFB-Arrays, Slot-hole etc. and they are all of potentially of interest as a candidate for multi-gas sensing and monitoring applications, due to their large tuning range (>50 cm-1), and potentially low

  13. Environmental Survey Report for ORNL: Small Mammal Abundance and Distribution Survey Oak Ridge National Environmental Research Park 2009 - 2010

    SciTech Connect

    Giffen, Neil R; Reasor, R. Scott; Campbell, Claire L.

    2009-12-01

    This report summarizes a 1-year small mammal biodiversity survey conducted on the Oak Ridge National Environmental Research Park (OR Research Park). The task was implemented through the Oak Ridge National Laboratory (ORNL) Natural Resources Management Program and included researchers from the ORNL Environmental Sciences Division, interns in the Oak Ridge Institute for Science and Education Higher Education Research Experiences Program, and ORNL Environmental Protection Services staff. Eight sites were surveyed reservation wide. The survey was conducted in an effort to determine species abundance and diversity of small mammal populations throughout the reservation and to continue the historical inventory of small mammal presence for biodiversity records. This data collection effort was in support of the approved Wildlife Management Plan for the Oak Ridge Reservation, a major goal of which is to maintain and enhance wildlife biodiversity on the Reservation. Three of the sites (Poplar Creek, McNew Hollow, and Deer Check Station Field) were previously surveyed during a major natural resources inventory conducted in 1996. Five new sites were included in this study: Bearden Creek, Rainy Knob (Natural Area 21), Gum Hollow, White Oak Creek and Melton Branch. The 2009-2010 small mammal surveys were conducted from June 2009 to July 2010 on the Oak Ridge National Environmental Research Park (OR Research Park). The survey had two main goals: (1) to determine species abundance and diversity and (2) to update historical records on the OR Research Park. The park is located on the Department of Energy-owned Oak Ridge Reservation, which encompasses 13,580 ha. The primary focus of the study was riparian zones. In addition to small mammal sampling, vegetation and coarse woody debris samples were taken at certain sites to determine any correlations between habitat and species presence. During the survey all specimens were captured and released using live trapping techniques including

  14. Sea otter abundance, distribution, and pup production in Prince William Sound following the Exxon Valdez oil spill

    SciTech Connect

    Johnson, C.B.; Garshelis, D.L.

    1995-12-31

    The authors investigated effects of the 1989 Exxon Valdez oil spill on the abundance, distribution, and pup production of sea otters (Enhydra lutris) in prince William Sound (PWS) by comparing counts made during 1990 and 1991 with counts made by researchers 5--12 years before the spill. The authors observed no evidence of avoidance or attraction to spill-affected shorelines 1--2 years after the spill. Despite a substantial loss of sea otters immediately following the spill, the authors counted fewer otters than prespill investigators at only one of three heavily oiled islands, and from 1990 to 1991 the counts at this one site increased to a level equivalent to the latest (1985) prespill count. The authors followed the methods of prespill investigators and found close agreement between the counts of otters and those of two other concurrent investigations using the same survey technique. This agreement among counts, and the involvement in counts made prespill, suggested that inter-observer variability could not explain the unexpected high counts at oiled sites. 52 refs., 18 figs., 5 tabs.

  15. [Distribution and abundance of Katsuwonus pelamis larvae (Perciformes: Scombridae) in the Gulf of Mexico, 1982-1992].

    PubMed

    Guevara-Rascado, Ma de Lourdes; Cerecedo-Escudero, José Luis; Sánchez-Regalado, Ramón

    2008-09-01

    The epipelagic fish known as skipjack (Katsuwonus pelamis) is considered inside the "little tuna" group. The species is distributed in tropical and subtropical waters worldwide. Despite its fisheries importance in Mexico, there is little knowledge about the species in the region. The information from 18 oceanographic cruises inside the Mexican exclusive economic zone in the Gulf of Mexico and Caribbean Sea, was analyzed for the period 1982 to 1992. Plankton was collected in a paired 60 cm mouth bongo net sampler with 0.333 mm mesh nets in oblique tows. The maximum abundance was in spring and summer; 1986 had the largest population (4 881.8544 X 10(9) larvae) and 1983 the lowest density (566.3748 X 10(9)). The skipjack has suitable conditions for reproduction in this area, and the southwestern region is the most productive. The spawning was greater in the summer. The annual biomass was estimated in 2 513 to 21 659 tons, the high value corresponded to 1986, with potential yields between 7 472 and 10 071 tons. A local fishery seems viable but needs further evidence. PMID:19419048

  16. MULTI-ELEMENT ABUNDANCE MEASUREMENTS FROM MEDIUM-RESOLUTION SPECTRA. III. METALLICITY DISTRIBUTIONS OF MILKY WAY DWARF SATELLITE GALAXIES

    SciTech Connect

    Kirby, Evan N.; Cohen, Judith G.; Lanfranchi, Gustavo A.; Simon, Joshua D.; Guhathakurta, Puragra

