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Sample records for acidic coiled coil

  1. Repeats in transforming acidic coiled-coil (TACC) genes.

    PubMed

    Trivedi, Seema

    2013-06-01

    Transforming acidic coiled-coil proteins (TACC1, 2, and 3) are essential proteins associated with the assembly of spindle microtubules and maintenance of bipolarity. Dysregulation of TACCs is associated with tumorigenesis, but studies of microsatellite instability in TACC genes have not been extensive. Microsatellite or simple sequence repeat instability is known to cause many types of cancer. The present in silico analysis of SSRs in human TACC gene sequences shows the presence of mono- to hexa-nucleotide repeats, with the highest densities found for mono- and di-nucleotide repeats. Density of repeats is higher in introns than in exons. Some of the repeats are present in regulatory regions and retained introns. Human TACC genes show conservation of many repeat classes. Microsatellites in TACC genes could be valuable markers for monitoring numerical chromosomal aberrations and or cancer.

  2. Coiled coil interactions for the targeting of liposomes for nucleic acid delivery

    NASA Astrophysics Data System (ADS)

    Oude Blenke, Erik E.; van den Dikkenberg, Joep; van Kolck, Bartjan; Kros, Alexander; Mastrobattista, Enrico

    2016-04-01

    Coiled coil interactions are strong protein-protein interactions that are involved in many biological processes, including intracellular trafficking and membrane fusion. A synthetic heterodimeric coiled-coil forming peptide pair, known as E3 (EIAALEK)3 and K3 (KIAALKE)3 was used to functionalize liposomes encapsulating a splice correcting oligonucleotide or siRNA. These peptide-functionalized vesicles are highly stable in solution but start to cluster when vesicles modified with complementary peptides are mixed together, demonstrating that the peptides quickly coil and crosslink the vesicles. When one of the peptides was anchored to the cell membrane using a hydrophobic cholesterol anchor, vesicles functionalized with the complementary peptide could be docked to these cells, whereas non-functionalized cells did not show any vesicle tethering. Although the anchored peptides do not have a downstream signaling pathway, microscopy pictures revealed that after four hours, the majority of the docked vesicles were internalized by endocytosis. Finally, for the first time, it was shown that the coiled coil assembly at the interface between the vesicles and the cell membrane induces active uptake and leads to cytosolic delivery of the nucleic acid cargo. Both the siRNA and the splice correcting oligonucleotide were functionally delivered, resulting respectively in the silencing or recovery of luciferase expression in the appropriate cell lines. These results demonstrate that the docking to the cell by coiled coil interaction can induce active uptake and achieve the successful intracellular delivery of otherwise membrane impermeable nucleic acids in a highly specific manner.Coiled coil interactions are strong protein-protein interactions that are involved in many biological processes, including intracellular trafficking and membrane fusion. A synthetic heterodimeric coiled-coil forming peptide pair, known as E3 (EIAALEK)3 and K3 (KIAALKE)3 was used to functionalize liposomes

  3. A classic zinc finger from friend of GATA mediates an interaction with the coiled-coil of transforming acidic coiled-coil 3.

    PubMed

    Simpson, Raina J Y; Yi Lee, Stella Hoi; Bartle, Natalie; Sum, Eleanor Y; Visvader, Jane E; Matthews, Jacqueline M; Mackay, Joel P; Crossley, Merlin

    2004-09-17

    Classic zinc finger domains (cZFs) consist of a beta-hairpin followed by an alpha-helix. They are among the most abundant of all protein domains and are often found in tandem arrays in DNA-binding proteins, with each finger contributing an alpha-helix to effect sequence-specific DNA recognition. Lone cZFs, not found in tandem arrays, have been postulated to function in protein interactions. We have studied the transcriptional co-regulator Friend of GATA (FOG), which contains nine zinc fingers. We have discovered that the third cZF of FOG contacts a coiled-coil domain in the centrosomal protein transforming acidic coiled-coil 3 (TACC3). Although FOG-ZF3 exhibited low solubility, we have used a combination of mutational mapping and protein engineering to generate a derivative that was suitable for in vitro and structural analysis. We report that the alpha-helix of FOG-ZF3 recognizes a C-terminal portion of the TACC3 coiled-coil. Remarkably, the alpha-helical surface utilized by FOG-ZF3 is the same surface responsible for the well established sequence-specific DNA-binding properties of many other cZFs. Our data demonstrate the versatility of cZFs and have implications for the analysis of many as yet uncharacterized cZF proteins.

  4. Pulse Coil Tester

    NASA Technical Reports Server (NTRS)

    Simon, Richard A.

    1988-01-01

    Set of relays tested easily and repeatedly. Pulse coil tester causes coil under test to generate transient voltage; waveform indicates condition of coil. Tester accommodates assembly of up to four coils at a time.

  5. Coiled-Coil Design: Updated and Upgraded.

    PubMed

    Woolfson, Derek N

    2017-01-01

    α-Helical coiled coils are ubiquitous protein-folding and protein-interaction domains in which two or more α-helical chains come together to form bundles. Through a combination of bioinformatics analysis of many thousands of natural coiled-coil sequences and structures, plus empirical protein engineering and design studies, there is now a deep understanding of the sequence-to-structure relationships for this class of protein architecture. This has led to considerable success in rational design and what might be termed in biro de novo design of simple coiled coils, which include homo- and hetero-meric parallel dimers, trimers and tetramers. In turn, these provide a toolkit for directing the assembly of both natural proteins and more complex designs in protein engineering, materials science and synthetic biology. Moving on, the increased and improved use of computational design is allowing access to coiled-coil structures that are rare or even not observed in nature, for example α-helical barrels, which comprise five or more α-helices and have central channels into which different functions may be ported. This chapter reviews all of these advances, outlining improvements in our knowledge of the fundamentals of coiled-coil folding and assembly, and highlighting new coiled coil-based materials and applications that this new understanding is opening up. Despite considerable progress, however, challenges remain in coiled-coil design, and the next decade promises to be as productive and exciting as the last.

  6. Coil Welding Aid

    NASA Technical Reports Server (NTRS)

    Wiesenbach, W. T.; Clark, M. C.

    1983-01-01

    Positioner holds coil inside cylinder during tack welding. Welding aid spaces turns of coil inside cylinder and applies contact pressure while coil is tack-welded to cylinder. Device facilitates fabrication of heat exchangers and other structures by eliminating hand-positioning and clamping of individual coil turns.

  7. Acidic pH triggers conformational changes at the NH2-terminal propeptide of the precursor of pulmonary surfactant protein B to form a coiled coil structure.

    PubMed

    Bañares-Hidalgo, A; Pérez-Gil, J; Estrada, P

    2014-07-01

    Pulmonary surfactant protein SP-B is synthesized as a larger precursor, proSP-B. We report that a recombinant form of human SP-BN forms a coiled coil structure at acidic pH. The protonation of a residue with pK=4.8±0.06 is the responsible of conformational changes detected by circular dichroism and intrinsic fluorescence emission. Sedimentation velocity analysis showed protein oligomerisation at any pH condition, with an enrichment of the species compatible with a tetramer at acidic pH. Low 2,2,2,-trifluoroethanol concentration promoted β-sheet structures in SP-BN, which bind Thioflavin T, at acidic pH, whereas it promoted coiled coil structures at neutral pH. The amino acid stretch predicted to form β-sheet parallel association in SP-BN overlaps with the sequence predicted by several programs to form coiled coil structure. A synthetic peptide ((60)W-E(85)) designed from the sequence of the amino acid stretch of SP-BN predicted to form coiled coil structure showed random coil conformation at neutral pH but concentration-dependent helical structure at acidic pH. Sedimentation velocity analysis of the peptide indicated monomeric state at neutral pH (s20, w=0.55S; Mr~3kDa) and peptide association (s20, w=1.735S; Mr=~14kDa) at acidic pH, with sedimentation equilibrium fitting to a Monomer-Nmer-Mmer model with N=6 and M=4 (Mr=14692Da). We propose that protein oligomerisation through coiled-coil motifs could then be a general feature in the assembly of functional units in saposin-like proteins in general and in the organization of SP-B in a functional surfactant, in particular.

  8. Protective link for superconducting coil

    DOEpatents

    Umans, Stephen D.

    2009-12-08

    A superconducting coil system includes a superconducting coil and a protective link of superconducting material coupled to the superconducting coil. A rotating machine includes first and second coils and a protective link of superconducting material. The second coil is operable to rotate with respect to the first coil. One of the first and second coils is a superconducting coil. The protective link is coupled to the superconducting coil.

  9. Coiling of viscous jets

    NASA Astrophysics Data System (ADS)

    Ribe, Neil M.

    2004-11-01

    A stream of viscous fluid falling from a sufficient height onto a surface forms a series of regular coils. I use a numerical model for a deformable fluid thread to predict the coiling frequency as a function of the thread's radius, the flow rate, the fall height, and the fluid viscosity. Three distinct modes of coiling can occur: viscous (e.g. toothpaste), gravitational (honey falling from a moderate height) and inertial (honey falling from a great height). When inertia is significant, three states of steady coiling with different frequencies can exist over a range of fall heights. The numerically predicted coiling frequencies agree well with experimental measurements in the inertial coiling regime.

  10. Insights on the structure and stability of Licanantase: a trimeric acid-stable coiled-coil lipoprotein from Acidithiobacillus thiooxidans.

    PubMed

    Abarca, Fernando; Gutierrez-Maldonado, Sebastian E; Parada, Pilar; Martinez, Patricio; Maass, Alejandro; Perez-Acle, Tomas

    2014-01-01

    Licanantase (Lic) is the major component of the secretome of Acidithiobacillus thiooxidans when grown in elemental sulphur. When used as an additive, Lic improves copper recovery from bioleaching processes. However, this recovery enhancement is not fully understood. In this context, our aim is to predict the 3D structure of Lic, to shed light on its structure-function relationships. Bioinformatics analyses on the amino acid sequence of Lic showed a great similarity with Lpp, an Escherichia coli Lipoprotein that can form stable trimers in solution. Lic and Lpp share the secretion motif, intracellular processing and alpha helix structure, as well as the distribution of hydrophobic residues in heptads forming a hydrophobic core, typical of coiled-coil structures. Cross-linking experiments showed the presence of Lic trimers, supporting our predictions. Taking the in vitro and in silico evidence as a whole, we propose that the most probable structure for Lic is a trimeric coiled-coil. According to this prediction, a suitable model for Lic was produced using the de novo algorithm "Rosetta Fold-and-Dock". To assess the structural stability of our model, Molecular Dynamics (MD) and Replica Exchange MD simulations were performed using the structure of Lpp and a 14-alanine Lpp mutant as controls, at both acidic and neutral pH. Our results suggest that Lic was the most stable structure among the studied proteins in both pH conditions. This increased stability can be explained by a higher number of both intermonomer hydrophobic contacts and hydrogen bonds, key elements for the stability of Lic's secondary and tertiary structure.

  11. Immune responses to coiled coil supramolecular biomaterials.

    PubMed

    Rudra, Jai S; Tripathi, Pulak K; Hildeman, David A; Jung, Jangwook P; Collier, Joel H

    2010-11-01

    Self-assembly has been increasingly utilized in recent years to create peptide-based biomaterials for 3D cell culture, tissue engineering, and regenerative medicine, but the molecular determinants of these materials' immunogenicity have remained largely unexplored. In this study, a set of molecules that self-assembled through coiled coil oligomerization was designed and synthesized, and immune responses against them were investigated in mice. Experimental groups spanned a range of oligomerization behaviors and included a peptide from the coiled coil region of mouse fibrin that did not form supramolecular structures, an engineered version of this peptide that formed coiled coil bundles, and a peptide-PEG-peptide triblock bioconjugate that formed coiled coil multimers and supramolecular aggregates. In mice, the native peptide and engineered peptide did not produce any detectable antibody response, and none of the materials elicited detectable peptide-specific T cell responses, as evidenced by the absence of IL-2 and interferon-gamma in cultures of peptide-challenged splenocytes or draining lymph node cells. However, specific antibody responses were elevated in mice injected with the multimerizing peptide-PEG-peptide. Minimal changes in secondary structure were observed between the engineered peptide and the triblock peptide-PEG-peptide, making it possible that the triblock's multimerization was responsible for this antibody response.

