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Sample records for accurate high spatial

  1. Practical aspects of spatially high accurate methods

    NASA Technical Reports Server (NTRS)

    Godfrey, Andrew G.; Mitchell, Curtis R.; Walters, Robert W.

    1992-01-01

    The computational qualities of high order spatially accurate methods for the finite volume solution of the Euler equations are presented. Two dimensional essentially non-oscillatory (ENO), k-exact, and 'dimension by dimension' ENO reconstruction operators are discussed and compared in terms of reconstruction and solution accuracy, computational cost and oscillatory behavior in supersonic flows with shocks. Inherent steady state convergence difficulties are demonstrated for adaptive stencil algorithms. An exact solution to the heat equation is used to determine reconstruction error, and the computational intensity is reflected in operation counts. Standard MUSCL differencing is included for comparison. Numerical experiments presented include the Ringleb flow for numerical accuracy and a shock reflection problem. A vortex-shock interaction demonstrates the ability of the ENO scheme to excel in simulating unsteady high-frequency flow physics.

  2. Progress toward accurate high spatial resolution actinide analysis by EPMA

    NASA Astrophysics Data System (ADS)

    Jercinovic, M. J.; Allaz, J. M.; Williams, M. L.

    2010-12-01

    High precision, high spatial resolution EPMA of actinides is a significant issue for geochronology, resource geochemistry, and studies involving the nuclear fuel cycle. Particular interest focuses on understanding of the behavior of Th and U in the growth and breakdown reactions relevant to actinide-bearing phases (monazite, zircon, thorite, allanite, etc.), and geochemical fractionation processes involving Th and U in fluid interactions. Unfortunately, the measurement of minor and trace concentrations of U in the presence of major concentrations of Th and/or REEs is particularly problematic, especially in complexly zoned phases with large compositional variation on the micro or nanoscale - spatial resolutions now accessible with modern instruments. Sub-micron, high precision compositional analysis of minor components is feasible in very high Z phases where scattering is limited at lower kV (15kV or less) and where the beam diameter can be kept below 400nm at high current (e.g. 200-500nA). High collection efficiency spectrometers and high performance electron optics in EPMA now allow the use of lower overvoltage through an exceptional range in beam current, facilitating higher spatial resolution quantitative analysis. The U LIII edge at 17.2 kV precludes L-series analysis at low kV (high spatial resolution), requiring careful measurements of the actinide M series. Also, U-La detection (wavelength = 0.9A) requires the use of LiF (220) or (420), not generally available on most instruments. Strong peak overlaps of Th on U make highly accurate interference correction mandatory, with problems compounded by the ThMIV and ThMV absorption edges affecting peak, background, and interference calibration measurements (especially the interference of the Th M line family on UMb). Complex REE bearing phases such as monazite, zircon, and allanite have particularly complex interference issues due to multiple peak and background overlaps from elements present in the activation

  3. Two highly accurate methods for pitch calibration

    NASA Astrophysics Data System (ADS)

    Kniel, K.; Härtig, F.; Osawa, S.; Sato, O.

    2009-11-01

    Among profiles, helix and tooth thickness pitch is one of the most important parameters of an involute gear measurement evaluation. In principle, coordinate measuring machines (CMM) and CNC-controlled gear measuring machines as a variant of a CMM are suited for these kinds of gear measurements. Now the Japan National Institute of Advanced Industrial Science and Technology (NMIJ/AIST) and the German national metrology institute the Physikalisch-Technische Bundesanstalt (PTB) have each developed independently highly accurate pitch calibration methods applicable to CMM or gear measuring machines. Both calibration methods are based on the so-called closure technique which allows the separation of the systematic errors of the measurement device and the errors of the gear. For the verification of both calibration methods, NMIJ/AIST and PTB performed measurements on a specially designed pitch artifact. The comparison of the results shows that both methods can be used for highly accurate calibrations of pitch standards.

  4. High Frequency QRS ECG Accurately Detects Cardiomyopathy

    NASA Technical Reports Server (NTRS)

    Schlegel, Todd T.; Arenare, Brian; Poulin, Gregory; Moser, Daniel R.; Delgado, Reynolds

    2005-01-01

    High frequency (HF, 150-250 Hz) analysis over the entire QRS interval of the ECG is more sensitive than conventional ECG for detecting myocardial ischemia. However, the accuracy of HF QRS ECG for detecting cardiomyopathy is unknown. We obtained simultaneous resting conventional and HF QRS 12-lead ECGs in 66 patients with cardiomyopathy (EF = 23.2 plus or minus 6.l%, mean plus or minus SD) and in 66 age- and gender-matched healthy controls using PC-based ECG software recently developed at NASA. The single most accurate ECG parameter for detecting cardiomyopathy was an HF QRS morphological score that takes into consideration the total number and severity of reduced amplitude zones (RAZs) present plus the clustering of RAZs together in contiguous leads. This RAZ score had an area under the receiver operator curve (ROC) of 0.91, and was 88% sensitive, 82% specific and 85% accurate for identifying cardiomyopathy at optimum score cut-off of 140 points. Although conventional ECG parameters such as the QRS and QTc intervals were also significantly longer in patients than controls (P less than 0.001, BBBs excluded), these conventional parameters were less accurate (area under the ROC = 0.77 and 0.77, respectively) than HF QRS morphological parameters for identifying underlying cardiomyopathy. The total amplitude of the HF QRS complexes, as measured by summed root mean square voltages (RMSVs), also differed between patients and controls (33.8 plus or minus 11.5 vs. 41.5 plus or minus 13.6 mV, respectively, P less than 0.003), but this parameter was even less accurate in distinguishing the two groups (area under ROC = 0.67) than the HF QRS morphologic and conventional ECG parameters. Diagnostic accuracy was optimal (86%) when the RAZ score from the HF QRS ECG and the QTc interval from the conventional ECG were used simultaneously with cut-offs of greater than or equal to 40 points and greater than or equal to 445 ms, respectively. In conclusion 12-lead HF QRS ECG employing

  5. Apparatus for accurately measuring high temperatures

    DOEpatents

    Smith, Douglas D.

    1985-01-01

    The present invention is a thermometer used for measuring furnace temperaes in the range of about 1800.degree. to 2700.degree. C. The thermometer comprises a broadband multicolor thermal radiation sensor positioned to be in optical alignment with the end of a blackbody sight tube extending into the furnace. A valve-shutter arrangement is positioned between the radiation sensor and the sight tube and a chamber for containing a charge of high pressure gas is positioned between the valve-shutter arrangement and the radiation sensor. A momentary opening of the valve shutter arrangement allows a pulse of the high gas to purge the sight tube of air-borne thermal radiation contaminants which permits the radiation sensor to accurately measure the thermal radiation emanating from the end of the sight tube.

  6. Apparatus for accurately measuring high temperatures

    DOEpatents

    Smith, D.D.

    The present invention is a thermometer used for measuring furnace temperatures in the range of about 1800/sup 0/ to 2700/sup 0/C. The thermometer comprises a broadband multicolor thermal radiation sensor positioned to be in optical alignment with the end of a blackbody sight tube extending into the furnace. A valve-shutter arrangement is positioned between the radiation sensor and the sight tube and a chamber for containing a charge of high pressure gas is positioned between the valve-shutter arrangement and the radiation sensor. A momentary opening of the valve shutter arrangement allows a pulse of the high gas to purge the sight tube of air-borne thermal radiation contaminants which permits the radiation sensor to accurately measure the thermal radiation emanating from the end of the sight tube.

  7. Highly accurate articulated coordinate measuring machine

    DOEpatents

    Bieg, Lothar F.; Jokiel, Jr., Bernhard; Ensz, Mark T.; Watson, Robert D.

    2003-12-30

    Disclosed is a highly accurate articulated coordinate measuring machine, comprising a revolute joint, comprising a circular encoder wheel, having an axis of rotation; a plurality of marks disposed around at least a portion of the circumference of the encoder wheel; bearing means for supporting the encoder wheel, while permitting free rotation of the encoder wheel about the wheel's axis of rotation; and a sensor, rigidly attached to the bearing means, for detecting the motion of at least some of the marks as the encoder wheel rotates; a probe arm, having a proximal end rigidly attached to the encoder wheel, and having a distal end with a probe tip attached thereto; and coordinate processing means, operatively connected to the sensor, for converting the output of the sensor into a set of cylindrical coordinates representing the position of the probe tip relative to a reference cylindrical coordinate system.

  8. The high cost of accurate knowledge.

    PubMed

    Sutcliffe, Kathleen M; Weber, Klaus

    2003-05-01

    Many business thinkers believe it's the role of senior managers to scan the external environment to monitor contingencies and constraints, and to use that precise knowledge to modify the company's strategy and design. As these thinkers see it, managers need accurate and abundant information to carry out that role. According to that logic, it makes sense to invest heavily in systems for collecting and organizing competitive information. Another school of pundits contends that, since today's complex information often isn't precise anyway, it's not worth going overboard with such investments. In other words, it's not the accuracy and abundance of information that should matter most to top executives--rather, it's how that information is interpreted. After all, the role of senior managers isn't just to make decisions; it's to set direction and motivate others in the face of ambiguities and conflicting demands. Top executives must interpret information and communicate those interpretations--they must manage meaning more than they must manage information. So which of these competing views is the right one? Research conducted by academics Sutcliffe and Weber found that how accurate senior executives are about their competitive environments is indeed less important for strategy and corresponding organizational changes than the way in which they interpret information about their environments. Investments in shaping those interpretations, therefore, may create a more durable competitive advantage than investments in obtaining and organizing more information. And what kinds of interpretations are most closely linked with high performance? Their research suggests that high performers respond positively to opportunities, yet they aren't overconfident in their abilities to take advantage of those opportunities.

  9. Developing Accurate Spatial Maps of Cotton Fiber Quality Parameters

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Awareness of the importance of cotton fiber quality (Gossypium, L. sps.) has increased as advances in spinning technology require better quality cotton fiber. Recent advances in geospatial information sciences allow an improved ability to study the extent and causes of spatial variability in fiber p...

  10. High order accurate solutions of viscous problems

    NASA Technical Reports Server (NTRS)

    Hayder, M. E.; Turkel, Eli

    1993-01-01

    We consider a fourth order extension to MacCormack's scheme. The original extension was fourth order only for the inviscid terms but was second order for the viscous terms. We show how to modify the viscous terms so that the scheme is uniformly fourth order in the spatial derivatives. Applications are given to some boundary layer flows. In addition, for applications to shear flows the effect of the outflow boundary conditions are very important. We compare the accuracy of several of these different boundary conditions for both boundary layer and shear flows. Stretching at the outflow usually increases the oscillations in the numerical solution but the addition of a filtered sponge layer (with or without stretching) reduces such oscillations. The oscillations are generated by insufficient resolution of the shear layer. When the shear layer is sufficiently resolved then oscillations are not generated and there is less of a need for a nonreflecting boundary condition.

  11. Accurate measurement of spatial noise portraits of photosensors of digital cameras

    NASA Astrophysics Data System (ADS)

    Cheremkhin, P. A.; Evtikhiev, N. N.; Krasnov, V. V.; Kulakov, M. N.; Starikov, R. S.

    2016-08-01

    Method of measurement of accurate portraits of light and dark spatial noise of photosensors is described. The method consists of four steps: creation of spatially homogeneous illumination; shooting light and dark frames; digital processing and filtering. Unlike standard technique, this method uses iterative creation of spatially homogeneous illumination by display, compensation of photosensor dark spatial noise portrait and improved procedure of elimination of dark temporal noise. Portraits of light and dark spatial noise of photosensors of a scientific digital camera were found. Characteristics of the measured portraits were compared with values of photo response and dark signal non-uniformities of camera's photosensor.

  12. Highly accurate fast lung CT registration

    NASA Astrophysics Data System (ADS)

    Rühaak, Jan; Heldmann, Stefan; Kipshagen, Till; Fischer, Bernd

    2013-03-01

    Lung registration in thoracic CT scans has received much attention in the medical imaging community. Possible applications range from follow-up analysis, motion correction for radiation therapy, monitoring of air flow and pulmonary function to lung elasticity analysis. In a clinical environment, runtime is always a critical issue, ruling out quite a few excellent registration approaches. In this paper, a highly efficient variational lung registration method based on minimizing the normalized gradient fields distance measure with curvature regularization is presented. The method ensures diffeomorphic deformations by an additional volume regularization. Supplemental user knowledge, like a segmentation of the lungs, may be incorporated as well. The accuracy of our method was evaluated on 40 test cases from clinical routine. In the EMPIRE10 lung registration challenge, our scheme ranks third, with respect to various validation criteria, out of 28 algorithms with an average landmark distance of 0.72 mm. The average runtime is about 1:50 min on a standard PC, making it by far the fastest approach of the top-ranking algorithms. Additionally, the ten publicly available DIR-Lab inhale-exhale scan pairs were registered to subvoxel accuracy at computation times of only 20 seconds. Our method thus combines very attractive runtimes with state-of-the-art accuracy in a unique way.

  13. High Spatial Resolution Commercial Satellite Imaging Product Characterization

    NASA Technical Reports Server (NTRS)

    Ryan, Robert E.; Pagnutti, Mary; Blonski, Slawomir; Ross, Kenton W.; Stnaley, Thomas

    2005-01-01

    NASA Stennis Space Center's Remote Sensing group has been characterizing privately owned high spatial resolution multispectral imaging systems, such as IKONOS, QuickBird, and OrbView-3. Natural and man made targets were used for spatial resolution, radiometric, and geopositional characterizations. Higher spatial resolution also presents significant adjacency effects for accurate reliable radiometry.

  14. Accurate localization of in-body medical implants based on spatial sparsity.

    PubMed

    Pourhomayoun, Mohammad; Jin, Zhanpeng; Fowler, Mark L

    2014-02-01

    Wearable and implantable wireless communication devices have in recent years gained increasing attention for medical diagnostics and therapeutics. In particular, wireless capsule endoscopy has become a popular method to visualize and diagnose the human gastrointestinal tract. Estimating the exact position of the capsule when each image is taken is a very critical issue in capsule endoscopy. Several approaches have been developed by researchers to estimate the capsule location. However, some unique challenges exist for in-body localization, such as the severe multipath issue caused by the boundaries of different organs, inconsistency of signal propagation velocity and path loss parameters inside the human body, and the regulatory restrictions on using high-bandwidth or high-power signals. In this paper, we propose a novel localization method based on spatial sparsity. We directly estimate the location of the capsule without going through the usual intermediate stage of first estimating time-of-arrival or received-signal strength, and then a second stage of estimating the location. We demonstrate the accuracy of the proposed method through extensive Monte Carlo simulations for radio frequency emission signals within the required power and bandwidth range. The results show that the proposed method is effective and accurate, even in massive multipath conditions. PMID:24108709

  15. Accurate localization of in-body medical implants based on spatial sparsity.

    PubMed

    Pourhomayoun, Mohammad; Jin, Zhanpeng; Fowler, Mark L

    2014-02-01

    Wearable and implantable wireless communication devices have in recent years gained increasing attention for medical diagnostics and therapeutics. In particular, wireless capsule endoscopy has become a popular method to visualize and diagnose the human gastrointestinal tract. Estimating the exact position of the capsule when each image is taken is a very critical issue in capsule endoscopy. Several approaches have been developed by researchers to estimate the capsule location. However, some unique challenges exist for in-body localization, such as the severe multipath issue caused by the boundaries of different organs, inconsistency of signal propagation velocity and path loss parameters inside the human body, and the regulatory restrictions on using high-bandwidth or high-power signals. In this paper, we propose a novel localization method based on spatial sparsity. We directly estimate the location of the capsule without going through the usual intermediate stage of first estimating time-of-arrival or received-signal strength, and then a second stage of estimating the location. We demonstrate the accuracy of the proposed method through extensive Monte Carlo simulations for radio frequency emission signals within the required power and bandwidth range. The results show that the proposed method is effective and accurate, even in massive multipath conditions.

  16. ACCURATE CHARACTERIZATION OF HIGH-DEGREE MODES USING MDI OBSERVATIONS

    SciTech Connect

    Korzennik, S. G.; Rabello-Soares, M. C.; Schou, J.; Larson, T. P.

    2013-08-01

    We present the first accurate characterization of high-degree modes, derived using the best Michelson Doppler Imager (MDI) full-disk full-resolution data set available. A 90 day long time series of full-disk 2 arcsec pixel{sup -1} resolution Dopplergrams was acquired in 2001, thanks to the high rate telemetry provided by the Deep Space Network. These Dopplergrams were spatially decomposed using our best estimate of the image scale and the known components of MDI's image distortion. A multi-taper power spectrum estimator was used to generate power spectra for all degrees and all azimuthal orders, up to l = 1000. We used a large number of tapers to reduce the realization noise, since at high degrees the individual modes blend into ridges and thus there is no reason to preserve a high spectral resolution. These power spectra were fitted for all degrees and all azimuthal orders, between l = 100 and l = 1000, and for all the orders with substantial amplitude. This fitting generated in excess of 5.2 Multiplication-Sign 10{sup 6} individual estimates of ridge frequencies, line widths, amplitudes, and asymmetries (singlets), corresponding to some 5700 multiplets (l, n). Fitting at high degrees generates ridge characteristics, characteristics that do not correspond to the underlying mode characteristics. We used a sophisticated forward modeling to recover the best possible estimate of the underlying mode characteristics (mode frequencies, as well as line widths, amplitudes, and asymmetries). We describe in detail this modeling and its validation. The modeling has been extensively reviewed and refined, by including an iterative process to improve its input parameters to better match the observations. Also, the contribution of the leakage matrix on the accuracy of the procedure has been carefully assessed. We present the derived set of corrected mode characteristics, which includes not only frequencies, but line widths, asymmetries, and amplitudes. We present and discuss

  17. Wakeful rest promotes the integration of spatial memories into accurate cognitive maps.

    PubMed

    Craig, Michael; Dewar, Michaela; Harris, Mathew A; Della Sala, Sergio; Wolbers, Thomas

    2016-02-01

    Flexible spatial navigation, e.g. the ability to take novel shortcuts, is contingent upon accurate mental representations of environments-cognitive maps. These cognitive maps critically depend on hippocampal place cells. In rodents, place cells replay recently travelled routes, especially during periods of behavioural inactivity (sleep/wakeful rest). This neural replay is hypothesised to promote not only the consolidation of specific experiences, but also their wider integration, e.g. into accurate cognitive maps. In humans, rest promotes the consolidation of specific experiences, but the effect of rest on the wider integration of memories remained unknown. In the present study, we examined the hypothesis that cognitive map formation is supported by rest-related integration of new spatial memories. We predicted that if wakeful rest supports cognitive map formation, then rest should enhance knowledge of overarching spatial relations that were never experienced directly during recent navigation. Forty young participants learned a route through a virtual environment before either resting wakefully or engaging in an unrelated perceptual task for 10 min. Participants in the wakeful rest condition performed more accurately in a delayed cognitive map test, requiring the pointing to landmarks from a range of locations. Importantly, the benefit of rest could not be explained by active rehearsal, but can be attributed to the promotion of consolidation-related activity. These findings (i) resonate with the demonstration of hippocampal replay in rodents, and (ii) provide the first evidence that wakeful rest can improve the integration of new spatial memories in humans, a function that has, hitherto, been associated with sleep.

  18. Second-order accurate difference schemes on highly irregular meshes

    SciTech Connect

    Manteuffel, T.A.; White, A.B. Jr.

    1988-01-01

    In this paper compact-as-possible second-order accurate difference schemes will be constructed for boundary-value problems of arbitrary order on highly irregular meshes. It will be shown that for equations of order (K) these schemes will have truncation error of order (3/endash/K). This phenomena is known as supraconvergence. 7 refs.

  19. The importance of accurate road data for spatial applications in public health: customizing a road network

    PubMed Central

    Frizzelle, Brian G; Evenson, Kelly R; Rodriguez, Daniel A; Laraia, Barbara A

    2009-01-01

    Background Health researchers have increasingly adopted the use of geographic information systems (GIS) for analyzing environments in which people live and how those environments affect health. One aspect of this research that is often overlooked is the quality and detail of the road data and whether or not it is appropriate for the scale of analysis. Many readily available road datasets, both public domain and commercial, contain positional errors or generalizations that may not be compatible with highly accurate geospatial locations. This study examined the accuracy, completeness, and currency of four readily available public and commercial sources for road data (North Carolina Department of Transportation, StreetMap Pro, TIGER/Line 2000, TIGER/Line 2007) relative to a custom road dataset which we developed and used for comparison. Methods and Results A custom road network dataset was developed to examine associations between health behaviors and the environment among pregnant and postpartum women living in central North Carolina in the United States. Three analytical measures were developed to assess the comparative accuracy and utility of four publicly and commercially available road datasets and the custom dataset in relation to participants' residential locations over three time periods. The exclusion of road segments and positional errors in the four comparison road datasets resulted in between 5.9% and 64.4% of respondents lying farther than 15.24 meters from their nearest road, the distance of the threshold set by the project to facilitate spatial analysis. Agreement, using a Pearson's correlation coefficient, between the customized road dataset and the four comparison road datasets ranged from 0.01 to 0.82. Conclusion This study demonstrates the importance of examining available road datasets and assessing their completeness, accuracy, and currency for their particular study area. This paper serves as an example for assessing the feasibility of readily

  20. A high order accurate difference scheme for complex flow fields

    SciTech Connect

    Dexun Fu; Yanwen Ma

    1997-06-01

    A high order accurate finite difference method for direct numerical simulation of coherent structure in the mixing layers is presented. The reason for oscillation production in numerical solutions is analyzed. It is caused by a nonuniform group velocity of wavepackets. A method of group velocity control for the improvement of the shock resolution is presented. In numerical simulation the fifth-order accurate upwind compact difference relation is used to approximate the derivatives in the convection terms of the compressible N-S equations, a sixth-order accurate symmetric compact difference relation is used to approximate the viscous terms, and a three-stage R-K method is used to advance in time. In order to improve the shock resolution the scheme is reconstructed with the method of diffusion analogy which is used to control the group velocity of wavepackets. 18 refs., 12 figs., 1 tab.

  1. Uniformly high order accurate essentially non-oscillatory schemes 3

    NASA Technical Reports Server (NTRS)

    Harten, A.; Engquist, B.; Osher, S.; Chakravarthy, S. R.

    1986-01-01

    In this paper (a third in a series) the construction and the analysis of essentially non-oscillatory shock capturing methods for the approximation of hyperbolic conservation laws are presented. Also presented is a hierarchy of high order accurate schemes which generalizes Godunov's scheme and its second order accurate MUSCL extension to arbitrary order of accuracy. The design involves an essentially non-oscillatory piecewise polynomial reconstruction of the solution from its cell averages, time evolution through an approximate solution of the resulting initial value problem, and averaging of this approximate solution over each cell. The reconstruction algorithm is derived from a new interpolation technique that when applied to piecewise smooth data gives high-order accuracy whenever the function is smooth but avoids a Gibbs phenomenon at discontinuities. Unlike standard finite difference methods this procedure uses an adaptive stencil of grid points and consequently the resulting schemes are highly nonlinear.

  2. A Simple Iterative Model Accurately Captures Complex Trapline Formation by Bumblebees Across Spatial Scales and Flower Arrangements

    PubMed Central

    Reynolds, Andrew M.; Lihoreau, Mathieu; Chittka, Lars

    2013-01-01

    Pollinating bees develop foraging circuits (traplines) to visit multiple flowers in a manner that minimizes overall travel distance, a task analogous to the travelling salesman problem. We report on an in-depth exploration of an iterative improvement heuristic model of bumblebee traplining previously found to accurately replicate the establishment of stable routes by bees between flowers distributed over several hectares. The critical test for a model is its predictive power for empirical data for which the model has not been specifically developed, and here the model is shown to be consistent with observations from different research groups made at several spatial scales and using multiple configurations of flowers. We refine the model to account for the spatial search strategy of bees exploring their environment, and test several previously unexplored predictions. We find that the model predicts accurately 1) the increasing propensity of bees to optimize their foraging routes with increasing spatial scale; 2) that bees cannot establish stable optimal traplines for all spatial configurations of rewarding flowers; 3) the observed trade-off between travel distance and prioritization of high-reward sites (with a slight modification of the model); 4) the temporal pattern with which bees acquire approximate solutions to travelling salesman-like problems over several dozen foraging bouts; 5) the instability of visitation schedules in some spatial configurations of flowers; 6) the observation that in some flower arrays, bees' visitation schedules are highly individually different; 7) the searching behaviour that leads to efficient location of flowers and routes between them. Our model constitutes a robust theoretical platform to generate novel hypotheses and refine our understanding about how small-brained insects develop a representation of space and use it to navigate in complex and dynamic environments. PMID:23505353

  3. A simple iterative model accurately captures complex trapline formation by bumblebees across spatial scales and flower arrangements.

    PubMed

    Reynolds, Andrew M; Lihoreau, Mathieu; Chittka, Lars

    2013-01-01

    Pollinating bees develop foraging circuits (traplines) to visit multiple flowers in a manner that minimizes overall travel distance, a task analogous to the travelling salesman problem. We report on an in-depth exploration of an iterative improvement heuristic model of bumblebee traplining previously found to accurately replicate the establishment of stable routes by bees between flowers distributed over several hectares. The critical test for a model is its predictive power for empirical data for which the model has not been specifically developed, and here the model is shown to be consistent with observations from different research groups made at several spatial scales and using multiple configurations of flowers. We refine the model to account for the spatial search strategy of bees exploring their environment, and test several previously unexplored predictions. We find that the model predicts accurately 1) the increasing propensity of bees to optimize their foraging routes with increasing spatial scale; 2) that bees cannot establish stable optimal traplines for all spatial configurations of rewarding flowers; 3) the observed trade-off between travel distance and prioritization of high-reward sites (with a slight modification of the model); 4) the temporal pattern with which bees acquire approximate solutions to travelling salesman-like problems over several dozen foraging bouts; 5) the instability of visitation schedules in some spatial configurations of flowers; 6) the observation that in some flower arrays, bees' visitation schedules are highly individually different; 7) the searching behaviour that leads to efficient location of flowers and routes between them. Our model constitutes a robust theoretical platform to generate novel hypotheses and refine our understanding about how small-brained insects develop a representation of space and use it to navigate in complex and dynamic environments.

  4. Library preparation for highly accurate population sequencing of RNA viruses

    PubMed Central

    Acevedo, Ashley; Andino, Raul

    2015-01-01

    Circular resequencing (CirSeq) is a novel technique for efficient and highly accurate next-generation sequencing (NGS) of RNA virus populations. The foundation of this approach is the circularization of fragmented viral RNAs, which are then redundantly encoded into tandem repeats by ‘rolling-circle’ reverse transcription. When sequenced, the redundant copies within each read are aligned to derive a consensus sequence of their initial RNA template. This process yields sequencing data with error rates far below the variant frequencies observed for RNA viruses, facilitating ultra-rare variant detection and accurate measurement of low-frequency variants. Although library preparation takes ~5 d, the high-quality data generated by CirSeq simplifies downstream data analysis, making this approach substantially more tractable for experimentalists. PMID:24967624

  5. Fractionating Polymer Microspheres as Highly Accurate Density Standards.

    PubMed

    Bloxham, William H; Hennek, Jonathan W; Kumar, Ashok A; Whitesides, George M

    2015-07-21

    This paper describes a method of isolating small, highly accurate density-standard beads and characterizing their densities using accurate and experimentally traceable techniques. Density standards have a variety of applications, including the characterization of density gradients, which are used to separate objects in a variety of fields. Glass density-standard beads can be very accurate (±0.0001 g cm(-3)) but are too large (3-7 mm in diameter) for many applications. When smaller density standards are needed, commercial polymer microspheres are often used. These microspheres have standard deviations in density ranging from 0.006 to 0.021 g cm(-3); these distributions in density make these microspheres impractical for applications demanding small steps in density. In this paper, commercial microspheres are fractionated using aqueous multiphase systems (AMPS), aqueous mixture of polymers and salts that spontaneously separate into phases having molecularly sharp steps in density, to isolate microspheres having much narrower distributions in density (standard deviations from 0.0003 to 0.0008 g cm(-3)) than the original microspheres. By reducing the heterogeneity in densities, this method reduces the uncertainty in the density of any specific bead and, therefore, improves the accuracy within the limits of the calibration standards used to characterize the distributions in density.

  6. A Highly Accurate Face Recognition System Using Filtering Correlation

    NASA Astrophysics Data System (ADS)

    Watanabe, Eriko; Ishikawa, Sayuri; Kodate, Kashiko

    2007-09-01

    The authors previously constructed a highly accurate fast face recognition optical correlator (FARCO) [E. Watanabe and K. Kodate: Opt. Rev. 12 (2005) 460], and subsequently developed an improved, super high-speed FARCO (S-FARCO), which is able to process several hundred thousand frames per second. The principal advantage of our new system is its wide applicability to any correlation scheme. Three different configurations were proposed, each depending on correlation speed. This paper describes and evaluates a software correlation filter. The face recognition function proved highly accurate, seeing that a low-resolution facial image size (64 × 64 pixels) has been successfully implemented. An operation speed of less than 10 ms was achieved using a personal computer with a central processing unit (CPU) of 3 GHz and 2 GB memory. When we applied the software correlation filter to a high-security cellular phone face recognition system, experiments on 30 female students over a period of three months yielded low error rates: 0% false acceptance rate and 2% false rejection rate. Therefore, the filtering correlation works effectively when applied to low resolution images such as web-based images or faces captured by a monitoring camera.

  7. Accurate modeling of high-repetition rate ultrashort pulse amplification in optical fibers

    NASA Astrophysics Data System (ADS)

    Lindberg, Robert; Zeil, Peter; Malmström, Mikael; Laurell, Fredrik; Pasiskevicius, Valdas

    2016-10-01

    A numerical model for amplification of ultrashort pulses with high repetition rates in fiber amplifiers is presented. The pulse propagation is modeled by jointly solving the steady-state rate equations and the generalized nonlinear Schrödinger equation, which allows accurate treatment of nonlinear and dispersive effects whilst considering arbitrary spatial and spectral gain dependencies. Comparison of data acquired by using the developed model and experimental results prove to be in good agreement.

  8. Accurate modeling of high-repetition rate ultrashort pulse amplification in optical fibers

    PubMed Central

    Lindberg, Robert; Zeil, Peter; Malmström, Mikael; Laurell, Fredrik; Pasiskevicius, Valdas

    2016-01-01

    A numerical model for amplification of ultrashort pulses with high repetition rates in fiber amplifiers is presented. The pulse propagation is modeled by jointly solving the steady-state rate equations and the generalized nonlinear Schrödinger equation, which allows accurate treatment of nonlinear and dispersive effects whilst considering arbitrary spatial and spectral gain dependencies. Comparison of data acquired by using the developed model and experimental results prove to be in good agreement. PMID:27713496

  9. The highly accurate anteriolateral portal for injecting the knee

    PubMed Central

    2011-01-01

    Background The extended knee lateral midpatellar portal for intraarticular injection of the knee is accurate but is not practical for all patients. We hypothesized that a modified anteriolateral portal where the synovial membrane of the medial femoral condyle is the target would be highly accurate and effective for intraarticular injection of the knee. Methods 83 subjects with non-effusive osteoarthritis of the knee were randomized to intraarticular injection using the modified anteriolateral bent knee versus the standard lateral midpatellar portal. After hydrodissection of the synovial membrane with lidocaine using a mechanical syringe (reciprocating procedure device), 80 mg of triamcinolone acetonide were injected into the knee with a 2.0-in (5.1-cm) 21-gauge needle. Baseline pain, procedural pain, and pain at outcome (2 weeks and 6 months) were determined with the 10 cm Visual Analogue Pain Score (VAS). The accuracy of needle placement was determined by sonographic imaging. Results The lateral midpatellar and anteriolateral portals resulted in equivalent clinical outcomes including procedural pain (VAS midpatellar: 4.6 ± 3.1 cm; anteriolateral: 4.8 ± 3.2 cm; p = 0.77), pain at outcome (VAS midpatellar: 2.6 ± 2.8 cm; anteriolateral: 1.7 ± 2.3 cm; p = 0.11), responders (midpatellar: 45%; anteriolateral: 56%; p = 0.33), duration of therapeutic effect (midpatellar: 3.9 ± 2.4 months; anteriolateral: 4.1 ± 2.2 months; p = 0.69), and time to next procedure (midpatellar: 7.3 ± 3.3 months; anteriolateral: 7.7 ± 3.7 months; p = 0.71). The anteriolateral portal was 97% accurate by real-time ultrasound imaging. Conclusion The modified anteriolateral bent knee portal is an effective, accurate, and equivalent alternative to the standard lateral midpatellar portal for intraarticular injection of the knee. Trial Registration ClinicalTrials.gov: NCT00651625 PMID:21447197

  10. A highly accurate heuristic algorithm for the haplotype assembly problem

    PubMed Central

    2013-01-01

    Background Single nucleotide polymorphisms (SNPs) are the most common form of genetic variation in human DNA. The sequence of SNPs in each of the two copies of a given chromosome in a diploid organism is referred to as a haplotype. Haplotype information has many applications such as gene disease diagnoses, drug design, etc. The haplotype assembly problem is defined as follows: Given a set of fragments sequenced from the two copies of a chromosome of a single individual, and their locations in the chromosome, which can be pre-determined by aligning the fragments to a reference DNA sequence, the goal here is to reconstruct two haplotypes (h1, h2) from the input fragments. Existing algorithms do not work well when the error rate of fragments is high. Here we design an algorithm that can give accurate solutions, even if the error rate of fragments is high. Results We first give a dynamic programming algorithm that can give exact solutions to the haplotype assembly problem. The time complexity of the algorithm is O(n × 2t × t), where n is the number of SNPs, and t is the maximum coverage of a SNP site. The algorithm is slow when t is large. To solve the problem when t is large, we further propose a heuristic algorithm on the basis of the dynamic programming algorithm. Experiments show that our heuristic algorithm can give very accurate solutions. Conclusions We have tested our algorithm on a set of benchmark datasets. Experiments show that our algorithm can give very accurate solutions. It outperforms most of the existing programs when the error rate of the input fragments is high. PMID:23445458

  11. Pink-Beam, Highly-Accurate Compact Water Cooled Slits

    SciTech Connect

    Lyndaker, Aaron; Deyhim, Alex; Jayne, Richard; Waterman, Dave; Caletka, Dave; Steadman, Paul; Dhesi, Sarnjeet

    2007-01-19

    Advanced Design Consulting, Inc. (ADC) has designed accurate compact slits for applications where high precision is required. The system consists of vertical and horizontal slit mechanisms, a vacuum vessel which houses them, water cooling lines with vacuum guards connected to the individual blades, stepper motors with linear encoders, limit (home position) switches and electrical connections including internal wiring for a drain current measurement system. The total slit size is adjustable from 0 to 15 mm both vertically and horizontally. Each of the four blades are individually controlled and motorized. In this paper, a summary of the design and Finite Element Analysis of the system are presented.

  12. Highly Accurate Inverse Consistent Registration: A Robust Approach

    PubMed Central

    Reuter, Martin; Rosas, H. Diana; Fischl, Bruce

    2010-01-01

    The registration of images is a task that is at the core of many applications in computer vision. In computational neuroimaging where the automated segmentation of brain structures is frequently used to quantify change, a highly accurate registration is necessary for motion correction of images taken in the same session, or across time in longitudinal studies where changes in the images can be expected. This paper, inspired by Nestares and Heeger (2000), presents a method based on robust statistics to register images in the presence of differences, such as jaw movement, differential MR distortions and true anatomical change. The approach we present guarantees inverse consistency (symmetry), can deal with different intensity scales and automatically estimates a sensitivity parameter to detect outlier regions in the images. The resulting registrations are highly accurate due to their ability to ignore outlier regions and show superior robustness with respect to noise, to intensity scaling and outliers when compared to state-of-the-art registration tools such as FLIRT (in FSL) or the coregistration tool in SPM. PMID:20637289

  13. In pursuit of an accurate spatial and temporal model of biomolecules at the atomistic level: a perspective on computer simulation

    PubMed Central

    Gray, Alan; Harlen, Oliver G.; Harris, Sarah A.; Khalid, Syma; Leung, Yuk Ming; Lonsdale, Richard; Mulholland, Adrian J.; Pearson, Arwen R.; Read, Daniel J.; Richardson, Robin A.

    2015-01-01

    Despite huge advances in the computational techniques available for simulating biomolecules at the quantum-mechanical, atomistic and coarse-grained levels, there is still a widespread perception amongst the experimental community that these calculations are highly specialist and are not generally applicable by researchers outside the theoretical community. In this article, the successes and limitations of biomolecular simulation and the further developments that are likely in the near future are discussed. A brief overview is also provided of the experimental biophysical methods that are commonly used to probe biomolecular structure and dynamics, and the accuracy of the information that can be obtained from each is compared with that from modelling. It is concluded that progress towards an accurate spatial and temporal model of biomacromolecules requires a combination of all of these biophysical techniques, both experimental and computational. PMID:25615870

  14. Highly Accurate Calculations of the Phase Diagram of Cold Lithium

    NASA Astrophysics Data System (ADS)

    Shulenburger, Luke; Baczewski, Andrew

    The phase diagram of lithium is particularly complicated, exhibiting many different solid phases under the modest application of pressure. Experimental efforts to identify these phases using diamond anvil cells have been complemented by ab initio theory, primarily using density functional theory (DFT). Due to the multiplicity of crystal structures whose enthalpy is nearly degenerate and the uncertainty introduced by density functional approximations, we apply the highly accurate many-body diffusion Monte Carlo (DMC) method to the study of the solid phases at low temperature. These calculations span many different phases, including several with low symmetry, demonstrating the viability of DMC as a method for calculating phase diagrams for complex solids. Our results can be used as a benchmark to test the accuracy of various density functionals. This can strengthen confidence in DFT based predictions of more complex phenomena such as the anomalous melting behavior predicted for lithium at high pressures. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. DOE's National Nuclear Security Administration under contract DE-AC04-94AL85000.

  15. Efficient and accurate laser shaping with liquid crystal spatial light modulators

    SciTech Connect

    Maxson, Jared M.; Bartnik, Adam C.; Bazarov, Ivan V.

    2014-10-27

    A phase-only spatial light modulator (SLM) is capable of precise transverse laser shaping by either functioning as a variable phase grating or by serving as a variable mask via polarization rotation. As a phase grating, the highest accuracy algorithms, based on computer generated holograms (CGHs), have been shown to yield extended laser shapes with <10% rms error, but conversely little is known about the experimental efficiency of the method in general. In this work, we compare the experimental tradeoff between error and efficiency for both the best known CGH method and polarization rotation-based intensity masking when generating hard-edged flat top beams. We find that the masking method performs comparably with CGHs, both having rms error < 10% with efficiency > 15%. Informed by best practices for high efficiency from a SLM phase grating, we introduce an adaptive refractive algorithm which has high efficiency (92%) but also higher error (16%), for nearly cylindrically symmetric cases.

  16. Efficient and accurate laser shaping with liquid crystal spatial light modulators

    NASA Astrophysics Data System (ADS)

    Maxson, Jared M.; Bartnik, Adam C.; Bazarov, Ivan V.

    2014-10-01

    A phase-only spatial light modulator (SLM) is capable of precise transverse laser shaping by either functioning as a variable phase grating or by serving as a variable mask via polarization rotation. As a phase grating, the highest accuracy algorithms, based on computer generated holograms (CGHs), have been shown to yield extended laser shapes with <10% rms error, but conversely little is known about the experimental efficiency of the method in general. In this work, we compare the experimental tradeoff between error and efficiency for both the best known CGH method and polarization rotation-based intensity masking when generating hard-edged flat top beams. We find that the masking method performs comparably with CGHs, both having rms error < 10% with efficiency > 15%. Informed by best practices for high efficiency from a SLM phase grating, we introduce an adaptive refractive algorithm which has high efficiency (92%) but also higher error (16%), for nearly cylindrically symmetric cases.

  17. AUTOMATED, HIGHLY ACCURATE VERIFICATION OF RELAP5-3D

    SciTech Connect

    George L Mesina; David Aumiller; Francis Buschman

    2014-07-01

    Computer programs that analyze light water reactor safety solve complex systems of governing, closure and special process equations to model the underlying physics. In addition, these programs incorporate many other features and are quite large. RELAP5-3D[1] has over 300,000 lines of coding for physics, input, output, data management, user-interaction, and post-processing. For software quality assurance, the code must be verified and validated before being released to users. Verification ensures that a program is built right by checking that it meets its design specifications. Recently, there has been an increased importance on the development of automated verification processes that compare coding against its documented algorithms and equations and compares its calculations against analytical solutions and the method of manufactured solutions[2]. For the first time, the ability exists to ensure that the data transfer operations associated with timestep advancement/repeating and writing/reading a solution to a file have no unintended consequences. To ensure that the code performs as intended over its extensive list of applications, an automated and highly accurate verification method has been modified and applied to RELAP5-3D. Furthermore, mathematical analysis of the adequacy of the checks used in the comparisons is provided.

  18. Modelling the Constraints of Spatial Environment in Fauna Movement Simulations: Comparison of a Boundaries Accurate Function and a Cost Function

    NASA Astrophysics Data System (ADS)

    Jolivet, L.; Cohen, M.; Ruas, A.

    2015-08-01

    Landscape influences fauna movement at different levels, from habitat selection to choices of movements' direction. Our goal is to provide a development frame in order to test simulation functions for animal's movement. We describe our approach for such simulations and we compare two types of functions to calculate trajectories. To do so, we first modelled the role of landscape elements to differentiate between elements that facilitate movements and the ones being hindrances. Different influences are identified depending on landscape elements and on animal species. Knowledge were gathered from ecologists, literature and observation datasets. Second, we analysed the description of animal movement recorded with GPS at fine scale, corresponding to high temporal frequency and good location accuracy. Analysing this type of data provides information on the relation between landscape features and movements. We implemented an agent-based simulation approach to calculate potential trajectories constrained by the spatial environment and individual's behaviour. We tested two functions that consider space differently: one function takes into account the geometry and the types of landscape elements and one cost function sums up the spatial surroundings of an individual. Results highlight the fact that the cost function exaggerates the distances travelled by an individual and simplifies movement patterns. The geometry accurate function represents a good bottom-up approach for discovering interesting areas or obstacles for movements.

  19. A new algorithm for generating highly accurate benchmark solutions to transport test problems

    SciTech Connect

    Azmy, Y.Y.

    1997-06-01

    We present a new algorithm for solving the neutron transport equation in its discrete-variable form. The new algorithm is based on computing the full matrix relating the scalar flux spatial moments in all cells to the fixed neutron source spatial moments, foregoing the need to compute the angular flux spatial moments, and thereby eliminating the need for sweeping the spatial mesh in each discrete-angular direction. The matrix equation is solved exactly in test cases, producing a solution vector that is free from iteration convergence error, and subject only to truncation and roundoff errors. Our algorithm is designed to provide method developers with a quick and simple solution scheme to test their new methods on difficult test problems without the need to develop sophisticated solution techniques, e.g. acceleration, before establishing the worthiness of their innovation. We demonstrate the utility of the new algorithm by applying it to the Arbitrarily High Order Transport Nodal (AHOT-N) method, and using it to solve two of Burre`s Suite of Test Problems (BSTP). Our results provide highly accurate benchmark solutions, that can be distributed electronically and used to verify the pointwise accuracy of other solution methods and algorithms.

  20. A novel technique for highly accurate gas exchange measurements

    NASA Astrophysics Data System (ADS)

    Kalkenings, R. K.; Jähne, B. J.

    2003-04-01

    The Heidelberg Aeolotron is a circular wind-wave facility for investigating air-sea gas exchange. In this contribution a novel technique for measuring highly accurate transfer velocities k of mass transfer will be presented. Traditionally, in mass balance techniques the constant of decay for gas concentrations over time is measured. The major drawback of this concept is the long time constant. At low wind speeds and a water height greater than 1 m the period of observation has to be several days. In a gas-tight facility such as the Aeolotron, the transfer velocity k can be computed from the concentration in the water body and the change of concentration in the gas space. Owing to this fact, transfer velocities are gained while greatly reducing the measuring times to less than one hour. The transfer velocity k of a tracer can be parameterized as k=1/β \\cdot u_* \\cdot Sc^n, with the Schmidt Number Sc, shear velocity u_* and the dimensionless transfer resistance β. The Schmidt Number exponent n can be derived from simultaneous measurements of different tracers. Since these tracers are of different Schmidt number, the shear velocity is not needed. To allow for Schmidt numbers spanning a hole decade, in our experiments He, H_2, N_2O and F12 are used. The relative accuracy of measuring the transfer velocity was improved to less than 2%. In 9 consecutive experiments conducted at a wind speed of 6.2 m/s, the deviation of the Schmidt number exponent was found to be just under 0.02. This high accuracy will allow precisely determining the transition of the Schmidt number exponent from n=2/3 to n=0.5 from a flat to wavy water surface. In order to quantify gas exchange not only the wind speed is important. Surfactants have a pronounced effect on the wave field and lead to a drastic reduction in the transfer velocity. In the Aeolotron measurements were conducted with a variety of measuring devices, ranging from an imaging slope gauge (ISG) to thermal techniques with IR

  1. Hyperspectral imaging-based spatially-resolved technique for accurate measurement of the optical properties of horticultural products

    NASA Astrophysics Data System (ADS)

    Cen, Haiyan

    Hyperspectral imaging-based spatially-resolved technique is promising for determining the optical properties and quality attributes of horticultural and food products. However, considerable challenges still exist for accurate determination of spectral absorption and scattering properties from intact horticultural products. The objective of this research was, therefore, to develop and optimize hyperspectral imaging-based spatially-resolved technique for accurate measurement of the optical properties of horticultural products. Monte Carlo simulations and experiments for model samples of known optical properties were performed to optimize the inverse algorithm of a single-layer diffusion model and the optical designs, for extracting the absorption (micro a) and reduced scattering (micros') coefficients from spatially-resolved reflectance profiles. The logarithm and integral data transformation and the relative weighting methods were found to greatly improve the parameter estimation accuracy with the relative errors of 10.4%, 10.7%, and 11.4% for micro a, and 6.6%, 7.0%, and 7.1% for micros', respectively. More accurate measurements of optical properties were obtained when the light beam was of Gaussian type with the diameter of less than 1 mm, and the minimum and maximum source-detector distances were 1.5 mm and 10--20 transport mean free paths, respectively. An optical property measuring prototype was built, based on the optimization results, and evaluated for automatic measurement of absorption and reduced scattering coefficients for the wavelengths of 500--1,000 nm. The instrument was used to measure the optical properties, and assess quality/maturity, of 500 'Redstar' peaches and 1039 'Golden Delicious' (GD) and 1040 'Delicious' (RD) apples. A separate study was also conducted on confocal laser scanning and scanning electron microscopic image analysis and compression test of fruit tissue specimens to measure the structural and mechanical properties of 'Golden

  2. Accurate multi-source forest species mapping using the multiple spectral-spatial classification approach

    NASA Astrophysics Data System (ADS)

    Stavrakoudis, Dimitris; Gitas, Ioannis; Karydas, Christos; Kolokoussis, Polychronis; Karathanassi, Vassilia

    2015-10-01

    This paper proposes an efficient methodology for combining multiple remotely sensed imagery, in order to increase the classification accuracy in complex forest species mapping tasks. The proposed scheme follows a decision fusion approach, whereby each image is first classified separately by means of a pixel-wise Fuzzy-Output Support Vector Machine (FO-SVM) classifier. Subsequently, the multiple results are fused according to the so-called multiple spectral- spatial classifier using the minimum spanning forest (MSSC-MSF) approach, which constitutes an effective post-regularization procedure for enhancing the result of a single pixel-based classification. For this purpose, the original MSSC-MSF has been extended in order to handle multiple classifications. In particular, the fuzzy outputs of the pixel-based classifiers are stacked and used to grow the MSF, whereas the markers are also determined considering both classifications. The proposed methodology has been tested on a challenging forest species mapping task in northern Greece, considering a multispectral (GeoEye) and a hyper-spectral (CASI) image. The pixel-wise classifications resulted in overall accuracies (OA) of 68.71% for the GeoEye and 77.95% for the CASI images, respectively. Both of them are characterized by high levels of speckle noise. Applying the proposed multi-source MSSC-MSF fusion, the OA climbs to 90.86%, which is attributed both to the ability of MSSC-MSF to tackle the salt-and-pepper effect, as well as the fact that the fusion approach exploits the relative advantages of both information sources.

  3. In pursuit of an accurate spatial and temporal model of biomolecules at the atomistic level: a perspective on computer simulation

    SciTech Connect

    Gray, Alan; Harlen, Oliver G.; Harris, Sarah A.; Khalid, Syma; Leung, Yuk Ming; Lonsdale, Richard; Mulholland, Adrian J.; Pearson, Arwen R.; Read, Daniel J.; Richardson, Robin A.

    2015-01-01

    The current computational techniques available for biomolecular simulation are described, and the successes and limitations of each with reference to the experimental biophysical methods that they complement are presented. Despite huge advances in the computational techniques available for simulating biomolecules at the quantum-mechanical, atomistic and coarse-grained levels, there is still a widespread perception amongst the experimental community that these calculations are highly specialist and are not generally applicable by researchers outside the theoretical community. In this article, the successes and limitations of biomolecular simulation and the further developments that are likely in the near future are discussed. A brief overview is also provided of the experimental biophysical methods that are commonly used to probe biomolecular structure and dynamics, and the accuracy of the information that can be obtained from each is compared with that from modelling. It is concluded that progress towards an accurate spatial and temporal model of biomacromolecules requires a combination of all of these biophysical techniques, both experimental and computational.

  4. A highly accurate ab initio potential energy surface for methane

    NASA Astrophysics Data System (ADS)

    Owens, Alec; Yurchenko, Sergei N.; Yachmenev, Andrey; Tennyson, Jonathan; Thiel, Walter

    2016-09-01

    A new nine-dimensional potential energy surface (PES) for methane has been generated using state-of-the-art ab initio theory. The PES is based on explicitly correlated coupled cluster calculations with extrapolation to the complete basis set limit and incorporates a range of higher-level additive energy corrections. These include core-valence electron correlation, higher-order coupled cluster terms beyond perturbative triples, scalar relativistic effects, and the diagonal Born-Oppenheimer correction. Sub-wavenumber accuracy is achieved for the majority of experimentally known vibrational energy levels with the four fundamentals of 12CH4 reproduced with a root-mean-square error of 0.70 cm-1. The computed ab initio equilibrium C-H bond length is in excellent agreement with previous values despite pure rotational energies displaying minor systematic errors as J (rotational excitation) increases. It is shown that these errors can be significantly reduced by adjusting the equilibrium geometry. The PES represents the most accurate ab initio surface to date and will serve as a good starting point for empirical refinement.

  5. A highly accurate ab initio potential energy surface for methane.

    PubMed

    Owens, Alec; Yurchenko, Sergei N; Yachmenev, Andrey; Tennyson, Jonathan; Thiel, Walter

    2016-09-14

    A new nine-dimensional potential energy surface (PES) for methane has been generated using state-of-the-art ab initio theory. The PES is based on explicitly correlated coupled cluster calculations with extrapolation to the complete basis set limit and incorporates a range of higher-level additive energy corrections. These include core-valence electron correlation, higher-order coupled cluster terms beyond perturbative triples, scalar relativistic effects, and the diagonal Born-Oppenheimer correction. Sub-wavenumber accuracy is achieved for the majority of experimentally known vibrational energy levels with the four fundamentals of (12)CH4 reproduced with a root-mean-square error of 0.70 cm(-1). The computed ab initio equilibrium C-H bond length is in excellent agreement with previous values despite pure rotational energies displaying minor systematic errors as J (rotational excitation) increases. It is shown that these errors can be significantly reduced by adjusting the equilibrium geometry. The PES represents the most accurate ab initio surface to date and will serve as a good starting point for empirical refinement. PMID:27634258

  6. A highly accurate ab initio potential energy surface for methane.

    PubMed

    Owens, Alec; Yurchenko, Sergei N; Yachmenev, Andrey; Tennyson, Jonathan; Thiel, Walter

    2016-09-14

    A new nine-dimensional potential energy surface (PES) for methane has been generated using state-of-the-art ab initio theory. The PES is based on explicitly correlated coupled cluster calculations with extrapolation to the complete basis set limit and incorporates a range of higher-level additive energy corrections. These include core-valence electron correlation, higher-order coupled cluster terms beyond perturbative triples, scalar relativistic effects, and the diagonal Born-Oppenheimer correction. Sub-wavenumber accuracy is achieved for the majority of experimentally known vibrational energy levels with the four fundamentals of (12)CH4 reproduced with a root-mean-square error of 0.70 cm(-1). The computed ab initio equilibrium C-H bond length is in excellent agreement with previous values despite pure rotational energies displaying minor systematic errors as J (rotational excitation) increases. It is shown that these errors can be significantly reduced by adjusting the equilibrium geometry. The PES represents the most accurate ab initio surface to date and will serve as a good starting point for empirical refinement.

  7. Late enrichment maintains accurate recent and remote spatial memory only in aged rats that were unimpaired when middle aged.

    PubMed

    Fuchs, Fanny; Herbeaux, Karine; Aufrere, Noémie; Kelche, Christian; Mathis, Chantal; Barbelivien, Alexandra; Majchrzak, Monique

    2016-06-01

    Exposure of rodents to a stimulating environment has beneficial effects on some cognitive functions that are impaired during physiological aging, and especially spatial reference memory. The present study investigated whether environmental enrichment rescues these functions in already declining subjects and/or protects them from subsequent decline. Subgroups of 17-mo-old female rats with unimpaired versus impaired performance in a spatial reference memory task (Morris water maze) were housed until the age of 24 mo in standard or enriched environment. They were then trained in a second reference memory task, conducted in a different room than the first, and recent (1 d) and remote (10 d) memory were assessed. In unimpaired subgroups, spatial memory declined from 17 to 24 mo in rats housed in standard conditions; an enriched environment during this period allowed maintenance of accurate recent and remote spatial memory. At 24 mo, rats impaired at the age of 17 mo housed in enriched environment learned the task and displayed substantial recent memory, but their performance remained lower than that of unimpaired rats, showing that enrichment failed to rescue spatial memory in already cognitively declining rats. Controls indicated carryover effects of the first water maze training, especially in aged rats housed in standard condition, and confirmed the beneficial effect of enrichment on remote memory of aged rats even if they performed poorly than young adults housed for the same duration in standard or enriched condition.

  8. Accurate Event-Driven Motion Compensation in High-Resolution PET Incorporating Scattered and Random Events

    PubMed Central

    Dinelle, Katie; Cheng, Ju-Chieh; Shilov, Mikhail A.; Segars, William P.; Lidstone, Sarah C.; Blinder, Stephan; Rousset, Olivier G.; Vajihollahi, Hamid; Tsui, Benjamin M. W.; Wong, Dean F.; Sossi, Vesna

    2010-01-01

    With continuing improvements in spatial resolution of positron emission tomography (PET) scanners, small patient movements during PET imaging become a significant source of resolution degradation. This work develops and investigates a comprehensive formalism for accurate motion-compensated reconstruction which at the same time is very feasible in the context of high-resolution PET. In particular, this paper proposes an effective method to incorporate presence of scattered and random coincidences in the context of motion (which is similarly applicable to various other motion correction schemes). The overall reconstruction framework takes into consideration missing projection data which are not detected due to motion, and additionally, incorporates information from all detected events, including those which fall outside the field-of-view following motion correction. The proposed approach has been extensively validated using phantom experiments as well as realistic simulations of a new mathematical brain phantom developed in this work, and the results for a dynamic patient study are also presented. PMID:18672420

  9. Spatially revolved high density electroencephalography

    NASA Astrophysics Data System (ADS)

    Wu, Jerry; Szu, Harold; Chen, Yuechen; Guo, Ran; Gu, Xixi

    2015-05-01

    Electroencephalography (EEG) measures voltage fluctuations resulting from ionic current flows within the neurons of the brain. In practice, EEG refers to the recording of the brain's spontaneous electrical activity over a short period of time, several tens of minutes, as recorded from multiple electrodes placed on the scalp. In order to improve the resolution and the distortion cause by the hair and scalp, large array magnetoencephalography (MEG) systems are introduced. The major challenge is to systematically compare the accuracy of epileptic source localization with high electrode density to that obtained with sparser electrode setups. In this report, we demonstrate a two dimension (2D) image Fast Fourier Transform (FFT) analysis along with utilization of Peano (space-filling) curve to further reduce the hardware requirement for high density EEG and improve the accuracy and performance of the high density EEG analysis. The brain-computer interfaces (BCIs) in this work is enhanced by A field-programmable gate array (FPGA) board with optimized two dimension (2D) image Fast Fourier Transform (FFT) analysis.

  10. Highly accurate boronimeter assay of concentrated boric acid solutions

    SciTech Connect

    Ball, R.M. )

    1992-01-01

    The Random-Walk Boronimeter has successfully been used as an on-line indicator of boric acid concentration in an operating commercial pressurized water reactor. The principle has been adapted for measurement of discrete samples to high accuracy and to concentrations up to 6000 ppm natural boron in light water. Boric acid concentration in an aqueous solution is a necessary measurement in many nuclear power plants, particularly those that use boric acid dissolved in the reactor coolant as a reactivity control system. Other nuclear plants use a high-concentration boric acid solution as a backup shutdown system. Such a shutdown system depends on rapid injection of the solution and frequent surveillance of the fluid to ensure the presence of the neutron absorber. The two methods typically used to measure boric acid are the chemical and the physical methods. The chemical method uses titration to determine the ionic concentration of the BO[sub 3] ions and infers the boron concentration. The physical method uses the attenuation of neutrons by the solution and infers the boron concentration from the neutron absorption properties. This paper describes the Random-Walk Boronimeter configured to measure discrete samples to high accuracy and high concentration.

  11. An accurate continuous calibration system for high voltage current transformer

    NASA Astrophysics Data System (ADS)

    Tong, Yue; Li, Bin Hong

    2011-02-01

    A continuous calibration system for high voltage current transformers is presented in this paper. The sensor of this system is based on a kind of electronic instrument current transformer, which is a clamp-shape air core coil. This system uses an optical fiber transmission system for its signal transmission and power supply. Finally the digital integrator and fourth-order convolution window algorithm as error calculation methods are realized by the virtual instrument with a personal computer. It is found that this system can calibrate a high voltage current transformer while energized, which means avoiding a long calibrating period in the power system and the loss of power metering expense. At the same time, it has a wide dynamic range and frequency band, and it can achieve a high accuracy measurement in a complex electromagnetic field environment. The experimental results and the on-site operation results presented in the last part of the paper, prove that it can reach the 0.05 accuracy class and is easy to operate on site.

  12. Highly Accurate Photogrammetric Measurements of the Planck Reflectors

    NASA Astrophysics Data System (ADS)

    Amiri Parian, J.; Gruen, Armin; Cozzani, Alessandro

    2006-06-01

    The Planck mission of the European Space Agency (ESA) is designed to image the anisotropies of the Cosmic Background Radiation Field over the whole sky. To achieve this aim, sophisticated reflectors are used as part of the Planck telescope receiving system. The system consists of secondary and primary reflectors which are sections of two different ellipsoids of revolution with mean diameters of 1 and 1.6 meters. Deformations of the reflectors which influence the optical parameters and the gain of receiving signals are investigated in vacuum and at very low temperatures. For this investigation, among the various high accuracy measurement techniques, photogrammetry was selected. With respect to the photogrammetric measurements, special considerations had to be taken into account in design steps, measurement arrangement and data processing to achieve very high accuracies. The determinability of additional parameters of the camera under the given network configuration, datum definition, reliability and precision issues as well as workspace limits and propagating errors from different sources are considered. We have designed an optimal photogrammetric network by heuristic simulation for the flight model of the primary and the secondary reflectors with relative precisions better than 1:1000000 and 1:400000 to achieve the requested accuracies. A least squares best fit ellipsoid method was developed to determine the optical parameters of the reflectors. In this paper we will report about the procedures, the network design and the results of real measurements.

  13. Highly accurate adaptive finite element schemes for nonlinear hyperbolic problems

    NASA Astrophysics Data System (ADS)

    Oden, J. T.

    1992-08-01

    This document is a final report of research activities supported under General Contract DAAL03-89-K-0120 between the Army Research Office and the University of Texas at Austin from July 1, 1989 through June 30, 1992. The project supported several Ph.D. students over the contract period, two of which are scheduled to complete dissertations during the 1992-93 academic year. Research results produced during the course of this effort led to 6 journal articles, 5 research reports, 4 conference papers and presentations, 1 book chapter, and two dissertations (nearing completion). It is felt that several significant advances were made during the course of this project that should have an impact on the field of numerical analysis of wave phenomena. These include the development of high-order, adaptive, hp-finite element methods for elastodynamic calculations and high-order schemes for linear and nonlinear hyperbolic systems. Also, a theory of multi-stage Taylor-Galerkin schemes was developed and implemented in the analysis of several wave propagation problems, and was configured within a general hp-adaptive strategy for these types of problems. Further details on research results and on areas requiring additional study are given in the Appendix.

  14. High Spatial Resolution Thermal Satellite Technologies

    NASA Technical Reports Server (NTRS)

    Ryan, Robert

    2003-01-01

    This document in the form of viewslides, reviews various low-cost alternatives to high spatial resolution thermal satellite technologies. There exists no follow-on to Landsat 7 or ASTER high spatial resolution thermal systems. This document reviews the results of the investigation in to the use of new technologies to create a low-cost useful alternative. Three suggested technologies are examined. 1. Conventional microbolometer pushbroom modes offers potential for low cost Landsat Data Continuity Mission (LDCM) thermal or ASTER capability with at least 60-120 ground sampling distance (GSD). 2. Backscanning could produce MultiSpectral Thermal Imager performance without cooled detectors. 3. Cooled detector could produce hyperspectral thermal class system or extremely high spatial resolution class instrument.

  15. Factors affecting the accurate determination of cerebrovascular blood flow using high-speed droplet imaging

    NASA Astrophysics Data System (ADS)

    Rudin, Stephen; Divani, Afshin; Wakhloo, Ajay K.; Lieber, Baruch B.; Granger, William; Bednarek, Daniel R.; Yang, Chang-Ying J.

    1998-07-01

    Detailed cerebrovascular blood flow can be more accurately determined radiographically from the new droplet tracking method previously introduced by the authors than from standard soluble contrast techniques. For example, arteriovenous malformation (AVM) transit times which are crucial for proper glue embolization treatments, were shown to be about half when using droplets compared to those measured using soluble contrast techniques. In this work, factors such as x-ray pulse duration, frame rate, system spatial resolution (focal spot size), droplet size, droplet and system contrast parameters, and system noise are considered in relation to their affect on the accurate determination of droplet location and velocity.

  16. Accurate memory for object location by individuals with intellectual disability: absolute spatial tagging instead of configural processing?

    PubMed

    Giuliani, Fabienne; Favrod, Jérôme; Grasset, François; Schenk, Françoise

    2011-01-01

    Using head-mounted eye tracker material, we assessed spatial recognition abilities (e.g., reaction to object permutation, removal or replacement with a new object) in participants with intellectual disabilities. The "Intellectual Disabilities (ID)" group (n = 40) obtained a score totalling a 93.7% success rate, whereas the "Normal Control" group (n = 40) scored 55.6% and took longer to fix their attention on the displaced object. The participants with an intellectual disability thus had a more accurate perception of spatial changes than controls. Interestingly, the ID participants were more reactive to object displacement than to removal of the object. In the specific test of novelty detection, however, the scores were similar, the two groups approaching 100% detection. Analysis of the strategies expressed by the ID group revealed that they engaged in more systematic object checking and were more sensitive than the control group to changes in the structure of the environment. Indeed, during the familiarisation phase, the "ID" group explored the collection of objects more slowly, and fixed their gaze for a longer time upon a significantly lower number of fixation points during visual sweeping. PMID:21353464

  17. Development of highly accurate approximate scheme for computing the charge transfer integral.

    PubMed

    Pershin, Anton; Szalay, Péter G

    2015-08-21

    The charge transfer integral is a key parameter required by various theoretical models to describe charge transport properties, e.g., in organic semiconductors. The accuracy of this important property depends on several factors, which include the level of electronic structure theory and internal simplifications of the applied formalism. The goal of this paper is to identify the performance of various approximate approaches of the latter category, while using the high level equation-of-motion coupled cluster theory for the electronic structure. The calculations have been performed on the ethylene dimer as one of the simplest model systems. By studying different spatial perturbations, it was shown that while both energy split in dimer and fragment charge difference methods are equivalent with the exact formulation for symmetrical displacements, they are less efficient when describing transfer integral along the asymmetric alteration coordinate. Since the "exact" scheme was found computationally expensive, we examine the possibility to obtain the asymmetric fluctuation of the transfer integral by a Taylor expansion along the coordinate space. By exploring the efficiency of this novel approach, we show that the Taylor expansion scheme represents an attractive alternative to the "exact" calculations due to a substantial reduction of computational costs, when a considerably large region of the potential energy surface is of interest. Moreover, we show that the Taylor expansion scheme, irrespective of the dimer symmetry, is very accurate for the entire range of geometry fluctuations that cover the space the molecule accesses at room temperature. PMID:26298117

  18. Development of highly accurate approximate scheme for computing the charge transfer integral

    SciTech Connect

    Pershin, Anton; Szalay, Péter G.

    2015-08-21

    The charge transfer integral is a key parameter required by various theoretical models to describe charge transport properties, e.g., in organic semiconductors. The accuracy of this important property depends on several factors, which include the level of electronic structure theory and internal simplifications of the applied formalism. The goal of this paper is to identify the performance of various approximate approaches of the latter category, while using the high level equation-of-motion coupled cluster theory for the electronic structure. The calculations have been performed on the ethylene dimer as one of the simplest model systems. By studying different spatial perturbations, it was shown that while both energy split in dimer and fragment charge difference methods are equivalent with the exact formulation for symmetrical displacements, they are less efficient when describing transfer integral along the asymmetric alteration coordinate. Since the “exact” scheme was found computationally expensive, we examine the possibility to obtain the asymmetric fluctuation of the transfer integral by a Taylor expansion along the coordinate space. By exploring the efficiency of this novel approach, we show that the Taylor expansion scheme represents an attractive alternative to the “exact” calculations due to a substantial reduction of computational costs, when a considerably large region of the potential energy surface is of interest. Moreover, we show that the Taylor expansion scheme, irrespective of the dimer symmetry, is very accurate for the entire range of geometry fluctuations that cover the space the molecule accesses at room temperature.

  19. Highly accurate isotope measurements of surface material on planetary objects in situ

    NASA Astrophysics Data System (ADS)

    Riedo, Andreas; Neuland, Maike; Meyer, Stefan; Tulej, Marek; Wurz, Peter

    2013-04-01

    Studies of isotope variations in solar system objects are of particular interest and importance. Highly accurate isotope measurements provide insight into geochemical processes, constrain the time of formation of planetary material (crystallization ages) and can be robust tracers of pre-solar events and processes. A detailed understanding of the chronology of the early solar system and dating of planetary materials require precise and accurate measurements of isotope ratios, e.g. lead, and abundance of trace element. However, such measurements are extremely challenging and until now, they never have been attempted in space research. Our group designed a highly miniaturized and self-optimizing laser ablation time-of-flight mass spectrometer for space flight for sensitive and accurate measurements of the elemental and isotopic composition of extraterrestrial materials in situ. Current studies were performed by using UV radiation for ablation and ionization of sample material. High spatial resolution is achieved by focusing the laser beam to about Ø 20μm onto the sample surface. The instrument supports a dynamic range of at least 8 orders of magnitude and a mass resolution m/Δm of up to 800—900, measured at iron peak. We developed a measurement procedure, which will be discussed in detail, that allows for the first time to measure with the instrument the isotope distribution of elements, e.g. Ti, Pb, etc., with a measurement accuracy and precision in the per mill and sub per mill level, which is comparable to well-known and accepted measurement techniques, such as TIMS, SIMS and LA-ICP-MS. The present instrument performance offers together with the measurement procedure in situ measurements of 207Pb/206Pb ages with the accuracy for age in the range of tens of millions of years. Furthermore, and in contrast to other space instrumentation, our instrument can measure all elements present in the sample above 10 ppb concentration, which offers versatile applications

  20. Navier-Stokes simulations of blade-vortex interaction using high-order accurate upwind schemes

    NASA Technical Reports Server (NTRS)

    Rai, Man Mohan

    1987-01-01

    Conventional, spatially second-order-accurate, finite-difference schemes are much too dissipative for calculations involving vortices that travel large distances (relative to some measure of the size of the vortex). This study presents a fifth-order-accurate upwind-biased scheme that preserves vortex structure for much longer times than existing second-order-accurate central and upwind difference schemes. Vortex calculations demonstrating this aspect of the fifth-order scheme are also presented. The method is then applied to the blade-vortex interaction problem. Results for strong interactions wherein the vortex impinges directly on the airfoil or a shock associated with the airfoil are presented. None of these calculations required any modeling of the shape, size, and trajectory of the interacting vortex.

  1. Individual Differences in Spatial Text Processing: High Spatial Ability Can Compensate for Spatial Working Memory Interference

    ERIC Educational Resources Information Center

    Meneghetti, Chiara; Gyselinck, Valerie; Pazzaglia, Francesca; De Beni, Rossana

    2009-01-01

    The present study investigates the relation between spatial ability and visuo-spatial and verbal working memory in spatial text processing. In two experiments, participants listened to a spatial text (Experiments 1 and 2) and a non-spatial text (Experiment 1), at the same time performing a spatial or a verbal concurrent task, or no secondary task.…

  2. Radiometric and Spatial Characterization of High-Spatial Resolution Sensors

    NASA Technical Reports Server (NTRS)

    Thome, Kurtis; Zanoni, Vicki (Technical Monitor)

    2002-01-01

    The development and improvement of commercial hyperspatial sensors in recent years has increased the breadth of information that can be retrieved from spaceborne and airborne imagery. NASA, through it's Scientific Data Purchases, has successfully provided such data sets to its user community. A key element to the usefulness of these data are an understanding of the radiometric and spatial response quality of the imagery. This proposal seeks funding to examine the absolute radiometric calibration of the Ikonos sensor operated by Space Imaging and the recently-launched Quickbird sensor from DigitalGlobe. In addition, we propose to evaluate the spatial response of the two sensors. The proposed methods rely on well-understood, ground-based targets that have been used by the University of Arizona for more than a decade.

  3. Laryngeal High-Speed Videoendoscopy: Rationale and Recommendation for Accurate and Consistent Terminology

    ERIC Educational Resources Information Center

    Deliyski, Dimitar D.; Hillman, Robert E.; Mehta, Daryush D.

    2015-01-01

    Purpose: The authors discuss the rationale behind the term "laryngeal high-speed videoendoscopy" to describe the application of high-speed endoscopic imaging techniques to the visualization of vocal fold vibration. Method: Commentary on the advantages of using accurate and consistent terminology in the field of voice research is…

  4. Improved Spatial Filter for high power Lasers

    SciTech Connect

    Estabrook, Kent G.; Celliers, Peter M.; Murray, James E.; DaSilva, Luiz; MacGowan, Brian J.; Rubenchik, Alexander M.; Manes, Kenneth R.; Drake, Robert P.; Afeyan, Bedros

    1998-06-01

    A new pinhole architecture incorporates features intended to reduce the rate of plasma generation in a spatial filter for high-energy laser pulse beams. An elongated pinhole aperture is provided in an apertured body for rejecting off-axis rays of the laser pulse beam. The internal surface of the elongated aperture has a diameter which progressively tapers from a larger entrance cross-sectional area at an inlet to a smaller output cross-sectional area at an outlet. The tapered internal surface causes off-axis rays to be refracted in a low density plasma layer that forms on the internal surface or specularly reflected at grazing incidence from the internal surface. Off-axis rays of the high-energy pulse beam are rejected by this design. The external surface of the apertured body adjacent to the larger entrance cross-sectional area at the inlet to the elongated aperture is angled obliquely with respect to the to direction of the path of the high-energy laser pulse beam to backscatter off-axis rays away from the high-energy pulse beam. The aperture is formed as a truncated cone or alternatively with a tapered square cross-section. The internal surface of the aperture is coated with an ablative material, preferably high-density material which can be deposited with an exploding wire.

  5. An accurate dynamical electron diffraction algorithm for reflection high-energy electron diffraction

    NASA Astrophysics Data System (ADS)

    Huang, J.; Cai, C. Y.; Lv, C. L.; Zhou, G. W.; Wang, Y. G.

    2015-12-01

    The conventional multislice method (CMS) method, one of the most popular dynamical electron diffraction calculation procedures in transmission electron microscopy, was introduced to calculate reflection high-energy electron diffraction (RHEED) as it is well adapted to deal with the deviations from the periodicity in the direction parallel to the surface. However, in the present work, we show that the CMS method is no longer sufficiently accurate for simulating RHEED with the accelerating voltage 3-100 kV because of the high-energy approximation. An accurate multislice (AMS) method can be an alternative for more accurate RHEED calculations with reasonable computing time. A detailed comparison of the numerical calculation of the AMS method and the CMS method is carried out with respect to different accelerating voltages, surface structure models, Debye-Waller factors and glancing angles.

  6. High Spatial Resolution Spectroscopy of Semiconductor Nanostructures

    NASA Astrophysics Data System (ADS)

    Harris, Timothy D.; Gershoni, David; Pfeiffer, Loren N.

    1996-03-01

    Several recent reports employing high spatial resolution have revealed the dominance of exciton localization in the low temperature luminescence of semiconductor quantum structures.^[1-3] Understanding this localization is of critical importance for the reliable studies of low dimensional structures such as quantum wells, quantum wires and quantum dots. We report on low temperature and high spatial resolution photoluminescence and photoluminescence excitation studies of cleaved edge overgrown (CEO) single quantum wires. These samples permit the direct and unambiguous comparison between the optical properties of a (100) oriented quantum well, a (110) oriented quantum well, and the quantum wire which is formed at their intersection. Using low temperature near field optical spectroscopy, and a novel diffraction limited far field apparatus, we determine the carrier diffusion length dependence on pump wavelength and sample temperature in both the 2d systems and the genuinely 1D wire system. We also measure the absorption strength of the 1D system and find it to be a factor of 3 stronger than the absorption of the associated 2D systems.^[2] Using low temperature near field optical spectroscopy, and a novel diffraction limited far field apparatus, we also determine the carrier diffusion length dependence on pump wavelength and sample temperature. ^[1] H. F. Hess, E. Betzig, T. D. Harris, L. N. Pfeiffer, and K. W. West, Science 264, 1740 (1994). ^[2] T. D. Harris, D. Gershoni, R. D. Grober, L. Pfeiffer, K. West, and N. Chand, Appl. Phys. Lett, in press (1996) ^[3] D. Gammon, E. S. Snow, and D. S. Katzer, Appl. Phys. Lett. 67, 2391 (1995)

  7. Highly accurate SNR measurement using the covariance of two SEM images with the identical view.

    PubMed

    Oho, Eisaku; Suzuki, Kazuhiko

    2012-01-01

    Quality of an SEM image is strongly influenced by the extent of noise. As a well-known method in the field of SEM, the covariance is applied to measure the signal-to-noise ratio (SNR). This method has potential ability for highly accurate measurement of the SNR, which is hardly known until now. If the precautions discussed in this article are adopted, that method can demonstrate its real ability. These precautions are strongly related to "proper acquisition of two images with the identical view," "alignment of an aperture diaphragm," "reduction of charging phenomena," "elimination of particular noises," and "accurate focusing," As necessary, characteristics in SEM signal and noise are investigated from a few standpoints. When using the maximum performance of this measurement, SNR of many SEM images obtained in a variety of the SEM operating conditions and specimens can be measured accurately.