    2011-02-01

    We present metallicity distribution functions (MDFs) for the central regions of eight dwarf satellite galaxies of the Milky Way: Fornax, Leo I and II, Sculptor, Sextans, Draco, Canes Venatici I, and Ursa Minor. We use the published catalog of abundance measurements from the previous paper in this series. The measurements are based on spectral synthesis of iron absorption lines. For each MDF, we determine maximum likelihood fits for Leaky Box, Pre-Enriched, and Extra Gas (wherein the gas supply available for star formation increases before it decreases to zero) analytic models of chemical evolution. Although the models are too simplistic to describe any MDF in detail, a Leaky Box starting from zero metallicity gas fits none of the galaxies except Canes Venatici I well. The MDFs of some galaxies, particularly the more luminous ones, strongly prefer the Extra Gas Model to the other models. Only for Canes Venatici I does the Pre-Enriched Model fit significantly better than the Extra Gas Model. The best-fit effective yields of the less luminous half of our galaxy sample do not exceed 0.02 Z{sub sun}, indicating that gas outflow is important in the chemical evolution of the less luminous galaxies. We surmise that the ratio of the importance of gas infall to gas outflow increases with galaxy luminosity. Strong correlations of average [Fe/H] and metallicity spread with luminosity support this hypothesis.

  17. Effects of irradiance on growth and winter bud production by Vallisneria americana and consequences to its abundance and distribution

    USGS Publications Warehouse

    Korschgen, Carl E.; Green, W.L.; Kenow, Kevin P.

    1997-01-01

    Number, total biomass, and individual mass of winter buds of Vallisneria americana was significantly related to the depth of the 1% of surface irradiance (Z) and the photosynthetic photon irradiance calculated for each shading treatment imposed during this study. Between the range of 23.8 and 111.2 cm depth for the 1% Z, total biomass of winterbuds produced ranged from 0.63 to 0.01 g, counts ranged from 3.5 to 0.1, and mass of individual winterbuds ranged from 0.18 to 0.04 g. Total biomass of winter buds produced was reduced when plants were exposed to a 14-day period without irradiance during the middle of the growing season. Applying the results of the culture experiments to conditions found in Navigation Pool 8 of the Upper Mississippi River suggests that irradiance may indeed limit the distribution and abundance of Vallisneria americana by reducing the number and size of winter buds. (C) 1997 Elsevier Science B.V.

  18. The surface magnetic field and chemical abundance distributions of the B2V helium-strong star HD 184927

    NASA Astrophysics Data System (ADS)

    Yakunin, I.; Wade, G.; Bohlender, D.; Kochukhov, O.; Marcolino, W.; Shultz, M.; Monin, D.; Grunhut, J.; Sitnova, T.; Tsymbal, V.; MiMeS Collaboration

    2015-02-01

    A new time series of high-resolution Stokes I and V spectra of the magnetic B2V star HD 184927 has been obtained in the context of the Magnetism in Massive Stars Large Program with an Echelle SpectroPolarimetric Device for the Observation of Stars (ESPaDOnS) spectropolarimeter at the Canada-France-Hawaii Telescope and dimaPol liquid crystal spectropolarimeter at 1.8-m telescope of Dominion Astrophysical Observatory. We model the optical and UV spectrum obtained from the International Ultraviolet Explorer (IUE) archive to infer the stellar physical parameters. Using magnetic field measurements, we derive an improved rotational period of 9.531 02 ± 0.0007 d. We infer the longitudinal magnetic field from lines of H, He, and various metals, revealing large differences between the apparent field strength variations determined from different elements. Magnetic Doppler Imaging using He and O lines yields strongly non-uniform surface distributions of these elements. We demonstrate that the diversity of longitudinal field variations can be understood as due to the combination of element-specific surface abundance distributions in combination with a surface magnetic field that is comprised of dipolar and quadrupolar components. We have reanalysed IUE high-resolution spectra, confirming strong modulation of wind-sensitive C IV and S IV resonance lines. However, we are unable to detect any modulation of the Hα profile attributable to a stellar magnetosphere. We conclude that HD 184927 hosts a centrifugal magnetosphere (η _*˜ 2.4^{+22}_{-1.1}× 104), albeit one that is undetectable at optical wavelengths. The magnetic braking time-scale of HD 184927 is computed to be τJ = 0.96 or 5.8 Myr. These values are consistent with the slow rotation and estimated age of the star.

  19. Groundwater influences on the distribution and abundance of riverine smallmouth bass, Micropterus dolomieu, in pasture landscapes of the midwestern USA

    USGS Publications Warehouse

    Brewer, Shannon K.

    2013-01-01

    This study examined how spring-flow (SF) contributions to streams related to the distribution and abundance of smallmouth bass Micropterus dolomieu in a predominately pasture landscape in Missouri, USA. Stream segments (N=13) with similar landscape characters were classified by SF volume into high SF (HSF) or low SF (LSF) groups. The densities of smallmouth bass, channel unit (CU) use and temperature-selection patterns were assessed for several life stages and frequency distributions for age 0 fish. More smallmouth bass were present in stream segments with HSF influence. Age 0 fish were twice as likely to be present in HSF stream segments. Older age classes were present in stream reaches independent of SF contribution. For all age classes, the use of particular CUs did not depend on SF influence. All age classes were more likely to be present in pools than other CUs. Microhabitat temperature selection differed among age classes. Age 0 fish selected warmer temperatures with a gradual shift towards cooler temperatures for older age classes. The length frequency of age 0 fish was skewed towards larger individuals in streams with limited SF influence, whereas the length frequency in HSF stream segments was skewed towards smaller individuals. The benefits of significant groundwater via SF influence seem to be related to increased hatch or survival of age 0 fish and the availability of optimal temperatures for adult smallmouth bass growth. Thermal refugia and stable flows provided by springs should be recognised for their biological potential to provide suitable habitat as climate change and other land-use alterations increase temperature regimes and alter flow patterns.