  12. TPX correction coil studies

    SciTech Connect

    Hanson, J.D.

    1994-11-03

    Error correction coils are planned for the TPX (Tokamak Plasma Experiment) in order to avoid error field induced locked modes and disruption. The FT (Fix Tokamak) code is used to evaluate the ability of these correction coils to remove islands caused by symmetry breaking magnetic field errors. The proposed correction coils are capable of correcting a variety of error fields.

  13. NCSX Trim Coil Design

    SciTech Connect

    M. Kalish, A. Brooks, J. Rushinski, R. Upcavage

    2009-05-29

    The National Compact Stellarator Experiment (NCSX) was being constructed at the Princeton Plasma Physics Laboratory in partnership with Oak Ridge National Laboratory before work was stopped in 2008. The objective of this experiment was to develop the stellarator concept and evaluate it's potential as a model for future fusion power plants. Stellarator design requires very precisely positioned Modular Coils of complex shape to form 3D plasmas. In the design of NCSX, Trim Coils were required to compensate for both the positioning of the coils during assembly and the fabrication tolerances of the Modular Coils. Use of the Trim Coils allowed for larger tolerances increasing ease of assembly and decreasing overall cost. A set of Trim coils was developed to suppress the toroidal flux in island regions due to misalignment, magnetic materials, and eddy currents. The requirement imposed upon the design forced the toroidal flux in island regions below 10% of the total toroidal flux in the plasma. An analysis was first performed to evaluate candidate Trim Coil configurations iterating both the size, number, and position of the coils. The design was optimized considering both performance and cost while staying within the tight restraints presented by the space limited geometry. The final design of the Trim Coils incorporated a 48 Coil top bottom symmetric set. Fabrication costs were minimized by having only two coil types and using a planar conventional design with off the shelf commercial conductor. The Trim Coil design incorporated supports made from simple structural shapes assembled together in a way which allowed for adjustment as well as accommodation for the tolerance build up on the mating surfaces. This paper will summarize the analysis that led to the optimization of the Trim Coils set, the trim coil mechanical design, thermal and stress analysis, and the design of the supporting Trim Coil structure.

  14. Concentric Loop Surface Coil

    NASA Astrophysics Data System (ADS)

    Hernández-Flores, R.; Rodríguez-González, A. O.; Salgado-Lujambio, P.; Barrios-Alvarez, F. A.

    2002-08-01

    A surface coil for MRI consisted of two concentric loops was developed for brain imaging. Prior to build the coil prototype, the magnetic field (B1) generated by the coil was numerically simulated. This field simulation is based on the Biot-Savart law for the circular- and square-shaped loops. From these theoretical results, we can appreciate an improvement on the B1 homogeneity. Brain images obtained at 1.5 Tesla show a good sensitivity in a particular region of interest. Also, these images compared well against images obtained with a circular-shaped coil. This receiver coil can generate high quality brain images.

  15. Electromagnetic pump stator coil

    DOEpatents

    Fanning, Alan W.; Dahl, Leslie R.

    1996-01-01

    An electrical stator coil for an electromagnetic pump includes a continuous conductor strip having first and second terminals at opposite ends thereof and an intermediate section disposed therebetween. The strip is configured in first and second coil halves, with the first coil half including a plurality of windings extending from the first terminal to the intermediate section, and the second coil half including a plurality of windings extending from the second terminal to the intermediate section. The first and second coil halves are disposed coaxially, and the first and second terminals are disposed radially inwardly therefrom with the intermediate section being disposed radially outwardly therefrom.

  16. Electromagnetic pump stator coil

    DOEpatents

    Fanning, A.W.; Dahl, L.R.

    1996-06-25

    An electrical stator coil for an electromagnetic pump includes a continuous conductor strip having first and second terminals at opposite ends thereof and an intermediate section disposed therebetween. The strip is configured in first and second coil halves, with the first coil half including a plurality of windings extending from the first terminal to the intermediate section, and the second coil half including a plurality of windings extending from the second terminal to the intermediate section. The first and second coil halves are disposed coaxially, and the first and second terminals are disposed radially inwardly therefrom with the intermediate section being disposed radially outwardly therefrom. 9 figs.

  17. Coiled tubing; Operations and services

    SciTech Connect

    Welch, J.L.; Stephens, R.K. )

    1992-09-01

    This paper reports on coiled tubing units which are used for many types of remedial well operations, including sand plugbacks, cement squeezes, fill cleanouts, underreaming, acid stimulations, and fishing. Fishing operations include removal of inflatable bridge plugs, lock mandrels stuck in profile nipples, coiled tubing, coiled tubing bottomhole assemblies (BHAs) and wireline. Recommended guidelines for selecting candidates, proper tool string configuration and operational techniques are presented here to assist coiled tubing supervisors and company representatives in the planning and implementation of efficient and effective fishing operations. Treatment of these areas are not intended to be exhaustive, but rather generally representative of common applications. Each fishing operation requires individualized analysis and planning.

  18. Coil bobbin for stable superconducting coils

    SciTech Connect

    Kashima, T.; Yamanaka, A.; Nishijima, S.; Okada, T.

    1996-12-31

    The coil bobbin for a.c. coils have been prepared with the high strength polyethylene fiber (DF) reinforced plastics (DFRP) or with hybrid composites reinforced by DF and glass fiber (GF). The coils with the bobbin were found to be markedly stable. The DF has a large negative thermal expansion coefficient and hence the circumferential thermal strain of bobbin can be designed by changing the ratio of DF to GF layer thickness (DF/GF). It was found that the thermal expansion coefficient in the circumferential direction of the outer surface changed from negative to positive with increasing DF/GF and became nearly zero at a DF/GF of approximately 5.1 kA rms class a.c. coils having a bobbin with a negative thermal expansion coefficient or small thermal contraction in the circumferential direction were fabricated and were confirmed to show higher quench current than that with a GFRP bobbin.

  19. Engineered coiled-coil protein microfibers.

    PubMed

    Hume, Jasmin; Sun, Jennifer; Jacquet, Rudy; Renfrew, P Douglas; Martin, Jesse A; Bonneau, Richard; Gilchrist, M Lane; Montclare, Jin Kim

    2014-10-13

    The fabrication of de novo proteins able to self-assemble on the nano- to meso-length scales is critical in the development of protein-based biomaterials in nanotechnology and medicine. Here we report the design and characterization of a protein engineered coiled-coil that not only assembles into microfibers, but also can bind hydrophobic small molecules. Under ambient conditions, the protein forms fibers with nanoscale structure possessing large aspect ratios formed by bundles of α-helical homopentameric assemblies, which further assemble into mesoscale fibers in the presence of curcumin through aggregation. Surprisingly, these biosynthesized fibers are able to form in conditions of remarkably low concentrations. Unlike previously designed coiled-coil fibers, these engineered protein microfibers can bind the small molecule curcumin throughout the assembly, serving as a depot for encapsulation and delivery of other chemical agents within protein-based 3D microenvironments.

  20. Methods for Solving Highly Symmetric de Novo Designed Metalloproteins: Crystallographic Examination of a Novel Three Stranded Coiled Coil structure containing D-amino Acids

    PubMed Central

    Ruckthong, Leela; Stuckey, Jeanne A.; Pecoraro, Vincent L.

    2017-01-01

    The core objective of de Novo metalloprotein design is to define metal-protein relationships that control the structure and function of metal centers by using simplified proteins. An essential requirement to achieve this goal is to obtain high resolution structural data using either NMR or crystallographic studies in order to evaluate successful design. X-ray crystal structures have proved that a four heptad repeat scaffold contained in the three stranded coiled coil (3SCC), called CoilSer, provides an excellent motif for modeling a three Cys binding environment capable of chelating metals into geometries that resemble heavy metal sites in metalloregulatory systems. However, new generations of more complicated designs that feature, for example, a D-amino acid or multiple metal ligand sites in the helical sequence require a more stable construct. In doing so, an extra heptad was introduced into the original CoilSer sequence, yielding a GRAND-CoilSer to retain the 3SCC folding. An apo-(GRAND-CSL12DLL16C)3 crystal structure, designed for Cd(II)S3 complexation, proved to be a well-folded parallel 3SCC. Because this structure is novel, protocols for crystallization, structural determination and refinements of the apo-(GRAND-CSL12DLL16C)3 are described. This report should be generally useful for future crystallographic studies of related coiled coil designs. PMID:27586331

  1. Superconducting magnetic coil

    DOEpatents

    Aized, Dawood; Schwall, Robert E.

    1996-06-11

    A superconducting magnetic coil includes a plurality of sections positioned axially along the longitudinal axis of the coil, each section being formed of an anisotropic high temperature superconductor material wound about a longitudinal axis of the coil and having an associated critical current value that is dependent on the orientation of the magnetic field of the coil. The cross section of the superconductor, or the type of superconductor material, at sections along the axial and radial axes of the coil are changed to provide an increased critical current at those regions where the magnetic field is oriented more perpendicularly to the conductor plane, to thereby increase the critical current at these regions and to maintain an overall higher critical current of the coil.

  2. Superconducting magnetic coil

    DOEpatents

    Aized, D.; Schwall, R.E.

    1999-06-22

    A superconducting magnetic coil includes a plurality of sections positioned axially along the longitudinal axis of the coil, each section being formed of an anisotropic high temperature superconductor material wound about a longitudinal axis of the coil and having an associated critical current value that is dependent on the orientation of the magnetic field of the coil. The cross section of the superconductor, or the type of superconductor material, at sections along the axial and radial axes of the coil are changed to provide an increased critical current at those regions where the magnetic field is oriented more perpendicularly to the conductor plane, to thereby increase the critical current at these regions and to maintain an overall higher critical current of the coil. 15 figs.

  3. Superconducting magnetic coil

    DOEpatents

    Aized, Dawood; Schwall, Robert E.

    1999-06-22

    A superconducting magnetic coil includes a plurality of sections positioned axially along the longitudinal axis of the coil, each section being formed of an anisotropic high temperature superconductor material wound about a longitudinal axis of the coil and having an associated critical current value that is dependent on the orientation of the magnetic field of the coil. The cross section of the superconductor, or the type of superconductor material, at sections along the axial and radial axes of the coil are changed to provide an increased critical current at those regions where the magnetic field is oriented more perpendicularly to the conductor plane, to thereby increase the critical current at these regions and to maintain an overall higher critical current of the coil.

  4. A Parallel Coiled-Coil Tetramer with Offset Helices

    SciTech Connect

    Liu,J.; Deng, Y.; Zheng, Q.; Cheng, C.; Kallenbach, N.; Lu, M.