  8. Robust High-Resolution Cloth Using Parallelism, History-Based Collisions and Accurate Friction

    PubMed Central

    Selle, Andrew; Su, Jonathan; Irving, Geoffrey; Fedkiw, Ronald

    2015-01-01

    In this paper we simulate high resolution cloth consisting of up to 2 million triangles which allows us to achieve highly detailed folds and wrinkles. Since the level of detail is also influenced by object collision and self collision, we propose a more accurate model for cloth-object friction. We also propose a robust history-based repulsion/collision framework where repulsions are treated accurately and efficiently on a per time step basis. Distributed memory parallelism is used for both time evolution and collisions and we specifically address Gauss-Seidel ordering of repulsion/collision response. This algorithm is demonstrated by several high-resolution and high-fidelity simulations. PMID:19147895

  9. CgWind: A high-order accurate simulation tool for wind turbines and wind farms

    SciTech Connect

    Chand, K K; Henshaw, W D; Lundquist, K A; Singer, M A

    2010-02-22

    CgWind is a high-fidelity large eddy simulation (LES) tool designed to meet the modeling needs of wind turbine and wind park engineers. This tool combines several advanced computational technologies in order to model accurately the complex and dynamic nature of wind energy applications. The composite grid approach provides high-quality structured grids for the efficient implementation of high-order accurate discretizations of the incompressible Navier-Stokes equations. Composite grids also provide a natural mechanism for modeling bodies in relative motion and complex geometry. Advanced algorithms such as matrix-free multigrid, compact discretizations and approximate factorization will allow CgWind to perform highly resolved calculations efficiently on a wide class of computing resources. Also in development are nonlinear LES subgrid-scale models required to simulate the many interacting scales present in large wind turbine applications. This paper outlines our approach, the current status of CgWind and future development plans.

  10. A parallel high-order accurate finite element nonlinear Stokes ice sheet model and benchmark experiments

    SciTech Connect

    Leng, Wei; Ju, Lili; Gunzburger, Max; Price, Stephen; Ringler, Todd

    2012-01-01

    The numerical modeling of glacier and ice sheet evolution is a subject of growing interest, in part because of the potential for models to inform estimates of global sea level change. This paper focuses on the development of a numerical model that determines the velocity and pressure fields within an ice sheet. Our numerical model features a high-fidelity mathematical model involving the nonlinear Stokes system and combinations of no-sliding and sliding basal boundary conditions, high-order accurate finite element discretizations based on variable resolution grids, and highly scalable parallel solution strategies, all of which contribute to a numerical model that can achieve accurate velocity and pressure approximations in a highly efficient manner. We demonstrate the accuracy and efficiency of our model by analytical solution tests, established ice sheet benchmark experiments, and comparisons with other well-established ice sheet models.

  11. A time accurate finite volume high resolution scheme for three dimensional Navier-Stokes equations

    NASA Technical Reports Server (NTRS)

    Liou, Meng-Sing; Hsu, Andrew T.

    1989-01-01

    A time accurate, three-dimensional, finite volume, high resolution scheme for solving the compressible full Navier-Stokes equations is presented. The present derivation is based on the upwind split formulas, specifically with the application of Roe's (1981) flux difference splitting. A high-order accurate (up to the third order) upwind interpolation formula for the inviscid terms is derived to account for nonuniform meshes. For the viscous terms, discretizations consistent with the finite volume concept are described. A variant of second-order time accurate method is proposed that utilizes identical procedures in both the predictor and corrector steps. Avoiding the definition of midpoint gives a consistent and easy procedure, in the framework of finite volume discretization, for treating viscous transport terms in the curvilinear coordinates. For the boundary cells, a new treatment is introduced that not only avoids the use of 'ghost cells' and the associated problems, but also satisfies the tangency conditions exactly and allows easy definition of viscous transport terms at the first interface next to the boundary cells. Numerical tests of steady and unsteady high speed flows show that the present scheme gives accurate solutions.

  12. A High-Order Accurate Parallel Solver for Maxwell's Equations on Overlapping Grids

    SciTech Connect

    Henshaw, W D

    2005-09-23

    A scheme for the solution of the time dependent Maxwell's equations on composite overlapping grids is described. The method uses high-order accurate approximations in space and time for Maxwell's equations written as a second-order vector wave equation. High-order accurate symmetric difference approximations to the generalized Laplace operator are constructed for curvilinear component grids. The modified equation approach is used to develop high-order accurate approximations that only use three time levels and have the same time-stepping restriction as the second-order scheme. Discrete boundary conditions for perfect electrical conductors and for material interfaces are developed and analyzed. The implementation is optimized for component grids that are Cartesian, resulting in a fast and efficient method. The solver runs on parallel machines with each component grid distributed across one or more processors. Numerical results in two- and three-dimensions are presented for the fourth-order accurate version of the method. These results demonstrate the accuracy and efficiency of the approach.

  13. Highly accurate spectral retardance characterization of a liquid crystal retarder including Fabry-Perot interference effects

    SciTech Connect

    Vargas, Asticio; Mar Sánchez-López, María del; García-Martínez, Pascuala; Arias, Julia; Moreno, Ignacio

    2014-01-21

    Multiple-beam Fabry-Perot (FP) interferences occur in liquid crystal retarders (LCR) devoid of an antireflective coating. In this work, a highly accurate method to obtain the spectral retardance of such devices is presented. On the basis of a simple model of the LCR that includes FP effects and by using a voltage transfer function, we show how the FP features in the transmission spectrum can be used to accurately retrieve the ordinary and extraordinary spectral phase delays, and the voltage dependence of the latter. As a consequence, the modulation characteristics of the device are fully determined with high accuracy by means of a few off-state physical parameters which are wavelength-dependent, and a single voltage transfer function that is valid within the spectral range of characterization.

  14. Optimal monotonization of a high-order accurate bicompact scheme for the nonstationary multidimensional transport equation

    NASA Astrophysics Data System (ADS)

    Aristova, E. N.; Rogov, B. V.; Chikitkin, A. V.

    2016-06-01

    A hybrid scheme is proposed for solving the nonstationary inhomogeneous transport equation. The hybridization procedure is based on two baseline schemes: (1) a bicompact one that is fourth-order accurate in all space variables and third-order accurate in time and (2) a monotone first-order accurate scheme from the family of short characteristic methods with interpolation over illuminated faces. It is shown that the first-order accurate scheme has minimal dissipation, so it is called optimal. The solution of the hybrid scheme depends locally on the solutions of the baseline schemes at each node of the space-time grid. A monotonization procedure is constructed continuously and uniformly in all mesh cells so as to keep fourth-order accuracy in space and third-order accuracy in time in domains where the solution is smooth, while maintaining a high level of accuracy in domains of discontinuous solution. Due to its logical simplicity and uniformity, the algorithm is well suited for supercomputer simulation.

  15. A time-accurate high-resolution TVD scheme for solving the Navier-Stokes equations

    NASA Technical Reports Server (NTRS)

    Kim, Hyun Dae; Liu, Nan-Suey

    1992-01-01

    A total variation diminishing (TVD) scheme has been developed and incorporated into an existing time-accurate high-resolution Navier-Stokes code. The accuracy and the robustness of the resulting solution procedure have been assessed by performing many calculations in four different areas: shock tube flows, regular shock reflection, supersonic boundary layer, and shock boundary layer interactions. These numerical results compare well with corresponding exact solutions or experimental data.

  16. A time-accurate high-resolution TVD scheme for solving the Navier-Stokes equations

    NASA Technical Reports Server (NTRS)

    Kim, Hyun D.; Liu, Nan-Suey

    1993-01-01

    A total variation diminishing (TVD) scheme has been developed and incorporated into an existing time-accurate high-resolution Navier-Stokes code. The accuracy and the robustness of the resulting solution procedure have been assessed by performing many calculations in four different areas: shock tube flows, regular shock reflection, supersonic boundary layer, and shock boundary layer interactions. These numerical results compare well with corresponding exact solutions or experimental data.

  17. Late Enrichment Maintains Accurate Recent and Remote Spatial Memory Only in Aged Rats That Were Unimpaired When Middle Aged

    ERIC Educational Resources Information Center

    Fuchs, Fanny; Herbeaux, Karine; Aufrere, Noémie; Kelche, Christian; Mathis, Chantal; Barbelivien, Alexandra; Majchrzak, Monique

    2016-01-01

    Exposure of rodents to a stimulating environment has beneficial effects on some cognitive functions that are impaired during physiological aging, and especially spatial reference memory. The present study investigated whether environmental enrichment rescues these functions in already declining subjects and/or protects them from subsequent…

  18. Accurate Memory for Object Location by Individuals with Intellectual Disability: Absolute Spatial Tagging Instead of Configural Processing?

    ERIC Educational Resources Information Center

    Giuliani, Fabienne; Favrod, Jerome; Grasset, Francois; Schenk, Francoise

    2011-01-01

    Using head-mounted eye tracker material, we assessed spatial recognition abilities (e.g., reaction to object permutation, removal or replacement with a new object) in participants with intellectual disabilities. The "Intellectual Disabilities (ID)" group (n = 40) obtained a score totalling a 93.7% success rate, whereas the "Normal Control" group…

  19. A highly accurate method for determination of dissolved oxygen: gravimetric Winkler method.

    PubMed

    Helm, Irja; Jalukse, Lauri; Leito, Ivo

    2012-09-01

    A high-accuracy Winkler titration method has been developed for determination of dissolved oxygen concentration. Careful analysis of uncertainty sources relevant to the Winkler method was carried out and the method was optimized for minimizing all uncertainty sources as far as practical. The most important improvements were: gravimetric measurement of all solutions, pre-titration to minimize the effect of iodine volatilization, accurate amperometric end point detection and careful accounting for dissolved oxygen in the reagents. As a result, the developed method is possibly the most accurate method of determination of dissolved oxygen available. Depending on measurement conditions and on the dissolved oxygen concentration the combined standard uncertainties of the method are in the range of 0.012-0.018 mg dm(-3) corresponding to the k=2 expanded uncertainty in the range of 0.023-0.035 mg dm(-3) (0.27-0.38%, relative). This development enables more accurate calibration of electrochemical and optical dissolved oxygen sensors for routine analysis than has been possible before.

  20. Defining allowable physical property variations for high accurate measurements on polymer parts

    NASA Astrophysics Data System (ADS)

    Mohammadi, A.; Sonne, M. R.; Madruga, D. G.; De Chiffre, L.; Hattel, J. H.

    2016-06-01

    Measurement conditions and material properties have a significant impact on the dimensions of a part, especially for polymers parts. Temperature variation causes part deformations that increase the uncertainty of the measurement process. Current industrial tolerances of a few micrometres demand high accurate measurements in non-controlled ambient. Most of polymer parts are manufactured by injection moulding and their inspection is carried out after stabilization, around 200 hours. The overall goal of this work is to reach ±5μm in uncertainty measurements a polymer products which is a challenge in today`s production and metrology environments. The residual deformations in polymer products at room temperature after injection molding are important when micrometer accuracy needs to be achieved. Numerical modelling can give a valuable insight to what is happening in the polymer during cooling down after injection molding. In order to obtain accurate simulations, accurate inputs to the model are crucial. In reality however, the material and physical properties will have some variations. Although these variations may be small, they can act as a source of uncertainty for the measurement. In this paper, we investigated how big the variation in material and physical properties are allowed in order to reach the 5 μm target on the uncertainty.

  1. The Use of Accurate Mass Tags for High-Throughput Microbial Proteomics

    SciTech Connect

    Smith, Richard D. ); Anderson, Gordon A. ); Lipton, Mary S. ); Masselon, Christophe D. ); Pasa Tolic, Ljiljana ); Shen, Yufeng ); Udseth, Harold R. )

    2002-08-01

    We describe and demonstrate a global strategy that extends the sensitivity, dynamic range, comprehensiveness, and throughput of proteomic measurements based upon the use of peptide accurate mass tags (AMTs) produced by global protein enzymatic digestion. The two-stage strategy exploits Fourier transform-ion cyclotron resonance (FT-ICR) mass spectrometry to validate peptide AMTs for a specific organism, tissue or cell type from potential mass tags identified using conventional tandem mass spectrometry (MS/MS) methods, providing greater confidence in identifications as well as the basis for subsequent measurements without the need for MS/MS, and thus with greater sensitivity and increased throughput. A single high resolution capillary liquid chromatography separation combined with high sensitivity, high resolution and ac-curate FT-ICR measurements has been shown capable of characterizing peptide mixtures of significantly more than 10 5 components with mass accuracies of -1 ppm, sufficient for broad protein identification using AMTs. Other attractions of the approach include the broad and relatively unbiased proteome coverage, the capability for exploiting stable isotope labeling methods to realize high precision for relative protein abundance measurements, and the projected potential for study of mammalian proteomes when combined with additional sample fractionation. Using this strategy, in our first application we have been able to identify AMTs for 60% of the potentially expressed proteins in the organism Deinococcus radiodurans.

  2. ASYMPTOTICALLY OPTIMAL HIGH-ORDER ACCURATE ALGORITHMS FOR THE SOLUTION OF CERTAIN ELLIPTIC PDEs

    SciTech Connect

    Leonid Kunyansky, PhD

    2008-11-26

    The main goal of the project, "Asymptotically Optimal, High-Order Accurate Algorithms for the Solution of Certain Elliptic PDE's" (DE-FG02-03ER25577) was to develop fast, high-order algorithms for the solution of scattering problems and spectral problems of photonic crystals theory. The results we obtained lie in three areas: (1) asymptotically fast, high-order algorithms for the solution of eigenvalue problems of photonics, (2) fast, high-order algorithms for the solution of acoustic and electromagnetic scattering problems in the inhomogeneous media, and (3) inversion formulas and fast algorithms for the inverse source problem for the acoustic wave equation, with applications to thermo- and opto- acoustic tomography.

  3. Highly accurate analytical energy of a two-dimensional exciton in a constant magnetic field

    NASA Astrophysics Data System (ADS)

    Hoang, Ngoc-Tram D.; Nguyen, Duy-Anh P.; Hoang, Van-Hung; Le, Van-Hoang

    2016-08-01

    Explicit expressions are given for analytically describing the dependence of the energy of a two-dimensional exciton on magnetic field intensity. These expressions are highly accurate with the precision of up to three decimal places for the whole range of the magnetic field intensity. The results are shown for the ground state and some excited states; moreover, we have all formulae to obtain similar expressions of any excited state. Analysis of numerical results shows that the precision of three decimal places is maintained for the excited states with the principal quantum number of up to n=100.

  4. A new benchmark with high accurate solution for hot-cold fluids mixing

    NASA Astrophysics Data System (ADS)

    Younes, Anis; Fahs, Marwan; Zidane, Ali; Huggenberger, Peter; Zechner, Eric

    2015-09-01

    A new benchmark is proposed for the verification of buoyancy-driven flow codes. The benchmark deals with mixing hot and cold fluids from the opposite boundaries of an open channel. A high accurate solution is developed using the Fourier-Galerkin (FG) method and compared to the results of an advanced finite element (FE) model. An excellent agreement is observed between the FG and FE solutions for different Reynolds numbers which demonstrates the viability of the solutions in benchmarking buoyancy-driven flow numerical codes.

  5. Laryngeal High-Speed Videoendoscopy: Rationale and Recommendation for Accurate and Consistent Terminology

    PubMed Central

    Deliyski, Dimitar D.; Hillman, Robert E.

    2015-01-01

    Purpose The authors discuss the rationale behind the term laryngeal high-speed videoendoscopy to describe the application of high-speed endoscopic imaging techniques to the visualization of vocal fold vibration. Method Commentary on the advantages of using accurate and consistent terminology in the field of voice research is provided. Specific justification is described for each component of the term high-speed videoendoscopy, which is compared and contrasted with alternative terminologies in the literature. Results In addition to the ubiquitous high-speed descriptor, the term endoscopy is necessary to specify the appropriate imaging technology and distinguish among modalities such as ultrasound, magnetic resonance imaging, and nonendoscopic optical imaging. Furthermore, the term video critically indicates the electronic recording of a sequence of optical still images representing scenes in motion, in contrast to strobed images using high-speed photography and non-optical high-speed magnetic resonance imaging. High-speed videoendoscopy thus concisely describes the technology and can be appended by the desired anatomical nomenclature such as laryngeal. Conclusions Laryngeal high-speed videoendoscopy strikes a balance between conciseness and specificity when referring to the typical high-speed imaging method performed on human participants. Guidance for the creation of future terminology provides clarity and context for current and future experiments and the dissemination of results among researchers. PMID:26375398

  6. Highly accurate and fast optical penetration-based silkworm gender separation system

    NASA Astrophysics Data System (ADS)

    Kamtongdee, Chakkrit; Sumriddetchkajorn, Sarun; Chanhorm, Sataporn

    2015-07-01

    Based on our research work in the last five years, this paper highlights our innovative optical sensing system that can identify and separate silkworm gender highly suitable for sericulture industry. The key idea relies on our proposed optical penetration concepts and once combined with simple image processing operations leads to high accuracy in identifying of silkworm gender. Inside the system, there are electronic and mechanical parts that assist in controlling the overall system operation, processing the optical signal, and separating the female from male silkworm pupae. With current system performance, we achieve a very highly accurate more than 95% in identifying gender of silkworm pupae with an average system operational speed of 30 silkworm pupae/minute. Three of our systems are already in operation at Thailand's Queen Sirikit Sericulture Centers.

  7. Highly accurate video coordinate generation for automatic 3-D trajectory calculation

    NASA Astrophysics Data System (ADS)

    Macleod, A.; Morris, Julian R. W.; Lyster, M.

    1990-08-01

    Most TV-based motion analysis systems, including the original version of 1/ICON, produce 3D coordinates by combining pre-tracked 2D trajectories from each camera. The latest version of the system, VICON-VX, uses totally automatic 3D trajectory calculation using the Geometric Self Identification (GSI) technique. This is achieved by matching unsorted 2D image coordinates from all cameras, looking for intersecting marker 'rays', and matching intersections into 3D trajectories. Effective GSI, with low false-positive intersection rates is only possible with highly accurate 2D data, produced by stable, high-resolution coordinate generators, and incorporating appropriate compensation for lens distortions. Data capture software and hardware have been completely redesigned to achieve this accuracy, together with higher throughput rates and better resistance to errors. In addition, a new ADC facility has been incorporated to allow very high speed analog data acquisition, synchronised with video measurements.

  8. DPR-tree: a distributed parallel spatial index structure for high performance spatial databases

    NASA Astrophysics Data System (ADS)

    Zhou, Yan; Zhu, Qing; Liu, Qiang

    2008-12-01

    Parallelism of spatial index could significantly improve the performance of spatial queries, special for massive spatial databases, so the research of parallel spatial index takes a important role in high performance spatial databases. Existing parallel spatial index methods have two main shortcoming: one is accessing hotspot and bottleneck of index items located in main server, the other is high costs and complicated operations for maintaining index consistency. Aim at these, a distributed parallel spatial index structure called DPR-tree is proposed. It splits whole index region into partition sub-regions by using Hilbert space-filling curve grid and organizes index sub-regions according to locality of spatial objects, then maps index sub-regions to partition sub-regions and assigns these index sub-regions to different computer nodes by a appointed map function, Each computer node manages a multi-level distributed sub-Rtree which is built from a index sub-region. Our experimental results indicate that the proposed parallel spatial index can achieve speedup well and offer significant potential for reducing query response time.

  9. Spatial filters for high average power lasers

    DOEpatents

    Erlandson, Alvin C

    2012-11-27

    A spatial filter includes a first filter element and a second filter element overlapping with the first filter element. The first filter element includes a first pair of cylindrical lenses separated by a first distance. Each of the first pair of cylindrical lenses has a first focal length. The first filter element also includes a first slit filter positioned between the first pair of cylindrical lenses. The second filter element includes a second pair of cylindrical lenses separated by a second distance. Each of the second pair of cylindrical lenses has a second focal length. The second filter element also includes a second slit filter positioned between the second pair of cylindrical lenses.

  10. High spatial resolution restoration of IRAS images

    NASA Technical Reports Server (NTRS)

    Grasdalen, Gary L.; Inguva, R.; Dyck, H. Melvin; Canterna, R.; Hackwell, John A.

    1990-01-01

    A general technique to improve the spatial resolution of the IRAS AO data was developed at The Aerospace Corporation using the Maximum Entropy algorithm of Skilling and Gull. The technique has been applied to a variety of fields and several individual AO MACROS. With this general technique, resolutions of 15 arcsec were achieved in 12 and 25 micron images and 30 arcsec in 60 and 100 micron images. Results on galactic plane fields show that both photometric and positional accuracy achieved in the general IRAS survey are also achieved in the reconstructed images.

  11. A high-power spatial filter for Thomson scattering stray light reduction

    NASA Astrophysics Data System (ADS)

    Levesque, J. P.; Litzner, K. D.; Mauel, M. E.; Maurer, D. A.; Navratil, G. A.; Pedersen, T. S.

    2011-03-01

    The Thomson scattering diagnostic on the High Beta Tokamak-Extended Pulse (HBT-EP) is routinely used to measure electron temperature and density during plasma discharges. Avalanche photodiodes in a five-channel interference filter polychromator measure scattered light from a 6 ns, 800 mJ, 1064 nm Nd:YAG laser pulse. A low cost, high-power spatial filter was designed, tested, and added to the laser beamline in order to reduce stray laser light to levels which are acceptable for accurate Rayleigh calibration. A detailed analysis of the spatial filter design and performance is given. The spatial filter can be easily implemented in an existing Thomson scattering system without the need to disturb the vacuum chamber or significantly change the beamline. Although apertures in the spatial filter suffer substantial damage from the focused beam, with proper design they can last long enough to permit absolute calibration.

  12. Quantitative proteomics using the high resolution accurate mass capabilities of the quadrupole-orbitrap mass spectrometer.

    PubMed

    Gallien, Sebastien; Domon, Bruno

    2014-08-01

    High resolution/accurate mass hybrid mass spectrometers have considerably advanced shotgun proteomics and the recent introduction of fast sequencing capabilities has expanded its use for targeted approaches. More specifically, the quadrupole-orbitrap instrument has a unique configuration and its new features enable a wide range of experiments. An overview of the analytical capabilities of this instrument is presented, with a focus on its application to quantitative analyses. The high resolution, the trapping capability and the versatility of the instrument have allowed quantitative proteomic workflows to be redefined and new data acquisition schemes to be developed. The initial proteomic applications have shown an improvement of the analytical performance. However, as quantification relies on ion trapping, instead of ion beam, further refinement of the technique can be expected.

  13. Improved highly accurate localized motion imaging for monitoring high-intensity focused ultrasound therapy

    NASA Astrophysics Data System (ADS)

    Qu, Xiaolei; Azuma, Takashi; Sugiyama, Ryusuke; Kanazawa, Kengo; Seki, Mika; Sasaki, Akira; Takeuchi, Hideki; Fujiwara, Keisuke; Itani, Kazunori; Tamano, Satoshi; Takagi, Shu; Sakuma, Ichiro; Matsumoto, Yoichiro

    2016-07-01

    Visualizing an area subjected to high-intensity focused ultrasound (HIFU) therapy is necessary for controlling the amount of HIFU exposure. One of the promising monitoring methods is localized motion imaging (LMI), which estimates coagulation length by detecting the change in stiffness. In this study, we improved the accuracy of our previous LMI by dynamic cross-correlation window (DCCW) and maximum vibration amount (MVA) methods. The DCCW method was used to increase the accuracy of estimating vibration amplitude, and the MVA method was employed to increase signal-noise ratio of the decrease ratio at the coagulated area. The qualitative comparison of results indicated that the two proposed methods could suppress the effect of noise. Regarding the results of the quantitative comparison, coagulation length was estimated with higher accuracy by the improved LMI method, and the root-mean-square error (RMSE) was reduced from 2.51 to 1.69 mm.

  14. Improved highly accurate localized motion imaging for monitoring high-intensity focused ultrasound therapy

    NASA Astrophysics Data System (ADS)

    Qu, Xiaolei; Azuma, Takashi; Sugiyama, Ryusuke; Kanazawa, Kengo; Seki, Mika; Sasaki, Akira; Takeuchi, Hideki; Fujiwara, Keisuke; Itani, Kazunori; Tamano, Satoshi; Takagi, Shu; Sakuma, Ichiro; Matsumoto, Yoichiro

    2016-07-01

    Visualizing an area subjected to high-intensity focused ultrasound (HIFU) therapy is necessary for controlling the amount of HIFU exposure. One of the promising monitoring methods is localized motion imaging (LMI), which estimates coagulation length by detecting the change in stiffness. In this study, we improved the accuracy of our previous LMI by dynamic cross-correlation window (DCCW) and maximum vibration amount (MVA) methods. The DCCW method was used to increase the accuracy of estimating vibration amplitude, and the MVA method was employed to increase signal–noise ratio of the decrease ratio at the coagulated area. The qualitative comparison of results indicated that the two proposed methods could suppress the effect of noise. Regarding the results of the quantitative comparison, coagulation length was estimated with higher accuracy by the improved LMI method, and the root-mean-square error (RMSE) was reduced from 2.51 to 1.69 mm.

  15. Spatial filters for high power lasers

    DOEpatents

    Erlandson, Alvin Charles; Bayramian, Andrew James

    2014-12-02

    A spatial filter includes a first filter element and a second filter element overlapping with the first filter element. The first filter element includes a first pair of cylindrical lenses separated by a first distance. Each of the first pair of cylindrical lenses has a first focal length. The first filter element also includes a first longitudinal slit filter positioned between the first pair of cylindrical lenses. The second filter element includes a second pair of cylindrical lenses separated by a second distance. Each of the second pair of cylindrical lenses has a second focal length. The second filter element also includes a second longitudinal slit filter positioned between the second pair of cylindrical lenses.

  16. Use of Monocrystalline Silicon as Tool Material for Highly Accurate Blanking of Thin Metal Foils

    SciTech Connect

    Hildering, Sven; Engel, Ulf; Merklein, Marion

    2011-05-04

    The trend towards miniaturisation of metallic mass production components combined with increased component functionality is still unbroken. Manufacturing these components by forming and blanking offers economical and ecological advantages combined with the needed accuracy. The complexity of producing tools with geometries below 50 {mu}m by conventional manufacturing methods becomes disproportional higher. Expensive serial finishing operations are required to achieve an adequate surface roughness combined with accurate geometry details. A novel approach for producing such tools is the use of advanced etching technologies for monocrystalline silicon that are well-established in the microsystems technology. High-precision vertical geometries with a width down to 5 {mu}m are possible. The present study shows a novel concept using this potential for the blanking of thin copper foils with monocrystallline silicon as a tool material. A self-contained machine-tool with compact outer dimensions was designed to avoid tensile stresses in the brittle silicon punch by an accurate, careful alignment of the punch, die and metal foil. A microscopic analysis of the monocrystalline silicon punch shows appropriate properties regarding flank angle, edge geometry and surface quality for the blanking process. Using a monocrystalline silicon punch with a width of 70 {mu}m blanking experiments on as-rolled copper foils with a thickness of 20 {mu}m demonstrate the general applicability of this material for micro production processes.

  17. Intrinsic spatial shift of local focus metric curves in digital inline holography for accurate 3D morphology measurement of irregular micro-objects

    NASA Astrophysics Data System (ADS)

    Wu, Yingchun; Wu, Xuecheng; Lebrun, Denis; Brunel, Marc; Coëtmellec, Sébastien; Lesouhaitier, Olivier; Chen, Jia; Gréhan, Gérard

    2016-09-01

    A theoretical model of digital inline holography system reveals that the local focus metric curves (FMCs) of different parts of an irregular micro-object present spatial shift in the depth direction which is resulted from the depth shift. Thus, the 3D morphology of an irregular micro-object can be accurately measured using the cross correlation of the local FMCs. This method retrieves the 3D depth information directly, avoiding the uncertainty inherited from the depth position determination. Typical 3D morphology measurements, including the 3D boundary lines of tilted carbon fibers and irregular coal particles, and the 3D swimming gesture of a live Caenorhabdities elegans, are presented.

  18. Procedure for accurate fabrication of tissue compensators with high-density material

    NASA Astrophysics Data System (ADS)

    Mejaddem, Younes; Lax, Ingmar; Adakkai K, Shamsuddin

    1997-02-01

    An accurate method for producing compensating filters using high-density material (Cerrobend) is described. The procedure consists of two cutting steps in a Styrofoam block: (i) levelling a surface of the block to a reference level; (ii) depth-modulated milling of the levelled block in accordance with pre-calculated thickness profiles of the compensator. The calculated thickness (generated by a dose planning system) can be reproduced within acceptable accuracy. The desired compensator thickness manufactured according to this procedure is reproduced to within 0.1 mm, corresponding to a 0.5% change in dose at a beam quality of 6 MV. The results of our quality control checks performed with the technique of stylus profiling measurements show an accuracy of 0.04 mm in the milling process over an arbitrary profile along the milled-out Styrofoam block.

  19. Highly accurate thickness measurement of multi-layered automotive paints using terahertz technology

    NASA Astrophysics Data System (ADS)

    Krimi, Soufiene; Klier, Jens; Jonuscheit, Joachim; von Freymann, Georg; Urbansky, Ralph; Beigang, René

    2016-07-01

    In this contribution, we present a highly accurate approach for thickness measurements of multi-layered automotive paints using terahertz time domain spectroscopy in reflection geometry. The proposed method combines the benefits of a model-based material parameters extraction method to calibrate the paint coatings, a generalized Rouard's method to simulate the terahertz radiation behavior within arbitrary thin films, and the robustness of a powerful evolutionary optimization algorithm to increase the sensitivity of the minimum thickness measurement limit. Within the framework of this work, a self-calibration model is introduced, which takes into consideration the real industrial challenges such as the effect of wet-on-wet spray in the painting process.

  20. Geometrically invariant and high capacity image watermarking scheme using accurate radial transform

    NASA Astrophysics Data System (ADS)

    Singh, Chandan; Ranade, Sukhjeet K.

    2013-12-01

    Angular radial transform (ART) is a region based descriptor and possesses many attractive features such as rotation invariance, low computational complexity and resilience to noise which make them more suitable for invariant image watermarking than that of many transform domain based image watermarking techniques. In this paper, we introduce ART for fast and geometrically invariant image watermarking scheme with high embedding capacity. We also develop an accurate and fast framework for the computation of ART coefficients based on Gaussian quadrature numerical integration, 8-way symmetry/anti-symmetry properties and recursive relations for the calculation of sinusoidal kernel functions. ART coefficients so computed are then used for embedding the binary watermark using dither modulation. Experimental studies reveal that the proposed watermarking scheme not only provides better robustness against geometric transformations and other signal processing distortions, but also has superior advantages over the existing ones in terms of embedding capacity, speed and visual imperceptibility.

  1. Indirect Terahertz Spectroscopy of Molecular Ions Using Highly Accurate and Precise Mid-Ir Spectroscopy

    NASA Astrophysics Data System (ADS)

    Mills, Andrew A.; Ford, Kyle B.; Kreckel, Holger; Perera, Manori; Crabtree, Kyle N.; McCall, Benjamin J.

    2009-06-01

    With the advent of Herschel and SOFIA, laboratory methods capable of providing molecular rest frequencies in the terahertz and sub-millimeter regime are increasingly important. As of yet, it has been difficult to perform spectroscopy in this wavelength region due to the limited availability of radiation sources, optics, and detectors. Our goal is to provide accurate THz rest frequencies for molecular ions by combining previously recorded microwave transitions with combination differences obtained from high precision mid-IR spectroscopy. We are constructing a Sensitive Resolved Ion Beam Spectroscopy setup which will harness the benefits of kinematic compression in a molecular ion beam to enable very high resolution spectroscopy. This ion beam is interrogated by continuous-wave cavity ringdown spectroscopy using a home-made widely tunable difference frequency laser that utilizes two near-IR lasers and a periodically-poled lithium niobate crystal. Here, we report our efforts to optimize our ion beam spectrometer and to perform high-precision and high-accuracy frequency measurements using an optical frequency comb. footnote

  2. Highly accurate moving object detection in variable bit rate video-based traffic monitoring systems.

    PubMed

    Huang, Shih-Chia; Chen, Bo-Hao

    2013-12-01

    Automated motion detection, which segments moving objects from video streams, is the key technology of intelligent transportation systems for traffic management. Traffic surveillance systems use video communication over real-world networks with limited bandwidth, which frequently suffers because of either network congestion or unstable bandwidth. Evidence supporting these problems abounds in publications about wireless video communication. Thus, to effectively perform the arduous task of motion detection over a network with unstable bandwidth, a process by which bit-rate is allocated to match the available network bandwidth is necessitated. This process is accomplished by the rate control scheme. This paper presents a new motion detection approach that is based on the cerebellar-model-articulation-controller (CMAC) through artificial neural networks to completely and accurately detect moving objects in both high and low bit-rate video streams. The proposed approach is consisted of a probabilistic background generation (PBG) module and a moving object detection (MOD) module. To ensure that the properties of variable bit-rate video streams are accommodated, the proposed PBG module effectively produces a probabilistic background model through an unsupervised learning process over variable bit-rate video streams. Next, the MOD module, which is based on the CMAC network, completely and accurately detects moving objects in both low and high bit-rate video streams by implementing two procedures: 1) a block selection procedure and 2) an object detection procedure. The detection results show that our proposed approach is capable of performing with higher efficacy when compared with the results produced by other state-of-the-art approaches in variable bit-rate video streams over real-world limited bandwidth networks. Both qualitative and quantitative evaluations support this claim; for instance, the proposed approach achieves Similarity and F1 accuracy rates that are 76

  3. Highly accurate moving object detection in variable bit rate video-based traffic monitoring systems.

    PubMed

    Huang, Shih-Chia; Chen, Bo-Hao

    2013-12-01

    Automated motion detection, which segments moving objects from video streams, is the key technology of intelligent transportation systems for traffic management. Traffic surveillance systems use video communication over real-world networks with limited bandwidth, which frequently suffers because of either network congestion or unstable bandwidth. Evidence supporting these problems abounds in publications about wireless video communication. Thus, to effectively perform the arduous task of motion detection over a network with unstable bandwidth, a process by which bit-rate is allocated to match the available network bandwidth is necessitated. This process is accomplished by the rate control scheme. This paper presents a new motion detection approach that is based on the cerebellar-model-articulation-controller (CMAC) through artificial neural networks to completely and accurately detect moving objects in both high and low bit-rate video streams. The proposed approach is consisted of a probabilistic background generation (PBG) module and a moving object detection (MOD) module. To ensure that the properties of variable bit-rate video streams are accommodated, the proposed PBG module effectively produces a probabilistic background model through an unsupervised learning process over variable bit-rate video streams. Next, the MOD module, which is based on the CMAC network, completely and accurately detects moving objects in both low and high bit-rate video streams by implementing two procedures: 1) a block selection procedure and 2) an object detection procedure. The detection results show that our proposed approach is capable of performing with higher efficacy when compared with the results produced by other state-of-the-art approaches in variable bit-rate video streams over real-world limited bandwidth networks. Both qualitative and quantitative evaluations support this claim; for instance, the proposed approach achieves Similarity and F1 accuracy rates that are 76

  4. A hybrid stochastic-deterministic computational model accurately describes spatial dynamics and virus diffusion in HIV-1 growth competition assay.

    PubMed

    Immonen, Taina; Gibson, Richard; Leitner, Thomas; Miller, Melanie A; Arts, Eric J; Somersalo, Erkki; Calvetti, Daniela

    2012-11-01

    We present a new hybrid stochastic-deterministic, spatially distributed computational model to simulate growth competition assays on a relatively immobile monolayer of peripheral blood mononuclear cells (PBMCs), commonly used for determining ex vivo fitness of human immunodeficiency virus type-1 (HIV-1). The novel features of our approach include incorporation of viral diffusion through a deterministic diffusion model while simulating cellular dynamics via a stochastic Markov chain model. The model accounts for multiple infections of target cells, CD4-downregulation, and the delay between the infection of a cell and the production of new virus particles. The minimum threshold level of infection induced by a virus inoculum is determined via a series of dilution experiments, and is used to determine the probability of infection of a susceptible cell as a function of local virus density. We illustrate how this model can be used for estimating the distribution of cells infected by either a single virus type or two competing viruses. Our model captures experimentally observed variation in the fitness difference between two virus strains, and suggests a way to minimize variation and dual infection in experiments.

  5. A new high-order accurate continuous Galerkin method for linear elastodynamics problems

    NASA Astrophysics Data System (ADS)

    Idesman, Alexander V.

    2007-07-01

    A new high-order accurate time-continuous Galerkin (TCG) method for elastodynamics is suggested. The accuracy of the new implicit TCG method is increased by a factor of two in comparison to that of the standard TCG method and is one order higher than the accuracy of the standard time-discontinuous Galerkin (TDG) method at the same number of degrees of freedom. The new method is unconditionally stable and has controllable numerical dissipation at high frequencies. An iterative predictor/multi-corrector solver that includes the factorization of the effective mass matrix of the same dimension as that of the mass matrix for the second-order methods is developed for the new TCG method. A new strategy combining numerical methods with small and large numerical dissipation is developed for elastodynamics. Simple numerical tests show a significant reduction in the computation time (by 5 25 times) for the new TCG method in comparison to that for second-order methods, and the suppression of spurious high-frequency oscillations.

  6. Raman spectroscopy for highly accurate estimation of the age of refrigerated porcine muscle

    NASA Astrophysics Data System (ADS)

    Timinis, Constantinos; Pitris, Costas

    2016-03-01

    The high water content of meat, combined with all the nutrients it contains, make it vulnerable to spoilage at all stages of production and storage even when refrigerated at 5 °C. A non-destructive and in situ tool for meat sample testing, which could provide an accurate indication of the storage time of meat, would be very useful for the control of meat quality as well as for consumer safety. The proposed solution is based on Raman spectroscopy which is non-invasive and can be applied in situ. For the purposes of this project, 42 meat samples from 14 animals were obtained and three Raman spectra per sample were collected every two days for two weeks. The spectra were subsequently processed and the sample age was calculated using a set of linear differential equations. In addition, the samples were classified in categories corresponding to the age in 2-day steps (i.e., 0, 2, 4, 6, 8, 10, 12 or 14 days old), using linear discriminant analysis and cross-validation. Contrary to other studies, where the samples were simply grouped into two categories (higher or lower quality, suitable or unsuitable for human consumption, etc.), in this study, the age was predicted with a mean error of ~ 1 day (20%) or classified, in 2-day steps, with 100% accuracy. Although Raman spectroscopy has been used in the past for the analysis of meat samples, the proposed methodology has resulted in a prediction of the sample age far more accurately than any report in the literature.

  7. Towards more accurate numerical modeling of impedance based high frequency harmonic vibration

    NASA Astrophysics Data System (ADS)

    Lim, Yee Yan; Kiong Soh, Chee

    2014-03-01

    The application of smart materials in various fields of engineering has recently become increasingly popular. For instance, the high frequency based electromechanical impedance (EMI) technique employing smart piezoelectric materials is found to be versatile in structural health monitoring (SHM). Thus far, considerable efforts have been made to study and improve the technique. Various theoretical models of the EMI technique have been proposed in an attempt to better understand its behavior. So far, the three-dimensional (3D) coupled field finite element (FE) model has proved to be the most accurate. However, large discrepancies between the results of the FE model and experimental tests, especially in terms of the slope and magnitude of the admittance signatures, continue to exist and are yet to be resolved. This paper presents a series of parametric studies using the 3D coupled field finite element method (FEM) on all properties of materials involved in the lead zirconate titanate (PZT) structure interaction of the EMI technique, to investigate their effect on the admittance signatures acquired. FE model updating is then performed by adjusting the parameters to match the experimental results. One of the main reasons for the lower accuracy, especially in terms of magnitude and slope, of previous FE models is the difficulty in determining the damping related coefficients and the stiffness of the bonding layer. In this study, using the hysteretic damping model in place of Rayleigh damping, which is used by most researchers in this field, and updated bonding stiffness, an improved and more accurate FE model is achieved. The results of this paper are expected to be useful for future study of the subject area in terms of research and application, such as modeling, design and optimization.

  8. Accurate time delay technology in simulated test for high precision laser range finder

    NASA Astrophysics Data System (ADS)

    Chen, Zhibin; Xiao, Wenjian; Wang, Weiming; Xue, Mingxi

    2015-10-01

    With the continuous development of technology, the ranging accuracy of pulsed laser range finder (LRF) is higher and higher, so the maintenance demand of LRF is also rising. According to the dominant ideology of "time analog spatial distance" in simulated test for pulsed range finder, the key of distance simulation precision lies in the adjustable time delay. By analyzing and comparing the advantages and disadvantages of fiber and circuit delay, a method was proposed to improve the accuracy of the circuit delay without increasing the count frequency of the circuit. A high precision controllable delay circuit was designed by combining the internal delay circuit and external delay circuit which could compensate the delay error in real time. And then the circuit delay accuracy could be increased. The accuracy of the novel circuit delay methods proposed in this paper was actually measured by a high sampling rate oscilloscope actual measurement. The measurement result shows that the accuracy of the distance simulated by the circuit delay is increased from +/- 0.75m up to +/- 0.15m. The accuracy of the simulated distance is greatly improved in simulated test for high precision pulsed range finder.

  9. Gold nanospikes based microsensor as a highly accurate mercury emission monitoring system

    PubMed Central

    Sabri, Ylias M.; Ippolito, Samuel J.; Tardio, James; Bansal, Vipul; O'Mullane, Anthony P.; Bhargava, Suresh K.

    2014-01-01

    Anthropogenic elemental mercury (Hg0) emission is a serious worldwide environmental problem due to the extreme toxicity of the heavy metal to humans, plants and wildlife. Development of an accurate and cheap microsensor based online monitoring system which can be integrated as part of Hg0 removal and control processes in industry is still a major challenge. Here, we demonstrate that forming Au nanospike structures directly onto the electrodes of a quartz crystal microbalance (QCM) using a novel electrochemical route results in a self-regenerating, highly robust, stable, sensitive and selective Hg0 vapor sensor. The data from a 127 day continuous test performed in the presence of volatile organic compounds and high humidity levels, showed that the sensor with an electrodeposted sensitive layer had 260% higher response magnitude, 3.4 times lower detection limit (~22 μg/m3 or ~2.46 ppbv) and higher accuracy (98% Vs 35%) over a Au control based QCM (unmodified) when exposed to a Hg0 vapor concentration of 10.55 mg/m3 at 101°C. Statistical analysis of the long term data showed that the nano-engineered Hg0 sorption sites on the developed Au nanospikes sensitive layer play a critical role in the enhanced sensitivity and selectivity of the developed sensor towards Hg0 vapor. PMID:25338965

  10. High-power CMOS current driver with accurate transconductance for electrical impedance tomography.

    PubMed

    Constantinou, Loucas; Triantis, Iasonas F; Bayford, Richard; Demosthenous, Andreas

    2014-08-01

    Current drivers are fundamental circuits in bioimpedance measurements including electrical impedance tomography (EIT). In the case of EIT, the current driver is required to have a large output impedance to guarantee high current accuracy over a wide range of load impedance values. This paper presents an integrated current driver which meets these requirements and is capable of delivering large sinusoidal currents to the load. The current driver employs a differential architecture and negative feedback, the latter allowing the output current to be accurately set by the ratio of the input voltage to a resistor value. The circuit was fabricated in a 0.6- μm high-voltage CMOS process technology and its core occupies a silicon area of 0.64 mm (2) . It operates from a ± 9 V power supply and can deliver output currents up to 5 mA p-p. The accuracy of the maximum output current is within 0.41% up to 500 kHz, reducing to 0.47% at 1 MHz with a total harmonic distortion of 0.69%. The output impedance is 665 k Ω at 100 kHz and 372 k Ω at 500 kHz.

  11. High-order accurate physical-constraints-preserving finite difference WENO schemes for special relativistic hydrodynamics

    NASA Astrophysics Data System (ADS)

    Wu, Kailiang; Tang, Huazhong

    2015-10-01

    The paper develops high-order accurate physical-constraints-preserving finite difference WENO schemes for special relativistic hydrodynamical (RHD) equations, built on the local Lax-Friedrichs splitting, the WENO reconstruction, the physical-constraints-preserving flux limiter, and the high-order strong stability preserving time discretization. They are extensions of the positivity-preserving finite difference WENO schemes for the non-relativistic Euler equations [20]. However, developing physical-constraints-preserving methods for the RHD system becomes much more difficult than the non-relativistic case because of the strongly coupling between the RHD equations, no explicit formulas of the primitive variables and the flux vectors with respect to the conservative vector, and one more physical constraint for the fluid velocity in addition to the positivity of the rest-mass density and the pressure. The key is to prove the convexity and other properties of the admissible state set and discover a concave function with respect to the conservative vector instead of the pressure which is an important ingredient to enforce the positivity-preserving property for the non-relativistic case. Several one- and two-dimensional numerical examples are used to demonstrate accuracy, robustness, and effectiveness of the proposed physical-constraints-preserving schemes in solving RHD problems with large Lorentz factor, or strong discontinuities, or low rest-mass density or pressure etc.

  12. Robust and Accurate Shock Capturing Method for High-Order Discontinuous Galerkin Methods

    NASA Technical Reports Server (NTRS)

    Atkins, Harold L.; Pampell, Alyssa

    2011-01-01

    A simple yet robust and accurate approach for capturing shock waves using a high-order discontinuous Galerkin (DG) method is presented. The method uses the physical viscous terms of the Navier-Stokes equations as suggested by others; however, the proposed formulation of the numerical viscosity is continuous and compact by construction, and does not require the solution of an auxiliary diffusion equation. This work also presents two analyses that guided the formulation of the numerical viscosity and certain aspects of the DG implementation. A local eigenvalue analysis of the DG discretization applied to a shock containing element is used to evaluate the robustness of several Riemann flux functions, and to evaluate algorithm choices that exist within the underlying DG discretization. A second analysis examines exact solutions to the DG discretization in a shock containing element, and identifies a "model" instability that will inevitably arise when solving the Euler equations using the DG method. This analysis identifies the minimum viscosity required for stability. The shock capturing method is demonstrated for high-speed flow over an inviscid cylinder and for an unsteady disturbance in a hypersonic boundary layer. Numerical tests are presented that evaluate several aspects of the shock detection terms. The sensitivity of the results to model parameters is examined with grid and order refinement studies.

  13. Assessing temporal flux of plant hormones in stored processing potatoes using high definition accurate mass spectrometry

    PubMed Central

    Ordaz-Ortiz, José Juan; Foukaraki, Sofia; Terry, Leon Alexander

    2015-01-01

    Plant hormones are important molecules which at low concentration can regulate various physiological processes. Mass spectrometry has become a powerful technique for the quantification of multiple classes of plant hormones because of its high sensitivity and selectivity. We developed a new ultrahigh pressure liquid chromatography–full-scan high-definition accurate mass spectrometry method, for simultaneous determination of abscisic acid and four metabolites phaseic acid, dihydrophaseic acid, 7′-hydroxy-abscisic acid and abscisic acid glucose ester, cytokinins zeatin, zeatin riboside, gibberellins (GA1, GA3, GA4 and GA7) and indole-3-acetyl-L-aspartic acid. We measured the amount of plant hormones in the flesh and skin of two processing potato cvs. Sylvana and Russet Burbank stored for up to 30 weeks at 6 °C under ambient air conditions. Herein, we report for the first time that abscisic acid glucose ester seems to accumulate in the skin of potato tubers throughout storage time. The method achieved a lowest limit of detection of 0.22 ng g−1 of dry weight and a limit of quantification of 0.74 ng g−1 dry weight (zeatin riboside), and was able to recover, detect and quantify a total of 12 plant hormones spiked on flesh and skin of potato tubers. In addition, the mass accuracy for all compounds (<5 ppm) was evaluated. PMID:26504563

  14. High accurate interpolation of NURBS tool path for CNC machine tools

    NASA Astrophysics Data System (ADS)

    Liu, Qiang; Liu, Huan; Yuan, Songmei

    2016-06-01

    Feedrate fluctuation caused by approximation errors of interpolation methods has great effects on machining quality in NURBS interpolation, but few methods can efficiently eliminate or reduce it to a satisfying level without sacrificing the computing efficiency at present. In order to solve this problem, a high accurate interpolation method for NURBS tool path is proposed. The proposed method can efficiently reduce the feedrate fluctuation by forming a quartic equation with respect to the curve parameter increment, which can be efficiently solved by analytic methods in real-time. Theoretically, the proposed method can totally eliminate the feedrate fluctuation for any 2nd degree NURBS curves and can interpolate 3rd degree NURBS curves with minimal feedrate fluctuation. Moreover, a smooth feedrate planning algorithm is also proposed to generate smooth tool motion with considering multiple constraints and scheduling errors by an efficient planning strategy. Experiments are conducted to verify the feasibility and applicability of the proposed method. This research presents a novel NURBS interpolation method with not only high accuracy but also satisfying computing efficiency.

  15. High and low spatial frequencies in website evaluations.

    PubMed

    Thielsch, Meinald T; Hirschfeld, Gerrit

    2010-08-01

    Which features of websites are important for users' perceptions regarding aesthetics or usability? This study investigates how evaluations of aesthetic appeal and usability depend on high vs. low spatial frequencies. High spatial frequencies convey information on fine details, whereas low spatial frequencies convey information about the global layout. Participants rated aesthetic appeal and usability of 50 website screenshots from different domains. Screenshots were presented unfiltered, low-pass filtered with blurred targets or high-pass filtered with high-pass filtered targets. The main result is that low spatial frequencies can be seen to have a unique contribution in perceived website aesthetics, thus confirming a central prediction from processing fluency theory. There was no connection between low spatial frequencies and usability evaluations, whereas strong correlations were found between ratings of high-pass filtered websites and those of unfiltered websites in aesthetics and usability. This study thus offers a new perspective on the biological basis of users' website perceptions. This research links ergonomics to neurocognitive models of visual processing. This paper investigates how high and low spatial frequencies, which are neurologically processed in different visual pathways, independently contribute to users' perceptions of websites. This is very relevant for theories of website perceptions and for practitioners of web design. PMID:20658391

  16. High resolution DEM from Tandem-X interferometry: an accurate tool to characterize volcanic activity

    NASA Astrophysics Data System (ADS)

    Albino, Fabien; Kervyn, Francois

    2013-04-01

    Tandem-X mission was launched by the German agency (DLR) in June 2010. It is a new generation high resolution SAR sensor mainly dedicated to topographic applications. For the purpose of our researches focused on the study of the volcano-tectonic activity in the Kivu Rift area, a set of Tandem-X bistatic radar images were used to produce a high resolution InSAR DEM of the Virunga Volcanic Province (VVP). The VVP is part of the Western branch of the African rift, situated at the boundary between D.R. Congo, Rwanda and Uganda. It has two highly active volcanoes, Nyiragongo and Nyamulagira. A first task concerns the quantitative assessment of the vertical accuracy that can be achieved with these new data. The new DEMs are compared to other space borne datasets (SRTM, ASTER) but also to field measurements given by differential GPS. Multi-temporal radar acquisitions allow us to produce several DEM of the same area. This appeared to be very useful in the context of an active volcanic context where new geomorphological features (faults, fissures, volcanic cones and lava flows) appear continuously through time. For example, since the year 2000, time of the SRTM acquisition, we had one eruption at Nyiragongo (2002) and six eruptions at Nyamulagira (2001, 2002, 2004, 2006, 2010 and 2011) which all induce large changes in the landscape with the emplacement of new lava fields and scoria cones. From our repetitive Tandem-X DEM production, we have a tool to identify and also quantify in term of size and volume all the topographic changes relative to this past volcanic activity. These parameters are high value information to improve the understanding of the Virunga volcanoes; the accurate estimation of erupted volume and knowledge of structural features associated to past eruptions are key parameters to understand the volcanic system, to ameliorate the hazard assessment, and finally contribute to risk mitigation in a densely populated area.

  17. Solar system events at high spatial resolution

    SciTech Connect

    Baines, K H; Gavel, D T; Getz, A M; Gibbartd, S G; MacIntosh, B; Max, C E; McKay, C P; Young, E F; de Pater, I

    1999-02-19

    Until relatively recent advances in technology, astronomical observations from the ground were limited in image resolution by the blurring effects of earth's atmosphere. The blur extent, ranging typically from 0.5 to 2 seconds of arc at the best astronomical sights, precluded ground-based observations of the details of the solar system's moons, asteroids, and outermost planets. With the maturing of a high resolution image processing technique called speckle imaging the resolution limitation of the atmosphere can now be largely overcome. Over the past three years they have used speckle imaging to observe Titan, a moon of Saturn with an atmospheric density comparable to Earth's, Io, the volcanically active innermost moon of Jupiter, and Neptune, a gas giant outer planet which has continually changing planet-encircling storms. These observations were made at the world's largest telescope, the Keck telescope in Hawaii and represent the highest resolution infrared images of these objects ever taken.

  18. Continuous Digital Light Processing (cDLP): Highly Accurate Additive Manufacturing of Tissue Engineered Bone Scaffolds.

    PubMed

    Dean, David; Jonathan, Wallace; Siblani, Ali; Wang, Martha O; Kim, Kyobum; Mikos, Antonios G; Fisher, John P

    2012-03-01

    Highly accurate rendering of the external and internal geometry of bone tissue engineering scaffolds effects fit at the defect site, loading of internal pore spaces with cells, bioreactor-delivered nutrient and growth factor circulation, and scaffold resorption. It may be necessary to render resorbable polymer scaffolds with 50 μm or less accuracy to achieve these goals. This level of accuracy is available using Continuous Digital Light processing (cDLP) which utilizes a DLP(®) (Texas Instruments, Dallas, TX) chip. One such additive manufacturing device is the envisionTEC (Ferndale, MI) Perfactory(®). To use cDLP we integrate a photo-crosslinkable polymer, a photo-initiator, and a biocompatible dye. The dye attenuates light, thereby limiting the depth of polymerization. In this study we fabricated scaffolds using the well-studied resorbable polymer, poly(propylene fumarate) (PPF), titanium dioxide (TiO(2)) as a dye, Irgacure(®) 819 (BASF [Ciba], Florham Park, NJ) as an initiator, and diethyl fumarate as a solvent to control viscosity. PMID:23066427

  19. Continuous Digital Light Processing (cDLP): Highly Accurate Additive Manufacturing of Tissue Engineered Bone Scaffolds

    PubMed Central

    Dean, David; Wallace, Jonathan; Siblani, Ali; Wang, Martha O.; Kim, Kyobum; Mikos, Antonios G.; Fisher, John P.

    2012-01-01

    Highly accurate rendering of the external and internal geometry of bone tissue engineering scaffolds effects fit at the defect site, loading of internal pore spaces with cells, bioreactor-delivered nutrient and growth factor circulation, and scaffold resorption. It may be necessary to render resorbable polymer scaffolds with 50 μm or less accuracy to achieve these goals. This level of accuracy is available using Continuous Digital Light processing (cDLP) which utilizes a DLP® (Texas Instruments, Dallas, TX) chip. One such additive manufacturing device is the envisionTEC (Ferndale, MI) Perfactory®. To use cDLP we integrate a photo-crosslinkable polymer, a photo-initiator, and a biocompatible dye. The dye attenuates light, thereby limiting the depth of polymerization. In this study we fabricated scaffolds using the well-studied resorbable polymer, poly(propylene fumarate) (PPF), titanium dioxide (TiO2) as a dye, Irgacure® 819 (BASF [Ciba], Florham Park, NJ) as an initiator, and diethyl fumarate as a solvent to control viscosity. PMID:23066427

  20. A Highly Accurate Inclusive Cancer Screening Test Using Caenorhabditis elegans Scent Detection

    PubMed Central

    Uozumi, Takayuki; Shinden, Yoshiaki; Mimori, Koshi; Maehara, Yoshihiko; Ueda, Naoko; Hamakawa, Masayuki

    2015-01-01

    Early detection and treatment are of vital importance to the successful eradication of various cancers, and development of economical and non-invasive novel cancer screening systems is critical. Previous reports using canine scent detection demonstrated the existence of cancer-specific odours. However, it is difficult to introduce canine scent recognition into clinical practice because of the need to maintain accuracy. In this study, we developed a Nematode Scent Detection Test (NSDT) using Caenorhabditis elegans to provide a novel highly accurate cancer detection system that is economical, painless, rapid and convenient. We demonstrated wild-type C. elegans displayed attractive chemotaxis towards human cancer cell secretions, cancer tissues and urine from cancer patients but avoided control urine; in parallel, the response of the olfactory neurons of C. elegans to the urine from cancer patients was significantly stronger than to control urine. In contrast, G protein α mutants and olfactory neurons-ablated animals were not attracted to cancer patient urine, suggesting that C. elegans senses odours in urine. We tested 242 samples to measure the performance of the NSDT, and found the sensitivity was 95.8%; this is markedly higher than that of other existing tumour markers. Furthermore, the specificity was 95.0%. Importantly, this test was able to diagnose various cancer types tested at the early stage (stage 0 or 1). To conclude, C. elegans scent-based analyses might provide a new strategy to detect and study disease-associated scents. PMID:25760772

  1. Highly Accurate Prediction of Protein-Protein Interactions via Incorporating Evolutionary Information and Physicochemical Characteristics

    PubMed Central

    Li, Zheng-Wei; You, Zhu-Hong; Chen, Xing; Gui, Jie; Nie, Ru

    2016-01-01

    Protein-protein interactions (PPIs) occur at almost all levels of cell functions and play crucial roles in various cellular processes. Thus, identification of PPIs is critical for deciphering the molecular mechanisms and further providing insight into biological processes. Although a variety of high-throughput experimental techniques have been developed to identify PPIs, existing PPI pairs by experimental approaches only cover a small fraction of the whole PPI networks, and further, those approaches hold inherent disadvantages, such as being time-consuming, expensive, and having high false positive rate. Therefore, it is urgent and imperative to develop automatic in silico approaches to predict PPIs efficiently and accurately. In this article, we propose a novel mixture of physicochemical and evolutionary-based feature extraction method for predicting PPIs using our newly developed discriminative vector machine (DVM) classifier. The improvements of the proposed method mainly consist in introducing an effective feature extraction method that can capture discriminative features from the evolutionary-based information and physicochemical characteristics, and then a powerful and robust DVM classifier is employed. To the best of our knowledge, it is the first time that DVM model is applied to the field of bioinformatics. When applying the proposed method to the Yeast and Helicobacter pylori (H. pylori) datasets, we obtain excellent prediction accuracies of 94.35% and 90.61%, respectively. The computational results indicate that our method is effective and robust for predicting PPIs, and can be taken as a useful supplementary tool to the traditional experimental methods for future proteomics research. PMID:27571061

  2. Highly Accurate Prediction of Protein-Protein Interactions via Incorporating Evolutionary Information and Physicochemical Characteristics.

    PubMed

    Li, Zheng-Wei; You, Zhu-Hong; Chen, Xing; Gui, Jie; Nie, Ru

    2016-01-01

    Protein-protein interactions (PPIs) occur at almost all levels of cell functions and play crucial roles in various cellular processes. Thus, identification of PPIs is critical for deciphering the molecular mechanisms and further providing insight into biological processes. Although a variety of high-throughput experimental techniques have been developed to identify PPIs, existing PPI pairs by experimental approaches only cover a small fraction of the whole PPI networks, and further, those approaches hold inherent disadvantages, such as being time-consuming, expensive, and having high false positive rate. Therefore, it is urgent and imperative to develop automatic in silico approaches to predict PPIs efficiently and accurately. In this article, we propose a novel mixture of physicochemical and evolutionary-based feature extraction method for predicting PPIs using our newly developed discriminative vector machine (DVM) classifier. The improvements of the proposed method mainly consist in introducing an effective feature extraction method that can capture discriminative features from the evolutionary-based information and physicochemical characteristics, and then a powerful and robust DVM classifier is employed. To the best of our knowledge, it is the first time that DVM model is applied to the field of bioinformatics. When applying the proposed method to the Yeast and Helicobacter pylori (H. pylori) datasets, we obtain excellent prediction accuracies of 94.35% and 90.61%, respectively. The computational results indicate that our method is effective and robust for predicting PPIs, and can be taken as a useful supplementary tool to the traditional experimental methods for future proteomics research. PMID:27571061

  3. Highly Accurate Prediction of Protein-Protein Interactions via Incorporating Evolutionary Information and Physicochemical Characteristics.

    PubMed

    Li, Zheng-Wei; You, Zhu-Hong; Chen, Xing; Gui, Jie; Nie, Ru

    2016-01-01

    Protein-protein interactions (PPIs) occur at almost all levels of cell functions and play crucial roles in various cellular processes. Thus, identification of PPIs is critical for deciphering the molecular mechanisms and further providing insight into biological processes. Although a variety of high-throughput experimental techniques have been developed to identify PPIs, existing PPI pairs by experimental approaches only cover a small fraction of the whole PPI networks, and further, those approaches hold inherent disadvantages, such as being time-consuming, expensive, and having high false positive rate. Therefore, it is urgent and imperative to develop automatic in silico approaches to predict PPIs efficiently and accurately. In this article, we propose a novel mixture of physicochemical and evolutionary-based feature extraction method for predicting PPIs using our newly developed discriminative vector machine (DVM) classifier. The improvements of the proposed method mainly consist in introducing an effective feature extraction method that can capture discriminative features from the evolutionary-based information and physicochemical characteristics, and then a powerful and robust DVM classifier is employed. To the best of our knowledge, it is the first time that DVM model is applied to the field of bioinformatics. When applying the proposed method to the Yeast and Helicobacter pylori (H. pylori) datasets, we obtain excellent prediction accuracies of 94.35% and 90.61%, respectively. The computational results indicate that our method is effective and robust for predicting PPIs, and can be taken as a useful supplementary tool to the traditional experimental methods for future proteomics research.

  4. COMPLEX ORGANIC MOLECULES AT HIGH SPATIAL RESOLUTION TOWARD ORION-KL. I. SPATIAL SCALES

    SciTech Connect

    Widicus Weaver, Susanna L.; Friedel, Douglas N. E-mail: friedel@astro.illinois.edu

    2012-08-01

    Here we present high spatial resolution (<1'') observations of molecular emission in Orion-KL conducted using the Combined Array for Research in Millimeter-wave Astronomy. This work was motivated by recent millimeter continuum imaging studies of this region conducted at a similarly high spatial resolution, which revealed that the bulk of the emission arises from numerous compact sources, rather than the larger-scale extended structures typically associated with the Orion Hot Core and Compact Ridge. Given that the spatial extent of molecular emission greatly affects the determination of molecular abundances, it is important to determine the true spatial scale for complex molecules in this region. Additionally, it has recently been suggested that the relative spatial distributions of complex molecules in a source might give insight into the chemical mechanisms that drive complex chemistry in star-forming regions. In order to begin to address these issues, this study seeks to determine the spatial distributions of ethyl cyanide [C{sub 2}H{sub 5}CN], dimethyl ether [(CH{sub 3}){sub 2}O], methyl formate [HCOOCH{sub 3}], formic acid [HCOOH], acetone [(CH{sub 3}){sub 2}CO], SiO, methanol [CH{sub 3}OH], and methyl cyanide [CH{sub 3}CN] in Orion-KL at {lambda} = 3 mm. We find that for all observed molecules, the molecular emission arises from multiple components of the cloud that include a range of spatial scales and physical conditions. Here, we present the results of these observations and discuss the implications for studies of complex molecules in star-forming regions.

  5. A method of spatial mapping and reclassification for high-spatial-resolution remote sensing image classification.

    PubMed

    Wang, Guizhou; Liu, Jianbo; He, Guojin

    2013-01-01

    This paper presents a new classification method for high-spatial-resolution remote sensing images based on a strategic mechanism of spatial mapping and reclassification. The proposed method includes four steps. First, the multispectral image is classified by a traditional pixel-based classification method (support vector machine). Second, the panchromatic image is subdivided by watershed segmentation. Third, the pixel-based multispectral image classification result is mapped to the panchromatic segmentation result based on a spatial mapping mechanism and the area dominant principle. During the mapping process, an area proportion threshold is set, and the regional property is defined as unclassified if the maximum area proportion does not surpass the threshold. Finally, unclassified regions are reclassified based on spectral information using the minimum distance to mean algorithm. Experimental results show that the classification method for high-spatial-resolution remote sensing images based on the spatial mapping mechanism and reclassification strategy can make use of both panchromatic and multispectral information, integrate the pixel- and object-based classification methods, and improve classification accuracy.

  6. Predicting accurate fluorescent spectra for high molecular weight polycyclic aromatic hydrocarbons using density functional theory

    NASA Astrophysics Data System (ADS)

    Powell, Jacob; Heider, Emily C.; Campiglia, Andres; Harper, James K.

    2016-10-01

    The ability of density functional theory (DFT) methods to predict accurate fluorescence spectra for polycyclic aromatic hydrocarbons (PAHs) is explored. Two methods, PBE0 and CAM-B3LYP, are evaluated both in the gas phase and in solution. Spectra for several of the most toxic PAHs are predicted and compared to experiment, including three isomers of C24H14 and a PAH containing heteroatoms. Unusually high-resolution experimental spectra are obtained for comparison by analyzing each PAH at 4.2 K in an n-alkane matrix. All theoretical spectra visually conform to the profiles of the experimental data but are systematically offset by a small amount. Specifically, when solvent is included the PBE0 functional overestimates peaks by 16.1 ± 6.6 nm while CAM-B3LYP underestimates the same transitions by 14.5 ± 7.6 nm. These calculated spectra can be empirically corrected to decrease the uncertainties to 6.5 ± 5.1 and 5.7 ± 5.1 nm for the PBE0 and CAM-B3LYP methods, respectively. A comparison of computed spectra in the gas phase indicates that the inclusion of n-octane shifts peaks by +11 nm on average and this change is roughly equivalent for PBE0 and CAM-B3LYP. An automated approach for comparing spectra is also described that minimizes residuals between a given theoretical spectrum and all available experimental spectra. This approach identifies the correct spectrum in all cases and excludes approximately 80% of the incorrect spectra, demonstrating that an automated search of theoretical libraries of spectra may eventually become feasible.

  7. In-Depth Glycoproteomic Characterization of γ-Conglutin by High-Resolution Accurate Mass Spectrometry

    PubMed Central

    Schiarea, Silvia; Arnoldi, Lolita; Fanelli, Roberto; De Combarieu, Eric; Chiabrando, Chiara

    2013-01-01

    The molecular characterization of bioactive food components is necessary for understanding the mechanisms of their beneficial or detrimental effects on human health. This study focused on γ-conglutin, a well-known lupin seed N-glycoprotein with health-promoting properties and controversial allergenic potential. Given the importance of N-glycosylation for the functional and structural characteristics of proteins, we studied the purified protein by a mass spectrometry-based glycoproteomic approach able to identify the structure, micro-heterogeneity and attachment site of the bound N-glycan(s), and to provide extensive coverage of the protein sequence. The peptide/N-glycopeptide mixtures generated by enzymatic digestion (with or without N-deglycosylation) were analyzed by high-resolution accurate mass liquid chromatography–multi-stage mass spectrometry. The four main micro-heterogeneous variants of the single N-glycan bound to γ-conglutin were identified as Man2(Xyl) (Fuc) GlcNAc2, Man3(Xyl) (Fuc) GlcNAc2, GlcNAcMan3(Xyl) (Fuc) GlcNAc2 and GlcNAc 2Man3(Xyl) (Fuc) GlcNAc2. These carry both core β1,2-xylose and core α1-3-fucose (well known Cross-Reactive Carbohydrate Determinants), but corresponding fucose-free variants were also identified as minor components. The N-glycan was proven to reside on Asn131, one of the two potential N-glycosylation sites. The extensive coverage of the γ-conglutin amino acid sequence suggested three alternative N-termini of the small subunit, that were later confirmed by direct-infusion Orbitrap mass spectrometry analysis of the intact subunit. PMID:24069245

  8. Random generalized linear model: a highly accurate and interpretable ensemble predictor

    PubMed Central

    2013-01-01

    Background Ensemble predictors such as the random forest are known to have superior accuracy but their black-box predictions are difficult to interpret. In contrast, a generalized linear model (GLM) is very interpretable especially when forward feature selection is used to construct the model. However, forward feature selection tends to overfit the data and leads to low predictive accuracy. Therefore, it remains an important research goal to combine the advantages of ensemble predictors (high accuracy) with the advantages of forward regression modeling (interpretability). To address this goal several articles have explored GLM based ensemble predictors. Since limited evaluations suggested that these ensemble predictors were less accurate than alternative predictors, they have found little attention in the literature. Results Comprehensive evaluations involving hundreds of genomic data sets, the UCI machine learning benchmark data, and simulations are used to give GLM based ensemble predictors a new and careful look. A novel bootstrap aggregated (bagged) GLM predictor that incorporates several elements of randomness and instability (random subspace method, optional interaction terms, forward variable selection) often outperforms a host of alternative prediction methods including random forests and penalized regression models (ridge regression, elastic net, lasso). This random generalized linear model (RGLM) predictor provides variable importance measures that can be used to define a “thinned” ensemble predictor (involving few features) that retains excellent predictive accuracy. Conclusion RGLM is a state of the art predictor that shares the advantages of a random forest (excellent predictive accuracy, feature importance measures, out-of-bag estimates of accuracy) with those of a forward selected generalized linear model (interpretability). These methods are implemented in the freely available R software package randomGLM. PMID:23323760

  9. Accurate Visual Heading Estimation at High Rotation Rate Without Oculomotor or Static-Depth Cues

    NASA Technical Reports Server (NTRS)

    Stone, Leland S.; Perrone, John A.; Null, Cynthia H. (Technical Monitor)

    1995-01-01

    It has been claimed that either oculomotor or static depth cues provide the signals about self-rotation necessary approx.-1 deg/s. We tested this hypothesis by simulating self-motion along a curved path with the eyes fixed in the head (plus or minus 16 deg/s of rotation). Curvilinear motion offers two advantages: 1) heading remains constant in retinotopic coordinates, and 2) there is no visual-oculomotor conflict (both actual and simulated eye position remain stationary). We simulated 400 ms of rotation combined with 16 m/s of translation at fixed angles with respect to gaze towards two vertical planes of random dots initially 12 and 24 m away, with a field of view of 45 degrees. Four subjects were asked to fixate a central cross and to respond whether they were translating to the left or right of straight-ahead gaze. From the psychometric curves, heading bias (mean) and precision (semi-interquartile) were derived. The mean bias over 2-5 runs was 3.0, 4.0, -2.0, -0.4 deg for the first author and three naive subjects, respectively (positive indicating towards the rotation direction). The mean precision was 2.0, 1.9, 3.1, 1.6 deg. respectively. The ability of observers to make relatively accurate and precise heading judgments, despite the large rotational flow component, refutes the view that extra-flow-field information is necessary for human visual heading estimation at high rotation rates. Our results support models that process combined translational/rotational flow to estimate heading, but should not be construed to suggest that other cues do not play an important role when they are available to the observer.

  10. Spatial Classification of Orchards and Vineyards with High Spatial Resolution Panchromatic Imagery

    SciTech Connect

    Warner, Timothy; Steinmaus, Karen L.

    2005-02-01

    New high resolution single spectral band imagery offers the capability to conduct image classifications based on spatial patterns in imagery. A classification algorithm based on autocorrelation patterns was developed to automatically extract orchards and vineyards from satellite imagery. The algorithm was tested on IKONOS imagery over Granger, WA, which resulted in a classification accuracy of 95%.

  11. High spatial resolution measurements of ram accelerator gas dynamic phenomena

    NASA Technical Reports Server (NTRS)

    Hinkey, J. B.; Burnham, E. A.; Bruckner, A. P.

    1992-01-01

    High spatial resolution experimental tube wall pressure measurements of ram accelerator gas dynamic phenomena are presented. The projectile resembles the centerbody of a ramjet and travels supersonically through a tube filled with a combustible gaseous mixture, with the tube acting as the outer cowling. Pressure data are recorded as the projectile passes by sensors mounted in the tube wall at various locations along the tube. Data obtained by using a special highly instrumented section of tube has allowed the recording of gas dynamic phenomena with a spatial resolution on the order of one tenth the projectile length. High spatial resolution tube wall pressure data from the three regimes of propulsion studied to date (subdetonative, transdetonative, and superdetonative) are presented and reveal the 3D character of the flowfield induced by projectile fins and the canting of the projectile body relative to the tube wall. Also presented for comparison to the experimental data are calculations made with an inviscid, 3D CFD code.

  12. X-ray and microwave emissions from the July 19, 2012 solar flare: Highly accurate observations and kinetic models

    NASA Astrophysics Data System (ADS)

    Gritsyk, P. A.; Somov, B. V.

    2016-08-01

    The M7.7 solar flare of July 19, 2012, at 05:58 UT was observed with high spatial, temporal, and spectral resolutions in the hard X-ray and optical ranges. The flare occurred at the solar limb, which allowed us to see the relative positions of the coronal and chromospheric X-ray sources and to determine their spectra. To explain the observations of the coronal source and the chromospheric one unocculted by the solar limb, we apply an accurate analytical model for the kinetic behavior of accelerated electrons in a flare. We interpret the chromospheric hard X-ray source in the thick-target approximation with a reverse current and the coronal one in the thin-target approximation. Our estimates of the slopes of the hard X-ray spectra for both sources are consistent with the observations. However, the calculated intensity of the coronal source is lower than the observed one by several times. Allowance for the acceleration of fast electrons in a collapsing magnetic trap has enabled us to remove this contradiction. As a result of our modeling, we have estimated the flux density of the energy transferred by electrons with energies above 15 keV to be ˜5 × 1010 erg cm-2 s-1, which exceeds the values typical of the thick-target model without a reverse current by a factor of ˜5. To independently test the model, we have calculated the microwave spectrum in the range 1-50 GHz that corresponds to the available radio observations.

  13. Detailed and Highly Accurate 3d Models of High Mountain Areas by the Macs-Himalaya Aerial Camera Platform

    NASA Astrophysics Data System (ADS)

    Brauchle, J.; Hein, D.; Berger, R.

    2015-04-01

    Remote sensing in areas with extreme altitude differences is particularly challenging. In high mountain areas specifically, steep slopes result in reduced ground pixel resolution and degraded quality in the DEM. Exceptionally high brightness differences can in part no longer be imaged by the sensors. Nevertheless, detailed information about mountainous regions is highly relevant: time and again glacier lake outburst floods (GLOFs) and debris avalanches claim dozens of victims. Glaciers are sensitive to climate change and must be carefully monitored. Very detailed and accurate 3D maps provide a basic tool for the analysis of natural hazards and the monitoring of glacier surfaces in high mountain areas. There is a gap here, because the desired accuracies are often not achieved. It is for this reason that the DLR Institute of Optical Sensor Systems has developed a new aerial camera, the MACS-Himalaya. The measuring unit comprises four camera modules with an overall aperture angle of 116° perpendicular to the direction of flight. A High Dynamic Range (HDR) mode was introduced so that within a scene, bright areas such as sun-flooded snow and dark areas such as shaded stone can be imaged. In 2014, a measuring survey was performed on the Nepalese side of the Himalayas. The remote sensing system was carried by a Stemme S10 motor glider. Amongst other targets, the Seti Valley, Kali-Gandaki Valley and the Mt. Everest/Khumbu Region were imaged at heights up to 9,200 m. Products such as dense point clouds, DSMs and true orthomosaics with a ground pixel resolution of up to 15 cm were produced. Special challenges and gaps in the investigation of high mountain areas, approaches for resolution of these problems, the camera system and the state of evaluation are presented with examples.