  20. Biotic and abiotic influences on abundance and distribution of nonnative Chinook salmon and native ESA-listed steelhead in the Wind River, Washington

    USGS Publications Warehouse

    Jezorek, Ian G.; Connolly, Patrick J.

    2015-01-01

    Biotic and abiotic factors influence fish populations and distributions. Concerns have been raised about the influence of hatchery fish on wild populations. Carson National Fish Hatchery produces spring Chinook salmon Oncorhynchus tshawytscha in the Wind River, Washington, and some spawn in the river. Managers were concerned that Chinook salmon could negatively affect wild steelhead O. mykiss and that a self-sustaining population of Chinook salmon may develop. Our objectives were to assess: 1) the distribution and populations of juvenile spring Chinook salmon and juvenile steelhead in the upper Wind River; 2) the influence of stream flow and of each population on the other; and 3) if Chinook salmon populations were self-sustaining. We snorkeled to determine distribution and abundance. Flow in the fall influenced upstream distribution and abundance of juvenile Chinook salmon. Juvenile Chinook salmon densities were consistently low (range 0.0 to 5.7 fish 100 m-2) and not influenced by number of spawners, winter flow magnitude, or steelhead abundance. Juvenile steelhead were distributed through the study section each year. Age-0 and age-1 steelhead densities (age-0 range: 0.04 to 37.0 fish 100 m-2; age-1 range: 0.02 to 6.21 fish 100 m-2) were consistently higher than for juvenile Chinook salmon. Steelhead spawner abundance positively influenced juvenile steelhead abundance. During this study, Chinook salmon in the Wind River appear to have had little effect on steelhead. Low juvenile Chinook salmon abundance and a lack of a spawner-to-juvenile relationship suggest Chinook salmon are not self-sustaining and potential for such a population is low under current conditions.

  1. Satellite-derived NDVI, LST, and climatic factors driving the distribution and abundance of Anopheles mosquitoes in a former malarious area in northwest Argentina.

    PubMed

    Dantur Juri, María Julia; Estallo, Elizabet; Almirón, Walter; Santana, Mirta; Sartor, Paolo; Lamfri, Mario; Zaidenberg, Mario

    2015-06-01

    Distribution and abundance of disease vectors are directly related to climatic conditions and environmental changes. Remote sensing data have been used for monitoring environmental conditions influencing spatial patterns of vector-borne diseases. The aim of this study was to analyze the effect of the Normalized Difference Vegetation Index (NDVI) and Land Surface Temperature (LST) obtained from the Moderate Resolution Imaging Spectroradiometer (MODIS), and climatic factors (temperature, humidity, wind velocity, and accumulated rainfall) on the distribution and abundance of Anopheles species in northwestern Argentina using Poisson regression analyses. Samples were collected from December, 2001 to December, 2005 at three localities, Aguas Blancas, El Oculto and San Ramón de la Nueva Orán. We collected 11,206 adult Anopheles species, with the major abundance observed at El Oculto (59.11%), followed by Aguas Blancas (22.10%) and San Ramón de la Nueva Orán (18.79%). Anopheles pseudopunctipennis was the most abundant species at El Oculto, Anopheles argyritarsis predominated in Aguas Blancas, and Anopheles strodei in San Ramón de la Nueva Orán. Samples were collected throughout the sampling period, with the highest peaks during the spring seasons. LST and mean temperature appear to be the most important variables determining the distribution patterns and major abundance of An. pseudopunctipennis and An. argyritarsis within malarious areas. PMID:26047182

  2. Abundance and distribution of selected elements in soils, stream sediments, and selected forage plants from desert tortoise habitats in the Mojave and Colorado deserts, USA

    USGS Publications Warehouse

    Chaffee, M.A.; Berry, K.H.

    2006-01-01

    A baseline and background chemical survey was conducted in southeastern California, USA, to identify potential sources of toxicants in natural and anthropogenically-altered habitats of the threatened desert tortoise (Gopherus agassizii). Soil, stream sediment, and plant samples were collected from six tortoise habitat study areas in the Mojave and Colorado deserts and analysed for up to 66 different elements. The chemical analyses provided new information on the abundances and distributions of selected elements in this region. Soil, stream-sediment, and plant analyses showed distinct variations in bulk chemistries from locality to locality. Variations were, in general, consistent with the many types of exposed rock units in the region, their highly variable bulk mineralogies, and chemical contents. Of elements in soils that might have been toxic to tortoises, only As seemed to be anomalous region-wide. Some soil and plant anomalies were clearly anthropogenic. In the Rand and Atolia mining districts, soil anomalies for As, Au, Cd, Hg, Sb, and(or) W and plant anomalies for As, Sb, and(or) W extend as far as ???15 km outward from the present area of mining; soils containing anomalous Hg were found at least 6 km away from old piles of tailings. The anomalous concentrations of As and Hg may have been the source of elevated levels of these elements found in ill tortoises from the region. In the Goldstone mining district, soil anomalies extended several km from the mining area. These areas probably represented anthropogenic surface contamination of dust redistributed by wind, vehicles, and rainfall. One of two study areas transected by a paved road (Chemehuevi Valley) showed weakly elevated levels of Pb, which extended as far as ???22 m from the pavement edge and were probably related to vehicle exhaust. No soil or plant samples from historically used military areas (Goldstone, Goffs, Chemehuevi Valley, Chuckwalla Bench) contained anomalous concentrations of the elements

  3. Bull Trout Distribution and Abundance in the Waters on and Bordering the Warm Springs Reservation : 2002 Annual Report.