    2006-01-01

    Specific helix-helix interactions are fundamental in assembling the native state of proteins and in protein-protein interfaces. Coiled coils afford a unique model system for elucidating principles of molecular recognition between {alpha} helices. The coiled-coil fold is specified by a characteristic seven amino acid repeat containing hydrophobic residues at the first (a) and fourth (d) positions. Nonpolar side chains spaced three and four residues apart are referred to as the 3-4 hydrophobic repeat. The presence of apolar amino acids at the e or g positions (corresponding to a 3-3-1 hydrophobic repeat) can provide new possibilities for close-packing of {alpha}-helices that includes examples such as the lac repressor tetramerization domain. Here we demonstrate that an unprecedented coiled-coil interface results from replacement of three charged residues at the e positions in the dimeric GCN4 leucine zipper by nonpolar valine side chains. Equilibrium circular dichroism and analytical ultracentrifugation studies indicate that the valine-containing mutant forms a discrete {alpha}-helical tetramer with a significantly higher stability than the parent leucine-zipper molecule. The 1.35 {angstrom} resolution crystal structure of the tetramer reveals a parallel four-stranded coiled coil with a three-residue interhelical offset. The local packing geometry of the three hydrophobic positions in the tetramer conformation is completely different from that seen in classical tetrameric structures yet bears resemblance to that in three-stranded coiled coils. These studies demonstrate that distinct van der Waals interactions beyond the a and d side chains can generate a diverse set of helix-helix interfaces and three-dimensional supercoil structures.

  5. Coiling Viscous Jets

    NASA Astrophysics Data System (ADS)

    Mahadevan, L.

    1996-11-01

    A thin stream of glycerine or other viscous fluid poured onto a horizontal plane from a sufficient height piles up in a regular coil. In its steady state, this motion is analogous to the coiling of a flexible rope (L. Mahadevan and J.B. Keller, Proc. Roy. Soc.(A) to appear.). This analogy is used to solve the nonlinear free-boundary problem for the frequency of coiling and the coil radius. The results are compared with experimental results that go back to the the work of G.I. Taylor (1969).

  6. Coil system for plasmoid thruster

    NASA Technical Reports Server (NTRS)

    Eskridge, Richard H. (Inventor); Lee, Michael H. (Inventor); Martin, Adam K. (Inventor); Fimognari, Peter J. (Inventor)

    2010-01-01

    A coil system for a plasmoid thruster includes a bias coil, a drive coil and field coils. The bias and drive coils are interleaved with one another as they are helically wound about a conical region. A first field coil defines a first passage at one end of the conical region, and is connected in series with the bias coil. A second field coil defines a second passage at an opposing end of the conical region, and is connected in series with the bias coil.

  7. Coiled bodies without coilin.

    PubMed Central

    Bauer, D W; Gall, J G

    1997-01-01

    Nuclei assembled in vitro in Xenopus egg extract contain coiled bodies that have components from three different RNA processing pathways: pre-mRNA splicing, pre-rRNA processing, and histone pre-mRNA 3'-end formation. In addition, they contain SPH-1, the Xenopus homologue of p80-coilin, a protein characteristic of coiled bodies. To determine whether coilin is an essential structural component of the coiled body, we removed it from the egg extract by immunoprecipitation. We showed that nuclei with bodies morphologically identical to coiled bodies (at the light microscope level) formed in such coilin-depleted extract. As expected, these bodies did not stain with antibodies against coilin. Moreover, they failed to stain with an antibody against the Sm proteins, although Sm proteins associated with snRNAs were still present in the extract. Staining of the coilin- and Sm-depleted coiled bodies was normal with antibodies against two nucleolar proteins, fibrillarin and nucleolin. Similar results were observed when Sm proteins were depleted from egg extract: staining of the coiled bodies with antibodies against the Sm proteins and coilin was markedly reduced but bright nucleolin and fibrillarin staining remained. These immunodepletion experiments demonstrate an interdependence between coilin and Sm snRNPs and suggest that neither is essential for assembly of nucleolar components in coiled bodies. We propose that coiled bodies are structurally heterogeneous organelles in which the components of the three RNA processing pathways may occur in separate compartments. Images PMID:9017596

  8. The use of coiled tubing during matrix acidizing of carbonate reservoirs

    SciTech Connect

    Thomas, R.L.; Milne, A.

    1995-10-01

    A laboratory and field study directed at improved well performance of horizontal wells is discussed. During the study, several wells were matrix acidized using bullhead and coiled tubing placement techniques. The study performed in carbonate reservoirs indicates acid placed with coiled tubing diverted with foam provides excellent zone coverage and damage removal. Conventional bullhead techniques do not result in effective damage removal. The study emphasizes the evaluation of the treatment results and the development of improved acidizing techniques. Laboratory simulations of matrix acidizing indicate proper placement techniques are essential. This observation is supported by field data in oil wells completed in carbonate reservoirs. The key to successful damage removal is (1) the placement of acid via coiled tubing and (2) proper diversion. Production logging and well performance data support this claim. The proposed treatment is applicable in both horizontal and vertical wells completed in carbonate reservoirs.

  9. Corrosion effects of hydrogen sulfide on coiled tubing and carbon steel in hydrochloric acid

    SciTech Connect

    1997-09-01

    Coiled tubing is commonly used in oilwell drilling and stimulation. It has been reported to be less susceptible to acid attack than carbon steel in acidizing. Corrosion problems are frequently reported from field activities and include corrosion/erosion, galvanic attack, brine/oxygen/acid attack, and HCl/H{sub 2}S attack. In this study, coiled tubing was exposed to inhibited HCl acid in the presence and absence of H{sub 2}S. Four HCl inhibitors and one H{sub 2}S inhibitor were evaluated, and the corrosion rates of coiled tubing, carbon steel (J-55), and carburized steel were compared. Tests were conducted at atmospheric pressure for temperatures less than and equal to 200 F. At temperatures greater than 200 F; tests were conducted at 4,000 psi.

  10. Commercial applications for COIL

    NASA Astrophysics Data System (ADS)

    Solomon, Wayne C.; Carroll, David L.; King, D. M.; Fockler, L. A.; Stromberg, D. S.; Sexauer, M.; Milmoe, A.; Sentman, Lee H.

    2000-01-01

    The chemical oxygen-iodine laser (COIL) is a high power, fiber deliverable tool, which can be used for a number of different industrial applications. COIL is of particular interest because of its short fiber deliverable wavelength, high scaleable continuous wave power, and excellent material interaction properties. In past research the University of Illinois at Urbana-Champaign identified and decommissioning and decontamination (DD) of nuclear facilities as a primary focus for COIL technology. DD will be a major challenge in the coming decades. The use of a robotically driven fiber delivered cutting/ablation tool in contaminated areas promises to lower risks to workers for the DD mission. Further, the high cutting speed of COIL will significantly reduce the time required to cut contaminated equipment, reducing costs. The high power of COIL will permit the dismantling of thick stacks of piping and equipment as well as reactor vessels. COIL is very promising for the removal of material from contaminated surfaces, perhaps to depths thicker than an inch. Laser cutting and ablation minimizes dust and fumes, which reduces the required number of high efficiency particulate accumulator filters, thus reducing costly waste disposal. Other potential industrial applications for COIL are shipbuilding, automotive manufacturing, heavy machinery manufacturing, tasks requiring underwater cutting or welding, and there appear to be very promising applications for high powers lasers in the oil industry.

  11. Coil spring venting arrangement

    DOEpatents

    McCugh, R.M.

    1975-10-21

    A simple venting device for trapped gas pockets in hydraulic systems is inserted through a small access passages, operated remotely, and removed completely. The device comprises a small diameter, closely wound coil spring which is pushed through a guide temporarily inserted in the access passage. The guide has a central passageway which directs the coil spring radially upward into the pocket, so that, with the guide properly positioned for depth and properly oriented, the coil spring can be pushed up into the top of the pocket to vent it. By positioning a seal around the free end of the guide, the spring and guide are removed and the passage is sealed.

  12. ELECTRICAL COIL STRUCTURE

    DOEpatents

    Baker, W.R.; Hartwig, A.

    1962-09-25

    A compactly wound electrical coil is designed for carrying intense pulsed currents such as are characteristic of controlled thermonuclear reaction devices. A flat strip of conductor is tightly wound in a spiral with a matching flat strip of insulator. To provide for a high fluid coolant flow through the coil with minimum pumping pressure, a surface of the conductor is scored with parallel transverse grooves which form short longitudinal coolant pasaages when the conductor is wound in the spiral configuration. Owing to this construction, the coil is extremely resistant to thermal and magnetic shock from sudden high currents. (AEC)

  13. Correction coil cable

    DOEpatents

    Wang, S.T.

    1994-11-01

    A wire cable assembly adapted for the winding of electrical coils is taught. A primary intended use is for use in particle tube assemblies for the Superconducting Super Collider. The correction coil cables have wires collected in wire array with a center rib sandwiched therebetween to form a core assembly. The core assembly is surrounded by an assembly housing having an inner spiral wrap and a counter wound outer spiral wrap. An alternate embodiment of the invention is rolled into a keystoned shape to improve radial alignment of the correction coil cable on a particle tube in a particle tube assembly. 7 figs.

  14. Coil Knotting during Endovascular Coil Embolization for Ruptured MCA Aneurysm

    PubMed Central

    Kwon, S.C.; Lyo, I.U.; Shin, S.H.; Park, J.B.; Kim, Y.

    2008-01-01

    Summary Complications during coil embolization of cerebral aneurysms include thromboembolic events, hemorrhagic complications related to procedural aneurysmal rupture and parent vessel perforation, and coil-related complications. The present report describes a rare coil-related complication involving spontaneous coil knotting. PMID:20557732

  15. A periodic table of coiled-coil protein structures.

    PubMed

    Moutevelis, Efrosini; Woolfson, Derek N

    2009-01-23

    Coiled coils are protein structure domains with two or more alpha-helices packed together via interlacing of side chains known as knob-into-hole packing. We analysed and classified a large set of coiled-coil structures using a combination of automated and manual methods. This led to a systematic classification that we termed a "periodic table of coiled coils," which we have made available at http://coiledcoils.chm.bris.ac.uk/ccplus/search/periodic_table. In this table, coiled-coil assemblies are arranged in columns with increasing numbers of alpha-helices and in rows of increased complexity. The table provides a framework for understanding possibilities in and limits on coiled-coil structures and a basis for future prediction, engineering and design studies.

  16. Mitochondrial Proteins Containing Coiled-Coil-Helix-Coiled-Coil-Helix (CHCH) Domains in Health and Disease.

    PubMed

    Modjtahedi, Nazanine; Tokatlidis, Kostas; Dessen, Philippe; Kroemer, Guido

    2016-03-01

    Members of the coiled-coil-helix-coiled-coil-helix (CHCH) domain-containing protein family that carry (CX9C) type motifs are imported into the mitochondrion with the help of the disulfide relay-dependent MIA import pathway. These evolutionarily conserved proteins are emerging as new cellular factors that control mitochondrial respiration, redox regulation, lipid homeostasis, and membrane ultrastructure and dynamics. We discuss recent insights on the activity of known (CX9C) motif-carrying proteins in mammals and review current data implicating the Mia40/CHCHD4 import machinery in the regulation of their mitochondrial import. Recent findings and the identification of disease-associated mutations in specific (CX9C) motif-carrying proteins have highlighted members of this family of proteins as potential therapeutic targets in a variety of human disorders.

  17. Borehole induction coil transmitter

    DOEpatents

    Holladay, Gale; Wilt, Michael J.

    2002-01-01

    A borehole induction coil transmitter which is a part of a cross-borehole electromagnetic field system that is used for underground imaging applications. The transmitter consists of four major parts: 1) a wound ferrite or mu-metal core, 2) an array of tuning capacitors, 3) a current driver circuit board, and 4) a flux monitor. The core is wound with several hundred turns of wire and connected in series with the capacitor array, to produce a tuned coil. This tuned coil uses internal circuitry to generate sinusoidal signals that are transmitted through the earth to a receiver coil in another borehole. The transmitter can operate at frequencies from 1-200 kHz and supplies sufficient power to permit the field system to operate in boreholes separated by up to 400 meters.