  14. High spatial resolution Land Surface Temperature estimation over urban areas with uncertainty indices

    NASA Astrophysics Data System (ADS)

    Mitraka, Zina; Lazzarini, Michele; Doxani, Georgia; Del Frate, Fabio; Ghedira, Hosni

    2014-05-01

    Land Surface Temperature (LST) is a key variable for studying land surface processes and interactions with the atmosphere and it is listed in the Earth System Data Records (ESDRs) identified by international organizations like Global Climate Observing System. It is a valuable source of information for a range of topics in earth sciences and essential for urban climatology studies. Detailed, frequent and accurate LST mapping may support various urban applications, like the monitoring of urban heat island. Currently, no spaceborne instruments provide frequent thermal imagery at high spatial resolution, thus there is a need for synergistic algorithms that combine different kinds of data for LST retrieval. Moreover, knowing the confidence level of any satellite-derived product is highly important to the users, especially when referred to the urban environment, which is extremely heterogenic. The developed method employs spatial-spectral unmixing techniques for improving the spatial resolution of thermal measurements, combines spectral library information for emissivity estimation and applies a split-window algorithm to estimate LST with an uncertainty estimation inserted in the final product. A synergistic algorithm that utilizes the spatial information provided by visible and near-infrared measurements with more frequent low resolution thermal measurements provides excellent means for high spatial resolution LST estimation. Given the low spatial resolution of thermal infrared sensors, the measured radiation is a combination of radiances of different surface types. High spatial resolution information is used to quantify the different surface types in each pixel and then the measured radiance of each pixel is decomposed. The several difficulties in retrieving LST from space measurements, mainly related to the temperature-emissivity coupling and the atmospheric contribution to the thermal measurements, and the measurements themselves, introduce uncertainties in the final

  15. Accurate inference of shoot biomass from high-throughput images of cereal plants

    PubMed Central

    2011-01-01

    With the establishment of advanced technology facilities for high throughput plant phenotyping, the problem of estimating plant biomass of individual plants from their two dimensional images is becoming increasingly important. The approach predominantly cited in literature is to estimate the biomass of a plant as a linear function of the projected shoot area of plants in the images. However, the estimation error from this model, which is solely a function of projected shoot area, is large, prohibiting accurate estimation of the biomass of plants, particularly for the salt-stressed plants. In this paper, we propose a method based on plant specific weight for improving the accuracy of the linear model and reducing the estimation bias (the difference between actual shoot dry weight and the value of the shoot dry weight estimated with a predictive model). For the proposed method in this study, we modeled the plant shoot dry weight as a function of plant area and plant age. The data used for developing our model and comparing the results with the linear model were collected from a completely randomized block design experiment. A total of 320 plants from two bread wheat varieties were grown in a supported hydroponics system in a greenhouse. The plants were exposed to two levels of hydroponic salt treatments (NaCl at 0 and 100 mM) for 6 weeks. Five harvests were carried out. Each time 64 randomly selected plants were imaged and then harvested to measure the shoot fresh weight and shoot dry weight. The results of statistical analysis showed that with our proposed method, most of the observed variance can be explained, and moreover only a small difference between actual and estimated shoot dry weight was obtained. The low estimation bias indicates that our proposed method can be used to estimate biomass of individual plants regardless of what variety the plant is and what salt treatment has been applied. We validated this model on an independent set of barley data. The

  16. High-spatial-resolution nanoparticle x-ray fluorescence tomography

    NASA Astrophysics Data System (ADS)

    Larsson, Jakob C.; Vâgberg, William; Vogt, Carmen; Lundström, Ulf; Larsson, Daniel H.; Hertz, Hans M.

    2016-03-01

    X-ray fluorescence tomography (XFCT) has potential for high-resolution 3D molecular x-ray bio-imaging. In this technique the fluorescence signal from targeted nanoparticles (NPs) is measured, providing information about the spatial distribution and concentration of the NPs inside the object. However, present laboratory XFCT systems typically have limited spatial resolution (>1 mm) and suffer from long scan times and high radiation dose even at high NP concentrations, mainly due to low efficiency and poor signal-to-noise ratio. We have developed a laboratory XFCT system with high spatial resolution (sub-100 μm), low NP concentration and vastly decreased scan times and dose, opening up the possibilities for in-vivo small-animal imaging research. The system consists of a high-brightness liquid-metal-jet microfocus x-ray source, x-ray focusing optics and an energy-resolving photon-counting detector. By using the source's characteristic 24 keV line-emission together with carefully matched molybdenum nanoparticles the Compton background is greatly reduced, increasing the SNR. Each measurement provides information about the spatial distribution and concentration of the Mo nanoparticles. A filtered back-projection method is used to produce the final XFCT image.

  17. An accurate single-electron pump based on a highly tunable silicon quantum dot.

    PubMed

    Rossi, Alessandro; Tanttu, Tuomo; Tan, Kuan Yen; Iisakka, Ilkka; Zhao, Ruichen; Chan, Kok Wai; Tettamanzi, Giuseppe C; Rogge, Sven; Dzurak, Andrew S; Möttönen, Mikko

    2014-06-11

    Nanoscale single-electron pumps can be used to generate accurate currents, and can potentially serve to realize a new standard of electrical current based on elementary charge. Here, we use a silicon-based quantum dot with tunable tunnel barriers as an accurate source of quantized current. The charge transfer accuracy of our pump can be dramatically enhanced by controlling the electrostatic confinement of the dot using purposely engineered gate electrodes. Improvements in the operational robustness, as well as suppression of nonadiabatic transitions that reduce pumping accuracy, are achieved via small adjustments of the gate voltages. We can produce an output current in excess of 80 pA with experimentally determined relative uncertainty below 50 parts per million.

  18. Fast, Accurate RF Propagation Modeling and Simulation Tool for Highly Cluttered Environments

    SciTech Connect

    Kuruganti, Phani Teja

    2007-01-01

    As network centric warfare and distributed operations paradigms unfold, there is a need for robust, fast wireless network deployment tools. These tools must take into consideration the terrain of the operating theater, and facilitate specific modeling of end to end network performance based on accurate RF propagation predictions. It is well known that empirical models can not provide accurate, site specific predictions of radio channel behavior. In this paper an event-driven wave propagation simulation is proposed as a computationally efficient technique for predicting critical propagation characteristics of RF signals in cluttered environments. Convincing validation and simulator performance studies confirm the suitability of this method for indoor and urban area RF channel modeling. By integrating our RF propagation prediction tool, RCSIM, with popular packetlevel network simulators, we are able to construct an end to end network analysis tool for wireless networks operated in built-up urban areas.

  19. Revisit to three-dimensional percolation theory: Accurate analysis for highly stretchable conductive composite materials

    PubMed Central

    Kim, Sangwoo; Choi, Seongdae; Oh, Eunho; Byun, Junghwan; Kim, Hyunjong; Lee, Byeongmoon; Lee, Seunghwan; Hong, Yongtaek

    2016-01-01

    A percolation theory based on variation of conductive filler fraction has been widely used to explain the behavior of conductive composite materials under both small and large deformation conditions. However, it typically fails in properly analyzing the materials under the large deformation since the assumption may not be valid in such a case. Therefore, we proposed a new three-dimensional percolation theory by considering three key factors: nonlinear elasticity, precisely measured strain-dependent Poisson’s ratio, and strain-dependent percolation threshold. Digital image correlation (DIC) method was used to determine actual Poisson’s ratios at various strain levels, which were used to accurately estimate variation of conductive filler volume fraction under deformation. We also adopted strain-dependent percolation threshold caused by the filler re-location with deformation. When three key factors were considered, electrical performance change was accurately analyzed for composite materials with both isotropic and anisotropic mechanical properties. PMID:27694856

  20. Accurate determination of specific heat at high temperatures using the flash diffusivity method

    NASA Technical Reports Server (NTRS)

    Vandersande, J. W.; Zoltan, A.; Wood, C.

    1989-01-01

    The flash diffusivity method of Parker et al. (1961) was used to measure accurately the specific heat of test samples simultaneously with thermal diffusivity, thus obtaining the thermal conductivity of these materials directly. The accuracy of data obtained on two types of materials (n-type silicon-germanium alloys and niobium), was + or - 3 percent. It is shown that the method is applicable up to at least 1300 K.

  1. Identification of Microorganisms by High Resolution Tandem Mass Spectrometry with Accurate Statistical Significance.

    PubMed

    Alves, Gelio; Wang, Guanghui; Ogurtsov, Aleksey Y; Drake, Steven K; Gucek, Marjan; Suffredini, Anthony F; Sacks, David B; Yu, Yi-Kuo

    2016-02-01

    Correct and rapid identification of microorganisms is the key to the success of many important applications in health and safety, including, but not limited to, infection treatment, food safety, and biodefense. With the advance of mass spectrometry (MS) technology, the speed of identification can be greatly improved. However, the increasing number of microbes sequenced is challenging correct microbial identification because of the large number of choices present. To properly disentangle candidate microbes, one needs to go beyond apparent morphology or simple 'fingerprinting'; to correctly prioritize the candidate microbes, one needs to have accurate statistical significance in microbial identification. We meet these challenges by using peptidome profiles of microbes to better separate them and by designing an analysis method that yields accurate statistical significance. Here, we present an analysis pipeline that uses tandem MS (MS/MS) spectra for microbial identification or classification. We have demonstrated, using MS/MS data of 81 samples, each composed of a single known microorganism, that the proposed pipeline can correctly identify microorganisms at least at the genus and species levels. We have also shown that the proposed pipeline computes accurate statistical significances, i.e., E-values for identified peptides and unified E-values for identified microorganisms. The proposed analysis pipeline has been implemented in MiCId, a freely available software for Microorganism Classification and Identification. MiCId is available for download at http://www.ncbi.nlm.nih.gov/CBBresearch/Yu/downloads.html . Graphical Abstract ᅟ.

  2. Identification of Microorganisms by High Resolution Tandem Mass Spectrometry with Accurate Statistical Significance

    NASA Astrophysics Data System (ADS)

    Alves, Gelio; Wang, Guanghui; Ogurtsov, Aleksey Y.; Drake, Steven K.; Gucek, Marjan; Suffredini, Anthony F.; Sacks, David B.; Yu, Yi-Kuo

    2016-02-01

    Correct and rapid identification of microorganisms is the key to the success of many important applications in health and safety, including, but not limited to, infection treatment, food safety, and biodefense. With the advance of mass spectrometry (MS) technology, the speed of identification can be greatly improved. However, the increasing number of microbes sequenced is challenging correct microbial identification because of the large number of choices present. To properly disentangle candidate microbes, one needs to go beyond apparent morphology or simple `fingerprinting'; to correctly prioritize the candidate microbes, one needs to have accurate statistical significance in microbial identification. We meet these challenges by using peptidome profiles of microbes to better separate them and by designing an analysis method that yields accurate statistical significance. Here, we present an analysis pipeline that uses tandem MS (MS/MS) spectra for microbial identification or classification. We have demonstrated, using MS/MS data of 81 samples, each composed of a single known microorganism, that the proposed pipeline can correctly identify microorganisms at least at the genus and species levels. We have also shown that the proposed pipeline computes accurate statistical significances, i.e., E-values for identified peptides and unified E-values for identified microorganisms. The proposed analysis pipeline has been implemented in MiCId, a freely available software for Microorganism Classification and Identification. MiCId is available for download at http://www.ncbi.nlm.nih.gov/CBBresearch/Yu/downloads.html.

  3. Anatomically accurate high resolution modeling of human whole heart electromechanics: A strongly scalable algebraic multigrid solver method for nonlinear deformation

    PubMed Central

    Augustin, Christoph M.; Neic, Aurel; Liebmann, Manfred; Prassl, Anton J.; Niederer, Steven A.; Haase, Gundolf; Plank, Gernot

    2016-01-01

    Electromechanical (EM) models of the heart have been used successfully to study fundamental mechanisms underlying a heart beat in health and disease. However, in all modeling studies reported so far numerous simplifications were made in terms of representing biophysical details of cellular function and its heterogeneity, gross anatomy and tissue microstructure, as well as the bidirectional coupling between electrophysiology (EP) and tissue distension. One limiting factor is the employed spatial discretization methods which are not sufficiently flexible to accommodate complex geometries or resolve heterogeneities, but, even more importantly, the limited efficiency of the prevailing solver techniques which are not sufficiently scalable to deal with the incurring increase in degrees of freedom (DOF) when modeling cardiac electromechanics at high spatio-temporal resolution. This study reports on the development of a novel methodology for solving the nonlinear equation of finite elasticity using human whole organ models of cardiac electromechanics, discretized at a high para-cellular resolution. Three patient-specific, anatomically accurate, whole heart EM models were reconstructed from magnetic resonance (MR) scans at resolutions of 220 μm, 440 μm and 880 μm, yielding meshes of approximately 184.6, 24.4 and 3.7 million tetrahedral elements and 95.9, 13.2 and 2.1 million displacement DOF, respectively. The same mesh was used for discretizing the governing equations of both electrophysiology (EP) and nonlinear elasticity. A novel algebraic multigrid (AMG) preconditioner for an iterative Krylov solver was developed to deal with the resulting computational load. The AMG preconditioner was designed under the primary objective of achieving favorable strong scaling characteristics for both setup and solution runtimes, as this is key for exploiting current high performance computing hardware. Benchmark results using the 220 μm, 440 μm and 880 μm meshes demonstrate

  4. Anatomically accurate high resolution modeling of human whole heart electromechanics: A strongly scalable algebraic multigrid solver method for nonlinear deformation

    NASA Astrophysics Data System (ADS)

    Augustin, Christoph M.; Neic, Aurel; Liebmann, Manfred; Prassl, Anton J.; Niederer, Steven A.; Haase, Gundolf; Plank, Gernot

    2016-01-01

    Electromechanical (EM) models of the heart have been used successfully to study fundamental mechanisms underlying a heart beat in health and disease. However, in all modeling studies reported so far numerous simplifications were made in terms of representing biophysical details of cellular function and its heterogeneity, gross anatomy and tissue microstructure, as well as the bidirectional coupling between electrophysiology (EP) and tissue distension. One limiting factor is the employed spatial discretization methods which are not sufficiently flexible to accommodate complex geometries or resolve heterogeneities, but, even more importantly, the limited efficiency of the prevailing solver techniques which is not sufficiently scalable to deal with the incurring increase in degrees of freedom (DOF) when modeling cardiac electromechanics at high spatio-temporal resolution. This study reports on the development of a novel methodology for solving the nonlinear equation of finite elasticity using human whole organ models of cardiac electromechanics, discretized at a high para-cellular resolution. Three patient-specific, anatomically accurate, whole heart EM models were reconstructed from magnetic resonance (MR) scans at resolutions of 220 μm, 440 μm and 880 μm, yielding meshes of approximately 184.6, 24.4 and 3.7 million tetrahedral elements and 95.9, 13.2 and 2.1 million displacement DOF, respectively. The same mesh was used for discretizing the governing equations of both electrophysiology (EP) and nonlinear elasticity. A novel algebraic multigrid (AMG) preconditioner for an iterative Krylov solver was developed to deal with the resulting computational load. The AMG preconditioner was designed under the primary objective of achieving favorable strong scaling characteristics for both setup and solution runtimes, as this is key for exploiting current high performance computing hardware. Benchmark results using the 220 μm, 440 μm and 880 μm meshes demonstrate

  5. High spatial-resolution IRAS images of M51

    NASA Technical Reports Server (NTRS)

    Canterna, R.; Hackwell, John A.; Grasdalen, Gary L.

    1990-01-01

    High spatial-resolution (approx. equal to 30 seconds) images of M51 in the four Infrared Astronomy Satellite (IRAS) bands (12, 25, 60, and 100 microns) have been obtained. The spatial variation in flux in all four bands is coincident with the spiral features seen in H alpha and 6 cm with a few exceptions. In the nuclear region (4 minutes) the position of the peak of maximum intensity shifts in relation to the visual nucleus: it is coincident with the nucleus at 12 microns, shifts approximately 45 seconds to south-southwest, and is 45 seconds northwest of the nucleus at 60 and 100 microns.

  6. A Very High Spatial Resolution Detector for Small Animal PET

    SciTech Connect

    Kanai Shah, M.S.

    2007-03-06

    Positron Emission Tomography (PET) is an in vivo analog of autoradiography and has the potential to become a powerful new tool in imaging biological processes in small laboratory animals. PET imaging of small animals can provide unique information that can help in advancement of human disease models as well as drug development. Clinical PET scanners used for human imaging are bulky, expensive and do not have adequate spatial resolution for small animal studies. Hence, dedicated, low cost instruments are required for conducting small animal studies with higher spatial resolution than what is currently achieved with clinical as well as dedicated small animal PET scanners. The goal of the proposed project is to investigate a new all solid-state detector design for small animal PET imaging. Exceptionally high spatial resolution, good timing resolution, and excellent energy resolution are expected from the proposed detector design. The Phase I project was aimed at demonstrating the feasibility of producing high performance solid-state detectors that provide high sensitivity, spatial resolution, and timing characteristics. Energy resolution characteristics of the new detector were also investigated. The goal of the Phase II project is to advance the promising solid-state detector technology for small animal PET and determine its full potential. Detectors modules will be built and characterized and finally, a bench-top small animal PET system will be assembled and evaluated.

  7. Going Rogue in the Spatial Cuing Paradigm: High Spatial Validity Is Insufficient to Elicit Voluntary Shifts of Attention

    ERIC Educational Resources Information Center

    Davis, Gregory J.; Gibson, Bradley S.

    2012-01-01

    Voluntary shifts of attention are often motivated in experimental contexts by using well-known symbols that accurately predict the direction of targets. The authors report 3 experiments, which showed that the presentation of predictive spatial information does not provide sufficient incentive to elicit voluntary shifts of attention. For instance,…

  8. Mapping Spatial Variability in Health and Wealth Indicators in Accra, Ghana Using High Spatial Resolution Imagery

    NASA Astrophysics Data System (ADS)

    Engstrom, R.; Ashcroft, E.

    2014-12-01

    There has been a tremendous amount of research conducted that examines disparities in health and wealth of persons between urban and rural areas however, relatively little research has been undertaken to examine variations within urban areas. A major limitation to elucidating differences with urban areas is the lack of social and demographic data at a sufficiently high spatial resolution to determine these differences. Generally the only available data that contain this information are census data which are collected at most every ten years and are often difficult to obtain at a high enough spatial resolution to allow for examining in depth variability in health and wealth indicators at high spatial resolutions, especially in developing countries. High spatial resolution satellite imagery may be able to provide timely and synoptic information that is related to health and wealth variability within a city. In this study we use two dates of Quickbird imagery (2003 and 2010) classified into the vegetation-impervious surface-soil (VIS) model introduced by Ridd (1995). For 2003 we only have partial coverage of the city, while for 2010 we have a mosaic, which covers the entire city of Accra, Ghana. Variations in the VIS values represent the physical variations within the city and these are compared to variations in economic, and/or sociodemographic data derived from the 2000 Ghanaian census at two spatial resolutions, the enumeration area (approximately US Census Tract) and the neighborhood for the city. Results indicate a significant correlation between both vegetation and impervious surface to type of cooking fuel used in the household, population density, housing density, availability of sewers, cooking space usage, and other variables. The correlations are generally stronger at the neighborhood level and the relationships are stable through time and space. Overall, the results indicate that information derived from high resolution satellite data is related to

  9. CRISTA, a cryogenic IR telescope with high spatial resolution

    SciTech Connect

    Barthol, P.; Grossmann, K.U.; Offermann, D.

    1994-12-31

    A limb sounding cryogenic IR telescope named CRISTA (CRyogenic Infrared Spectrometers and Telescopes for the Atmosphere) has been developed to study dynamic disturbances in the middle atmosphere with high spatial (horizontal and vertical) resolution. For this purpose, it measures mid and far IR emissions of several trace constituents at earth`s limb using three independent telescopes with high off-axis rejection performance. Height profiles are derived from simultaneous scans of the three telescope LOS. The radiation received is spectrally analyzed by gating spectrometers followed by Si:Ga and Ge:Ga detectors. High sensitivity together with improved spatial resolution leads to a spacing of only 500 km to 600 km between two adjacent measurement points and thus to a far more detailed picture of the atmosphere compared to present day satellite experiments. CRISTA, integrated in the free-flyer ASTROSPAS, will be launched 1994 by the Space Shuttle for a short duration mission and will be part of ATLAS 3.

  10. Distinguishing highly confident accurate and inaccurate memory: insights about relevant and irrelevant influences on memory confidence.

    PubMed

    Chua, Elizabeth F; Hannula, Deborah E; Ranganath, Charan

    2012-01-01

    It is generally believed that accuracy and confidence in one's memory are related, but there are many instances when they diverge. Accordingly it is important to disentangle the factors that contribute to memory accuracy and confidence, especially those factors that contribute to confidence, but not accuracy. We used eye movements to separately measure fluent cue processing, the target recognition experience, and relative evidence assessment on recognition confidence and accuracy. Eye movements were monitored during a face-scene associative recognition task, in which participants first saw a scene cue, followed by a forced-choice recognition test for the associated face, with confidence ratings. Eye movement indices of the target recognition experience were largely indicative of accuracy, and showed a relationship to confidence for accurate decisions. In contrast, eye movements during the scene cue raised the possibility that more fluent cue processing was related to higher confidence for both accurate and inaccurate recognition decisions. In a second experiment we manipulated cue familiarity, and therefore cue fluency. Participants showed higher confidence for cue-target associations for when the cue was more familiar, especially for incorrect responses. These results suggest that over-reliance on cue familiarity and under-reliance on the target recognition experience may lead to erroneous confidence.

  11. Development of an unmanned aerial vehicle-based spray system for highly accurate site-specific application

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Application of crop production and protection materials is a crucial component in the high productivity of American agriculture. Agricultural chemical application is frequently needed at a specific time and location for accurate site-specific management of crop pests. Piloted aircrafts that carry ...

  12. Accurate prediction of the linear viscoelastic properties of highly entangled mono and bidisperse polymer melts.

    PubMed

    Stephanou, Pavlos S; Mavrantzas, Vlasis G

    2014-06-01

    We present a hierarchical computational methodology which permits the accurate prediction of the linear viscoelastic properties of entangled polymer melts directly from the chemical structure, chemical composition, and molecular architecture of the constituent chains. The method entails three steps: execution of long molecular dynamics simulations with moderately entangled polymer melts, self-consistent mapping of the accumulated trajectories onto a tube model and parameterization or fine-tuning of the model on the basis of detailed simulation data, and use of the modified tube model to predict the linear viscoelastic properties of significantly higher molecular weight (MW) melts of the same polymer. Predictions are reported for the zero-shear-rate viscosity η0 and the spectra of storage G'(ω) and loss G″(ω) moduli for several mono and bidisperse cis- and trans-1,4 polybutadiene melts as well as for their MW dependence, and are found to be in remarkable agreement with experimentally measured rheological data. PMID:24908037

  13. Accurate prediction of the linear viscoelastic properties of highly entangled mono and bidisperse polymer melts

    NASA Astrophysics Data System (ADS)

    Stephanou, Pavlos S.; Mavrantzas, Vlasis G.

    2014-06-01

    We present a hierarchical computational methodology which permits the accurate prediction of the linear viscoelastic properties of entangled polymer melts directly from the chemical structure, chemical composition, and molecular architecture of the constituent chains. The method entails three steps: execution of long molecular dynamics simulations with moderately entangled polymer melts, self-consistent mapping of the accumulated trajectories onto a tube model and parameterization or fine-tuning of the model on the basis of detailed simulation data, and use of the modified tube model to predict the linear viscoelastic properties of significantly higher molecular weight (MW) melts of the same polymer. Predictions are reported for the zero-shear-rate viscosity η0 and the spectra of storage G'(ω) and loss G″(ω) moduli for several mono and bidisperse cis- and trans-1,4 polybutadiene melts as well as for their MW dependence, and are found to be in remarkable agreement with experimentally measured rheological data.

  14. Highly accurate apparatus for electrochemical characterization of the felt electrodes used in redox flow batteries

    NASA Astrophysics Data System (ADS)

    Park, Jong Ho; Park, Jung Jin; Park, O. Ok; Jin, Chang-Soo; Yang, Jung Hoon

    2016-04-01

    Because of the rise in renewable energy use, the redox flow battery (RFB) has attracted extensive attention as an energy storage system. Thus, many studies have focused on improving the performance of the felt electrodes used in RFBs. However, existing analysis cells are unsuitable for characterizing felt electrodes because of their complex 3-dimensional structure. Analysis is also greatly affected by the measurement conditions, viz. compression ratio, contact area, and contact strength between the felt and current collector. To address the growing need for practical analytical apparatus, we report a new analysis cell for accurate electrochemical characterization of felt electrodes under various conditions, and compare it with previous ones. In this cell, the measurement conditions can be exhaustively controlled with a compression supporter. The cell showed excellent reproducibility in cyclic voltammetry analysis and the results agreed well with actual RFB charge-discharge performance.

  15. Spatial augmented reality based high accuracy human face projection

    NASA Astrophysics Data System (ADS)

    Li, Dong; Xie, Jinghui; Li, Yufeng; Weng, Dongdong; Liu, Yue

    2015-08-01

    This paper discusses the imaging principles and the technical difficulties of spatial augmented reality based human face projection. A novel geometry correction method is proposed to realize fast, high-accuracy face model projection. Using a depth camera to reconstruct the projected object, the relative position from the rendered model to the projector can be accessed and the initial projection image is generated. Then the projected image is distorted by using Bezier interpolation to guarantee that the projected texture matches with the object surface. The proposed method is under a simple process flow and can achieve high perception registration of virtual and real object. In addition, this method has a good performance in the condition that the reconstructed model is not exactly same with the rendered virtual model which extends its application area in the spatial augmented reality based human face projection.

  16. HIGH SPATIAL RESOLUTION OBSERVATIONS OF LOOPS IN THE SOLAR CORONA

    SciTech Connect

    Brooks, David H.; Ugarte-Urra, Ignacio; Warren, Harry P.; Winebarger, Amy R.

    2013-08-01

    Understanding how the solar corona is structured is of fundamental importance to determine how the Sun's upper atmosphere is heated to high temperatures. Recent spectroscopic studies have suggested that an instrument with a spatial resolution of 200 km or better is necessary to resolve coronal loops. The High Resolution Coronal Imager (Hi-C) achieved this performance on a rocket flight in 2012 July. We use Hi-C data to measure the Gaussian widths of 91 loops observed in the solar corona and find a distribution that peaks at about 270 km. We also use Atmospheric Imaging Assembly data for a subset of these loops and find temperature distributions that are generally very narrow. These observations provide further evidence that loops in the solar corona are often structured at a scale of several hundred kilometers, well above the spatial scale of many proposed physical mechanisms.

  17. Mapping urban and peri-urban agriculture using high spatial resolution satellite data

    NASA Astrophysics Data System (ADS)

    Forster, Dionys; Buehler, Yves; Kellenberger, Tobias W.

    2009-03-01

    In rapidly changing peri-urban environments where biophysical and socio-economic processes lead to spatial fragmentation of agricultural land, remote sensing offers an efficient tool to collect land cover/land use (LCLU) data for decision-making. Compared to traditional pixel-based approaches, remote sensing with object-based classification methods is reported to achieve improved classification results in complex heterogeneous landscapes. This study assessed the usefulness of object-oriented analysis of Quickbird high spatial resolution satellite data to classify urban and peri-urban agriculture in a limited peri-urban area of Hanoi, Vietnam. The results revealed that segmentation was essential in developing the object-oriented classification approach. Accurate segmentation of shape and size of an object enhanced classification with spectral, textural, morphological, and topological features. A qualitative, visual comparison of the classification results showed successful localisation and identification of most LCLU classes. Quantitative evaluation was conducted with a classification error matrix reaching an overall accuracy of 67% and a kappa coefficient of 0.61. In general, object-oriented classification of high spatial resolution satellite data proved the promising approach for LCLU analysis at village level. Capturing small-scale urban and peri-urban agricultural diversity offers a considerable potential for environmental monitoring. Challenges remain with the delineation of field boundaries and LCLU diversity on more spatially extensive datasets.

  18. Developing a second generation Laue lens prototype: high-reflectivity crystals and accurate assembly

    NASA Astrophysics Data System (ADS)

    Barrière, Nicolas M.; Tomsick, John A.; Boggs, Steven E.; Lowell, Alexander; von Ballmoos, Peter

    2011-09-01

    Laue lenses are an emerging technology that will enhance gamma-ray telescope sensitivity by one to two orders of magnitude in selected energy bands of the ~100 keV to ~1.5 MeV range. This optic would be particularly well adapted to the observation of faint gamma ray lines, as required for the study of Supernovae and Galactic positron annihilation. It could also prove very useful for the study of hard X-ray tails from a variety of compact objects, especially making a difference by providing sufficient sensitivity for polarization to be measured by the focal plane detector. Our group has been addressing the two key issues relevant to improve performance with respect to the first generation of Laue lens prototypes: obtaining large numbers of efficient crystals and developing a method to fix them with accurate orientation and dense packing factor onto a substrate. We present preliminary results of an on-going study aiming to enable a large number of crystals suitable for diffraction at energies above 500 keV. In addition, we show the first results of the Laue lens prototype assembled using our beamline at SSL/UC Berkeley, which demonstrates our ability to orient and glue crystals with accuracy of a few arcsec, as required for an efficient Laue lens telescope.

  19. A highly accurate method for the determination of mass and center of mass of a spacecraft

    NASA Technical Reports Server (NTRS)

    Chow, E. Y.; Trubert, M. R.; Egwuatu, A.

    1978-01-01

    An extremely accurate method for the measurement of mass and the lateral center of mass of a spacecraft has been developed. The method was needed for the Voyager spacecraft mission requirement which limited the uncertainty in the knowledge of lateral center of mass of the spacecraft system weighing 750 kg to be less than 1.0 mm (0.04 in.). The method consists of using three load cells symmetrically located at 120 deg apart on a turntable with respect to the vertical axis of the spacecraft and making six measurements for each load cell. These six measurements are taken by cyclic rotations of the load cell turntable and of the spacecraft, about the vertical axis of the measurement fixture. This method eliminates all alignment, leveling, and load cell calibration errors for the lateral center of mass determination, and permits a statistical best fit of the measurement data. An associated data reduction computer program called MASCM has been written to implement this method and has been used for the Voyager spacecraft.

  20. High- and low-pressure pneumotachometers measure respiration rates accurately in adverse environments

    NASA Technical Reports Server (NTRS)

    Fagot, R. J.; Mc Donald, R. T.; Roman, J. A.

    1968-01-01

    Respiration-rate transducers in the form of pneumotachometers measure respiration rates of pilots operating high performance research aircraft. In each low pressure or high pressure oxygen system a sensor is placed in series with the pilots oxygen supply line to detect gas flow accompanying respiration.

  1. Automatically high accurate and efficient photomask defects management solution for advanced lithography manufacture

    NASA Astrophysics Data System (ADS)

    Zhu, Jun; Chen, Lijun; Ma, Lantao; Li, Dejian; Jiang, Wei; Pan, Lihong; Shen, Huiting; Jia, Hongmin; Hsiang, Chingyun; Cheng, Guojie; Ling, Li; Chen, Shijie; Wang, Jun; Liao, Wenkui; Zhang, Gary

    2014-04-01

    Defect review is a time consuming job. Human error makes result inconsistent. The defects located on don't care area would not hurt the yield and no need to review them such as defects on dark area. However, critical area defects can impact yield dramatically and need more attention to review them such as defects on clear area. With decrease in integrated circuit dimensions, mask defects are always thousands detected during inspection even more. Traditional manual or simple classification approaches are unable to meet efficient and accuracy requirement. This paper focuses on automatic defect management and classification solution using image output of Lasertec inspection equipment and Anchor pattern centric image process technology. The number of mask defect found during an inspection is always in the range of thousands or even more. This system can handle large number defects with quick and accurate defect classification result. Our experiment includes Die to Die and Single Die modes. The classification accuracy can reach 87.4% and 93.3%. No critical or printable defects are missing in our test cases. The missing classification defects are 0.25% and 0.24% in Die to Die mode and Single Die mode. This kind of missing rate is encouraging and acceptable to apply on production line. The result can be output and reloaded back to inspection machine to have further review. This step helps users to validate some unsure defects with clear and magnification images when captured images can't provide enough information to make judgment. This system effectively reduces expensive inline defect review time. As a fully inline automated defect management solution, the system could be compatible with current inspection approach and integrated with optical simulation even scoring function and guide wafer level defect inspection.

  2. An RPC-PET prototype with high spatial resolution

    NASA Astrophysics Data System (ADS)

    Blanco, A.; Carolino, N.; Correia, C. M. B. A.; Ferreira Marques, R.; Fonte, P.; González-Díaz, D.; Lindote, A.; Lopes, M. I.; Macedo, M. P.; Policarpo, A.

    2004-11-01

    A small positron emission tomography system, based on the timing RPC technology has been built and tested. This first prototype is aimed at validating the expectations, derived from simulations, of a very high spatial resolution, which could be of value for the imaging of small animals. The system is composed of two counting heads, able to measure the photon interaction point in two dimensions, the transaxial dimension and the Depth of Interaction. Each head is composed of 16 independent stacked RPCs made from copper and glass (anode) electrodes. Point-like 22Na sources were so far reconstructed, using the standard filtered back-projection algorithm, with a spatial accuracy of 0.6 mm FWHM, free of parallax error.

  3. High-resolution TFT-LCD for spatial light modulator

    NASA Astrophysics Data System (ADS)

    Lee, JaeWon; Kim, Yong-Hae; Byun, Chun-Won; Pi, Jae-Eun; Oh, Himchan; Kim, GiHeon; Lee, Myung-Lae; Chu, Hye-Yong; Hwang, Chi-Sun

    2014-06-01

    SLM with very fine pixel pitch is needed for the holographic display system. Among various kinds of SLMs, commercially available high resolution LCoS has been widely used as a spatial light modulator. But the size of commercially available LCoS SLM is limited because the manufacturing technology of LCoS is based on the semiconductor process developed on small size Si wafer. Recently very high resolution flat panel display panel (~500ppi) was developed as a "retina display". Until now, the pixel pitch of flat panel display is several times larger than the pixel pitch of LCoS. But considering the possibility of shrink down the pixel pitch with advanced lithographic tools, the application of flat panel display will make it possible to build a SLM with high spatial bandwidth product. We simulated High resolution TFT-LCD panel on glass substrate using oxide semiconductor TFT with pixel pitch of 20um. And we considered phase modulation behavior of LC(ECB) mode. The TFT-LCD panel is reflective type with 4-metal structure with organic planarization layers. The technical challenge for high resolution large area SLM will be discussed with very fine pixel.

  4. A polymer visualization system with accurate heating and cooling control and high-speed imaging.

    PubMed

    Wong, Anson; Guo, Yanting; Park, Chul B; Zhou, Nan Q

    2015-04-23

    A visualization system to observe crystal and bubble formation in polymers under high temperature and pressure has been developed. Using this system, polymer can be subjected to a programmable thermal treatment to simulate the process in high pressure differential scanning calorimetry (HPDSC). With a high-temperature/high-pressure view-cell unit, this system enables in situ observation of crystal formation in semi-crystalline polymers to complement thermal analyses with HPDSC. The high-speed recording capability of the camera not only allows detailed recording of crystal formation, it also enables in situ capture of plastic foaming processes with a high temporal resolution. To demonstrate the system's capability, crystal formation and foaming processes of polypropylene/carbon dioxide systems were examined. It was observed that crystals nucleated and grew into spherulites, and they grew at faster rates as temperature decreased. This observation agrees with the crystallinity measurement obtained with the HPDSC. Cell nucleation first occurred at crystals' boundaries due to CO₂ exclusion from crystal growth fronts. Subsequently, cells were nucleated around the existing ones due to tensile stresses generated in the constrained amorphous regions between networks of crystals.

  5. A Polymer Visualization System with Accurate Heating and Cooling Control and High-Speed Imaging

    PubMed Central

    Wong, Anson; Guo, Yanting; Park, Chul B.; Zhou, Nan Q.

    2015-01-01

    A visualization system to observe crystal and bubble formation in polymers under high temperature and pressure has been developed. Using this system, polymer can be subjected to a programmable thermal treatment to simulate the process in high pressure differential scanning calorimetry (HPDSC). With a high-temperature/high-pressure view-cell unit, this system enables in situ observation of crystal formation in semi-crystalline polymers to complement thermal analyses with HPDSC. The high-speed recording capability of the camera not only allows detailed recording of crystal formation, it also enables in situ capture of plastic foaming processes with a high temporal resolution. To demonstrate the system’s capability, crystal formation and foaming processes of polypropylene/carbon dioxide systems were examined. It was observed that crystals nucleated and grew into spherulites, and they grew at faster rates as temperature decreased. This observation agrees with the crystallinity measurement obtained with the HPDSC. Cell nucleation first occurred at crystals’ boundaries due to CO2 exclusion from crystal growth fronts. Subsequently, cells were nucleated around the existing ones due to tensile stresses generated in the constrained amorphous regions between networks of crystals. PMID:25915031

  6. Polyallelic structural variants can provide accurate, highly informative genetic markers focused on diagnosis and therapeutic targets: Accuracy vs. Precision.

    PubMed

    Roses, A D

    2016-02-01

    Structural variants (SVs) include all insertions, deletions, and rearrangements in the genome, with several common types of nucleotide repeats including single sequence repeats, short tandem repeats, and insertion-deletion length variants. Polyallelic SVs provide highly informative markers for association studies with well-phenotyped cohorts. SVs can influence gene regulation by affecting epigenetics, transcription, splicing, and/or translation. Accurate assays of polyallelic SV loci are required to define the range and allele frequency of variable length alleles. PMID:26517180

  7. Kashima RAy-Tracing Service (KARATS) for high accurate GNSS positioning

    NASA Astrophysics Data System (ADS)

    Ichikawa, R.; Hobiger, T.; Hasegawa, S.; Tsutsumi, M.; Koyama, Y.; Kondo, T.

    2010-12-01

    Radio signal delays associated with the neutral atmosphere are one of the major error sources of space geodesy such as GPS, GLONASS, GALILEO, VLBI, In-SAR measurements. We have developed a state-of-art tool to estimate the atmospheric path delays by ray-tracing through JMA meso-scale analysis (MANAL data) data. The tools, which we have named 'KAshima RAytracing Tools (KARAT)', are capable of calculating total slant delays and ray-bending angles considering real atmospheric phenomena. Numerical weather models such as MANAL data have undergone a significant improvement of accuracy and spatial resolution, which makes it feasible to utilize them for the correction of atmosphere excess path delays. In the previous studies for evaluating KARAT performance, the KARAT solutions are slightly better than the solutions using VMF1 and GMF with linear gradient model for horizontal and height positions. Based on these results we have started the web-based online service, 'KAshima RAytracing Service (KARATS)' for providing the atmospheric delay correction of RINEX files on Jan 27th, 2010. The KARATS receives user's RINEX data via a proper web site (http://vps.nict.go.jp/karats/index.html) and processes user's data files using KARAT for reducing atmospheric slant delays. The reduced RINEX files are archived in the specific directory for each user on the KARATS server. Once the processing is finished the information of data archive is sent privately via email to each user. If user want to process a large amount of data files, user can prepare own server which archives them. The KARATS can get these files from the user's server using GNU ¥emph{wget} and performs ray-traced corrections. We will present a brief status of the KARATS and summarize first experiences gained after this service went operational in December 2009. In addition, we will also demonstrate the newest KARAT performance based on the 5km MANAL data which has been operational from April 7th, 2009 and an outlook on

  8. RTCR: a pipeline for complete and accurate recovery of T cell repertoires from high throughput sequencing data

    PubMed Central

    Gerritsen, Bram; Pandit, Aridaman; Andeweg, Arno C.; de Boer, Rob J.

    2016-01-01

    Motivation: High Throughput Sequencing (HTS) has enabled researchers to probe the human T cell receptor (TCR) repertoire, which consists of many rare sequences. Distinguishing between true but rare TCR sequences and variants generated by polymerase chain reaction (PCR) and sequencing errors remains a formidable challenge. The conventional approach to handle errors is to remove low quality reads, and/or rare TCR sequences. Such filtering discards a large number of true and often rare TCR sequences. However, accurate identification and quantification of rare TCR sequences is essential for repertoire diversity estimation. Results: We devised a pipeline, called Recover TCR (RTCR), that accurately recovers TCR sequences, including rare TCR sequences, from HTS data (including barcoded data) even at low coverage. RTCR employs a data-driven statistical model to rectify PCR and sequencing errors in an adaptive manner. Using simulations, we demonstrate that RTCR can easily adapt to the error profiles of different types of sequencers and exhibits consistently high recall and high precision even at low coverages where other pipelines perform poorly. Using published real data, we show that RTCR accurately resolves sequencing errors and outperforms all other pipelines. Availability and Implementation: The RTCR pipeline is implemented in Python (v2.7) and C and is freely available at http://uubram.github.io/RTCR/along with documentation and examples of typical usage. Contact: b.gerritsen@uu.nl PMID:27324198

  9. High-throughput Accurate-wavelength Lens-based Visible Spectrometera

    SciTech Connect

    Ronald E. Belll and Filippo Scotti

    2010-06-04

    A scanning visible spectrometer has been prototyped to complement fixed-wavelength transmission grating spectrometers for charge exchange recombination spectroscopy. Fast f/1.8 200 mm commercial lenses are used with a large 2160 mm-1 grating for high throughput. A stepping-motor controlled sine drive positions the grating, which is mounted on a precision rotary table. A high-resolution optical encoder on the grating stage allows the grating angle to be measured with an absolute accuracy of 0.075 arcsec, corresponding to a wavelength error ≤ 0.005 Å. At this precision, changes in grating groove density due to thermal expansion and variations in the refractive index of air are important. An automated calibration procedure determines all relevant spectrometer parameters to high accuracy. Changes in bulk grating temperature, atmospheric temperature and pressure are monitored between the time of calibration and the time of measurement to insure a persistent wavelength calibration

  10. High spatial resolution measurements in a single stage ram accelerator

    NASA Technical Reports Server (NTRS)

    Hinkey, J. B.; Burnham, E. A.; Bruckner, A. P.

    1992-01-01

    High spatial resolution experimental tube wall pressure measurements of ram accelerator gas dynamic phenomena are presented in this paper. The ram accelerator is a ramjet-in-tube device which operates in a manner similar to that of a conventional ramjet. The projectile resembles the centerbody of a ramjet and travels supersonically through a tube filled with a combustible gaseous mixture, with the tube acting as the outer cowling. Pressure data are recorded as the projectile passes by sensors mounted in the tube wall at various locations along the tube. Utilization of special highly instrumented sections of tube has allowed the recording of gas dynamic phenomena with high resolution. High spatial resolution tube wall pressure data from the three regimes of propulsion studied to date (subdetonative, transdetonative, and superdetonative) in a single stage gas mixture are presented and reveal the three-dimensional character of the flow field induced by projectile fins and the canting of the fins and the canting of the projectile body relative to the tube wall. Also presented for comparison to the experimental data are calculations made with an inviscid, three-dimensional CFD code. The knowledge gained from these experiments and simulations is useful in understanding the underlying nature of ram accelerator propulsive regimes, as well as assisting in the validation of three-dimensional CFD coded which model unsteady, chemically reactive flows.

  11. Implementing an Inexpensive and Accurate Introductory Gas Density Activity with High School Students

    ERIC Educational Resources Information Center

    Cunningham, W. Patrick; Joseph, Christopher; Morey, Samantha; Santos Romo, Ana; Shope, Cullen; Strang, Jonathan; Yang, Kevin

    2015-01-01

    A simplified activity examined gas density while employing cost-efficient syringes in place of traditional glass bulbs. The exercise measured the density of methane, with very good accuracy and precision, in both first-year high school and AP chemistry settings. The participating students were tasked with finding the density of a gas. The…

  12. Solid rocket booster internal flow analysis by highly accurate adaptive computational methods

    NASA Technical Reports Server (NTRS)

    Huang, C. Y.; Tworzydlo, W.; Oden, J. T.; Bass, J. M.; Cullen, C.; Vadaketh, S.

    1991-01-01

    The primary objective of this project was to develop an adaptive finite element flow solver for simulating internal flows in the solid rocket booster. Described here is a unique flow simulator code for analyzing highly complex flow phenomena in the solid rocket booster. New methodologies and features incorporated into this analysis tool are described.

  13. Investigating the Capability of High Resolution ALSM to Provide Accurate Watershed Delineation and Stream Network Data

    NASA Astrophysics Data System (ADS)

    Sedighi, A.; Slatton, K. C.; Hatfield, K.

    2007-05-01

    The development of geographic information systems (GIS) and digital elevation models (DEMs) has provided an opportunity to describe the pathways of water movement in a watershed. Adequate DEM resolution is of high importance in stream network detection. Local, state, and federal agencies have relied on US Geological Survey 1:24,000 scale topographic maps for information on stream networks for planning, management, and regulatory programs related to streams. DEM creation techniques that avoid map contours as the source of digital heights can improve watershed delineation and stream network data quality. Airborne Laser Swath Mapping (ALSM) technology (also referred to as LIDAR) provides DEMs of fine resolution and high accuracy. However, there are shortcomings in using both low resolution and high resolution DEMs. The focus of this work will be in the unique aspects of using ALSM data in watershed delineation and stream network mapping, in comparison to the other sources of DEM. In particular the reliability of both input data and output results of stream network using different resolutions will be evaluated. In this study, stream location resulting from high-resolution ALSM and low- resolution NED are compared to ground truth locations of the stream in Hogtown Creek Watershed, located in Gainesville, Florida. This study shows that ALSM-derived models are more successful at delineating streams and at locating them in their topographically correct position as compared to lower resolution DEMs. However, high resolution ALSM data produce artifacts that can affect the flow of water as predicted by stream network algorithms. Methods for overcoming the challenges with regard to ALSM data in stream network detection are presented.

  14. Development and operation of a high-throughput accurate-wavelength lens-based spectrometer

    NASA Astrophysics Data System (ADS)

    Bell, Ronald E.

    2014-11-01

    A high-throughput spectrometer for the 400-820 nm wavelength range has been developed for charge exchange recombination spectroscopy or general spectroscopy. A large 2160 mm-1 grating is matched with fast f/1.8 200 mm lenses, which provide stigmatic imaging. A precision optical encoder measures the grating angle with an accuracy ≤0.075 arc sec. A high quantum efficiency low-etaloning CCD detector allows operation at longer wavelengths. A patch panel allows input fibers to interface with interchangeable fiber holders that attach to a kinematic mount at the entrance slit. Computer-controlled hardware allows automated control of wavelength, timing, f-number, automated data collection, and wavelength calibration.

  15. Development and Operation of High-throughput Accurate-wavelength Lens-based Spectrometer

    SciTech Connect

    Bell, Ronald E

    2014-07-01

    A high-throughput spectrometer for the 400-820 nm wavelength range has been developed for charge exchange recombination spectroscopy or general spectroscopy. A large 2160 mm-1 grating is matched with fast f /1.8 200 mm lenses, which provide stigmatic imaging. A precision optical encoder measures the grating angle with an accuracy < 0.075 arc seconds. A high quantum efficiency low-etaloning CCD detector allows operation at longer wavelengths. A patch panel allows input fibers to interface with interchangeable fiber holders that attach to a kinematic mount behind the entrance slit. Computer-controlled hardware allows automated control of wavelength, timing, f-number, automated data collection, and wavelength calibration.

  16. Development and operation of a high-throughput accurate-wavelength lens-based spectrometera)

    DOE PAGES

    Bell, Ronald E.

    2014-07-11

    A high-throughput spectrometer for the 400-820 nm wavelength range has been developed for charge exchange recombination spectroscopy or general spectroscopy. A large 2160 mm-1 grating is matched with fast f /1.8 200 mm lenses, which provide stigmatic imaging. A precision optical encoder measures the grating angle with an accuracy ≤ 0.075 arc seconds. A high quantum efficiency low-etaloning CCD detector allows operation at longer wavelengths. A patch panel allows input fibers to interface with interchangeable fiber holders that attach to a kinematic mount behind the entrance slit. The computer-controlled hardware allows automated control of wavelength, timing, f-number, automated data collection,more » and wavelength calibration.« less

  17. Design and operation of a highly sensitive and accurate laser calorimeter for low-absorbtion materials

    NASA Astrophysics Data System (ADS)

    Kawate, Etsuo; Hanssen, Leonard M.; Kaplan, Simon G.; Datla, Raju V.

    1998-10-01

    This work surveys techniques to measure the absorption coefficient of low absorption materials. A laser calorimeter is being developed with a sensitivity goal of (1 +/- 0.2)X 10-5 cm-1 with one watt of laser power using a CO2 laser (9 (mu) m to 11 (mu) m), a CO laser (5 (mu) m to 8 (mu) m), a He-Ne laser (3.39 (mu) m), and a pumped OPO tunable laser (2 (mu) m to 4 (mu) m) in the infrared region. Much attention has been given to the requirements for high sensitivity and to sources of systematic error including stray light. Our laser calorimeter is capable of absolute electrical calibration. Preliminary results for the absorption coefficient of highly transparent potassium chloride (KCl) samples are reported.

  18. Development and operation of a high-throughput accurate-wavelength lens-based spectrometer

    SciTech Connect

    Bell, Ronald E.

    2014-11-15

    A high-throughput spectrometer for the 400–820 nm wavelength range has been developed for charge exchange recombination spectroscopy or general spectroscopy. A large 2160 mm{sup −1} grating is matched with fast f/1.8 200 mm lenses, which provide stigmatic imaging. A precision optical encoder measures the grating angle with an accuracy ≤0.075 arc sec. A high quantum efficiency low-etaloning CCD detector allows operation at longer wavelengths. A patch panel allows input fibers to interface with interchangeable fiber holders that attach to a kinematic mount at the entrance slit. Computer-controlled hardware allows automated control of wavelength, timing, f-number, automated data collection, and wavelength calibration.

  19. An experimental device for accurate ultrasounds measurements in liquid foods at high pressure

    NASA Astrophysics Data System (ADS)

    Hidalgo-Baltasar, E.; Taravillo, M.; Baonza, V. G.; Sanz, P. D.; Guignon, B.

    2012-12-01

    The use of high hydrostatic pressure to ensure safe and high-quality product has markedly increased in the food industry during the last decade. Ultrasonic sensors can be employed to control such processes in an equivalent way as they are currently used in processes carried out at room pressure. However, their installation, calibration and use are particularly challenging in the context of a high pressure environment. Besides, data about acoustic properties of food under pressure and even for water are quite scarce in the pressure range of interest for food treatment (namely, above 200 MPa). The objective of this work was to establish a methodology to determine the speed of sound in foods under pressure. An ultrasonic sensor using the multiple reflections method was adapted to a lab-scale HHP equipment to determine the speed of sound in water between 253.15 and 348.15 K, and at pressures up to 700 MPa. The experimental speed-of-sound data were compared to the data calculated from the equation of state of water (IAPWS-95 formulation). From this analysis, the way to calibrate cell path was validated. After this calibration procedure, the speed of sound could be determined in liquid foods by using this sensor with a relative uncertainty between (0.22 and 0.32) % at a confidence level of 95 % over the whole pressure domain.

  20. Accurate structure prediction of peptide–MHC complexes for identifying highly immunogenic antigens

    SciTech Connect

    Park, Min-Sun; Park, Sung Yong; Miller, Keith R.; Collins, Edward J.; Lee, Ha Youn

    2013-11-01

    Designing an optimal HIV-1 vaccine faces the challenge of identifying antigens that induce a broad immune capacity. One factor to control the breadth of T cell responses is the surface morphology of a peptide–MHC complex. Here, we present an in silico protocol for predicting peptide–MHC structure. A robust signature of a conformational transition was identified during all-atom molecular dynamics, which results in a model with high accuracy. A large test set was used in constructing our protocol and we went another step further using a blind test with a wild-type peptide and two highly immunogenic mutants, which predicted substantial conformational changes in both mutants. The center residues at position five of the analogs were configured to be accessible to solvent, forming a prominent surface, while the residue of the wild-type peptide was to point laterally toward the side of the binding cleft. We then experimentally determined the structures of the blind test set, using high resolution of X-ray crystallography, which verified predicted conformational changes. Our observation strongly supports a positive association of the surface morphology of a peptide–MHC complex to its immunogenicity. Our study offers the prospect of enhancing immunogenicity of vaccines by identifying MHC binding immunogens.

  1. Multichannel Thomson scattering systems with high spatial resolution (invited)

    SciTech Connect

    Johnson, D.; Bretz, N.; Dimock, D.; Grek, B.; Long, D.; Palladino, R.; Tolnas, E.

    1986-08-01

    Thomson scattering systems capable of providing snapshot profiles of electron temperature and density with high spatial resolution (>50 points) have become routine diagnostics on the Princeton large torus (PLT), Princeton divertor experiment (PDX), and tokamak fusion test reactor (TFTR) tokamaks. The design parameters of these systems are compared. Particular attention is given to describing those new components and techniques which have contributed most to improved data quality and reliability in the ten-year evolution of these systems. Examples of recent TFTR T-italic/sub e-italic/(R-italic) and n-italic/sub e-italic/(R-italic) profiles are presented.

  2. Multichannel Thomson scattering systems with high spatial resolution (invited)

    NASA Astrophysics Data System (ADS)

    Johnson, D.; Bretz, N.; Dimock, D.; Grek, B.; Long, D.; Palladino, R.; Tolnas, E.

    1986-08-01

    Thomson scattering systems capable of providing snapshot profiles of electron temperature and density with high spatial resolution (>50 points) have become routine diagnostics on the Princeton large torus (PLT), Princeton divertor experiment (PDX), and tokamak fusion test reactor (TFTR) tokamaks. The design parameters of these systems are compared. Particular attention is given to describing those new components and techniques which have contributed most to improved data quality and reliability in the ten-year evolution of these systems. Examples of recent TFTR Te(R) and ne(R) profiles are presented.

  3. Generation of remotely sensed reference data using low altitude, high spatial resolution hyperspectral imagery

    NASA Astrophysics Data System (ADS)

    Williams, McKay D.; van Aardt, Jan; Kerekes, John P.

    2016-05-01

    Exploitation of imaging spectroscopy (hyperspectral) data using classification and spectral unmixing algorithms is a major research area in remote sensing, with reference data required to assess algorithm performance. However, we are limited by our inability to generate rapid, accurate, and consistent reference data, thus making quantitative algorithm analysis difficult. As a result, many investigators present either limited quantitative results, use synthetic imagery, or provide qualitative results using real imagery. Existing reference data typically classify large swaths of imagery pixel-by-pixel, per cover type. While this type of mapping provides a first order understanding of scene composition, it is not detailed enough to include complexities such as mixed pixels, intra-end-member variability, and scene anomalies. The creation of more detailed ground reference data based on field work, on the other hand, is complicated by the spatial scale of common hyperspectral data sets. This research presents a solution to this challenge via classification of low altitude, high spatial resolution (1m GSD) National Ecological Observatory Network (NEON) hyperspectral imagery, on a pixel-by-pixel basis, to produce sub-pixel reference data for high altitude, lower spatial resolution (15m GSD) AVIRIS imagery. This classification is performed using traditional classification techniques, augmented by (0.3m GSD) NEON RGB data. This paper provides a methodology for generating large scale, sub-pixel reference data for AVIRIS imagery using NEON imagery. It also addresses challenges related to the fusion of multiple remote sensing modalities (e.g., different sensors, sensor look angles, spatial registration, varying scene illumination, etc.). A new algorithm for spatial registration of hyperspectral imagery with disparate resolutions is presented. Several versions of reference data results are compared to each other and to direct spectral unmixing of AVIRIS data. Initial results are

  4. Accurate screening for synthetic preservatives in beverage using high performance liquid chromatography with time-of-flight mass spectrometry.

    PubMed

    Li, Xiu Qin; Zhang, Feng; Sun, Yan Yan; Yong, Wei; Chu, Xiao Gang; Fang, Yan Yan; Zweigenbaum, Jerry

    2008-02-11

    In this study, liquid chromatography time-of-flight mass spectrometry (HPLC/TOF-MS) is applied to qualitation and quantitation of 18 synthetic preservatives in beverage. The identification by HPLC/TOF-MS is accomplished with the accurate mass (the subsequent generated empirical formula) of the protonated molecules [M+H]+ or the deprotonated molecules [M-H]-, along with the accurate mass of their main fragment ions. In order to obtain sufficient sensitivity for quantitation purposes (using the protonated or deprotonated molecule) and additional qualitative mass spectrum information provided by the fragments ions, segment program of fragmentor voltages is designed in positive and negative ion mode, respectively. Accurate mass measurements are highly useful in the complex sample analyses since they allow us to achieve a high degree of specificity, often needed when other interferents are present in the matrix. The mass accuracy typically obtained is routinely better than 3 ppm. The 18 compounds behave linearly in the 0.005-5.0mg.kg(-1) concentration range, with correlation coefficient >0.996. The recoveries at the tested concentrations of 1.0mg.kg(-1)-100mg.kg(-1) are 81-106%, with coefficients of variation <7.5%. Limits of detection (LODs) range from 0.0005 to 0.05 mg.kg(-1), which are far below the required maximum residue level (MRL) for these preservatives in foodstuff. The method is suitable for routine quantitative and qualitative analyses of synthetic preservatives in foodstuff.

  5. Photoacoustic lymphatic imaging with high spatial-temporal resolution

    NASA Astrophysics Data System (ADS)

    Martel, Catherine; Yao, Junjie; Huang, Chih-Hsien; Zou, Jun; Randolph, Gwendalyn J.; Wang, Lihong V.

    2014-11-01

    Despite its critical function in coordinating the egress of inflammatory and immune cells out of tissues and maintaining fluid balance, the causative role of lymphatic network dysfunction in pathological settings is still understudied. Engineered-animal models and better noninvasive high spatial-temporal resolution imaging techniques in both preclinical and clinical studies will help to improve our understanding of different lymphatic-related pathologic disorders. Our aim was to take advantage of our newly optimized noninvasive wide-field fast-scanning photoacoustic (PA) microcopy system to coordinately image the lymphatic vasculature and its flow dynamics, while maintaining high resolution and detection sensitivity. Here, by combining the optical-resolution PA microscopy with a fast-scanning water-immersible microelectromechanical system scanning mirror, we have imaged the lymph dynamics over a large field-of-view, with high spatial resolution and advanced detection sensitivity. Depending on the application, lymphatic vessels (LV) were spectrally or temporally differentiated from blood vessels. Validation experiments were performed on phantoms and in vivo to identify the LV. Lymphatic flow dynamics in nonpathological and pathological conditions were also visualized. These results indicate that our newly developed PA microscopy is a promising tool for lymphatic-related biological research.

  6. Photoacoustic lymphatic imaging with high spatial-temporal resolution.

    PubMed

    Martel, Catherine; Yao, Junjie; Huang, Chih-Hsien; Zou, Jun; Randolph, Gwendalyn J; Wang, Lihong V

    2014-11-01

    Despite its critical function in coordinating the egress of inflammatory and immune cells out of tissues and maintaining fluid balance, the causative role of lymphatic network dysfunction in pathological settings is still understudied. Engineered-animal models and better noninvasive high spatial-temporal resolution imaging techniques in both preclinical and clinical studies will help to improve our understanding of different lymphatic-related pathologic disorders. Our aim was to take advantage of our newly optimized noninvasive wide-field fast-scanning photoacoustic (PA) microcopy system to coordinately image the lymphatic vasculature and its flow dynamics, while maintaining high resolution and detection sensitivity. Here, by combining the optical-resolution PA microscopy with a fast-scanning water-immersible microelectromechanical system scanning mirror, we have imaged the lymph dynamics over a large field-of-view, with high spatial resolution and advanced detection sensitivity. Depending on the application, lymphatic vessels (LV) were spectrally or temporally differentiated from blood vessels. Validation experiments were performed on phantoms and in vivo to identify the LV. Lymphatic flow dynamics in nonpathological and pathological conditions were also visualized. These results indicate that our newly developed PA microscopy is a promising tool for lymphatic-related biological research.

  7. SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

    PubMed Central

    Pruesse, Elmar; Peplies, Jörg; Glöckner, Frank Oliver

    2012-01-01

    Motivation: In the analysis of homologous sequences, computation of multiple sequence alignments (MSAs) has become a bottleneck. This is especially troublesome for marker genes like the ribosomal RNA (rRNA) where already millions of sequences are publicly available and individual studies can easily produce hundreds of thousands of new sequences. Methods have been developed to cope with such numbers, but further improvements are needed to meet accuracy requirements. Results: In this study, we present the SILVA Incremental Aligner (SINA) used to align the rRNA gene databases provided by the SILVA ribosomal RNA project. SINA uses a combination of k-mer searching and partial order alignment (POA) to maintain very high alignment accuracy while satisfying high throughput performance demands. SINA was evaluated in comparison with the commonly used high throughput MSA programs PyNAST and mothur. The three BRAliBase III benchmark MSAs could be reproduced with 99.3, 97.6 and 96.1 accuracy. A larger benchmark MSA comprising 38 772 sequences could be reproduced with 98.9 and 99.3% accuracy using reference MSAs comprising 1000 and 5000 sequences. SINA was able to achieve higher accuracy than PyNAST and mothur in all performed benchmarks. Availability: Alignment of up to 500 sequences using the latest SILVA SSU/LSU Ref datasets as reference MSA is offered at http://www.arb-silva.de/aligner. This page also links to Linux binaries, user manual and tutorial. SINA is made available under a personal use license. Contact: epruesse@mpi-bremen.de Supplementary information: Supplementary data are available at Bioinformatics online. PMID:22556368

  8. Fast and accurate probability density estimation in large high dimensional astronomical datasets

    NASA Astrophysics Data System (ADS)

    Gupta, Pramod; Connolly, Andrew J.; Gardner, Jeffrey P.

    2015-01-01

    Astronomical surveys will generate measurements of hundreds of attributes (e.g. color, size, shape) on hundreds of millions of sources. Analyzing these large, high dimensional data sets will require efficient algorithms for data analysis. An example of this is probability density estimation that is at the heart of many classification problems such as the separation of stars and quasars based on their colors. Popular density estimation techniques use binning or kernel density estimation. Kernel density estimation has a small memory footprint but often requires large computational resources. Binning has small computational requirements but usually binning is implemented with multi-dimensional arrays which leads to memory requirements which scale exponentially with the number of dimensions. Hence both techniques do not scale well to large data sets in high dimensions. We present an alternative approach of binning implemented with hash tables (BASH tables). This approach uses the sparseness of data in the high dimensional space to ensure that the memory requirements are small. However hashing requires some extra computation so a priori it is not clear if the reduction in memory requirements will lead to increased computational requirements. Through an implementation of BASH tables in C++ we show that the additional computational requirements of hashing are negligible. Hence this approach has small memory and computational requirements. We apply our density estimation technique to photometric selection of quasars using non-parametric Bayesian classification and show that the accuracy of the classification is same as the accuracy of earlier approaches. Since the BASH table approach is one to three orders of magnitude faster than the earlier approaches it may be useful in various other applications of density estimation in astrostatistics.

  9. High-Order Accurate Solutions to the Helmholtz Equation in the Presence of Boundary Singularities

    NASA Astrophysics Data System (ADS)

    Britt, Darrell Steven, Jr.

    Problems of time-harmonic wave propagation arise in important fields of study such as geological surveying, radar detection/evasion, and aircraft design. These often involve highfrequency waves, which demand high-order methods to mitigate the dispersion error. We propose a high-order method for computing solutions to the variable-coefficient inhomogeneous Helmholtz equation in two dimensions on domains bounded by piecewise smooth curves of arbitrary shape with a finite number of boundary singularities at known locations. We utilize compact finite difference (FD) schemes on regular structured grids to achieve highorder accuracy due to their efficiency and simplicity, as well as the capability to approximate variable-coefficient differential operators. In this work, a 4th-order compact FD scheme for the variable-coefficient Helmholtz equation on a Cartesian grid in 2D is derived and tested. The well known limitation of finite differences is that they lose accuracy when the boundary curve does not coincide with the discretization grid, which is a severe restriction on the geometry of the computational domain. Therefore, the algorithm presented in this work combines high-order FD schemes with the method of difference potentials (DP), which retains the efficiency of FD while allowing for boundary shapes that are not aligned with the grid without sacrificing the accuracy of the FD scheme. Additionally, the theory of DP allows for the universal treatment of the boundary conditions. One of the significant contributions of this work is the development of an implementation that accommodates general boundary conditions (BCs). In particular, Robin BCs with discontinuous coefficients are studied, for which we introduce a piecewise parameterization of the boundary curve. Problems with discontinuities in the boundary data itself are also studied. We observe that the design convergence rate suffers whenever the solution loses regularity due to the boundary conditions. This is

  10. Accurate human microsatellite genotypes from high-throughput resequencing data using informed error profiles

    PubMed Central

    Highnam, Gareth; Franck, Christopher; Martin, Andy; Stephens, Calvin; Puthige, Ashwin; Mittelman, David

    2013-01-01

    Repetitive sequences are biologically and clinically important because they can influence traits and disease, but repeats are challenging to analyse using short-read sequencing technology. We present a tool for genotyping microsatellite repeats called RepeatSeq, which uses Bayesian model selection guided by an empirically derived error model that incorporates sequence and read properties. Next, we apply RepeatSeq to high-coverage genomes from the 1000 Genomes Project to evaluate performance and accuracy. The software uses common formats, such as VCF, for compatibility with existing genome analysis pipelines. Source code and binaries are available at http://github.com/adaptivegenome/repeatseq. PMID:23090981

  11. Rapid, high-order accurate calculation of flows due to free source or vortex distributions

    NASA Technical Reports Server (NTRS)

    Halsey, D.

    1981-01-01

    Fast Fourier transform (FFT) techniques are applied to the problem of finding the flow due to source or vortex distributions in the field outside an airfoil or other two-dimensional body. Either the complex potential or the complex velocity may be obtained to a high order of accuracy, with computational effort similar to that required by second-order fast Poisson solvers. These techniques are applicable to general flow problems with compressibility and rotation. An example is given of their use for inviscid compressible flow.

  12. a High-Accurate and Efficient Obrechkoff Five-Step Method for Undamped Duffing's Equation

    NASA Astrophysics Data System (ADS)

    Zhao, Deyin; Wang, Zhongcheng; Dai, Yongming; Wang, Yuan

    In this paper, we present a five-step Obrechkoff method to improve the previous two-step one for a second-order initial-value problem with the oscillatory solution. We use a special structure to construct the iterative formula, in which the higher-even-order derivatives are placed at central four nodes, and show there existence of periodic solutions in it with a remarkably wide interval of periodicity, H02 ˜ 16.28. By using a proper first-order derivative (FOD) formula to make this five-step method to have two advantages (a) a very high accuracy since the local truncation error (LTE) of both the main structure and the FOD formula are the same as O (h14); (b) a high efficiency because it avoids solving a polynomial equation with degree-nine by Picard iterative. By applying the new method to the well-known problem, the nonlinear Duffing's equation without damping, we can show that our numerical solution is four to five orders higher than the one by the previous Obrechkoff two-step method and it takes only 25% of CPU time required by the previous method to fulfil the same task. By using the new method, a better "exact" solution is found by fitting, whose error tolerance is below 5×10-15, than the one widely used in the lectures, whose error tolerance is below 10-11.

  13. The S-model: A highly accurate MOST model for CAD

    NASA Astrophysics Data System (ADS)

    Satter, J. H.

    1986-09-01

    A new MOST model which combines simplicity and a logical structure with a high accuracy of only 0.5-4.5% is presented. The model is suited for enhancement and depletion devices with either large or small dimensions. It includes the effects of scattering and carrier-velocity saturation as well as the influence of the intrinsic source and drain series resistance. The decrease of the drain current due to substrate bias is incorporated too. The model is in the first place intended for digital purposes. All necessary quantities are calculated in a straightforward manner without iteration. An almost entirely new way of determining the parameters is described and a new cluster parameter is introduced, which is responsible for the high accuracy of the model. The total number of parameters is 7. A still simpler β expression is derived, which is suitable for only one value of the substrate bias and contains only three parameters, while maintaining the accuracy. The way in which the parameters are determined is readily suited for automatic measurement. A simple linear regression procedure programmed in the computer, which controls the measurements, produces the parameter values.

  14. Internal Mammary Sentinel Lymph Node Biopsy With Modified Injection Technique: High Visualization Rate and Accurate Staging.

    PubMed

    Qiu, Peng-Fei; Cong, Bin-Bin; Zhao, Rong-Rong; Yang, Guo-Ren; Liu, Yan-Bing; Chen, Peng; Wang, Yong-Sheng

    2015-10-01

    Although the 2009 American Joint Committee on Cancer incorporated the internal mammary sentinel lymph node biopsy (IM-SLNB) concept, there has been little change in surgical practice patterns because of the low visualization rate of internal mammary sentinel lymph nodes (IMSLN) with the traditional radiotracer injection technique. In this study, various injection techniques were evaluated in term of the IMSLN visualization rate, and the impact of IM-SLNB on the diagnostic and prognostic value were analyzed.Clinically, axillary lymph nodes (ALN) negative patients (n = 407) were divided into group A (traditional peritumoral intraparenchymal injection) and group B (modified periareolar intraparenchymal injection). Group B was then separated into group B1 (low volume) and group B2 (high volume) according to the injection volume. Clinically, ALN-positive patients (n = 63) were managed as group B2. Internal mammary sentinel lymph node biopsy was performed for patients with IMSLN visualized.The IMSLN visualization rate was significantly higher in group B than that in group A (71.1% versus 15.5%, P < 0.001), whereas the axillary sentinel lymph nodes were reliably identified in both groups (98.9% versus 98.3%, P = 0.712). With high injection volume, group B2 was found to have higher IMSLN visualization rate than group B1 (75.1% versus 45.8%, P < 0.001). The IMSLN metastasis rate was only 8.1% (12/149) in clinically ALN-negative patients with successful IM-SLNB, and adjuvant treatment was altered in a small proportion. The IMSLN visualization rate was 69.8% (44/63) in clinically ALN-positive patients with the IMSLN metastasis rate up to 20.5% (9/44), and individual radiotherapy strategy could be guided with the IM-SLNB results.The modified injection technique (periareolar intraparenchymal, high volume, and ultrasound guidance) significantly improved the IMSLN visualization rate, making the routine IM-SLNB possible in daily practice. Internal mammary

  15. Internal Mammary Sentinel Lymph Node Biopsy With Modified Injection Technique: High Visualization Rate and Accurate Staging.

    PubMed

    Qiu, Peng-Fei; Cong, Bin-Bin; Zhao, Rong-Rong; Yang, Guo-Ren; Liu, Yan-Bing; Chen, Peng; Wang, Yong-Sheng

    2015-10-01

    Although the 2009 American Joint Committee on Cancer incorporated the internal mammary sentinel lymph node biopsy (IM-SLNB) concept, there has been little change in surgical practice patterns because of the low visualization rate of internal mammary sentinel lymph nodes (IMSLN) with the traditional radiotracer injection technique. In this study, various injection techniques were evaluated in term of the IMSLN visualization rate, and the impact of IM-SLNB on the diagnostic and prognostic value were analyzed.Clinically, axillary lymph nodes (ALN) negative patients (n = 407) were divided into group A (traditional peritumoral intraparenchymal injection) and group B (modified periareolar intraparenchymal injection). Group B was then separated into group B1 (low volume) and group B2 (high volume) according to the injection volume. Clinically, ALN-positive patients (n = 63) were managed as group B2. Internal mammary sentinel lymph node biopsy was performed for patients with IMSLN visualized.The IMSLN visualization rate was significantly higher in group B than that in group A (71.1% versus 15.5%, P < 0.001), whereas the axillary sentinel lymph nodes were reliably identified in both groups (98.9% versus 98.3%, P = 0.712). With high injection volume, group B2 was found to have higher IMSLN visualization rate than group B1 (75.1% versus 45.8%, P < 0.001). The IMSLN metastasis rate was only 8.1% (12/149) in clinically ALN-negative patients with successful IM-SLNB, and adjuvant treatment was altered in a small proportion. The IMSLN visualization rate was 69.8% (44/63) in clinically ALN-positive patients with the IMSLN metastasis rate up to 20.5% (9/44), and individual radiotherapy strategy could be guided with the IM-SLNB results.The modified injection technique (periareolar intraparenchymal, high volume, and ultrasound guidance) significantly improved the IMSLN visualization rate, making the routine IM-SLNB possible in daily practice. Internal mammary

  16. Highly accurate servo control of reference beam angle in holographic memory with polarized servo beam

    NASA Astrophysics Data System (ADS)

    Hosaka, Makoto; Ogata, Takeshi; Yamada, Kenichiro; Yamazaki, Kazuyoshi; Shimada, Kenichi

    2016-09-01

    We propose a new servo technique for controlling the reference beam angle in angular multiplexing holographic memory to attain higher capacity and higher speed data archiving. An orthogonally polarized beam with an incident angle slightly different from that of the reference beam is newly applied to the optics. The control signal for the servo is generated as the difference between the diffracted light intensities of these two beams from a hologram. The incident angle difference between the beams to the medium was optimized as sufficient properties of the control signal were obtained. The high accuracy of the control signal with an angle error lower than 1.5 mdeg was successfully confirmed in the simulations and experiments.

  17. Accurate sampling of PCDD/F in high temperature flue-gas using cooled sampling probes.

    PubMed

    Phan, Duong Ngoc Chau; Weidemann, Eva; Lundin, Lisa; Marklund, Stellan; Jansson, Stina

    2012-08-01

    In a laboratory-scale combustion reactor, flue-gas samples were collected at two temperatures in the post-combustion zone, 700°C and 400°C, using two different water-cooled sampling probes. The probes were the cooled probe described in the European Standard method EN-1948:1, referred to as the original probe, and a modified probe that contained a salt/ice mixture to assist the cooling, referred to as the sub-zero probe. To determine the efficiency of the cooling probes, internal temperature measurements were recorded at 5cm intervals inside the probes. Flue-gas samples were analyzed for polychlorinated dibenzo-p-dioxin and dibenzofurans (PCDD/Fs). Samples collected at 700°C using the original cooling probe showed higher concentrations of PCDD/Fs compared to samples collected using the sub-zero probe. No significant differences were observed between samples collected at 400°C. The results indicated that artifact formation of PCDD/Fs readily occurs during flue-gas sampling at high temperatures if the cooling within the probe is insufficient, as found for the original probe at 700°C. It was also shown that this problem could be alleviated by using probes with an enhanced cooling capacity, such as the sub-zero probe. Although this may not affect samples collected for regulatory purposes in exit gases, it is of great importance for research conducted in the high-temperature region of the post-combustion zone.

  18. High expression of CD26 accurately identifies human bacteria-reactive MR1-restricted MAIT cells

    PubMed Central

    Sharma, Prabhat K; Wong, Emily B; Napier, Ruth J; Bishai, William R; Ndung'u, Thumbi; Kasprowicz, Victoria O; Lewinsohn, Deborah A; Lewinsohn, David M; Gold, Marielle C

    2015-01-01

    Mucosa-associated invariant T (MAIT) cells express the semi-invariant T-cell receptor TRAV1–2 and detect a range of bacteria and fungi through the MHC-like molecule MR1. However, knowledge of the function and phenotype of bacteria-reactive MR1-restricted TRAV1–2+ MAIT cells from human blood is limited. We broadly characterized the function of MR1-restricted MAIT cells in response to bacteria-infected targets and defined a phenotypic panel to identify these cells in the circulation. We demonstrated that bacteria-reactive MR1-restricted T cells shared effector functions of cytolytic effector CD8+ T cells. By analysing an extensive panel of phenotypic markers, we determined that CD26 and CD161 were most strongly associated with these T cells. Using FACS to sort phenotypically defined CD8+ subsets we demonstrated that high expression of CD26 on CD8+ TRAV1–2+ cells identified with high specificity and sensitivity, bacteria-reactive MR1-restricted T cells from human blood. CD161hi was also specific for but lacked sensitivity in identifying all bacteria-reactive MR1-restricted T cells, some of which were CD161dim. Using cell surface expression of CD8, TRAV1–2, and CD26hi in the absence of stimulation we confirm that bacteria-reactive T cells are lacking in the blood of individuals with active tuberculosis and are restored in the blood of individuals undergoing treatment for tuberculosis. PMID:25752900

  19. Land cover mapping and change detection in urban watersheds using QuickBird high spatial resolution satellite imagery

    NASA Astrophysics Data System (ADS)

    Hester, David Barry

    The objective of this research was to develop methods for urban land cover analysis using QuickBird high spatial resolution satellite imagery. Such imagery has emerged as a rich commercially available remote sensing data source and has enjoyed high-profile broadcast news media and Internet applications, but methods of quantitative analysis have not been thoroughly explored. The research described here consists of three studies focused on the use of pan-sharpened 61-cm spatial resolution QuickBird imagery, the spatial resolution of which is the highest of any commercial satellite. In the first study, a per-pixel land cover classification method is developed for use with this imagery. This method utilizes a per-pixel classification approach to generate an accurate six-category high spatial resolution land cover map of a developing suburban area. The primary objective of the second study was to develop an accurate land cover change detection method for use with QuickBird land cover products. This work presents an efficient fuzzy framework for transforming map uncertainty into accurate and meaningful high spatial resolution land cover change analysis. The third study described here is an urban planning application of the high spatial resolution QuickBird-based land cover product developed in the first study. This work both meaningfully connects this exciting new data source to urban watershed management and makes an important empirical contribution to the study of suburban watersheds. Its analysis of residential roads and driveways as well as retail parking lots sheds valuable light on the impact of transportation-related land use on the suburban landscape. Broadly, these studies provide new methods for using state-of-the-art remote sensing data to inform land cover analysis and urban planning. These methods are widely adaptable and produce land cover products that are both meaningful and accurate. As additional high spatial resolution satellites are launched and the

  20. High-spatial resolution multispectral and panchromatic satellite imagery for mapping perennial desert plants

    NASA Astrophysics Data System (ADS)

    Alsharrah, Saad A.; Bruce, David A.; Bouabid, Rachid; Somenahalli, Sekhar; Corcoran, Paul A.