    SciTech Connect

    Brun, Christopher V.; Dodson, Rebekah

    2003-03-01

    The range of bull trout (Salvelinus confluentus) in the Deschutes River basin has decreased from historic levels due to many factors including dam construction, habitat degradation, brook trout introduction and eradication efforts. While the bull trout population appears to be healthy in the Metolius River-Lake Billy Chinook system they have been largely extirpated from the upper Deschutes River (Buchanan et al. 1997). Little was known about bull trout in the lower Deschutes basin until BPA funded project No.9405400 began during 1998. In this progress report we describe the findings to date from this multi-year study aimed at determining the life history, habitat needs and limiting factors of bull trout in the lower Deschutes subbasin. Juvenile bull trout and brook trout (Salvelinus fontinalis) relative abundance has been assessed in the Warm Springs River and Shitike Creek since 1999. In the Warm Springs R. the relative densities of juvenile bull trout and brook trout were .003 fish/m{sup 2} and .001 fish/m{sup 2} respectively during 2002. These densities were the lowest recorded in the Warm Springs River during the period of study. In Shitike Cr. the relative densities of juvenile bull trout and brook trout were .025 fish/m{sup 2} and .01 fish/m{sup 2} respectively during 2002. The utility of using index reaches to monitor trends in juvenile bull trout and brook trout relative abundance in the Warm Springs R. has been assessed since 1999. During 2002 the mean relative densities of juvenile bull trout within the 2.4 km study area was higher than what was observed in four index reaches. However, the mean relative densities of brook trout was slightly higher in the index reaches than what was observed in the 2.4 km study area. Habitat use by both juvenile bull trout and brook trout was determined in the Warm Springs R. Juvenile bull trout and brook trout were most abundant in pools and glides. However pools and glides comprised less than 20% of the available habitat

  4. Climate and local abundance in freshwater fishes

    PubMed Central

    Knouft, Jason H.; Anthony, Melissa M.

    2016-01-01

    Identifying factors regulating variation in numbers of individuals among populations across a species' distribution is a fundamental goal in ecology. A common prediction, often referred to as the abundant-centre hypothesis, suggests that abundance is highest near the centre of a species' range. However, because of the primary focus on the geographical position of a population, this framework provides little insight into the environmental factors regulating local abundance. While range-wide variation in population abundance associated with environmental conditions has been investigated in terrestrial species, the relationship between climate and local abundance in freshwater taxa across species' distributions is not well understood. We used GIS-based temperature and precipitation data to determine the relationships between climatic conditions and range-wide variation in local abundance for 19 species of North American freshwater fishes. Climate predicted a portion of the variation in local abundance among populations for 18 species. In addition, the relationship between climatic conditions and local abundance varied among species, which is expected as lineages partition the environment across geographical space. The influence of local habitat quality on species persistence is well documented; however, our results also indicate the importance of climate in regulating population sizes across a species geographical range, even in aquatic taxa. PMID:27429769

  5. Climate and local abundance in freshwater fishes.

    PubMed

    Knouft, Jason H; Anthony, Melissa M

    2016-06-01

    Identifying factors regulating variation in numbers of individuals among populations across a species' distribution is a fundamental goal in ecology. A common prediction, often referred to as the abundant-centre hypothesis, suggests that abundance is highest near the centre of a species' range. However, because of the primary focus on the geographical position of a population, this framework provides little insight into the environmental factors regulating local abundance. While range-wide variation in population abundance associated with environmental conditions has been investigated in terrestrial species, the relationship between climate and local abundance in freshwater taxa across species' distributions is not well understood. We used GIS-based temperature and precipitation data to determine the relationships between climatic conditions and range-wide variation in local abundance for 19 species of North American freshwater fishes. Climate predicted a portion of the variation in local abundance among populations for 18 species. In addition, the relationship between climatic conditions and local abundance varied among species, which is expected as lineages partition the environment across geographical space. The influence of local habitat quality on species persistence is well documented; however, our results also indicate the importance of climate in regulating population sizes across a species geographical range, even in aquatic taxa. PMID:27429769

  6. Distribution and abundance of fishes and invertebrates in Gulf of Mexico estuaries. Volume 1. Data summaries. Final report, 1985-1991

    SciTech Connect

    Nelson, D.M.; Monaco, M.E.; Williams, C.D.; Czapla, T.E.; Pattillo, M.E.