  18. Enhancing Induction Coil Reliability

    NASA Astrophysics Data System (ADS)

    Kreter, K.; Goldstein, R.; Yakey, C.; Nemkov, V.

    2014-12-01

    In induction hardening, thermal fatigue is one of the main copper failure modes of induction heat treating coils. There have been papers published that describe this failure mode and others that describe some good design practices. The variables previously identified as the sources of thermal fatigue include radiation from the part surface, frequency, current, concentrator losses, water pressure and coil wall thickness. However, there is very little quantitative data on the factors that influence thermal fatigue in induction coils is available in the public domain. By using finite element analysis software this study analyzes the effect of common design variables of inductor cooling, and quantifies the relative importance of these variables. A comprehensive case study for a single shot induction coil with Fluxtrol A concentrator applied is used for the analysis.

  19. Linear Rogowski coil

    NASA Astrophysics Data System (ADS)

    Nassisi, V.; Delle Side, D.

    2017-02-01

    Nowadays, the employment and development of fast current pulses require sophisticated systems to perform measurements. Rogowski coils are used to diagnose cylindrical shaped beams; therefore, they are designed and built with a toroidal structure. Recently, to perform experiments of radiofrequency biophysical stresses, flat transmission lines have been developed. Therefore, in this work we developed a linear Rogowski coil to detect current pulses inside flat conductors. The system is first approached by means of transmission line theory. We found that, if the pulse width to be diagnosed is comparable with the propagation time of the signal in the detector, it is necessary to impose a uniform current as input pulse, or to use short coils. We further analysed the effect of the resistance of the coil and the influence of its magnetic properties. As a result, the device we developed is able to record pulses lasting for some hundreds of nanoseconds, depending on the inductance, load impedance, and resistance of the coil. Furthermore, its response is characterized by a sub-nanosecond rise time (˜100 ps). The attenuation coefficient depends mainly on the turn number of the coil, while the fidelity of the response depends both on the magnetic core characteristics and on the current distribution along the plane conductors.

  20. Linear Rogowski coil.

    PubMed

    Nassisi, V; Delle Side, D

    2017-02-01

    Nowadays, the employment and development of fast current pulses require sophisticated systems to perform measurements. Rogowski coils are used to diagnose cylindrical shaped beams; therefore, they are designed and built with a toroidal structure. Recently, to perform experiments of radiofrequency biophysical stresses, flat transmission lines have been developed. Therefore, in this work we developed a linear Rogowski coil to detect current pulses inside flat conductors. The system is first approached by means of transmission line theory. We found that, if the pulse width to be diagnosed is comparable with the propagation time of the signal in the detector, it is necessary to impose a uniform current as input pulse, or to use short coils. We further analysed the effect of the resistance of the coil and the influence of its magnetic properties. As a result, the device we developed is able to record pulses lasting for some hundreds of nanoseconds, depending on the inductance, load impedance, and resistance of the coil. Furthermore, its response is characterized by a sub-nanosecond rise time (∼100 ps). The attenuation coefficient depends mainly on the turn number of the coil, while the fidelity of the response depends both on the magnetic core characteristics and on the current distribution along the plane conductors.

  1. NCSX Toroidal Field Coil Design

    SciTech Connect

    Kalish, M.; Rushinski, J.; Myatt, L.; Brooks, A.; Dahlgren, F.; Chrzanowski, J.; Reiersen, W.; Freudenberg, K.

    2005-10-07

    The National Compact Stellarator Experiment (NCSX) is an experimental device whose design and construction is underway at the Department of Energy's Princeton Plasma Physics Laboratory (PPPL). The primary coil systems for the NCSX device consist of the twisted plasma-shaping Modular Coils, the Poloidal Field Coils, and the Toroidal Field (TF) Coils. The TF Coils are D-shaped coils wound from hollow copper conductor, and vacuum impregnated with a glass-epoxy resin system. There are 18 identical, equally spaced TF coils providing 1/R field at the plasma. They operate within a cryostat, and are cooled by LN2, nominally, to 80K. Wedge shaped castings are assembled to the inboard face of these coils, so that inward radial loads are reacted via the nesting of each of the coils against their adjacent partners. This paper outlines the TF Coil design methodology, reviews the analysis results, and summarizes how the design and analysis support the design requirements.

  2. Ultrastructural localization of acid phosphatase in arbusculate coils of mycorrhizal Phoenix canariensis roots.

    PubMed

    Dreyer, Beatriz; Pérez-Gilabert, Manuela; Olmos, Enrique; Honrubia, Mario; Morte, Asunción

    2008-04-01

    Acid phosphatase (ACP) activity has been detected in roots of mycorrhizal and non-mycorrhizal Phoenix canariensis. This enzyme was ultrastructurally localized in arbusculate coils for the first time. This localization was carried out using a cerium-based method, which minimizes non-specific precipitation. The ACP was localized in inter- and intracellular hyphae, in the fungal cytoplasm as well as at the interface and the fungal cell wall and the periarbuscular membrane limiting it. The novel localization of an ACP in the arbuscular mycorrhizal (AM) interface of arbusculate coils suggests that this enzyme may be involved in the phosphorus efflux from the mycorrhizal fungus to the host. The results presented in this article indicate that the role played by ACP in AM symbiosis may be more important than was previously thought and that arbusculate coils are highly relevant when considering nutrient transfer through AM symbiosis.

  3. Coiled coils and SAH domains in cytoskeletal molecular motors.

    PubMed

    Peckham, Michelle

    2011-10-01

    Cytoskeletal motors include myosins, kinesins and dyneins. Myosins move along tracks of actin filaments, whereas kinesins and dyneins move along microtubules. Many of these motors are involved in trafficking cargo in cells. However, myosins are mostly monomeric, whereas kinesins are mostly dimeric, owing to the presence of a coiled coil. Some myosins (myosins 6, 7 and 10) contain an SAH (single α-helical) domain, which was originally thought to be a coiled coil. These myosins are now known to be monomers, not dimers. The differences between SAH domains and coiled coils are described and the potential roles of SAH domains in molecular motors are discussed.

  4. Aneurysm permeability following coil embolization: packing density and coil distribution

    PubMed Central

    Chueh, Ju-Yu; Vedantham, Srinivasan; Wakhloo, Ajay K; Carniato, Sarena L; Puri, Ajit S; Bzura, Conrad; Coffin, Spencer; Bogdanov, Alexei A; Gounis, Matthew J

    2015-01-01

    Background Rates of durable aneurysm occlusion following coil embolization vary widely, and a better understanding of coil mass mechanics is desired. The goal of this study is to evaluate the impact of packing density and coil uniformity on aneurysm permeability. Methods Aneurysm models were coiled using either Guglielmi detachable coils or Target coils. The permeability was assessed by taking the ratio of microspheres passing through the coil mass to those in the working fluid. Aneurysms containing coil masses were sectioned for image analysis to determine surface area fraction and coil uniformity. Results All aneurysms were coiled to a packing density of at least 27%. Packing density, surface area fraction of the dome and neck, and uniformity of the dome were significantly correlated (p<0.05). Hence, multivariate principal components-based partial least squares regression models were used to predict permeability. Similar loading vectors were obtained for packing and uniformity measures. Coil mass permeability was modeled better with the inclusion of packing and uniformity measures of the dome (r2=0.73) than with packing density alone (r2=0.45). The analysis indicates the importance of including a uniformity measure for coil distribution in the dome along with packing measures. Conclusions A densely packed aneurysm with a high degree of coil mass uniformity will reduce permeability. PMID:25031179

  5. Correction coil cable

    DOEpatents

    Wang, Sou-Tien

    1994-11-01

    A wire cable assembly (10, 310) adapted for the winding of electrical coils is taught. A primary intended use is for use in particle tube assemblies (532) for the superconducting super collider. The correction coil cables (10, 310) have wires (14, 314) collected in wire arrays (12, 312) with a center rib (16, 316) sandwiched therebetween to form a core assembly (18, 318 ). The core assembly (18, 318) is surrounded by an assembly housing (20, 320) having an inner spiral wrap (22, 322) and a counter wound outer spiral wrap (24, 324). An alternate embodiment (410) of the invention is rolled into a keystoned shape to improve radial alignment of the correction coil cable (410) on a particle tube (733) in a particle tube assembly (732).

  6. TESLA Coil Research

    DTIC Science & Technology

    1992-05-01

    Sloan’s work was actually predated by the earlier work of Nikola Tesla . Sloan mistakenly identified " Tesla Coils" as lumped tuned resonators. The...Lefvw WsnJ L REPORT o]i 3. REPRT TYPE AND OATES COVEIRD May 1992 Special/Aug 1992 - May 1992 Z TITLE AND 5U§nUT S. FUNDING NUMIHRS Tesla Coil Research...STATEMENT 1211. ’ISTRIUUTION COOD Approved for public release; dis~ribution is unlimited 13. ABSTRACT (Masrmum 200 worw) High repetition rate Tesla

  7. Meiosis specific coiled-coil proteins in Shizosaccharomyces pombe.

    PubMed

    Ohtaka, Ayami; Saito, Takamune T; Okuzaki, Daisuke; Nojima, Hiroshi

    2007-05-18

    Many meiosis-specific proteins in Schizosaccharomyces pombe contain coiled-coil motifs which play essential roles for meiotic progression. For example, the coiled-coil motifs present in Meu13 and Mcp7 are required for their function as a putative recombinase cofactor complex during meiotic recombination. Mcp6/Hrs1 and Mcp5/Num1 control horsetail chromosome movement by astral microtubule organization and anchoring dynein respectively. Dhc1 and Ssm4 are also required for horsetail chromosome movement. It is clear from these examples that the coiled-coil motif in these proteins plays an important role during the progression of cells through meiosis. However, there are still many unanswered questions on how these proteins operate. In this paper, we briefly review recent studies on the meiotic coiled-coil proteins in Sz. pombe.

  8. Meiosis specific coiled-coil proteins in Shizosaccharomyces pombe

    PubMed Central

    Ohtaka, Ayami; Saito, Takamune T; Okuzaki, Daisuke; Nojima, Hiroshi

    2007-01-01

    Many meiosis-specific proteins in Schizosaccharomyces pombe contain coiled-coil motifs which play essential roles for meiotic progression. For example, the coiled-coil motifs present in Meu13 and Mcp7 are required for their function as a putative recombinase cofactor complex during meiotic recombination. Mcp6/Hrs1 and Mcp5/Num1 control horsetail chromosome movement by astral microtubule organization and anchoring dynein respectively. Dhc1 and Ssm4 are also required for horsetail chromosome movement. It is clear from these examples that the coiled-coil motif in these proteins plays an important role during the progression of cells through meiosis. However, there are still many unanswered questions on how these proteins operate. In this paper, we briefly review recent studies on the meiotic coiled-coil proteins in Sz. pombe. PMID:17509158

  9. Transport Vesicle Tethering at the Trans Golgi Network: Coiled Coil Proteins in Action

    PubMed Central

    Cheung, Pak-yan P.; Pfeffer, Suzanne R.