    2015-10-01

    The use of remote sensing techniques to extract vegetation cover information for the assessment and monitoring of land degradation in arid environments has gained increased interest in recent years. However, such a task can be challenging, especially for medium-spatial resolution satellite sensors, due to soil background effects and the distribution and structure of perennial desert vegetation. In this study, we utilised Pleiades high-spatial resolution, multispectral (2m) and panchromatic (0.5m) imagery and focused on mapping small shrubs and low-lying trees using three classification techniques: 1) vegetation indices (VI) threshold analysis, 2) pre-built object-oriented image analysis (OBIA), and 3) a developed vegetation shadow model (VSM). We evaluated the success of each approach using a root of the sum of the squares (RSS) metric, which incorporated field data as control and three error metrics relating to commission, omission, and percent cover. Results showed that optimum VI performers returned good vegetation cover estimates at certain thresholds, but failed to accurately map the distribution of the desert plants. Using the pre-built IMAGINE Objective OBIA approach, we improved the vegetation distribution mapping accuracy, but this came at the cost of over classification, similar to results of lowering VI thresholds. We further introduced the VSM which takes into account shadow for further refining vegetation cover classification derived from VI. The results showed significant improvements in vegetation cover and distribution accuracy compared to the other techniques. We argue that the VSM approach using high-spatial resolution imagery provides a more accurate representation of desert landscape vegetation and should be considered in assessments of desertification.

  1. Highly Accurate and Precise Infrared Transition Frequencies of the H_3^+ Cation

    NASA Astrophysics Data System (ADS)

    Perry, Adam J.; Markus, Charles R.; Hodges, James N.; Kocheril, G. Stephen; McCall, Benjamin J.

    2016-06-01

    Calculation of ab initio potential energy surfaces for molecules to high accuracy is only manageable for a handful of molecular systems. Among them is the simplest polyatomic molecule, the H_3^+ cation. In order to achieve a high degree of accuracy (<1 wn) corrections must be made to the to the traditional Born-Oppenheimer approximation that take into account not only adiabatic and non-adiabatic couplings, but quantum electrodynamic corrections as well. For the lowest rovibrational levels the agreement between theory and experiment is approaching 0.001 wn, whereas the agreement is on the order of 0.01 - 0.1 wn for higher levels which are closely rivaling the uncertainties on the experimental data. As method development for calculating these various corrections progresses it becomes necessary for the uncertainties on the experimental data to be improved in order to properly benchmark the calculations. Previously we have measured 20 rovibrational transitions of H_3^+ with MHz-level precision, all of which have arisen from low lying rotational levels. Here we present new measurements of rovibrational transitions arising from higher rotational and vibrational levels. These transitions not only allow for probing higher energies on the potential energy surface, but through the use of combination differences, will ultimately lead to prediction of the "forbidden" rotational transitions with MHz-level accuracy. L.G. Diniz, J.R. Mohallem, A. Alijah, M. Pavanello, L. Adamowicz, O.L. Polyansky, J. Tennyson Phys. Rev. A (2013), 88, 032506 O.L. Polyansky, A. Alijah, N.F. Zobov, I.I. Mizus, R.I. Ovsyannikov, J. Tennyson, L. Lodi, T. Szidarovszky, A.G. Császár Phil. Trans. R. Soc. A (2012), 370, 5014 J.N. Hodges, A.J. Perry, P.A. Jenkins II, B.M. Siller, B.J. McCall J. Chem. Phys. (2013), 139, 164201 A.J. Perry, J.N. Hodges, C.R. Markus, G.S. Kocheril, B.J. McCall J. Molec. Spectrosc. (2015), 317, 71-73.

  2. Spatial beam shaping for high-power frequency tripling lasers based on a liquid crystal spatial light modulator

    NASA Astrophysics Data System (ADS)

    Li, Sensen; Wang, Yulei; Lu, Zhiwei; Ding, Lei; Cui, Can; Chen, Yi; Pengyuan, Du; Ba, Dexin; Zheng, Zhenxing; Yuan, Hang; Shi, Lei; Bai, Zhenxu; Liu, Zhaohong; Zhu, Chengyu; Dong, Yongkang; Zhou, Luoxian

    2016-05-01

    We propose and demonstrate a spatial beam shaping method to achieve high-quality near-field for a high-power frequency tripling laser system by using a liquid crystal spatial light modulator (SLM). Considering the nonlinear relationship between the output 3ω intensity and the input 1ω intensity of the frequency conversion system and the transmittance nonuniformity of the whole laser system, we introduce an efficient spatial beam shaping method that improves the output near-field beam quality of frequency tripling laser dramatically. Results show that the near-field peak-to-mean value of the frequency tripling laser improves from 1.83:1 to 1.42:1 after spatial beam shaping within four shots. This method provides effective guidance for spatial beam shaping of high-power frequency tripling laser systems.

  3. Rapid and accurate developmental stage recognition of C. elegans from high-throughput image data.

    PubMed

    White, Amelia G; Cipriani, Patricia G; Kao, Huey-Ling; Lees, Brandon; Geiger, Davi; Sontag, Eduardo; Gunsalus, Kristin C; Piano, Fabio

    2010-08-01

    We present a hierarchical principle for object recognition and its application to automatically classify developmental stages of C. elegans animals from a population of mixed stages. The object recognition machine consists of four hierarchical layers, each composed of units upon which evaluation functions output a label score, followed by a grouping mechanism that resolves ambiguities in the score by imposing local consistency constraints. Each layer then outputs groups of units, from which the units of the next layer are derived. Using this hierarchical principle, the machine builds up successively more sophisticated representations of the objects to be classified. The algorithm segments large and small objects, decomposes objects into parts, extracts features from these parts, and classifies them by SVM. We are using this system to analyze phenotypic data from C. elegans high-throughput genetic screens, and our system overcomes a previous bottleneck in image analysis by achieving near real-time scoring of image data. The system is in current use in a functioning C. elegans laboratory and has processed over two hundred thousand images for lab users.

  4. HyRec: A Fast and Highly Accurate Primordial Hydrogen and Helium Recombination Code

    NASA Astrophysics Data System (ADS)

    Ali-Haïmoud, Yacine; Hirata, Christopher M.

    2010-11-01

    We present a state-of-the-art primordial recombination code, HyRec, including all the physical effects that have been shown to significantly affect recombination. The computation of helium recombination includes simple analytic treatments of hydrogen continuum opacity in the He I 2 1P - 1 1S line, the He I] 2 3P - 1 1S line, and treats feedback between these lines within the on-the-spot approximation. Hydrogen recombination is computed using the effective multilevel atom method, virtually accounting for an infinite number of excited states. We account for two-photon transitions from 2s and higher levels as well as frequency diffusion in Lyman-alpha with a full radiative transfer calculation. We present a new method to evolve the radiation field simultaneously with the level populations and the free electron fraction. These computations are sped up by taking advantage of the particular sparseness pattern of the equations describing the radiative transfer. The computation time for a full recombination history is ~2 seconds. This makes our code well suited for inclusion in Monte Carlo Markov chains for cosmological parameter estimation from upcoming high-precision cosmic microwave background anisotropy measurements.

  5. Transrectal high-intensity focused ultrasound ablation of prostate cancer: effective treatment requiring accurate imaging.

    PubMed

    Rouvière, Olivier; Souchon, Rémi; Salomir, Rarès; Gelet, Albert; Chapelon, Jean-Yves; Lyonnet, Denis

    2007-09-01

    Transrectal HIFU ablation has become a reasonable option for the treatment of localized prostate cancer in non-surgical patients, with 5-year disease-free survival similar to that of radiation therapy. It is also a promising salvage therapy of local recurrence after radiation therapy. These favourable results are partly due to recent improvements in prostate cancer imaging. However, further improvements are needed in patient selection, pre-operative localization of the tumor foci, assessment of the volume treated and early detection of recurrence. A better knowledge of the factors influencing the HIFU-induced tissue destruction and a better pre-operative assessment of them by imaging techniques should improve treatment outcome. Whereas prostate HIFU ablation is currently performed under transrectal ultrasound guidance, MR guidance with real-time operative monitoring of temperature will be available in the near future. If this technique will give better targeting and more uniform tissue destruction, its cost-effectiveness will have to be carefully evaluated. Finally, a recently reported synergistic effect between HIFU ablation and chemotherapy opens possibilities for treatment in high-risk or clinically advanced tumors.

  6. High Resolution Melting Analysis: A Rapid and Accurate Method to Detect CALR Mutations

    PubMed Central

    Moreno, Melania; Torres, Laura; Santana-Lopez, Gonzalo; Rodriguez-Medina, Carlos; Perera, María; Bellosillo, Beatriz; de la Iglesia, Silvia; Molero, Teresa; Gomez-Casares, Maria Teresa

    2014-01-01

    Background The recent discovery of CALR mutations in essential thrombocythemia (ET) and primary myelofibrosis (PMF) patients without JAK2/MPL mutations has emerged as a relevant finding for the molecular diagnosis of these myeloproliferative neoplasms (MPN). We tested the feasibility of high-resolution melting (HRM) as a screening method for rapid detection of CALR mutations. Methods CALR was studied in wild-type JAK2/MPL patients including 34 ET, 21 persistent thrombocytosis suggestive of MPN and 98 suspected secondary thrombocytosis. CALR mutation analysis was performed through HRM and Sanger sequencing. We compared clinical features of CALR-mutated versus 45 JAK2/MPL-mutated subjects in ET. Results Nineteen samples showed distinct HRM patterns from wild-type. Of them, 18 were mutations and one a polymorphism as confirmed by direct sequencing. CALR mutations were present in 44% of ET (15/34), 14% of persistent thrombocytosis suggestive of MPN (3/21) and none of the secondary thrombocytosis (0/98). Of the 18 mutants, 9 were 52 bp deletions, 8 were 5 bp insertions and other was a complex mutation with insertion/deletion. No mutations were found after sequencing analysis of 45 samples displaying wild-type HRM curves. HRM technique was reproducible, no false positive or negative were detected and the limit of detection was of 3%. Conclusions This study establishes a sensitive, reliable and rapid HRM method to screen for the presence of CALR mutations. PMID:25068507

  7. Accurate High-Temperature Reaction Networks for Alternative Fuels: Butanol Isomers

    SciTech Connect

    Van Geem, K. M.; Pyl, S. P.; Marin, G. B.; Harper, M. R.; Green, W. H.

    2010-11-03

    Oxygenated hydrocarbons, particularly alcohol compounds, are being studied extensively as alternatives and additives to conventional fuels due to their propensity of decreasing soot formation and improving the octane number of gasoline. However, oxygenated fuels also increase the production of toxic byproducts, such as formaldehyde. To gain a better understanding of the oxygenated functional group’s influence on combustion properties—e.g., ignition delay at temperatures above the negative temperature coefficient regime, and the rate of benzene production, which is the common precursor to soot formation—a detailed pressure-dependent reaction network for n-butanol, sec-butanol, and tert-butanol consisting of 281 species and 3608 reactions is presented. The reaction network is validated against shock tube ignition delays and doped methane flame concentration profiles reported previously in the literature, in addition to newly acquired pyrolysis data. Good agreement between simulated and experimental data is achieved in all cases. Flux and sensitivity analyses for each set of experiments have been performed, and high-pressure-limit reaction rate coefficients for important pathways, e.g., the dehydration reactions of the butanol isomers, have been computed using statistical mechanics and quantum chemistry. The different alcohol decomposition pathways, i.e., the pathways from primary, secondary, and tertiary alcohols, are discussed. Furthermore, comparisons between ethanol and n-butanol, two primary alcohols, are presented, as they relate to ignition delay.

  8. Cost-effective accurate coarse-grid method for highly convective multidimensional unsteady flows

    NASA Technical Reports Server (NTRS)

    Leonard, B. P.; Niknafs, H. S.

    1991-01-01

    A fundamentally multidimensional convection scheme is described based on vector transient interpolation modeling rewritten in conservative control-volume form. Vector third-order upwinding is used as the basis of the algorithm; this automatically introduces important cross-difference terms that are absent from schemes using component-wise one-dimensional formulas. Third-order phase accuracy is good; this is important for coarse-grid large-eddy or full simulation. Potential overshoots or undershoots are avoided by using a recently developed universal limiter. Higher order accuracy is obtained locally, where needed, by the cost-effective strategy of adaptive stencil expansion in a direction normal to each control-volume face; this is controlled by monitoring the absolute normal gradient and curvature across the face. Higher (than third) order cross-terms do not appear to be needed. Since the wider stencil is used only in isolated narrow regions (near discontinuities), extremely high (in this case, seventh) order accuracy can be achieved for little more than the cost of a globally third-order scheme.

  9. Spatial characterization of interictal high frequency oscillations in epileptic neocortex

    PubMed Central

    Trevelyan, A. J.; Schroeder, C. E.; Goodman, R. R.; McKhann, G.; Emerson, R. G.

    2009-01-01

    Interictal high frequency oscillations (HFOs), in particular those with frequency components in excess of 200 Hz, have been proposed as important biomarkers of epileptic cortex as well as the genesis of seizures. We investigated the spatial extent, classification and distribution of HFOs using a dense 4 × 4 mm2 two dimensional microelectrode array implanted in the neocortex of four patients undergoing epilepsy surgery. The majority (97%) of oscillations detected included fast ripples and were concentrated in relatively few recording sites. While most HFOs were limited to single channels, ∼10% occurred on a larger spatial scale with simultaneous but morphologically distinct detections in multiple channels. Eighty per cent of these large-scale events were associated with interictal epileptiform discharges. We propose that large-scale HFOs, rather than the more frequent highly focal events, are the substrates of the HFOs detected by clinical depth electrodes. This feature was prominent in three patients but rarely seen in only one patient recorded outside epileptogenic cortex. Additionally, we found that HFOs were commonly associated with widespread interictal epileptiform discharges but not with locally generated ‘microdischarges’. Our observations raise the possibility that, rather than being initiators of epileptiform activity, fast ripples may be markers of a secondary local response. PMID:19745024

  10. The development and verification of a highly accurate collision prediction model for automated noncoplanar plan delivery

    PubMed Central

    Yu, Victoria Y.; Tran, Angelia; Nguyen, Dan; Cao, Minsong; Ruan, Dan; Low, Daniel A.; Sheng, Ke

    2015-01-01

    Purpose: Significant dosimetric benefits had been previously demonstrated in highly noncoplanar treatment plans. In this study, the authors developed and verified an individualized collision model for the purpose of delivering highly noncoplanar radiotherapy and tested the feasibility of total delivery automation with Varian TrueBeam developer mode. Methods: A hand-held 3D scanner was used to capture the surfaces of an anthropomorphic phantom and a human subject, which were positioned with a computer-aided design model of a TrueBeam machine to create a detailed virtual geometrical collision model. The collision model included gantry, collimator, and couch motion degrees of freedom. The accuracy of the 3D scanner was validated by scanning a rigid cubical phantom with known dimensions. The collision model was then validated by generating 300 linear accelerator orientations corresponding to 300 gantry-to-couch and gantry-to-phantom distances, and comparing the corresponding distance measurements to their corresponding models. The linear accelerator orientations reflected uniformly sampled noncoplanar beam angles to the head, lung, and prostate. The distance discrepancies between measurements on the physical and virtual systems were used to estimate treatment-site-specific safety buffer distances with 0.1%, 0.01%, and 0.001% probability of collision between the gantry and couch or phantom. Plans containing 20 noncoplanar beams to the brain, lung, and prostate optimized via an in-house noncoplanar radiotherapy platform were converted into XML script for automated delivery and the entire delivery was recorded and timed to demonstrate the feasibility of automated delivery. Results: The 3D scanner measured the dimension of the 14 cm cubic phantom within 0.5 mm. The maximal absolute discrepancy between machine and model measurements for gantry-to-couch and gantry-to-phantom was 0.95 and 2.97 cm, respectively. The reduced accuracy of gantry-to-phantom measurements was

  11. The development and verification of a highly accurate collision prediction model for automated noncoplanar plan delivery

    SciTech Connect

    Yu, Victoria Y.; Tran, Angelia; Nguyen, Dan; Cao, Minsong; Ruan, Dan; Low, Daniel A.; Sheng, Ke

    2015-11-15

    Purpose: Significant dosimetric benefits had been previously demonstrated in highly noncoplanar treatment plans. In this study, the authors developed and verified an individualized collision model for the purpose of delivering highly noncoplanar radiotherapy and tested the feasibility of total delivery automation with Varian TrueBeam developer mode. Methods: A hand-held 3D scanner was used to capture the surfaces of an anthropomorphic phantom and a human subject, which were positioned with a computer-aided design model of a TrueBeam machine to create a detailed virtual geometrical collision model. The collision model included gantry, collimator, and couch motion degrees of freedom. The accuracy of the 3D scanner was validated by scanning a rigid cubical phantom with known dimensions. The collision model was then validated by generating 300 linear accelerator orientations corresponding to 300 gantry-to-couch and gantry-to-phantom distances, and comparing the corresponding distance measurements to their corresponding models. The linear accelerator orientations reflected uniformly sampled noncoplanar beam angles to the head, lung, and prostate. The distance discrepancies between measurements on the physical and virtual systems were used to estimate treatment-site-specific safety buffer distances with 0.1%, 0.01%, and 0.001% probability of collision between the gantry and couch or phantom. Plans containing 20 noncoplanar beams to the brain, lung, and prostate optimized via an in-house noncoplanar radiotherapy platform were converted into XML script for automated delivery and the entire delivery was recorded and timed to demonstrate the feasibility of automated delivery. Results: The 3D scanner measured the dimension of the 14 cm cubic phantom within 0.5 mm. The maximal absolute discrepancy between machine and model measurements for gantry-to-couch and gantry-to-phantom was 0.95 and 2.97 cm, respectively. The reduced accuracy of gantry-to-phantom measurements was

  12. Accurate glass forming for high-temperature solar applications. Final report

    SciTech Connect

    1980-10-01

    Development work was undertaken to thermally form glass for solar concentrators. Sagging and pressing glass to parabolic shapes was investigated with goal of achieving slope errors less than 2.0 mr RMS and costs of $1.25/ft/sup 2/. In addition, a laminating process was investigated to overcome the problem of silvering of a curved surface and to reduce corrosion of the silver. Thermal sagging is a process in which glass is shaped by heating the glass until it is sufficiently soft to deform under its own weight and conform to a mold. For cylindrical parabolic shapes, a method for producing low cost high accuracy molds was developed using castable ceramics and a grinder. Thermal conditions were established for a commercial glass bending furnace to obtain good replication of the mold. The accuracy and cost goals were met for glass size up to 30 x 30 x 0.125 inches and for low iron and regular iron float and sheet glasses. Lamination of two curved pieces of glass using automotive technology was investigated. A silver film was placed between two layers of polyvinyl and butyral (PVB) and this was used to bond two sheets of glass. Economically, and technically, the process appears feasible. However, the non-uniform thickness of PBV cause distortion in the reflected image. More work is needed to assess accuracy of curved laminated composites. Thermal pressing of glass is accomplished by heating the glass until it is soft and mechanically stamping the shape. Equipment was built and operated to determine important parameters in pressing. Control of thermal stresses in the glass is critical to preventing cracks. No glass pieces were produced without cracks.

  13. TROP-2 immunohistochemistry: a highly accurate method in the differential diagnosis of papillary thyroid carcinoma.

    PubMed

    Bychkov, Andrey; Sampatanukul, Pichet; Shuangshoti, Shanop; Keelawat, Somboon

    2016-08-01

    We aimed to evaluate the diagnostic utility of the novel immunohistochemical marker TROP-2 on thyroid specimens (226 tumours and 207 controls). Whole slide immunohistochemistry was performed and scored by automated digital image analysis. Non-neoplastic thyroid, follicular adenomas, follicular carcinomas, and medullary carcinomas were negative for TROP-2 immunostaining. The majority of papillary thyroid carcinoma (PTC) specimens (94/114, 82.5%) were positive for TROP-2; however, the pattern of staining differed significantly between the histopathological variants. All papillary microcarcinomas (mPTC), PTC classic variant (PTC cv), and tall cell variant (PTC tcv) were TROP-2 positive, with mainly diffuse staining. In contrast, less than half of the PTC follicular variant specimens were positive for TROP-2, with only focal immunoreactivity. TROP-2 could identify PTC cv with 98.1% sensitivity and 97.5% specificity. ROC curve analysis found that the presence of >10% of TROP-2 positive cells in a tumour supported a diagnosis of PTC. The study of intratumoural heterogeneity showed that low-volume cytological samples of PTC cv could be adequately assessed by TROP-2 immunostaining. The TROP-2 H-score (intensity multiplied by proportion) was significantly associated with PTC variant and capsular invasion in encapsulated PTC follicular variant (p<0.001). None of the baseline (age, gender) and clinical (tumour size, nodal disease, stage) parameters were correlated with TROP-2 expression. In conclusion, TROP-2 membranous staining is a very sensitive and specific marker for PTC cv, PTC tcv, and mPTC, with high overall specificity for PTC. PMID:27311870

  14. MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

    PubMed Central

    Tabb, David L.; Fernando, Christopher G.; Chambers, Matthew C.

    2008-01-01

    Shotgun proteomics experiments are dependent upon database search engines to identify peptides from tandem mass spectra. Many of these algorithms score potential identifications by evaluating the number of fragment ions matched between each peptide sequence and an observed spectrum. These systems, however, generally do not distinguish between matching an intense peak and matching a minor peak. We have developed a statistical model to score peptide matches that is based upon the multivariate hypergeometric distribution. This scorer, part of the “MyriMatch” database search engine, places greater emphasis on matching intense peaks. The probability that the best match for each spectrum has occurred by random chance can be employed to separate correct matches from random ones. We evaluated this software on data sets from three different laboratories employing three different ion trap instruments. Employing a novel system for testing discrimination, we demonstrate that stratifying peaks into multiple intensity classes improves the discrimination of scoring. We compare MyriMatch results to those of Sequest and X!Tandem, revealing that it is capable of higher discrimination than either of these algorithms. When minimal peak filtering is employed, performance plummets for a scoring model that does not stratify matched peaks by intensity. On the other hand, we find that MyriMatch discrimination improves as more peaks are retained in each spectrum. MyriMatch also scales well to tandem mass spectra from high-resolution mass analyzers. These findings may indicate limitations for existing database search scorers that count matched peaks without differentiating them by intensity. This software and source code is available under Mozilla Public License at this URL: http://www.mc.vanderbilt.edu/msrc/bioinformatics/. PMID:17269722

  15. Objective Delineation of River Bed Surface Patches from High-Resolution Spatial Grain Size Data

    NASA Astrophysics Data System (ADS)

    Nelson, P. A.; Bellugi, D.; Dietrich, W. E.

    2010-12-01

    Gravel-bed rivers commonly display distinct sorting patterns on their beds. Visually, this heterogeneity often appears to form an organization of distinct textural patches or facies. The local bed surface grain size, and therefore bed surface patchiness, exerts considerable influence on local bed mobility, bedload transport rates, hydrodynamic roughness, and benthic microhabitats. Despite the ecological and morphodynamic importance of bed surface patchiness, we lack accurate and objective methods to delineate bed patches. However, recent advances in photographic measurement of bed surface grain size distributions are capable of providing data at a spatial resolution high enough to allow us an opportunity to answer the question: what is a patch? Here, we explore a variety of techniques that can be applied to high-resolution spatial grain size data to automatically generate maps of grain size patches. We apply a state-of-the-art image processing and machine learning procedure to a photographic survey of the bed surface of a near-field scale flume to extract grain size data and to generate a spatial grid of bed surface grain size distributions. The flume bed was composed of gravel 2-45 mm in diameter and it featured clearly identifiable sorting features. Using this dataset, we investigate several possible methods of patch delineation. The grid of grain size distributions can be represented by a graph of nodes (grain size distributions) connected by edges whose weight is a function of the similarity between two nodes. Spectral graph theory is then used to optimally cut the edges in order to produce a spatial structure of patches that minimizes the association between patches and maximizes the association of nodes within a patch. In a different approach, agglomerative clustering of spatially adjacent grain size distributions is used to produce a hierarchical dendrogram that can be thresholded to partition the bed into patches. We also explore using the k-means algorithm

  16. A highly accurate absolute gravimetric network for Albania, Kosovo and Montenegro

    NASA Astrophysics Data System (ADS)

    Ullrich, Christian; Ruess, Diethard; Butta, Hubert; Qirko, Kristaq; Pavicevic, Bozidar; Murat, Meha

    2016-04-01

    The objective of this project is to establish a basic gravity network in Albania, Kosovo and Montenegro to enable further investigations in geodetic and geophysical issues. Therefore the first time in history absolute gravity measurements were performed in these countries. The Norwegian mapping authority Kartverket is assisting the national mapping authorities in Kosovo (KCA) (Kosovo Cadastral Agency - Agjencia Kadastrale e Kosovës), Albania (ASIG) (Autoriteti Shtetëror i Informacionit Gjeohapësinor) and in Montenegro (REA) (Real Estate Administration of Montenegro - Uprava za nekretnine Crne Gore) in improving the geodetic frameworks. The gravity measurements are funded by Kartverket. The absolute gravimetric measurements were performed from BEV (Federal Office of Metrology and Surveying) with the absolute gravimeter FG5-242. As a national metrology institute (NMI) the Metrology Service of the BEV maintains the national standards for the realisation of the legal units of measurement and ensures their international equivalence and recognition. Laser and clock of the absolute gravimeter were calibrated before and after the measurements. The absolute gravimetric survey was carried out from September to October 2015. Finally all 8 scheduled stations were successfully measured: there are three stations located in Montenegro, two stations in Kosovo and three stations in Albania. The stations are distributed over the countries to establish a gravity network for each country. The vertical gradients were measured at all 8 stations with the relative gravimeter Scintrex CG5. The high class quality of some absolute gravity stations can be used for gravity monitoring activities in future. The measurement uncertainties of the absolute gravity measurements range around 2.5 micro Gal at all stations (1 microgal = 10-8 m/s2). In Montenegro the large gravity difference of 200 MilliGal between station Zabljak and Podgorica can be even used for calibration of relative gravimeters

  17. Science with High Spatial Resolution Far-Infrared Data

    NASA Technical Reports Server (NTRS)

    Terebey, Susan (Editor); Mazzarella, Joseph M. (Editor)

    1994-01-01

    The goal of this workshop was to discuss new science and techniques relevant to high spatial resolution processing of far-infrared data, with particular focus on high resolution processing of IRAS data. Users of the maximum correlation method, maximum entropy, and other resolution enhancement algorithms applicable to far-infrared data gathered at the Infrared Processing and Analysis Center (IPAC) for two days in June 1993 to compare techniques and discuss new results. During a special session on the third day, interested astronomers were introduced to IRAS HIRES processing, which is IPAC's implementation of the maximum correlation method to the IRAS data. Topics discussed during the workshop included: (1) image reconstruction; (2) random noise; (3) imagery; (4) interacting galaxies; (5) spiral galaxies; (6) galactic dust and elliptical galaxies; (7) star formation in Seyfert galaxies; (8) wavelet analysis; and (9) supernova remnants.

  18. High spatial resolution infrared camera as ISS external experiment

    NASA Astrophysics Data System (ADS)

    Eckehard, Lorenz; Frerker, Hap; Fitch, Robert Alan

    High spatial resolution infrared camera as ISS external experiment for monitoring global climate changes uses ISS internal and external resources (eg. data storage). The optical experiment will consist of an infrared camera for monitoring global climate changes from the ISS. This technology was evaluated by the German small satellite mission BIRD and further developed in different ESA projects. Compared to BIRD the presended instrument uses proven sensor advanced technologies (ISS external) and ISS on board processing and storage capabili-ties (internal). The instrument will be equipped with a serial interfaces for TM/TC and several relay commands for the power supply. For data processing and storage a mass memory is re-quired. The access to actual attitude data is highly desired to produce geo referenced maps-if possible by an on board processing.

  19. Atmospheric Correction of High-Spatial-Resolution Commercial Satellite Imagery Products Using MODIS Atmospheric Products

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary; Holekamp, Kara; Ryan, Robert E.; Vaughan, Ronand; Russell, Jeff; Prados, Don; Stanley, Thomas

    2005-01-01

    Remotely sensed ground reflectance is the foundation of any interoperability or change detection technique. Satellite intercomparisons and accurate vegetation indices, such as the Normalized Difference Vegetation Index (NDVI), require the generation of accurate reflectance maps (NDVI is used to describe or infer a wide variety of biophysical parameters and is defined in terms of near-infrared (NIR) and red band reflectances). Accurate reflectance-map generation from satellite imagery relies on the removal of solar and satellite geometry and of atmospheric effects and is generally referred to as atmospheric correction. Atmospheric correction of remotely sensed imagery to ground reflectance has been widely applied to a few systems only. The ability to obtain atmospherically corrected imagery and products from various satellites is essential to enable widescale use of remotely sensed, multitemporal imagery for a variety of applications. An atmospheric correction approach derived from the Moderate Resolution Imaging Spectroradiometer (MODIS) that can be applied to high-spatial-resolution satellite imagery under many conditions was evaluated to demonstrate a reliable, effective reflectance map generation method. Additional information is included in the original extended abstract.

  20. Do high functioning persons with autism present superior spatial abilities?

    PubMed

    Caron, M-J; Mottron, L; Rainville, C; Chouinard, S

    2004-01-01

    This series of experiments was aimed at assessing spatial abilities in high functioning individuals with autism (HFA), using a human-size labyrinth. In the context of recent findings that the performance of individuals with HFA was superior to typically developing individuals in several non-social cognitive operations, it was expected that the HFA group would outperform a typically developing comparison group matched on full-scale IQ. Results showed that individuals with autism performed all spatial tasks at a level at least equivalent to the typically developing comparison group. No differences between groups were found in route and survey tasks. Superior performance for individuals with HFA was found in tasks involving maps, in the form of superior accuracy in graphic cued recall of a path, and shorter learning times in a map learning task. We propose that a superior ability to detect [Human Perception and Performance 27 (3) (2001) 719], match [Journal of Child Psychology and Psychiatry 34 (1993) 1351] and reproduce [Journal of Child Psychology and Psychiatry 40 (5) (1999) 743] simple visual elements yields superior performance in tasks relying on the detection and graphic reproduction of the visual elements composing a map. Enhanced discrimination, detection, and memory for visually simple patterns in autism may account for the superior performance of persons with autism on visuo-spatial tasks that heavily involve pattern recognition, either in the form of recognizing and memorizing landmarks or in detecting the similarity between map and landscape features. At a neuro-anatomical level, these findings suggest an intact dorso-lateral pathway, and enhanced performance in non social tasks relying on the infero-temporal pathway. PMID:14728920

  1. CONDENSED MATTER: STRUCTURE, MECHANICAL AND THERMAL PROPERTIES: An Accurate Image Simulation Method for High-Order Laue Zone Effects

    NASA Astrophysics Data System (ADS)

    Cai, Can-Ying; Zeng, Song-Jun; Liu, Hong-Rong; Yang, Qi-Bin

    2008-05-01

    A completely different formulation for simulation of the high order Laue zone (HOLZ) diffractions is derived. It refers to the new method, i.e. the Taylor series (TS) method. To check the validity and accuracy of the TS method, we take polyvinglidene fluoride (PVDF) crystal as an example to calculate the exit wavefunction by the conventional multi-slice (CMS) method and the TS method. The calculated results show that the TS method is much more accurate than the CMS method and is independent of the slice thicknesses. Moreover, the pure first order Laue zone wavefunction by the TS method can reflect the major potential distribution of the first reciprocal plane.

  2. Proceedings of the 2004 High Spatial Resolution Commercial Imagery Workshop

    NASA Technical Reports Server (NTRS)

    2006-01-01

    Topics covered include: NASA Applied Sciences Program; USGS Land Remote Sensing: Overview; QuickBird System Status and Product Overview; ORBIMAGE Overview; IKONOS 2004 Calibration and Validation Status; OrbView-3 Spatial Characterization; On-Orbit Modulation Transfer Function (MTF) Measurement of QuickBird; Spatial Resolution Characterization for QuickBird Image Products 2003-2004 Season; Image Quality Evaluation of QuickBird Super Resolution and Revisit of IKONOS: Civil and Commercial Application Project (CCAP); On-Orbit System MTF Measurement; QuickBird Post Launch Geopositional Characterization Update; OrbView-3 Geometric Calibration and Geopositional Accuracy; Geopositional Statistical Methods; QuickBird and OrbView-3 Geopositional Accuracy Assessment; Initial On-Orbit Spatial Resolution Characterization of OrbView-3 Panchromatic Images; Laboratory Measurement of Bidirectional Reflectance of Radiometric Tarps; Stennis Space Center Verification and Validation Capabilities; Joint Agency Commercial Imagery Evaluation (JACIE) Team; Adjacency Effects in High Resolution Imagery; Effect of Pulse Width vs. GSD on MTF Estimation; Camera and Sensor Calibration at the USGS; QuickBird Geometric Verification; Comparison of MODTRAN to Heritage-based Results in Vicarious Calibration at University of Arizona; Using Remotely Sensed Imagery to Determine Impervious Surface in Sioux Falls, South Dakota; Estimating Sub-Pixel Proportions of Sagebrush with a Regression Tree; How Do YOU Use the National Land Cover Dataset?; The National Map Hazards Data Distribution System; Recording a Troubled World; What Does This-Have to Do with This?; When Can a Picture Save a Thousand Homes?; InSAR Studies of Alaska Volcanoes; Earth Observing-1 (EO-1) Data Products; Improving Access to the USGS Aerial Film Collections: High Resolution Scanners; Improving Access to the USGS Aerial Film Collections: Phoenix Digitizing System Product Distribution; System and Product Characterization: Issues Approach

  3. Trace metal imaging with high spatial resolution: applications in biomedicine.

    PubMed

    Qin, Zhenyu; Caruso, Joseph A; Lai, Barry; Matusch, Andreas; Becker, J Sabine

    2011-01-01

    New generations of analytical techniques for imaging of metals are pushing hitherto boundaries of spatial resolution and quantitative analysis in biology. Because of this, the application of these imaging techniques described herein to the study of the organization and dynamics of metal cations and metal-containing biomolecules in biological cell and tissue is becoming an important issue in biomedical research. In the current review, three common metal imaging techniques in biomedical research are introduced, including synchrotron X-ray fluorescence (SXRF) microscopy, secondary ion mass spectrometry (SIMS), and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS). These are exemplified by a demonstration of the dopamine-Fe complexes, by assessment of boron distribution in a boron neutron capture therapy cell model, by mapping Cu and Zn in human brain cancer and a rat brain tumor model, and by the analysis of metal topography within neuromelanin. These studies have provided solid evidence that demonstrates that the sensitivity, spatial resolution, specificity, and quantification ability of metal imaging techniques is suitable and highly desirable for biomedical research. Moreover, these novel studies on the nanometre scale (e.g., of individual single cells or cell organelles) will lead to a better understanding of metal processes in cells and tissues.

  4. High Spatial Resolution Fe XII Observations of Solar Active Regions

    NASA Astrophysics Data System (ADS)

    Testa, Paola; De Pontieu, Bart; Hansteen, Viggo

    2016-08-01

    We use UV spectral observations of active regions with the Interface Region Imaging Spectrograph (IRIS) to investigate the properties of the coronal Fe xii 1349.4 Å emission at unprecedented high spatial resolution (˜0.33″). We find that by using appropriate observational strategies (i.e., long exposures, lossless compression), Fe xii emission can be studied with IRIS at high spatial and spectral resolution, at least for high-density plasma (e.g., post-flare loops and active region moss). We find that upper transition region (TR; moss) Fe xii emission shows very small average Doppler redshifts ({v}{{D}} ˜ 3 km s‑1) as well as modest non-thermal velocities (with an average of ˜24 km s‑1 and the peak of the distribution at ˜15 km s‑1). The observed distribution of Doppler shifts appears to be compatible with advanced three-dimensional radiative MHD simulations in which impulsive heating is concentrated at the TR footpoints of a hot corona. While the non-thermal broadening of Fe xii 1349.4 Å peaks at similar values as lower resolution simultaneous Hinode Extreme Ultraviolet Imaging Spectrometer (EIS) measurements of Fe xii 195 Å, IRIS observations show a previously undetected tail of increased non-thermal broadening that might be suggestive of the presence of subarcsecond heating events. We find that IRIS and EIS non-thermal line broadening measurements are affected by instrumental effects that can only be removed through careful analysis. Our results also reveal an unexplained discrepancy between observed 195.1/1349.4 Å Fe xii intensity ratios and those predicted by the CHIANTI atomic database.

  5. High Spatial Resolution Fe XII Observations of Solar Active Regions

    NASA Astrophysics Data System (ADS)

    Testa, Paola; De Pontieu, Bart; Hansteen, Viggo

    2016-08-01

    We use UV spectral observations of active regions with the Interface Region Imaging Spectrograph (IRIS) to investigate the properties of the coronal Fe xii 1349.4 Å emission at unprecedented high spatial resolution (˜0.33″). We find that by using appropriate observational strategies (i.e., long exposures, lossless compression), Fe xii emission can be studied with IRIS at high spatial and spectral resolution, at least for high-density plasma (e.g., post-flare loops and active region moss). We find that upper transition region (TR; moss) Fe xii emission shows very small average Doppler redshifts ({v}{{D}} ˜ 3 km s-1) as well as modest non-thermal velocities (with an average of ˜24 km s-1 and the peak of the distribution at ˜15 km s-1). The observed distribution of Doppler shifts appears to be compatible with advanced three-dimensional radiative MHD simulations in which impulsive heating is concentrated at the TR footpoints of a hot corona. While the non-thermal broadening of Fe xii 1349.4 Å peaks at similar values as lower resolution simultaneous Hinode Extreme Ultraviolet Imaging Spectrometer (EIS) measurements of Fe xii 195 Å, IRIS observations show a previously undetected tail of increased non-thermal broadening that might be suggestive of the presence of subarcsecond heating events. We find that IRIS and EIS non-thermal line broadening measurements are affected by instrumental effects that can only be removed through careful analysis. Our results also reveal an unexplained discrepancy between observed 195.1/1349.4 Å Fe xii intensity ratios and those predicted by the CHIANTI atomic database.

  6. Accurate and robust registration of high-speed railway viaduct point clouds using closing conditions and external geometric constraints

    NASA Astrophysics Data System (ADS)

    Ji, Zheng; Song, Mengxiao; Guan, Haiyan; Yu, Yongtao

    2015-08-01

    This paper proposes an automatic method for registering multiple laser scans without a control network. The proposed registration method first uses artificial targets to pair-wise register adjacent scans for initial transformation estimates; the proposed registration method then employs combined adjustments with closing conditions and external triangle constraints to globally register all scans along a long-range, high-speed railway corridor. The proposed registration method uses (1) closing conditions to eliminate registration errors that gradually accumulate as the length of a corridor (the number of scan stations) increases, and (2) external geometric constraints to ensure the shape correctness of an elongated high-speed railway. A 640-m high-speed railway viaduct with twenty-one piers is used to conduct experiments using our proposed registration method. A group of comparative experiments is undertaken to evaluate the robustness and efficiency of the proposed registration method to accurately register long-range corridors.

  7. Accurate calculation and assignment of highly excited vibrational levels of floppy triatomic molecules in a basis of adiabatic vibrational eigenstates

    NASA Astrophysics Data System (ADS)

    Bačić, Z.

    1991-09-01

    We show that the triatomic adiabatic vibrational eigenstates (AVES) provide a convenient basis for accurate discrete variable representation (DVR) calculation and automatic assignment of highly excited, large amplitude motion vibrational states of floppy triatomic molecules. The DVR-AVES states are eigenvectors of the diagonal (in the stretch states) blocks of the adiabatically rearranged triatomic DVR-ray eigenvector (DVR-REV) Hamiltonian [J. C. Light and Z. Bačić, J. Chem. Phys. 87, 4008 (1987)]. The transformation of the full triatomic vibrational Hamiltonian from the DVR-REV basis to the new DVR-AVES basis is simple, and does not involve calculation of any new matrix elements. No dynamical approximation is made in the energy level calculation by the DVR-AVES approach; its accuracy and efficiency are identical to those of the DVR-REV method. The DVR-AVES states, as the adiabatic approximation to the vibrational states of a triatomic molecule, are labeled by three vibrational quantum numbers. Consequently, accurate large amplitude motion vibrational levels obtained by diagonalizing the full vibrational Hamiltonian transformed to the DVR-AVES basis, can be assigned automatically by the code, with the three quantum numbers of the dominant DVR-AVES state associated with the largest (by modulus) eigenvector element in the DVR-AVES basis. The DVR-AVES approach is used to calculate accurate highly excited localized and delocalized vibrational levels of HCN/HNC and LiCN/LiNC. A significant fraction of localized states of both systems, below and above the isomerization barrier, is assigned automatically, without inspection of wave function plots or separate approximate calculations.

  8. Spatial Experiences of High Academic Achievers: Insights from a Developmental Perspective

    ERIC Educational Resources Information Center

    Weckbacher, Lisa Marie; Okamoto, Yukari

    2012-01-01

    The study explored the relationship between types of spatial experiences and spatial abilities among 13- to 14-year-old high academic achievers. Each participant completed two spatial tasks and a survey assessing favored spatial activities across five categories (computers, toys, sports, music, and art) and three developmental periods (early…

  9. Dynamic high-speed spatial manipulation of cold atoms using acousto-optic and spatial light modulation.

    PubMed

    Fatemi, F K; Bashkansky, M; Dutton, Z

    2007-03-19

    We demonstrate an experimental technique for high-resolution, high-speed spatial manipulation of atom clouds. By combining holographically engineered laser beams from a spatial light modulator with off-axis shear mode acousto-optic deflectors, we manipulate 1 x 3 arrays of cold atoms with individual site addressability. Additionally, we demonstrate smooth 2-dimensional motion of atomic ensembles, and the ability to guide multiple atomic ensembles independently.

  10. High spatial resolution soft-x-ray microscopy

    SciTech Connect

    Meyer-Ilse, W.; Medecki, H.; Brown, J.T.

    1997-04-01

    A new soft x-ray microscope (XM-1) with high spatial resolution has been constructed by the Center for X-ray Optics. It uses bending magnet radiation from beamline 6.1 at the Advanced Light Source, and is used in a variety of projects and applications in the life and physical sciences. Most of these projects are ongoing. The instrument uses zone plate lenses and achieves a resolution of 43 nm, measured over 10% to 90% intensity with a knife edge test sample. X-ray microscopy permits the imaging of relatively thick samples, up to 10 {mu}m thick, in water. XM-1 has an easy to use interface, that utilizes visible light microscopy to precisely position and focus the specimen. The authors describe applications of this device in the biological sciences, as well as in studying industrial applications including structured polymer samples.

  11. SHAPES - Spatial, high-accuracy, position-encoding sensor

    NASA Technical Reports Server (NTRS)

    Nerheim, Noble M.; Blue, Randel C.

    1992-01-01

    Future space systems will require control sensors capable of real-time measurements of position coordinates of many structural locations. Applications for such a sensor include figure and vibration control, rendezvous and docking, and structure assembly verification. The paper discusses an experimental study of SHAPES (spatial, high-accuracy, position-encoding sensor), a 3D position sensor that provides range and two angular positions of laser-illuminated retroreflector targets that mark the locations to be measured. Simultaneous range measurements to multiple targets by a time-of-flight corelation of short laser pulses are made with a CCD-equipped streak tube. Angular positions are measured with a CCD camera. Position measurements of 24 targets with sub-millimeter range accuracy at a 10 Hz update rate have been demonstrated.

  12. Challenges in building high performance geoscientific spatial data infrastructures

    NASA Astrophysics Data System (ADS)

    Dubros, Fabrice; Tellez-Arenas, Agnes; Boulahya, Faiza; Quique, Robin; Le Cozanne, Goneri; Aochi, Hideo

    2016-04-01

    One of the main challenges in Geosciences is to deal with both the huge amounts of data available nowadays and the increasing need for fast and accurate analysis. On one hand, computer aided decision support systems remain a major tool for quick assessment of natural hazards and disasters. High performance computing lies at the heart of such systems by providing the required processing capabilities for large three-dimensional time-dependent datasets. On the other hand, information from Earth observation systems at different scales is routinely collected to improve the reliability of numerical models. Therefore, various efforts have been devoted to design scalable architectures dedicated to the management of these data sets (Copernicus, EarthCube, EPOS). Indeed, standard data architectures suffer from a lack of control over data movement. This situation prevents the efficient exploitation of parallel computing architectures as the cost for data movement has become dominant. In this work, we introduce a scalable architecture that relies on high performance components. We discuss several issues such as three-dimensional data management, complex scientific workflows and the integration of high performance computing infrastructures. We illustrate the use of such architectures, mainly using off-the-shelf components, in the framework of both coastal flooding assessments and earthquake early warning systems.

  13. Spatial and Temporal Distribution of Initial 230TH/232TH in Sumatran Corals and its Influence on the Accurate Dating of Young Corals

    NASA Astrophysics Data System (ADS)

    Chiang, H.; Shen, C.; Meltzner, A. J.; Philibosian, B.; WU, C.; Sieh, K. E.; Wang, X.

    2012-12-01

    Accurate and precise determination of initial 230Th/232Th (230Th/232Th0) is important in dating young fossil corals, and it can significantly influence our understanding of paleoclimate, paleoceanographic and paleoseismic histories. A total of 47 unpublished and published isochrons (Shen et al., 2008; Meltzner et al., 2010, 2012; Philibosian et al., 2012), covering most of the Sumatran outer-arc islands, provide a more robust estimate of the 230Th/232Th0 variability in the region. The weighted average of 230Th/232Th0 atomic values is 4.7 (+5.5/-4.7) × 10-6 (2σ), consistent with the previously reported value of 6.5 ± 6.5 × 10-6 obtained from a handful of samples from the southern part of Sumatran outer-arc. Specifically, the calculated 230Th/232Th0 in the north and south are identical. The weighted mean of 3.5 (+7.0/-3.5) × 10-6 for fossil corals of 300-2000-yr old is slightly lower than the value of 5.4 ± 4.5 × 10-6 obtained from corals younger than 300 yrs B.P.. For corals containing less than 2 ppb of thorium, however, the age offset will be less than 10 yr by using different 230Th/232Th0, which is acceptable for most studies. We hereby recommend an updated 230Th/232Th0 value of 4.7 (+5.5/-4.7) × 10-6 for corals throughout the Sumatran outer-arc islands. For very high-precision age determination (<10 yr), coral samples with low Th concentration (< 2 ppb) are preferred.; ;

  14. Spatial and Temporal Data Fusion for Generating High-Resolution Land Cover Imagery

    NASA Astrophysics Data System (ADS)

    Xu, Yong

    Currently, remote sensing imagery has been widely used for generating global land cover products, but due to certain physical and budget limitations related to the sensors, their spatial and temporal resolution are too low to attain more accurate and more reliable global change research. In this situation, there is an urgent need to study and develop a more advanced satellite image processing method and land cover producing techniques to generate higher resolution images and land cover products for global change research. Through conducting a comprehensive study of the related theories and methods related to data fusion, various methods are systematically reviewed and summarized, such as HIS transformation image fusion, Wavelet transform image fusion, the Spatial and Temporal Adaptive Reflectance Fusion Model (STARFM), etc. The advantages and disadvantages of these methods are highlighted according to their specific applications in the field of remote sensing. Based on my research target, the following are the main contents of this thesis: (1) Data fusion theory will be systematically studied and summarized, including various fusion models and specific applications, such as IHS transformation, PCA transformation, Wavelet analysis based data fusion, etc. Furthermore, their advantages and disadvantages are pointed out in relation to specific applications. (2) As traditional data fusion methods rely on spatial information and it is hard to deal with multi-source data fusion with temporal variation, therefore, the traditional data fusion theory and methods will be improved by a consideration of temporal information. Accordingly, some spatial and temporal data fusion methods will be proposed, in which both high-resolution & low-temporary imagery and low-resolution & high-temporary imagery are incorporated. Our experiments also show that they are suitable for dealing with multi-temporal data integration and generating high-resolution, multi-temporal images for global

  15. Mitigating Uncertainty from Vegetation Spatial Complexity with Highly Portable Lidar

    NASA Astrophysics Data System (ADS)

    Paynter, I.; Schaaf, C.; Peri, F.; Saenz, E. J.; Genest, D.; Strahler, A. H.; Li, Z.

    2015-12-01

    To fully utilize the excellent spatial coverage and temporal resolution offered by satellite resources for estimating ecological variables, fine-scale observations are required for comparison, calibration and validation. Lidar instruments have proved effective in estimating the properties of vegetation components of ecosystems, but they are often challenged by occlusion, especially in structurally complex and spatially fragmented ecosystems such as tropical forests. Increasing the range of view angles, both horizontally and vertically, by increasing the number of scans, can mitigate occlusion. However these scans must occur within the window of temporal stability for the ecosystem and vegetation property being measured. The Compact Biomass Lidar (CBL) is a TLS optimized for portability and scanning speed, developed and operated by University of Massachusetts Boston. This 905nm wavelength scanner achieves an angular resolution of 0.25 degrees at a rate of 33 seconds per scan. The ability to acquire many scans within narrow windows of temporal stability for ecological variables has facilitated the more complete investigation of ecosystem structural characteristics, and their expression as a function of view angle. The lightweight CBL has facilitated the use of alternative deployment platforms including towers, trams and masts, allowing analysis of the vertical structure of ecosystems, even in highly enclosed environments such as the sub-canopy of tropical forests where aerial vehicles cannot currently operate. We will present results from view angle analyses of lidar surveys of tropical rainforest in La Selva, Costa Rica where the CBL was deployed at heights up to 10m in Carbono long-term research plots utilizing a portable mast, and on a 25m stationary tower; and temperate forest at Harvard Forest, Massachusetts, USA, where the CBL has been deployed biannually at long-term research plots of hardwood and hemlock, as well as at heights of up to 25m utilizing a

  16. Methods of photoelectrode characterization with high spatial and temporal resolution

    DOE PAGES

    Esposito, Daniel V.; Baxter, Jason B.; John, Jimmy; Lewis, Nathan S.; Moffat, Thomas P.; Ogitsu, Tadashi; O'Neil, Glen D.; Pham, Tuan Anh; Talin, A. Alec; Velazquez, Jesus M.; et al

    2015-06-19

    Here, materials and photoelectrode architectures that are highly efficient, extremely stable, and made from low cost materials are required for commercially viable photoelectrochemical (PEC) water-splitting technology. A key challenge is the heterogeneous nature of real-world materials, which often possess spatial variation in their crystal structure, morphology, and/or composition at the nano-, micro-, or macro-scale. Different structures and compositions can have vastly different properties and can therefore strongly influence the overall performance of the photoelectrode through complex structure–property relationships. A complete understanding of photoelectrode materials would also involve elucidation of processes such as carrier collection and electrochemical charge transfer that occurmore » at very fast time scales. We present herein an overview of a broad suite of experimental and computational tools that can be used to define the structure–property relationships of photoelectrode materials at small dimensions and on fast time scales. A major focus is on in situ scanning-probe measurement (SPM) techniques that possess the ability to measure differences in optical, electronic, catalytic, and physical properties with nano- or micro-scale spatial resolution. In situ ultrafast spectroscopic techniques, used to probe carrier dynamics involved with processes such as carrier generation, recombination, and interfacial charge transport, are also discussed. Complementing all of these experimental techniques are computational atomistic modeling tools, which can be invaluable for interpreting experimental results, aiding in materials discovery, and interrogating PEC processes at length and time scales not currently accessible by experiment. In addition to reviewing the basic capabilities of these experimental and computational techniques, we highlight key opportunities and limitations of applying these tools for the development of PEC materials.« less

  17. Methods of photoelectrode characterization with high spatial and temporal resolution

    SciTech Connect

    Esposito, Daniel V.; Baxter, Jason B.; John, Jimmy; Lewis, Nathan S.; Moffat, Thomas P.; Ogitsu, Tadashi; O'Neil, Glen D.; Pham, Tuan Anh; Talin, A. Alec; Velazquez, Jesus M.; Wood, Brandon C.

    2015-06-19

    Here, materials and photoelectrode architectures that are highly efficient, extremely stable, and made from low cost materials are required for commercially viable photoelectrochemical (PEC) water-splitting technology. A key challenge is the heterogeneous nature of real-world materials, which often possess spatial variation in their crystal structure, morphology, and/or composition at the nano-, micro-, or macro-scale. Different structures and compositions can have vastly different properties and can therefore strongly influence the overall performance of the photoelectrode through complex structure–property relationships. A complete understanding of photoelectrode materials would also involve elucidation of processes such as carrier collection and electrochemical charge transfer that occur at very fast time scales. We present herein an overview of a broad suite of experimental and computational tools that can be used to define the structure–property relationships of photoelectrode materials at small dimensions and on fast time scales. A major focus is on in situ scanning-probe measurement (SPM) techniques that possess the ability to measure differences in optical, electronic, catalytic, and physical properties with nano- or micro-scale spatial resolution. In situ ultrafast spectroscopic techniques, used to probe carrier dynamics involved with processes such as carrier generation, recombination, and interfacial charge transport, are also discussed. Complementing all of these experimental techniques are computational atomistic modeling tools, which can be invaluable for interpreting experimental results, aiding in materials discovery, and interrogating PEC processes at length and time scales not currently accessible by experiment. In addition to reviewing the basic capabilities of these experimental and computational techniques, we highlight key opportunities and limitations of applying these tools for the development of PEC materials.

  18. High Concentrations of Measles Neutralizing Antibodies and High-Avidity Measles IgG Accurately Identify Measles Reinfection Cases

    PubMed Central

    Rota, Jennifer S.; Hickman, Carole J.; Mercader, Sara; Redd, Susan; McNall, Rebecca J.; Williams, Nobia; McGrew, Marcia; Walls, M. Laura; Rota, Paul A.; Bellini, William J.

    2016-01-01

    In the United States, approximately 9% of the measles cases reported from 2012 to 2014 occurred in vaccinated individuals. Laboratory confirmation of measles in vaccinated individuals is challenging since IgM assays can give inconclusive results. Although a positive reverse transcription (RT)-PCR assay result from an appropriately timed specimen can provide confirmation, negative results may not rule out a highly suspicious case. Detection of high-avidity measles IgG in serum samples provides laboratory evidence of a past immunologic response to measles from natural infection or immunization. High concentrations of measles neutralizing antibody have been observed by plaque reduction neutralization (PRN) assays among confirmed measles cases with high-avidity IgG, referred to here as reinfection cases (RICs). In this study, we evaluated the utility of measuring levels of measles neutralizing antibody to distinguish RICs from noncases by receiver operating characteristic curve analysis. Single and paired serum samples with high-avidity measles IgG from suspected measles cases submitted to the CDC for routine surveillance were used for the analysis. The RICs were confirmed by a 4-fold rise in PRN titer or by RT-quantitative PCR (RT-qPCR) assay, while the noncases were negative by both assays. Discrimination accuracy was high with serum samples collected ≥3 days after rash onset (area under the curve, 0.953; 95% confidence interval [CI], 0.854 to 0.993). Measles neutralizing antibody concentrations of ≥40,000 mIU/ml identified RICs with 90% sensitivity (95% CI, 74 to 98%) and 100% specificity (95% CI, 82 to 100%). Therefore, when serological or RT-qPCR results are unavailable or inconclusive, suspected measles cases with high-avidity measles IgG can be confirmed as RICs by measles neutralizing antibody concentrations of ≥40,000 mIU/ml. PMID:27335386

  19. High Concentrations of Measles Neutralizing Antibodies and High-Avidity Measles IgG Accurately Identify Measles Reinfection Cases.

    PubMed

    Sowers, Sun B; Rota, Jennifer S; Hickman, Carole J; Mercader, Sara; Redd, Susan; McNall, Rebecca J; Williams, Nobia; McGrew, Marcia; Walls, M Laura; Rota, Paul A; Bellini, William J

    2016-08-01

    In the United States, approximately 9% of the measles cases reported from 2012 to 2014 occurred in vaccinated individuals. Laboratory confirmation of measles in vaccinated individuals is challenging since IgM assays can give inconclusive results. Although a positive reverse transcription (RT)-PCR assay result from an appropriately timed specimen can provide confirmation, negative results may not rule out a highly suspicious case. Detection of high-avidity measles IgG in serum samples provides laboratory evidence of a past immunologic response to measles from natural infection or immunization. High concentrations of measles neutralizing antibody have been observed by plaque reduction neutralization (PRN) assays among confirmed measles cases with high-avidity IgG, referred to here as reinfection cases (RICs). In this study, we evaluated the utility of measuring levels of measles neutralizing antibody to distinguish RICs from noncases by receiver operating characteristic curve analysis. Single and paired serum samples with high-avidity measles IgG from suspected measles cases submitted to the CDC for routine surveillance were used for the analysis. The RICs were confirmed by a 4-fold rise in PRN titer or by RT-quantitative PCR (RT-qPCR) assay, while the noncases were negative by both assays. Discrimination accuracy was high with serum samples collected ≥3 days after rash onset (area under the curve, 0.953; 95% confidence interval [CI], 0.854 to 0.993). Measles neutralizing antibody concentrations of ≥40,000 mIU/ml identified RICs with 90% sensitivity (95% CI, 74 to 98%) and 100% specificity (95% CI, 82 to 100%). Therefore, when serological or RT-qPCR results are unavailable or inconclusive, suspected measles cases with high-avidity measles IgG can be confirmed as RICs by measles neutralizing antibody concentrations of ≥40,000 mIU/ml. PMID:27335386

  20. Accurate measurement of dispersion data through short and narrow tubes used in very high-pressure liquid chromatography.

    PubMed

    Gritti, Fabrice; McDonald, Thomas; Gilar, Martin

    2015-09-01

    An original method is proposed for the accurate and reproducible measurement of the time-based dispersion properties of short L< 50cm and narrow rc< 50μm tubes at mobile phase flow rates typically used in very high-pressure liquid chromatography (vHPLC). Such tubes are used to minimize sample dispersion in vHPLC; however, their dispersion characteristics cannot be accurately measured at such flow rates due to system dispersion contribution of vHPLC injector and detector. It is shown that using longer and wider tubes (>10μL) enables a reliable measurement of the dispersion data. We confirmed that the dimensionless plot of the reduced dispersion coefficient versus the reduced linear velocity (Peclet number) depends on the aspect ratio, L/rc, of the tube, and unexpectedly also on the diffusion coefficient of the analyte. This dimensionless plot could be easily obtained for a large volume tube, which has the same aspect ratio as that of the short and narrow tube, and for the same diffusion coefficient. The dispersion data for the small volume tube are then directly extrapolated from this plot. For instance, it is found that the maximum volume variances of 75μm×30.5cm and 100μm×30.5cm prototype finger-tightened connecting tubes are 0.10 and 0.30μL(2), respectively, with an accuracy of a few percent and a precision smaller than seven percent.

  1. Development of New Accurate, High Resolution DEMs and Merged Topographic-Bathymetric Grids for Inundation Mapping in Seward Alaska

    NASA Astrophysics Data System (ADS)

    Marriott, D.; Suleimani, E.; Hansen, R.

    2004-05-01

    The Geophysical Institute of the University of Alaska Fairbanks and the Alaska Division of Geological and Geophysical Surveys continue to participate in the National Tsunami Hazard Mitigation Program by evaluating and mapping potential inundation of selected coastal communities in Alaska. Seward, the next Alaskan community to be mapped, has excellent bathymetric data but very poor topographic data available. Since one of the most significant sources of errors in tsunami inundation mapping is inaccuracy of topographic and bathymetric data, the Alaska Tsunami Modeling Team cooperated with the local USGS glaciology office to perform photogrammetry in the Seward area to produce a new DEM. Using ten air photos and the APEX photogrammetry and analysis software, along with several precisely located GPS points, we developed a new georeferenced and highly accurate DEM with a 5-meter grid spacing. A variety of techniques were used to remove the effects of buildings and trees to yield a bald earth model. Finally, we resampled the new DEM to match the finest resolution model grid, and combined it with all other data, using the most recent and accurate data in each region. The new dataset has contours that deviate by more than 100 meters in some places from the contours in the previous dataset, showing significant improvement in accuracy for the purpose of tsunami modeling.

  2. Multi-stencils fast marching methods: a highly accurate solution to the eikonal equation on cartesian domains.

    PubMed

    Hassouna, M Sabry; Farag, A A

    2007-09-01

    A wide range of computer vision applications require an accurate solution of a particular Hamilton- Jacobi (HJ) equation, known as the Eikonal equation. In this paper, we propose an improved version of the fast marching method (FMM) that is highly accurate for both 2D and 3D Cartesian domains. The new method is called multi-stencils fast marching (MSFM), which computes the solution at each grid point by solving the Eikonal equation along several stencils and then picks the solution that satisfies the upwind condition. The stencils are centered at each grid point and cover its entire nearest neighbors. In 2D space, 2 stencils cover the 8-neighbors of the point, while in 3D space, 6 stencils cover its 26-neighbors. For those stencils that are not aligned with the natural coordinate system, the Eikonal equation is derived using directional derivatives and then solved using higher order finite difference schemes. The accuracy of the proposed method over the state-of-the-art FMM-based techniques has been demonstrated through comprehensive numerical experiments.

  3. Highly accurate quantification of hydroxyproline-containing peptides in blood using a protease digest of stable isotope-labeled collagen.

    PubMed

    Taga, Yuki; Kusubata, Masashi; Ogawa-Goto, Kiyoko; Hattori, Shunji

    2014-12-17

    Collagen-derived hydroxyproline (Hyp)-containing dipeptides and tripeptides, which are known to possess physiological functions, appear in blood at high concentrations after oral ingestion of gelatin hydrolysate. However, highly accurate and sensitive quantification of the Hyp-containing peptides in blood has been challenging because of the analytical interference from numerous other blood components. We recently developed a stable isotope-labeled collagen named "SI-collagen" that can be used as an internal standard in various types of collagen analyses employing liquid chromatography-mass spectrometry (LC-MS). Here we prepared stable isotope-labeled Hyp-containing peptides from SI-collagen using trypsin/chymotrypsin and plasma proteases by mimicking the protein degradation pathways in the body. With the protease digest of SI-collagen used as an internal standard mixture, we achieved highly accurate simultaneous quantification of Hyp and 13 Hyp-containing peptides in human blood by LC-MS. The area under the plasma concentration-time curve of Hyp-containing peptides ranged from 0.663 ± 0.022 nmol/mL·h for Pro-Hyp-Gly to 163 ± 1 nmol/mL·h for Pro-Hyp after oral ingestion of 25 g of fish gelatin hydrolysate, and the coefficient of variation of three separate measurements was <7% for each peptide except for Glu-Hyp-Gly, which was near the detection limit. Our method is useful for absorption/metabolism studies of the Hyp-containing peptides and development of functionally characterized gelatin hydrolysate.

  4. Accurate High-Resolution Measurements of 3-D Tissue Dynamics With Registration-Enhanced Displacement Encoded MRI

    PubMed Central

    Merchant, Samer S.; Hsu, Edward W.

    2014-01-01

    Displacement fields are important to analyze deformation, which is associated with functional and material tissue properties often used as indicators of health. Magnetic resonance imaging (MRI) techniques like DENSE and image registration methods like Hyperelastic Warping have been used to produce pixel-level deformation fields that are desirable in high-resolution analysis. However, DENSE can be complicated by challenges associated with image phase unwrapping, in particular offset determination. On the other hand, Hyperelastic Warping can be hampered by low local image contrast. The current work proposes a novel approach for measuring tissue displacement with both DENSE and Hyperelastic Warping, incorporating physically accurate displacements obtained by the latter to improve phase characterization in DENSE. The validity of the proposed technique is demonstrated using numerical and physical phantoms, and in vivo small animal cardiac MRI. PMID:24771572

  5. A simple, efficient, and high-order accurate curved sliding-mesh interface approach to spectral difference method on coupled rotating and stationary domains

    NASA Astrophysics Data System (ADS)

    Zhang, Bin; Liang, Chunlei

    2015-08-01

    This paper presents a simple, efficient, and high-order accurate sliding-mesh interface approach to the spectral difference (SD) method. We demonstrate the approach by solving the two-dimensional compressible Navier-Stokes equations on quadrilateral grids. This approach is an extension of the straight mortar method originally designed for stationary domains [7,8]. Our sliding method creates curved dynamic mortars on sliding-mesh interfaces to couple rotating and stationary domains. On the nonconforming sliding-mesh interfaces, the related variables are first projected from cell faces to mortars to compute common fluxes, and then the common fluxes are projected back from the mortars to the cell faces to ensure conservation. To verify the spatial order of accuracy of the sliding-mesh spectral difference (SSD) method, both inviscid and viscous flow cases are tested. It is shown that the SSD method preserves the high-order accuracy of the SD method. Meanwhile, the SSD method is found to be very efficient in terms of computational cost. This novel sliding-mesh interface method is very suitable for parallel processing with domain decomposition. It can be applied to a wide range of problems, such as the hydrodynamics of marine propellers, the aerodynamics of rotorcraft, wind turbines, and oscillating wing power generators, etc.

  6. Stable, high-order SBP-SAT finite difference operators to enable accurate simulation of compressible turbulent flows on curvilinear grids, with application to predicting turbulent jet noise

    NASA Astrophysics Data System (ADS)

    Byun, Jaeseung; Bodony, Daniel; Pantano, Carlos

    2014-11-01

    Improved order-of-accuracy discretizations often require careful consideration of their numerical stability. We report on new high-order finite difference schemes using Summation-By-Parts (SBP) operators along with the Simultaneous-Approximation-Terms (SAT) boundary condition treatment for first and second-order spatial derivatives with variable coefficients. In particular, we present a highly accurate operator for SBP-SAT-based approximations of second-order derivatives with variable coefficients for Dirichlet and Neumann boundary conditions. These terms are responsible for approximating the physical dissipation of kinetic and thermal energy in a simulation, and contain grid metrics when the grid is curvilinear. Analysis using the Laplace transform method shows that strong stability is ensured with Dirichlet boundary conditions while weaker stability is obtained for Neumann boundary conditions. Furthermore, the benefits of the scheme is shown in the direct numerical simulation (DNS) of a Mach 1.5 compressible turbulent supersonic jet using curvilinear grids and skew-symmetric discretization. Particularly, we show that the improved methods allow minimization of the numerical filter often employed in these simulations and we discuss the qualities of the simulation.

  7. Accurate Transmittance Measurements of Thick, High-Index, High- Dispersion, IR Windows, Using a Fourier Transform IR Spectrometer

    NASA Astrophysics Data System (ADS)

    Kupferberg, Lenn C.

    1996-03-01

    Fourier transform IR [FT-IR] spectrometers have virtually replaced scanned grating IR spectrometers in the commercial market. While FTIR spectrometers have been a boon for the chemist, they present problems for the measurement of transmittance of thick, high-index, high-dispersion, IR windows. Reflection and refraction of light by the windows introduce measurement errors. The principles of the FT-IR spectrometer will be briefly reviewed. The origins of the measurement errors will be discussed. Simple modifications to the operation of commercially available instruments will be presented. These include using strategically placed apertures and the use of collimated vs. focused beams at the sample position. They are essential for removing the effects of reflected light entering the interferometer and limiting the divergence angle of light in the interferometer. The latter minimizes refractive effects and insures consistent underfilling of the detector. Data will be shown from FT-IR spectrometers made by four manufactures and compared to measurements from a dispersive spectrometer.

  8. The importance of suppressing spin diffusion effects in the accurate determination of the spatial structure of a flexible molecule by nuclear Overhauser effect spectroscopy

    NASA Astrophysics Data System (ADS)

    Khodov, I. A.; Efimov, S. V.; Klochkov, V. V.; Batista de Carvalho, L. A. E.; Kiselev, M. G.

    2016-02-01

    Two-dimensional nuclear Overhauser effect spectroscopy is applied to the elucidation of conformation distribution of small molecules in solution. An essential influence of the nonlinear multistep magnetization transfer (spin diffusion) on the NMR-based analysis of conformers distribution for small druglike molecules in solution was revealed. Therefore, the spin diffusion should be eliminated from the obtained NMR data in order to obtain accurate results. Efficiency of QUIET-NOESY spectroscopy in solving the problem of accurate determination of inter-proton distances in a small molecule was shown in a study of ibuprofen. Although it requires much experimental time, this technique was found to be helpful to solve the spin diffusion problem.

  9. Monte Carlo code for high spatial resolution ocean color simulations.

    PubMed

    D'Alimonte, Davide; Zibordi, Giuseppe; Kajiyama, Tamito; Cunha, José C

    2010-09-10

    A Monte Carlo code for ocean color simulations has been developed to model in-water radiometric fields of downward and upward irradiance (E(d) and E(u)), and upwelling radiance (L(u)) in a two-dimensional domain with a high spatial resolution. The efficiency of the code has been optimized by applying state-of-the-art computing solutions, while the accuracy of simulation results has been quantified through benchmark with the widely used Hydrolight code for various values of seawater inherent optical properties and different illumination conditions. Considering a seawater single scattering albedo of 0.9, as well as surface waves of 5 m width and 0.5 m height, the study has shown that the number of photons required to quantify uncertainties induced by wave focusing effects on E(d), E(u), and L(u) data products is of the order of 10(6), 10(9), and 10(10), respectively. On this basis, the effects of sea-surface geometries on radiometric quantities have been investigated for different surface gravity waves. Data products from simulated radiometric profiles have finally been analyzed as a function of the deployment speed and sampling frequency of current free-fall systems in view of providing recommendations to improve measurement protocols.

  10. Monte Carlo code for high spatial resolution ocean color simulations.

    PubMed

    D'Alimonte, Davide; Zibordi, Giuseppe; Kajiyama, Tamito; Cunha, José C

    2010-09-10

    A Monte Carlo code for ocean color simulations has been developed to model in-water radiometric fields of downward and upward irradiance (E(d) and E(u)), and upwelling radiance (L(u)) in a two-dimensional domain with a high spatial resolution. The efficiency of the code has been optimized by applying state-of-the-art computing solutions, while the accuracy of simulation results has been quantified through benchmark with the widely used Hydrolight code for various values of seawater inherent optical properties and different illumination conditions. Considering a seawater single scattering albedo of 0.9, as well as surface waves of 5 m width and 0.5 m height, the study has shown that the number of photons required to quantify uncertainties induced by wave focusing effects on E(d), E(u), and L(u) data products is of the order of 10(6), 10(9), and 10(10), respectively. On this basis, the effects of sea-surface geometries on radiometric quantities have been investigated for different surface gravity waves. Data products from simulated radiometric profiles have finally been analyzed as a function of the deployment speed and sampling frequency of current free-fall systems in view of providing recommendations to improve measurement protocols. PMID:20830183

  11. High spatial resolution spectrometry of rafting macroalgae (Sargassum)

    NASA Astrophysics Data System (ADS)

    Szekielda, Karl H.; Marmorino, George O.; Bowles, Jeffrey H.; Gillis, David

    2010-04-01

    Data with 0.4-m spatial resolution acquired ~2 km off the southeast Florida coast using the airborne Portable Hyperspectral Imager for Low-Light Spectroscopy (PHILLS) have been analyzed with the objective of identifying drifting surface macroalgae (Sargassum) through its spectral signature in at-sensor radiance. The observed spectral features of Sargassum include a peak at a wavelength of ~0.570 μm and a photosynthetic 'red edge' between 0.673 and 0.699 μm. Sargassum also exhibits high radiance in the reflected near-infrared but is impacted by the atmospheric absorption bands of water vapor at 0.720 μm and oxygen at 0.756 μm. The spectral signature is clearest and largest in amplitude where the Sargassum occurs as small surface aggregations, or rafts, which tend to lie at the downwind ends of narrow Sargassum windrows. The quantity of floating Sargassum was estimated within a single pixel by linearly mixing a spectrum of Sargassum-free water with varying percentages of a spectrum from a pixel assumed completely filled with floating plants. For our study site about 2.3% of the ocean area is classified as having some Sargassum coverage, with pixels completely filled with Sargassum being rare (only 0.2% of the classified Sargassum pixels) and pixels with the least-resolvable amount of Sargassum (~10% filled) being the most common.

  12. Highly Accurate Quartic Force Fields, Vibrational Frequencies, and Spectroscopic Constants for Cyclic and Linear C3H3(+)

    NASA Technical Reports Server (NTRS)

    Huang, Xinchuan; Taylor, Peter R.; Lee, Timothy J.

    2011-01-01

    High levels of theory have been used to compute quartic force fields (QFFs) for the cyclic and linear forms of the C H + molecular cation, referred to as c-C H + and I-C H +. Specifically the 33 3333 singles and doubles coupled-cluster method that includes a perturbational estimate of connected triple excitations, CCSD(T), has been used in conjunction with extrapolation to the one-particle basis set limit and corrections for scalar relativity and core correlation have been included. The QFFs have been used to compute highly accurate fundamental vibrational frequencies and other spectroscopic constants using both vibrational 2nd-order perturbation theory and variational methods to solve the nuclear Schroedinger equation. Agreement between our best computed fundamental vibrational frequencies and recent infrared photodissociation experiments is reasonable for most bands, but there are a few exceptions. Possible sources for the discrepancies are discussed. We determine the energy difference between the cyclic and linear forms of C H +, 33 obtaining 27.9 kcal/mol at 0 K, which should be the most reliable available. It is expected that the fundamental vibrational frequencies and spectroscopic constants presented here for c-C H + 33 and I-C H + are the most reliable available for the free gas-phase species and it is hoped that 33 these will be useful in the assignment of future high-resolution laboratory experiments or astronomical observations.

  13. Highly accurate quartic force fields, vibrational frequencies, and spectroscopic constants for cyclic and linear C3H3(+).

    PubMed

    Huang, Xinchuan; Taylor, Peter R; Lee, Timothy J

    2011-05-19

    High levels of theory have been used to compute quartic force fields (QFFs) for the cyclic and linear forms of the C(3)H(3)(+) molecular cation, referred to as c-C(3)H(3)(+) and l-C(3)H(3)(+). Specifically, the singles and doubles coupled-cluster method that includes a perturbational estimate of connected triple excitations, CCSD(T), has been used in conjunction with extrapolation to the one-particle basis set limit, and corrections for scalar relativity and core correlation have been included. The QFFs have been used to compute highly accurate fundamental vibrational frequencies and other spectroscopic constants by use of both vibrational second-order perturbation theory and variational methods to solve the nuclear Schrödinger equation. Agreement between our best computed fundamental vibrational frequencies and recent infrared photodissociation experiments is reasonable for most bands, but there are a few exceptions. Possible sources for the discrepancies are discussed. We determine the energy difference between the cyclic and linear forms of C(3)H(3)(+), obtaining 27.9 kcal/mol at 0 K, which should be the most reliable available. It is expected that the fundamental vibrational frequencies and spectroscopic constants presented here for c-C(3)H(3)(+) and l-C(3)H(3)(+) are the most reliable available for the free gas-phase species, and it is hoped that these will be useful in the assignment of future high-resolution laboratory experiments or astronomical observations. PMID:21510653

  14. Atmospheric Correction of High-Spatial-Resolution Commercial Satellite Imagery Products Using MODIS Atmospheric Products

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary; Holekamp, Kara; Ryan, Robert E.; Vaughan, Ronald; Russell, Jeffrey A.; Prados, Don; Stanley, Thomas

    2005-01-01

    Remotely sensed ground reflectance is the basis for many inter-sensor interoperability or change detection techniques. Satellite inter-comparisons and accurate vegetation indices such as the Normalized Difference Vegetation Index, which is used to describe or to imply a wide variety of biophysical parameters and is defined in terms of near-infrared and redband reflectance, require the generation of accurate reflectance maps. This generation relies upon the removal of solar illumination, satellite geometry, and atmospheric effects and is generally referred to as atmospheric correction. Atmospheric correction of remotely sensed imagery to ground reflectance, however, has been widely applied to only a few systems. In this study, we atmospherically corrected commercially available, high spatial resolution IKONOS and QuickBird imagery using several methods to determine the accuracy of the resulting reflectance maps. We used extensive ground measurement datasets for nine IKONOS and QuickBird scenes acquired over a two-year period to establish reflectance map accuracies. A correction approach using atmospheric products derived from Moderate Resolution Imaging Spectrometer data created excellent reflectance maps and demonstrated a reliable, effective method for reflectance map generation.