    1992-09-01

    The report presents information on the spatial and temporal distribution, and relative abundance of 44 fish and invertebrate species in 31 estuaries along the Gulf of Mexico coast of Florida, Alabama, Mississippi, Louisiana, and Texas. Its purpose is to disseminate data developed in the National Oceanic and Atmospheric Administration's (NOAA) Estuarine Living Marine Resources (ELMR) Program. The presence, distribution, and relative abundance of each species and the time period it uses each estuary are the primary data compiled. The report combines information presented in earlier reports for nine estuaries in Texas, 13 estuaries in Florida and Alabama, and nine estuaries in Louisiana and Mississippi. However, several species have been added, and the graphic depiction of relative abundance has been improved.

  7. Environmental factors shaping the abundance and distribution of laccase-encoding bacterial community with potential phenolic oxidase capacity during composting.

    PubMed

    Lu, Lunhui; Zeng, Guangming; Fan, Changzheng; Guo, Jinsong; Zhang, Jiachao; Chen, Ming; Wu, Haipeng; Yuan, Yujie; He, Xiaoxiao; He, Yan

    2015-11-01

    Increasing molecular evidence points to a wide occurrence of laccase-like multicopper oxidase (LMCO)-encoding genes in bacteria. Most researches mainly focused on the bacterial LMCO diversity, whereas the processes and the environmental factors responsible for structuring bacterial LMCO communities remain relatively unknown in a composting system. Six gene libraries were constructed from samples in representative stages during composting. A total of 185 sequences obtained from sample DNA extracts were classified to 59 operational taxonomic units (OTUs) based on 10 % cutoff. The distribution profile of bacterial LMCO genes showed that proteobacterial- and actinobacterial-associated species were the dominant communities during composting. Pearson correlation analysis indicated that the pile temperature and water-soluble carbon (WSC) content were significantly positively correlated with bacterial LMCO gene OTU numbers, Chao1 and Shannon index, whereas the humic acid (HA)-like carbon content had the most significant effect on the distribution of the bacterial LMCO genes during composting by redundancy analysis. These findings will improve the understanding of the mutual relationship between environmental factors and bacterial LMCO community compositions in composting. PMID:26104868

  8. New Strong-line Abundance Diagnostics for H II Regions: Effects of κ-distributed Electron Energies and New Atomic Data

    NASA Astrophysics Data System (ADS)

    Dopita, Michael A.; Sutherland, Ralph S.; Nicholls, David C.; Kewley, Lisa J.; Vogt, Frédéric P. A.

    2013-09-01

    Recently, Nicholls et al., inspired by in situ observations of solar system astrophysical plasmas, suggested that the electrons in H II regions are characterized by a κ-distribution of energies rather than a simple Maxwell-Boltzmann distribution. Here, we have collected together new atomic data within a modified photoionization code to explore the effects of both the new atomic data and the κ-distribution on the strong-line techniques used to determine chemical abundances in H II regions. By comparing the recombination temperatures (T rec) with the forbidden line temperatures (T FL), we conclude that κ ~ 20. While representing only a mild deviation from equilibrium, this result is sufficient to strongly influence abundances determined using methods that depend on measurements of the electron temperature from forbidden lines. We present a number of new emission line ratio diagnostics that cleanly separate the two parameters determining the optical spectrum of H II regions—the ionization parameter q or \\cal {U} and the chemical abundance, 12+log(O/H). An automated code to extract these parameters is presented. Using the homogeneous data set from van Zee et al., we find self-consistent results between all of these different diagnostics. The systematic errors between different line ratio diagnostics are much smaller than those found in the earlier strong-line work. Overall, the effect of the κ-distribution on the strong-line abundances derived solely on the basis of theoretical models is rather small.

  9. Determing Lamprey Species Composition, Larval Distribution, and Adult Abundance in the Deschutes River, Oregon, Subbasin; 2001-2002 Annual Report.

    SciTech Connect

    Graham, Jennifer C.; Brun, Christopher V.

    2003-05-01

    Information about lamprey species composition, distribution, life history, abundance, habitat requirements and exploitation in lower Deschutes River tributaries is extremely limited. To assess the status of lampreys in the Deschutes River subbasin, baseline information is needed. We operated to rotary screw traps in the Warm Springs River and Shitike Creek to gain an understanding of species composition, migration time and production. We identified Pacific lampreys in two life stages, ammocoete and macropthalmia. It appears that Pacific lamprey macropthalmia out-migrate during winter in the Warm Springs River. We saw peak movements by ammocoetes in the spring in Shitike Creek and winter in the Warm Springs River. We found no relationship between stream discharge and the number of lamprey collected. Very few macropthalmia were collected in Shitike Creek. Ammocoete size in the Warm Springs River and Shitike Creek were different. The ammocoetes in the Shitike Creek trap were close in size to the macropthalmia collected in the Warm Springs River trap. We also completed planning and preparation for larval and associated habitat data collection. This preparation included purchasing necessary field equipment, selecting and marking sampling areas and attending training with US Fish and Wildlife Service (USFWS) and the Confederated Tribes of Umatilla Indian Reservation (CTUIR). Because lamprey identification is difficult we met with US Geological Survey (USGS) to assist us with larval lamprey identification techniques. We have also been working in coordination with the Oregon Department of Fish and Wildlife (ODFW) to prepare and implement creel surveys and a mark-recapture study at Sherar's Falls to estimate adult lamprey escapement.