    2016-01-01

    The Golgi complex is decorated with so-called Golgin proteins that share a common feature: a large proportion of their amino acid sequences are predicted to form coiled-coil structures. The possible presence of extensive coiled coils implies that these proteins are highly elongated molecules that can extend a significant distance from the Golgi surface. This property would help them to capture or trap inbound transport vesicles and to tether Golgi mini-stacks together. This review will summarize our current understanding of coiled coil tethers that are needed for the receipt of transport vesicles at the trans Golgi network (TGN). How do long tethering proteins actually catch vesicles? Golgi-associated, coiled coil tethers contain numerous binding sites for small GTPases, SNARE proteins, and vesicle coat proteins. How are these interactions coordinated and are any or all of them important for the tethering process? Progress toward understanding these questions and remaining, unresolved mysteries will be discussed. PMID:27014693

  10. Computational analysis of residue contributions to coiled-coil topology.

    PubMed

    Ramos, Jorge; Lazaridis, Themis

    2011-11-01

    A variety of features are thought to contribute to the oligomeric and topological specificity of coiled coils. In previous work, we examined the determinants of oligomeric state. Here, we examine the energetic basis for the tendency of six coiled-coil peptides to align their α-helices in antiparallel orientation using molecular dynamics simulations with implicit solvation (EEF1.1). We also examine the effect of mutations known to disrupt the topology of these peptides. In agreement with experiment, ARG or LYS at a or d positions were found to stabilize the antiparallel configuration. The modeling suggests that this is not due to a-a' or d-d' repulsions but due to interactions with e' and g' residues. TRP at core positions also favors the antiparallel configuration. Residues that disfavor parallel dimers, such as ILE at d, are better tolerated in, and thus favor the antiparallel configuration. Salt bridge networks were found to be more stabilizing in the antiparallel configuration for geometric reasons: antiparallel helices point amino acid side chains in opposite directions. However, the structure with the largest number of salt bridges was not always the most stable, due to desolvation and configurational entropy contributions. In tetramers, the extent of stabilization of the antiparallel topology by core residues is influenced by the e' residue on a neighboring helix. Residues at b and c positions in some cases also contribute to stabilization of antiparallel tetramers. This work provides useful rules toward the goal of designing coiled coils with a well-defined and predictable three-dimensional structure.

  11. An orientable search coil

    NASA Astrophysics Data System (ADS)

    Holt, P. J.; Poblocki, M.

    2017-01-01

    We provide a design for a low cost orientable search coil that can be used to investigate the variation of magnetic flux with angle. This experiment is one of the required practical activities in the current A level physics specification for the AQA examination board in the UK. We demonstrate its performance and suggest other suitable investigations that can be undertaken.

  12. Imprinted Clay Coil Vessels

    ERIC Educational Resources Information Center

    Lohr, Tresa Rae

    2006-01-01

    The author teaches clay vessel construction in the fifth grade, and it is amazing what can be accomplished in one forty-five minute period when the expectations are clarified in the initial lesson. The author introduces clay coil vessels with a discussion of the sources of clay and how clay relates to fifth-grade science curriculum concepts such…

  13. Improved Coil for Hydrogen Dissociators

    NASA Technical Reports Server (NTRS)

    Vessot, R.

    1984-01-01

    Flat coil has rigid printed circuit substrate. New coil structure minimizes RF electric field near glass walls of plasma vessel; therefore reduces direct electron bombardment of glass. Design lends itself well to high production and standardized dimensions.

  14. Pulse Test of Coil Insulation

    NASA Technical Reports Server (NTRS)

    Kroy, Ralph E.

    1987-01-01

    Waveform of back-electromotive force reveals defects. Simple pulse test reveals defects in inductor coils. Devised for use on servovalve solenoid coils on Space Shuttle, test also applicable to transformer windings, chokes, relays, and the like.

  15. Coiled tubing operations and services

    SciTech Connect

    Jaworsky, A.S. II )

    1991-11-01

    Coiled tubing offers many advantages over conventional jointed tubing used for drilling in oil fields, including time savings, pumping flexibility, fluid placement, reduced formation damage and safety. The article gives an overview of coiled tubing history and development. Operating concepts are explained, along with descriptions of the major equipment and components associated with coiled tubing use in the oil field today.

  16. Wet Winding Improves Coil Encapsulation

    NASA Technical Reports Server (NTRS)

    Hill, A. J.

    1987-01-01

    Wet-winding process encapsulates electrical coils more uniformily than conventional processes. Process requires no vacuum pump and adapts easily to existing winding machines. Encapsulant applied to each layer of wire as soon as added to coil. Wet-winding process eliminates voids, giving more uniformly encapsulated coil.

  17. Modular coils: a promising toroidal-reactor-coil system

    SciTech Connect

    Chu, T.K.; Furth, H.P.; Johnson, J.L.; Ludescher, C.; Weimer, K.E.

    1981-04-01

    The concept of modular coils originated from a need to find reactor-relevant stellarator windings, but its usefulness can be extended to provide an externally applied, additional rotational transform in tokamaks. Considerations of (1) basic principles of modular coils, (2) types of coils, (3) types of configurations (general, helically symmetric, helically asymmetric, with magnetic well, with magnetic hill), (4) types of rotational transform profile, and (5) structure and origin of ripples are given. These results show that modular coils can offer a wide range of vacuum magnetic field configurations, some of which cannot be obtained with the classical stellarator or torsatron coil configuration.

  18. Electrospun Buckling Coils

    NASA Astrophysics Data System (ADS)

    Xin, Yu; Reneker, Darrell

    2009-03-01

    Electrospinning offers a useful way to produce fibers with micron and nanometer scale diameter. The present work deals with the buckling phenomenon characteristic of a jet impinging upon the surface of collector. A viscous jet may have either tensile or compressive forces along its axis. The periodic buckling that is often observed is attributed to the occurrence of compressive forces as the jet decelerates at the collector. With the increase of axial compressive stresses along the jet, a jet with circular cross sections first buckles by formation of sharp folds, and then by formation of coils. The resulting buckling patterns include zigzag patterns and coils that which can be controlled by changing parameters, such as density, viscosity, conductivity, voltage, polymer concentration, distance and volumetric flow rate. Uniformly buckled polymer fibers can be made at a rate of one turn per microsecond. An experimental apparatus was built to continuously collect buckling coils of nylon 6, from a water surface, into a multilayer sheet. These small ``springs'' and sheets will be tested for mechanical properties needed in biomedical applications.

  19. Stability of 100 homo and heterotypic coiled-coil a-a' pairs for ten amino acids (A, L, I, V, N, K, S, T, E, and R).

    PubMed

    Acharya, Asha; Rishi, Vikas; Vinson, Charles

    2006-09-26

    We present the thermal stability monitored by circular dichroism (CD) spectroscopy at 222 nm of 100 heterodimers that contain all possible coiled-coil a-a' pairs for 10 amino acids (I, V, L, N, A, K S, T, E, and R). This includes the stability of 36 heterodimers for 6 amino acids (I, V, L, N, A, and K) previously described and 64 new heterodimers including the 4 amino acids (S, T, E, and R). We have calculated a double mutant alanine thermodynamic cycle to determine a-a' pair coupling energies to evaluate which a-a' pairs encourage specific dimerization partners. The four new homotypic a-a' pairs (T-T, S-S, R-R, E-E) are repulsive relative to A-A and have destabilizing coupling energies. Among the 90 heterotypic a-a' pairs, the stabilizing coupling energies contain lysine or arginine paired with either an aliphatic or a polar amino acid. The range in coupling energies for each amino acid reveals its potential to regulate dimerization specificity. The a-a' pairs containing isoleucine and asparagine have the greatest range in coupling energies and thus contribute dramatically to dimerization specificity, which is to encourage homodimerization. In contrast, the a-a' pairs containing charged amino acids (K, R, and E) show the least range in coupling energies and promiscuously encourage heterodimerization.

  20. Functional investigation of the plant-specific long coiled-coil proteins PAMP-INDUCED COILED-COIL (PICC) and PICC-LIKE (PICL) in Arabidopsis thaliana.

    PubMed

    Venkatakrishnan, Sowmya; Mackey, David; Meier, Iris

    2013-01-01

    We have identified and characterized two Arabidopsis long coiled-coil proteins PAMP-INDUCED COILED-COIL (PICC) and PICC-LIKE (PICL). PICC (147 kDa) and PICL (87 kDa) are paralogs that consist predominantly of a long coiled-coil domain (expanded in PICC), with a predicted transmembrane domain at the immediate C-terminus. Orthologs of PICC and PICL were found exclusively in vascular plants. PICC and PICL GFP fusion proteins are anchored to the cytoplasmic surface of the endoplasmic reticulum (ER) membrane by a C-terminal transmembrane domain and a short tail domain, via a tail-anchoring mechanism. T-DNA-insertion mutants of PICC and PICL as well as the double mutant show an increased sensitivity to the plant abiotic stress hormone abscisic acid (ABA) in a post-germination growth response. PICC, but not PICL gene expression is induced by the bacterial pathogen-associated molecular pattern (PAMP) flg22. T-DNA insertion alleles of PICC, but not PICL, show increased susceptibility to the non-virulent strain P. syringae pv. tomato DC3000 hrcC, but not to the virulent strain P. syringae pv. tomato DC3000. This suggests that PICC mutants are compromised in PAMP-triggered immunity (PTI). The data presented here provide first evidence for the involvement of a plant long coiled-coil protein in a plant defense response.

  1. Functional Investigation of the Plant-Specific Long Coiled-Coil Proteins PAMP-INDUCED COILED-COIL (PICC) and PICC-LIKE (PICL) in Arabidopsis thaliana

    PubMed Central

    Venkatakrishnan, Sowmya; Mackey, David; Meier, Iris

    2013-01-01

    We have identified and characterized two Arabidopsis long coiled-coil proteins PAMP-INDUCED COILED-COIL (PICC) and PICC-LIKE (PICL). PICC (147 kDa) and PICL (87 kDa) are paralogs that consist predominantly of a long coiled-coil domain (expanded in PICC), with a predicted transmembrane domain at the immediate C-terminus. Orthologs of PICC and PICL were found exclusively in vascular plants. PICC and PICL GFP fusion proteins are anchored to the cytoplasmic surface of the endoplasmic reticulum (ER) membrane by a C-terminal transmembrane domain and a short tail domain, via a tail-anchoring mechanism. T-DNA-insertion mutants of PICC and PICL as well as the double mutant show an increased sensitivity to the plant abiotic stress hormone abscisic acid (ABA) in a post-germination growth response. PICC, but not PICL gene expression is induced by the bacterial pathogen-associated molecular pattern (PAMP) flg22. T-DNA insertion alleles of PICC, but not PICL, show increased susceptibility to the non-virulent strain P. syringae pv. tomato DC3000 hrcC, but not to the virulent strain P. syringae pv. tomato DC3000. This suggests that PICC mutants are compromised in PAMP-triggered immunity (PTI). The data presented here provide first evidence for the involvement of a plant long coiled-coil protein in a plant defense response. PMID:23451199

  2. Triple Halo Coil: Development and Comparison with Other TMS Coils

    NASA Astrophysics Data System (ADS)

    Rastogi, Priyam; Hadimani, Ravi; Jiles, David

    Transcranial Magnetic Stimulation (TMS) is a non-invasive stimulation technique that can be used for the treatment of various neurological disorders such as Parkinson's Disease, PTSD, TBI and anxiety by regulating synaptic activity. TMS is FDA approved for the treatment of major depressive disorder. There is a critical need to develop deep TMS coils that can stimulate deeper regions of the brain without excessively stimulating the cortex in order to provide an alternative to surgical methods. We have developed a novel multi-coil configuration called ``Triple Halo Coil'' (THC) that can stimulate deep brain regions. Investigation of induced electric and magnetic field in these regions have been achieved by computer modelling. Comparison of the results due to THC configuration have been conducted with other TMS coils such as ``Halo Coil'', circular coil and ``Figure of Eight'' coil. There was an improvement of more than 15 times in the strength of magnetic field, induced by THC configuration at 10 cm below the vertex of the head when compared with the ``Figure of Eight'' coil alone. Carver Charitable Trust.

  3. pH sensitive coiled coils: a strategy for enhanced liposomal drug delivery

    NASA Astrophysics Data System (ADS)

    Reja, Rahi M.; Khan, Mohsina; Singh, Sumeet K.; Misra, Rajkumar; Shiras, Anjali; Gopi, Hosahudya N.