  15. High spatial resolution mid-infrared studies of planetary systems

    NASA Astrophysics Data System (ADS)

    Skemer, Andrew

    I present the results of six papers related the formation and evolution of planets and planetary systems, all of which are based on high-resolution, ground-based, mid-infrared observations. The first three chapters are studies of T Tauri binaries. T Tauri stars are young, low mass stars, whose disks form the building blocks of extrasolar planets. The first chapter is a study of the 0.68"/0.12" triple system, T Tauri. Our spatially resolved N-band photometry reveals silicate absorption towards one component, T Tau Sa, indicating the presence of an edge-on disk, which is in contrast to the other components. The second chapter is an adaptive optics fed N-band spectroscopy study of the 0.88" binary, UY Aur. We find that the dust grains around UY Aur A are ISM-like, while the mineralogy of the dust around UY Aur B is more uncertain, due to self-extinction. The third chapter presents a survey of spatially resolved silicate spectroscopy for nine T Tauri binaries. We find with 90%-95% confidence that the silicate features of the binaries are more similar than those of randomly paired single stars. This implies that a shared binary property, such as age or composition, is an important parameter in dust grain evolution. The fourth chapter is a study of the planetary system, 2MASS 1207. We explore the source of 2MASS 1207 b's under-luminosity, which has typically been explained as the result of an edge-on disk of large, grey-extincting dust grains. We find that the edge-on disk theory is incompatible with several lines of evidence, and suggest that 2MASS 1207 b's appearance can be explained by a thick cloudy atmosphere, which might be typical among young, planetary systems. The fifth chapter is a study of the white dwarf, Sirius B, which in the context of this thesis is being studied as a post-planetary system. Our N-band imaging demonstrates that Sirius B does not have an infrared excess, in contrast to previous results. The sixth chapter is a study of mid

  16. High-Frequency CTD Measurements for Accurate GPS/acoustic Sea-floor Crustal Deformation Measurement System

    NASA Astrophysics Data System (ADS)

    Tadokoro, K.; Yasuda, K.; Taniguchi, S.; Uemura, Y.; Matsuhiro, K.

    2015-12-01

    The GPS/acoustic sea-floor crustal deformation measurement system has developed as a useful tool to observe tectonic deformation especially at subduction zones. One of the factors preventing accurate GPS/acoustic sea-floor crustal deformation measurement is horizontal heterogeneity of sound speed in the ocean. It is therefore necessary to measure the gradient directly from sound speed structure. We report results of high-frequency CTD measurements using Underway CTD (UCTD) in the Kuroshio region. We perform the UCTD measurements on May 2nd, 2015 at two stations (TCA and TOA) above the sea-floor benchmarks installed across the Nankai Trough, off the south-east of Kii Peninsula, middle Japan. The number of measurement points is six at each station along circles with a diameter of 1.8 nautical miles around the sea-floor benchmark. The stations TCA and TOA are located on the edge and the interior of the Kuroshio current, respectively, judging from difference in sea water density measured at the two stations, as well as a satellite image of sea-surface temperature distribution. We detect a sound speed gradient of high speeds in the southern part and low speeds in the northern part at the two stations. At the TCA station, the gradient is noticeable down to 300 m in depth; the maximum difference in sound speed is +/- 5 m/s. The sound speed difference is as small as +/- 1.3 m/s at depths below 300 m, which causes seafloor benchmark positioning error as large as 1 m. At the TOA station, the gradient is extremely small down to 100 m in depth. The maximum difference in sound speed is less than +/- 0.3 m/s that is negligible small for seafloor benchmark positioning error. Clear gradient of high speed is observed to the depths; the maximum difference in sound speed is +/- 0.8-0.9 m/s, causing seafloor benchmark positioning error of several tens centimeters. The UCTD measurement is effective tool to detect sound speed gradient. We establish a method for accurate sea

  17. LiF TLD-100 as a Dosimeter in High Energy Proton Beam Therapy-Can It Yield Accurate Results?

    SciTech Connect

    Zullo, John R. Kudchadker, Rajat J.; Zhu, X. Ronald; Sahoo, Narayan; Gillin, Michael T.

    2010-04-01

    In the region of high-dose gradients at the end of the proton range, the stopping power ratio of the protons undergoes significant changes, allowing for a broad spectrum of proton energies to be deposited within a relatively small volume. Because of the potential linear energy transfer dependence of LiF TLD-100 (thermolumescent dosimeter), dose measurements made in the distal fall-off region of a proton beam may be less accurate than those made in regions of low-dose gradients. The purpose of this study is to determine the accuracy and precision of dose measured using TLD-100 for a pristine Bragg peak, particularly in the distal fall-off region. All measurements were made along the central axis of an unmodulated 200-MeV proton beam from a Probeat passive beam-scattering proton accelerator (Hitachi, Ltd., Tokyo, Japan) at varying depths along the Bragg peak. Measurements were made using TLD-100 powder flat packs, placed in a virtual water slab phantom. The measurements were repeated using a parallel plate ionization chamber. The dose measurements using TLD-100 in a proton beam were accurate to within {+-}5.0% of the expected dose, previously seen in our past photon and electron measurements. The ionization chamber and the TLD relative dose measurements agreed well with each other. Absolute dose measurements using TLD agreed with ionization chamber measurements to within {+-} 3.0 cGy, for an exposure of 100 cGy. In our study, the differences in the dose measured by the ionization chamber and those measured by TLD-100 were minimal, indicating that the accuracy and precision of measurements made in the distal fall-off region of a pristine Bragg peak is within the expected range. Thus, the rapid change in stopping power ratios at the end of the range should not affect such measurements, and TLD-100 may be used with confidence as an in vivo dosimeter for proton beam therapy.

  18. Modern high spatial resolution approaches to crustal evolution studies - pitfalls and progress

    NASA Astrophysics Data System (ADS)

    Whitehouse, M. J.

    2012-12-01

    Developments in analytical techniques for in situ geochronology and isotope geochemistry over the past few decades have contributed greatly to our understanding of the processes of Precambrian crustal evolution, plate tectonics, the development of Earth's hydrosphere and atmosphere and conditions for the development of life on Earth. The further back in time we go, however, the more complex the geology, requiring that we unravel and/or try to see through multiple phases of disturbance. Such geological complexity complicates interpretation and can lead to conflicting viewpoints on such key questions as when plate tectonics began on Earth, when it evolved to a process essentially similar to that of today and the nature and habitability of a potentially pre-plate tectonic Earth in the Hadean. This presentation will review, with case studies, some of the crucial aspects of applying and interpreting high spatial resolution in situ methods and some of the potential pitfalls. Obtaining accurate and precise geochronology is an essential first step in any study of Precambrian geology, whether it is the primary goal or provides a supporting framework to other diverse applications. To this end, high spatial resolution secondary ion mass spectrometry (SIMS) and laser ablation inductiively coupled plasma mass spectrometry (LA-ICPMS), typically combined with relevant imaging methods such as cathode luminescence (CL) are widely used to investigate the U-Pb systematics of complex zircon. In general precision is merely an analytical hurdle that we are good (and continually getting better) at clearing, but accuracy commonly contains not just an analytical element (e.g. calibration of standards) but also a considerable subjective element in order to unravel the commonly polyphase evolution of early Precambrian zircon. Examples of such problematic interpretations from the Neoarchean Lewisian Complex of northwest Scotland and the Paleoarchean Napier Complex of Antarctica will be

  19. Accurate and High-Coverage Immune Repertoire Sequencing Reveals Characteristics of Antibody Repertoire Diversification in Young Children with Malaria

    NASA Astrophysics Data System (ADS)

    Jiang, Ning

    Accurately measuring the immune repertoire sequence composition, diversity, and abundance is important in studying repertoire response in infections, vaccinations, and cancer immunology. Using molecular identifiers (MIDs) to tag mRNA molecules is an effective method in improving the accuracy of immune repertoire sequencing (IR-seq). However, it is still difficult to use IR-seq on small amount of clinical samples to achieve a high coverage of the repertoire diversities. This is especially challenging in studying infections and vaccinations where B cell subpopulations with fewer cells, such as memory B cells or plasmablasts, are often of great interest to study somatic mutation patterns and diversity changes. Here, we describe an approach of IR-seq based on the use of MIDs in combination with a clustering method that can reveal more than 80% of the antibody diversity in a sample and can be applied to as few as 1,000 B cells. We applied this to study the antibody repertoires of young children before and during an acute malaria infection. We discovered unexpectedly high levels of somatic hypermutation (SHM) in infants and revealed characteristics of antibody repertoire development in young children that would have a profound impact on immunization in children.

  20. Ion chromatography as highly suitable method for rapid and accurate determination of antibiotic fosfomycin in pharmaceutical wastewater.

    PubMed

    Zeng, Ping; Xie, Xiaolin; Song, Yonghui; Liu, Ruixia; Zhu, Chaowei; Galarneau, Anne; Pic, Jean-Stéphane

    2014-01-01

    A rapid and accurate ion chromatography (IC) method (limit of detection as low as 0.06 mg L(-1)) for fosfomycin concentration determination in pharmaceutical industrial wastewater was developed. This method was compared with the performance of high performance liquid chromatography determination (with a high detection limit of 96.0 mg L(-1)) and ultraviolet spectrometry after reacting with alizarin (difficult to perform in colored solutions). The accuracy of the IC method was established in the linear range of 1.0-15.0 mg L(-1) and a linear correlation was found with a correlation coefficient of 0.9998. The recoveries of fosfomycin from industrial pharmaceutical wastewater at spiking concentrations of 2.0, 5.0 and 8.0 mg L(-1) ranged from 81.91 to 94.74%, with a relative standard deviation (RSD) from 1 to 4%. The recoveries of effluent from a sequencing batch reactor treated fosfomycin with activated sludge at spiking concentrations of 5.0, 8.0, 10.0 mg L(-1) ranging from 98.25 to 99.91%, with a RSD from 1 to 2%. The developed IC procedure provided a rapid, reliable and sensitive method for the determination of fosfomycin concentration in industrial pharmaceutical wastewater and samples containing complex components.

  1. Highly Accurate Semi-Empirical IR Line Lists of Asymmetric SO2 Isotopologues: SO18O and SO17O

    NASA Astrophysics Data System (ADS)

    Huang, X.; Schwenke, D.; Lee, T. J.

    2015-12-01

    Atmosphere models and simulations of Venus, Mars, and Exo-planets will greatly benefit from complete and accurate Infrared spectra data of important molecules such as SO2 and CO2. Currently, high resolution spectra data for SO2 is very limited at 296K and mainly for the primary isotopologue 626. It cannot effectively support the observed data analysis and simulations. Recently we published a semi-empirically refined potential energy surface, denoted Ames-1, and Ames-296K IR line lists for SO2 626 and a few symmetric isotopologues including 646, 636, 666 and 828. The accuracy of line positions is around 0.01 - 0.03 cm-1 for most transitions. For intensities, most deviations are less than 5-15%. Now we have carried out new potential energy surface refinements by including latest experimental data and those of isotopologues. On the newly fitted surface, for the first time we have computed 296K line lists for the two most abundant asymmetric isotopologues, SO2 628 and SO2 627. We will present the spectra simulations of SO2 628 and SO2 627, and compare it with latest high resolution experimental spectroscopy of SO2 628. A composite "natural" line list at 296K is also available with terrestial abundances. These line lists will be available to download at http://huang.seti.org.

  2. Highly sensitive and accurate screening of 40 dyes in soft drinks by liquid chromatography-electrospray tandem mass spectrometry.

    PubMed

    Feng, Feng; Zhao, Yansheng; Yong, Wei; Sun, Li; Jiang, Guibin; Chu, Xiaogang

    2011-06-15

    A method combining solid phase extraction with high performance liquid chromatography-electrospray ionization tandem mass spectrometry was developed for the highly sensitive and accurate screening of 40 dyes, most of which are banned in foods. Electrospray ionization tandem mass spectrometry was used to identify and quantify a large number of dyes for the first time, and demonstrated greater accuracy and sensitivity than the conventional liquid chromatography-ultraviolet/visible methods. The limits of detection at a signal-to-noise ratio of 3 for the dyes are 0.0001-0.01 mg/L except for Tartrazine, Amaranth, New Red and Ponceau 4R, with detection limits of 0.5, 0.25, 0.125 and 0.125 mg/L, respectively. When this method was applied to screening of dyes in soft drinks, the recoveries ranged from 91.1 to 105%. This method has been successfully applied to screening of illegal dyes in commercial soft drink samples, and it is valuable to ensure the safety of food.

  3. A novel, integrated PET-guided MRS technique resulting in more accurate initial diagnosis of high-grade glioma.

    PubMed

    Kim, Ellen S; Satter, Martin; Reed, Marilyn; Fadell, Ronald; Kardan, Arash

    2016-06-01

    Glioblastoma multiforme (GBM) is the most common and lethal malignant glioma in adults. Currently, the modality of choice for diagnosing brain tumor is high-resolution magnetic resonance imaging (MRI) with contrast, which provides anatomic detail and localization. Studies have demonstrated, however, that MRI may have limited utility in delineating the full tumor extent precisely. Studies suggest that MR spectroscopy (MRS) can also be used to distinguish high-grade from low-grade gliomas. However, due to operator dependent variables and the heterogeneous nature of gliomas, the potential for error in diagnostic accuracy with MRS is a concern. Positron emission tomography (PET) imaging with (11)C-methionine (MET) and (18)F-fluorodeoxyglucose (FDG) has been shown to add additional information with respect to tumor grade, extent, and prognosis based on the premise of biochemical changes preceding anatomic changes. Combined PET/MRS is a technique that integrates information from PET in guiding the location for the most accurate metabolic characterization of a lesion via MRS. We describe a case of glioblastoma multiforme in which MRS was initially non-diagnostic for malignancy, but when MRS was repeated with PET guidance, demonstrated elevated choline/N-acetylaspartate (Cho/NAA) ratio in the right parietal mass consistent with a high-grade malignancy. Stereotactic biopsy, followed by PET image-guided resection, confirmed the diagnosis of grade IV GBM. To our knowledge, this is the first reported case of an integrated PET/MRS technique for the voxel placement of MRS. Our findings suggest that integrated PET/MRS may potentially improve diagnostic accuracy in high-grade gliomas.

  4. High spatial and temporal resolution studies of ferroelectric thin films

    NASA Astrophysics Data System (ADS)

    Hubert, Charles Rankin, Jr.

    The subject of this thesis is the investigation of the polar structure and dynamics of ferroelectric thin films using newly developed high resolution optical, scanning- force microscopy and time-resolved methods. A technique based on confocal scanning optical microscopy (CSOM) is used to image the ferroelectric polarization of BaxSr1-xTiO 3 (BST) thin films at room temperature with sub-micron spatial resolution. Films of both paraelectric (x = 0.5) and ferroelectric ( x = 0.8) compositions show a coexistence of both paraelectric and ferroelectric phases on the smallest scale resolvable with this technique. These results suggest that non-uniform stress is responsible for the strong inhomogeneous thermal broadening of the ferroelectric phase transition, and that dielectric loss in thin films may be dominated by a relatively small fraction of nanometer-sized regions. Apertureless near-field scanning optical microscopy (ANSOM) is used to map the inhomogeneous ferroelectric polarization in BaxSr 1-xTiO3 thin films. Images of nanometer-scale ferroelectric domains in BaxSr1-xTiO3 thin films are obtained with 30 Å spatial resolution using ANSOM. The images exhibit inhomogeneities in the ferroelectric polarization over the smallest scales that can be observed, and are largely uncorrelated with topographic features. The application of an in-plane static electric field causes domain reorientation and domain-wall motion over distances as small as 40 Å. These results demonstrate the promise of ANSOM for imaging near-atomic-scale polarization fluctuations in ferroelectric materials. Interferometric ANSOM is described in detail, including a practical description of how ANSOM images are acquired. A discussion of the various contrast mechanisms in ANSOM is followed by a prescription for eliminating a certain class of topographic artifacts. For the imaging of polarization in ferroelectric thin films, the linear electro-optic effect provides the central contrast mechanism. High

  5. Estimating Regional Changes in Soil Carbon with High Spatial Resolution

    SciTech Connect

    West, Tristram O.; Brandt, Craig C; Marland, Gregg; De La Torre Ugarte, Daniel G; Larson, James; Hellwinckel, Chad M; Wilson, Bradly; Tyler, Donald G; Nelson, Richard G

    2008-01-01

    To manage lands locally for carbon sequestration and for emissions reductions it is useful to have a system that can monitor and predict changes in soil carbon and greenhouse gas emissions with high spatial resolution. We are developing a carbon accounting framework that can estimate carbon dynamics and net emissions associated with changes in land management. One component of this framework integrates field measurements, inventory data, and remote sensing products to estimate changes in soil carbon and to estimate where these changes are likely to occur at a sub-county (30m x 30m) resolution. We applied this framework component to a mid-western region of the US that consists of 679 counties approximately centered around Iowa. We estimate the 1990 baseline soil carbon to a maximum depth of 3m for this region to be 4,117 Tg C. Cumulative soil carbon accumulation of 70.3 Tg C is estimated for this region between 1991-2000, of which 33.8 Tg C is due to changes in tillage intensity. Without accounting for soil carbon loss following changes to more intensive tillage practices, our estimate increases to 45.0 Tg C. This difference indicates that on-site permanence of soil carbon associated with a change to less intensive tillage practices is approximately 75% if no additional economic incentives are provided for soil carbon sequestration practices. This carbon accounting framework offers a method to integrate inventory and remote sensing data on an annual basis and to transparently account for alternating annual trends in land management and associated carbon stocks and fluxes.

  6. Hadoop-GIS: A High Performance Spatial Data Warehousing System over MapReduce.

    PubMed

    Aji, Ablimit; Wang, Fusheng; Vo, Hoang; Lee, Rubao; Liu, Qiaoling; Zhang, Xiaodong; Saltz, Joel

    2013-08-01

    Support of high performance queries on large volumes of spatial data becomes increasingly important in many application domains, including geospatial problems in numerous fields, location based services, and emerging scientific applications that are increasingly data- and compute-intensive. The emergence of massive scale spatial data is due to the proliferation of cost effective and ubiquitous positioning technologies, development of high resolution imaging technologies, and contribution from a large number of community users. There are two major challenges for managing and querying massive spatial data to support spatial queries: the explosion of spatial data, and the high computational complexity of spatial queries. In this paper, we present Hadoop-GIS - a scalable and high performance spatial data warehousing system for running large scale spatial queries on Hadoop. Hadoop-GIS supports multiple types of spatial queries on MapReduce through spatial partitioning, customizable spatial query engine RESQUE, implicit parallel spatial query execution on MapReduce, and effective methods for amending query results through handling boundary objects. Hadoop-GIS utilizes global partition indexing and customizable on demand local spatial indexing to achieve efficient query processing. Hadoop-GIS is integrated into Hive to support declarative spatial queries with an integrated architecture. Our experiments have demonstrated the high efficiency of Hadoop-GIS on query response and high scalability to run on commodity clusters. Our comparative experiments have showed that performance of Hadoop-GIS is on par with parallel SDBMS and outperforms SDBMS for compute-intensive queries. Hadoop-GIS is available as a set of library for processing spatial queries, and as an integrated software package in Hive. PMID:24187650

  7. Hadoop-GIS: A High Performance Spatial Data Warehousing System over MapReduce.

    PubMed

    Aji, Ablimit; Wang, Fusheng; Vo, Hoang; Lee, Rubao; Liu, Qiaoling; Zhang, Xiaodong; Saltz, Joel

    2013-08-01

    Support of high performance queries on large volumes of spatial data becomes increasingly important in many application domains, including geospatial problems in numerous fields, location based services, and emerging scientific applications that are increasingly data- and compute-intensive. The emergence of massive scale spatial data is due to the proliferation of cost effective and ubiquitous positioning technologies, development of high resolution imaging technologies, and contribution from a large number of community users. There are two major challenges for managing and querying massive spatial data to support spatial queries: the explosion of spatial data, and the high computational complexity of spatial queries. In this paper, we present Hadoop-GIS - a scalable and high performance spatial data warehousing system for running large scale spatial queries on Hadoop. Hadoop-GIS supports multiple types of spatial queries on MapReduce through spatial partitioning, customizable spatial query engine RESQUE, implicit parallel spatial query execution on MapReduce, and effective methods for amending query results through handling boundary objects. Hadoop-GIS utilizes global partition indexing and customizable on demand local spatial indexing to achieve efficient query processing. Hadoop-GIS is integrated into Hive to support declarative spatial queries with an integrated architecture. Our experiments have demonstrated the high efficiency of Hadoop-GIS on query response and high scalability to run on commodity clusters. Our comparative experiments have showed that performance of Hadoop-GIS is on par with parallel SDBMS and outperforms SDBMS for compute-intensive queries. Hadoop-GIS is available as a set of library for processing spatial queries, and as an integrated software package in Hive.

  8. Hadoop-GIS: A High Performance Spatial Data Warehousing System over MapReduce

    PubMed Central

    Aji, Ablimit; Wang, Fusheng; Vo, Hoang; Lee, Rubao; Liu, Qiaoling; Zhang, Xiaodong; Saltz, Joel

    2013-01-01

    Support of high performance queries on large volumes of spatial data becomes increasingly important in many application domains, including geospatial problems in numerous fields, location based services, and emerging scientific applications that are increasingly data- and compute-intensive. The emergence of massive scale spatial data is due to the proliferation of cost effective and ubiquitous positioning technologies, development of high resolution imaging technologies, and contribution from a large number of community users. There are two major challenges for managing and querying massive spatial data to support spatial queries: the explosion of spatial data, and the high computational complexity of spatial queries. In this paper, we present Hadoop-GIS – a scalable and high performance spatial data warehousing system for running large scale spatial queries on Hadoop. Hadoop-GIS supports multiple types of spatial queries on MapReduce through spatial partitioning, customizable spatial query engine RESQUE, implicit parallel spatial query execution on MapReduce, and effective methods for amending query results through handling boundary objects. Hadoop-GIS utilizes global partition indexing and customizable on demand local spatial indexing to achieve efficient query processing. Hadoop-GIS is integrated into Hive to support declarative spatial queries with an integrated architecture. Our experiments have demonstrated the high efficiency of Hadoop-GIS on query response and high scalability to run on commodity clusters. Our comparative experiments have showed that performance of Hadoop-GIS is on par with parallel SDBMS and outperforms SDBMS for compute-intensive queries. Hadoop-GIS is available as a set of library for processing spatial queries, and as an integrated software package in Hive. PMID:24187650

  9. The Sun at high spatial resolution: The physics of small spatial structures in a magnetized medium

    NASA Technical Reports Server (NTRS)

    Rosner, R. T.

    1986-01-01

    An attempt is made to provide a perspective on the problem of spatial structuring on scales smaller than can presently be directly and regularly observed from the ground or with which current space-based instrumentation can be anticipated. There is abundant evidence from both observations and theory that such spatial structuring of the solar outer atmosphere is ubiquitous not only on the observed scales, but also on spatial scales down to (at least) the subarcsecond range. This is not to say that the results to be obtained from observations on these small scales can be anticipated: quite the opposite. What is clear instead is that many of the classic problems of coronal and chromospheric activity - involving the basic dissipative nature of magnetized plasmas - will be seen from a novel perspective at these scales, and that there are reasons for believing that dynamical processes of importance to activity on presently-resolved scales will themselves begin to be resolved on the sub-arcsecond level. Since the Sun is the only astrophysical laboratory for which there is any hope of studying these processes in any detail, this observatioinal opportunity is an exciting prospect for any student of magnetic activity in astrophysics.

  10. Visualization of microvascularity in glioblastoma multiforme with 8-T high-spatial-resolution MR imaging.

    PubMed

    Christoforidis, Gregory A; Grecula, John C; Newton, Herbert B; Kangarlu, Allahyar; Abduljalil, Amir M; Schmalbrock, Petra; Chakeres, Donald W

    2002-10-01

    We used 8-T high-spatial-resolution gradient-echo MR imaging to directly visualize microvascularity in pathologically proved glioblastoma multiforme. Images were compared with 1.5-T high-spatial-resolution fast spin-echo T2-weighted images and digital subtraction angiograms. Preliminary data indicate that 8-T high-spatial-resolution MR imaging may enable the identification of areas of abnormal microvascularity in glioblastoma multiforme that are not visible with other routine clinical techniques.

  11. 3D high spectral and spatial resolution imaging of ex vivo mouse brain

    SciTech Connect

    Foxley, Sean Karczmar, Gregory S.; Domowicz, Miriam; Schwartz, Nancy

    2015-03-15

    the water resonance that is not present at +7.0 Hz and may be specific to white matter anatomy. Moreover, a frequency shift of 6.76 ± 0.55 Hz was measured between the molecular and granular layers of the cerebellum. This shift is demonstrated in corresponding spectra; water peaks from voxels in the molecular and granular layers are consistently 2 bins apart (7.0 Hz, as dictated by the spectral resolution) from one another. Conclusions: High spectral and spatial resolution MR imaging has the potential to accurately measure the changes in the water resonance in small voxels. This information can guide optimization and interpretation of more commonly used, more rapid imaging methods that depend on image contrast produced by local susceptibility gradients. In addition, with improved sampling methods, high spectral and spatial resolution data could be acquired in reasonable run times, and used for in vivo scans to increase sensitivity to variations in local susceptibility.

  12. FTS Studies of the 17O Enriched Isotopologues of CO_2 Toward Creating a Complete and Highly Accurate Reference Standard

    NASA Astrophysics Data System (ADS)

    Elliott, Ben; Sung, Keeyoon; Brown, Linda; Miller, Charles

    2014-06-01

    The proliferation and increased abilities of remote sensing missions for the monitoring of planetary atmospheric gas species has spurred the need for complete and accurate spectroscopic reference standards. As a part of our ongoing effort toward creating a global carbon dioxide (CO2) frequency reference standard, we report new FTS measurements of the 17O enriched isotopologues of CO2. The first measurements were taken in the ν3 region (2200 - 2450 cm-1, 65 - 75 THz), have absolute calibration accuracies of 100 kHz (3E-6 cm-1), comparable to the uncertainties for typical sub-millimeter/THz spectroscopy. Such high absolute calibration accuracy has become regular procedure for the cases of linear molecules such as CO2 and CO for FTS measurements at JPL, and enables us to produce measured transition frequencies for entire bands with accuracies that rival those of early heterodyne measurements for individual beat notes. Additionally, by acquiring spectra of multiple carbon dioxide isotopologues simultaneously, we have begun to construct a self-consistent frequency grid based on CO2 that extends from 20 - 200 THz. These new spectroscopic reference standards are a significant step towards minimizing CO2 retrieval errors from remote sensing applications, especially those involving targets with predominantly CO2 atmospheres such as Mars, Venus and candidate terrestrial exoplanets where minor isotopologues will make significant contributions to the radiance signals.

  13. A highly accurate dynamic contact angle algorithm for drops on inclined surface based on ellipse-fitting.

    PubMed

    Xu, Z N; Wang, S Y

    2015-02-01

    To improve the accuracy in the calculation of dynamic contact angle for drops on the inclined surface, a significant number of numerical drop profiles on the inclined surface with different inclination angles, drop volumes, and contact angles are generated based on the finite difference method, a least-squares ellipse-fitting algorithm is used to calculate the dynamic contact angle. The influences of the above three factors are systematically investigated. The results reveal that the dynamic contact angle errors, including the errors of the left and right contact angles, evaluated by the ellipse-fitting algorithm tend to increase with inclination angle/drop volume/contact angle. If the drop volume and the solid substrate are fixed, the errors of the left and right contact angles increase with inclination angle. After performing a tremendous amount of computation, the critical dimensionless drop volumes corresponding to the critical contact angle error are obtained. Based on the values of the critical volumes, a highly accurate dynamic contact angle algorithm is proposed and fully validated. Within nearly the whole hydrophobicity range, it can decrease the dynamic contact angle error in the inclined plane method to less than a certain value even for different types of liquids.

  14. Quantifying mangrove chlorophyll from high spatial resolution imagery

    NASA Astrophysics Data System (ADS)

    Heenkenda, Muditha K.; Joyce, Karen E.; Maier, Stefan W.; de Bruin, Sytze

    2015-10-01

    Lower than expected chlorophyll concentration of a plant can directly limit photosynthetic activity, and resultant primary production. Low chlorophyll concentration may also indicate plant physiological stress. Compared to other terrestrial vegetation, mangrove chlorophyll variations are poorly understood. This study quantifies the spatial distribution of mangrove canopy chlorophyll variation using remotely sensed data and field samples over the Rapid Creek mangrove forest in Darwin, Australia. Mangrove leaf samples were collected and analyzed for chlorophyll content in the laboratory. Once the leaf area index (LAI) of sampled trees was estimated using the digital cover photography method, the canopy chlorophyll contents were calculated. Then, the nonlinear random forests regression algorithm was used to describe the relationship between canopy chlorophyll content and remotely sensed data (WorldView-2 satellite image bands and their spectral transformations), and to estimate the spatial distribution of canopy chlorophyll variation. The imagery was evaluated at full 2 m spatial resolution, as well as at decreased resampled resolutions of 5 m and 10 m. The root mean squared errors with validation samples were 0.82, 0.64 and 0.65 g/m2 for maps at 2 m, 5 m and 10 m spatial resolution respectively. The correlation coefficient was analyzed for the relationship between measured and predicted chlorophyll values. The highest correlation: 0.71 was observed at 5 m spatial resolution (R2 = 0.5). We therefore concluded that estimating mangrove chlorophyll content from remotely sensed data is possible using red, red-edge, NIR1 and NIR2 bands and their spectral transformations as predictors at 5 m spatial resolution.

  15. Predicting Real-Time Soil Carbon Fluxes in Alaska at High Spatial Resolution

    NASA Astrophysics Data System (ADS)

    Pan, J.; Stieglitz, M.; Cheng, Y.; Pan, F.

    2013-12-01

    In this study we employ 3 full years (2009 - 2011) of high spatial resolution (7.5 km) hourly snapshots of snow depth and air temperatures throughout Alaska from Weather Underground (WU). We do so in order to demonstrate the practicalities of using real-time weather data to predict soil CO2 fluxes over large areas. As a preliminary step, hourly snow depth and air temperatures reported from WU were compared with observations from SNOTEL stations. WU reported hourly-daily air temperatures were consistent with observations. Likewise, snow depth in the interior of Alaska and on the North Slope matched observations well. In the Southeast coastal areas, WU reported snow depth were consistently low. We then used a simple empirical ground temperature scheme (Cheng et al., 2010) along with snow depth and air temperatures reported from WU to predict soil temperatures. Using these generated soil temperatures, as well as antecedent precipitation, a simple soil decomposition model was then calibrated with biophysical data from Barrow and Toolik Lake, Alaska. Post-calibration, model parameters were kept fixed and the model was run over the full hourly 2009 - 2011 record for the over 700 stations where we have measured soil carbon profiles. To test robustness, the model was calibrated independently at all location where we have good biophysical information and subsequently run over the remaining stations. These simulations demonstrate the degree to which real-time weather data can be trusted to provide an accurate high spatial resolution picture of daily, monthly, and seasonal soil C fluxes at high latitudes.

  16. High Specificity in Circulating Tumor Cell Identification Is Required for Accurate Evaluation of Programmed Death-Ligand 1

    PubMed Central

    Schultz, Zachery D.; Warrick, Jay W.; Guckenberger, David J.; Pezzi, Hannah M.; Sperger, Jamie M.; Heninger, Erika; Saeed, Anwaar; Leal, Ticiana; Mattox, Kara; Traynor, Anne M.; Campbell, Toby C.; Berry, Scott M.; Beebe, David J.; Lang, Joshua M.

    2016-01-01

    Background Expression of programmed-death ligand 1 (PD-L1) in non-small cell lung cancer (NSCLC) is typically evaluated through invasive biopsies; however, recent advances in the identification of circulating tumor cells (CTCs) may be a less invasive method to assay tumor cells for these purposes. These liquid biopsies rely on accurate identification of CTCs from the diverse populations in the blood, where some tumor cells share characteristics with normal blood cells. While many blood cells can be excluded by their high expression of CD45, neutrophils and other immature myeloid subsets have low to absent expression of CD45 and also express PD-L1. Furthermore, cytokeratin is typically used to identify CTCs, but neutrophils may stain non-specifically for intracellular antibodies, including cytokeratin, thus preventing accurate evaluation of PD-L1 expression on tumor cells. This holds even greater significance when evaluating PD-L1 in epithelial cell adhesion molecule (EpCAM) positive and EpCAM negative CTCs (as in epithelial-mesenchymal transition (EMT)). Methods To evaluate the impact of CTC misidentification on PD-L1 evaluation, we utilized CD11b to identify myeloid cells. CTCs were isolated from patients with metastatic NSCLC using EpCAM, MUC1 or Vimentin capture antibodies and exclusion-based sample preparation (ESP) technology. Results Large populations of CD11b+CD45lo cells were identified in buffy coats and stained non-specifically for intracellular antibodies including cytokeratin. The amount of CD11b+ cells misidentified as CTCs varied among patients; accounting for 33–100% of traditionally identified CTCs. Cells captured with vimentin had a higher frequency of CD11b+ cells at 41%, compared to 20% and 18% with MUC1 or EpCAM, respectively. Cells misidentified as CTCs ultimately skewed PD-L1 expression to varying degrees across patient samples. Conclusions Interfering myeloid populations can be differentiated from true CTCs with additional staining criteria

  17. Accurate and highly efficient calculation of the highly excited pure OH stretching resonances of O(1D)HCl, using a combination of methods.

    PubMed

    Bian, Wensheng; Poirier, Bill

    2004-09-01

    Accurate calculation of the energies and widths of the resonances of HOCl--an important intermediate in the O(1D)HCl reactive system--poses a challenging benchmark for computational methods. The need for very large direct product basis sets, combined with an extremely high density of states, results in difficult convergence for iterative methods. A recent calculation of the highly excited OH stretch mode resonances using the filter diagonalization method, for example, required 462,000 basis functions, and 180,000 iterations. In contrast, using a combination of new methods, we are able to compute the same resonance states to higher accuracy with a basis less than half the size, using only a few hundred iterations-although the CPU cost per iteration is substantially greater. Similar performance enhancements are observed for calculations of the high-lying bound states, as reported in a previous paper [J. Theo. Comput. Chem. 2, 583 (2003)].

  18. High-resolution accurate mass measurements of biomolecules using a new electrospray ionization ion cyclotron resonance mass spectrometer.

    PubMed

    Winger, B E; Hofstadler, S A; Bruce, J E; Udseth, H R; Smith, R D

    1993-07-01

    A novel electrospray ionization/Fourier transform ion cyclotron resonance mass spectrometer based on a 7-T superconducting magnet was developed for high-resolution accurate mass measurements of large biomolecules. Ions formed at atmospheric pressure using electrospray ionization (ESI) were transmitted (through six differential pumping stages) to the trapped ion cell maintained below 10(-9) torr. The increased pumping speed attainable with cryopumping (> 10(5) L/s) allowed brief pressure excursions to above 10(-4) torr, with greatly enhanced trapping efficiencies and subsequent short pumpdown times, facilitating high-resolution mass measurements. A set of electromechanical shutters were also used to minimize the effect of the directed molecular beam produced by the ES1 source and were open only during ion injection. Coupled with the use of the pulsed-valve gas inlet, the trapped ion cell was generally filled to the space charge limit within 100 ms. The use of 10-25 ms ion injection times allowed mass spectra to be obtained from 4 fmol of bovine insulin (Mr 5734) and ubiquitin (Mr 8565, with resolution sufficient to easily resolve the isotopic envelopes and determine the charge states. The microheterogeneity of the glycoprotein ribonuclease B was examined, giving a measured mass of 14,898.74 Da for the most abundant peak in the isotopic envelope of the normally glycosylated protein (i.e., with five mannose and two N-acetylglucosamine residues (an error of approximately 2 ppm) and an average error of approximately 1 ppm for the higher glycosylated and various H3PO4 adducted forms of the protein. Time-domain signals lasting in excess of 80 s were obtained for smaller proteins, producing, for example, a mass resolution of more than 700,000 for the 4(+) charge state (m/z 1434) of insulin. PMID:24227643

  19. A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences.

    PubMed

    Alcantara, Luiz Carlos Junior; Cassol, Sharon; Libin, Pieter; Deforche, Koen; Pybus, Oliver G; Van Ranst, Marc; Galvão-Castro, Bernardo; Vandamme, Anne-Mieke; de Oliveira, Tulio

    2009-07-01

    Human immunodeficiency virus type-1 (HIV-1), hepatitis B and C and other rapidly evolving viruses are characterized by extremely high levels of genetic diversity. To facilitate diagnosis and the development of prevention and treatment strategies that efficiently target the diversity of these viruses, and other pathogens such as human T-lymphotropic virus type-1 (HTLV-1), human herpes virus type-8 (HHV8) and human papillomavirus (HPV), we developed a rapid high-throughput-genotyping system. The method involves the alignment of a query sequence with a carefully selected set of pre-defined reference strains, followed by phylogenetic analysis of multiple overlapping segments of the alignment using a sliding window. Each segment of the query sequence is assigned the genotype and sub-genotype of the reference strain with the highest bootstrap (>70%) and bootscanning (>90%) scores. Results from all windows are combined and displayed graphically using color-coded genotypes. The new Virus-Genotyping Tools provide accurate classification of recombinant and non-recombinant viruses and are currently being assessed for their diagnostic utility. They have incorporated into several HIV drug resistance algorithms including the Stanford (http://hivdb.stanford.edu) and two European databases (http://www.umcutrecht.nl/subsite/spread-programme/ and http://www.hivrdb.org.uk/) and have been successfully used to genotype a large number of sequences in these and other databases. The tools are a PHP/JAVA web application and are freely accessible on a number of servers including: http://bioafrica.mrc.ac.za/rega-genotype/html/, http://lasp.cpqgm.fiocruz.br/virus-genotype/html/, http://jose.med.kuleuven.be/genotypetool/html/.

  20. Adaptive optimal control of highly dissipative nonlinear spatially distributed processes with neuro-dynamic programming.

    PubMed

    Luo, Biao; Wu, Huai-Ning; Li, Han-Xiong

    2015-04-01

    Highly dissipative nonlinear partial differential equations (PDEs) are widely employed to describe the system dynamics of industrial spatially distributed processes (SDPs). In this paper, we consider the optimal control problem of the general highly dissipative SDPs, and propose an adaptive optimal control approach based on neuro-dynamic programming (NDP). Initially, Karhunen-Loève decomposition is employed to compute empirical eigenfunctions (EEFs) of the SDP based on the method of snapshots. These EEFs together with singular perturbation technique are then used to obtain a finite-dimensional slow subsystem of ordinary differential equations that accurately describes the dominant dynamics of the PDE system. Subsequently, the optimal control problem is reformulated on the basis of the slow subsystem, which is further converted to solve a Hamilton-Jacobi-Bellman (HJB) equation. HJB equation is a nonlinear PDE that has proven to be impossible to solve analytically. Thus, an adaptive optimal control method is developed via NDP that solves the HJB equation online using neural network (NN) for approximating the value function; and an online NN weight tuning law is proposed without requiring an initial stabilizing control policy. Moreover, by involving the NN estimation error, we prove that the original closed-loop PDE system with the adaptive optimal control policy is semiglobally uniformly ultimately bounded. Finally, the developed method is tested on a nonlinear diffusion-convection-reaction process and applied to a temperature cooling fin of high-speed aerospace vehicle, and the achieved results show its effectiveness.

  1. Adaptive optimal control of highly dissipative nonlinear spatially distributed processes with neuro-dynamic programming.

    PubMed

    Luo, Biao; Wu, Huai-Ning; Li, Han-Xiong

    2015-04-01

    Highly dissipative nonlinear partial differential equations (PDEs) are widely employed to describe the system dynamics of industrial spatially distributed processes (SDPs). In this paper, we consider the optimal control problem of the general highly dissipative SDPs, and propose an adaptive optimal control approach based on neuro-dynamic programming (NDP). Initially, Karhunen-Loève decomposition is employed to compute empirical eigenfunctions (EEFs) of the SDP based on the method of snapshots. These EEFs together with singular perturbation technique are then used to obtain a finite-dimensional slow subsystem of ordinary differential equations that accurately describes the dominant dynamics of the PDE system. Subsequently, the optimal control problem is reformulated on the basis of the slow subsystem, which is further converted to solve a Hamilton-Jacobi-Bellman (HJB) equation. HJB equation is a nonlinear PDE that has proven to be impossible to solve analytically. Thus, an adaptive optimal control method is developed via NDP that solves the HJB equation online using neural network (NN) for approximating the value function; and an online NN weight tuning law is proposed without requiring an initial stabilizing control policy. Moreover, by involving the NN estimation error, we prove that the original closed-loop PDE system with the adaptive optimal control policy is semiglobally uniformly ultimately bounded. Finally, the developed method is tested on a nonlinear diffusion-convection-reaction process and applied to a temperature cooling fin of high-speed aerospace vehicle, and the achieved results show its effectiveness. PMID:25794375

  2. Improving the quantification of land cover pressure on stream ecological status at the riparian scale using High Spatial Resolution Imagery

    NASA Astrophysics Data System (ADS)

    Tormos, T.; Kosuth, P.; Durrieu, S.; Villeneuve, B.; Wasson, J. G.

    The aim of this paper is to demonstrate the interest of High Spatial Resolution Imagery (HSRI) and the limits of coarse land cover data such as CORINE Land Cover (CLC), for the accurate characterization of land cover structure along river corridors and of its functional links with freshwater ecological status on a large scale. For this purpose, we compared several spatial indicators built from two land cover maps of the Herault River corridor (southern France): one derived from the CLC database, the other derived from HSRI. The HSRI-derived map was obtained using a supervised object-based classification of multi-source remotely-sensed images (SPOT 5 XS-10 m and aerial photography-0.5 m) and presents an overall accuracy of 70%. The comparison between the two sets of spatial indicators highlights that the HSRI-derived map allows more accuracy in the quantification of land cover pressures near the stream: the spatial structure of the river landscape is finely resolved and the main attributes of riparian vegetation can be quantified in a reliable way. The next challenge will consist in developing an operational methodology using HSRI for large-scale mapping of river corridor land cover, for spatial indicator computation and for the development of related pressure/impact models, in order to improve the prediction of stream ecological status.

  3. CLASSIFICATION OF CATTLE ACTIVITY BASED UPON HIGH FREQUENCY SPATIAL POSITIONING

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Animal behaviorists are interested in the spatial pattern of animals on landscapes because of their implications for species survival, resource use, and niche definition, as well as inter- nd intra -specific dominance, facilitation and competition. In the last several years it has become possible t...

  4. Spatial resolution effects on the assessment of evapotranspiration in olive orchards using high resolution thermal imagery

    NASA Astrophysics Data System (ADS)

    Santos, Cristina; Zarco-Tejada, Pablo J.; Lorite, Ignacio J.; Allen, Richard G.

    2013-04-01

    The use of remote sensing techniques for estimating surface energy balance and water consumption has significantly improved the characterization of the agricultural systems by determining accurate information about crop evapotranspiration and stress, mainly for extensive crops. However the use of these methodologies for woody crops has been low due to the difficulty in the accurate characterization of these crops, mainly caused by a coarse resolution of the imagery provided by the most widely used satellites (such as Landsat 5 and 7). The coarse spatial resolution provided by these satellite sensors aggregates into a single pixel the tree crown, sunlit and shaded soil components. These surfaces can each exhibit huge differences in temperature, albedo and vegetation indexes calculated in the visible, near infrared and short-wave infrared regions. Recent studies have found that the use of energy balance approaches can provide useful results for non-homogeneous crops (Santos et al., 2012) but detailed analysis is required to determine the effect of the spatial resolution and the aggregation of the scene components in these heterogeneous canopies. In this study a comparison between different spatial resolutions has been conducted using images from Landsat 7 (with thermal resolution of 60m) and from an airborne thermal (with resolution of 80 cm) flown over olive orchards at different dates coincident with the Landsat overpass. The high resolution thermal imagery was resampled at different scales to generate images with spatial resolution ranging from 0.8 m up to 120m (thermal resolution for Landsat 5 images). The selection of the study area was made to avoid those areas with missing Landsat 7 data caused by SLC-off gaps. The selected area has a total area of around 2500 ha and is located in Southern Spain, in the province of Malaga. The selected area is mainly cultivated with olive orchards with different crop practices (rainfed, irrigated, high density, young and adult

  5. High Fidelity Non-Gravitational Force Models for Precise and Accurate Orbit Determination of TerraSAR-X

    NASA Astrophysics Data System (ADS)

    Hackel, Stefan; Montenbruck, Oliver; Steigenberger, -Peter; Eineder, Michael; Gisinger, Christoph

    Remote sensing satellites support a broad range of scientific and commercial applications. The two radar imaging satellites TerraSAR-X and TanDEM-X provide spaceborne Synthetic Aperture Radar (SAR) and interferometric SAR data with a very high accuracy. The increasing demand for precise radar products relies on sophisticated validation methods, which require precise and accurate orbit products. Basically, the precise reconstruction of the satellite’s trajectory is based on the Global Positioning System (GPS) measurements from a geodetic-grade dual-frequency receiver onboard the spacecraft. The Reduced Dynamic Orbit Determination (RDOD) approach utilizes models for the gravitational and non-gravitational forces. Following a proper analysis of the orbit quality, systematics in the orbit products have been identified, which reflect deficits in the non-gravitational force models. A detailed satellite macro model is introduced to describe the geometry and the optical surface properties of the satellite. Two major non-gravitational forces are the direct and the indirect Solar Radiation Pressure (SRP). Due to the dusk-dawn orbit configuration of TerraSAR-X, the satellite is almost constantly illuminated by the Sun. Therefore, the direct SRP has an effect on the lateral stability of the determined orbit. The indirect effect of the solar radiation principally contributes to the Earth Radiation Pressure (ERP). The resulting force depends on the sunlight, which is reflected by the illuminated Earth surface in the visible, and the emission of the Earth body in the infrared spectra. Both components of ERP require Earth models to describe the optical properties of the Earth surface. Therefore, the influence of different Earth models on the orbit quality is assessed within the presentation. The presentation highlights the influence of non-gravitational force and satellite macro models on the orbit quality of TerraSAR-X.

  6. Imaging high-dimensional spatial entanglement with a camera

    PubMed Central

    Edgar, M.P.; Tasca, D.S.; Izdebski, F.; Warburton, R.E.; Leach, J.; Agnew, M.; Buller, G.S.; Boyd, R.W.; Padgett, M.J.

    2012-01-01

    The light produced by parametric down-conversion shows strong spatial entanglement that leads to violations of EPR criteria for separability. Historically, such studies have been performed by scanning a single-element, single-photon detector across a detection plane. Here we show that modern electron-multiplying charge-coupled device cameras can measure correlations in both position and momentum across a multi-pixel field of view. This capability allows us to observe entanglement of around 2,500 spatial states and demonstrate Einstein–Podolsky–Rosen type correlations by more than two orders of magnitude. More generally, our work shows that cameras can lead to important new capabilities in quantum optics and quantum information science. PMID:22871804

  7. HIGH SPATIAL RESOLUTION IMAGING OF INERTIAL FUSION TARGET PLASMAS USING BUBBLE NEWTRON DETECTORS

    SciTech Connect

    FISHER,RK

    2002-10-01

    scattering system to record the bubble locations a few microseconds after the neutron exposure when the bubbles have grown to be {approx} 10 {micro}m in diameter. The next major task planned under this grant will be to perform experimental tests to determine how accurately the spatial distribution of the bubble density can be measured under the conditions expected in NIF. The bubble density will be large enough to produce significant overlap in the two-dimensional images, so that they will need to be able to measure bubbles behind bubbles. One of the goals of these tests is to determine if a simple light transmission approach is feasible. One of the concerns at very high bubble densities is that light scattered out of the path can be rescattered back into the transmitted light path by bubbles in neighboring paths.

  8. Analysis of High Temporal and Spatial Observations of Hurricane Joaquin During TCI-15

    NASA Technical Reports Server (NTRS)

    Creasey, Robert; Elsberry, Russell L.; Velden, Chris; Cecil, Daniel J.; Bell, Michael; Hendricks, Eric A.

    2016-01-01

    Objectives: Provide an example of why analysis of high density soundings across Hurricane Joaquin also require highly accurate center positions; Describe technique for calculating 3-D zero-wind center positions from the highly accurate GPS positions of sequences of High-Density Sounding System (HDSS) soundings as they fall from 10 km to the ocean surface; Illustrate the vertical tilt of the vortex above 4-5 km during two center passes through Hurricane Joaquin on 4 October 2015.

  9. High-precision topography measurement through accurate in-focus plane detection with hybrid digital holographic microscope and white light interferometer module.

    PubMed

    Liżewski, Kamil; Tomczewski, Sławomir; Kozacki, Tomasz; Kostencka, Julianna

    2014-04-10

    High-precision topography measurement of micro-objects using interferometric and holographic techniques can be realized provided that the in-focus plane of an imaging system is very accurately determined. Therefore, in this paper we propose an accurate technique for in-focus plane determination, which is based on coherent and incoherent light. The proposed method consists of two major steps. First, a calibration of the imaging system with an amplitude object is performed with a common autofocusing method using coherent illumination, which allows for accurate localization of the in-focus plane position. In the second step, the position of the detected in-focus plane with respect to the imaging system is measured with white light interferometry. The obtained distance is used to accurately adjust a sample with the precision required for the measurement. The experimental validation of the proposed method is given for measurement of high-numerical-aperture microlenses with subwavelength accuracy.

  10. A new direct absorption measurement for high precision and accurate measurement of water vapor in the UT/LS

    NASA Astrophysics Data System (ADS)

    Sargent, M. R.; Sayres, D. S.; Smith, J. B.; Anderson, J.

    2011-12-01

    Highly accurate and precise water vapor measurements in the upper troposphere and lower stratosphere are critical to understanding the climate feedbacks of water vapor and clouds in that region. However, the continued disagreement among water vapor measurements (~1 - 2 ppmv) are too large to constrain the role of different hydration and dehydration mechanisms operating in the UT/LS, with model validation dependent upon which dataset is chosen. In response to these issues, we present a new instrument for measurement of water vapor in the UT/LS that was flown during the April 2011 MACPEX mission out of Houston, TX. The dual axis instrument combines the heritage and validated accuracy of the Harvard Lyman-alpha instrument with a newly designed direct IR absorption instrument, the Harvard Herriott Hygrometer (HHH). The Lyman-alpha detection axis has flown aboard NASA's WB-57 and ER2 aircraft since 1994, and provides a requisite link between the new HHH instrument and the long history of Harvard water vapor measurements. The instrument utilizes the highly sensitive Lyman-alpha photo-fragment fluorescence detection method; its accuracy has been demonstrated though rigorous laboratory calibrations and in situ diagnostic procedures. The Harvard Herriott Hygrometer employs a fiber coupled near-IR laser with state-of-the-art electronics to measure water vapor via direct absorption in a spherical Herriott cell of 10 cm length. The instrument demonstrated in-flight precision of 0.1 ppmv (1-sec, 1-sigma) at mixing ratios as low as 5 ppmv with accuracies of 10% based on careful laboratory calibrations and in-flight performance. We present a description of the measurement technique along with our methodology for calibration and details of the measurement uncertainties. The simultaneous utilization of radically different measurement techniques in a single duct in the new Harvard Water Vapor (HWV) instrument allows for the constraint of systematic errors inherent in each technique

  11. High-spatial-resolution mapping of precipitable water vapour using SAR interferograms, GPS observations and ERA-Interim reanalysis

    NASA Astrophysics Data System (ADS)

    Tang, Wei; Liao, Mingsheng; Zhang, Lu; Li, Wei; Yu, Weimin

    2016-09-01

    A high spatial and temporal resolution of the precipitable water vapour (PWV) in the atmosphere is a key requirement for the short-scale weather forecasting and climate research. The aim of this work is to derive temporally differenced maps of the spatial distribution of PWV by analysing the tropospheric delay "noise" in interferometric synthetic aperture radar (InSAR). Time series maps of differential PWV were obtained by processing a set of ENVISAT ASAR (Advanced Synthetic Aperture Radar) images covering the area of southern California, USA from 6 October 2007 to 29 November 2008. To get a more accurate PWV, the component of hydrostatic delay was calculated and subtracted by using ERA-Interim reanalysis products. In addition, the ERA-Interim was used to compute the conversion factors required to convert the zenith wet delay to water vapour. The InSAR-derived differential PWV maps were calibrated by means of the GPS PWV measurements over the study area. We validated our results against the measurements of PWV derived from the Medium Resolution Imaging Spectrometer (MERIS) which was located together with the ASAR sensor on board the ENVISAT satellite. Our comparative results show strong spatial correlations between the two data sets. The difference maps have Gaussian distributions with mean values close to zero and standard deviations below 2 mm. The advantage of the InSAR technique is that it provides water vapour distribution with a spatial resolution as fine as 20 m and an accuracy of ˜ 2 mm. Such high-spatial-resolution maps of PWV could lead to much greater accuracy in meteorological understanding and quantitative precipitation forecasts. With the launch of Sentinel-1A and Sentinel-1B satellites, every few days (6 days) new SAR images can be acquired with a wide swath up to 250 km, enabling a unique operational service for InSAR-based water vapour maps with unprecedented spatial and temporal resolution.

  12. Side-illuminating LED luminaires with accurate projection in high uniformity and high optical utilization factor for large-area field illumination.

    PubMed

    Lo, Yi-Chien; Cai, Jhih-You; Tasi, Ming-Shiou; Tasi, Zheng-Yu; Sun, Ching-Cherng

    2014-03-10

    A novel light luminaire is proposed and experimentally analyzed, which accurately projects light into a large rectangular area to achieve uniform illumination and a high optical utilization factor at the target. Side-illuminating luminaires for large-scale illuminated area are typically set with an elevated tilt angle to enlarge the illuminated area. However, the light pattern is bent thereby reducing the uniformity and optical utilization factor at the target. In this paper, we propose an efficient and useful approach with a rotationally symmetric projection lens that is trimmed to adjust the bending effect and to form a rectangular illumination light pattern on the ground. The design concept is demonstrated and verified. Several potential applications such as highly uniform illumination with fitting shapes for sport courts are analyzed and discussed. PMID:24922246

  13. Side-illuminating LED luminaires with accurate projection in high uniformity and high optical utilization factor for large-area field illumination.

    PubMed

    Lo, Yi-Chien; Cai, Jhih-You; Tasi, Ming-Shiou; Tasi, Zheng-Yu; Sun, Ching-Cherng

    2014-03-10

    A novel light luminaire is proposed and experimentally analyzed, which accurately projects light into a large rectangular area to achieve uniform illumination and a high optical utilization factor at the target. Side-illuminating luminaires for large-scale illuminated area are typically set with an elevated tilt angle to enlarge the illuminated area. However, the light pattern is bent thereby reducing the uniformity and optical utilization factor at the target. In this paper, we propose an efficient and useful approach with a rotationally symmetric projection lens that is trimmed to adjust the bending effect and to form a rectangular illumination light pattern on the ground. The design concept is demonstrated and verified. Several potential applications such as highly uniform illumination with fitting shapes for sport courts are analyzed and discussed. PMID:24800294

  14. What's the Point of a Raster ? Advantages of 3D Point Cloud Processing over Raster Based Methods for Accurate Geomorphic Analysis of High Resolution Topography.

    NASA Astrophysics Data System (ADS)

    Lague, D.

    2014-12-01

    High Resolution Topographic (HRT) datasets are predominantly stored and analyzed as 2D raster grids of elevations (i.e., Digital Elevation Models). Raster grid processing is common in GIS software and benefits from a large library of fast algorithms dedicated to geometrical analysis, drainage network computation and topographic change measurement. Yet, all instruments or methods currently generating HRT datasets (e.g., ALS, TLS, SFM, stereo satellite imagery) output natively 3D unstructured point clouds that are (i) non-regularly sampled, (ii) incomplete (e.g., submerged parts of river channels are rarely measured), and (iii) include 3D elements (e.g., vegetation, vertical features such as river banks or cliffs) that cannot be accurately described in a DEM. Interpolating the raw point cloud onto a 2D grid generally results in a loss of position accuracy, spatial resolution and in more or less controlled interpolation. Here I demonstrate how studying earth surface topography and processes directly on native 3D point cloud datasets offers several advantages over raster based methods: point cloud methods preserve the accuracy of the original data, can better handle the evaluation of uncertainty associated to topographic change measurements and are more suitable to study vegetation characteristics and steep features of the landscape. In this presentation, I will illustrate and compare Point Cloud based and Raster based workflows with various examples involving ALS, TLS and SFM for the analysis of bank erosion processes in bedrock and alluvial rivers, rockfall statistics (including rockfall volume estimate directly from point clouds) and the interaction of vegetation/hydraulics and sedimentation in salt marshes. These workflows use 2 recently published algorithms for point cloud classification (CANUPO) and point cloud comparison (M3C2) now implemented in the open source software CloudCompare.

  15. Visualization of High Resolution Spatial Mass Spectrometric Data during Acquisition

    SciTech Connect

    Thomas, Mathew; Heath, Brandi S.; Laskin, Julia; Li, Dongsheng; Liu, Ellen C.; Hui, Katrina L.; Kuprat, Andrew P.; Kleese van Dam, Kerstin; Carson, James P.

    2012-08-28

    Mass Spectrometric Imaging (IMS) allows the generation of 2D ion density maps that help visualize molecules present in sections of tissues and cells. The combination of spatial and mass resolution results in large and complex data sets that require powerful and efficient analysis and interpretation. In this paper, a graphical user interface (GUI) that can visualize the large data during data acquisition itself is presented. The program also has the ability to perform processing and analysis of the dataset. The various functions of the GUI including visualization of mass spectra, generation of 2D maps for selected species, manipulation of the heat maps, and peak identification are also presented.

  16. High-resolution full-field spatial coherence gated optical tomography using monochromatic light source

    NASA Astrophysics Data System (ADS)

    Srivastava, Vishal; Nandy, Sreyankar; Singh Mehta, Dalip

    2013-09-01

    We demonstrate dispersion free, high-resolution full-field spatial coherence gated optical tomography using spatially incoherent monochromatic light source. Spatial coherence properties of light source were synthesized by means of combining a static diffuser and vibrating multi mode fiber bundle. Due to low spatial coherence of light source, the axial resolution of the system was achieved similar to that of conventional optical coherence tomography which utilizes low temporal coherence. Experimental results of fringe visibility versus optical path difference are presented for varying numerical apertures objective lenses. High resolution optically sectioned images of multilayer onion skin, and red blood cells are presented.

  17. High Spatial Resolution Observations of Two Young Protostars in the R Corona Australis Region

    NASA Astrophysics Data System (ADS)

    Groppi, Christopher E.; Hunter, Todd R.; Blundell, Raymond; Sandell, Göran

    2007-11-01

    We present multiwavelength, high spatial resolution imaging of the IRS 7 region in the R Corona Australis molecular cloud. Our observations include 1.1 mm continuum and HCO+ J=3-->2 images from the Submillimeter Array (SMA), 12CO J=3-->2 outflow maps from the DesertStar heterodyne array receiver on the Heinrich Hertz Telescope (HHT), 450 and 850 μm continuum images from SCUBA, and archival Spitzer IRAC and MIPS 24 μm images. The accurate astrometry of the IRAC images allow us to identify IRS 7 with the centimeter source VLA 10W (IRS 7A) and the X-ray source XW. The SMA 1.1 mm image reveals two compact continuum sources that are also distinguishable at 450 μm. SMA 1 coincides with X-ray source CXOU J190156.4-365728 and VLA centimeter source 10E (IRS 7B) and is seen in the IRAC and MIPS images. SMA 2 has no infrared counterpart but coincides with centimeter source VLA 9. Spectral energy distributions constructed from SMA, SCUBA, and Spitzer data yield bolometric temperatures of 83 K for SMA 1 and <=70 K for SMA 2. These temperatures along with the submillimeter to total luminosity ratios indicate that SMA 2 is a Class 0 protostar, while SMA 1 is a Class 0/Class I transitional object (L=17+/-6 Lsolar). The 12CO J=3-->2 outflow map shows one major and possibly several smaller outflows centered on the IRS 7 region, with masses and energetics consistent with previous work. We identify the Class 0 source SMA 2/VLA 9 as the main driver of this outflow. The complex and clumpy spatial and velocity distribution of the HCO+ J=3-->2 emission is not consistent with either bulk rotation, or any known molecular outflow activity.

  18. Low Voltage High Precision Spatial Light ModulatorsFinal Report

    SciTech Connect

    Papavasiliou, A P

    2005-02-09

    The goal of this project was to make LLNL a leader in Spatial Light Modulators (SLMs) by developing the technology that will be needed by the next generation of SLMs. We would use new lower voltage actuators and bond those actuators directly to controlling circuitry to break the fundamental limitations that constrain current SLM technology. This three-year project was underfunded in the first year and not funded in the second year. With the funding that was available, we produced actuators and designs for the controlling circuitry that would have been integrated in the second year. Spatial light modulators (SLMs) are arrays of tiny movable mirrors that modulate the wave-fronts of light. SLMs can correct aberrations in incoming light for adaptive optics or modulate light for beam control, optical communication and particle manipulation. MicroElectroMechanical Systems (MEMS) is a technology that utilizes the microfabrication tools developed by the semiconductor industry to fabricate a wide variety of tiny machines. The first generation of MEMS SLMs have improved the functionality of SLMs while drastically reducing per pixel cost making arrays on the order of 1000 pixels readily available. These MEMS SLMs however are limited by the nature of their designs to be very difficult to scale above 1000 pixels and have very limited positioning accuracy. By co-locating the MEMS mirrors with CMOS electronics, we will increase the scalability and positioning accuracy. To do this we will have to make substantial advances in SLM actuator design, and fabrication.

  19. How Well Can the NARCCAP Models Capture the High-Resolution Spatial Patterns of the Precipitation Field in the Western United States

    NASA Astrophysics Data System (ADS)

    Chu, W.; Sellars, S.; Gao, X.; Sorooshian, S.

    2011-12-01

    In the western U.S. where complex terrains present, accurate information on high-resolution spatial distribution of precipitation is critical to many important issues, such as flood/landslide warning, reservoir operation, and water system planning. For instance, due to the highly heterogeneous spatial distribution of precipitation in California, vast manmade infrastructures, such as the Central Valley Project and California Water Project, have been built to resolve the mismatch between where precipitation falls and where water is consumed. In the face of climate variability, prudent planning and proper operation of these water infrastructures are essential to the region's sustainability. The success of planning requires accurate precipitation projection from climate models. In particular, two questions: 1) how well climate models can simulate the precipitation spatial patterns, and 2) how these patterns will change will climate, are of great interest to many researchers and managers in environmental planning and management. Our study are designed to answer these questions based on the dynamical downscaling results from the NARRCAP program and our recent findings on the high-resolution spatial patterns of the daily precipitation field in the western U.S. Using EOF analysis on the U.S. daily precipitation product of Climate Prediction Center (CPC), we revealed that there exists dominant spatial patterns in the precipitation field over the western United States. The spatial patterns are consistent at different spatial resolutions and persistent over decades. Therefore, we intend to evaluate how well climate models can capture these spatial patterns of observed precipitation in this region. EOF analysis is applied to precipitation outputs from NARRCAP, and the derived spatial patterns are compared with those of observation for the same time period. The similarity between model simulations and observation is quantified with mutual information based on Shannon entropy

  20. The Geospectral Camera: a Compact and Geometrically Precise Hyperspectral and High Spatial Resolution Imager

    NASA Astrophysics Data System (ADS)

    Delauré, B.; Michiels, B.; Biesemans, J.; Livens, S.; Van Achteren, T.

    2013-04-01

    Small unmanned aerial vehicles are increasingly being employed for environmental monitoring at local scale, which drives the demand for compact and lightweight spectral imagers. This paper describes the geospectral camera, which is a novel compact imager concept. The camera is built around an innovative detector which has two sensor elements on a single chip and therefore offers the functionality of two cameras within the volume of a single one. The two sensor elements allow the camera to derive both spectral information as well as geometric information (high spatial resolution imagery and a digital surface model) of the scene of interest. A first geospectral camera prototype has been developed. It uses a linear variable optical filter which is installed in front of one of the two sensors of the MEDUSA CMOS imager chip. A accompanying software approach has been developed which exploits the simultaneous information of the two sensors in order to extract an accurate spectral image product. This method has been functionally demonstrated by applying it on image data acquired during an airborne acquisition.

  1. Object-Based Arctic Sea Ice Feature Extraction through High Spatial Resolution Aerial photos

    NASA Astrophysics Data System (ADS)

    Miao, X.; Xie, H.

    2015-12-01

    High resolution aerial photographs used to detect and classify sea ice features can provide accurate physical parameters to refine, validate, and improve climate models. However, manually delineating sea ice features, such as melt ponds, submerged ice, water, ice/snow, and pressure ridges, is time-consuming and labor-intensive. An object-based classification algorithm is developed to automatically extract sea ice features efficiently from aerial photographs taken during the Chinese National Arctic Research Expedition in summer 2010 (CHINARE 2010) in the MIZ near the Alaska coast. The algorithm includes four steps: (1) the image segmentation groups the neighboring pixels into objects based on the similarity of spectral and textural information; (2) the random forest classifier distinguishes four general classes: water, general submerged ice (GSI, including melt ponds and submerged ice), shadow, and ice/snow; (3) the polygon neighbor analysis separates melt ponds and submerged ice based on spatial relationship; and (4) pressure ridge features are extracted from shadow based on local illumination geometry. The producer's accuracy of 90.8% and user's accuracy of 91.8% are achieved for melt pond detection, and shadow shows a user's accuracy of 88.9% and producer's accuracies of 91.4%. Finally, pond density, pond fraction, ice floes, mean ice concentration, average ridge height, ridge profile, and ridge frequency are extracted from batch processing of aerial photos, and their uncertainties are estimated.

  2. Advanced Extraction of Spatial Information from High Resolution Satellite Data

    NASA Astrophysics Data System (ADS)

    Pour, T.; Burian, J.; Miřijovský, J.

    2016-06-01

    In this paper authors processed five satellite image of five different Middle-European cities taken by five different sensors. The aim of the paper was to find methods and approaches leading to evaluation and spatial data extraction from areas of interest. For this reason, data were firstly pre-processed using image fusion, mosaicking and segmentation processes. Results going into the next step were two polygon layers; first one representing single objects and the second one representing city blocks. In the second step, polygon layers were classified and exported into Esri shapefile format. Classification was partly hierarchical expert based and partly based on the tool SEaTH used for separability distinction and thresholding. Final results along with visual previews were attached to the original thesis. Results are evaluated visually and statistically in the last part of the paper. In the discussion author described difficulties of working with data of large size, taken by different sensors and different also thematically.

  3. Accurate Finite Difference Algorithms

    NASA Technical Reports Server (NTRS)

    Goodrich, John W.

    1996-01-01

    Two families of finite difference algorithms for computational aeroacoustics are presented and compared. All of the algorithms are single step explicit methods, they have the same order of accuracy in both space and time, with examples up to eleventh order, and they have multidimensional extensions. One of the algorithm families has spectral like high resolution. Propagation with high order and high resolution algorithms can produce accurate results after O(10(exp 6)) periods of propagation with eight grid points per wavelength.

  4. HIGH SPATIAL-RESOLUTION IMAGING OF TE INCLUSIONS IN CZT MATERIAL.

    SciTech Connect

    CAMARDA, G.S.; BOLOTNIKOV, A.E.; CARINI, G.A.; CUI, Y.; KOHMAN, K.T.; LI, L.; JAMES, R.B.

    2006-08-13

    We present new results from our studies of defects in current single-crystal CdZnTe material. Our previous measurements, carried out on thin ({approx}1 mm) and long (>12 mm) CZT detectors, indicated that small (1-20 {micro}m) Te inclusions can significantly degrade the device's energy resolution and detection efficiency. We are conducting detailed studies of the effects of Te inclusions by employing different characterization techniques with better spatial resolution, such as quantitative fluorescence mapping, X-ray micro-diffraction, and TEM. Also, IR microscopy and gamma-mapping with pulse-shape analysis with higher spatial resolution generated more accurate results in the areas surrounding the micro-defects (Te inclusions). Our results reveal how the performance of CdZnTe detectors is influenced by Te inclusions, such as their spatial distribution, concentration, and size. We also discuss a model of charge transport through areas populated with Te inclusions.

  5. High resolution autofocus for spatial temporal biomedical research

    NASA Astrophysics Data System (ADS)

    Li, Sihong; Cui, Xiaodong; Huang, Wei

    2013-11-01

    Maintaining focus has been a critical but challenging issue in optical microscopy, particularly for microscopic imaging systems currently used in biomedical research. During live cell imaging, environmental temperature fluctuations and other factors contribute to the unavoidable focus drift. For single molecular imaging and super resolution, focus drift can be significant even over short durations. The current commercial and experimental solutions are either optically complicated, expensive, or with limited axial resolution. Here, we present a simple autofocus solution based on low cost solid state laser and imaging sensor. By improving the optical train design and using real-time data analysis, improvement in axial resolution by approximately two orders of magnitudes over the focal depth of microscope objectives can be achieved. This solution has been tested for prolonged live cell imaging for fast ramping up in environmental chamber temperature and large daily swing in room temperature. In addition, this system can be used to spatial-temporally measure the surface for three-dimensional cell culture and tissue engineering, with flexibility that exceeds commercially available systems.

  6. Device for high spatial resolution chemical analysis of a sample and method of high spatial resolution chemical analysis

    DOEpatents

    Van Berkel, Gary J.

    2015-10-06

    A system and method for analyzing a chemical composition of a specimen are described. The system can include at least one pin; a sampling device configured to contact a liquid with a specimen on the at least one pin to form a testing solution; and a stepper mechanism configured to move the at least one pin and the sampling device relative to one another. The system can also include an analytical instrument for determining a chemical composition of the specimen from the testing solution. In particular, the systems and methods described herein enable chemical analysis of specimens, such as tissue, to be evaluated in a manner that the spatial-resolution is limited by the size of the pins used to obtain tissue samples, not the size of the sampling device used to solubilize the samples coupled to the pins.

  7. High spatial resolution laser cavity extinction and laser-induced incandescence in low-soot-producing flames

    NASA Astrophysics Data System (ADS)

    Tian, B.; Gao, Y.; Balusamy, S.; Hochgreb, S.

    2015-09-01

    Accurate measurement techniques for in situ determination of soot are necessary to understand and monitor the process of soot particle production. One of these techniques is line-of-sight extinction, which is a fast, low-cost and quantitative method to investigate the soot volume fraction in flames. However, the extinction-based technique suffers from relatively high measurement uncertainty due to low signal-to-noise ratio, as the single-pass attenuation of the laser beam intensity is often insufficient. Multi-pass techniques can increase the sensitivity, but may suffer from low spatial resolution. To overcome this problem, we have developed a high spatial resolution laser cavity extinction technique to measure the soot volume fraction from low-soot-producing flames. A laser beam cavity is realised by placing two partially reflective concave mirrors on either side of the laminar diffusion flame under investigation. This configuration makes the beam convergent inside the cavity, allowing a spatial resolution within 200 μm, whilst increasing the absorption by an order of magnitude. Three different hydrocarbon fuels are tested: methane, propane and ethylene. The measurements of soot distribution across the flame show good agreement with results using laser-induced incandescence (LII) in the range from around 20 ppb to 15 ppm.

  8. Spatial Mapping of Protein Abundances in the Mouse Brain by Voxelation Integrated with High-Throughput Liquid Chromatography - Mass Spectrometry

    SciTech Connect

    Petyuk, Vladislav A; Qian, Weijun; Chin, Mark H; Wang, Haixing H; Livesay, Eric A; Monroe, Matthew E; Adkins, Joshua N; Jaitly, Navdeep; Anderson, David J; Camp, David G; Smith, Desmond J; Smith, Richard D

    2007-01-25

    Temporally and spatially resolved mapping of protein abundance patterns within the mammalian brain is of significant interest for understanding brain function and molecular etiologies of neurodegenerative diseases; however, such imaging efforts have been greatly challenged by complexity of the proteome, throughput and sensitivity of applied analytical methodologies, and accurate quantitation of protein abundances across the brain. Here, we describe a methodology for comprehensive spatial proteome mapping that addresses these challenges by employing voxelation integrated with automated microscale sample processing, high-throughput LC system coupled with high resolution Fourier transform ion cyclotron mass spectrometer and a “universal” stable isotope labeled reference sample approach for robust quantitation. We applied this methodology as a proof-of-concept trial for the analysis of protein distribution within a single coronal slice of a C57BL/6J mouse brain. For relative quantitation of the protein abundances across the slice, an 18O-isotopically labeled reference sample, derived from a whole control coronal slice from another mouse, was spiked into each voxel sample and stable isotopic intensity ratios were used to obtain measures of relative protein abundances. In total, we generated maps of protein abundance patterns for 1,028 proteins. The significant agreement of the protein distributions with previously reported data supports the validity of this methodology, which opens new opportunities for studying the spatial brain proteome and its dynamics during the course of disease progression and other important biological and associated health aspects in a discovery-driven fashion.

  9. Elemental Analysis of Glass Optical Fibres with High Spatial Resolution.

    NASA Astrophysics Data System (ADS)

    Pugh, Andrew

    Available from UMI in association with The British Library. The properties of glass optical fibres are very strongly dependent on the elemental concentration profiles of the fibre cores. Core dopants such as germanium define the core refractive index, which in turn defines the manner in which the light is transmitted through the fibre. Erbium in fibre cores can facilitate the operation of fibre lasers and aluminium in turn can control the erbium distribution. The aim of the project described in this thesis was to measure the elemental concentration profiles in a variety of fibre cores using X-ray microanalysis in an electron microscope. Conventional X-ray microanalysis of bulk samples has an analytical resolution in the order of a micron. With monomode optical fibre cores having cores typically three microns in diameter the resolution of the conventional technique is plainly inadequate. An experimental technique has been developed for the preparation of thin cross-sectional samples of glass optical fibres. Application of this technique has facilitated the preparation and analysis of thin film specimens with an average thickness of 400 microns. This approach has allowed analysis to be performed with an effective spatial resolution of 100-300 nm. The technique has been applied to the determination of germanium concentration in Raman fibres, to the investigation of erbium confinement in erbium doped fibres and to the investigation of inter-ionic diffusion in semiconductor doped fibres. It has been shown that the germanium, and hence refractive index, profile of germanium doped fibres is not changed by the process of fibre drawing. Evidence has been gathered supporting the theory of erbium confinement by aluminium and an important degree of elemental diffusion has been shown to take place during the drawing of semiconductor doped fibres. In addition an experimental technique has been developed for the preparation of thin cross-sectional samples of glass optical fibres.

  10. Development of an Objective High Spatial Resolution Soil Moisture Index

    NASA Astrophysics Data System (ADS)

    Zavodsky, B.; Case, J.; White, K.; Bell, J. R.