  10. Distribution and Abundance of Human Specific Bacteroides and Relation to Traditional Indicators in an Urban Tropical Catchment

    NASA Astrophysics Data System (ADS)

    Nshimyimana, J.; Shanahan, P.; Thompson, J. R.; Ekklesia, E.; Chua Hock Chye, L.

    2012-12-01

    The Singapore government through its Public Utilities Board is interested in opening Kranji Reservoir to recreational use. However, water courses within the Kranji Reservoir catchment contain human fecal indicator bacteria above recreational water quality criteria; their sources and distribution are unknown. The primary goals of this study were to determine the distribution of fecal indicator bacteria in drainages and water bodies in the Kranji reservoir catchment area. Total coliforms, E. coli, and the DNA-based HF marker (targeting a human specific strain of Bacteroides) were quantified in 27 samples collected in January 2009 and 54 samples collected in July 2009. Correlation of HF marker cell equivalents (CE) and E. coli abundance (colony forming units (CFU) or Most Probable Number (MPN)) to different land-use categories revealed potential sources of fecal contamination to the Kranji reservoir. Notably, areas designated as farming/agricultural were associated with the highest levels of E. coli (geometric mean 30,500 CFU/100 ml) and HF marker (1.23±1.13x106 CE/100 ml ± S.D.) while in general lower HF marker and E. coli levels were observed in residential areas, undeveloped areas, and within the Kranji reservoir (i.e. Kranji Reservoir had 2 to 17 MPN/100 ml of E. coli and 103 to 105 HF marker CE/100 ml). A partial survey of potential point sources for fecal contamination within the farming area revealed a wastewater effluent stream with HF marker levels exceeding 107 CE/100ml. As observed in previous studies, total coliforms and E. coli levels were weakly (R<0.4), or anti- correlated to HF marker concentrations across different land uses. Weak correspondence between traditional indicators (E. coli, total coliforms) and molecular indicators (HF marker) may be explained by differences in the ability of the respective organisms to grow or survive under aerated tropical conditions. The HF marker sequence matches that of Bacteroides dorei, an obligate anaerobe that

  11. Free-Nematodes in the NW Black Sea meiobenthos - diversity, abundance, distribution and importance as indicator of hypoxic waters

    NASA Astrophysics Data System (ADS)

    Muresan, M.; Gomoiu, M.-T.

    2012-04-01

    The aim of this study performed within EU FP7 Hypox Project was to get deeper knowledge about species of nematodes that could be indicators for stressful biotic conditions as low oxygen concentration due to phenomena of seasonal hypoxia. The Nematodes come from meiobenthos sampling (using a multi corer with 4 tubes, Mark II type, lowered into the sea from R/V "Mare Nigrum" board) performed in May and September 2010 and April 2011 along four transects crossing the Romanian continental shelf from where 87 meiobenthos samples were collected. In the studied area 96 species of nematodes were found. The authors analyzed the nematodes populations' distribution on four profiles: Sf. Gheorghe, Portita, Constanta and Mangalia. The qualitative and quantitative structure of nematodes populations was compared. 41 species were found on Mangalia profile, 47 species on Portita profile, 48 species on Constanta profile and 85 species on Sf. Gheorghe profile. The greatest densities were found on Constanta profile with an average of 369.607indvs/m-2. The most frequent and abundant species were: Sabatieria pulchra, Sabatieria abyssalis, Terschellingia longicaudata, Viscosia cobbi, Axonolaimus ponticus. The species assemblages were assessed for depth gradient distribution, 7 depth intervals being set from 20 to 210 m. The greatest diversity was noted in 61-100 m depth interval, while the lowest between 0-20 m. On the contrary, in terms of density of individuals (indvs/m-2), highest densities were obtained in shallow waters between 21-30 m. As far as the depth increases, the species assemblages change, becoming more favorable to species like Halalaimus ponticus, Metachromadora macrouthera, Halanonchus bullatus, Linhomoneidae species. However, on the first place still remained Sabatieria abyssalis. The vertical distribution of nematodes in sediments was analyzed for the surface layer 0-5 cm and sub-surface layer 5-10 cm, the dominant species in both layers being: Sabatieria pulchra, S

  12. Distribution and abundance of small plastic debris on beaches in the SE Pacific (Chile): a study supported by a citizen science project.

    PubMed

    Hidalgo-Ruz, Valeria; Thiel, Martin

    2013-01-01

    The accumulation of large and small plastic debris is a problem throughout the world's oceans and coastlines. Abundances and types of small plastic debris have only been reported for some isolated beaches in the SE Pacific, but these data are insufficient to evaluate the situation in this region. The citizen science project "National Sampling of Small Plastic Debris" was supported by schoolchildren from all over Chile who documented the distribution and abundance of small plastic debris on Chilean beaches. Thirty-nine schools and nearly 1000 students from continental Chile and Easter Island participated in the activity. To validate the data obtained by the students, all samples were recounted in the laboratory. The results of the present study showed that the students were able to follow the instructions and generate reliable data. The average abundance obtained was 27 small plastic pieces per m(2) for the continental coast of Chile, but the samples from Easter Island had extraordinarily higher abundances (>800 items per m(2)). The abundance of small plastic debris on the continental coast could be associated with coastal urban centers and their economic activities. The high abundance found on Easter Island can be explained mainly by the transport of plastic debris via the surface currents in the South Pacific Subtropical Gyre, resulting in the accumulation of small plastic debris on the beaches of the island. This first report of the widespread distribution and abundance of small plastic debris on Chilean beaches underscores the need to extend plastic debris research to ecological aspects of the problem and to improve waste management. PMID:23541391