    2016-02-01

    Stimuli responsive controlled release from liposome based vesicles is a promising strategy for the site specific delivery of drugs. Herein, we report the design of pH sensitive coiled coils and their incorporation into the liposome as triggers for the controlled release of encapsulated drugs. The designed coiled coil peptides with the incorporation of environment sensitive fluorescent amino acids were found to be stable at physiological pH and unstructured while changing the pH of the environment to either acidic or basic. This pH dependent conformational switch of the coiled-coil polypeptides was exploited as triggers for the enhanced release of the encapsulated drug molecules from liposomes. The SEM, DLS and TEM analysis revealed the uniform morphology of the peptide liposome hybrid vesicles. Further, the drug encapsulated liposome internalization experiments with cancer cells revealed the enhanced release and accumulation of drugs in the acidic lysosomal compartments in comparison with liposomes without coiled coils.Stimuli responsive controlled release from liposome based vesicles is a promising strategy for the site specific delivery of drugs. Herein, we report the design of pH sensitive coiled coils and their incorporation into the liposome as triggers for the controlled release of encapsulated drugs. The designed coiled coil peptides with the incorporation of environment sensitive fluorescent amino acids were found to be stable at physiological pH and unstructured while changing the pH of the environment to either acidic or basic. This pH dependent conformational switch of the coiled-coil polypeptides was exploited as triggers for the enhanced release of the encapsulated drug molecules from liposomes. The SEM, DLS and TEM analysis revealed the uniform morphology of the peptide liposome hybrid vesicles. Further, the drug encapsulated liposome internalization experiments with cancer cells revealed the enhanced release and accumulation of drugs in the acidic

  4. Collapse pressure of coiled tubing

    SciTech Connect

    Yang, Y.S.

    1996-09-01

    The collapse pressure is a measure of an external force required to collapse a tube in the absence of internal pressure. It is defined as the minimum pressure required to yield the tube in the absence of internal pressure. Coiled tubing is sometimes used in high-pressure wells. If the external pressure becomes too high, the coiled tubing will collapse. This could not only lead to serious well-control problems, but may result in extensive fishing operations. A reliable safety criterion of collapse pressure for the coiled tubing is needed by the coiled tubing operators. Theoretical models of collapse pressure are well developed for perfectly round coiled tubing but not for oval coiled tubing. Coiled tubing is initially manufactured with nearly perfect roundness, sometimes having a small ovality (typically {le} 0.5%). Perfectly round CT becomes oval owing to the plastic mechanical deformation of the coiled tubing as it spooled on and off the reel and over the gooseneck. As the cycling continues, the ovality usually increases. This ovality significantly decreases the collapse failure pressure as compared to perfectly round tubing. In this paper, an analytical model of collapse pressure for oval tubing under axial tension or compression is developed based on elastic instability theory and the von Mises criterion. The theoretical model shows satisfactory agreement with experimental data.

  5. COIL technology development at Boeing

    NASA Astrophysics Data System (ADS)

    Hurlock, Steve C.

    2002-05-01

    The historical COIL contributions at the McDonnell Douglas Research Laboratory, the Rocketdyne Division of Rockwell International and Boeing's Laser and Electro-Optic Systems organization are briefly described. The latter organization now contains the capabilities of the two heritage organizations. Boeing's new high pressure sealed COIL is also described.

  6. Replaceable Sleeve Protects Welder Coil

    NASA Technical Reports Server (NTRS)

    Baker, W. L.; Simpson, C., E.

    1983-01-01

    New replaceable carbon insert for deflection coil in electron-beam welder promises to decrease maintenance costs. Inserts made from materials other than carbon (not yet tried) are less expensive, thus reducing costs even further. With carbon insert, deflection coils last longer and are easier to maintain.

  7. Magnet Coil Shorted Turn Detector

    SciTech Connect

    Dinkel, J.A.; Biggs, J.E.

    1994-03-01

    The Magnet Coil Shorted Turn Detector has been developed to facilitate the location of shorted turns in magnet coils. Finding these shorted turns is necessary to determine failure modes that are a necessary step in developing future production techniques. Up to this point, coils with shorted turns had the insulation burned off without the fault having been located. This disassembly process destroyed any chance of being able to find the fault. In order to maintain a flux balance in a coupled system such as a magnet coil, the current in a shorted turn must be opposed to the incident current. If the direction of the current in each conductor can be measured relative to the incident current, then the exact location of the short can be determined. In this device, an AC voltage is applied to the magnet under test. A small hand held B-dot pickup coil monitors the magnetic field produced by current in the individual magnet conductors. The relative phase of this pickup coil voltage is compared to a reference signal derived from the input current to detect a current reversal as the B-dot pickup coil is swept over the conductors of the coil under test. This technique however, is limited to only those conductors that are accessible to the hand held probe.

  8. Nuclear Magnetic Resonance Structures of GCN4p Are Largely Conserved When Ion Pairs Are Disrupted at Acidic pH but Show a Relaxation of the Coiled Coil Superhelix.

    PubMed

    Kaplan, Anne R; Brady, Megan R; Maciejewski, Mark W; Kammerer, Richard A; Alexandrescu, Andrei T

    2017-03-09

    To understand the roles ion pairs play in stabilizing coiled coils, we determined nuclear magnetic resonance structures of GCN4p at three pH values. At pH 6.6, all acidic residues are fully charged; at pH 4.4, they are half-charged, and at pH 1.5, they are protonated and uncharged. The α-helix monomer and coiled coil structures of GCN4p are largely conserved, except for a loosening of the coiled coil quaternary structure with a decrease in pH. Differences going from neutral to acidic pH include (i) an unwinding of the coiled coil superhelix caused by the loss of interchain ion pair contacts, (ii) a small increase in the separation of the monomers in the dimer, (iii) a loosening of the knobs-into-holes packing motifs, and (iv) an increased separation between oppositely charged residues that participate in ion pairs at neutral pH. Chemical shifts (HN, N, C', Cα, and Cβ) of GCN4p display a seven-residue periodicity that is consistent with α-helical structure and is invariant with pH. By contrast, periodicity in hydrogen exchange rates at neutral pH is lost at acidic pH as the exchange mechanism moves into the EX1 regime. On the basis of (1)H-(15)N nuclear Overhauser effect relaxation measurements, the α-helix monomers experience only small increases in picosecond to nanosecond backbone dynamics at acidic pH. By contrast, (13)C rotating frame T1 relaxation (T1ρ) data evince an increase in picosecond to nanosecond side-chain dynamics at lower pH, particularly for residues that stabilize the coiled coil dimerization interface through ion pairs. The results on the structure and dynamics of GCNp4 over a range of pH values help rationalize why a single structure at neutral pH poorly predicts the pH dependence of the unfolding stability of the coiled coil.

  9. The Coil Method in Contemporary Ceramics

    ERIC Educational Resources Information Center

    Nigrosh, Leon I.

    1976-01-01

    For centuries coil building has been the primary method of making pottery the world over. Many classrooms still reflect this preference for symmetrical coil building. Describes coil building and what forms can be made from it. (Author/RK)

  10. Helically Coiled Graphene Nanoribbons.

    PubMed

    Daigle, Maxime; Miao, Dandan; Lucotti, Andrea; Tommasini, Matteo; Morin, Jean-François

    2017-03-07

    Graphene is a zero-gap, semiconducting 2D material that exhibits outstanding charge-transport properties. One way to open a band gap and make graphene useful as a semiconducting material is to confine the electron delocalization in one dimension through the preparation of graphene nanoribbons (GNR). Although several methods have been reported so far, solution-phase, bottom-up synthesis is the most promising in terms of structural precision and large-scale production. Herein, we report the synthesis of a well-defined, helically coiled GNR from a polychlorinated poly(m-phenylene) through a regioselective photochemical cyclodehydrochlorination (CDHC) reaction. The structure of the helical GNR was confirmed by (1) H NMR, FT-IR, XPS, TEM, and Raman spectroscopy. This Riemann surface-like GNR has a band gap of 2.15 eV and is highly emissive in the visible region, both in solution and the solid state.

  11. Structural and biochemical characterizations of an intramolecular tandem coiled coil protein.

    PubMed

    Shin, Donghyuk; Kim, Gwanho; Kim, Gyuhee; Zheng, Xu; Kim, Yang-Gyun; Lee, Sangho

    2014-12-12

    Coiled coil has served as an excellent model system for studying protein folding and developing protein-based biomaterials. Most designed coiled coils function as oligomers, namely intermolecular coiled coils. However, less is known about structural and biochemical behavior of intramolecular coiled coils where coiled coil domains are covalently linked in one polypeptide. Here we prepare a protein which harbors three coiled coil domains with two short linkers, termed intramolecular tandem coiled coil (ITCC) and characterize its structural and biochemical behavior in solution. ITCC consists of three coiled coil domains whose sequences are derived from Coil-Ser and its domain swapped dimer. Modifications include positioning E (Glu) residue at "e" and K (Lys) at "g" positions throughout heptad repeats to enhance ionic interaction among its constituent coiled coil domains. Molecular modeling of ITCC suggests a compact triple helical bundle structure with the second and the third coiled coil domains forming a canonical coiled coil. ITCC exists as a mixture of monomeric and dimeric species in solution. Small-angle X-ray scattering reveals ellipsoidal molecular envelopes for both dimeric and monomeric ITCC in solution. The theoretically modeled structures of ITCC dock well into the envelopes of both species. Higher ionic strength shifts the equilibrium into monomer with apparently more compact structure while secondary structure remains unchanged. Taken together, our results suggest that our designed ITCC is predominantly monomeric structure through the enhanced ionic interactions, and its conformation is affected by the concentration of ionic species in the buffer.

  12. Coiled tubing - Operations and services

    SciTech Connect

    Gronseth, J.M. )

    1993-04-01

    Drilling with a continuous (rather than jointed) drill string is an old concept that is gaining new attention as a result of recent advances made in coiled tubing and drilling technology. The development of larger diameter, reliable, high-strength coiled tubing and smaller diameter, positive displacement motors, orienting tools, surveying systems and fixed cutting drill bits have given drilling with a continuous drill string a capability that was previously unattainable. Like its many other uses, (e.g., squeeze cementing, wellbore cleanouts, flow initiation, logging) the continuity of coiled tubing gives it several advantages over conventional drill strings. These include: drilling underbalanced safely, significantly reduced trip time, continuous circulation, smaller surface requirements. Coiled tubing drilling operations have smaller surface lease requirements than most conventional rigs due to the smaller footprint of the coiled tubing unit and associated equipment. Current coiled tubing drilling operations have the following limitations: conventional rig assistance is required for well preparation; conventional rigs must assist in running long protective and production casing strings or liners; hole sizes are smaller; working depth capabilities are shallower, coiled tubing life is less. This paper goes on to discuss the history of continuous drill strings and includes information on tubing units, circulating systems, drilling fluids, well control systems, downhole tools, orientation tools, and bottomhole assemblies. It then gives a cost comparison and an application of this type of drilling.