    2015-12-01

    Drought detection, analysis, and mitigation has become a key challenge for a diverse set of decision makers, including but not limited to operational weather forecasters, climatologists, agricultural interests, and water resource management. One tool that is heavily used is the United States Drought Monitor (USDM), which is derived from a complex blend of objective data and subjective analysis on a state-by-state basis using a variety of modeled and observed precipitation, soil moisture, hydrologic, and vegetation and crop health data. The NASA Short-term Prediction Research and Transition (SPoRT) Center currently runs a real-time configuration of the Noah land surface model (LSM) within the NASA Land Information System (LIS) framework. The LIS-Noah is run at 3-km resolution for local numerical weather prediction (NWP) and situational awareness applications at select NOAA/National Weather Service (NWS) forecast offices over the Continental U.S. (CONUS). To enhance the practicality of the LIS-Noah output for drought monitoring and assessing flood potential, a 30+-year soil moisture climatology has been developed in an attempt to place near real-time soil moisture values in historical context at county- and/or watershed-scale resolutions. This LIS-Noah soil moisture climatology and accompanying anomalies is intended to complement the current suite of operational products, such as the North American Land Data Assimilation System phase 2 (NLDAS-2), which are generated on a coarser-resolution grid that may not capture localized, yet important soil moisture features. Daily soil moisture histograms are used to identify the real-time soil moisture percentiles at each grid point according to the county or watershed in which the grid point resides. Spatial plots are then produced that map the percentiles as proxies to the different USDM categories. This presentation will highlight recent developments of this gridded, objective soil moisture index, comparison to subjective

  11. HIGH SPATIAL RESOLUTION IMAGING OF THERMAL EMISSION FROM DEBRIS DISKS

    SciTech Connect

    Moerchen, Margaret M.; Telesco, Charles M.; Packham, Christopher

    2010-11-10

    We have obtained subarcsecond mid-IR images of a sample of debris disks within 100 pc. For our sample of 19 A-type debris disk candidates chosen for their IR excess, we have resolved, for the first time, five sources plus the previously resolved disk around HD 141569. Two other sources in our sample have been ruled out as debris disks since the time of sample selection. Three of the six resolved sources have inferred radii of 1-4 AU (HD 38678, HD 71155, and HD 181869), and one source has an inferred radius {approx}10-30 AU (HD 141569). Among the resolved sources with detections of excess IR emission, HD 71155 appears to be comparable in size (r {approx} 2 AU) to the solar system's asteroid belt, thus joining {zeta} Lep (HD 38678, reported previously) to comprise the only two resolved sources of that class. Two additional sources (HD 95418 and HD 139006) show spatial extents that imply disk radii of {approx}1-3 AU, although the excess IR fluxes are not formally detected with better than 2{sigma} significance. For the unresolved sources, the upper limits on the maximum radii of mid-IR disk emission are in the range {approx}1-20 AU, four of which are comparable in radius to the asteroid belt. We have compared the global color temperatures of the dust to that expected for the dust in radiative equilibrium at the distances corresponding to the observed sizes or limits on the sizes. In most cases, the temperatures estimated via these two methods are comparable, and therefore, we see a generally consistent picture of the inferred morphology and the global mid-IR emission. Finally, while our sample size is not statistically significant, we note that the older sources (>200 Myr) host much warmer dust (T {approx}> 400 K) than younger sources (in the tens of Myr).

  12. High spatial resolution image restoration from subpixel-shifted hyperspectral images

    NASA Astrophysics Data System (ADS)

    Su, Lijuan; Zhou, Shubo; Yuan, Yan

    2015-01-01

    The spatial resolution of hyperspectral imaging systems is constrained by a spatial-spectral resolution tradeoff and current technique limitations. However, spatial resolution is a critical feature for applications that require high spatial resolution and utilization of details. We present a method of restoring high-resolution (HR) images from a set of low-resolution (LR) hyperspectral data cubes with subpixel shifts across different bands. A new observation model is introduced to demonstrate LR hyperspectral images at different bands and an HR image that covers all these bands. A regularized super-resolution (SR) algorithm is then implemented to solve the problem. Experiments of the proposed algorithm and existing SR algorithms are performed and the results are evaluated. The results demonstrate the feasibility of the proposed SR method. Moreover, the image fusion results also demonstrate that the restored image is suitable for enhancing the spatial resolution of entire hyperspectral data cubes.

  13. Application of a cell microarray chip system for accurate, highly sensitive, and rapid diagnosis for malaria in Uganda.

    PubMed

    Yatsushiro, Shouki; Yamamoto, Takeki; Yamamura, Shohei; Abe, Kaori; Obana, Eriko; Nogami, Takahiro; Hayashi, Takuya; Sesei, Takashi; Oka, Hiroaki; Okello-Onen, Joseph; Odongo-Aginya, Emmanuel I; Alai, Mary Auma; Olia, Alex; Anywar, Dennis; Sakurai, Miki; Palacpac, Nirianne Mq; Mita, Toshihiro; Horii, Toshihiro; Baba, Yoshinobu; Kataoka, Masatoshi

    2016-01-01

    Accurate, sensitive, rapid, and easy operative diagnosis is necessary to prevent the spread of malaria. A cell microarray chip system including a push column for the recovery of erythrocytes and a fluorescence detector was employed for malaria diagnosis in Uganda. The chip with 20,944 microchambers (105 μm width and 50 μm depth) was made of polystyrene. For the analysis, 6 μl of whole blood was employed, and leukocytes were practically removed by filtration through SiO2-nano-fibers in a column. Regular formation of an erythrocyte monolayer in each microchamber was observed following dispersion of an erythrocyte suspension in a nuclear staining dye, SYTO 21, onto the chip surface and washing. About 500,000 erythrocytes were analyzed in a total of 4675 microchambers, and malaria parasite-infected erythrocytes could be detected in 5 min by using the fluorescence detector. The percentage of infected erythrocytes in each of 41 patients was determined. Accurate and quantitative detection of the parasites could be performed. A good correlation between examinations via optical microscopy and by our chip system was demonstrated over the parasitemia range of 0.0039-2.3438% by linear regression analysis (R(2) = 0.9945). Thus, we showed the potential of this chip system for the diagnosis of malaria. PMID:27445125

  14. Application of a cell microarray chip system for accurate, highly sensitive, and rapid diagnosis for malaria in Uganda

    PubMed Central

    Yatsushiro, Shouki; Yamamoto, Takeki; Yamamura, Shohei; Abe, Kaori; Obana, Eriko; Nogami, Takahiro; Hayashi, Takuya; Sesei, Takashi; Oka, Hiroaki; Okello-Onen, Joseph; Odongo-Aginya, Emmanuel I.; Alai, Mary Auma; Olia, Alex; Anywar, Dennis; Sakurai, Miki; Palacpac, Nirianne MQ; Mita, Toshihiro; Horii, Toshihiro; Baba, Yoshinobu; Kataoka, Masatoshi

    2016-01-01

    Accurate, sensitive, rapid, and easy operative diagnosis is necessary to prevent the spread of malaria. A cell microarray chip system including a push column for the recovery of erythrocytes and a fluorescence detector was employed for malaria diagnosis in Uganda. The chip with 20,944 microchambers (105 μm width and 50 μm depth) was made of polystyrene. For the analysis, 6 μl of whole blood was employed, and leukocytes were practically removed by filtration through SiO2-nano-fibers in a column. Regular formation of an erythrocyte monolayer in each microchamber was observed following dispersion of an erythrocyte suspension in a nuclear staining dye, SYTO 21, onto the chip surface and washing. About 500,000 erythrocytes were analyzed in a total of 4675 microchambers, and malaria parasite-infected erythrocytes could be detected in 5 min by using the fluorescence detector. The percentage of infected erythrocytes in each of 41 patients was determined. Accurate and quantitative detection of the parasites could be performed. A good correlation between examinations via optical microscopy and by our chip system was demonstrated over the parasitemia range of 0.0039–2.3438% by linear regression analysis (R2 = 0.9945). Thus, we showed the potential of this chip system for the diagnosis of malaria. PMID:27445125

  15. Automated road network extraction from high spatial resolution multi-spectral imagery

    NASA Astrophysics Data System (ADS)

    Zhang, Qiaoping

    For the last three decades, the Geomatics Engineering and Computer Science communities have considered automated road network extraction from remotely-sensed imagery to be a challenging and important research topic. The main objective of this research is to investigate the theory and methodology of automated feature extraction for image-based road database creation, refinement or updating, and to develop a series of algorithms for road network extraction from high resolution multi-spectral imagery. The proposed framework for road network extraction from multi-spectral imagery begins with an image segmentation using the k-means algorithm. This step mainly concerns the exploitation of the spectral information for feature extraction. The road cluster is automatically identified using a fuzzy classifier based on a set of predefined road surface membership functions. These membership functions are established based on the general spectral signature of road pavement materials and the corresponding normalized digital numbers on each multi-spectral band. Shape descriptors of the Angular Texture Signature are defined and used to reduce the misclassifications between roads and other spectrally similar objects (e.g., crop fields, parking lots, and buildings). An iterative and localized Radon transform is developed for the extraction of road centerlines from the classified images. The purpose of the transform is to accurately and completely detect the road centerlines. It is able to find short, long, and even curvilinear lines. The input image is partitioned into a set of subset images called road component images. An iterative Radon transform is locally applied to each road component image. At each iteration, road centerline segments are detected based on an accurate estimation of the line parameters and line widths. Three localization approaches are implemented and compared using qualitative and quantitative methods. Finally, the road centerline segments are grouped into a

  16. Melt-rock reaction in the asthenospheric mantle: Perspectives from high-order accurate numerical simulations in 2D and 3D

    NASA Astrophysics Data System (ADS)

    Tirupathi, S.; Schiemenz, A. R.; Liang, Y.; Parmentier, E.; Hesthaven, J.

    2013-12-01

    The style and mode of melt migration in the mantle are important to the interpretation of basalts erupted on the surface. Both grain-scale diffuse porous flow and channelized melt migration have been proposed. To better understand the mechanisms and consequences of melt migration in a heterogeneous mantle, we have undertaken a numerical study of reactive dissolution in an upwelling and viscously deformable mantle where solubility of pyroxene increases upwards. Our setup is similar to that described in [1], except we use a larger domain size in 2D and 3D and a new numerical method. To enable efficient simulations in 3D through parallel computing, we developed a high-order accurate numerical method for the magma dynamics problem using discontinuous Galerkin methods and constructed the problem using the numerical library deal.II [2]. Linear stability analyses of the reactive dissolution problem reveal three dynamically distinct regimes [3] and the simulations reported in this study were run in the stable regime and the unstable wave regime where small perturbations in porosity grows periodically. The wave regime is more relevant to melt migration beneath the mid-ocean ridges but computationally more challenging. Extending the 2D simulations in the stable regime in [1] to 3D using various combinations of sustained perturbations in porosity at the base of the upwelling column (which may result from a viened mantle), we show the geometry and distribution of dunite channel and high-porosity melt channels are highly correlated with inflow perturbation through superposition. Strong nonlinear interactions among compaction, dissolution, and upwelling give rise to porosity waves and high-porosity melt channels in the wave regime. These compaction-dissolution waves have well organized but time-dependent structures in the lower part of the simulation domain. High-porosity melt channels nucleate along nodal lines of the porosity waves, growing downwards. The wavelength scales

  17. High density spectral beam combination with spatial chirp precompensation.

    PubMed

    Cheung, Eric C; Ho, James G; McComb, Timothy S; Palese, Stephen

    2011-10-10

    A method for spectral combination of lasers with extremely high spectral density is introduced, enabling greater than 80% and theoretically approaching 100% spectral density utilization with no degradation in beam quality. Experiments demonstrating the utility of our method are described, cumulating in a demonstration of a compact, packaged laser with photonic-crystal-fiber-rod amplifiers at 0.5-MW peak power and 0.15-nm wavelength spacing. Our method is potentially scalable to many 100's of channels within the gain bandwidth of high average power or peak power rare earth doped fiber lasers at any wavelength in a compact footprint and uses only reflective optics and gratings.

  18. Atmospheric Correction Prototype Algorithm for High Spatial Resolution Multispectral Earth Observing Imaging Systems

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary

    2006-01-01

    This viewgraph presentation reviews the creation of a prototype algorithm for atmospheric correction using high spatial resolution earth observing imaging systems. The objective of the work was to evaluate accuracy of a prototype algorithm that uses satellite-derived atmospheric products to generate scene reflectance maps for high spatial resolution (HSR) systems. This presentation focused on preliminary results of only the satellite-based atmospheric correction algorithm.

  19. High-resolution observations of the spatial and velocity distribution of cometary hydrogen

    NASA Technical Reports Server (NTRS)

    Brown, Michael E.; Spinrad, Hyron

    1992-01-01

    We have obtained high velocity and spatial resolution long-slit H alpha spectra of comets Austin (1989c1) and Levy (1990c). Spectra of both comets clearly show the existence of a low velocity thermalized component of hydrogen gas. The amount of slow hydrogen is estimated for comet Austin. The Levy spectrum shows an unusual high-velocity spatially-confined blob of hydrogen emission of unknown origin.

  20. Accurate dipole moment curve and non-adiabatic effects on the high resolution spectroscopic properties of the LiH molecule

    NASA Astrophysics Data System (ADS)

    Diniz, Leonardo G.; Kirnosov, Nikita; Alijah, Alexander; Mohallem, José R.; Adamowicz, Ludwik

    2016-04-01

    A very accurate dipole moment curve (DMC) for the ground X1Σ+ electronic state of the 7LiH molecule is reported. It is calculated with the use of all-particle explicitly correlated Gaussian functions with shifted centers. The DMC - the most accurate to our knowledge - and the corresponding highly accurate potential energy curve are used to calculate the transition energies, the transition dipole moments, and the Einstein coefficients for the rovibrational transitions with ΔJ = - 1 and Δv ⩽ 5 . The importance of the non-adiabatic effects in determining these properties is evaluated using the model of a vibrational R-dependent effective reduced mass in the rovibrational calculations introduced earlier (Diniz et al., 2015). The results of the present calculations are used to assess the quality of the two complete linelists of 7LiH available in the literature.

  1. Role of high-order aberrations in senescent changes in spatial vision

    SciTech Connect

    Elliot, S; Choi, S S; Doble, N; Hardy, J L; Evans, J W; Werner, J S

    2009-01-06

    The contributions of optical and neural factors to age-related losses in spatial vision are not fully understood. We used closed-loop adaptive optics to test the visual benefit of correcting monochromatic high-order aberrations (HOAs) on spatial vision for observers ranging in age from 18-81 years. Contrast sensitivity was measured monocularly using a two-alternative forced choice (2AFC) procedure for sinusoidal gratings over 6 mm and 3 mm pupil diameters. Visual acuity was measured using a spatial 4AFC procedure. Over a 6 mm pupil, young observers showed a large benefit of AO at high spatial frequencies, whereas older observers exhibited the greatest benefit at middle spatial frequencies, plus a significantly larger increase in visual acuity. When age-related miosis is controlled, young and old observers exhibited a similar benefit of AO for spatial vision. An increase in HOAs cannot account for the complete senescent decline in spatial vision. These results may indicate a larger role of additional optical factors when the impact of HOAs is removed, but also lend support for the importance of neural factors in age-related changes in spatial vision.

  2. Limited rotational and rovibrational line lists computed with highly accurate quartic force fields and ab initio dipole surfaces.

    PubMed

    Fortenberry, Ryan C; Huang, Xinchuan; Schwenke, David W; Lee, Timothy J

    2014-02-01

    In this work, computational procedures are employed to compute the rotational and rovibrational spectra and line lists for H2O, CO2, and SO2. Building on the established use of quartic force fields, MP2 and CCSD(T) Dipole Moment Surfaces (DMSs) are computed for each system of study in order to produce line intensities as well as the transition energies. The computed results exhibit a clear correlation to reference data available in the HITRAN database. Additionally, even though CCSD(T) DMSs produce more accurate intensities as compared to experiment, the use of MP2 DMSs results in reliable line lists that are still comparable to experiment. The use of the less computationally costly MP2 method is beneficial in the study of larger systems where use of CCSD(T) would be more costly. PMID:23692860

  3. TIMP2•IGFBP7 biomarker panel accurately predicts acute kidney injury in high-risk surgical patients

    PubMed Central

    Gunnerson, Kyle J.; Shaw, Andrew D.; Chawla, Lakhmir S.; Bihorac, Azra; Al-Khafaji, Ali; Kashani, Kianoush; Lissauer, Matthew; Shi, Jing; Walker, Michael G.; Kellum, John A.

    2016-01-01

    BACKGROUND Acute kidney injury (AKI) is an important complication in surgical patients. Existing biomarkers and clinical prediction models underestimate the risk for developing AKI. We recently reported data from two trials of 728 and 408 critically ill adult patients in whom urinary TIMP2•IGFBP7 (NephroCheck, Astute Medical) was used to identify patients at risk of developing AKI. Here we report a preplanned analysis of surgical patients from both trials to assess whether urinary tissue inhibitor of metalloproteinase 2 (TIMP-2) and insulin-like growth factor–binding protein 7 (IGFBP7) accurately identify surgical patients at risk of developing AKI. STUDY DESIGN We enrolled adult surgical patients at risk for AKI who were admitted to one of 39 intensive care units across Europe and North America. The primary end point was moderate-severe AKI (equivalent to KDIGO [Kidney Disease Improving Global Outcomes] stages 2–3) within 12 hours of enrollment. Biomarker performance was assessed using the area under the receiver operating characteristic curve, integrated discrimination improvement, and category-free net reclassification improvement. RESULTS A total of 375 patients were included in the final analysis of whom 35 (9%) developed moderate-severe AKI within 12 hours. The area under the receiver operating characteristic curve for [TIMP-2]•[IGFBP7] alone was 0.84 (95% confidence interval, 0.76–0.90; p < 0.0001). Biomarker performance was robust in sensitivity analysis across predefined subgroups (urgency and type of surgery). CONCLUSION For postoperative surgical intensive care unit patients, a single urinary TIMP2•IGFBP7 test accurately identified patients at risk for developing AKI within the ensuing 12 hours and its inclusion in clinical risk prediction models significantly enhances their performance. LEVEL OF EVIDENCE Prognostic study, level I. PMID:26816218

  4. High spatial resolution 10 micron imaging of IRC + 10216

    NASA Technical Reports Server (NTRS)

    Bloemhof, E. E.; Danchi, W. C.; Townes, C. H.; Mclaren, R. A.

    1988-01-01

    Precise high-resolution 10-micron images of the carbon star IRC + 10216 have been obtained with a scanned linear array. The low noise and high dynamic range of these images permit deconvolution of the telescope point-spread function, revealing the radial brightness distribution of the circumstellar dust shell: approximate reflection symmetry is found in west-east scans, with a distinct division into two components of diameter about 0.40 and 2.2 arcsec. It is shown that this morphology is consistent with published interferometric data that had cast doubt upon an earlier, idealized two-component model. The observed brightness distribution implies that the circumstellar dust density may deviate substantially from the 1/r squared radial dependence expected for spherically symmetric outflow with constant velocity and constant rate of mass loss.

  5. High spatial frequency periodic structures induced on metal surface by femtosecond laser pulses.

    PubMed

    Yao, Jian-Wu; Zhang, Cheng-Yun; Liu, Hai-Ying; Dai, Qiao-Feng; Wu, Li-Jun; Lan, Sheng; Gopal, Achanta Venu; Trofimov, Vyacheslav A; Lysak, Tatiana M

    2012-01-16

    The high spatial frequency periodic structures induced on metal surface by femtosecond laser pulses was investigated experimentally and numerically. It is suggested that the redistribution of the electric field on metal surface caused by the initially formed low spatial frequency periodic structures plays a crucial role in the creation of high spatial frequency periodic structures. The field intensity which is initially localized in the grooves becomes concentrated on the ridges in between the grooves when the depth of the grooves exceeds a critical value, leading to the ablation of the ridges in between the grooves and the formation of high spatial frequency periodic structures. The proposed formation process is supported by both the numerical simulations based on the finite-difference time-domain technique and the experimental results obtained on some metals such as stainless steel and nickel.

  6. Geocoding large population-level administrative datasets at highly resolved spatial scales

    PubMed Central

    Edwards, Sharon E.; Strauss, Benjamin; Miranda, Marie Lynn

    2014-01-01

    Using geographic information systems to link administrative databases with demographic, social, and environmental data allows researchers to use spatial approaches to explore relationships between exposures and health. Traditionally, spatial analysis in public health has focused on the county, zip code, or tract level because of limitations to geocoding at highly resolved scales. Using 2005 birth and death data from North Carolina, we examine our ability to geocode population-level datasets at three spatial resolutions – zip code, street, and parcel. We achieve high geocoding rates at all three resolutions, with statewide street geocoding rates of 88.0% for births and 93.2% for deaths. We observe differences in geocoding rates across demographics and health outcomes, with lower geocoding rates in disadvantaged populations and the most dramatic differences occurring across the urban-rural spectrum. Our results suggest highly resolved spatial data architectures for population-level datasets are viable through geocoding individual street addresses. We recommend routinely geocoding administrative datasets to the highest spatial resolution feasible, allowing public health researchers to choose the spatial resolution used in analysis based on an understanding of the spatial dimensions of the health outcomes and exposures being investigated. Such research, however, must acknowledge how disparate geocoding success across subpopulations may affect findings. PMID:25383017

  7. The intelligence of observation: improving high school students' spatial ability by means of intervention unit

    NASA Astrophysics Data System (ADS)

    Patkin, Dorit; Dayan, Ester

    2013-03-01

    This case study of one class versus a control group focused on the impact of an intervention unit, which is not part of the regular curriculum, on the improvement of spatial ability of high school students (forty-six 12th-graders, aged 17-18, both boys and girls) in general as well as from a gender perspective. The study explored three sub-abilities: mental rotation (MR), spatial visualization (VS) and spatial orientation (SO). Findings indicated that the spatial orientation of the experimental group students had considerably improved. The findings also illustrated a significant gender-based advantage in favour of the boys in some of the spatial abilities even before the implementation of the intervention unit. The hypothesis relating to the reduction of the gender differences was not corroborated.

  8. High Spatial Resolution Analysis of Carbonates by In Situ Excimer Laser Ablation MC-ICP-MS

    NASA Astrophysics Data System (ADS)

    Shuttleworth, S.; Lloyd, N.; Douthitt, C.

    2012-12-01

    Speleothems are important climate archives. The time resolution of the paleochlimate proxies depends on the growth rates and the precision limitation of the analytical instrumentation [1]. As a consequence, for speleothems, better analytical precision combined with better spatial resolution will always be the goal, driven by a need to probe the timing and duration of climate events [1]. The Thermo Scientific NEPTUNE Plus with Jet Interface option offers unparalleled MC-ICP-MS sensitivity for heavy elements. An ion yield of >3 % has previously been reported for uranium solutions introduced by desolvating nebulizer[2]. For laser ablation Hf, the Jet Interface with N2 addition significantly improved sensitivity, which allowed precise and accurate 176Hf/177Hf ratios to be calculated using a spot size of just 25 μm diameter [3]. A Thermo Scientific NEPTUNE Plus with Jet Interface option was coupled with a Photon Machines excimer laser ablation system. This system features a short pulse width (4ns) 193 nm excimer laser and the HELEX 2 volume sample cell. The 193nm wavelength has been shown to reduce the particle size distribution of the aerosol produced by the laser ablation process [4] and this in turn has been shown to help minimize the effects of fractionation by ensuring that particles are in a size range so as to avoid incomplete vaporization and ionization in the plasma [5]. In this work we investigate U-Th dating of carbonates. Accurate LA U-Th isotope measurements on carbonates with U concentrations smaller than 1 μg/g are difficult due to small ion beams [1]. Hoffman et. al. [1] noted individual LA U-Th ratio precisions of about 2% (2 sigma) on a 134 ka sample with 134 μg/g U concentration. In this work we apply a combination of the high sampling efficiency two volume cell plus mixed gas plasmas to further enhance the capability. [1] Hoffman, D.L., et al. (2009). Chemical Geology. 259 253-261 [2] Bouman, C., et al. (2009). Geochim. Cosmochim. Acta. 73

  9. Highly Accurate Quantum-Chemical Calculations for the Interstellar Molecules C_3 and l-C_3H^+

    NASA Astrophysics Data System (ADS)

    Botschwina, Peter; Schröder, Benjamin; Stein, Christopher; Sebald, Peter; Oswald, Rainer

    2014-06-01

    Composite potential energy surfaces with coupled-cluster contributions up to CCSDTQP were constructed for C_3 and l-C_3H^+ and used in the calculation of spectroscopic properties. The use of very large AO basis sets and the consideration of higher-order correlation beyond CCSD(T) is of utmost importance for C_3 in order to arrive at quantitative spectroscopic data. The first detection of l-C_3H^+ in the interstellar medium was reported by Pety et al., who attributed 9 radio lines observed in the horsehead photodissociation region to that species. That assignment was questioned by the recent theoretical work of Huang et al. However, our more accurate calculations are well in support of the original assignment. The calculated ground-state rotational constant is B_0 = 11248 MHz, only 0.03% off from the radio astronomical value of 11244.9512±0.0015 MHz. The ratio of centrifugal distortion constants D_0(exp.)/D_e(theor.) of 1.8 is quite large, but reasonable in comparison with C_3O and C_3. J. Pety, P. Gratier, V. Guzmán, E. Roueff, M. Gerin et al., Astron. Astrophys. 2012, A68, 1-8. X. Huang, R. C. Fortenberry, T. J. Lee, Astrophys. J. Lett. 2013, 768:L25, 1-5. P. Botschwina, R. Oswald, J. Chem. Phys. 2008, 129, 044305

  10. Full house of fears: evidence that people high in attachment anxiety are more accurate in detecting deceit.

    PubMed

    Ein-Dor, Tsachi; Perry, Adi

    2014-04-01

    Lying is deep-rooted in our nature, as over 90% of all people lie. Laypeople, however, do only slightly better than chance when detecting lies and deceptions. Recently, attachment anxiety was linked with people's hypervigilance toward threat-related cues. Accordingly, we tested whether attachment anxiety predicts people's ability to detect deceit and to play poker-a game that is based on players' ability to detect cheating. In Study 1, 202 participants watched a series of interpersonal interactions that comprised subtle clues to the honesty or dishonesty of the speakers. In Study 2, 58 participants watched clips in which such cues were absent. Participants were asked to decide whether the main characters were honest or dishonest. In Study 3, we asked 35 semiprofessional poker players to participate in a poker tournament, and then we predicted the amount of money won during the game. Results indicated that attachment anxiety, but not other types of anxiety, predicted more accurate detection of deceitful statements (Studies 1-2) and a greater amount of money won during a game of poker (Study 3). Results are discussed in relation to the possible adaptive functions of certain personality characteristics, such as attachment anxiety, often viewed as undesirable. PMID:23437786

  11. An Accurate Timing Alignment Method with Time-to-Digital Converter Linearity Calibration for High-Resolution TOF PET

    PubMed Central

    Li, Hongdi; Wang, Chao; An, Shaohui; Lu, Xingyu; Dong, Yun; Liu, Shitao; Baghaei, Hossain; Zhang, Yuxuan; Ramirez, Rocio; Wong, Wai-Hoi

    2015-01-01

    Accurate PET system timing alignment minimizes the coincidence time window and therefore reduces random events and improves image quality. It is also critical for time-of-flight (TOF) image reconstruction. Here, we use a thin annular cylinder (shell) phantom filled with a radioactive source and located axially and centrally in a PET camera for the timing alignment of a TOF PET system. This timing alignment method involves measuring the time differences between the selected coincidence detector pairs, calibrating the differential and integral nonlinearity of the time-to-digital converter (TDC) with the same raw data and deriving the intrinsic time biases for each detector using an iterative algorithm. The raw time bias for each detector is downloaded to the front-end electronics and the residual fine time bias can be applied during the TOF list-mode reconstruction. Our results showed that a timing alignment accuracy of better than ±25 ps can be achieved, and a preliminary timing resolution of 473 ps (full width at half maximum) was measured in our prototype TOF PET/CT system. PMID:26543243

  12. Spatial light modulators for high-brightness projection displays.

    PubMed

    Takizawa, K; Fujii, T; Kikuchi, H; Fujikake, H; Kawakita, M; Hirano, Y; Sato, F

    1999-09-10

    We fabricated polymer-dispersed liquid-crystal light valves (PDLCLV's) consisting of a 30-microm-thick hydrogenated amorphous-silicon film and a 10-microm-thick polymer-dispersed liquid-crystal (PDLC) film composed of nematic liquid-crystal (LC) microdroplets surrounded by polymer. The device can modulate high-power reading light, because the PDLC becomes transparent or opalescent independent of the polarization state of the reading light when either sufficient or no writing light is incident on the PDLCLV. This device has a limiting resolution of 50 lp/mm (lp indicates line pairs), a reading light efficiency of 60%, a ratio of intensity of light incident on the PDLC layer to intensity of light radiated from the layer, and an extinction ratio of 130:1. The optically addressed video projection system with three PDLCLV's, LC panels of 1048 x 480 pixels as input image sources, a 1-kW Xe lamp, and a schlieren optical system projected television (TV) pictures of 600 and 450 TV lines in the horizontal and the vertical directions on a screen with a diagonal length of 100 in. The total output flux of this system was 1500 lm. PMID:18324076

  13. Combining high temporal and high spatial resolution thermal infrared datasets to detect volcanic precursors

    NASA Astrophysics Data System (ADS)

    Reath, K. A.; Dehn, J.; Ramsey, M. S.

    2013-12-01

    Most volcanoes produce some level of precursory activity prior to an eruption. In certain cases, the precursors can be interpreted to make forecasts about the time and magnitude of the impending eruption. Furthermore, subtle changes in this activity can be used to determine the style of an eruption at volcanoes known for differing eruption types. This study focuses on the effectiveness of using thermal infrared (TIR) spaceborne sensors to track volcanic precursors from thermal changes at the summit of volcanoes using data from both the ASTER and AVHRR sensors by focusing on the Kamchatka (Russia) region. At Bezymianny volcano, a clear increase in activity commonly occurs before an eruption, which has allowed predictions to be made months ahead of time. In other cases, such as the Tolbachik eruption in 2012, no precursors were detected before the large scale effusive eruption. However, most volcanoes do not fall into these extremes, as is the case with Kliuchevskoi volcano. Three large eruptions (e.g., 2005, 2007, 2009) have occurred at Kliuchevskoi in the past decade. Before each of these eruptions, AVHRR and ASTER detected thermal anomalies (pixels with radiant energy significantly above the background). High temporal but low spatial resolution (i.e., hours; 1 km) AVHRR data are ideal for detecting high energy events occurring over short time periods. In contrast, high spatial but low temporal resolution (i.e., days to weeks; 90 m) ASTER data enables the detection of much lower levels of activity. These smaller thermal anomalies are more commonly associated with the longer time scale pre-eruptive phase at Kliuchevskoi. The problem occurs where attempting to detect patterns in these anomalies over time. Only volcanic activity that produces a large amount of radiant energy can be seen with the relatively poor spatial resolution of AVHRR, and ASTER will commonly miss shorter duration activity. In this study, we use ASTER data to track low-level anomalies months prior

  14. High-speed limnology: using advanced sensors to investigate spatial variability in biogeochemistry and hydrology.

    PubMed

    Crawford, John T; Loken, Luke C; Casson, Nora J; Smith, Colin; Stone, Amanda G; Winslow, Luke A

    2015-01-01

    Advanced sensor technology is widely used in aquatic monitoring and research. Most applications focus on temporal variability, whereas spatial variability has been challenging to document. We assess the capability of water chemistry sensors embedded in a high-speed water intake system to document spatial variability. This new sensor platform continuously samples surface water at a range of speeds (0 to >45 km h(-1)) resulting in high-density, mesoscale spatial data. These novel observations reveal previously unknown variability in physical, chemical, and biological factors in streams, rivers, and lakes. By combining multiple sensors into one platform, we were able to detect terrestrial-aquatic hydrologic connections in a small dystrophic lake, to infer the role of main-channel vs backwater nutrient processing in a large river and to detect sharp chemical changes across aquatic ecosystem boundaries in a stream/lake complex. Spatial sensor data were verified in our examples by comparing with standard lab-based measurements of selected variables. Spatial fDOM data showed strong correlation with wet chemistry measurements of DOC, and optical NO3 concentrations were highly correlated with lab-based measurements. High-frequency spatial data similar to our examples could be used to further understand aquatic biogeochemical fluxes, ecological patterns, and ecosystem processes, and will both inform and benefit from fixed-site data.

  15. The Role of Low and High Spatial Frequencies in Exogenous Attention to Biologically Salient Stimuli

    PubMed Central

    Carretié, Luis; Ríos, Marcos; Periáñez, José A.; Kessel, Dominique; Álvarez-Linera, Juan

    2012-01-01

    Exogenous attention can be understood as an adaptive tool that permits the detection and processing of biologically salient events even when the individual is engaged in a resource-consuming task. Indirect data suggest that the spatial frequency of stimulation may be a crucial element in this process. Behavioral and neural data (both functional and structural) were analyzed for 36 participants engaged in a digit categorization task in which distracters were presented. Distracters were biologically salient or anodyne images, and had three spatial frequency formats: intact, low spatial frequencies only, and high spatial frequencies only. Behavior confirmed enhanced exogenous attention to biologically salient distracters. The activity in the right and left intraparietal sulci and the right middle frontal gyrus was associated with this behavioral pattern and was greater in response to salient than to neutral distracters, the three areas presenting strong correlations to each other. Importantly, the enhanced response of this network to biologically salient distracters with respect to neutral distracters relied on low spatial frequencies to a significantly greater extent than on high spatial frequencies. Structural analyses suggested the involvement of internal capsule, superior longitudinal fasciculus and corpus callosum in this network. Results confirm that exogenous attention is preferentially captured by biologically salient information, and suggest that the architecture and function underlying this process are low spatial frequency-biased. PMID:22590649

  16. Spatial variability of the Black Sea surface temperature from high resolution modeling and satellite measurements

    NASA Astrophysics Data System (ADS)

    Mizyuk, Artem; Senderov, Maxim; Korotaev, Gennady

    2016-04-01

    Large number of numerical ocean models were implemented for the Black Sea basin during last two decades. They reproduce rather similar structure of synoptical variability of the circulation. Since 00-s numerical studies of the mesoscale structure are carried out using high performance computing (HPC). With the growing capacity of computing resources it is now possible to reconstruct the Black Sea currents with spatial resolution of several hundreds meters. However, how realistic these results can be? In the proposed study an attempt is made to understand which spatial scales are reproduced by ocean model in the Black Sea. Simulations are made using parallel version of NEMO (Nucleus for European Modelling of the Ocean). A two regional configurations with spatial resolutions 5 km and 2.5 km are described. Comparison of the SST from simulations with two spatial resolutions shows rather qualitative difference of the spatial structures. Results of high resolution simulation are compared also with satellite observations and observation-based products from Copernicus using spatial correlation and spectral analysis. Spatial scales of correlations functions for simulated and observed SST are rather close and differs much from satellite SST reanalysis. Evolution of spectral density for modelled SST and reanalysis showed agreed time periods of small scales intensification. Using of the spectral analysis for satellite measurements is complicated due to gaps. The research leading to this results has received funding from Russian Science Foundation (project № 15-17-20020)

  17. Interfacial shear stress measurement using high spatial resolution multiphase PIV

    NASA Astrophysics Data System (ADS)

    André, Matthieu A.; Bardet, Philippe M.

    2015-06-01

    In multiphase flows, form drag and viscous shear stress transfer momentum between phases. For numerous environmental and man-made flows, it is of primary importance to predict this transfer at a liquid-gas interface. In its general expression, interfacial shear stress involves local velocity gradients as well as surface velocity, curvature, and surface tension gradients. It is therefore a challenging quantity to measure experimentally or compute numerically. In fact, no experimental work to date has been able to directly resolve all the terms contributing to the shear stress in the case of curved and moving surfaces. In an attempt to fully resolve the interface shear stress when surface tension gradients are negligible, high-resolution particle image velocimetry (PIV) data are acquired simultaneously on both sides of a water-air interface. The flow consists of a well-conditioned uniform and homogeneous water jet discharging in quiescent air, which exhibits two-dimensional surface waves as a result of a shear layer instability below the surface. PIV provides velocity fields in both phases, while planar laser-induced fluorescence is used to track the interface and obtain its curvature. To compute the interfacial shear stress from the data, several processing schemes are proposed and compared, using liquid and/or gas phase data. Vorticity at the surface, which relates to the shear stress through the dynamic boundary condition at the surface, is also computed and provides additional strategies for estimating the shear. The various schemes are in agreement within the experimental uncertainties, validating the methodology for experimentally resolving this demanding quantity.

  18. Surface-Enhanced Raman Spectroscopy with High Spatial Resolution

    SciTech Connect

    Huser, T R

    2003-02-04

    The identification of individual molecules and the determination of how these interact with their local environment are critical steps toward a better understanding of complex organic systems. Optical detection techniques have always played a key role in the nondestructive and noninvasive analysis of complex materials. Until recently, however, optical microscopy has lacked the sensitivity to study processes on the molecular scale. This has changed with the recent development of new schemes that limit the optical detection volume, and the advent of new, highly quantum-efficient photon detectors. These inventions have enabled researchers to optically probe biomolecular processes at the single molecule level by observing the fluorescence of specific marker molecules. The requirement to specifically label biomolecules and the fact, that fluorescence emission is prone to photodecomposition of the marker molecules, however, have limited this approach to a few, well-characterized case studies. Raman scattering, is one of few optical techniques that can identify atomic species and in addition determine their chemical bonds by observing their distinct vibrational fingerprints; but it is orders of magnitude weaker than fluorescence. In this project, we have developed new optical probes that allow for the non-destructive characterization and identification of organic and inorganic matter at the single molecule level by surface-enhanced Raman spectroscopy. Our approach combines confocal Raman microscopy with surface-enhanced Raman spectroscopy (SERS) generated by coating scanning probe microscope (SPM) tips with thin (30-40 nm) gold and silver films. The scanning SERS probe generates an image of the physical structure of a sample together with detailed chemical information about its composition. In a complementary approach, we have also used gold or silver nanoparticles to generate SER spectra from single molecules adsorbed to these particles. This project has led to the

  19. Low insertion loss highly mode-selective spatial multiplexers using multi-plane light conversion

    NASA Astrophysics Data System (ADS)

    Morizur, Jean-François; Barré, Nicolas; Pinel, Olivier; Lenglé, Kevin; Garcia, Lionel; Jaffres, Lionel; Jian, Pu; Labroille, Guillaume

    2016-02-01

    Multi-Plane Light Conversion enables novel beam shaping devices, including spatial multiplexers. After a presentation of the achievable performances of these spatial multiplexers, which can combine 10 spatial modes with cross-talk below -22 dB and insertion loss below 4 dB, we review the performances of Multi-Plane Light Con-version in multiple application cases. These application cases include mode-multiplexed optical amplification, high-power beam shaping and combining and LAN fiber capacity upgrade.

  20. Highly accurate isotope composition measurements by a miniature laser ablation mass spectrometer designed for in situ investigations on planetary surfaces

    NASA Astrophysics Data System (ADS)

    Riedo, A.; Meyer, S.; Heredia, B.; Neuland, M. B.; Bieler, A.; Tulej, M.; Leya, I.; Iakovleva, M.; Mezger, K.; Wurz, P.

    2013-10-01

    An experimental procedure for precise and accurate measurements of isotope abundances by a miniature laser ablation mass spectrometer for space research is described. The measurements were conducted on different untreated NIST standards and galena samples by applying pulsed UV laser radiation (266 nm, 3 ns and 20 Hz) for ablation, atomisation, and ionisation of the sample material. Mass spectra of released ions are measured by a reflectron-type time-of-flight mass analyser. A computer controlled performance optimiser was used to operate the system at maximum ion transmission and mass resolution. At optimal experimental conditions, the best relative accuracy and precision achieved for Pb isotope compositions are at the per mill level and were obtained in a range of applied laser irradiances and a defined number of accumulated spectra. A similar relative accuracy and precision was achieved in the study of Pb isotope compositions in terrestrial galena samples. The results for the galena samples are similar to those obtained with a thermal ionisation mass spectrometer (TIMS). The studies of the isotope composition of other elements yielded relative accuracy and precision at the per mill level too, with characteristic instrument parameters for each element. The relative accuracy and precision of the measurements is degrading with lower element/isotope concentration in a sample. For the elements with abundances below 100 ppm these values drop to the percent level. Depending on the isotopic abundances of Pb in minerals, 207Pb/206Pb ages with accuracy in the range of tens of millions of years can be achieved.

  1. High temporal and high spatial resolution MR angiography (4D-MRA).

    PubMed

    Hadizadeh, D R; Marx, C; Gieseke, J; Schild, H H; Willinek, W A

    2014-09-01

    In the first decade of the twenty-first century, whole-body magnetic resonance scanners with high field strengths (and thus potentially better signal-to-noise ratios) were developed. At the same time, parallel imaging and "echo-sharing" techniques were refined to allow for increasingly high spatial and temporal resolution in dynamic magnetic resonance angiography ("time-resolved" = TR-MRA). This technological progress facilitated tracking the passage of intra-venously administered contrast agent boluses as well as the acquisition of volume data sets at high image refresh rates ("4D-MRA"). This opened doors for many new applications in non-invasive vascular imaging, including simultaneous anatomic and functional analysis of many vascular pathologies including arterio-venous malformations. Different methods were established to acquire 4D-MRA using various strategies to acquire k-space trajectories over time in order to optimize imaging according to clinical needs. These include "keyhole"-based techniques (e. g. 4D-TRAK), TRICKS - both with and without projection - and HYPR-reconstruction, TREAT, and TWIST. Some of these techniques were first introduced in the 1980 s and 1990 s, were later enhanced and modified, and finally implemented in the products of major vendors. In the last decade, a large number of studies on the clinical applications of TR-MRA was published. This manuscript provides an overview of the development of TR-MRA methods and the 4D-MRA techniques as they are currently used in the diagnosis, treatment and follow-up of vascular diseases in various parts of the body. PMID:24955647

  2. An obesogenic bias in women's spatial memory for high calorie snack food.

    PubMed

    Allan, K; Allan, J L

    2013-08-01

    To help maintain a positive energy balance in ancestral human habitats, evolution appears to have designed a functional bias in spatial memory that enhances our ability to remember the location of high-calorie foodstuffs. Here, we investigated whether this functional bias has obesogenic consequences for individuals living in a modern urban environment. Spatial memory, dietary intentions, and perceived desirability, for high-calorie snacks and lower-calorie fruits and vegetables were measured using a computer-based task in 41 women (age: 18-35, body mass index: 18.5-30.0). Using multiple linear regression, we analyzed whether enhanced spatial memory for high-calorie snacks versus fruits and vegetables predicted BMI, controlling for dietary intention strength and perceived food desirability. We observed that enhanced spatial memory for high-calorie snacks (both independently, and relative to that for fruits and vegetables), significantly predicted higher BMI. The evolved function of high-calorie bias in human spatial memory, to promote positive energy balance, would therefore appear to be intact. But our data reveal that this function may contribute to higher, less healthy BMI in individuals in whom the memory bias is most marked. Our findings reveal a novel cognitive marker of vulnerability to weight gain that, once the proximal mechanisms are understood, may offer new possibilities for weight control interventions.

  3. The distribution of highly stable millimeter-wave signals over different optical fiber links with accurate phase-correction

    NASA Astrophysics Data System (ADS)

    Liu, Zhangweiyi; Wang, Xiaocheng; Sun, Dongning; Dong, Yi; Hu, Weisheng

    2015-08-01

    We have demonstrated an optical generation of highly stable millimeter-wave signal distribution system, which transfers a 300GHz signal to two remote ends over different optical fiber links for signal stability comparison. The transmission delay variations of each fiber link caused by temperature and mechanical perturbations are compensated by high-precise phase-correction system. The residual phase noise between two remote end signals is detected by dual-heterodyne phase error transfer and reaches -46dBc/Hz at 1 Hz frequency offset from the carrier. The relative instability is 8×10-17 at 1000s averaging time.

  4. An accurate online calibration system based on combined clamp-shape coil for high voltage electronic current transformers

    NASA Astrophysics Data System (ADS)

    Li, Zhen-hua; Li, Hong-bin; Zhang, Zhi

    2013-07-01

    Electronic transformers are widely used in power systems because of their wide bandwidth and good transient performance. However, as an emerging technology, the failure rate of electronic transformers is higher than that of traditional transformers. As a result, the calibration period needs to be shortened. Traditional calibration methods require the power of transmission line be cut off, which results in complicated operation and power off loss. This paper proposes an online calibration system which can calibrate electronic current transformers without power off. In this work, the high accuracy standard current transformer and online operation method are the key techniques. Based on the clamp-shape iron-core coil and clamp-shape air-core coil, a combined clamp-shape coil is designed as the standard current transformer. By analyzing the output characteristics of the two coils, the combined clamp-shape coil can achieve verification of the accuracy. So the accuracy of the online calibration system can be guaranteed. Moreover, by employing the earth potential working method and using two insulating rods to connect the combined clamp-shape coil to the high voltage bus, the operation becomes simple and safe. Tests in China National Center for High Voltage Measurement and field experiments show that the proposed system has a high accuracy of up to 0.05 class.

  5. An accurate online calibration system based on combined clamp-shape coil for high voltage electronic current transformers

    SciTech Connect

    Li, Zhen-hua; Li, Hong-bin; Zhang, Zhi

    2013-07-15

    Electronic transformers are widely used in power systems because of their wide bandwidth and good transient performance. However, as an emerging technology, the failure rate of electronic transformers is higher than that of traditional transformers. As a result, the calibration period needs to be shortened. Traditional calibration methods require the power of transmission line be cut off, which results in complicated operation and power off loss. This paper proposes an online calibration system which can calibrate electronic current transformers without power off. In this work, the high accuracy standard current transformer and online operation method are the key techniques. Based on the clamp-shape iron-core coil and clamp-shape air-core coil, a combined clamp-shape coil is designed as the standard current transformer. By analyzing the output characteristics of the two coils, the combined clamp-shape coil can achieve verification of the accuracy. So the accuracy of the online calibration system can be guaranteed. Moreover, by employing the earth potential working method and using two insulating rods to connect the combined clamp-shape coil to the high voltage bus, the operation becomes simple and safe. Tests in China National Center for High Voltage Measurement and field experiments show that the proposed system has a high accuracy of up to 0.05 class.

  6. Accurate high-throughput identification of parallel G-quadruplex topology by a new tetraaryl-substituted imidazole.

    PubMed

    Hu, Ming-Hao; Chen, Shuo-Bin; Wang, Yu-Qing; Zeng, You-Mei; Ou, Tian-Miao; Li, Ding; Gu, Lian-Quan; Huang, Zhi-Shu; Tan, Jia-Heng

    2016-09-15

    G-quadruplex nucleic acids are four-stranded DNA or RNA secondary structures that are formed in guanine-rich sequences. These structures exhibit extensive structural polymorphism and play a pivotal role in the control of a variety of cellular processes. To date, diverse approaches for high-throughput identification of G-quadruplex structures have been successfully developed, but high-throughput methods for further characterization of their topologies are still lacking. In this study, we report a new tetra-arylimidazole probe psIZCM-1, which was found to display significant and distinctive changes in both the absorption and the fluorescence spectra in the presence of parallel G-quadruplexes but show insignificant changes upon interactions with anti-parallel G-quadruplexes or other non-quadruplex oligonucleotides. In view of this dual-output feature, we used psIZCM-1 to identify the parallel G-quadruplexes from a large set of 314 oligonucleotides (including 300 G-quadruplex-forming oligonucleotides and 14 non-quadruplex oligonucleotides) via a microplate reader and accordingly established a high-throughput method for the characterization of parallel G-quadruplex topologies. The accuracy of this method was greater than 95%, which was much higher than that of the commercial probe NMM. To make the approach more practical, we further combined psIZCM-1 with another G-quadruplex probe IZCM-7 to realize the high-throughput classification of parallel, anti-parallel G-quadruplexes and non-quadruplex structures.

  7. An accurate online calibration system based on combined clamp-shape coil for high voltage electronic current transformers.

    PubMed

    Li, Zhen-hua; Li, Hong-bin; Zhang, Zhi

    2013-07-01

    Electronic transformers are widely used in power systems because of their wide bandwidth and good transient performance. However, as an emerging technology, the failure rate of electronic transformers is higher than that of traditional transformers. As a result, the calibration period needs to be shortened. Traditional calibration methods require the power of transmission line be cut off, which results in complicated operation and power off loss. This paper proposes an online calibration system which can calibrate electronic current transformers without power off. In this work, the high accuracy standard current transformer and online operation method are the key techniques. Based on the clamp-shape iron-core coil and clamp-shape air-core coil, a combined clamp-shape coil is designed as the standard current transformer. By analyzing the output characteristics of the two coils, the combined clamp-shape coil can achieve verification of the accuracy. So the accuracy of the online calibration system can be guaranteed. Moreover, by employing the earth potential working method and using two insulating rods to connect the combined clamp-shape coil to the high voltage bus, the operation becomes simple and safe. Tests in China National Center for High Voltage Measurement and field experiments show that the proposed system has a high accuracy of up to 0.05 class. PMID:23902112

  8. Simulating the Cranfield geological carbon sequestration project with high-resolution static models and an accurate equation of state

    DOE PAGES

    Soltanian, Mohamad Reza; Amooie, Mohammad Amin; Cole, David R.; Graham, David E.; Hosseini, Seyyed Abolfazl; Hovorka, Susan; Pfiffner, Susan M.; Phelps, Tommy Joe; Moortgat, Joachim

    2016-10-11

    In this study, a field-scale carbon dioxide (CO2) injection pilot project was conducted as part of the Southeast Regional Sequestration Partnership (SECARB) at Cranfield, Mississippi. We present higher-order finite element simulations of the compositional two-phase CO2-brine flow and transport during the experiment. High- resolution static models of the formation geology in the Detailed Area Study (DAS) located below the oil- water contact (brine saturated) are used to capture the impact of connected flow paths on breakthrough times in two observation wells. Phase behavior is described by the cubic-plus-association (CPA) equation of state, which takes into account the polar nature ofmore » water molecules. Parameter studies are performed to investigate the importance of Fickian diffusion, permeability heterogeneity, relative permeabilities, and capillarity. Simulation results for the pressure response in the injection well and the CO2 breakthrough times at the observation wells show good agreement with the field data. For the high injection rates and short duration of the experiment, diffusion is relatively unimportant (high P clet numbers), while relative permeabilities have a profound impact on the pressure response. High-permeability pathways, created by fluvial deposits, strongly affect the CO2 transport and highlight the importance of properly characterizing the formation heterogeneity in future carbon sequestration projects.« less

  9. Neither Fair nor Accurate: Research-Based Reasons Why High-Stakes Tests Should Not Be Used to Evaluate Teachers

    ERIC Educational Resources Information Center

    Au, Wayne

    2011-01-01

    Current and former leaders of many major urban school districts, including Washington, D.C.'s Michelle Rhee and New Orleans' Paul Vallas, have sought to use tests to evaluate teachers. In fact, the use of high-stakes standardized tests to evaluate teacher performance in the manner of value-added measurement (VAM) has become one of the cornerstones…

  10. The Relationship between Utilization of Computer Games and Spatial Abilities among High School Students

    ERIC Educational Resources Information Center

    Motamedi, Vahid; Yaghoubi, Razeyah Mohagheghyan

    2015-01-01

    This study aimed at investigating the relationship between computer game use and spatial abilities among high school students. The sample consisted of 300 high school male students selected through multi-stage cluster sampling. Data gathering tools consisted of a researcher made questionnaire (to collect information on computer game usage) and the…

  11. High spatial resolution NO2 tropospheric slant columns retrieved from OMI spatial-zoom spectra using an earthshine reference

    NASA Astrophysics Data System (ADS)

    Anand, Jasdeep S.; Leigh, Roland J.; Monks, Paul S.

    2014-08-01

    Future satellite instruments measuring urban NO2 will need to have high spatio-temporal resolution in order to improve air quality model forecasts. However, the likely cost and data telemetry requirements for such instruments will be high with current techniques. In this work we propose a new retrieval algorithm for deriving tropospheric NO2 slant column densities (SCDs) by DOAS fitting an earthshine reference spectrum measured over the Pacific to account for stratospheric NO2, which would eliminate the need for a solar reference and simplify instrument and retrieval design. The retrieval is tested by fitting earthshine radiance spectra measured by the Ozone Measuring Instrument (OMI) during its spatial-zoom mode (nadir pixel size: 13 x 12 km2) and super-zoom mode (nadir pixel size: 13 x 3 km2) using a Pacific reference spectrum. Transects taken over urban areas showed that the retrieval appears to retrieve tropospheric NO2 SCDs with good agreement with the operational L2 DOMINO product over regions with high NOx emissions. The retrieval also appeared to supress across-track striping without the need for a posteriori correction and showed sensitivity to absorption due to sand and liquid water over deserts and oceans. Comparisons with operational-scale retrievals also showed improved SCD precision, if random noise is expected to be the cause of retrieval uncertainty.

  12. Development and operation of a high-throughput accurate-wavelength lens-based spectrometera)

    SciTech Connect

    Bell, Ronald E.

    2014-07-11

    A high-throughput spectrometer for the 400-820 nm wavelength range has been developed for charge exchange recombination spectroscopy or general spectroscopy. A large 2160 mm-1 grating is matched with fast f /1.8 200 mm lenses, which provide stigmatic imaging. A precision optical encoder measures the grating angle with an accuracy ≤ 0.075 arc seconds. A high quantum efficiency low-etaloning CCD detector allows operation at longer wavelengths. A patch panel allows input fibers to interface with interchangeable fiber holders that attach to a kinematic mount behind the entrance slit. The computer-controlled hardware allows automated control of wavelength, timing, f-number, automated data collection, and wavelength calibration.

  13. Accurate control of multishelled ZnO hollow microspheres for dye-sensitized solar cells with high efficiency.

    PubMed

    Dong, Zhenghong; Lai, Xiaoyong; Halpert, Jonathan E; Yang, Nailiang; Yi, Luoxin; Zhai, Jin; Wang, Dan; Tang, Zhiyong; Jiang, Lei

    2012-02-21

    A series of multishelled ZnO hollow microspheres with controlled shell number and inter-shell spacing have been successfully prepared by a simple carbonaceous microsphere templating method, whose large surface area and complex multishelled hollow structure enable them load sufficient dyes and multi-reflect the light for enhancing light harvesting and realize a high conversion efficiency of up to 5.6% when used in dye-sensitized solar cells. PMID:22266874

  14. High-Speed Incoming Infrared Target Detection by Fusion of Spatial and Temporal Detectors

    PubMed Central

    Kim, Sungho

    2015-01-01

    This paper presents a method for detecting high-speed incoming targets by the fusion of spatial and temporal detectors to achieve a high detection rate for an active protection system (APS). The incoming targets have different image velocities according to the target-camera geometry. Therefore, single-target detector-based approaches, such as a 1D temporal filter, 2D spatial filter and 3D matched filter, cannot provide a high detection rate with moderate false alarms. The target speed variation was analyzed according to the incoming angle and target velocity. The speed of the distant target at the firing time is almost stationary and increases slowly. The speed varying targets are detected stably by fusing the spatial and temporal filters. The stationary target detector is activated by an almost zero temporal contrast filter (TCF) and identifies targets using a spatial filter called the modified mean subtraction filter (M-MSF). A small motion (sub-pixel velocity) target detector is activated by a small TCF value and finds targets using the same spatial filter. A large motion (pixel-velocity) target detector works when the TCF value is high. The final target detection is terminated by fusing the three detectors based on the threat priority. The experimental results of the various target sequences show that the proposed fusion-based target detector produces the highest detection rate with an acceptable false alarm rate. PMID:25815448

  15. Two-photon imaging of spatially extended neuronal network dynamics with high temporal resolution

    PubMed Central

    Lillis, Kyle P.; Eng, Alfred; White, John A.; Mertz, Jerome

    2008-01-01

    We describe a simple two-photon fluorescence imaging strategy, called targeted path scanning (TPS), to monitor the dynamics of spatially extended neuronal networks with high spatiotemporal resolution. Our strategy combines the advantages of mirror-based scanning, minimized dead time, ease of implementation, and compatibility with high-resolution low-magnification objectives. To demonstrate the performance of TPS, we monitor the calcium dynamics distributed across an entire juvenile rat hippocampus (>1.5mm), at scan rates of 100Hz, with single cell resolution and single action potential sensitivity. Our strategy for fast, efficient two-photon microscopy over spatially extended regions provides a particularly attractive solution for monitoring neuronal population activity in thick tissue, without sacrificing the signal to noise ratio or high spatial resolution associated with standard two-photon microscopy. Finally, we provide the code to make our technique generally available. PMID:18539336

  16. High-Resolution Spatially Gridded Biomass Burning Emissions Inventory In Asia

    NASA Astrophysics Data System (ADS)

    Vadrevu, K. P.; Lau, W. K.; da Silva, A.; Justice, C. O.

    2012-12-01

    Biomass burning is long recognized an important source of greenhouse gas (GHG) emissions (CO2, CO, CH4, H2, CH3Cl, NO, HCN, CH3CN, COS, etc) and aerosols. In the Asian region, the current estimates of greenhouse gas emissions and aerosols from biomass burning are severely constrained by the lack of reliable statistics on fire distribution and frequency, and the lack of accurate estimates of area burned, fuel load, etc. As a part of NASA funded interdisciplinary research project entitled "Effects of biomass burning on water cycle and climate in the monsoon Asia", we initially developed a high resolution spatially gridded emissions inventory from the biomass burning for Indo-Ganges region and then extended the inventory to the entire Asia. Active fires from MODIS as well as high resolution LANDSAT data have been used to fine-tune the MODIS burnt area products for estimating the emissions. Locally based emission factors were used to refine the gaseous emissions. The resulting emissions data has been gridded at 5-minute intervals. We also compared our emission estimates with the other emission products such as Global Fire Assimilation System (GFAS), Quick fire emissions database (QFED) and Global Fire Emissions Database (GFED). Our results revealed significant vegetation fires from Myanmar, India, Indonesia, China, Laos, Thailand, Cambodia and Vietnam. These seven countries accounted for 92.4% of all vegetation fires in the Asian region. Satellite-based vegetation fire analysis showed the highest fire occurrence in the closed to open shrub land category, (19%) followed by closed to open, broadleaved evergreen-semi deciduous forest (16%), rain fed croplands (17%), post flooded or irrigated croplands (12%), mosaic cropland vegetation (11%), mosaic vegetation/cropland (10%). Emission contribution from agricultural fires was significant, however, showed discrepancies due to low confidence in burnt areas and lack of crop specific emission factors. Further, our results

  17. Efficient and accurate local single reference correlation methods for high-spin open-shell molecules using pair natural orbitals

    NASA Astrophysics Data System (ADS)

    Hansen, Andreas; Liakos, Dimitrios G.; Neese, Frank

    2011-12-01

    A production level implementation of the high-spin open-shell (spin unrestricted) single reference coupled pair, quadratic configuration interaction and coupled cluster methods with up to doubly excited determinants in the framework of the local pair natural orbital (LPNO) concept is reported. This work is an extension of the closed-shell LPNO methods developed earlier [F. Neese, F. Wennmohs, and A. Hansen, J. Chem. Phys. 130, 114108 (2009), 10.1063/1.3086717; F. Neese, A. Hansen, and D. G. Liakos, J. Chem. Phys. 131, 064103 (2009), 10.1063/1.3173827]. The internal space is spanned by localized orbitals, while the external space for each electron pair is represented by a truncated PNO expansion. The laborious integral transformation associated with the large number of PNOs becomes feasible through the extensive use of density fitting (resolution of the identity (RI)) techniques. Technical complications arising for the open-shell case and the use of quasi-restricted orbitals for the construction of the reference determinant are discussed in detail. As in the closed-shell case, only three cutoff parameters control the average number of PNOs per electron pair, the size of the significant pair list, and the number of contributing auxiliary basis functions per PNO. The chosen threshold default values ensure robustness and the results of the parent canonical methods are reproduced to high accuracy. Comprehensive numerical tests on absolute and relative energies as well as timings consistently show that the outstanding performance of the LPNO methods carries over to the open-shell case with minor modifications. Finally, hyperfine couplings calculated with the variational LPNO-CEPA/1 method, for which a well-defined expectation value type density exists, indicate the great potential of the LPNO approach for the efficient calculation of molecular properties.

  18. Encoding negative events under stress: high subjective arousal is related to accurate emotional memory despite misinformation exposure.

    PubMed

    Hoscheidt, Siobhan M; LaBar, Kevin S; Ryan, Lee; Jacobs, W Jake; Nadel, Lynn

    2014-07-01

    Stress at encoding affects memory processes, typically enhancing, or preserving, memory for emotional information. These effects have interesting implications for eyewitness accounts, which in real-world contexts typically involve encoding an aversive event under stressful conditions followed by potential exposure to misinformation. The present study investigated memory for a negative event encoded under stress and subsequent misinformation endorsement. Healthy young adults participated in a between-groups design with three experimental sessions conducted 48 h apart. Session one consisted of a psychosocial stress induction (or control task) followed by incidental encoding of a negative slideshow. During session two, participants were asked questions about the slideshow, during which a random subgroup was exposed to misinformation. Memory for the slideshow was tested during the third session. Assessment of memory accuracy across stress and no-stress groups revealed that stress induced just prior to encoding led to significantly better memory for the slideshow overall. The classic misinformation effect was also observed - participants exposed to misinformation were significantly more likely to endorse false information during memory testing. In the stress group, however, memory accuracy and misinformation effects were moderated by arousal experienced during encoding of the negative event. Misinformed-stress group participants who reported that the negative slideshow elicited high arousal during encoding were less likely to endorse misinformation for the most aversive phase of the story. Furthermore, these individuals showed better memory for components of the aversive slideshow phase that had been directly misinformed. Results from the current study provide evidence that stress and high subjective arousal elicited by a negative event act concomitantly during encoding to enhance emotional memory such that the most aversive aspects of the event are well remembered and

  19. High-order-harmonic generation driven by pulses with angular spatial chirp

    NASA Astrophysics Data System (ADS)

    Hernández-García, Carlos; Jaron-Becker, Agnieszka; Hickstein, Daniel D.; Becker, Andreas; Durfee, Charles G.

    2016-02-01

    We present and analyze a technique to drive high-order harmonics by laser pulses with an angular spatial chirp. Results of our numerical simulations show that each harmonic is emitted with an angular chirp which scales inversely with the harmonic order and leads to additional control of the spatial and temporal resolution of the spectrum. In particular, the use of angular chirp leads to separation of the harmonics in two dimensions where (i) high spectral resolution can be achieved and (ii) the temporal periodicity of the harmonic pulse trains can be controlled. We show that this technique does not require carrier-envelope-phase stabilization when using few-cycle laser pulses.

  20. A High-Resolution Spatially Explicit Monte-Carlo Simulation Approach to Commercial and Residential Electricity and Water Demand Modeling

    SciTech Connect

    Morton, April M; McManamay, Ryan A; Nagle, Nicholas N; Piburn, Jesse O; Stewart, Robert N; Surendran Nair, Sujithkumar

    2016-01-01

    Abstract As urban areas continue to grow and evolve in a world of increasing environmental awareness, the need for high resolution spatially explicit estimates for energy and water demand has become increasingly important. Though current modeling efforts mark significant progress in the effort to better understand the spatial distribution of energy and water consumption, many are provided at a course spatial resolution or rely on techniques which depend on detailed region-specific data sources that are not publicly available for many parts of the U.S. Furthermore, many existing methods do not account for errors in input data sources and may therefore not accurately reflect inherent uncertainties in model outputs. We propose an alternative and more flexible Monte-Carlo simulation approach to high-resolution residential and commercial electricity and water consumption modeling that relies primarily on publicly available data sources. The method s flexible data requirement and statistical framework ensure that the model is both applicable to a wide range of regions and reflective of uncertainties in model results. Key words: Energy Modeling, Water Modeling, Monte-Carlo Simulation, Uncertainty Quantification Acknowledgment This manuscript has been authored by employees of UT-Battelle, LLC, under contract DE-AC05-00OR22725 with the U.S. Department of Energy. Accordingly, the United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes.

  1. Parameterization of an interfacial force field for accurate representation of peptide adsorption free energy on high-density polyethylene.

    PubMed

    Abramyan, Tigran M; Snyder, James A; Yancey, Jeremy A; Thyparambil, Aby A; Wei, Yang; Stuart, Steven J; Latour, Robert A

    2015-01-01

    Interfacial force field (IFF) parameters for use with the CHARMM force field have been developed for interactions between peptides and high-density polyethylene (HDPE). Parameterization of the IFF was performed to achieve agreement between experimental and calculated adsorption free energies of small TGTG-X-GTGT host-guest peptides (T = threonine, G = glycine, and X = variable amino-acid residue) on HDPE, with ±0.5 kcal/mol agreement. This IFF parameter set consists of tuned nonbonded parameters (i.e., partial charges and Lennard-Jones parameters) for use with an in-house-modified CHARMM molecular dynamic program that enables the use of an independent set of force field parameters to control molecular behavior at a solid-liquid interface. The R correlation coefficient between the simulated and experimental peptide adsorption free energies increased from 0.00 for the standard CHARMM force field parameters to 0.88 for the tuned IFF parameters. Subsequent studies are planned to apply the tuned IFF parameter set for the simulation of protein adsorption behavior on an HDPE surface for comparison with experimental values of adsorbed protein orientation and conformation. PMID:25818122

  2. Three-dimensional digital holographic aperture synthesis for rapid and highly-accurate large-volume metrology

    NASA Astrophysics Data System (ADS)

    Crouch, Stephen; Kaylor, Brant M.; Barber, Zeb W.; Reibel, Randy R.

    2015-09-01

    Currently large volume, high accuracy three-dimensional (3D) metrology is dominated by laser trackers, which typically utilize a laser scanner and cooperative reflector to estimate points on a given surface. The dependency upon the placement of cooperative targets dramatically inhibits the speed at which metrology can be conducted. To increase speed, laser scanners or structured illumination systems can be used directly on the surface of interest. Both approaches are restricted in their axial and lateral resolution at longer stand-off distances due to the diffraction limit of the optics used. Holographic aperture ladar (HAL) and synthetic aperture ladar (SAL) can enhance the lateral resolution of an imaging system by synthesizing much larger apertures by digitally combining measurements from multiple smaller apertures. Both of these approaches only produce two-dimensional imagery and are therefore not suitable for large volume 3D metrology. We combined the SAL and HAL approaches to create a swept frequency digital holographic 3D imaging system that provides rapid measurement speed for surface coverage with unprecedented axial and lateral resolution at longer standoff ranges. The technique yields a "data cube" of Fourier domain data, which can be processed with a 3D Fourier transform to reveal a 3D estimate of the surface. In this paper, we provide the theoretical background for the technique and show experimental results based on an ultra-wideband frequency modulated continuous wave (FMCW) chirped heterodyne ranging system showing ~100 micron lateral and axial precisions at >2 m standoff distances.

  3. A simple method for the accurate determination of the Henry's law constant for highly sorptive, semivolatile organic compounds.

    PubMed

    Kim, Yong-Hyun; Kim, Ki-Hyun

    2016-01-01

    A novel technique is developed to determine the Henry's law constants (HLCs) of seven volatile fatty acids (VFAs) with significantly high solubility using a combined application of thermal desorber/gas chromatography/mass spectrometry (TD/GC/MS). In light of the strong sorptive properties of these semi-volatile organic compounds (SVOCs), their HLCs were determined by properly evaluating the fraction lost on the surface of the materials used to induce equilibrium (vial, gas-tight syringe, and sorption tube). To this end, a total of nine repeated experiments were conducted in a closed (static) system at three different gas/liquid volume ratios. The best estimates for HLCs (M/atm) were thus 7,200 (propionic acid), 4,700 (i-butyric acid), 4,400 (n-butyric acid), 2,700 (i-valeric acid), 2,400 (n-valeric acid), 1,000 (hexanoic acid), and 1,500 (heptanoic acid). The differences in the HLC values between this study and previous studies, if assessed in terms of the percent difference, ranged from 9.2% (n-valeric acid) to 55.7% (i-valeric acid). We overcame the main cause of errors encountered in previous studies by performing the proper correction of the sorptive losses of the SVOCs that inevitably took place, particularly on the walls of the equilibration systems (mainly the headspace vial and/or the glass tight syringe). PMID:26577086

  4. Parameterization of an interfacial force field for accurate representation of peptide adsorption free energy on high-density polyethylene

    PubMed Central

    Abramyan, Tigran M.; Snyder, James A.; Yancey, Jeremy A.; Thyparambil, Aby A.; Wei, Yang; Stuart, Steven J.; Latour, Robert A.

    2015-01-01

    Interfacial force field (IFF) parameters for use with the CHARMM force field have been developed for interactions between peptides and high-density polyethylene (HDPE). Parameterization of the IFF was performed to achieve agreement between experimental and calculated adsorption free energies of small TGTG–X–GTGT host–guest peptides (T = threonine, G = glycine, and X = variable amino-acid residue) on HDPE, with ±0.5 kcal/mol agreement. This IFF parameter set consists of tuned nonbonded parameters (i.e., partial charges and Lennard–Jones parameters) for use with an in-house-modified CHARMM molecular dynamic program that enables the use of an independent set of force field parameters to control molecular behavior at a solid–liquid interface. The R correlation coefficient between the simulated and experimental peptide adsorption free energies increased from 0.00 for the standard CHARMM force field parameters to 0.88 for the tuned IFF parameters. Subsequent studies are planned to apply the tuned IFF parameter set for the simulation of protein adsorption behavior on an HDPE surface for comparison with experimental values of adsorbed protein orientation and conformation. PMID:25818122

  5. Accurate high level ab initio-based global potential energy surface and dynamics calculations for ground state of CH2(+).

    PubMed

    Li, Y Q; Zhang, P Y; Han, K L

    2015-03-28

    A global many-body expansion potential energy surface is reported for the electronic ground state of CH2 (+) by fitting high level ab initio energies calculated at the multireference configuration interaction level with the aug-cc-pV6Z basis set. The topographical features of the new global potential energy surface are examined in detail and found to be in good agreement with those calculated directly from the raw ab initio energies, as well as previous calculations available in the literature. In turn, in order to validate the potential energy surface, a test theoretical study of the reaction CH(+)(X(1)Σ(+))+H((2)S)→C(+)((2)P)+H2(X(1)Σg (+)) has been carried out with the method of time dependent wavepacket on the title potential energy surface. The total integral cross sections and the rate coefficients have been calculated; the results determined that the new potential energy surface can both be recommended for dynamics studies of any type and as building blocks for constructing the potential energy surfaces of larger C(+)/H containing systems.

  6. Assessment of a sponge layer as a non-reflective boundary treatment with highly accurate gust–airfoil interaction results

    NASA Astrophysics Data System (ADS)

    Crivellini, A.

    2016-02-01

    This paper deals with the numerical performance of a sponge layer as a non-reflective boundary condition. This technique is well known and widely adopted, but only recently have the reasons for a sponge failure been recognised, in analysis by Mani. For multidimensional problems, the ineffectiveness of the method is due to the self-reflections of the sponge occurring when it interacts with an oblique acoustic wave. Based on his theoretical investigations, Mani gives some useful guidelines for implementing effective sponge layers. However, in our opinion, some practical indications are still missing from the current literature. Here, an extensive numerical study of the performance of this technique is presented. Moreover, we analyse a reduced sponge implementation characterised by undamped partial differential equations for the velocity components. The main aim of this paper relies on the determination of the minimal width of the layer, as well as of the corresponding strength, required to obtain a reflection error of no more than a few per cent of that observed when solving the same problem on the same grid, but without employing the sponge layer term. For this purpose, a test case of computational aeroacoustics, the single airfoil gust response problem, has been addressed in several configurations. As a direct consequence of our investigation, we present a well documented and highly validated reference solution for the far-field acoustic intensity, a result that is not well established in the literature. Lastly, the proof of the accuracy of an algorithm for coupling sub-domains solved by the linear and non-liner Euler governing equations is given. This result is here exploited to adopt a linear-based sponge layer even in a non-linear computation.

  7. Assessment of a sponge layer as a non-reflective boundary treatment with highly accurate gust-airfoil interaction results

    NASA Astrophysics Data System (ADS)

    Crivellini, A.

    2016-02-01

    This paper deals with the numerical performance of a sponge layer as a non-reflective boundary condition. This technique is well known and widely adopted, but only recently have the reasons for a sponge failure been recognised, in analysis by Mani. For multidimensional problems, the ineffectiveness of the method is due to the self-reflections of the sponge occurring when it interacts with an oblique acoustic wave. Based on his theoretical investigations, Mani gives some useful guidelines for implementing effective sponge layers. However, in our opinion, some practical indications are still missing from the current literature. Here, an extensive numerical study of the performance of this technique is presented. Moreover, we analyse a reduced sponge implementation characterised by undamped partial differential equations for the velocity components. The main aim of this paper relies on the determination of the minimal width of the layer, as well as of the corresponding strength, required to obtain a reflection error of no more than a few per cent of that observed when solving the same problem on the same grid, but without employing the sponge layer term. For this purpose, a test case of computational aeroacoustics, the single airfoil gust response problem, has been addressed in several configurations. As a direct consequence of our investigation, we present a well documented and highly validated reference solution for the far-field acoustic intensity, a result that is not well established in the literature. Lastly, the proof of the accuracy of an algorithm for coupling sub-domains solved by the linear and non-liner Euler governing equations is given. This result is here exploited to adopt a linear-based sponge layer even in a non-linear computation.

  8. Topology representing network enables highly accurate classification of protein images taken by cryo electron-microscope without masking.

    PubMed

    Ogura, Toshihiko; Iwasaki, Kenji; Sato, Chikara

    2003-09-01

    In single-particle analysis, a three-dimensional (3-D) structure of a protein is constructed using electron microscopy (EM). As these images are very noisy in general, the primary process of this 3-D reconstruction is the classification of images according to their Euler angles, the images in each classified group then being averaged to reduce the noise level. In our newly developed strategy of classification, we introduce a topology representing network (TRN) method. It is a modified method of a growing neural gas network (GNG). In this system, a network structure is automatically determined in response to the images input through a growing process. After learning without a masking procedure, the GNG creates clear averages of the inputs as unit coordinates in multi-dimensional space, which are then utilized for classification. In the process, connections are automatically created between highly related units and their positions are shifted where the inputs are distributed in multi-dimensional space. Consequently, several separated groups of connected units are formed. Although the interrelationship of units in this space are not easily understood, we succeeded in solving this problem by converting the unit positions into two-dimensional (2-D) space, and by further optimizing the unit positions with the simulated annealing (SA) method. In the optimized 2-D map, visualization of the connections of units provided rich information about clustering. As demonstrated here, this method is clearly superior to both the multi-variate statistical analysis (MSA) and the self-organizing map (SOM) as a classification method and provides a first reliable classification method which can be used without masking for very noisy images. PMID:14572474

  9. Arapan-S: a fast and highly accurate whole-genome assembly software for viruses and small genomes

    PubMed Central

    2012-01-01

    Background Genome assembly is considered to be a challenging problem in computational biology, and has been studied extensively by many researchers. It is extremely difficult to build a general assembler that is able to reconstruct the original sequence instead of many contigs. However, we believe that creating specific assemblers, for solving specific cases, will be much more fruitful than creating general assemblers. Findings In this paper, we present Arapan-S, a whole-genome assembly program dedicated to handling small genomes. It provides only one contig (along with the reverse complement of this contig) in many cases. Although genomes consist of a number of segments, the implemented algorithm can detect all the segments, as we demonstrate for Influenza Virus A. The Arapan-S program is based on the de Bruijn graph. We have implemented a very sophisticated and fast method to reconstruct the original sequence and neglect erroneous k-mers. The method explores the graph by using neither the shortest nor the longest path, but rather a specific and reliable path based on the coverage level or k-mers’ lengths. Arapan-S uses short reads, and it was tested on raw data downloaded from the NCBI Trace Archive. Conclusions Our findings show that the accuracy of the assembly was very high; the result was checked against the European Bioinformatics Institute (EBI) database using the NCBI BLAST Sequence Similarity Search. The identity and the genome coverage was more than 99%. We also compared the efficiency of Arapan-S with other well-known assemblers. In dealing with small genomes, the accuracy of Arapan-S is significantly higher than the accuracy of other assemblers. The assembly process is very fast and requires only a few seconds. Arapan-S is available for free to the public. The binary files for Arapan-S are available through http://sourceforge.net/projects/dnascissor/files/. PMID:22591859

  10. Decoding continuous limb movements from high-density epidural electrode arrays using custom spatial filters

    PubMed Central

    Marathe, A R.; Taylor, D M

    2013-01-01

    Objective Our goal was to identify spatial filtering methods that would improve decoding of continuous arm movements from epidural field potentials as well as demonstrate the use of the epidural signals in a closed-loop brain-machine interface (BMI) system in monkeys. Approach Eleven spatial filtering options were compared offline using field potentials collected from 64-channel high-density epidural arrays in monkeys. Arrays were placed over arm/hand motor cortex in which intracortical microelectrodes had previously been implanted and removed leaving focal cortical damage but no lasting motor deficits. Spatial filters tested included: no filtering, common average referencing (CAR), principle component analysis (PCA), and eight novel modifications of the common spatial pattern (CSP) algorithm. The spatial filtering method and decoder combination that performed the best offline was then used online where monkeys controlled cursor velocity using continuous wrist position decoded from epidural field potentials in real time. Main results Optimized CSP methods improved continuous wrist position decoding accuracy by 69% over CAR and by 80% compared to no filtering. Kalman decoders performed better than linear regression decoders and benefitted from including more spatially-filtered signals but not from pre-smoothing the calculated power spectra. Conversely, linear regression decoders required fewer spatially-filtered signals and were improved by pre-smoothing the power values. The ‘position-to-velocity’ transformation used during online control enabled the animals to generate smooth closed-loop movement trajectories using the somewhat limited position information available in the epidural signals. The monkeys’ online performance significantly improved across days of closed-loop training. Significance Most published BMI studies that use electrocortographic signals to decode continuous limb movements either use no spatial filtering or CAR. This study suggests a

  11. Decoding continuous limb movements from high-density epidural electrode arrays using custom spatial filters

    NASA Astrophysics Data System (ADS)

    Marathe, A. R.; Taylor, D. M.