  13. Predictive modelling of habitat use by marine predators with respect to the abundance and depth distribution of pelagic prey

    USGS Publications Warehouse

    Boyd, Charlotte; Castillo, Ramiro; Hunt, George L., Jr.; Punt, André E..; Vanblaricom, Glenn R.; Weimerskirch, Henri; Bertrand, Sophie

    2015-01-01

    Analysis of the relative importance of abundance and accessibility is essential for the design and evaluation of effective management responses to reduced prey availability for seabirds and other top predators in marine systems.

  14. Bull Trout Distribution and Abundance in the Waters on and Bordering the Warm Springs Indian Reservation, 2001 Annual Report.

    SciTech Connect

    Brun, Christopher V.

    2002-01-01

    The range of bull trout (Salvelinus confluentus) in the Deschutes River basin has decreased from historic levels due to many factors including dam construction, habitat degradation, brook trout introduction and eradication efforts. While the bull trout population appears to be stable in the Metolius River-Lake Billy Chinook system they have been largely extirpated from the upper Deschutes River (Buchanan et al. 1997). Little was known about bull trout in the lower Deschutes basin until BPA funded project No.9405400 began during 1998. In this progress report we describe the findings from the fourth year (2001) of the multi-year study aimed at determining the life history, habitat needs and limiting factors of bull trout in the lower Deschutes subbasin. Juvenile bull trout and brook trout (Salvelinus fontinalis) relative abundance was assessed in the Warm Springs River and Shitike Creek by night snorkeling. In the Warm Springs R. juvenile bull trout were slightly more numerous than brook trout, however, both were found in low densities. Relative densities of both species were the lowest observed since surveys began in 1999. Relative densities of juvenile bull trout and brook trout increased in Shitike Cr. Juvenile bull trout vastly out numbered brook trout in Shitike Cr. The utility of using index reaches to monitor trends in juvenile bull trout and brook trout relative abundance was assessed in the Warm Springs R. for the third year. Mean relative densities of juvenile bull trout within the index reaches was slightly higher than what was observed in the 2.4 km control reach. However, the mean relative density of brook trout in the 2.4 km control reach was slightly higher than what was observed in within the index reaches. Habitat use by both juvenile bull trout and brook trout was determined in the Warm Springs R. Juvenile bull trout and brook trout occupied pools more frequently than glides, riffles and rapids. However, pools accounted for only a small percentage

  15. Abundance and Distribution of Walleye, Northern Squawfish and Smallmouth Bass in John Day Reservoir and Tailrace, 1983 Annual Report.

    SciTech Connect

    Nigro, Anthony A.; Uremovich, Barry L.; Elliott, John C.

    1985-04-01

    Walleye, northern squawfish and smallmouth bass abundances were estimated in portions of John Day Reservoir and tailrace using a multiple mark and recapture method. Sampling was conducted from March 28 to September 23, 1983, using gill nets, trap nets, boat electrofishing, angling and an angler survey. A total of 1808 walleye, 6423 northern squawfish and 974 small mouth bass were collected. Abundance was estimated using a modified Schnabel estimator. Discrete populations were defined according to observed movements of recaptured and radiotagged fish. Abundance estimates were corrected for angler harvest, size selectivity by gear and recruitment due to growth during sampling. In addition, the likelihood of biases resulting from differential mortality of marked fish and tag loss was examined. Abundances of walleye with fork lengths greater than 250 mm were estimated as 6877 below John Day Dam and 9,463 in the upper John Day pool. Extensive movements by walleye within pools were observed. Angler harvest of walleye between May 25 and September 6 was estimated as 527 in John Day tailrace and 465 in McNary tailrace. Abundances of northern squawfish with fork lengths greater than 250 mm were estimated to be 32,126 below John Day Dam, 10,841 forebay and 27,771 in upper John Day pool. The estimated number of northern squawfish in the McNary tailrace boat restricted zone after cessation of spill (July 2) was twice the estimated abundance during spill (March 28-July 1). Smallmouth bass abundance was estimated as 1087 below John Day Dam, 1501 in John Day forebay and 3,450 in upper John Day pool. 16 refs., 32 figs., 47 tabs.

  16. Platinum-group element abundance and distribution in chromite deposits of the Acoje Block, Zambales Ophiolite Complex, Philippines

    USGS Publications Warehouse

    Bacuta, G.C., Jr.; Kay, R.W.; Gibbs, A.K.; Lipin, B.R.