  13. Improved Sensing Coils for SQUIDs

    NASA Technical Reports Server (NTRS)

    Penanen, Konstantin; Hahn, Inseob; Eom, Byeong Ho

    2007-01-01

    An improvement in the design and fabrication of sensing coils of superconducting quantum interference device (SQUID) magnetometers has been proposed to increase sensitivity. It has been estimated that, in some cases, it would be possible to increase sensitivity by about half or to reduce measurement time correspondingly. The pertinent aspects of the problems of design and fabrication can be summarized as follows: In general, to increase the sensitivity of a SQUID magnetometer, it is necessary to maximize the magnetic flux enclosed by the sensing coil while minimizing the self-inductance of this coil. It is often beneficial to fabricate the coil from a thicker wire to reduce its self-inductance. Moreover, to optimize the design of the coil with respect to sensitivity, it may be necessary to shape the wire to other than a commonly available circular or square cross-section. On the other hand, it is not practical to use thicker superconducting wire for the entire superconducting circuit, especially if the design of a specific device requires a persistent-current loop enclosing a remotely placed SQUID sensor. It may be possible to bond a thicker sensing-coil wire to thinner superconducting wires leading to a SQUID sensor, but it could be difficult to ensure reliable superconducting connections, especially if the bonded wires are made of different materials. The main idea is to mold the sensing coil in place, to more nearly optimum cross sectional shape, instead of making the coil by winding standard pre-fabricated wire. For this purpose, a thin superconducting wire loop that is an essential part of the SQUID magnetometer would be encapsulated in a form that would serve as a mold. A low-melting-temperature superconducting metal (e.g., indium, tin, or a lead/tin alloy) would be melted into the form, which would be sized and shaped to impart the required cross section to the coil thus formed.

  14. Coiled tubing cuts horizontal screen repair cost

    SciTech Connect

    Crow, W.; Hill, P.; Johnston, R.

    1996-01-01

    This article presents a case history of the successful workover performed by a coiled tubing unit (CTU) on Mississippi Canyon (MC) Block 109 Well A-24 in the US Gulf of Mexico to clean out sand and install new concentric screen for sand control. Workover design and operational details discussed are: Workover design -- hole-cleaning hydraulics, CT and screen predictions and comparison considerations; Workover operations -- cleanout, running packer and screens, coiled tubing (CT) weights, acid treatment and nitrogen lift and flow back.

  15. Cross-linking reveals laminin coiled-coil architecture

    PubMed Central

    Armony, Gad; Jacob, Etai; Moran, Toot; Levin, Yishai; Mehlman, Tevie; Levy, Yaakov; Fass, Deborah

    2016-01-01

    Laminin, an ∼800-kDa heterotrimeric protein, is a major functional component of the extracellular matrix, contributing to tissue development and maintenance. The unique architecture of laminin is not currently amenable to determination at high resolution, as its flexible and narrow segments complicate both crystallization and single-particle reconstruction by electron microscopy. Therefore, we used cross-linking and MS, evaluated using computational methods, to address key questions regarding laminin quaternary structure. This approach was particularly well suited to the ∼750-Å coiled coil that mediates trimer assembly, and our results support revision of the subunit order typically presented in laminin schematics. Furthermore, information on the subunit register in the coiled coil and cross-links to downstream domains provide insights into the self-assembly required for interaction with other extracellular matrix and cell surface proteins. PMID:27815530

  16. Coiled tubing. operations and services

    SciTech Connect

    Hightower, C.M. )

    1992-11-01

    Coiled tubing is being used with increasing frequency in conventional or traditional production operations. Demand for coiled pipe in these types of applications is expected to experience rapid growth as standard 2 (3/8) and 2 (7/8)-in. OD tubing sizes and units equipped to run larger pipe become more readily available. This paper reports on a recent market survey which indicated that coiled tubing used for velocity strings and standard production tubing installations are two areas with the most potential for immediate and near-term expansion. Other applications include: well casing and liners, gravel packing, artificial lift, flowlines and pipelines.

  17. Laminated magnet field coil sheath

    DOEpatents

    Skaritka, John R.

    1987-12-01

    a method for manufacturing a magnet cable trim coil in a sheath assembly for use in a cryogenic particle accelerator. A precisely positioned pattern of trim coil turns is bonded to a flexible substrate sheath that is capable of withstanding cryogenic operating conditions. In the method of the invention the flexible sheath, with the trim coil pattern precisely positioned thereon, is accurately positioned at a precise location relative to a bore tube assembly of an accelerator and is then bonded to the bore tube with a tape suitable for cryogenic application. The resultant assembly can be readily handled and installed within an iron magnet yoke assembly of a suitable cryogenic particle accelerator.

  18. Laminated magnet field coil sheath

    DOEpatents

    Skaritka, J.R.

    1987-05-15

    A method for manufacturing a magnetic cable trim coil in a sheath assembly for use in a cryogenic particle accelerator. A precisely positioned pattern of trim coil turns is bonded to a flexible substrate sheath that is capable of withstanding cryogenic operating conditions. In the method of the invention the flexible substrate sheath, with the trim coil pattern precisely location relative to a bore tube assembly of an accelerator and is then bonded to the bore tube with a tape suitable for cryogenic application. The resultant assembly can be readily handled and installed within an iron magnet yoke assembly of a suitable cryogenic particle accelerator. 1 fig.

  19. ASTROMAG coil cooling study

    NASA Technical Reports Server (NTRS)

    Maytal, Ben-Zion; Vansciver, Steven W.

    1990-01-01

    ASTROMAG is a planned particle astrophysics magnetic facility. Basically it is a large magnetic spectrometer outside the Earth's atmosphere for an extended period of time in orbit on a space station. A definition team summarized its scientific objectives assumably related to fundamental questions of astrophysics, cosmology, and elementary particle physics. Since magnetic induction of about 7 Tesla is desired, it is planned to be a superconducting magnet cooled to liquid helium 2 temperatures. The general structure of ASTROMAG is based on: (1) two superconducting magnetic coils, (2) dewar of liquid helium 2 to provide cooling capability for the magnets; (3) instrumentation, matter-anti matter spectrometer (MAS) and cosmic ray isotope spectrometer (CRIS); and (4) interfaces to the shuttle and space station. Many configurations of the superconducting magnets and the dewar were proposed and evaluated, since those are the heart of the ASTROMAG. Baseline of the magnet configuration and cryostat as presented in the phase A study and the one kept in mind while doing the present study are presented. ASTROMAG's development schedule reflects the plan of launching to the space station in 1995.

  20. Antiparallel Four-Stranded Coiled Coil Specified by a 3-3-1 Hyrdrophobic Heptad Repeat

    SciTech Connect

    Deng,Y.; Liu, J.; Zheng, Q.; Eliezer, D.; Kallenbach, N.; Lu, M.

    2006-01-01

    Coiled-coil sequences in proteins commonly share a seven-amino acid repeat with nonpolar side chains at the first (a) and fourth (d) positions. We investigate here the role of a 3-3-1 hydrophobic repeat containing nonpolar amino acids at the a, d, and g positions in determining the structures of coiled coils using mutants of the GCN4 leucine zipper dimerization domain. When three charged residues at the g positions in the parental sequence are replaced by nonpolar alanine or valine side chains, stable four-helix structures result. The X-ray crystal structures of the tetramers reveal antiparallel, four-stranded coiled coils in which the a, d, and g side chains interlock in a combination of knobs-into-knobs and knobs-into-holes packing. Interfacial interactions in a coiled coil can therefore be prescribed by hydrophobic-polar patterns beyond the canonical 3-4 heptad repeat. The results suggest that the conserved, charged residues at the g positions in the GCN4 leucine zipper can impart a negative design element to disfavor thermodynamically more stable, antiparallel tetramers.

  1. Can Magnetic Coil Ease Tinnitus?

    MedlinePlus

    ... Go Back Sign up for VA Research Updates Technology Horizons Can magnetic coil ease tinnitus? VA trial ... help reduce the abnormal perception of sounds. The Food and Drug Administration approved the relatively painless treatment [ ...

  2. Adjustable Induction-Heating Coil

    NASA Technical Reports Server (NTRS)

    Ellis, Rod; Bartolotta, Paul

    1990-01-01

    Improved design for induction-heating work coil facilitates optimization of heating in different metal specimens. Three segments adjusted independently to obtain desired distribution of temperature. Reduces time needed to achieve required temperature profiles.

  3. Zero-angle helical coil

    NASA Technical Reports Server (NTRS)

    Troendle, J. A.

    1976-01-01

    Device is constructed of bimetallic stock material formed into segments of small diameters and fastened together by metal strips. Coil is useful in various types of actuators, such as temperature controls.

  4. Nylon screws make inexpensive coil forms

    NASA Technical Reports Server (NTRS)

    Aucoin, G.; Rosenthal, C.

    1978-01-01

    Standard nylon screws act as coil form copper wire laid down in spiral thread. Completed coil may be bonded to printed-circuit board. However, it is impossible to tune coil by adjusting spacing between windings, technique sometimes used with air-core coils.

  5. Dynamics of liquid rope coiling.

    PubMed

    Habibi, Mehdi; Maleki, Maniya; Golestanian, Ramin; Ribe, Neil M; Bonn, Daniel

    2006-12-01

    We present a combined experimental and numerical investigation of the coiling of a liquid "rope" falling on a solid surface, focusing on three little-explored aspects of the phenomenon: The time dependence of "inertio-gravitational" coiling, the systematic dependence of the radii of the coil and the rope on the experimental parameters, and the "secondary buckling" of the columnar structure generated by high-frequency coiling. Inertio-gravitational coiling is characterized by oscillations between states with different frequencies, and we present experimental observations of four distinct branches of such states in the frequency-fall height space. The transitions between coexisting states have no characteristic period, may take place with or without a change in the sense of rotation, and usually (but not always) occur via an intermediate "figure of eight" state. We present extensive laboratory measurements of the radii of the coil and of the rope within it, and show that they agree well with the predictions of a "slender-rope" numerical model. Finally, we use dimensional analysis to reveal a systematic variation of the critical column height for secondary buckling as a function of (dimensionless) flow rate and surface tension parameters.

  6. Equilibrium field coil concepts for INTOR

    SciTech Connect

    Strickler, D.J.; Peng, Y.K.M.; Brown, T.G.

    1981-08-01

    Methods are presented for reducing ampere-turn requirements in the EF coil system. It is shown that coil currents in an EF coil system external to the toroidal field coils can be substantially reduced by relaxing the triangularity of a D-shaped plasma. Further reductions are realized through a hybrid EF coil system using both internal and external coils. Equilibrium field coils for a poloidally asymmetric, single-null INTOR configuration are presented. It is shown that the shape of field lines in the plasma scrapeoff region and divertor channel improves as triangularity is reduced, but it does so at the possible expense of achievable stable beta values.

  7. Modulation of elasticity in functionally distinct domains of the tropomyosin coiled-coil.

    PubMed

    Lakkaraju, Sirish Kaushik; Hwang, Wonmuk

    2009-03-01

    Alpha-helical coiled-coils are common protein structural motifs. Whereas vast information is available regarding their structure, folding, and stability, far less is known about their elastic properties, even though they play mechanical roles in many cases such as tropomyosin in muscle contraction or neck stalks of kinesin or myosin motor proteins. Using computer simulations, we characterized elastic properties of coiled-coils, either globally or locally. Global bending stiffness of standard leucine zipper coiled-coils was calculated using normal mode analysis. Mutations in hydrophobic residues involved in the knob-into-hole interface between the two alpha-helices affect elasticity significantly, whereas charged side chains forming inter-helical salt bridges do not. This suggests that coiled-coils with less regular heptad periodicity may have regional variations in flexibility. We show this by the flexibility map of tropomyosin, which was constructed by a local fluctuation analysis. Overall, flexibility varies by more than twofold and increases towards the C-terminal region of the molecule. Describing the coiled-coil as a twisted tape, it is generally more flexible in the splay bending than in the bending of the broad face. Actin binding sites in alpha zones show local rigidity minima. Broken core regions due to acidic residues at the hydrophobic face such as the Asp137 and the Glu218 are found to be the most labile with moduli for splay and broad face bending as 70 nm and 116 nm respectively. Such variation in flexibility could be relevant to the tropomyosin function, especially for moving across the non-uniform surface of F-actin to regulate myosin binding.