    2013-06-01

    Objective. Our goal was to identify spatial filtering methods that would improve decoding of continuous arm movements from epidural field potentials as well as demonstrate the use of the epidural signals in a closed-loop brain-machine interface (BMI) system in monkeys. Approach. Eleven spatial filtering options were compared offline using field potentials collected from 64-channel high-density epidural arrays in monkeys. Arrays were placed over arm/hand motor cortex in which intracortical microelectrodes had previously been implanted and removed leaving focal cortical damage but no lasting motor deficits. Spatial filters tested included: no filtering, common average referencing (CAR), principle component analysis, and eight novel modifications of the common spatial pattern (CSP) algorithm. The spatial filtering method and decoder combination that performed the best offline was then used online where monkeys controlled cursor velocity using continuous wrist position decoded from epidural field potentials in real time. Main results. Optimized CSP methods improved continuous wrist position decoding accuracy by 69% over CAR and by 80% compared to no filtering. Kalman decoders performed better than linear regression decoders and benefitted from including more spatially-filtered signals but not from pre-smoothing the calculated power spectra. Conversely, linear regression decoders required fewer spatially-filtered signals and were improved by pre-smoothing the power values. The ‘position-to-velocity’ transformation used during online control enabled the animals to generate smooth closed-loop movement trajectories using the somewhat limited position information available in the epidural signals. The monkeys’ online performance significantly improved across days of closed-loop training. Significance. Most published BMI studies that use electrocorticographic signals to decode continuous limb movements either use no spatial filtering or CAR. This study suggests a

  12. Spatial and numerical processing in children with high and low visuospatial abilities.

    PubMed

    Crollen, Virginie; Noël, Marie-Pascale

    2015-04-01

    In the literature on numerical cognition, a strong association between numbers and space has been repeatedly demonstrated. However, only a few recent studies have been devoted to examine the consequences of low visuospatial abilities on calculation processing. In this study, we wanted to investigate whether visuospatial weakness may affect pure spatial processing as well as basic numerical reasoning. To do so, the performances of children with high and low visuospatial abilities were directly compared on different spatial tasks (the line bisection and Simon tasks) and numerical tasks (the number bisection, number-to-position, and numerical comparison tasks). Children from the low visuospatial group presented the classic Simon and SNARC (spatial numerical association of response codes) effects but showed larger deviation errors as compared with the high visuospatial group. Our results, therefore, demonstrated that low visuospatial abilities did not change the nature of the mental number line but rather led to a decrease in its accuracy. PMID:25618380

  13. Are skinfold-based models accurate and suitable for assessing changes in body composition in highly trained athletes?

    PubMed

    Silva, Analiza M; Fields, David A; Quitério, Ana L; Sardinha, Luís B

    2009-09-01

    This study was designed to assess the usefulness of skinfold (SKF) equations developed by Jackson and Pollock (JP) and by Evans (Ev) in tracking body composition changes (relative fat mass [%FM], absolute fat mass [FM], and fat-free mass [FFM]) of elite male judo athletes before a competition using a 4-compartment (4C) model as the reference method. A total of 18 male, top-level (age: 22.6 +/- 2.9 yr) athletes were evaluated at baseline (weight: 73.4 +/- 7.9 kg; %FM4C: 7.0 +/- 3.3%; FM4C: 5.1 +/- 2.6 kg; and FFM4C: 68.3 +/- 7.3 kg) and before a competition (weight: 72.7 +/- 7.5 kg; %FM4C: 6.5 +/- 3.4%; FM4C: 4.8 +/- 2.6 kg; and FFM4C: 67.9 +/- 7.1 kg). Measures of body density assessed by air displacement plethysmography, bone mineral content by dual energy X-ray absorptiometry, and total-body water by bioelectrical impedance spectroscopy were used to estimate 4C model %FM, FM, and FFM. Seven SKF site models using both JP and Ev were used to estimate %FM, FM, and FFM along with the simplified Ev3SKF site. Changes in %FM, FM, and FFM were not significantly different from the 4C model. The regression model for the SKF in question and the reference method did not differ from the line of identity in estimating changes in %FM, FM, and FFM. The limits of agreement were similar, ranging from -3.4 to 3.6 for %FM, -2.7 to 2.5 kg for FM, and -2.5 to 2.7 kg for FFM. Considering the similar performance of both 7SKF- and 3SKF-based equations compared with the criterion method, these data indicate that either the 7- or 3-site SFK models are not valid to detect %FM, FM, and FFM changes of highly trained athletes. These results highlighted the inaccuracy of anthropometric models in tracking desired changes in body composition of elite male judo athletes before a competition.

  14. Gaussian-Schell analysis of the transverse spatial properties of high-harmonic beams

    PubMed Central

    Lloyd, David T.; O’Keeffe, Kevin; Anderson, Patrick N.; Hooker, Simon M.

    2016-01-01

    High harmonic generation (HHG) is an established means of producing coherent, short wavelength, ultrafast pulses from a compact set-up. Table-top high-harmonic sources are increasingly being used to image physical and biological systems using emerging techniques such as coherent diffraction imaging and ptychography. These novel imaging methods require coherent illumination, and it is therefore important to both characterize the spatial coherence of high-harmonic beams and understand the processes which limit this property. Here we investigate the near- and far-field spatial properties of high-harmonic radiation generated in a gas cell. The variation with harmonic order of the intensity profile, wavefront curvature, and complex coherence factor is measured in the far-field by the SCIMITAR technique. Using the Gaussian-Schell model, the properties of the harmonic beam in the plane of generation are deduced. Our results show that the order-dependence of the harmonic spatial coherence is consistent with partial coherence induced by both variation of the intensity-dependent dipole phase as well as finite spatial coherence of the driving radiation. These findings are used to suggest ways in which the coherence of harmonic beams could be increased further, which would have direct benefits to imaging with high-harmonic radiation. PMID:27465654

  15. Using High Spatial Resolution to Improve BOLD fMRI Detection at 3T

    PubMed Central

    Claise, Béatrice; Jean, Betty

    2015-01-01

    For different functional magnetic resonance imaging experiments using blood oxygenation level-dependent (BOLD) contrast, the acquisition of T2*-weighted scans at a high spatial resolution may be advantageous in terms of time-course signal-to-noise ratio and of BOLD sensitivity when the regions are prone to susceptibility artifacts. In this study, we explore this solution by examining how spatial resolution influences activations elicited when appetizing food pictures are viewed. Twenty subjects were imaged at 3 T with two different voxel volumes, 3.4 μl and 27 μl. Despite the diminution of brain coverage, we found that high-resolution acquisition led to a better detection of activations. Though known to suffer to different degrees from susceptibility artifacts, the activations detected by high spatial resolution were notably consistent with those reported in published activation likelihood estimation meta-analyses, corresponding to taste-responsive regions. Furthermore, these regions were found activated bilaterally, in contrast with previous findings. Both the reduction of partial volume effect, which improves BOLD contrast, and the mitigation of susceptibility artifact, which boosts the signal to noise ratio in certain regions, explained the better detection noted with high resolution. The present study provides further evidences that high spatial resolution is a valuable solution for human BOLD fMRI, especially for studying food-related stimuli. PMID:26550990

  16. Pigeons use low rather than high spatial frequency information to make visual category discriminations.

    PubMed

    Lea, Stephen E G; De Filippo, Guido; Dakin, Ruth; Meier, Christina

    2013-10-01

    Pigeons were trained to discriminate photographs of cat faces from dog faces. They were then presented with test stimuli involving high- and low-pass spatial frequency filtering. Discrimination was maintained with both types of filtered stimuli, though it was increasingly impaired the more information was filtered out, and high-pass filtering impaired discrimination more than low-pass filtering. The pigeons were then exposed to hybrid stimuli in which high-pass filtered dog faces were combined with low-pass filtered cat faces, and vice versa. Response to hybrid stimuli was determined more by the low spatial frequency content than by the high-frequency content, whereas humans viewing the same stimuli at corresponding viewing distance respond more strongly to the high-frequency content. These results are unexpected given that, compared with humans, pigeons' behavior tends to be controlled by the local details of visual stimuli rather than their global appearance.

  17. Accurate CpG and non-CpG cytosine methylation analysis by high-throughput locus-specific pyrosequencing in plants.

    PubMed

    How-Kit, Alexandre; Daunay, Antoine; Mazaleyrat, Nicolas; Busato, Florence; Daviaud, Christian; Teyssier, Emeline; Deleuze, Jean-François; Gallusci, Philippe; Tost, Jörg

    2015-07-01

    Pyrosequencing permits accurate quantification of DNA methylation of specific regions where the proportions of the C/T polymorphism induced by sodium bisulfite treatment of DNA reflects the DNA methylation level. The commercially available high-throughput locus-specific pyrosequencing instruments allow for the simultaneous analysis of 96 samples, but restrict the DNA methylation analysis to CpG dinucleotide sites, which can be limiting in many biological systems. In contrast to mammals where DNA methylation occurs nearly exclusively on CpG dinucleotides, plants genomes harbor DNA methylation also in other sequence contexts including CHG and CHH motives, which cannot be evaluated by these pyrosequencing instruments due to software limitations. Here, we present a complete pipeline for accurate CpG and non-CpG cytosine methylation analysis at single base-resolution using high-throughput locus-specific pyrosequencing. The devised approach includes the design and validation of PCR amplification on bisulfite-treated DNA and pyrosequencing assays as well as the quantification of the methylation level at every cytosine from the raw peak intensities of the Pyrograms by two newly developed Visual Basic Applications. Our method presents accurate and reproducible results as exemplified by the cytosine methylation analysis of the promoter regions of two Tomato genes (NOR and CNR) encoding transcription regulators of fruit ripening during different stages of fruit development. Our results confirmed a significant and temporally coordinated loss of DNA methylation on specific cytosines during the early stages of fruit development in both promoters as previously shown by WGBS. The manuscript describes thus the first high-throughput locus-specific DNA methylation analysis in plants using pyrosequencing.

  18. Accurate CpG and non-CpG cytosine methylation analysis by high-throughput locus-specific pyrosequencing in plants.

    PubMed

    How-Kit, Alexandre; Daunay, Antoine; Mazaleyrat, Nicolas; Busato, Florence; Daviaud, Christian; Teyssier, Emeline; Deleuze, Jean-François; Gallusci, Philippe; Tost, Jörg

    2015-07-01

    Pyrosequencing permits accurate quantification of DNA methylation of specific regions where the proportions of the C/T polymorphism induced by sodium bisulfite treatment of DNA reflects the DNA methylation level. The commercially available high-throughput locus-specific pyrosequencing instruments allow for the simultaneous analysis of 96 samples, but restrict the DNA methylation analysis to CpG dinucleotide sites, which can be limiting in many biological systems. In contrast to mammals where DNA methylation occurs nearly exclusively on CpG dinucleotides, plants genomes harbor DNA methylation also in other sequence contexts including CHG and CHH motives, which cannot be evaluated by these pyrosequencing instruments due to software limitations. Here, we present a complete pipeline for accurate CpG and non-CpG cytosine methylation analysis at single base-resolution using high-throughput locus-specific pyrosequencing. The devised approach includes the design and validation of PCR amplification on bisulfite-treated DNA and pyrosequencing assays as well as the quantification of the methylation level at every cytosine from the raw peak intensities of the Pyrograms by two newly developed Visual Basic Applications. Our method presents accurate and reproducible results as exemplified by the cytosine methylation analysis of the promoter regions of two Tomato genes (NOR and CNR) encoding transcription regulators of fruit ripening during different stages of fruit development. Our results confirmed a significant and temporally coordinated loss of DNA methylation on specific cytosines during the early stages of fruit development in both promoters as previously shown by WGBS. The manuscript describes thus the first high-throughput locus-specific DNA methylation analysis in plants using pyrosequencing. PMID:26072424

  19. Accurate calculation of chemical shifts in highly dynamic H2@C60 through an integrated quantum mechanics/molecular dynamics scheme.

    PubMed

    Jiménez-Osés, Gonzalo; García, José I; Corzana, Francisco; Elguero, José

    2011-05-20

    A new protocol combining classical MD simulations and DFT calculations is presented to accurately estimate the (1)H NMR chemical shifts of highly mobile guest-host systems and their thermal dependence. This strategy has been successfully applied for the hydrogen molecule trapped into C(60) fullerene, an unresolved and challenging prototypical case for which experimental values have never been reproduced. The dependence of the final values on the theoretical method and their implications to avoid over interpretation of the obtained results are carefully described.

  20. High spatial resolution X-ray and gamma ray imaging system using diffraction crystals

    DOEpatents

    Smither, Robert K.

    2011-05-17

    A method and a device for high spatial resolution imaging of a plurality of sources of x-ray and gamma-ray radiation are provided. The device comprises a plurality of arrays, with each array comprising a plurality of elements comprising a first collimator, a diffracting crystal, a second collimator, and a detector.

  1. A system for optically controlling neural circuits with very high spatial and temporal resolution

    PubMed Central

    Pandarinath, Chethan; Carlson, Eric T.; Nirenberg, Sheila

    2015-01-01

    Optogenetics offers a powerful new approach for controlling neural circuits. It has a vast array of applications in both basic and clinical science. For basic science, it opens the door to unraveling circuit operations, since one can perturb specific circuit components with high spatial (single cell) and high temporal (millisecond) resolution. For clinical applications, it allows new kinds of selective treatments, because it provides a method to inactivate or activate specific components in a malfunctioning circuit and bring it back into a normal operating range [1–3]. To harness the power of optogenetics, though, one needs stimulating tools that work with the same high spatial and temporal resolution as the molecules themselves, the channelrhodopsins. To date, most stimulating tools require a tradeoff between spatial and temporal precision and are prohibitively expensive to integrate into a stimulating/recording setup in a laboratory or a device in a clinical setting [4, 5]. Here we describe a Digital Light Processing (DLP)-based system capable of extremely high temporal resolution (sub-millisecond), without sacrificing spatial resolution. Furthermore, it is constructed using off-the-shelf components, making it feasible for a broad range of biology and bioengineering labs. Using transgenic mice that express channelrhodopsin-2 (ChR2), we demonstrate the system’s capability for stimulating channelrhodopsin-expressing neurons in tissue with single cell and sub-millisecond precision. PMID:25699292

  2. Accurate flexible fitting of high-resolution protein structures to small-angle x-ray scattering data using a coarse-grained model with implicit hydration shell.

    PubMed

    Zheng, Wenjun; Tekpinar, Mustafa

    2011-12-21

    Small-angle x-ray scattering (SAXS) is a powerful technique widely used to explore conformational states and transitions of biomolecular assemblies in solution. For accurate model reconstruction from SAXS data, one promising approach is to flexibly fit a known high-resolution protein structure to low-resolution SAXS data by computer simulations. This is a highly challenging task due to low information content in SAXS data. To meet this challenge, we have developed what we believe to be a novel method based on a coarse-grained (one-bead-per-residue) protein representation and a modified form of the elastic network model that allows large-scale conformational changes while maintaining pseudobonds and secondary structures. Our method optimizes a pseudoenergy that combines the modified elastic-network model energy with a SAXS-fitting score and a collision energy that penalizes steric collisions. Our method uses what we consider a new implicit hydration shell model that accounts for the contribution of hydration shell to SAXS data accurately without explicitly adding waters to the system. We have rigorously validated our method using five test cases with simulated SAXS data and three test cases with experimental SAXS data. Our method has successfully generated high-quality structural models with root mean-squared deviation of 1 ∼ 3 Å from the target structures.

  3. Ultrafast laser induced breakdown spectroscopy for high spatial resolution chemical analysis

    NASA Astrophysics Data System (ADS)

    Zorba, Vassilia; Mao, Xianglei; Russo, Richard E.

    2011-02-01

    Femtosecond laser induced breakdown spectroscopy (LIBS) was used to identify the spatial resolution limitations and assess the minimal detectable mass restrictions in laser-ablation based chemical analysis. The atomic emission of sodium (Na) and potassium (K) dopants in transparent dielectric Mica matrices was studied, to find that both these elements could be detected from 450 nm diameter ablation craters, full-width-at-half-maximum (FWHM). Under optimal conditions, mass as low as 220 ag was measured, demonstrating the feasibility of using laser-ablation based chemical analysis to achieve high spatial resolution elemental analysis in real-time and at atmospheric pressure conditions.

  4. Characterization of a high efficiency, ultrashort pulse shaper incorporating a reflective 4096-element spatial light modulator

    NASA Astrophysics Data System (ADS)

    Field, Jeffrey J.; Planchon, Thomas A.; Amir, Wafa; Durfee, Charles G.; Squier, Jeff A.

    2007-10-01

    We demonstrate pulse shaping via arbitrary phase modulation with a reflective, 1 × 4096 element, liquid crystal spatial light modulator (SLM). The unique construction of this device provides a very high efficiency when the device is used for phase modulation only in a prism based pulse shaper, namely 85%. We also present a single shot characterization of the SLM in the spatial domain and a single shot characterization of the pulse shaper in the spectral domain. These characterization methods provide a detailed picture of how the SLM modifies the spectral phase of an ultrashort pulse.

  5. Quantitative phase imaging of biological cells using spatially low and temporally high coherent light source.

    PubMed

    Ahmad, Azeem; Dubey, Vishesh; Singh, Gyanendra; Singh, Veena; Mehta, Dalip Singh

    2016-04-01

    In this Letter, we demonstrate quantitative phase imaging of biological samples, such as human red blood cells (RBCs) and onion cells using narrow temporal frequency and wide angular frequency spectrum light source. This type of light source was synthesized by the combined effect of spatial, angular, and temporal diversity of speckle reduction technique. The importance of using low spatial and high temporal coherence light source over the broad band and narrow band light source is that it does not require any dispersion compensation mechanism for biological samples. Further, it avoids the formation of speckle or spurious fringes which arises while using narrow band light source. PMID:27192285

  6. Characterization of a High Efficiency, Ultrashort Pulse Shaper Incorporating a Reflective 4096-Element Spatial Light Modulator

    PubMed Central

    Field, Jeffrey J.; Planchon, Thomas A.; Amir, Wafa; Durfee, Charles G.; Squier, Jeff A.

    2009-01-01

    We demonstrate pulse shaping via arbitrary phase modulation with a reflective, 1×4096 element, liquid crystal spatial light modulator (SLM). The unique construction of this device provides a very high efficiency when the device is used for phase modulation only in a prism based pulse shaper, namely 85%. We also present a single shot characterization of the SLM in the spatial domain and a single shot characterization of the pulse shaper in the spectral domain. These characterization methods provide a detailed picture of how the SLM modifies the spectral phase of an ultrashort pulse. PMID:19562096

  7. Characterization of a High Efficiency, Ultrashort Pulse Shaper Incorporating a Reflective 4096-Element Spatial Light Modulator.

    PubMed

    Field, Jeffrey J; Planchon, Thomas A; Amir, Wafa; Durfee, Charles G; Squier, Jeff A

    2007-10-15

    We demonstrate pulse shaping via arbitrary phase modulation with a reflective, 1×4096 element, liquid crystal spatial light modulator (SLM). The unique construction of this device provides a very high efficiency when the device is used for phase modulation only in a prism based pulse shaper, namely 85%. We also present a single shot characterization of the SLM in the spatial domain and a single shot characterization of the pulse shaper in the spectral domain. These characterization methods provide a detailed picture of how the SLM modifies the spectral phase of an ultrashort pulse.

  8. High-resolution wavefront control using liquid crystal spatial light modulators

    SciTech Connect

    Bauman, B J; Brase, J M; Brown, C G; Cooke, J B; Kartz, M W; Olivier, S S; Pennington, D M; Silva, D A

    1999-07-20

    Liquid crystal spatial light modulator technology appropriate for high-resolution wavefront control has recently become commercially available. Some of these devices have several hundred thousand controllable degrees of freedom, more than two orders of magnitude greater than the largest conventional deformable mirror. We will present results of experiments to characterize the optical properties of these devices and to utilize them to correct aberrations in an optical system. We will also present application scenarios for these devices in high-power laser systems.

  9. High Resolution Spatial and Temporal Mapping of Traffic-Related Air Pollutants

    PubMed Central

    Batterman, Stuart; Ganguly, Rajiv; Harbin, Paul

    2015-01-01

    Vehicle traffic is one of the most significant emission sources of air pollutants in urban areas. While the influence of mobile source emissions is felt throughout an urban area, concentrations from mobile emissions can be highest near major roadways. At present, information regarding the spatial and temporal patterns and the share of pollution attributable to traffic-related air pollutants is limited, in part due to concentrations that fall sharply with distance from roadways, as well as the few monitoring sites available in cities. This study uses a newly developed dispersion model (RLINE) and a spatially and temporally resolved emissions inventory to predict hourly PM2.5 and NOx concentrations across Detroit (MI, USA) at very high spatial resolution. Results for annual averages and high pollution days show contrasting patterns, the need for spatially resolved analyses, and the limitations of surrogate metrics like proximity or distance to roads. Data requirements, computational and modeling issues are discussed. High resolution pollutant data enable the identification of pollutant “hotspots”, “project-level” analyses of transportation options, development of exposure measures for epidemiology studies, delineation of vulnerable and susceptible populations, policy analyses examining risks and benefits of mitigation options, and the development of sustainability indicators integrating environmental, social, economic and health information. PMID:25837345

  10. High cognitive reserve is associated with a reduced age-related deficit in spatial conflict resolution

    PubMed Central

    Puccioni, Olga; Vallesi, Antonino

    2012-01-01

    Several studies support the existence of a specific age-related difficulty in suppressing potentially distracting information. The aim of the present study is to investigate whether spatial conflict resolution is selectively affected by aging. The way aging affects individuals could be modulated by many factors determined by the socieconomic status: we investigated whether factors such as cognitive reserve (CR) and years of education may play a compensatory role against age-related deficits in the spatial domain. A spatial Stroop task with no feature repetitions was administered to a sample of 17 non-demented older adults (69–79 years-old) and 18 younger controls (18–34 years-old) matched for gender and years of education. The two age groups were also administered with measures of intelligence and CR. The overall spatial Stroop effect did not differ according to age, neither for speed nor for accuracy. The two age groups equally showed sequential effects for congruent trials: reduced response times (RTs) if another congruent trial preceded them, and accuracy at ceiling. For incongruent trials, older adults, but not younger controls, were influenced by congruency of trialn−1, since RTs increased with preceding congruent trials. Interestingly, such an age-related modulation negatively correlated with CR. These findings suggest that spatial conflict resolution in aging is predominantly affected by general slowing, rather than by a more specific deficit. However, a high level of CR seems to play a compensatory role for both factors. PMID:23248595

  11. High-Resolution Spatial Distribution and Estimation of Access to Improved Sanitation in Kenya

    PubMed Central

    Jia, Peng; Anderson, John D.; Leitner, Michael; Rheingans, Richard

    2016-01-01

    Background Access to sanitation facilities is imperative in reducing the risk of multiple adverse health outcomes. A distinct disparity in sanitation exists among different wealth levels in many low-income countries, which may hinder the progress across each of the Millennium Development Goals. Methods The surveyed households in 397 clusters from 2008–2009 Kenya Demographic and Health Surveys were divided into five wealth quintiles based on their national asset scores. A series of spatial analysis methods including excess risk, local spatial autocorrelation, and spatial interpolation were applied to observe disparities in coverage of improved sanitation among different wealth categories. The total number of the population with improved sanitation was estimated by interpolating, time-adjusting, and multiplying the surveyed coverage rates by high-resolution population grids. A comparison was then made with the annual estimates from United Nations Population Division and World Health Organization /United Nations Children's Fund Joint Monitoring Program for Water Supply and Sanitation. Results The Empirical Bayesian Kriging interpolation produced minimal root mean squared error for all clusters and five quintiles while predicting the raw and spatial coverage rates of improved sanitation. The coverage in southern regions was generally higher than in the north and east, and the coverage in the south decreased from Nairobi in all directions, while Nyanza and North Eastern Province had relatively poor coverage. The general clustering trend of high and low sanitation improvement among surveyed clusters was confirmed after spatial smoothing. Conclusions There exists an apparent disparity in sanitation among different wealth categories across Kenya and spatially smoothed coverage rates resulted in a closer estimation of the available statistics than raw coverage rates. Future intervention activities need to be tailored for both different wealth categories and nationally

  12. Spatial drought reconstructions for central High Asia based on tree rings

    NASA Astrophysics Data System (ADS)

    Fang, Keyan; Davi, Nicole; Gou, Xiaohua; Chen, Fahu; Cook, Edward; Li, Jinbao; D'Arrigo, Rosanne

    2010-11-01

    Spatial reconstructions of drought for central High Asia based on a tree-ring network are presented. Drought patterns for central High Asia are classified into western and eastern modes of variability. Tree-ring based reconstructions of the Palmer drought severity index (PDSI) are presented for both the western central High Asia drought mode (1587-2005), and for the eastern central High Asia mode (1660-2005). Both reconstructions, generated using a principal component regression method, show an increased variability in recent decades. The wettest epoch for both reconstructions occurred from the 1940s to the 1950s. The most extreme reconstructed drought for western central High Asia was from the 1640s to the 1650s, coinciding with the collapse of the Chinese Ming Dynasty. The eastern central High Asia reconstruction has shown a distinct tendency towards drier conditions since the 1980s. Our spatial reconstructions agree well with previous reconstructions that fall within each mode, while there is no significant correlation between the two spatial reconstructions.

  13. Repeatable, accurate, and high speed multi-level programming of memristor 1T1R arrays for power efficient analog computing applications

    NASA Astrophysics Data System (ADS)

    Merced-Grafals, Emmanuelle J.; Dávila, Noraica; Ge, Ning; Williams, R. Stanley; Strachan, John Paul

    2016-09-01

    Beyond use as high density non-volatile memories, memristors have potential as synaptic components of neuromorphic systems. We investigated the suitability of tantalum oxide (TaOx) transistor-memristor (1T1R) arrays for such applications, particularly the ability to accurately, repeatedly, and rapidly reach arbitrary conductance states. Programming is performed by applying an adaptive pulsed algorithm that utilizes the transistor gate voltage to control the SET switching operation and increase programming speed of the 1T1R cells. We show the capability of programming 64 conductance levels with <0.5% average accuracy using 100 ns pulses and studied the trade-offs between programming speed and programming error. The algorithm is also utilized to program 16 conductance levels on a population of cells in the 1T1R array showing robustness to cell-to-cell variability. In general, the proposed algorithm results in approximately 10× improvement in programming speed over standard algorithms that do not use the transistor gate to control memristor switching. In addition, after only two programming pulses (an initialization pulse followed by a programming pulse), the resulting conductance values are within 12% of the target values in all cases. Finally, endurance of more than 106 cycles is shown through open-loop (single pulses) programming across multiple conductance levels using the optimized gate voltage of the transistor. These results are relevant for applications that require high speed, accurate, and repeatable programming of the cells such as in neural networks and analog data processing.

  14. An Accurate Quartic Force Field, Fundamental Frequencies, and Binding Energy for the High Energy Density Material T(d)N4

    NASA Technical Reports Server (NTRS)

    Lee, Timothy J.; Martin, Jan M. L.; Kwak, Dochan (Technical Monitor)

    2002-01-01

    The CCSD(T) method has been used to compute a highly accurate quartic force field and fundamental frequencies for all N-14 and N-15 isotopomers of the high energy density material T(sub d)N(sub 4). The computed fundamental frequencies show beyond doubt that the bands observed in a matrix isolation experiment by Radziszewski and coworkers are not due to different isotopomers of T(sub d)N(sub 4). The most sophisticated thermochemical calculations to date yield a N(sub 4) -> 2N(sub 2) heat of reaction of 182.22 +/- 0.5 kcal/mol at 0 K (180.64 +/- 0.5 at 298 K). It is hoped that the data reported herein will aid in the ultimate detection of T(sub d)N(sub 4).

  15. Detection of Local Anomalies in High Resolution Hyperspectral Imagery Using Geostatistical Filtering and Local Spatial Statistics

    NASA Astrophysics Data System (ADS)

    Goovaerts, P.; Jacquez, G. M.; Marcus, A. W.

    2004-12-01

    Spatial data are periodically collected and processed to monitor, analyze and interpret developments in our changing environment. Remote sensing is a modern way of data collecting and has seen an enormous growth since launching of modern satellites and development of airborne sensors. In particular, the recent availability of high spatial resolution hyperspectral imagery (spatial resolution of less than 5 meters and including data collected over 64 or more bands of electromagnetic radiation for each pixel offers a great potential to significantly enhance environmental mapping and our ability to model spatial systems. High spatial resolution imagery contains a remarkable quantity of information that could be used to analyze spatial breaks (boundaries), areas of similarity (clusters), and spatial autocorrelation (associations) across the landscape. This paper addresses the specific issue of soil disturbance detection, which could indicate the presence of land mines or recent movements of troop and heavy equipment. A challenge presented by soil detection is to retain the measurement of fine-scale features (i.e. mineral soil changes, organic content changes, vegetation disturbance related changes, aspect changes) while still covering proportionally large spatial areas. An additional difficulty is that no ground data might be available for the calibration of spectral signatures, and little might be known about the size of patches of disturbed soils to be detected. This paper describes a new technique for automatic target detection which capitalizes on both spatial and across spectral bands correlation, does not require any a priori information on the target spectral signature but does not allow discrimination between targets. This approach involves successively a multivariate statistical analysis (principal component analysis) of all spectral bands, a geostatistical filtering of noise and regional background in the first principal components using factorial kriging, and

  16. Lipid Suppression in CSI with Spatial Priors and Highly Undersampled Peripheral k-space

    PubMed Central

    Bilgic, Berkin; Gagoski, Borjan; Kok, Trina; Adalsteinsson, Elfar

    2012-01-01

    Mapping 1H brain metabolites using chemical shift imaging (CSI) is hampered by the presence of subcutaneous lipid signals, which contaminate the metabolites by ringing due to limited spatial resolution. Even though CSI at spatial resolution high enough to mitigate the lipid artifacts is infeasible due to signal-to-noise (SNR) constraints on the metabolites, the lipid signals have orders of magnitude higher concentration, which enables the collection of high-resolution lipid maps with adequate SNR. The previously proposed dual-density approach exploits this high-SNR property of the lipid layer to suppress truncation artifacts using high-resolution lipid maps. Another recent approach for lipid suppression makes use of the fact that metabolite and lipid spectra are approximately orthogonal, and seeks sparse metabolite spectra when projected onto lipid-basis functions. The present work combines and extends the dual-density approach and the lipid-basis penalty, while estimating the high-resolution lipid image from 2-average k-space data to incur minimal increase on the scan time. Further, we exploit the spectral-spatial sparsity of the lipid ring and propose to estimate it from substantially undersampled (acceleration R = 10 in the peripheral k-space) 2-average in vivo data using compressed sensing, and still obtain improved lipid suppression relative to using dual-density or lipid-basis penalty alone. PMID:22807147

  17. Lipid suppression in CSI with spatial priors and highly undersampled peripheral k-space.

    PubMed

    Bilgic, Berkin; Gagoski, Borjan; Kok, Trina; Adalsteinsson, Elfar

    2013-06-01

    Mapping 1H brain metabolites using chemical shift imaging is hampered by the presence of subcutaneous lipid signals, which contaminate the metabolites by ringing due to limited spatial resolution. Even though chemical shift imaging at spatial resolution high enough to mitigate the lipid artifacts is infeasible due to signal-to-noise constraints on the metabolites, the lipid signals have orders of magnitude of higher concentration, which enables the collection of high-resolution lipid maps with adequate signal-to-noise. The previously proposed dual-density approach exploits this high signal-to-noise property of the lipid layer to suppress truncation artifacts using high-resolution lipid maps. Another recent approach for lipid suppression makes use of the fact that metabolite and lipid spectra are approximately orthogonal, and seeks sparse metabolite spectra when projected onto lipid-basis functions. This work combines and extends the dual-density approach and the lipid-basis penalty, while estimating the high-resolution lipid image from 2-average k-space data to incur minimal increase on the scan time. Further, we exploit the spectral-spatial sparsity of the lipid ring and propose to estimate it from substantially undersampled (acceleration R=10 in the peripheral k-space) 2-average in vivo data using compressed sensing and still obtain improved lipid suppression relative to using dual-density or lipid-basis penalty alone.

  18. Super-smooth optical fabrication controlling high-spatial frequency surface irregularity

    NASA Astrophysics Data System (ADS)

    Del Hoyo, Javier; Kim, Dae Wook; Burge, James H.

    2013-09-01

    Modern advanced optical systems often require challenging high spatial frequency surface error control during their optical fabrication processes. While the large scale surface figure error can be controlled by directed material removal processes such as small tool figuring, surface finish (<<1mm scales) is controlled with the polishing process. For large aspheric optical systems, surface shape irregularities of a few millimeters in scale may cause serious performance degradation in terms of scattered light background noise and high contrast imaging capability. The conventional surface micro roughness concept in Root Mean Square (RMS) over a very high spatial frequency range (e.g. RMS of 0.5 by 0.5 mm local surface map with 500 by 500 pixels) is not sufficient to describe or specify these surface characteristics. For various experimental polishing conditions, we investigate the process control for high frequency surface errors with periods up to ~2-3mm. The Power Spectral Density of the finished optical surfaces has been measured and analyzed to relate various computer controlled optical surfacing parameters (e.g. polishing interface materials) with the high spatial frequency errors on the surface. The experiment-based optimal polishing conditions and processes producing a super smooth optical surface while controlling surface irregularity at the millimeter range are presented.

  19. Improving the quantification at high spatial resolution using a field emission electron microprobe

    NASA Astrophysics Data System (ADS)

    Pinard, P. T.; Richter, S.

    2014-03-01

    The capabilities of field emitter electron microprobes to perform quantitative measurements at high spatial resolution are discussed. Using Fe-Cr-C particles in a bearing steel (SAE 52100) as example, a generic procedure was established to find the optimal analytical conditions (beam energy, beam current and acquisition time). The influence of these parameters on the accuracy, precision and spatial resolution was evaluated using experimental measurements and Monte Carlo simulations. A quantification procedure was developed for soft X-ray lines, taking into account the overlap of high order X-ray lines and background anomalies. The accuracy of Ka- and La-lines was verified using reference materials. A relationship between experimental and simulated X-ray intensities was determined to evaluate the measurement precision. The spatial resolution of each X-ray line was calculated from the simulated lateral and depth X-ray intensity distribution using simulations integrating experimentally measured beam diameters. The optimal analytical conditions for the studied sample were found to be 5 keV, 10 nA and 10 s acquisition time. Further specialized techniques to improve the spatial resolution are presented: focused ion beam preparation of thin lamella and wedge, and Monte Carlo based reconstruction. The feasibility of the latter to quantify features smaller than the X-ray emission volume was demonstrated.

  20. Multi-resolution analysis of high density spatial and temporal cloud inhomogeneity fields from HOPE campaign

    NASA Astrophysics Data System (ADS)

    Lakshmi Madhavan, Bomidi; Deneke, Hartwig; Macke, Andreas

    2015-04-01

    Clouds are the most complex structures in both spatial and temporal scales of the Earth's atmosphere that effect the downward surface reaching fluxes and thus contribute to large uncertainty in the global radiation budget. Within the framework of High Definition Clouds and Precipitation for advancing Climate Prediction (HD(CP)2) Observational Prototype Experiment (HOPE), a high density network of 99 pyranometer stations was set up around Jülich, Germany (~ 10 × 12 km2 area) during April to July 2013 to capture the small-scale variability in cloud induced radiation fields at the surface. In this study, we perform multi-resolution analysis of the downward solar irradiance variability at the surface from the pyranometer network to investigate the dependence of temporal and spatial averaging scales on the variance and spatial correlation for different cloud regimes. Preliminary results indicate that correlation is strongly scale-dependent where as the variance is dependent on the length of averaging period. Implications of our findings will be useful for quantifying the effect of spatial collocation while validating the satellite inferred solar irradiance estimates, and also to explore the link between cloud structure and radiation. We will present the details of our analysis and results.

  1. High dimensional spatial modeling of extremes with applications to United States Rainfalls

    NASA Astrophysics Data System (ADS)

    Zhou, Jie

    2007-12-01

    Spatial statistical models are used to predict unobserved variables based on observed variables and to estimate unknown model parameters. Extreme value theory(EVT) is used to study large or small observations from a random phenomenon. Both spatial statistics and extreme value theory have been studied in a lot of areas such as agriculture, finance, industry and environmental science. This dissertation proposes two spatial statistical models which concentrate on non-Gaussian probability densities with general spatial covariance structures. The two models are also applied in analyzing United States Rainfalls and especially, rainfall extremes. When the data set is not too large, the first model is used. The model constructs a generalized linear mixed model(GLMM) which can be considered as an extension of Diggle's model-based geostatistical approach(Diggle et al. 1998). The approach improves conventional kriging with a form of generalized linear mixed structure. As for high dimensional problems, two different methods are established to improve the computational efficiency of Markov Chain Monte Carlo(MCMC) implementation. The first method is based on spectral representation of spatial dependence structures which provides good approximations on each MCMC iteration. The other method embeds high dimensional covariance matrices in matrices with block circulant structures. The eigenvalues and eigenvectors of block circulant matrices can be calculated exactly by Fast Fourier Transforms(FFT). The computational efficiency is gained by transforming the posterior matrices into lower dimensional matrices. This method gives us exact update on each MCMC iteration. Future predictions are also made by keeping spatial dependence structures fixed and using the relationship between present days and future days provided by some Global Climate Model(GCM). The predictions are refined by sampling techniques. Both ways of handling high dimensional covariance matrices are novel to analyze large

  2. High spatial resolution brain functional MRI using submillimeter balanced steady-state free precession acquisition

    SciTech Connect

    Wu, Pei-Hsin; Chung, Hsiao-Wen; Tsai, Ping-Huei; Wu, Ming-Long; Chuang, Tzu-Chao; Shih, Yi-Yu; Huang, Teng-Yi

    2013-12-15

    Purpose: One of the technical advantages of functional magnetic resonance imaging (fMRI) is its precise localization of changes from neuronal activities. While current practice of fMRI acquisition at voxel size around 3 × 3 × 3 mm{sup 3} achieves satisfactory results in studies of basic brain functions, higher spatial resolution is required in order to resolve finer cortical structures. This study investigated spatial resolution effects on brain fMRI experiments using balanced steady-state free precession (bSSFP) imaging with 0.37 mm{sup 3} voxel volume at 3.0 T. Methods: In fMRI experiments, full and unilateral visual field 5 Hz flashing checkerboard stimulations were given to healthy subjects. The bSSFP imaging experiments were performed at three different frequency offsets to widen the coverage, with functional activations in the primary visual cortex analyzed using the general linear model. Variations of the spatial resolution were achieved by removing outerk-space data components. Results: Results show that a reduction in voxel volume from 3.44 × 3.44 × 2 mm{sup 3} to 0.43 × 0.43 × 2 mm{sup 3} has resulted in an increase of the functional activation signals from (7.7 ± 1.7)% to (20.9 ± 2.0)% at 3.0 T, despite of the threefold SNR decreases in the original images, leading to nearly invariant functional contrast-to-noise ratios (fCNR) even at high spatial resolution. Activation signals aligning nicely with gray matter sulci at high spatial resolution would, on the other hand, have possibly been mistaken as noise at low spatial resolution. Conclusions: It is concluded that the bSSFP sequence is a plausible technique for fMRI investigations at submillimeter voxel widths without compromising fCNR. The reduction of partial volume averaging with nonactivated brain tissues to retain fCNR is uniquely suitable for high spatial resolution applications such as the resolving of columnar organization in the brain.

  3. Calibrating the High Density Magnetic Port within Tissue Expanders to Achieve more Accurate Dose Calculations for Postmastectomy Patients with Immediate Breast Reconstruction

    NASA Astrophysics Data System (ADS)

    Jones, Jasmine; Zhang, Rui; Heins, David; Castle, Katherine

    In postmastectomy radiotherapy, an increasing number of patients have tissue expanders inserted subpectorally when receiving immediate breast reconstruction. These tissue expanders are composed of silicone and are inflated with saline through an internal metallic port; this serves the purpose of stretching the muscle and skin tissue over time, in order to house a permanent implant. The issue with administering radiation therapy in the presence of a tissue expander is that the port's magnetic core can potentially perturb the dose delivered to the Planning Target Volume, causing significant artifacts in CT images. Several studies have explored this problem, and suggest that density corrections must be accounted for in treatment planning. However, very few studies accurately calibrated commercial TP systems for the high density material used in the port, and no studies employed fusion imaging to yield a more accurate contour of the port in treatment planning. We compared depth dose values in the water phantom between measurement and TPS calculations, and we were able to overcome some of the inhomogeneities presented by the image artifact by fusing the KVCT and MVCT images of the tissue expander together, resulting in a more precise comparison of dose calculations at discrete locations. We expect this method to be pivotal in the quantification of dose distribution in the PTV. Research funded by the LS-AMP Award.

  4. Feasibility study for reconstructing the spatial-temporal structure of TIDs from high-resolution backscatter ionograms

    NASA Astrophysics Data System (ADS)

    Nickisch, L. J.; Fridman, Sergey; Hausman, Mark; San Antonio, Geoffrey S.

    2016-05-01

    Over-the-horizon radar (OTHR) utilizes the reflective "sky wave" property of the ionosphere for high-frequency radiowaves to illuminate targets at ranges extending to several thousand kilometers. However, the ionospheric "mirror" is not static but exhibits geographic, diurnal, seasonal, and solar cycle variations. NorthWest Research Associates has developed an ionospheric data assimilation capability called Global Positioning Satellite Ionospheric Inversion (GPSII; pronounced "gypsy") that allows real-time modeling of the ionospheric structure for the purpose of accurate coordinate registration (CR; OTHR geolocation). However, the ionosphere is routinely subjected to traveling ionospheric disturbances (TIDs), and the deflection of HF sky wave signals by unmodeled TIDs remains a troubling source of CR errors (tens of kilometers). Traditional OTHR tools for ionospheric sounding (vertical and backscatter ionograms) do not resolve the fine spatial structure associated with TIDs. The collection of backscatter ionograms using the full aperture of the OTHR was recently demonstrated, thus providing enhanced resolution in radar azimuth in comparison with conventional OTHR backscatter soundings that utilize only a fraction of the OTHR receiver array. Leading edges of such backscatter ionograms demonstrate prominent spatial features associated with TIDs. We investigate the feasibility of recovering TID perturbations of ionospheric electron density from high-resolution backscatter ionograms. We incorporated a model of naturally occurring TIDs into a numerical ray tracing code that allows the generation of synthetic OTHR data. We augmented GPSII to assimilate time series of full-aperture backscatter ionogram leading edge data. Results of the simulation show that GPSII is able to reproduce the TID structure used to generate the backscatter ionograms reasonably well.

  5. High resolution/accurate mass (HRMS) detection of anatoxin-a in lake water using LDTD-APCI coupled to a Q-Exactive mass spectrometer.

    PubMed

    Roy-Lachapelle, Audrey; Solliec, Morgan; Sinotte, Marc; Deblois, Christian; Sauvé, Sébastien

    2015-01-01

    A new innovative analytical method combining ultra-fast analysis time with high resolution/accurate mass detection was developed to eliminate the misidentification of anatoxin-a (ANA-a), a cyanobacterial toxin, from the natural amino acid phenylalanine (PHE). This was achieved by using the laser diode thermal desorption-atmospheric pressure chemical ionization (LDTD-APCI) coupled to the Q-Exactive, a high resolution/accurate mass spectrometer (HRMS). This novel combination, the LDTD-APCI-HRMS, allowed for an ultra-fast analysis time (<15 s/sample). A comparison of two different acquisition modes (full scan and targeted ion fragmentation) was made to determine the most rigorous analytical method using the LDTD-APCI interface. Method development focused toward selectivity and sensitivity improvement to reduce the possibility of false positives and to lower detection limits. The Q-Exactive mass spectrometer operates with resolving powers between 17500 and 140000 FWHM (m/z 200). Nevertheless, a resolution of 17500FWHM is enough to dissociate ANA-a and PHE signals. Mass accuracy was satisfactory with values below 1 ppm reaching precision to the fourth decimal. Internal calibration with standard addition was achieved with the isotopically-labeled (D5) phenylalanine with good linearity (R(2)>0.999). Enhancement of signal to noise ratios relative to a standard triple-quadrupole method was demonstrated with lower detection and quantification limit values of 0.2 and 0.6 μg/L using the Q-Exactive. Accuracy and interday/intraday relative standard deviations were below 15%. The new method was applied to 8 different lake water samples with signs of cyanobacterial blooms. This work demonstrates the possibility of using an ultra-fast LDTD-APCI sample introduction system with an HRMS hybrid instrument for quantitative purposes with high selectivity in complex environmental matrices.

  6. Diffraction efficiency improvement in high spatial frequency holographic gratings stored in PVA/AA photopolymers: several ACPA concentrations

    NASA Astrophysics Data System (ADS)

    Fernandez, Elena; Fuentes, Rosa; Ortuño, Manuel; Beléndez, Augusto; Pascual, Inmaculada

    2015-01-01

    High spatial frequency in holographic gratings is difficult to obtain due to limitations of the recording material. In this paper, the results obtained after storing holographic transmission gratings with a spatial frequency of 2656 lines/mm in a material based on polyvinyl alcohol and acrylamide (PVA/AA) are presented. A chain transfer agent, 4, 4‧-azobis (4-cyanopentanoic acid) (ACPA) was incorporated in the composition of the material to improve the response of the material at a high spatial frequency. Different concentrations of ACPA were used in order to find the optimal concentration giving maximum diffraction efficiency for high spatial frequencies.

  7. A new regime for highly robust gamma oscillation with co-exist of accurate and weak synchronization in excitatory-inhibitory networks.

    PubMed

    Wang, Zhijie; Fan, Hong; Han, Fang

    2014-08-01

    A great number of biological experiments show that gamma oscillation occurs in many brain areas after the presentation of stimulus. The neural systems in these brain areas are highly heterogeneous. Specifically, the neurons and synapses in these neural systems are diversified; the external inputs and parameters of these neurons and synapses are heterogeneous. How the gamma oscillation generated in such highly heterogeneous networks remains a challenging problem. Aiming at this problem, a highly heterogeneous complex network model that takes account of many aspects of real neural circuits was constructed. The network model consists of excitatory neurons and fast spiking interneurons, has three types of synapses (GABAA, AMPA, and NMDA), and has highly heterogeneous external drive currents. We found a new regime for robust gamma oscillation, i.e. the oscillation in inhibitory neurons is rather accurate but the oscillation in excitatory neurons is weak, in such highly heterogeneous neural networks. We also found that the mechanism of the oscillation is a mixture of interneuron gamma (ING) and pyramidal-interneuron gamma (PING). We explained the mixture ING and PING mechanism in a consistent-way by a compound post-synaptic current, which has a slowly rising-excitatory stage and a sharp decreasing-inhibitory stage.

  8. Spatial-Temporal Dynamics of High-Resolution Animal Networks: What Can We Learn from Domestic Animals?

    PubMed Central

    Chen, Shi; Ilany, Amiyaal; White, Brad J.; Sanderson, Michael W.; Lanzas, Cristina

    2015-01-01

    Animal social network is the key to understand many ecological and epidemiological processes. We used real-time location system (RTLS) to accurately track cattle position, analyze their proximity networks, and tested the hypothesis of temporal stationarity and spatial homogeneity in these networks during different daily time periods and in different areas of the pen. The network structure was analyzed using global network characteristics (network density), subgroup clustering (modularity), triadic property (transitivity), and dyadic interactions (correlation coefficient from a quadratic assignment procedure) at hourly level. We demonstrated substantial spatial-temporal heterogeneity in these networks and potential link between indirect animal-environment contact and direct animal-animal contact. But such heterogeneity diminished if data were collected at lower spatial (aggregated at entire pen level) or temporal (aggregated at daily level) resolution. The network structure (described by the characteristics such as density, modularity, transitivity, etc.) also changed substantially at different time and locations. There were certain time (feeding) and location (hay) that the proximity network structures were more consistent based on the dyadic interaction analysis. These results reveal new insights for animal network structure and spatial-temporal dynamics, provide more accurate descriptions of animal social networks, and allow more accurate modeling of multiple (both direct and indirect) disease transmission pathways. PMID:26107251

  9. High spatial resolution characterization of silicon solar cells using thermoreflectance imaging

    NASA Astrophysics Data System (ADS)

    Zhou, Qiaoer; Hu, Xiaolin; Al-Hemyari, Kadhair; McCarthy, Kevin; Domash, Lawrence; Hudgings, Janice A.

    2011-09-01

    Thermoreflectance imaging is shown to be a high resolution, non-contact method of quantitatively characterizing device performance and identifying electrical shunts in conventional multicrystalline silicon solar cells. Results are in quantitative agreement with a commercial lock-in infrared thermography system but offer an order of magnitude improvement in spatial resolution. Highly resolved thermoreflectance imaging enables extraction of quantitative, spatially resolved device performance characteristics, including local IV curves and local diode ideality factors, offering detailed physical characterization of performance-limiting defects that cannot be obtained from conventional bulk cell testing. Finally, thermoreflectance maps of heat spreading from a point defect provide a simple means of quantifying thermal parameters such as thermal diffusivity and thermal conductivity, which are key field performance indicators.

  10. Distinguishing and quantification of the human visual pathways using high-spatial-resolution diffusion tensor tractography.

    PubMed

    Kamali, Arash; Hasan, Khader M; Adapa, Pavani; Razmandi, Azadeh; Keser, Zafer; Lincoln, John; Kramer, Larry A

    2014-09-01

    Quantification of the living human visual system using MRI methods has been challenging, but several applications demand a reliable and time-efficient data acquisition protocol. In this study, we demonstrate the utility of high-spatial-resolution diffusion tensor fiber tractography (DTT) in reconstructing and quantifying the human visual pathways. Five healthy males, age range 24-37years, were studied after approval of the institutional review board (IRB) at The University of Texas Health Science Center at Houston. We acquired diffusion tensor imaging (DTI) data with 1-mm slice thickness on a 3.0-Tesla clinical MRI scanner and analyzed the data using DTT with the fiber assignment by continuous tractography (FACT) algorithm. By utilizing the high-spatial-resolution DTI protocol with FACT algorithm, we were able to reconstruct and quantify bilateral optic pathways including the optic chiasm, optic tract, optic radiations free of contamination from neighboring white matter tracts.

  11. Distinguishing and quantification of the human visual pathways using high spatial resolution diffusion tensor tractography

    PubMed Central

    Kamali, Arash; Hasan, Khader M.; Adapa, Pavani; Razmandi, Azadeh; Keser, Zafer; Lincoln, John; Kramer, Larry A.

    2014-01-01

    Quantification of the living human visual system using MRI methods has been challenging, but several applications demand a reliable and time-efficient data acquisition protocol. In this study, we demonstrate the utility of high spatial resolution diffusion tensor fiber tractography (DTT) in reconstructing and quantifying the human visual pathways. Five healthy males, age range 24–37 years, were studied after approval of the Institutional Review Board (IRB) at The University of Texas Health Science Center at Houston. We acquired diffusion tensor imaging (DTI) data with 1-mm slice thickness on a 3.0 Tesla clinical MRI scanner and analyzed the data using DTT with the fiber assignment by continuous tractography (FACT) algorithm. By utilizing the high spatial resolution DTI protocol with FACT algorithm, we were able to reconstruct and quantify bilateral optic pathways including the optic chiasm, optic tract, optic radiations free of contamination from neighboring white matter tracts. PMID:24856625

  12. The application of high spectral and spatial resolution imaging spectrometers for locating downed aircraft

    NASA Technical Reports Server (NTRS)

    Gatlin, James A.; Middleton, Elizabeth M.; Irons, James R.; Robinson, Jon W.

    1991-01-01

    The utility of high-resolution imaging spectrometer data is examined as an aid in locating downed aircraft by using a unique spectral signature while not requiring the extremely high spatial resolution needed to identify an aircraft by shape. Ground spectral measurements of several airplane wings, overflight spectral measurements of aircraft scenes, and the rationale for the chosen spectral signature are presented. It is concluded that imaging spectrometers which can detect and spatially locate a narrow-band spectral signature filling only a few pixels appear to have a utility for search and rescue aircraft or satellite systems as a aid in locating small downed aircraft. This spectral feature would have to be added to the surface coatings applied to aircraft. Proposed for use as such a spectral signature is a significant negative reflectance slope, in the 520 to 580 nm interval.

  13. Measurement of residual stresses on ceramic materials with high spatial resolution

    SciTech Connect

    Kozaczek, K.J.; Ruud, C.O.; Fitting, J.D.

    1993-12-31

    A fast x-ray diffraction technique has been developed for measuring the residual stresses with high spatial resolution in ceramic materials. This resolution is limited by the mean size of grains and the radiation type. The effective diffraction elastic constants were experimentally determined for alumina as (E/l+{nu})){sub (1016)} = 200 GPa. The accuracy of XRD measurement of residual stresses with the spatial resolution of 170 {mu}m and precision {plus_minus} 15 MPa was verified experimentally by strain gauge measurements. The stress field around a singular Kovar pin brazed to alumina was asymmetric with high tangential stresses in the vicinity of the pin decreasing with the distance from the pin.

  14. Measurement Sets and Sites Commonly Used for High Spatial Resolution Image Product Characterization

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary

    2006-01-01

    Scientists within NASA's Applied Sciences Directorate have developed a well-characterized remote sensing Verification & Validation (V&V) site at the John C. Stennis Space Center (SSC). This site has enabled the in-flight characterization of satellite high spatial resolution remote sensing system products form Space Imaging IKONOS, Digital Globe QuickBird, and ORBIMAGE OrbView, as well as advanced multispectral airborne digital camera products. SSC utilizes engineered geodetic targets, edge targets, radiometric tarps, atmospheric monitoring equipment and their Instrument Validation Laboratory to characterize high spatial resolution remote sensing data products. This presentation describes the SSC characterization capabilities and techniques in the visible through near infrared spectrum and examples of calibration results.

  15. Characterization of spatially resolved high resolution x-ray spectrometers for high energy density physics and light source experiments

    SciTech Connect

    Hill, K. W. Bitter, M.; Delgado-Aparacio, L.; Efthimion, P.; Pablant, N. A.; Lu, J.; Beiersdorfer, P.; Chen, H.; Magee, E.

    2014-11-15

    A high resolution 1D imaging x-ray spectrometer concept comprising a spherically bent crystal and a 2D pixelated detector is being optimized for diagnostics of small sources such as high energy density physics (HEDP) and synchrotron radiation or x-ray free electron laser experiments. This instrument is used on tokamak experiments for Doppler measurements of ion temperature and plasma flow velocity profiles. Laboratory measurements demonstrate a resolving power, E/ΔE of order 10 000 and spatial resolution better than 10 μm. Initial tests of the high resolution instrument on HEDP plasmas are being performed.

  16. Proteohistography--direct analysis of tissue with high sensitivity and high spatial resolution using ProteinChip technology.

    PubMed

    Ernst, Günther; Melle, Christian; Schimmel, Bettina; Bleul, Annett; von Eggeling, Ferdinand

    2006-01-01

    On the proteomic level, all tissues, tissue constituents, or even single cells are heterogeneous, but the biological relevance of this cannot be adequately investigated with any currently available technique. The analysis of proteins of small tissue areas by any proteomic approach is limited by the number of required cells. Increasing the number of cells only serves to lower the spatial resolution of expressed proteins. To enhance sensitivity and spatial resolution we developed Proteohistography. Laser microdissection was used to mark special areas of interest on tissue sections attached to glass slides. These areas were positioned under microscopic control directly on an affinity chromatographic ProteinChip Array so that cells were lysed and their released proteins bound on a spatially defined point. The ProteinChip System, surface enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF-MS), allows the laser to be steered to up to 215 distinct positions across the surface of the spot, enabling a high spatial resolution of measured protein profiles for the analyzed tissue area. Protein profiles of the single positions were visually plotted over the used tissue section to visualize distribution proteohistologically. Results show that the spatial distribution of detectable proteins could be used as a Proteohistogram for a given tissue area. Consequently, this procedure can provide additional information to both a matrix-assisted laser desorption/ionization (MALDI)-based approach and immunohistochemistry, as it is more sensitive, highly quantitative, and no specific antibody is needed. Hence, proteomic heterogeneity can be visualized even if proteins are not known or identified. PMID:16148310

  17. High-order harmonic emission in bowtie-shaped nanostructure with few-cycle spatially inhomogeneous laser fields when the atom is placed at different spatial positions

    NASA Astrophysics Data System (ADS)

    Luo, Xiang-Yi; Wang, Tian; Wang, Qun; Liu, Xue-Shen

    2016-11-01

    In this study, we investigate the harmonic spectra in the vicinity of the center of the nanostructure gap when helium atom is placed at different spatial positions. We find that the high-order harmonic spectra is very sensitive to the atomic spatial positions in a inhomogeneous laser field. When the initial atomic spatial position is changed from  ‑9.0 a.u. to 9.0 a.u., the cutoff of the high-order harmonic generation (HHG) can be extended, and the supercontinuum harmonic spectrum of the second plateau is extended to the high-order and the low-order simultaneously. The HHG process is demonstrated by using the time-frequency analysis, the semi-classical three-step model and the ionization probability.

  18. A comparative analysis of two highly spatially resolved European atmospheric emission inventories

    NASA Astrophysics Data System (ADS)

    Ferreira, J.; Guevara, M.; Baldasano, J. M.; Tchepel, O.; Schaap, M.; Miranda, A. I.; Borrego, C.

    2013-08-01

    A reliable emissions inventory is highly important for air quality modelling applications, especially at regional or local scales, which require high resolutions. Consequently, higher resolution emission inventories have been developed that are suitable for regional air quality modelling. This research performs an inter-comparative analysis of different spatial disaggregation methodologies of atmospheric emission inventories. This study is based on two different European emission inventories with different spatial resolutions: 1) the EMEP (European Monitoring and Evaluation Programme) inventory and 2) an emission inventory developed by the TNO (Netherlands Organisation for Applied Scientific Research). These two emission inventories were converted into three distinct gridded emission datasets as follows: (i) the EMEP emission inventory was disaggregated by area (EMEParea) and (ii) following a more complex methodology (HERMES-DIS - High-Elective Resolution Modelling Emissions System - DISaggregation module) to understand and evaluate the influence of different disaggregation methods; and (iii) the TNO gridded emissions, which are based on different emission data sources and different disaggregation methods. A predefined common grid with a spatial resolution of 12 × 12 km2 was used to compare the three datasets spatially. The inter-comparative analysis was performed by source sector (SNAP - Selected Nomenclature for Air Pollution) with emission totals for selected pollutants. It included the computation of difference maps (to focus on the spatial variability of emission differences) and a linear regression analysis to calculate the coefficients of determination and to quantitatively measure differences. From the spatial analysis, greater differences were found for residential/commercial combustion (SNAP02), solvent use (SNAP06) and road transport (SNAP07). These findings were related to the different spatial disaggregation that was conducted by the TNO and HERMES

  19. Radiometric Calibration Assessment of Commercial High Spatial Resolution Multispectral Image Products

    NASA Technical Reports Server (NTRS)

    Thome, Kurt; Leisso, Nathan; Buchanan, John

    2007-01-01

    This paper describes the results of commercial high spatial resolution sensors. The topics include: 1) Reflectance-based approach; 2) U of A test sites; 3) Test Site Selection; 4) Resort Living; 5) Aerosol parameters; 6) Surface reflectance retrieval; 7) Accuracy/precision; 8) Data sets; 9) June 23, 2005 for Ikonos; 10) QuickBird Results; 11) Ikonos results; 12) Orbview results; 13) Ikonos redux; and 14) Overall results.

  20. High-Q polymer resonators with spatially controlled photo-functionalization for biosensing applications

    NASA Astrophysics Data System (ADS)

    Beck, Torsten; Mai, Martin; Grossmann, Tobias; Wienhold, Tobias; Hauser, Mario; Mappes, Timo; Kalt, Heinz

    2013-03-01

    We demonstrate the applicability of polymeric whispering gallery mode resonators fabricated on silicon as biosensors. Optical measurements on the passive resonators in the visible spectral range yield Q-factors as high as 1.3×107. Local, covalent surface functionalization, is achieved by spatially controlled UV-exposure of a derivative of the photoreactive crosslinker benzophenone. Protein detection is shown using the specific binding of the biotin-streptavidin system.

  1. Geostatistics for high resolution geomorphometry: from spatial continuity to surface texture

    NASA Astrophysics Data System (ADS)

    Trevisani, Sebastiano

    2015-04-01

    This presentation introduces the use of geostatistics in the context of high-resolution geomorphometry. The application of geostatistics to geomorphometry permits a shift in perspective, moving our attention more toward spatial continuity description than toward the inference of a spatial continuity model. This change in perspective opens interesting directions in the application of geostatistical methods in geomorphometry. Geostatistical methodologies have been extensively applied and adapted in the context of remote sensing, leading to many interesting applications aimed at the analysis of the complex patterns characterizing imagery. Among these applications the analysis of image texture has to be mentioned. In fact, the analysis of image texture reverts to the analysis of surface texture when the analyzed image is a raster representation of a digital terrain model. The main idea is to use spatial-continuity indices as multiscale and directional descriptors of surface texture, including the important aspect related to surface roughness. In this context we introduce some examples regarding the application of geostatistics for image analysis and surface texture characterization. We also show as in presence of complex morphological settings there is the need to use alternative indices of spatial continuity, less sensitive to hotspots and to non-stationarity that often characterize surface morphology. This introduction is mainly dedicated to univariate geostatistics; however the same concepts could be exploited by means of multivariate as well as multipoint geostatistics.

  2. Improvement of the temporal and spatial contrast of high-brightness laser beams

    NASA Astrophysics Data System (ADS)

    Szatmári, S.; Dajka, R.; Barna, A.; Gilicze, B.; Földes, I. B.

    2016-07-01

    A novel method is suggested for temporal and spatial cleaning of high-brightness laser pulses, which seems more energy-scalable than that based on crossed polarizers and offers better contrast improvement compared to the plasma mirror technique. The suggested arrangement utilizes nonlinear modulation of the beam in the Fourier-plane leading both to directional and to temporal modulation. By the use of a ‘conjugate’ aperture arrangement before and after the nonlinear spatial selector, intensity dependent transmission is obtained; simultaneous temporal and spatial filtering can be realized both for amplitude and phase modulation. In the case of phase modulation introduced by plasma generation in noble gases the experimental observations are in good agreement with the theory; demonstrating  >103 improvement in the temporal contrast, ~40% throughput, associated with effective spatial filtering. Due to the broad spectral and power durability of the optical arrangement used here, the method is widely applicable for energetic beams even of UV wavelengths, where most of the former techniques have limited throughput.

  3. Accurate mass analysis of ethanesulfonic acid degradates of acetochlor and alachlor using high-performance liquid chromatography and time-of-flight mass spectrometry

    USGS Publications Warehouse

    Thurman, E.M.; Ferrer, I.; Parry, R.

    2002-01-01

    Degradates of acetochlor and alachlor (ethanesulfonic acids, ESAs) were analyzed in both standards and in a groundwater sample using high-performance liquid chromatography-time-of-flight mass spectrometry with electrospray ionization. The negative pseudomolecular ion of the secondary amide of acetochlor ESA and alachlor ESA gave average masses of 256.0750??0.0049 amu and 270.0786??0.0064 amu respectively. Acetochlor and alachlor ESA gave similar masses of 314.1098??0.0061 amu and 314.1153??0.0048 amu; however, they could not be distinguished by accurate mass because they have the same empirical formula. On the other hand, they may be distinguished using positive-ion electrospray because of different fragmentation spectra, which did not occur using negative-ion electrospray.

  4. Accurate Monte Carlo simulations on FCC and HCP Lennard-Jones solids at very low temperatures and high reduced densities up to 1.30.

    PubMed

    Adidharma, Hertanto; Tan, Sugata P

    2016-07-01

    Canonical Monte Carlo simulations on face-centered cubic (FCC) and hexagonal closed packed (HCP) Lennard-Jones (LJ) solids are conducted at very low temperatures (0.10 ≤ T(∗) ≤ 1.20) and high densities (0.96 ≤ ρ(∗) ≤ 1.30). A simple and robust method is introduced to determine whether or not the cutoff distance used in the simulation is large enough to provide accurate thermodynamic properties, which enables us to distinguish the properties of FCC from that of HCP LJ solids with confidence, despite their close similarities. Free-energy expressions derived from the simulation results are also proposed, not only to describe the properties of those individual structures but also the FCC-liquid, FCC-vapor, and FCC-HCP solid phase equilibria.

  5. Accurate Monte Carlo simulations on FCC and HCP Lennard-Jones solids at very low temperatures and high reduced densities up to 1.30

    NASA Astrophysics Data System (ADS)

    Adidharma, Hertanto; Tan, Sugata P.

    2016-07-01

    Canonical Monte Carlo simulations on face-centered cubic (FCC) and hexagonal closed packed (HCP) Lennard-Jones (LJ) solids are conducted at very low temperatures (0.10 ≤ T∗ ≤ 1.20) and high densities (0.96 ≤ ρ∗ ≤ 1.30). A simple and robust method is introduced to determine whether or not the cutoff distance used in the simulation is large enough to provide accurate thermodynamic properties, which enables us to distinguish the properties of FCC from that of HCP LJ solids with confidence, despite their close similarities. Free-energy expressions derived from the simulation results are also proposed, not only to describe the properties of those individual structures but also the FCC-liquid, FCC-vapor, and FCC-HCP solid phase equilibria.

  6. Practical method for highly accurate large-scale surface calculations. [of linearized muffin-tin orbital technique for chemisorption and magnetism

    NASA Technical Reports Server (NTRS)

    Fernando, G. W.; Cooper, B. R.; Ramana, M. V.; Krakauer, H.; Ma, C. Q.

    1986-01-01

    An accurate and efficient film linearized muffin-tin orbital (FLMTO) technique for surface electronic-structure calculations is presented which uses only 60-70 basis functions, as opposed to the 300 functions used in the linear augmented plane-wave method. Calculations for three different (3d and 4d) transition-metal films resulted in high quality results for five-layer slabs of Cu(001), Fe(001), and Ru(001), in addition to good results for the work functions and projected density of states. By retaining the LMTO small basis size, computer time and memory are reduced, making practical the study of systems with a larger number of atoms in the two-dimensional unit cell.

  7. Argon Cluster Sputtering Source for ToF-SIMS Depth Profiling of Insulating Materials: High Sputter Rate and Accurate Interfacial Information.

    PubMed

    Wang, Zhaoying; Liu, Bingwen; Zhao, Evan W; Jin, Ke; Du, Yingge; Neeway, James J; Ryan, Joseph V; Hu, Dehong; Zhang, Kelvin H L; Hong, Mina; Le Guernic, Solenne; Thevuthasan, Suntharampilai; Wang, Fuyi; Zhu, Zihua

    2015-08-01

    The use of an argon cluster ion sputtering source has been demonstrated to perform superiorly relative to traditional oxygen and cesium ion sputtering sources for ToF-SIMS depth profiling of insulating materials. The superior performance has been attributed to effective alleviation of surface charging. A simulated nuclear waste glass (SON68) and layered hole-perovskite oxide thin films were selected as model systems because of their fundamental and practical significance. Our results show that high sputter rates and accurate interfacial information can be achieved simultaneously for argon cluster sputtering, whereas this is not the case for cesium and oxygen sputtering. Therefore, the implementation of an argon cluster sputtering source can significantly improve the analysis efficiency of insulating materials and, thus, can expand its applications to the study of glass corrosion, perovskite oxide thin film characterization, and many other systems of interest.

  8. Assessing spatial heterogeneity of multidrug-resistant tuberculosis in a high-burden country.

    PubMed

    Jenkins, Helen E; Plesca, Valeriu; Ciobanu, Anisoara; Crudu, Valeriu; Galusca, Irina; Soltan, Viorel; Serbulenco, Aliona; Zignol, Matteo; Dadu, Andrei; Dara, Masoud; Cohen, Ted

    2013-11-01

    Multidrug-resistant tuberculosis (MDR-TB) is a major concern in countries of the former Soviet Union. The reported risk of resistance among tuberculosis (TB) cases in the Republic of Moldova is among the highest in the world. We aimed to produce high-resolution spatial maps of MDR-TB risk and burden in this setting. We analysed national TB surveillance data collected between 2007 and 2010 in Moldova. High drug susceptibility testing coverage and detailed location data permitted identification of subregional areas of higher MDR-TB risk. We investigated whether the distribution of cases with MDR-TB risk factors could explain this observed spatial variation in MDR-TB. 3447 MDR-TB cases were notified during this period; 24% of new and 62% of previously treated patients had MDR-TB. Nationally, the estimated annual MDR-TB incidence was 54 cases per 100 000 persons and >1000 cases per 100 000 persons within penitentiaries. We identified substantial geographical variation in MDR-TB burden and hotspots of MDR-TB. Locations with a higher percentage of previously incarcerated TB cases were at greater risk of being MDR-TB hotspots. Spatial analyses revealed striking geographical heterogeneity of MDR-TB. Methods to identify locations of high MDR-TB risk and burden should allow for better resource allocation and more appropriate targeting of studies to understand local mechanisms driving resistance. PMID:23100496

  9. Assessing spatial heterogeneity of multidrug-resistant tuberculosis in a high-burden country.

    PubMed

    Jenkins, Helen E; Plesca, Valeriu; Ciobanu, Anisoara; Crudu, Valeriu; Galusca, Irina; Soltan, Viorel; Serbulenco, Aliona; Zignol, Matteo; Dadu, Andrei; Dara, Masoud; Cohen, Ted

    2013-11-01

    Multidrug-resistant tuberculosis (MDR-TB) is a major concern in countries of the former Soviet Union. The reported risk of resistance among tuberculosis (TB) cases in the Republic of Moldova is among the highest in the world. We aimed to produce high-resolution spatial maps of MDR-TB risk and burden in this setting. We analysed national TB surveillance data collected between 2007 and 2010 in Moldova. High drug susceptibility testing coverage and detailed location data permitted identification of subregional areas of higher MDR-TB risk. We investigated whether the distribution of cases with MDR-TB risk factors could explain this observed spatial variation in MDR-TB. 3447 MDR-TB cases were notified during this period; 24% of new and 62% of previously treated patients had MDR-TB. Nationally, the estimated annual MDR-TB incidence was 54 cases per 100 000 persons and >1000 cases per 100 000 persons within penitentiaries. We identified substantial geographical variation in MDR-TB burden and hotspots of MDR-TB. Locations with a higher percentage of previously incarcerated TB cases were at greater risk of being MDR-TB hotspots. Spatial analyses revealed striking geographical heterogeneity of MDR-TB. Methods to identify locations of high MDR-TB risk and burden should allow for better resource allocation and more appropriate targeting of studies to understand local mechanisms driving resistance.

  10. Design and performance of a high spatial resolution, time-of-flight PET detector

    PubMed Central

    Krishnamoorthy, Srilalan; LeGeyt, Benjamin; Werner, Matthew E.; Kaul, Madhuri; Newcomer, F. M.; Karp, Joel S.; Surti, Suleman

    2014-01-01

    This paper describes the design and performance of a high spatial resolution PET detector with time-of-flight capabilities. With an emphasis on high spatial resolution and sensitivity, we initially evaluated the performance of several 1.5 × 1.5 and 2.0 × 2.0 mm2 and 12–15 mm long LYSO crystals read out by several appropriately sized PMTs. Experiments to evaluate the impact of reflector on detector performance were performed and the final detector consisted of a 32 × 32 array of 1.5 × 1.5 × 15 mm3 LYSO crystals packed with a diffuse reflector and read out by a single Hamamatsu 64 channel multi-anode PMT. Such a design made it compact, modular and offered a cost-effective solution to obtaining excellent energy and timing resolution. To minimize the number of readout signals, a compact front-end readout electronics that summed anode signals along each of the orthogonal directions was also developed. Experimental evaluation of detector performance demonstrates clear discrimination of the crystals within the detector. An average energy resolution (FWHM) of 12.7 ± 2.6% and average coincidence timing resolution (FWHM) of 348 ps was measured, demonstrating suitability for use in the development of a high spatial resolution time-of-flight scanner for dedicated breast PET imaging. PMID:25246711

  11. High-throughput amplicon sequencing of rRNA genes requires a copy number correction to accurately reflect the effects of management practices on soil nematode community structure.

    PubMed

    Darby, B J; Todd, T C; Herman, M A

    2013-11-01

    Nematodes are abundant consumers in grassland soils, but more sensitive and specific methods of enumeration are needed to improve our understanding of how different nematode species affect, and are affected by, ecosystem processes. High-throughput amplicon sequencing is used to enumerate microbial and invertebrate communities at a high level of taxonomic resolution, but the method requires validation against traditional specimen-based morphological identifications. To investigate the consistency between these approaches, we enumerated nematodes from a 25-year field experiment using both morphological and molecular identification techniques in order to determine the long-term effects of annual burning and nitrogen enrichment on soil nematode communities. Family-level frequencies based on amplicon sequencing were not initially consistent with specimen-based counts, but correction for differences in rRNA gene copy number using a genetic algorithm improved quantitative accuracy. Multivariate analysis of corrected sequence-based abundances of nematode families was consistent with, but not identical to, analysis of specimen-based counts. In both cases, herbivores, fungivores and predator/omnivores generally were more abundant in burned than nonburned plots, while bacterivores generally were more abundant in nonburned or nitrogen-enriched plots. Discriminate analysis of sequence-based abundances identified putative indicator species representing each trophic group. We conclude that high-throughput amplicon sequencing can be a valuable method for characterizing nematode communities at high taxonomic resolution as long as rRNA gene copy number variation is accounted for and accurate sequence databases are available. PMID:24103081

  12. High IFIT1 expression predicts improved clinical outcome, and IFIT1 along with MGMT more accurately predicts prognosis in newly diagnosed glioblastoma.

    PubMed

    Zhang, Jin-Feng; Chen, Yao; Lin, Guo-Shi; Zhang, Jian-Dong; Tang, Wen-Long; Huang, Jian-Huang; Chen, Jin-Shou; Wang, Xing-Fu; Lin, Zhi-Xiong

    2016-06-01

    Interferon-induced protein with tetratricopeptide repeat 1 (IFIT1) plays a key role in growth suppression and apoptosis promotion in cancer cells. Interferon was reported to induce the expression of IFIT1 and inhibit the expression of O-6-methylguanine-DNA methyltransferase (MGMT).This study aimed to investigate the expression of IFIT1, the correlation between IFIT1 and MGMT, and their impact on the clinical outcome in newly diagnosed glioblastoma. The expression of IFIT1 and MGMT and their correlation were investigated in the tumor tissues from 70 patients with newly diagnosed glioblastoma. The effects on progression-free survival and overall survival were evaluated. Of 70 cases, 57 (81.4%) tissue samples showed high expression of IFIT1 by immunostaining. The χ(2) test indicated that the expression of IFIT1 and MGMT was negatively correlated (r = -0.288, P = .016). Univariate and multivariate analyses confirmed high IFIT1 expression as a favorable prognostic indicator for progression-free survival (P = .005 and .017) and overall survival (P = .001 and .001), respectively. Patients with 2 favorable factors (high IFIT1 and low MGMT) had an improved prognosis as compared with others. The results demonstrated significantly increased expression of IFIT1 in newly diagnosed glioblastoma tissue. The negative correlation between IFIT1 and MGMT expression may be triggered by interferon. High IFIT1 can be a predictive biomarker of favorable clinical outcome, and IFIT1 along with MGMT more accurately predicts prognosis in newly diagnosed glioblastoma. PMID:26980050

  13. High-throughput amplicon sequencing of rRNA genes requires a copy number correction to accurately reflect the effects of management practices on soil nematode community structure.