    1990-01-01

    Platinum-group elements (PGE) occur in ore-grade concentration in some of the chromite deposits related to the ultramafic section of the Acoje Block of the Zambales Ophiolite Complex. The deposits are of three types: Type 1 - associated with cumulate peridotites at the base of the crust; Type 2 - in dunite pods from the top 1 km of mantle harzburgite; and Type 3 - like Type 2, but in deeper levels of the harzburgite. Most of the deposites have chromite compositions that are high in Cr with Cr/(Cr + Al) (expressed as chromium index, Cr#) > 0.6; high-Al (Cr# Pd, thought to be characteristic of PGE-barren deposits) and positive slope (Ir < Pd, characteristic of PGE-rich deposits). Iridium, Ru and Os commonly occur as micron-size laurite (sulfide) inclusions in unfractured chromite. Laurite and native Os are also found as inclusions in interstitial sulfides. Platinum and Pd occur as alloy inclusions (and possibly as solid solution) in interstitial Ni-Cu sulfides and as tellurobismuthides in serpentine and altered sulfides. Variability of PGE distribution may be explained by alteration, crystal fractionation or partial melting processes. Alteration and metamorphism were ruled out, because PGE contents do not correlate with degree of serpentinization or the abundance and type (hydroxyl versus non-hydroxyl) of silicate inclusions in chromite. Preliminary Os isotopic data do not support crustal contamination as a source of the PGEs in the Acoje deposits. The anomalous PGE concentrations in Type 1 high-Cr chromite deposits are attributed to two stages of enrichment: an early enrichment of their mantle source from previous melting events and a later stage of sulfide segregation accompanying chromite crystallization. High-Al chromite deposits which crystallized from basalts derived from relatively low degrees of melting owe their low PGE content to partitioning of PGEs in sulfides and alloys that remain in the mantle. High-Cr deposits crystallized from melts that were

  17. Spatial distribution and inter-annual variations in the size frequency distribution and abundances of Pleuragramma antarcticum larvae in the Dumont d’Urville Sea from 2004 to 2010

    NASA Astrophysics Data System (ADS)

    Koubbi, Philippe; O'Brien, Colleen; Loots, Christophe; Giraldo, Carolina; Smith, Martina; Tavernier, Eric; Vacchi, Marino; Vallet, Carole; Chevallier, Jean; Moteki, Masato

    2011-08-01

    This paper investigates the abundance and distribution of Pleuragramma antarcticum larvae by size class in the Dumont d’Urville Sea from 2004 to 2010. Samples were collected between Dumont d’Urville station and the Mertz Glacier Tongue onboard the RV l’ Astrolabe for studying the inter-annual and spatial distribution of fish larvae and the TRV Umitaka Maru for looking at life stages vertical distributions. The seabed depression adjacent to the Mertz Glacier Tongue and in Commonwealth Bay hosted high abundances of small P. antarcticum larvae, while larger larvae were found in lower abundance and further offshore. We found that canyons, sea ice, stability of the water column and temperatures are important features for determining suitable areas for young larvae.

  18. Adult activity and temperature preference drives region-wide damselfly (Zygoptera) distributions under a warming climate

    PubMed Central

    Corser, Jeffrey D.; White, Erin L.; Schlesinger, Matthew D.

    2015-01-01

    We analysed a recently completed statewide odonate Atlas using multivariate linear models. Within a phylogenetically explicit framework, we developed a suite of data-derived traits to assess the mechanistic distributional drivers of 59 species of damselflies in New York State (NYS). We found that length of the flight season (adult breeding activity period) mediated by thermal preference drives regional distributions at broad (105 km2) scales. Species that had longer adult flight periods, in conjunction with longer growing seasons, had significantly wider distributions. These intrinsic traits shape species' responses to changing climates and the mechanisms behind such range shifts are fitness-based metapopulation processes that adjust phenology to the prevailing habitat and climate regime through a photoperiod filter. PMID:25878048

  19. Binary star statistics - The mass ratio distribution for very wide systems

    NASA Astrophysics Data System (ADS)

    Trimble, V.

    Published observational data on a common-proper-motion sample (CPMS) of 326 pairs of AGK 3 stars (Halbwachs, 1986) with proper motion greater than 50 marcsec/yr and separation/proper-motion ratios less than 1000 yr are analyzed statistically to determine the frequency distribution of mass ratios (q = M2/M1). The results are presented in tables and graphs and compared with those for a sample of 798 visual binaries (VBs) studied by Worley and Heintz (1983). Both samples are found to have distributions with a peak at q = about 1, but this tendency is more pronounced in the VBs than in the CPMS. The q distribution of the VB sample, unlike that of the CPMS, cannot be explained by assuming that it is a random sample of normal initial mass functions; from this it is inferred that a binary formation mechanism which favors systems with q = about 1 may be involved.

  20. A world-wide distributed system using Java and the internet

    SciTech Connect

    Chandy, K.M.; Rifkin, A.; Sivilotti, P.A.G.

    1996-12-31

    This paper describes the design of a distributed system built using Java that supports peer-to-peer communication among processes spread across a network. We identify the requirements of a software layer that supports distributed computing, and we propose a design that meets those requirements. Our primary concerns are (1) the identification, specification, and implementation of software components that can be composed in different ways to develop correct distributed applications; (2) reasoning about the components systematically; and (3) providing services to the components. This paper deals with the last of these concerns. Though our implementation uses Java, the fundamental ideas apply to any object-oriented language that supports messaging and threads. Alternative implementations use such languages coupled with object request brokers or remote procedure invocation mechanisms.