    PubMed

    Darby, B J; Todd, T C; Herman, M A

    2013-11-01

    Nematodes are abundant consumers in grassland soils, but more sensitive and specific methods of enumeration are needed to improve our understanding of how different nematode species affect, and are affected by, ecosystem processes. High-throughput amplicon sequencing is used to enumerate microbial and invertebrate communities at a high level of taxonomic resolution, but the method requires validation against traditional specimen-based morphological identifications. To investigate the consistency between these approaches, we enumerated nematodes from a 25-year field experiment using both morphological and molecular identification techniques in order to determine the long-term effects of annual burning and nitrogen enrichment on soil nematode communities. Family-level frequencies based on amplicon sequencing were not initially consistent with specimen-based counts, but correction for differences in rRNA gene copy number using a genetic algorithm improved quantitative accuracy. Multivariate analysis of corrected sequence-based abundances of nematode families was consistent with, but not identical to, analysis of specimen-based counts. In both cases, herbivores, fungivores and predator/omnivores generally were more abundant in burned than nonburned plots, while bacterivores generally were more abundant in nonburned or nitrogen-enriched plots. Discriminate analysis of sequence-based abundances identified putative indicator species representing each trophic group. We conclude that high-throughput amplicon sequencing can be a valuable method for characterizing nematode communities at high taxonomic resolution as long as rRNA gene copy number variation is accounted for and accurate sequence databases are available.

  14. Reconciling nature conservation and traditional farming practices: a spatially explicit framework to assess the extent of High Nature Value farmlands in the European countryside.

    PubMed

    Lomba, Angela; Alves, Paulo; Jongman, Rob H G; McCracken, David I

    2015-03-01

    Agriculture constitutes a dominant land cover worldwide, and rural landscapes under extensive farming practices acknowledged due to high biodiversity levels. The High Nature Value farmland (HNVf) concept has been highlighted in the EU environmental and rural policies due to their inherent potential to help characterize and direct financial support to European landscapes where high nature and/or conservation value is dependent on the continuation of specific low-intensity farming systems. Assessing the extent of HNV farmland by necessity relies on the availability of both ecological and farming systems' data, and difficulties associated with making such assessments have been widely described across Europe. A spatially explicit framework of data collection, building out from local administrative units, has recently been suggested as a means of addressing such difficulties. This manuscript tests the relevance of the proposed approach, describes the spatially explicit framework in a case study area in northern Portugal, and discusses the potential of the approach to help better inform the implementation of conservation and rural development policies. Synthesis and applications: The potential of a novel approach (combining land use/cover, farming and environmental data) to provide more accurate and efficient mapping and monitoring of HNV farmlands is tested at the local level in northern Portugal. The approach is considered to constitute a step forward toward a more precise targeting of landscapes for agri-environment schemes, as it allowed a more accurate discrimination of areas within the case study landscape that have a higher value for nature conservation.

  15. Repeatable, accurate, and high speed multi-level programming of memristor 1T1R arrays for power efficient analog computing applications.

    PubMed

    Merced-Grafals, Emmanuelle J; Dávila, Noraica; Ge, Ning; Williams, R Stanley; Strachan, John Paul

    2016-09-01

    Beyond use as high density non-volatile memories, memristors have potential as synaptic components of neuromorphic systems. We investigated the suitability of tantalum oxide (TaOx) transistor-memristor (1T1R) arrays for such applications, particularly the ability to accurately, repeatedly, and rapidly reach arbitrary conductance states. Programming is performed by applying an adaptive pulsed algorithm that utilizes the transistor gate voltage to control the SET switching operation and increase programming speed of the 1T1R cells. We show the capability of programming 64 conductance levels with <0.5% average accuracy using 100 ns pulses and studied the trade-offs between programming speed and programming error. The algorithm is also utilized to program 16 conductance levels on a population of cells in the 1T1R array showing robustness to cell-to-cell variability. In general, the proposed algorithm results in approximately 10× improvement in programming speed over standard algorithms that do not use the transistor gate to control memristor switching. In addition, after only two programming pulses (an initialization pulse followed by a programming pulse), the resulting conductance values are within 12% of the target values in all cases. Finally, endurance of more than 10(6) cycles is shown through open-loop (single pulses) programming across multiple conductance levels using the optimized gate voltage of the transistor. These results are relevant for applications that require high speed, accurate, and repeatable programming of the cells such as in neural networks and analog data processing.

  16. Repeatable, accurate, and high speed multi-level programming of memristor 1T1R arrays for power efficient analog computing applications.

    PubMed

    Merced-Grafals, Emmanuelle J; Dávila, Noraica; Ge, Ning; Williams, R Stanley; Strachan, John Paul

    2016-09-01

    Beyond use as high density non-volatile memories, memristors have potential as synaptic components of neuromorphic systems. We investigated the suitability of tantalum oxide (TaOx) transistor-memristor (1T1R) arrays for such applications, particularly the ability to accurately, repeatedly, and rapidly reach arbitrary conductance states. Programming is performed by applying an adaptive pulsed algorithm that utilizes the transistor gate voltage to control the SET switching operation and increase programming speed of the 1T1R cells. We show the capability of programming 64 conductance levels with <0.5% average accuracy using 100 ns pulses and studied the trade-offs between programming speed and programming error. The algorithm is also utilized to program 16 conductance levels on a population of cells in the 1T1R array showing robustness to cell-to-cell variability. In general, the proposed algorithm results in approximately 10× improvement in programming speed over standard algorithms that do not use the transistor gate to control memristor switching. In addition, after only two programming pulses (an initialization pulse followed by a programming pulse), the resulting conductance values are within 12% of the target values in all cases. Finally, endurance of more than 10(6) cycles is shown through open-loop (single pulses) programming across multiple conductance levels using the optimized gate voltage of the transistor. These results are relevant for applications that require high speed, accurate, and repeatable programming of the cells such as in neural networks and analog data processing. PMID:27479054

  17. High spatial resolution remote sensing imagery improves GPP predictions in disturbed, semi-arid woodlands

    NASA Astrophysics Data System (ADS)

    Krofcheck, D. J.; Eitel, J.; Vierling, L. A.; Schulthess, U.; Litvak, M. E.

    2012-12-01

    Climate across the globe is changing and consequently the productivity of terrestrial vegetation is changing with it. Gross primary productivity (GPP) is an integral part of the carbon cycle, yet challenging to measure everywhere, all the time. Efforts to estimate GPP in the context of climate change are becoming continually more salient of the need for models sensitive to the heterogeneous nature of drought and pest induced disturbance. Given the increased availability of high spatial resolution remotely sensed imagery, their use in ecosystem scale GPP estimation is becoming increasingly viable. We used a simple linear model with inputs derived from RapidEye time series data (5 meter spatial resolution) as compared to MODIS inputs (250 meter spatial resolution) to estimate GPP in intact and girdled PJ woodland to simulate drought and pest induced disturbance. An area equal to the MODIS pixels measured was aggregated using RapidEye data centered on the flux towers for comparison purposes. We generated four model runs, two using only MODIS or RapidEye spectral vegetation indices (VIs) and two using MODIS and RapidEye VIs combined at both the control and disturbed tower site. Our results suggest that for undisturbed regions, MODIS derived VIs perform better than the higher spatial resolution RapidEye VIs when a moisture sensitive index is incorporated into the model (RMSE of 17.51for MODIS vs. 22.71 for RapidEye). Modeling GPP in disturbed regions however benefits from the inclusion of high spatial resolution data (RMSE of 14.83 for MODIS vs. 14.70 for RapidEye). This discrepancy may have to do with the disparate scale of a MODIS pixel and the size of the tower fetch. Our results suggest that the best source of VI's for the modeling GPP in semi-arid woodlands depends on the level of disturbance in the landscape. Given that the rate and extent of drought and insect induced mortality events in terrestrial forests are projected to increase with our changing climate

  18. An object-based approach to delineate wetlands across landscapes of varied disturbance with high spatial resolution satellite imagery

    NASA Astrophysics Data System (ADS)

    Mui, Amy; He, Yuhong; Weng, Qihao

    2015-11-01

    Mapping wetlands across both natural and human-altered landscapes is important for the management of these ecosystems. Though they are considered important landscape elements providing both ecological and socioeconomic benefits, accurate wetland inventories do not exist in many areas. In this study, a multi-scale geographic object-based image analysis (GEOBIA) approach was employed to segment three high spatial resolution images acquired over landscapes of varying heterogeneity due to human-disturbance to determine the robustness of this method to changing scene variability. Multispectral layers, a digital elevation layer, normalized-difference vegetation index (NDVI) layer, and a first-order texture layer were used to segment images across three segmentation scales with a focus on accurate delineation of wetland boundaries and wetland components. Each ancillary input layer contributed to improving segmentation at different scales. Wetlands were classified using a nearest neighbor approach across a relatively undisturbed park site and an agricultural site using GeoEye1 imagery, and an urban site using WorldView2 data. Successful wetland classification was achieved across all study sites with an accuracy above 80%, though results suggest that overall a higher degree of landscape heterogeneity may negatively affect both segmentation and classification. The agricultural site suffered from the greatest amount of over and under segmentation, and lowest map accuracy (kappa: 0.78) which was partially attributed to confusion among a greater proportion of mixed vegetated classes from both wetlands and uplands. Accuracy of individual wetland classes based on the Canadian Wetland Classification system varied between each site, with kappa values ranging from 0.64 for the swamp class and 0.89 for the marsh class. This research developed a unique approach to mapping wetlands of various degrees of disturbance using GEOBIA, which can be applied to study other wetlands of similar

  19. Spatial Cognition in Adult and Aged Mice Exposed to High-Fat Diet.

    PubMed

    Kesby, James P; Kim, Jane J; Scadeng, Miriam; Woods, Gina; Kado, Deborah M; Olefsky, Jerrold M; Jeste, Dilip V; Achim, Cristian L; Semenova, Svetlana

    2015-01-01

    Aging is associated with a decline in multiple aspects of cognitive function, with spatial cognition being particularly sensitive to age-related decline. Environmental stressors, such as high-fat diet (HFD) exposure, that produce a diabetic phenotype and metabolic dysfunction may indirectly lead to exacerbated brain aging and promote the development of cognitive deficits. The present work investigated whether exposure to HFD exacerbates age-related cognitive deficits in adult versus aged mice. Adult (5 months old) and aged (15 months old) mice were exposed to control diet or HFD for three months prior to, and throughout, behavioral testing. Anxiety-like behavior in the light-dark box test, discrimination learning and memory in the novel object/place recognition tests, and spatial learning and memory in the Barnes maze test were assessed. HFD resulted in significant gains in body weight and fat mass content with adult mice gaining significantly more weight and adipose tissue due to HFD than aged mice. Weight gain was attributed to food calories sourced from fat, but not total calorie intake. HFD increased fasting insulin levels in all mice, but adult mice showed a greater increase relative to aged mice. Behaviorally, HFD increased anxiety-like behavior in adult but not aged mice without significantly affecting spatial cognition. In contrast, aged mice fed either control or HFD diet displayed deficits in novel place discrimination and spatial learning. Our results suggest that adult mice are more susceptible to the physiological and anxiety-like effects of HFD consumption than aged mice, while aged mice displayed deficits in spatial cognition regardless of dietary influence. We conclude that although HFD induces systemic metabolic dysfunction in both adult and aged mice, overall cognitive function was not adversely affected under the current experimental conditions.

  20. Spatial Cognition in Adult and Aged Mice Exposed to High-Fat Diet.

    PubMed

    Kesby, James P; Kim, Jane J; Scadeng, Miriam; Woods, Gina; Kado, Deborah M; Olefsky, Jerrold M; Jeste, Dilip V; Achim, Cristian L; Semenova, Svetlana

    2015-01-01

    Aging is associated with a decline in multiple aspects of cognitive function, with spatial cognition being particularly sensitive to age-related decline. Environmental stressors, such as high-fat diet (HFD) exposure, that produce a diabetic phenotype and metabolic dysfunction may indirectly lead to exacerbated brain aging and promote the development of cognitive deficits. The present work investigated whether exposure to HFD exacerbates age-related cognitive deficits in adult versus aged mice. Adult (5 months old) and aged (15 months old) mice were exposed to control diet or HFD for three months prior to, and throughout, behavioral testing. Anxiety-like behavior in the light-dark box test, discrimination learning and memory in the novel object/place recognition tests, and spatial learning and memory in the Barnes maze test were assessed. HFD resulted in significant gains in body weight and fat mass content with adult mice gaining significantly more weight and adipose tissue due to HFD than aged mice. Weight gain was attributed to food calories sourced from fat, but not total calorie intake. HFD increased fasting insulin levels in all mice, but adult mice showed a greater increase relative to aged mice. Behaviorally, HFD increased anxiety-like behavior in adult but not aged mice without significantly affecting spatial cognition. In contrast, aged mice fed either control or HFD diet displayed deficits in novel place discrimination and spatial learning. Our results suggest that adult mice are more susceptible to the physiological and anxiety-like effects of HFD consumption than aged mice, while aged mice displayed deficits in spatial cognition regardless of dietary influence. We conclude that although HFD induces systemic metabolic dysfunction in both adult and aged mice, overall cognitive function was not adversely affected under the current experimental conditions. PMID:26448649

  1. Monitoring of Antarctic moss ecosystems using a high spatial resolution imaging spectroscopy

    NASA Astrophysics Data System (ADS)

    Malenovsky, Zbynek; Lucieer, Arko; Robinson, Sharon; Harwin, Stephen; Turner, Darren; Veness, Tony

    2013-04-01

    The most abundant photosynthetically active plants growing along the rocky Antarctic shore are mosses of three species: Schistidium antarctici, Ceratodon purpureus, and Bryum pseudotriquetrum. Even though mosses are well adapted to the extreme climate conditions, their existence in Antarctica depends strongly on availability of liquid water from snowmelt during the short summer season. Recent changes in temperature, wind speed and stratospheric ozone are stimulating faster evaporation, which in turn influences moss growing rate, health state and abundance. This makes them an ideal bio-indicator of the Antarctic climate change. Very short growing season, lasting only about three months, requires a time efficient, easily deployable and spatially resolved method for monitoring the Antarctic moss beds. Ground and/or low-altitude airborne imaging spectroscopy (called also hyperspectral remote sensing) offers a fast and spatially explicit approach to investigate an actual spatial extent and physiological state of moss turfs. A dataset of ground-based spectral images was acquired with a mini-Hyperspec imaging spectrometer (Headwall Inc., the USA) during the Antarctic summer 2012 in the surroundings of the Australian Antarctic station Casey (Windmill Islands). The collection of high spatial resolution spectral images, with pixels about 2 cm in size containing from 162 up to 324 narrow spectral bands of wavelengths between 399 and 998 nm, was accompanied with point moss reflectance measurements recorded with the ASD HandHeld-2 spectroradiometer (Analytical Spectral Devices Inc., the USA). The first spectral analysis indicates significant differences in red-edge and near-infrared reflectance of differently watered moss patches. Contrary to high plants, where the Normalized Difference Vegetation Index (NDVI) represents an estimate of green biomass, NDVI of mosses indicates mainly the actual water content. Similarly to high plants, reflectance of visible wavelengths is

  2. Color calibration and fusion of lens-free and mobile-phone microscopy images for high-resolution and accurate color reproduction

    PubMed Central

    Zhang, Yibo; Wu, Yichen; Zhang, Yun; Ozcan, Aydogan

    2016-01-01

    Lens-free holographic microscopy can achieve wide-field imaging in a cost-effective and field-portable setup, making it a promising technique for point-of-care and telepathology applications. However, due to relatively narrow-band sources used in holographic microscopy, conventional colorization methods that use images reconstructed at discrete wavelengths, corresponding to e.g., red (R), green (G) and blue (B) channels, are subject to color artifacts. Furthermore, these existing RGB colorization methods do not match the chromatic perception of human vision. Here we present a high-color-fidelity and high-resolution imaging method, termed “digital color fusion microscopy” (DCFM), which fuses a holographic image acquired at a single wavelength with a color-calibrated image taken by a low-magnification lens-based microscope using a wavelet transform-based colorization method. We demonstrate accurate color reproduction of DCFM by imaging stained tissue sections. In particular we show that a lens-free holographic microscope in combination with a cost-effective mobile-phone-based microscope can generate color images of specimens, performing very close to a high numerical-aperture (NA) benchtop microscope that is corrected for color distortions and chromatic aberrations, also matching the chromatic response of human vision. This method can be useful for wide-field imaging needs in telepathology applications and in resource-limited settings, where whole-slide scanning microscopy systems are not available. PMID:27283459

  3. Color calibration and fusion of lens-free and mobile-phone microscopy images for high-resolution and accurate color reproduction.

    PubMed

    Zhang, Yibo; Wu, Yichen; Zhang, Yun; Ozcan, Aydogan

    2016-01-01

    Lens-free holographic microscopy can achieve wide-field imaging in a cost-effective and field-portable setup, making it a promising technique for point-of-care and telepathology applications. However, due to relatively narrow-band sources used in holographic microscopy, conventional colorization methods that use images reconstructed at discrete wavelengths, corresponding to e.g., red (R), green (G) and blue (B) channels, are subject to color artifacts. Furthermore, these existing RGB colorization methods do not match the chromatic perception of human vision. Here we present a high-color-fidelity and high-resolution imaging method, termed "digital color fusion microscopy" (DCFM), which fuses a holographic image acquired at a single wavelength with a color-calibrated image taken by a low-magnification lens-based microscope using a wavelet transform-based colorization method. We demonstrate accurate color reproduction of DCFM by imaging stained tissue sections. In particular we show that a lens-free holographic microscope in combination with a cost-effective mobile-phone-based microscope can generate color images of specimens, performing very close to a high numerical-aperture (NA) benchtop microscope that is corrected for color distortions and chromatic aberrations, also matching the chromatic response of human vision. This method can be useful for wide-field imaging needs in telepathology applications and in resource-limited settings, where whole-slide scanning microscopy systems are not available. PMID:27283459

  4. Color calibration and fusion of lens-free and mobile-phone microscopy images for high-resolution and accurate color reproduction.

    PubMed

    Zhang, Yibo; Wu, Yichen; Zhang, Yun; Ozcan, Aydogan

    2016-01-01

    Lens-free holographic microscopy can achieve wide-field imaging in a cost-effective and field-portable setup, making it a promising technique for point-of-care and telepathology applications. However, due to relatively narrow-band sources used in holographic microscopy, conventional colorization methods that use images reconstructed at discrete wavelengths, corresponding to e.g., red (R), green (G) and blue (B) channels, are subject to color artifacts. Furthermore, these existing RGB colorization methods do not match the chromatic perception of human vision. Here we present a high-color-fidelity and high-resolution imaging method, termed "digital color fusion microscopy" (DCFM), which fuses a holographic image acquired at a single wavelength with a color-calibrated image taken by a low-magnification lens-based microscope using a wavelet transform-based colorization method. We demonstrate accurate color reproduction of DCFM by imaging stained tissue sections. In particular we show that a lens-free holographic microscope in combination with a cost-effective mobile-phone-based microscope can generate color images of specimens, performing very close to a high numerical-aperture (NA) benchtop microscope that is corrected for color distortions and chromatic aberrations, also matching the chromatic response of human vision. This method can be useful for wide-field imaging needs in telepathology applications and in resource-limited settings, where whole-slide scanning microscopy systems are not available.

  5. Color calibration and fusion of lens-free and mobile-phone microscopy images for high-resolution and accurate color reproduction

    NASA Astrophysics Data System (ADS)

    Zhang, Yibo; Wu, Yichen; Zhang, Yun; Ozcan, Aydogan

    2016-06-01

    Lens-free holographic microscopy can achieve wide-field imaging in a cost-effective and field-portable setup, making it a promising technique for point-of-care and telepathology applications. However, due to relatively narrow-band sources used in holographic microscopy, conventional colorization methods that use images reconstructed at discrete wavelengths, corresponding to e.g., red (R), green (G) and blue (B) channels, are subject to color artifacts. Furthermore, these existing RGB colorization methods do not match the chromatic perception of human vision. Here we present a high-color-fidelity and high-resolution imaging method, termed “digital color fusion microscopy” (DCFM), which fuses a holographic image acquired at a single wavelength with a color-calibrated image taken by a low-magnification lens-based microscope using a wavelet transform-based colorization method. We demonstrate accurate color reproduction of DCFM by imaging stained tissue sections. In particular we show that a lens-free holographic microscope in combination with a cost-effective mobile-phone-based microscope can generate color images of specimens, performing very close to a high numerical-aperture (NA) benchtop microscope that is corrected for color distortions and chromatic aberrations, also matching the chromatic response of human vision. This method can be useful for wide-field imaging needs in telepathology applications and in resource-limited settings, where whole-slide scanning microscopy systems are not available.

  6. A high spatial resolution Stokes polarimeter for motional Stark effect imaging.

    PubMed

    Thorman, Alex; Michael, Clive; Howard, John

    2013-06-01

    We describe an enhanced temporally switched interfero-polarimeter that has been successfully deployed for high spatial resolution motional Stark effect imaging on the KSTAR superconducting tokamak. The system utilizes dual switching ferroelectric liquid crystal waveplates to image the full Stokes vector of elliptically polarized and Doppler-shifted Stark-Zeeman Balmer-alpha emission from high energy neutral beams injected into the magnetized plasma. We describe the optical system and compare its performance against a Mueller matrix model that takes account of non-ideal performance of the switching ferro-electric liquid crystal waveplates and other polarizing components. PMID:23822345

  7. A high spatial resolution Stokes polarimeter for motional Stark effect imaging

    SciTech Connect

    Thorman, Alex; Michael, Clive; Howard, John

    2013-06-15

    We describe an enhanced temporally switched interfero-polarimeter that has been successfully deployed for high spatial resolution motional Stark effect imaging on the KSTAR superconducting tokamak. The system utilizes dual switching ferroelectric liquid crystal waveplates to image the full Stokes vector of elliptically polarized and Doppler-shifted Stark-Zeeman Balmer-alpha emission from high energy neutral beams injected into the magnetized plasma. We describe the optical system and compare its performance against a Mueller matrix model that takes account of non-ideal performance of the switching ferro-electric liquid crystal waveplates and other polarizing components.

  8. High spatial resolution upgrade of the electron cyclotron emission radiometer for the DIII-D tokamak.

    PubMed

    Truong, D D; Austin, M E

    2014-11-01

    The 40-channel DIII-D electron cyclotron emission (ECE) radiometer provides measurements of Te(r,t) at the tokamak midplane from optically thick, second harmonic X-mode emission over a frequency range of 83-130 GHz. The frequency spacing of the radiometer's channels results in a spatial resolution of ∼1-3 cm, depending on local magnetic field and electron temperature. A new high resolution subsystem has been added to the DIII-D ECE radiometer to make sub-centimeter (0.6-0.8 cm) resolution Te measurements. The high resolution subsystem branches off from the regular channels' IF bands and consists of a microwave switch to toggle between IF bands, a switched filter bank for frequency selectivity, an adjustable local oscillator and mixer for further frequency down-conversion, and a set of eight microwave filters in the 2-4 GHz range. Higher spatial resolution is achieved through the use of a narrower (200 MHz) filter bandwidth and closer spacing between the filters' center frequencies (250 MHz). This configuration allows for full coverage of the 83-130 GHz frequency range in 2 GHz bands. Depending on the local magnetic field, this translates into a "zoomed-in" analysis of a ∼2-4 cm radial region. Expected uses of these channels include mapping the spatial dependence of Alfven eigenmodes, geodesic acoustic modes, and externally applied magnetic perturbations. Initial Te measurements, which demonstrate that the desired resolution is achieved, are presented.

  9. HIGH-RESOLUTION SPATIAL MODELING OF DAILY WEATHER ELEMENTS FOR A CATCHMENT IN THE OREGON CASCADE MOUNTAINS, UNITED STATES

    EPA Science Inventory

    High-quality, daily meteorological data at high spatial resolution are essential for a variety of hydrologic and ecological modeling applications that support environmental risk assessments and decision making. This paper describes the development, application, and assessment of ...

  10. Accurate mass fragment library for rapid analysis of pesticides on produce using ambient pressure desorption ionization with high-resolution mass spectrometry.

    PubMed

    Kern, Sara E; Lin, Lora A; Fricke, Frederick L

    2014-08-01

    U.S. food imports have been increasing steadily for decades, intensifying the need for a rapid and sensitive screening technique. A method has been developed that uses foam disks to sample the surface of incoming produce. This work provides complimentary information to the extensive amount of published pesticide fragmentation data collected using LCMS systems (Sack et al. Journal of Agricultural and Food Chemistry, 59, 6383-6411, 2011; Mol et al. Analytical and Bioanalytical Chemistry, 403, 2891-2908, 2012). The disks are directly analyzed using transmission-mode direct analysis in real time (DART) ambient pressure desorption ionization coupled to a high resolution accurate mass-mass spectrometer (HRAM-MS). In order to provide more certainty in the identification of the pesticides detected, a library of accurate mass fragments and isotopes of the protonated parent molecular ion (the [M+H]⁺) has been developed. The HRAM-MS is equipped with a quadrupole mass filter, providing the capability of "data-dependent" fragmentation, as opposed to "all -ion" fragmentation (where all of the ions enter a collision chamber and are fragmented at once). A temperature gradient for the DART helium stream and multiple collision energies were employed to detect and fragment 164 pesticides of varying chemical classes, sizes, and polarities. The accurate mass information of precursor ([M+H]⁺ ion) and fragment ions is essential in correctly identifying chemical contaminants on the surface of imported produce. Additionally, the inclusion of isotopes of the [M+H]⁺ in the database adds another metric to the confirmation process. The fragmentation data were collected using a Q-Exactive mass spectrometer and were added to a database used to process data collected with an Exactive mass spectrometer, an instrument that is more readily available for this screening application. The commodities investigated range from smooth-skinned produce such as apples to rougher surfaces like broccoli

  11. Accurate Mass Fragment Library for Rapid Analysis of Pesticides on Produce Using Ambient Pressure Desorption Ionization with High-Resolution Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Kern, Sara E.; Lin, Lora A.; Fricke, Frederick L.

    2014-08-01

    U.S. food imports have been increasing steadily for decades, intensifying the need for a rapid and sensitive screening technique. A method has been developed that uses foam disks to sample the surface of incoming produce. This work provides complimentary information to the extensive amount of published pesticide fragmentation data collected using LCMS systems (Sack et al. Journal of Agricultural and Food Chemistry, 59, 6383-6411, 2011; Mol et al. Analytical and Bioanalytical Chemistry, 403, 2891-2908, 2012). The disks are directly analyzed using transmission-mode direct analysis in real time (DART) ambient pressure desorption ionization coupled to a high resolution accurate mass-mass spectrometer (HRAM-MS). In order to provide more certainty in the identification of the pesticides detected, a library of accurate mass fragments and isotopes of the protonated parent molecular ion (the [M+H]+) has been developed. The HRAM-MS is equipped with a quadrupole mass filter, providing the capability of "data-dependent" fragmentation, as opposed to "all -ion" fragmentation (where all of the ions enter a collision chamber and are fragmented at once). A temperature gradient for the DART helium stream and multiple collision energies were employed to detect and fragment 164 pesticides of varying chemical classes, sizes, and polarities. The accurate mass information of precursor ([M+H]+ ion) and fragment ions is essential in correctly identifying chemical contaminants on the surface of imported produce. Additionally, the inclusion of isotopes of the [M+H]+ in the database adds another metric to the confirmation process. The fragmentation data were collected using a Q-Exactive mass spectrometer and were added to a database used to process data collected with an Exactive mass spectrometer, an instrument that is more readily available for this screening application. The commodities investigated range from smooth-skinned produce such as apples to rougher surfaces like broccoli. The

  12. High spatial and temporal resolution phase contrast imaging of shock wave using the LCLS beam

    NASA Astrophysics Data System (ADS)

    Lee, Hae Ja; Galtier, E.; Nagler, B.; Schropp, A.; Hastings, J. B.; Lee, R. W.; Collins, G. W.; Ping, Y.; Schroer, C. G.

    2012-10-01

    A new technique using the Linac Coherent Light Source (LCLS), the x-ray free electron laser source, was developed at Matter in Extreme Conditions (MEC) endstation to provide high spatial and temporal resolution phase contrast imaging of shock waves in matter. The LCLS has high peak brightness enabling a high beam current of a few mJ/pulse to be focused into a small spot to achieve high imaging resolution < 1 μm. 150 ps, 140 mJ, 800 nm short pulse laser beam was focused to produce shock waves in a material. We collected the first high resolution phase contrast movies of shock propagation inside materials. These results provide the first in-situ imaging of the shock front width, deformation length and time scale behind the shock of materials with free electron laser.

  13. Delineation of river bed-surface patches by clustering high-resolution spatial grain size data

    NASA Astrophysics Data System (ADS)

    Nelson, Peter A.; Bellugi, Dino; Dietrich, William E.

    2014-01-01

    The beds of gravel-bed rivers commonly display distinct sorting patterns, which at length scales of ~ 0.1 - 1 channel widths appear to form an organization of patches or facies. This paper explores alternatives to traditional visual facies mapping by investigating methods of patch delineation in which clustering analysis is applied to a high-resolution grid of spatial grain-size distributions (GSDs) collected during a flume experiment. Specifically, we examine four clustering techniques: 1) partitional clustering of grain-size distributions with the k-means algorithm (assigning each GSD to a type of patch based solely on its distribution characteristics), 2) spatially-constrained agglomerative clustering ("growing" patches by merging adjacent GSDs, thus generating a hierarchical structure of patchiness), 3) spectral clustering using Normalized Cuts (using the spatial distance between GSDs and the distribution characteristics to generate a matrix describing the similarity between all GSDs, and using the eigenvalues of this matrix to divide the bed into patches), and 4) fuzzy clustering with the fuzzy c-means algorithm (assigning each GSD a membership probability to every patch type). For each clustering method, we calculate metrics describing how well-separated cluster-average GSDs are and how patches are arranged in space. We use these metrics to compute optimal clustering parameters, to compare the clustering methods against each other, and to compare clustering results with patches mapped visually during the flume experiment.All clustering methods produced better-separated patch GSDs than the visually-delineated patches. Although they do not produce crisp cluster assignment, fuzzy algorithms provide useful information that can characterize the uncertainty of a location on the bed belonging to any particular type of patch, and they can be used to characterize zones of transition from one patch to another. The extent to which spatial information influences

  14. High-fidelity spatially resolved multiphoton counting for quantum imaging applications.

    PubMed

    Chrapkiewicz, Radosław; Wasilewski, Wojciech; Banaszek, Konrad

    2014-09-01

    We present a method for spatially resolved multiphoton counting based on an intensified camera with the retrieval of multimode photon statistics fully accounting for nonlinearities in the detection process. The scheme relies on one-time quantum tomographic calibration of the detector. Faithful, high-fidelity reconstruction of single- and two-mode statistics of multiphoton states is demonstrated for coherent states and their statistical mixtures. The results consistently exhibit classical values of the Mandel parameter and the noise reduction factor in contrast to raw statistics of camera photo-events. Detector operation is reliable for illumination levels up to the average of one detected photon per an event area-substantially higher than in previous approaches to characterize quantum statistical properties of light with spatial resolution. PMID:25166081

  15. Entropy-driven spatial organization of highly confined polymers: Lessons for the bacterial chromosome

    NASA Astrophysics Data System (ADS)

    Jun, Suckjoon; Mulder, Bela

    2006-08-01

    Despite recent progress in visualization experiments, the mechanism underlying chromosome segregation in bacteria still remains elusive. Here we address a basic physical issue associated with bacterial chromosome segregation, namely the spatial organization of highly confined, self-avoiding polymers (of nontrivial topology) in a rod-shaped cell-like geometry. Through computer simulations, we present evidence that, under strong confinement conditions, topologically distinct domains of a polymer complex effectively repel each other to maximize their conformational entropy, suggesting that duplicated circular chromosomes could partition spontaneously. This mechanism not only is able to account for the spatial separation per se but also captures the major features of the spatiotemporal organization of the duplicating chromosomes observed in Escherichia coli and Caulobacter crescentus. bacterial chromosome segregation | Caulobacter crescentus | Escherichia coli | polymer physics

  16. High-Resolution Cortical Dipole Imaging Using Spatial Inverse Filter Based on Filtering Property

    PubMed Central

    2016-01-01

    Cortical dipole imaging has been developed to visualize brain electrical activity in high spatial resolution. It is necessary to solve an inverse problem to estimate the cortical dipole distribution from the scalp potentials. In the present study, the accuracy of cortical dipole imaging was improved by focusing on filtering property of the spatial inverse filter. We proposed an inverse filter that optimizes filtering property using a sigmoid function. The ability of the proposed method was compared with the traditional inverse techniques, such as Tikhonov regularization, truncated singular value decomposition (TSVD), and truncated total least squares (TTLS), in a computer simulation. The proposed method was applied to human experimental data of visual evoked potentials. As a result, the estimation accuracy was improved and the localized dipole distribution was obtained with less noise. PMID:27688747

  17. Spatial and spectral coherence in propagating high-intensity twin beams.

    PubMed

    Haderka, Ondřej; Machulka, Radek; Peřina, Jan; Allevi, Alessia; Bondani, Maria

    2015-09-25

    Spatial and spectral coherence of high-intensity twin-beam states propagating from the near-field to the far-field configurations is experimentally investigated by measuring intensity auto- and cross-correlation functions. The experimental setup includes a moving crystal and an iCCD camera placed at the output plane of an imaging spectrometer. Evolution from the tight near-field spatial position cross-correlations to the far-field momentum cross-correlations, accompanied by changeless spectral cross-correlations, is observed. Intensity autocorrelation functions and beam profiles are also monitored as they provide the number of degrees of freedom constituting the down-converted beams. The strength of intensity cross-correlations as an alternative quantity for the determination of the number of degrees of freedom is also measured. The relation between the beam coherence and the number of degrees of freedom is discussed.

  18. Spatial and spectral coherence in propagating high-intensity twin beams

    PubMed Central

    Haderka, Ondřej; Machulka, Radek; Peřina, Jan; Allevi, Alessia; Bondani, Maria

    2015-01-01

    Spatial and spectral coherence of high-intensity twin-beam states propagating from the near-field to the far-field configurations is experimentally investigated by measuring intensity auto- and cross-correlation functions. The experimental setup includes a moving crystal and an iCCD camera placed at the output plane of an imaging spectrometer. Evolution from the tight near-field spatial position cross-correlations to the far-field momentum cross-correlations, accompanied by changeless spectral cross-correlations, is observed. Intensity autocorrelation functions and beam profiles are also monitored as they provide the number of degrees of freedom constituting the down-converted beams. The strength of intensity cross-correlations as an alternative quantity for the determination of the number of degrees of freedom is also measured. The relation between the beam coherence and the number of degrees of freedom is discussed. PMID:26403609

  19. Time-Resolved High-Spatial-Resolution Measurements of Underwater Laser Ionization and Filamentation

    NASA Astrophysics Data System (ADS)

    Jones, T. G.; Kaganovich, D.; Helle, M. H.; Penano, J.; Ting, A.; Gordon, D.

    2013-10-01

    Laser triggering and guiding of underwater electrical discharges are being investigated and developed at NRL for applications including advanced micromachining and low-frequency laser acoustic generation. As part of this development we recently made several high-spatial-resolution, time-resolved measurements of underwater optical filamentation and laser ionization. Using 2-laser pump-probe backlit imaging techniques, we were able to achieve time resolution as short as 35 fs and spatial resolution down to 1 micron. Shadowgraph images show few-micron diameter gas bubbles forming throughout the pump beam path in ps timescales. Microbubble numbers and density increased with pulse energy and time during the pump pulse. We also obtained time-resolved spectra of ns-laser-ionized water, revealing black-body radiation lasting more than 100 ns after the ionizing pulse. Results from ongoing underwater laser ionization, filamentation, and discharge-guiding experiments will be presented. This work is supported by NRL Base Funds.

  20. High-Resolution Cortical Dipole Imaging Using Spatial Inverse Filter Based on Filtering Property

    PubMed Central

    2016-01-01

    Cortical dipole imaging has been developed to visualize brain electrical activity in high spatial resolution. It is necessary to solve an inverse problem to estimate the cortical dipole distribution from the scalp potentials. In the present study, the accuracy of cortical dipole imaging was improved by focusing on filtering property of the spatial inverse filter. We proposed an inverse filter that optimizes filtering property using a sigmoid function. The ability of the proposed method was compared with the traditional inverse techniques, such as Tikhonov regularization, truncated singular value decomposition (TSVD), and truncated total least squares (TTLS), in a computer simulation. The proposed method was applied to human experimental data of visual evoked potentials. As a result, the estimation accuracy was improved and the localized dipole distribution was obtained with less noise.

  1. Micro mirror arrays as high-resolution spatial light modulators for photoactivation and optogenetics

    NASA Astrophysics Data System (ADS)

    Rückerl, F.; Kielhorn, Martin; Tinevez, J.-Y.; Heber, J.; Heintzmann, R.; Shorte, S.

    2013-03-01

    The ability to control the illumination and imaging paths of optical microscopes is an essential part of advanced fluorescence microscopy, and a powerful tool for optogenetics. In order to maximize the visualization and the image quality of the objects under observation we use programmable, fast Micro Mirror Arrays (MMAs) as high-resolution Spatial Light Modulators (SLMs). Using two 256x256 MMAs in a mirror-based illumination setup allows for fast angular-spatial control at a wide range of wavelengths (300-1000nm). Additionally, the illumination intensity can be controlled at 10-bit resolution. The setup allows selective illumination of subcellular regions of interest enabling the precise, localized activation of fluorescent probes and the activation and deactivation of subcellular and cellular signaling cascades using photo-activated ion-channels. Furthermore, inasmuch as phototoxicity is dependent on the rate of photo illumination [1] we show that our system, which provides fast, compartmentalized illumination is minimally phototoxic.

  2. Liquid Hybridization and Solid Phase Detection: A Highly Sensitive and Accurate Strategy for MicroRNA Detection in Plants and Animals.

    PubMed

    Li, Fosheng; Mei, Lanju; Zhan, Cheng; Mao, Qiang; Yao, Min; Wang, Shenghua; Tang, Lin; Chen, Fang

    2016-01-01

    MicroRNAs (miRNAs) play important roles in nearly every aspect of biology, including physiological, biochemical, developmental and pathological processes. Therefore, a highly sensitive and accurate method of detection of miRNAs has great potential in research on theory and application, such as the clinical approach to medicine, animal and plant production, as well as stress response. Here, we report a strategic method to detect miRNAs from multicellular organisms, which mainly includes liquid hybridization and solid phase detection (LHSPD); it has been verified in various species and is much more sensitive than traditional biotin-labeled Northern blots. By using this strategy and chemiluminescent detection with digoxigenin (DIG)-labeled or biotin-labeled oligonucleotide probes, as low as 0.01-0.25 fmol [for DIG-CDP Star (disodium2-chloro-5-(4-methoxyspiro{1,2-dioxetane-3,2'-(5'-chloro)tricyclo[3.3.1.13,7]decan}-4-yl)phenyl phosphate) system], 0.005-0.1 fmol (for biotin-CDP Star system), or 0.05-0.5 fmol (for biotin-luminol system) of miRNA can be detected and one-base difference can be distinguished between miRNA sequences. Moreover, LHSPD performed very well in the quantitative analysis of miRNAs, and the whole process can be completed within about 9 h. The strategy of LHSPD provides an effective solution for rapid, accurate, and sensitive detection and quantitative analysis of miRNAs in plants and animals. PMID:27598139

  3. Retrospective screening of relevant pesticide metabolites in food using liquid chromatography high resolution mass spectrometry and accurate-mass databases of parent molecules and diagnostic fragment ions.

    PubMed

    Polgár, László; García-Reyes, Juan F; Fodor, Péter; Gyepes, Attila; Dernovics, Mihály; Abrankó, László; Gilbert-López, Bienvenida; Molina-Díaz, Antonio

    2012-08-01

    In recent years, the detection and characterization of relevant pesticide metabolites in food is an important task in order to evaluate their formation, kinetics, stability, and toxicity. In this article, a methodology for the systematic screening of pesticides and their main metabolites in fruit and vegetable samples is described, using LC-HRMS and accurate-mass database search of parent compounds and their diagnostic fragment ions. The approach is based on (i) search for parent pesticide molecules; (ii) search for their metabolites in the positive samples, assuming common fragmentation pathways between the metabolites and parent pesticide molecules; and (iii) search for pesticide conjugates using the data from both parent species and diagnostic fragment ions. An accurate-mass database was constructed consisting of 1396 compounds (850 parent compounds, 447 fragment ions and 99 metabolites). The screening process was performed by the software in an automated fashion. The proposed methodology was evaluated with 29 incurred samples and the output obtained was compared to standard pesticide testing methods (targeted LC-MS/MS). Examples on the application of the proposed approach are shown, including the detection of several pesticide glycosides derivatives, which were found with significantly relevant intensities. Glucose-conjugated forms of parent compounds (e.g., fenhexamid-O-glucoside) and those of metabolites (e.g., despropyl-iprodione-N-glycoside) were detected. Facing the lack of standards for glycosylated pesticides, the study was completed with the synthesis of fenhexamid-O-glucoside for quantification purposes. In some cases the pesticide derivatives were found in a relatively high ratio, drawing the attention to these kinds of metabolites and showing that they should not be neglected in multi-residue methods. The global coverage obtained on the 29 analyzed samples showed the usefulness and benefits of the proposed approach and highlights the practical

  4. Liquid Hybridization and Solid Phase Detection: A Highly Sensitive and Accurate Strategy for MicroRNA Detection in Plants and Animals

    PubMed Central

    Li, Fosheng; Mei, Lanju; Zhan, Cheng; Mao, Qiang; Yao, Min; Wang, Shenghua; Tang, Lin; Chen, Fang

    2016-01-01

    MicroRNAs (miRNAs) play important roles in nearly every aspect of biology, including physiological, biochemical, developmental and pathological processes. Therefore, a highly sensitive and accurate method of detection of miRNAs has great potential in research on theory and application, such as the clinical approach to medicine, animal and plant production, as well as stress response. Here, we report a strategic method to detect miRNAs from multicellular organisms, which mainly includes liquid hybridization and solid phase detection (LHSPD); it has been verified in various species and is much more sensitive than traditional biotin-labeled Northern blots. By using this strategy and chemiluminescent detection with digoxigenin (DIG)-labeled or biotin-labeled oligonucleotide probes, as low as 0.01–0.25 fmol [for DIG-CDP Star (disodium2-chloro-5-(4-methoxyspiro{1,2-dioxetane-3,2′-(5′-chloro)tricyclo[3.3.1.13,7]decan}-4-yl)phenyl phosphate) system], 0.005–0.1 fmol (for biotin-CDP Star system), or 0.05–0.5 fmol (for biotin-luminol system) of miRNA can be detected and one-base difference can be distinguished between miRNA sequences. Moreover, LHSPD performed very well in the quantitative analysis of miRNAs, and the whole process can be completed within about 9 h. The strategy of LHSPD provides an effective solution for rapid, accurate, and sensitive detection and quantitative analysis of miRNAs in plants and animals. PMID:27598139

  5. SPATIAL AND TEMPORAL DIMENSIONS OF NEIGHBORHOOD EFFECTS ON HIGH SCHOOL GRADUATION

    PubMed Central

    Crowder, Kyle; South, Scott J.

    2010-01-01

    Research into the effects of neighborhood characteristics on children’s behavior has burgeoned in recent years, but these studies have generally adopted a limited conceptualization of the spatial and temporal dimensions of neighborhood effects. We use longitudinal data from the Panel Study of Income Dynamics and techniques of spatial data analysis to examine how both the socioeconomic characteristics of extralocal neighborhoods—neighborhoods surrounding the immediate neighborhood of residence—and the duration of exposure to disadvantaged neighborhoods throughout the childhood life course influence the likelihood of graduating from high school. Among blacks and whites, socioeconomic advantage in the immediate neighborhood increases the likelihood of completing high school, but among whites higher levels of socioeconomic advantage in extralocal neighborhoods decrease high school graduation rates. Extralocal neighborhood advantage suppresses the influence of advantage in the immediate neighborhood so that controlling for extralocal conditions provides stronger support for the neighborhood effects hypothesis than has previously been observed. Exposure to advantaged neighborhoods over the childhood life course exerts a stronger effect than point-in-time measures on high school graduation, and racial differences in exposure to advantaged neighbors over the childhood life course help to suppress a net black advantage in the likelihood of completing high school. PMID:21180398

  6. In-duct identification of fluid-borne source with high spatial resolution

    NASA Astrophysics Data System (ADS)

    Heo, Yong-Ho; Ih, Jeong-Guon; Bodén, Hans

    2014-11-01

    Source identification of acoustic characteristics of in-duct fluid machinery is required for coping with the fluid-borne noise. By knowing the acoustic pressure and particle velocity field at the source plane in detail, the sound generation mechanism of a fluid machine can be understood. The identified spatial distribution of the strength of major radiators would be useful for the low noise design. Conventional methods for measuring the source in a wide duct have not been very helpful in investigating the source properties in detail because their spatial resolution is improper for the design purpose. In this work, an inverse method to estimate the source parameters with a high spatial resolution is studied. The theoretical formulation including the evanescent modes and near-field measurement data is given for a wide duct. After validating the proposed method to a duct excited by an acoustic driver, an experiment on a duct system driven by an air blower is conducted in the presence of flow. A convergence test for the evanescent modes is performed to find the necessary number of modes to regenerate the measured pressure field precisely. By using the converged modal amplitudes, very-close near-field pressure to the source is regenerated and compared with the measured pressure, and the maximum error was -16.3 dB. The source parameters are restored from the converged modal amplitudes. Then, the distribution of source parameters on the driver and the blower is clearly revealed with a high spatial resolution for kR<1.84 in which range only plane waves can propagate to far field in a duct. Measurement using a flush mounted sensor array is discussed, and the removal of pure radial modes in the modeling is suggested.

  7. COMPLEX ORGANIC MOLECULES AT HIGH SPATIAL RESOLUTION TOWARD ORION-KL. II. KINEMATICS

    SciTech Connect

    Friedel, D. N.; Widicus Weaver, S. L. E-mail: susanna.widicus.weaver@emory.edu

    2012-08-01

    It has recently been suggested that chemical processing can shape the spatial distributions of complex molecules in the Orion-KL region and leads to the nitrogen-oxygen 'chemical differentiation' seen in previous observations of this source. Orion-KL is a very dynamic region, and it is therefore also possible that physical conditions can shape the molecular distributions in this source. Only high spatial resolution observations can provide the information needed to disentangle these effects. Here, we present millimeter imaging studies of Orion-KL at various beam sizes using the Combined Array for Research in Millimeter-wave Astronomy. We compare molecular images with high spatial resolution images that trace the temperature, density, and kinematics of the source in order to investigate the effects of physical conditions on molecular distributions. These observations were conducted at {lambda} = 3 mm and included transitions of ethyl cyanide [C{sub 2}H{sub 5}CN], methyl formate [HCOOCH{sub 3}], formic acid [HCOOH], acetone [(CH{sub 3}){sub 2}CO], SiO, and methanol [CH{sub 3}OH]. We find differences in the molecular distributions as a function of each of the aforementioned physical factors. These results indicate that acetone may be produced by chemical processing and is robust to large changes in physical conditions, while formic acid is readily destroyed by gas-phase processing in warm and dense regions. We also find that while the spatial distributions of ethyl cyanide and methyl formate are not distinct as is suggested by the concept of 'chemical differentiation', local physical conditions shape the small-scale emission structure for these species.

  8. Acute stress differentially affects spatial configuration learning in high and low cortisol-responding healthy adults

    PubMed Central

    Meyer, Thomas; Smeets, Tom; Giesbrecht, Timo; Quaedflieg, Conny W. E. M.; Merckelbach, Harald

    2013-01-01

    Background Stress and stress hormones modulate memory formation in various ways that are relevant to our understanding of stress-related psychopathology, such as posttraumatic stress disorder (PTSD). Particular relevance is attributed to efficient memory formation sustained by the hippocampus and parahippocampus. This process is thought to reduce the occurrence of intrusions and flashbacks following trauma, but may be negatively affected by acute stress. Moreover, recent evidence suggests that the efficiency of visuo-spatial processing and learning based on the hippocampal area is related to PTSD symptoms. Objective The current study investigated the effect of acute stress on spatial configuration learning using a spatial contextual cueing task (SCCT) known to heavily rely on structures in the parahippocampus. Method Acute stress was induced by subjecting participants (N = 34) to the Maastricht Acute Stress Test (MAST). Following a counterbalanced within-subject approach, the effects of stress and the ensuing hormonal (i.e., cortisol) activity on subsequent SCCT performance were compared to SCCT performance following a no-stress control condition. Results Acute stress did not impact SCCT learning overall, but opposing effects emerged for high versus low cortisol responders to the MAST. Learning scores following stress were reduced in low cortisol responders, while high cortisol-responding participants showed improved learning. Conclusions The effects of stress on spatial configuration learning were moderated by the magnitude of endogenous cortisol secretion. These findings suggest a possible mechanism by which cortisol responses serve an adaptive function during stress and trauma, and this may prove to be a promising route for future research in this area. PMID:23671762

  9. Spatial and temporal changes in household structure locations using high-resolution satellite imagery for population assessment: an analysis in southern Zambia, 2006-2011.

    PubMed

    Shields, Timothy; Pinchoff, Jessie; Lubinda, Jailos; Hamapumbu, Harry; Searle, Kelly; Kobayashi, Tamaki; Thuma, Philip E; Moss, William J; Curriero, Frank C

    2016-05-31

    Satellite imagery is increasingly available at high spatial resolution and can be used for various purposes in public health research and programme implementation. Comparing a census generated from two satellite images of the same region in rural southern Zambia obtained four and a half years apart identified patterns of household locations and change over time. The length of time that a satellite image-based census is accurate determines its utility. Households were enumerated manually from satellite images obtained in 2006 and 2011 of the same area. Spatial statistics were used to describe clustering, cluster detection, and spatial variation in the location of households. A total of 3821 household locations were enumerated in 2006 and 4256 in 2011, a net change of 435 houses (11.4% increase). Comparison of the images indicated that 971 (25.4%) structures were added and 536 (14.0%) removed. Further analysis suggested similar household clustering in the two images and no substantial difference in concentration of households across the study area. Cluster detection analysis identified a small area where significantly more household structures were removed than expected; however, the amount of change was of limited practical significance. These findings suggest that random sampling of households for study participation would not induce geographic bias if based on a 4.5-year-old image in this region. Application of spatial statistical methods provides insights into the population distribution changes between two time periods and can be helpful in assessing the accuracy of satellite imagery.

  10. High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy.

    PubMed

    Reymann, Jürgen; Baddeley, David; Gunkel, Manuel; Lemmer, Paul; Stadter, Werner; Jegou, Thibaud; Rippe, Karsten; Cremer, Christoph; Birk, Udo

    2008-01-01

    Spatially modulated illumination (SMI) microscopy is a method of wide field fluorescence microscopy featuring interferometric illumination, which delivers structural information about nanoscale architecture in fluorescently labelled cells. The first prototype of the SMI microscope proved its applicability to a wide range of biological questions. For the SMI live cell imaging this system was enhanced in terms of the development of a completely new upright configuration. This so called Vertico-SMI transfers the advantages of SMI nanoscaling to vital biological systems, and is shown to work consistently at different temperatures using both oil- and water-immersion objective lenses. Furthermore, we increased the speed of data acquisition to minimize errors in the detection signal resulting from cellular or object movement. By performing accurate characterization, the present Vertico-SMI now offers a fully-fledged microscope enabling a complete three-dimensional (3D) SMI data stack to be acquired in less than 2 seconds. We have performed live cell measurements of a tet-operator repeat insert in U2OS cells, which provided the first in vivo signatures of subnuclear complexes. Furthermore, we have successfully implemented an optional optical configuration allowing the generation of high-resolution localization microscopy images of a nuclear pore complex distribution.

  11. Panel-based Genetic Diagnostic Testing for Inherited Eye Diseases is Highly Accurate and Reproducible and More Sensitive for Variant Detection Than Exome Sequencing

    PubMed Central

    Bujakowska, Kinga M.; Sousa, Maria E.; Fonseca-Kelly, Zoë D.; Taub, Daniel G.; Janessian, Maria; Wang, Dan Yi; Au, Elizabeth D.; Sims, Katherine B.; Sweetser, David A.; Fulton, Anne B.; Liu, Qin; Wiggs, Janey L.; Gai, Xiaowu; Pierce, Eric A.

    2015-01-01

    Purpose Next-generation sequencing (NGS) based methods are being adopted broadly for genetic diagnostic testing, but the performance characteristics of these techniques have not been fully defined with regard to test accuracy and reproducibility. Methods We developed a targeted enrichment and NGS approach for genetic diagnostic testing of patients with inherited eye disorders, including inherited retinal degenerations, optic atrophy and glaucoma. In preparation for providing this Genetic Eye Disease (GEDi) test on a CLIA-certified basis, we performed experiments to measure the sensitivity, specificity, reproducibility as well as the clinical sensitivity of the test. Results The GEDi test is highly reproducible and accurate, with sensitivity and specificity for single nucleotide variant detection of 97.9% and 100%, respectively. The sensitivity for variant detection was notably better than the 88.3% achieved by whole exome sequencing (WES) using the same metrics, due to better coverage of targeted genes in the GEDi test compared to commercially available exome capture sets. Prospective testing of 192 patients with IRDs indicated that the clinical sensitivity of the GEDi test is high, with a diagnostic rate of 51%. Conclusion The data suggest that based on quantified performance metrics, selective targeted enrichment is preferable to WES for genetic diagnostic testing. PMID:25412400

  12. Tuning of Strouhal number for high propulsive efficiency accurately predicts how wingbeat frequency and stroke amplitude relate and scale with size and flight speed in birds.

    PubMed Central

    Nudds, Robert L.; Taylor, Graham K.; Thomas, Adrian L. R.

    2004-01-01

    The wing kinematics of birds vary systematically with body size, but we still, after several decades of research, lack a clear mechanistic understanding of the aerodynamic selection pressures that shape them. Swimming and flying animals have recently been shown to cruise at Strouhal numbers (St) corresponding to a regime of vortex growth and shedding in which the propulsive efficiency of flapping foils peaks (St approximately fA/U, where f is wingbeat frequency, U is cruising speed and A approximately bsin(theta/2) is stroke amplitude, in which b is wingspan and theta is stroke angle). We show that St is a simple and accurate predictor of wingbeat frequency in birds. The Strouhal numbers of cruising birds have converged on the lower end of the range 0.2 < St < 0.4 associated with high propulsive efficiency. Stroke angle scales as theta approximately 67b-0.24, so wingbeat frequency can be predicted as f approximately St.U/bsin(33.5b-0.24), with St0.21 and St0.25 for direct and intermittent fliers, respectively. This simple aerodynamic model predicts wingbeat frequency better than any other relationship proposed to date, explaining 90% of the observed variance in a sample of 60 bird species. Avian wing kinematics therefore appear to have been tuned by natural selection for high aerodynamic efficiency: physical and physiological constraints upon wing kinematics must be reconsidered in this light. PMID:15451698

  13. Development and clinical evaluation of a highly accurate dengue NS1 rapid test: from the preparation of a soluble NS1 antigen to the construction of an RDT.

    PubMed

    Lee, Jihoo; Kim, Hak-Yong; Chong, Chom-Kyu; Song, Hyun-Ok

    2015-06-01

    Early diagnosis of dengue virus (DENV) is important. There are numerous products on the market claiming to detect DENV NS1, but these are not always reliable. In this study, a highly sensitive and accurate rapid diagnostic test (RDT) was developed using anti-dengue NS1 monoclonal antibodies. A recombinant NS1 protein was produced with high antigenicity and purity. Monoclonal antibodies were raised against this purified NS1 antigen. The RDT was constructed using a capturing (4A6A10, Kd=7.512±0.419×10(-9)) and a conjugating antibody (3E12E6, Kd=7.032±0.322×10(-9)). The diagnostic performance was evaluated with NS1-positive clinical samples collected from various dengue endemic countries and compared to SD BioLine Dengue NS1 Ag kit. The constructed RDT exhibited higher sensitivity (92.9%) with more obvious diagnostic performance than the commercial kit (83.3%). The specificity of constructed RDT was 100%. The constructed RDT could offer a reliable point-of-care testing tool for the early detection of dengue infections in remote areas and contribute to the control of dengue-related diseases. PMID:25824725

  14. Development and clinical evaluation of a highly accurate dengue NS1 rapid test: from the preparation of a soluble NS1 antigen to the construction of an RDT.

    PubMed

    Lee, Jihoo; Kim, Hak-Yong; Chong, Chom-Kyu; Song, Hyun-Ok

    2015-06-01

    Early diagnosis of dengue virus (DENV) is important. There are numerous products on the market claiming to detect DENV NS1, but these are not always reliable. In this study, a highly sensitive and accurate rapid diagnostic test (RDT) was developed using anti-dengue NS1 monoclonal antibodies. A recombinant NS1 protein was produced with high antigenicity and purity. Monoclonal antibodies were raised against this purified NS1 antigen. The RDT was constructed using a capturing (4A6A10, Kd=7.512±0.419×10(-9)) and a conjugating antibody (3E12E6, Kd=7.032±0.322×10(-9)). The diagnostic performance was evaluated with NS1-positive clinical samples collected from various dengue endemic countries and compared to SD BioLine Dengue NS1 Ag kit. The constructed RDT exhibited higher sensitivity (92.9%) with more obvious diagnostic performance than the commercial kit (83.3%). The specificity of constructed RDT was 100%. The constructed RDT could offer a reliable point-of-care testing tool for the early detection of dengue infections in remote areas and contribute to the control of dengue-related diseases.

  15. Spatial Patterns of High Aedes aegypti Oviposition Activity in Northwestern Argentina

    PubMed Central

    Estallo, Elizabet Lilia; Más, Guillermo; Vergara-Cid, Carolina; Lanfri, Mario Alberto; Ludueña-Almeida, Francisco; Scavuzzo, Carlos Marcelo; Introini, María Virginia; Zaidenberg, Mario; Almirón, Walter Ricardo

    2013-01-01

    Background In Argentina, dengue has affected mainly the Northern provinces, including Salta. The objective of this study was to analyze the spatial patterns of high Aedes aegypti oviposition activity in San Ramón de la Nueva Orán, northwestern Argentina. The location of clusters as hot spot areas should help control programs to identify priority areas and allocate their resources more effectively. Methodology Oviposition activity was detected in Orán City (Salta province) using ovitraps, weekly replaced (October 2005–2007). Spatial autocorrelation was measured with Moran’s Index and depicted through cluster maps to identify hot spots. Total egg numbers were spatially interpolated and a classified map with Ae. aegypti high oviposition activity areas was performed. Potential breeding and resting (PBR) sites were geo-referenced. A logistic regression analysis of interpolated egg numbers and PBR location was performed to generate a predictive mapping of mosquito oviposition activity. Principal Findings Both cluster maps and predictive map were consistent, identifying in central and southern areas of the city high Ae. aegypti oviposition activity. A logistic regression model was successfully developed to predict Ae. aegypti oviposition activity based on distance to PBR sites, with tire dumps having the strongest association with mosquito oviposition activity. A predictive map reflecting probability of oviposition activity was produced. The predictive map delimitated an area of maximum probability of Ae. aegypti oviposition activity in the south of Orán city where tire dumps predominate. The overall fit of the model was acceptable (ROC = 0.77), obtaining 99% of sensitivity and 75.29% of specificity. Conclusions Distance to tire dumps is inversely associated with high mosquito activity, allowing us to identify hot spots. These methodologies are useful for prevention, surveillance, and control of tropical vector borne diseases and might assist National Health

  16. Time-Accurate Local Time Stepping and High-Order Time CESE Methods for Multi-Dimensional Flows Using Unstructured Meshes

    NASA Technical Reports Server (NTRS)

    Chang, Chau-Lyan; Venkatachari, Balaji Shankar; Cheng, Gary

    2013-01-01

    With the wide availability of affordable multiple-core parallel supercomputers, next generation numerical simulations of flow physics are being focused on unsteady computations for problems involving multiple time scales and multiple physics. These simulations require higher solution accuracy than most algorithms and computational fluid dynamics codes currently available. This paper focuses on the developmental effort for high-fidelity multi-dimensional, unstructured-mesh flow solvers using the space-time conservation element, solution element (CESE) framework. Two approaches have been investigated in this research in order to provide high-accuracy, cross-cutting numerical simulations for a variety of flow regimes: 1) time-accurate local time stepping and 2) highorder CESE method. The first approach utilizes consistent numerical formulations in the space-time flux integration to preserve temporal conservation across the cells with different marching time steps. Such approach relieves the stringent time step constraint associated with the smallest time step in the computational domain while preserving temporal accuracy for all the cells. For flows involving multiple scales, both numerical accuracy and efficiency can be significantly enhanced. The second approach extends the current CESE solver to higher-order accuracy. Unlike other existing explicit high-order methods for unstructured meshes, the CESE framework maintains a CFL condition of one for arbitrarily high-order formulations while retaining the same compact stencil as its second-order counterpart. For large-scale unsteady computations, this feature substantially enhances numerical efficiency. Numerical formulations and validations using benchmark problems are discussed in this paper along with realistic examples.

  17. Assessing NO2 variability over urban areas at high spatial resolution

    NASA Astrophysics Data System (ADS)

    Silverman, M. L.; Szykman, J.; Knepp, T. N.; Chen, G.; Crawford, J. H.; Janz, S. J.; Kowalewski, M. G.; Fishman, J.

    2013-12-01

    Nitrogen dioxide (NO2) is a short-lived species within the troposphere, contributing to the production of ozone and aerosols. It is concentrated in urban and industrial areas where an abundance of point and mobile sources exist. Due to its short lifetime, it is difficult to capture the variability of NO2 and represent it within atmospheric chemistry transport models. Understanding this variability is important for emission controls, health impacts, and photochemistry. This analysis uses in situ aircraft measurements collected during ARCTAS-CARB, ICARTT, TexAQS-2000, TexAQS-2006, and DISCOVER-AQ as well as high spatial resolution column measurements of NO2 from the NASA GSFC Airborne Compact Atmospheric Mapper (ACAM) instrument collected during the first DISCOVER-AQ deployment, to assess the variability over urban areas. First order structure functions are used to generate statistics over a range of spatial scales. Column density is calculated from the DISCOVER-AQ profiles to assess the variability of a column within the aircraft profile. Results show that spatial variability depends on the airmass being sampled, polluted versus background conditions.

  18. Practical Considerations for High Spatial and Temporal Resolution Dynamic Transmission Electron Microscopy

    SciTech Connect

    Armstrong, M; Boyden, K; Browning, N D; Campbell, G H; Colvin, J D; DeHope, B; Frank, A M; Gibson, D J; Hartemann, F; Kim, J S; King, W E; LaGrange, T B; Pyke, B J; Reed, B W; Shuttlesworth, R M; Stuart, B C; Torralva, B R

    2006-05-01

    Although recent years have seen significant advances in the spatial resolution possible in the transmission electron microscope (TEM), the temporal resolution of most microscopes is limited to video rate at best. This lack of temporal resolution means that our understanding of dynamic processes in materials is extremely limited. High temporal resolution in the TEM can be achieved, however, by replacing the normal thermionic or field emission source with a photoemission source. In this case the temporal resolution is limited only by the ability to create a short pulse of photoexcited electrons in the source, and this can be as short as a few femtoseconds. The operation of the photo-emission source and the control of the subsequent pulse of electrons (containing as many as 5 x 10{sup 7} electrons) create significant challenges for a standard microscope column that is designed to operate with a single electron in the column at any one time. In this paper, the generation and control of electron pulses in the TEM to obtain a temporal resolution <10{sup -6} s will be described and the effect of the pulse duration and current density on the spatial resolution of the instrument will be examined. The potential of these levels of temporal and spatial resolution for the study of dynamic materials processes will also be discussed.

  19. An optical setup for electric field measurements in MRI with high spatial resolution

    NASA Astrophysics Data System (ADS)

    Reiss, Simon; Bitzer, Andreas; Bock, Michael

    2015-06-01

    Electric field measurements in the magnetic resonance (MR) imaging environment are important to assess potentially dangerous radio-frequency (RF) heating in the vicinity of metallic structures such as coils, implants or catheters. So far, E-field measurements have been performed with dipole antennas that lag of limited spatial resolution and which are difficult to use in the magnet bore as they interfere with the RF transmit field of the MRI system. In this work an electro-optic sensor is presented that utilizes the Pockels effect to measure the E-field in a clinical MR system with high spatial resolution. This sensor consists of dielectric materials only and thus, it only minimally influences the measured E-field distribution. A 10 m long flexible optical fiber connects the small sensor head to a remote processing unit where the optical signal is transformed into an electrical output signal. Spatially resolved qualitative E-field measurements were performed in a 1.5 T clinical MR system in the vicinity of metallic samples and an active tracking catheter with a resolution of up to 1 mm. The near-field pattern of a resonant U-shaped metallic sample was clearly identified and compared with numerical simulations. A more complex field behavior was found for the tracking catheter where strong E-field enhancements were observed at the distal tip and at its proximal part outside the phantom solution. Due to its sub-mm spatial resolution the optical sensor approach provides detailed insight into the complex and difficult to access field distributions close to implants and metallic structures and has turned out to be promising tool for MRI field and safety inspections.

  20. An optical setup for electric field measurements in MRI with high spatial resolution.

    PubMed

    Reiss, Simon; Bitzer, Andreas; Bock, Michael

    2015-06-01

    Electric field measurements in the magnetic resonance (MR) imaging environment are important to assess potentially dangerous radio-frequency (RF) heating in the vicinity of metallic structures such as coils, implants or catheters. So far, E-field measurements have been performed with dipole antennas that lag of limited spatial resolution and which are difficult to use in the magnet bore as they interfere with the RF transmit field of the MRI system. In this work an electro-optic sensor is presented that utilizes the Pockels effect to measure the E-field in a clinical MR system with high spatial resolution. This sensor consists of dielectric materials only and thus, it only minimally influences the measured E-field distribution. A 10 m long flexible optical fiber connects the small sensor head to a remote processing unit where the optical signal is transformed into an electrical output signal. Spatially resolved qualitative E-field measurements were performed in a 1.5 T clinical MR system in the vicinity of metallic samples and an active tracking catheter with a resolution of up to 1 mm. The near-field pattern of a resonant U-shaped metallic sample was clearly identified and compared with numerical simulations. A more complex field behavior was found for the tracking catheter where strong E-field enhancements were observed at the distal tip and at its proximal part outside the phantom solution. Due to its sub-mm spatial resolution the optical sensor approach provides detailed insight into the complex and difficult to access field distributions close to implants and metallic structures and has turned out to be promising tool for MRI field and safety inspections. PMID:25984961

  1. An Automated High-Throughput Metabolic Stability Assay Using an Integrated High-Resolution Accurate Mass Method and Automated Data Analysis Software.

    PubMed

    Shah, Pranav; Kerns, Edward; Nguyen, Dac-Trung; Obach, R Scott; Wang, Amy Q; Zakharov, Alexey; McKew, John; Simeonov, Anton; Hop, Cornelis E C A; Xu, Xin

    2016-10-01

    Advancement of in silico tools would be enabled by the availability of data for metabolic reaction rates and intrinsic clearance (CLint) of a diverse compound structure data set by specific metabolic enzymes. Our goal is to measure CLint for a large set of compounds with each major human cytochrome P450 (P450) isozyme. To achieve our goal, it is of utmost importance to develop an automated, robust, sensitive, high-throughput metabolic stability assay that can efficiently handle a large volume of compound sets. The substrate depletion method [in vitro half-life (t1/2) method] was chosen to determine CLint The assay (384-well format) consisted of three parts: 1) a robotic system for incubation and sample cleanup; 2) two different integrated, ultraperformance liquid chromatography/mass spectrometry (UPLC/MS) platforms to determine the percent remaining of parent compound, and 3) an automated data analysis system. The CYP3A4 assay was evaluated using two long t1/2 compounds, carbamazepine and antipyrine (t1/2 > 30 minutes); one moderate t1/2 compound, ketoconazole (10 < t1/2 < 30 minutes); and two short t1/2 compounds, loperamide and buspirone (t½ < 10 minutes). Interday and intraday precision and accuracy of the assay were within acceptable range (∼12%) for the linear range observed. Using this assay, CYP3A4 CLint and t1/2 values for more than 3000 compounds were measured. This high-throughput, automated, and robust assay allows for rapid metabolic stability screening of large compound sets and enables advanced computational modeling for individual human P450 isozymes. PMID:27417180

  2. An Automated High-Throughput Metabolic Stability Assay Using an Integrated High-Resolution Accurate Mass Method and Automated Data Analysis Software

    PubMed Central

    Shah, Pranav; Kerns, Edward; Nguyen, Dac-Trung; Obach, R. Scott; Wang, Amy Q.; Zakharov, Alexey; McKew, John; Simeonov, Anton; Hop, Cornelis E. C. A.

    2016-01-01

    Advancement of in silico tools would be enabled by the availability of data for metabolic reaction rates and intrinsic clearance (CLint) of a diverse compound structure data set by specific metabolic enzymes. Our goal is to measure CLint for a large set of compounds with each major human cytochrome P450 (P450) isozyme. To achieve our goal, it is of utmost importance to develop an automated, robust, sensitive, high-throughput metabolic stability assay that can efficiently handle a large volume of compound sets. The substrate depletion method [in vitro half-life (t1/2) method] was chosen to determine CLint. The assay (384-well format) consisted of three parts: 1) a robotic system for incubation and sample cleanup; 2) two different integrated, ultraperformance liquid chromatography/mass spectrometry (UPLC/MS) platforms to determine the percent remaining of parent compound, and 3) an automated data analysis system. The CYP3A4 assay was evaluated using two long t1/2 compounds, carbamazepine and antipyrine (t1/2 > 30 minutes); one moderate t1/2 compound, ketoconazole (10 < t1/2 < 30 minutes); and two short t1/2 compounds, loperamide and buspirone (t½ < 10 minutes). Interday and intraday precision and accuracy of the assay were within acceptable range (∼12%) for the linear range observed. Using this assay, CYP3A4 CLint and t1/2 values for more than 3000 compounds were measured. This high-throughput, automated, and robust assay allows for rapid metabolic stability screening of large compound sets and enables advanced computational modeling for individual human P450 isozymes. PMID:27417180

  3. Spatial Dynamics and High Risk Transmission Pathways of Poliovirus in Nigeria 2001-2013

    PubMed Central

    Mangal, Tara D.; Aylward, R. Bruce; Shuaib, Faisal; Mwanza, Michael; Pate, Muhammed A.; Abanida, Emmanuel; Grassly, Nicholas C.

    2016-01-01

    The polio eradication programme in Nigeria has been successful in reducing incidence to just six confirmed cases in 2014 and zero to date in 2015, but prediction and management of future outbreaks remains a concern. A Poisson mixed effects model was used to describe poliovirus spread between January 2001 and November 2013, incorporating the strength of connectivity between districts (local government areas, LGAs) as estimated by three models of human mobility: simple distance, gravity and radiation models. Potential explanatory variables associated with the case numbers in each LGA were investigated and the model fit was tested by simulation. Spatial connectivity, the number of non-immune children under five years old, and season were associated with the incidence of poliomyelitis in an LGA (all P < 0.001). The best-fitting spatial model was the radiation model, outperforming the simple distance and gravity models (likelihood ratio test P < 0.05), under which the number of people estimated to move from an infected LGA to an uninfected LGA was strongly associated with the incidence of poliomyelitis in that LGA. We inferred transmission networks between LGAs based on this model and found these to be highly local, largely restricted to neighbouring LGAs (e.g. 67.7% of secondary spread from Kano was expected to occur within 10 km). The remaining secondary spread occurred along routes of high population movement. Poliovirus transmission in Nigeria is predominantly localised, occurring between spatially contiguous areas. Outbreak response should be guided by knowledge of high-probability pathways to ensure vulnerable children are protected. PMID:27668435

  4. Climate Change Driven Implications on Spatial Distribution of High Andean Peatlands in the Central Andes

    NASA Astrophysics Data System (ADS)

    Otto, Marco; Gibbons, Richard E.

    2013-04-01

    High Andean peatlands are among the most unique habitats in the tropical Andes and certainly among the least studied. High Andean peatlands occur patchily in montane grassland and scrub below snow line and above tree line. These high-elevation peatlands are sustained by glacial runoff and seasonal precipitation. We used remote sensing data to estimate that peatland habitat is approximately 2.5 % of our study region in the Puna, an ecoregion located in the high Andes above 4000 m a.s.l. Individual sizes of our estimated peatland polygons ranged from 0.72 ha to 1079 ha with a mean size of 4.9 ha. Climate change driven implications on spatial distribution of high Andean peatlands were assessed in two ways. First, we estimated the effect of predicted regional temperature increase by using the standard lapse rate of 2° C per 300 m for assessing peatland habitat patches that would remain above a critical thermocline. Nearly 80% of peatland habitat patches were predicted to occur below the thermocline if the prediction of 4° C temperature increase is realized. The second assessment relied on the quantified assumption that permanent snow or glacier cover, topographic characteristics (e.g. slope) and precipitation of a basin are essential variables in the occurrence of high Andean peatlands. All 17 basins were predicted to have a decrease in peatland habitat due to snow line uplift, decrease in precipitation and consequent insufficient wetland inflows. Total habitat loss was predicted for two basins in the semi-arid part of the study area with a snow line uplift to 5600 m and a projected decrease in precipitation of 1 mm per year over the next 40 years. A combined result of both assessments provides important information on climate change driven implications on the hydrology of high Andean peatlands and potential consequences for their spatial distribution within the Central Andes.

  5. Improving urban land use and land cover classification from high-spatial-resolution hyperspectral imagery using contextual information

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In this paper, we propose approaches to improve the pixel-based support vector machine (SVM) classification for urban land use and land cover (LULC) mapping from airborne hyperspectral imagery with high spatial resolution. Class spatial neighborhood relationship is used to correct the misclassified ...

  6. Accurate and high-resolution boundary conditions and flow fields in the first-class cabin of an MD-82 commercial airliner

    NASA Astrophysics Data System (ADS)

    Liu, Wei; Wen, Jizhou; Chao, Jiangyue; Yin, Weiyou; Shen, Chen; Lai, Dayi; Lin, Chao-Hsin; Liu, Junjie; Sun, Hejiang; Chen, Qingyan

    2012-09-01

    Flow fields in commercial airliner cabins are crucial for creating a thermally comfortable and healthy cabin environment. Flow fields depend on the thermo-fluid boundary conditions at the diffusers, in addition to the cabin geometry and furnishing. To study the flow fields in cabins, this paper describes a procedure to obtain the cabin geometry, boundary conditions at the diffusers, and flow fields. This investigation used a laser tracking system and reverse engineering to generate a digital model of an MD-82 aircraft cabin. Even though the measuring error by the system was very small, approximations and assumptions were needed to reduce the workload and data size. The geometric model can also be easily used to calculate the space volume. A combination of hot-sphere anemometers (HSA) and ultrasonic anemometers (UA) were applied to obtain the velocity magnitude, velocity direction, and turbulence intensity at the diffusers. The measured results indicate that the flow boundary conditions in a real cabin were rather complex and the velocity magnitude, velocity direction, and turbulence intensity varied significantly from one slot opening to another. UAs were also applied to measure the three-dimensional air velocity at 20 Hz, which could also be used to determine the turbulence intensity. Due to the instability of the flow, it should at least be measured for 4 min to obtain accurate averaged velocity and turbulence information. It was found that the flow fields were of low speed and high turbulence intensity. This study provides high quality data for validating Computational Fluid Dynamics (CFD) models, including cabin geometry, boundary conditions of diffusers, and high-resolution flow field in the first-class cabin of a functional MD-82 commercial airliner.

  7. Redox and speciation mapping of rock thin sections using high spatial resolution full-field imaging technique

    NASA Astrophysics Data System (ADS)

    de Andrade, V.; Susini, J.; Salomé, M.; Beraldin, O.; Heymes, T.; Lewin, E.

    2009-04-01

    Because of their complex genesis, natural rocks are the most often heterogeneous systems, with various scale-level heterogeneities for both chemistry and structure. In the last decade, the dramatic improvements of hyperspectral imaging techniques provided new tools for accurate material characterisation. Most of these micro- and nano- analytical techniques rely on scanning instruments, which offer high spatial resolution but suffer from long acquisition times imposing practical limits on the field of view. Conversely, full-field imaging techniques rely on a fast pa