  8. Modulation of elasticity in functionally distinct domains of the tropomyosin coiled-coil

    PubMed Central

    Lakkaraju, Sirish Kaushik; Hwang, Wonmuk

    2009-01-01

    Alpha-helical coiled-coils are common protein structural motifs. Whereas vast information is available regarding their structure, folding, and stability, far less is known about their elastic properties, even though they play mechanical roles in many cases such as tropomyosin in muscle contraction or neck stalks of kinesin or myosin motor proteins. Using computer simulations, we characterized elastic properties of coiled-coils, either globally or locally. Global bending stiffness of standard leucine zipper coiled-coils was calculated using normal mode analysis. Mutations in hydrophobic residues involved in the knob-into-hole interface between the two α-helices affect elasticity significantly, whereas charged side chains forming inter-helical salt bridges do not. This suggests that coiled-coils with less regular heptad periodicity may have regional variations in flexibility. We show this by the flexibility map of tropomyosin, which was constructed by a local fluctuation analysis. Overall, flexibility varies by more than twofold and increases towards the C-terminal region of the molecule. Describing the coiled-coil as a twisted tape, it is generally more flexible in the splay bending than in the bending of the broad face. Actin binding sites in α zones show local rigidity minima. Broken core regions due to acidic residues at the hydrophobic face such as the Asp137 and the Glu218 are found to be the most labile with moduli for splay and broad face bending as 70 nm and 116 nm respectively. Such variation in flexibility could be relevant to the tropomyosin function, especially for moving across the non-uniform surface of F-actin to regulate myosin binding. PMID:19830262

  9. The structure of the GemC1 coiled coil and its interaction with the Geminin family of coiled-coil proteins

    SciTech Connect

    Caillat, Christophe; Fish, Alexander; Pefani, Dafni-Eleftheria; Taraviras, Stavros; Lygerou, Zoi; Perrakis, Anastassis

    2015-10-31

    The GemC1 coiled-coil structure has subtle differences compared with its homologues Geminin and Idas. Co-expression experiments in cells and biophysical stability analysis of the Geminin-family coiled coils suggest that the GemC1 coiled coil alone is unstable. GemC1, together with Idas and Geminin, an important regulator of DNA-replication licensing and differentiation decisions, constitute a superfamily sharing a homologous central coiled-coil domain. To better understand this family of proteins, the crystal structure of a GemC1 coiled-coil domain variant engineered for better solubility was determined to 2.2 Å resolution. GemC1 shows a less typical coiled coil compared with the Geminin homodimer and the Geminin–Idas heterodimer structures. It is also shown that both in vitro and in cells GemC1 interacts with Geminin through its coiled-coil domain, forming a heterodimer that is more stable that the GemC1 homodimer. Comparative analysis of the thermal stability of all of the possible superfamily complexes, using circular dichroism to follow the unfolding of the entire helix of the coiled coil, or intrinsic tryptophan fluorescence of a unique conserved N-terminal tryptophan, shows that the unfolding of the coiled coil is likely to take place from the C-terminus towards the N-terminus. It is also shown that homodimers show a single-state unfolding, while heterodimers show a two-state unfolding, suggesting that the dimer first falls apart and the helices then unfold according to the stability of each protein. The findings argue that Geminin-family members form homodimers and heterodimers between them, and this ability is likely to be important for modulating their function in cycling and differentiating cells.

  10. Coiled tubing -- Operations and services

    SciTech Connect

    Sas-Jaworsky, A. II ); Blount, C.G. ); Tailby, R.J. )

    1993-06-01

    This paper reviews three industry authority's views on developments that will impact coiled tubing equipment and techniques for conventional land locations, Arctic and harsh offshore environments. Examples which are provided include the development of high-strength steels, composite pipe, integral lift devices, abrasive jet drilling, and extended reach drilling. It discusses the application of coiled tubing to well completion and maintenance, including the applications to plugged pipelines. The use of new steels and alloys help increase the corrosion resistance of the drilling stem along with greater load-bearing capacity. The economic advantages of coiled drilling versus jointed tubing drilling is somewhat more questionable as the cost for downhole motors and directional tools remain prohibitively high and borehole diameters remain small.

  11. Transient voltage oscillations in coils

    SciTech Connect

    Chowdhuri, P.

    1985-01-01

    Magnet coils may be excited into internal voltage oscillations by transient voltages. Such oscillations may electrically stress the magnet's dielectric components to many times its normal stress. This may precipitate a dielectric failure, and the attendant prolonged loss of service and costly repair work. Therefore, it is important to know the natural frequencies of oscillations of a magnet during the design stage, and to determine whether the expected switching transient voltages can excite the magnet into high-voltage internal oscillations. The series capacitance of a winding significantly affects its natural frequencies. However, the series capacitance is difficult to calculate, because it may comprise complex capacitance network, consisting of intra- and inter-coil turn-to-turn capacitances of the coil sections. A method of calculating the series capacitance of a winding is proposed. This method is rigorous but simple to execute. The time-varying transient voltages along the winding are also calculated.

  12. Electromagnetic Gun With Commutated Coils

    NASA Technical Reports Server (NTRS)

    Elliott, David G.

    1991-01-01

    Proposed electromagnetic gun includes electromagnet coil, turns of which commutated in sequence along barrel. Electrical current fed to two armatures by brushes sliding on bus bars in barrel. Interaction between armature currents and magnetic field from coil produces force accelerating armature, which in turn, pushes on projectile. Commutation scheme chosen so magnetic field approximately coincides and moves with cylindrical region defined by armatures. Scheme has disadvantage of complexity, but in return, enables designer to increase driving magnetic field without increasing armature current. Attainable muzzle velocity increased substantially.

  13. Coiled tubing; Operations and services

    SciTech Connect

    Sas-Jaworsky, A. II )

    1991-12-01

    This article outlines the minimum safety requirements that should be considered for onshore and offshore oil well service operations with coiled tubing equipment. These guidelines comply with Minerals Management Service (MMS) regulations issued on May 31, 1988, for offshore work. Where specific MMS regulations are sited, the regulation reference, Incident of Non-Compliance (INC), number is provided. These guidelines can be used by operators and contractors, and although U.S. offshore operations are emphasized, they are applicable wherever coiled tubing services are used.

  14. [Two Cases of Ruptured Cerebral Aneurysm Complicated with Delayed Coil Protrusion after Coil Embolization].

    PubMed

    Furukawa, Takashi; Ogata, Atsushi; Ebashi, Ryo; Takase, Yukinori; Masuoka, Jun; Kawashima, Masatou; Abe, Tatsuya

    2016-07-01

    We report two cases of delayed coil protrusion after coil embolization for ruptured cerebral aneurysms. Case 1:An 82-year-old woman with a subarachnoid hemorrhage due to a ruptured small anterior communicating artery aneurysm underwent successful coil embolization. Eighteen days after the procedure, coil protrusion from the aneurysm into the right anterior cerebral artery was observed without any symptoms. Further coil protrusion did not develop after 28 days. Case 2:A 78-year-old woman with a subarachnoid hemorrhage due to a ruptured small left middle cerebral artery aneurysm underwent successful coil embolization. Twenty days after the procedure, coil protrusion from the aneurysm into the left middle cerebral artery was observed, with a transient ischemic attack. Further coil protrusion did not develop. Both patients recovered with antithrombotic treatment. Even though delayed coil protrusion after coil embolization is rare, it should be recognized as a long-term complication of coil embolization for cerebral aneurysms.

  15. A MRI rotary phased array head coil.

    PubMed

    Li, Bing Keong; Weber, Ewald; Crozier, Stuart

    2013-08-01

    A new rotary phased array (RPA) head coil that can provide homogenous brain images comparable to volumetric radiofrequency coils is proposed for magnetic resonance brain imaging applications. The design of the RPA head coil is a departure from conventional circumferential array design method, as coil elements of the RPA head coil have a "paddle-like" structure consisting of a pair of main conductors located on opposite sides, inserted equi-angularly around and over the head. A prototype 2T receive-only 4-element RPA head coil was constructed and experimentally tested against a conventional receive-only 4-element phased array head coil and a commercial receive-only quadrature birdcage head coil. Homogenous phantom images acquired by the RPA head coil show that signal intensity deep at the center of the phantom was improved as compared to the conventional phased array head coil and this improvement allow the RPA head coil to acquire homogenous brain images similar to brain images acquired with the birdcage head coil. In addition, partial parallel imaging was used in conjunction with the RPA head coil to enable rapid imaging.

  16. Coil Embolization for Intracranial Aneurysms

    PubMed Central

    2006-01-01

    Executive Summary Objective To determine the effectiveness and cost-effectiveness of coil embolization compared with surgical clipping to treat intracranial aneurysms. The Technology Endovascular coil embolization is a percutaneous approach to treat an intracranial aneurysm from within the blood vessel without the need of a craniotomy. In this procedure, a microcatheter is inserted into the femoral artery near the groin and navigated to the site of the aneurysm. Small helical platinum coils are deployed through the microcatheter to fill the aneurysm, and prevent it from further expansion and rupture. Health Canada has approved numerous types of coils and coil delivery systems to treat intracranial aneurysms. The most favoured are controlled detachable coils. Coil embolization may be used with other adjunct endovascular devices such as stents and balloons. Background Intracranial Aneurysms Intracranial aneurysms are the dilation or ballooning of part of a blood vessel in the brain. Intracranial aneurysms range in size from small (<12 mm in diameter) to large (12–25 mm), and to giant (>25 mm). There are 3 main types of aneurysms. Fusiform aneurysms involve the entire circumference of the artery; saccular aneurysms have outpouchings; and dissecting aneurysms have tears in the arterial wall. Berry aneurysms are saccular aneurysms with well-defined necks. Intracranial aneurysms may occur in any blood vessel of the brain; however, they are most commonly found at the branch points of large arteries that form the circle of Willis at the base of the brain. In 85% to 95% of patients, they are found in the anterior circulation. Aneurysms in the posterior circulation are less frequent, and are more difficult to treat surgically due to inaccessibility. Most intracranial aneurysms are small and asymptomatic. Large aneurysms may have a mass effect, causing compression on the brain and cranial nerves and neurological deficits. When an intracranial aneurysm ruptures and bleeds

  17. Finite element coiled cochlea model

    NASA Astrophysics Data System (ADS)

    Isailovic, Velibor; Nikolic, Milica; Milosevic, Zarko; Saveljic, Igor; Nikolic, Dalibor; Radovic, Milos; Filipović, Nenad

    2015-12-01

    Cochlea is important part of the hearing system, and thanks to special structure converts external sound waves into neural impulses which go to the brain. Shape of the cochlea is like snail, so geometry of the cochlea model is complex. The simplified cochlea coiled model was developed using finite element method inside SIFEM FP7 project. Software application is created on the way that user can prescribe set of the parameters for spiral cochlea, as well as material properties and boundary conditions to the model. Several mathematical models were tested. The acoustic wave equation for describing fluid in the cochlea chambers - scala vestibuli and scala timpani, and Newtonian dynamics for describing vibrations of the basilar membrane are used. The mechanical behavior of the coiled cochlea was analyzed and the third chamber, scala media, was not modeled because it does not have a significant impact on the mechanical vibrations of the basilar membrane. The obtained results are in good agreement with experimental measurements. Future work is needed for more realistic geometry model. Coiled model of the cochlea was created and results are compared with initial simplified coiled model of the cochlea.

  18. Coiled tubing; Operations and services

    SciTech Connect

    Welch, J.L. ); Whitlow, R.R. )

    1992-07-01

    This paper reports that pulling tubing to clean out a production liner at Prudhoe Bay Unit Western Operating Area (PBU WOA) averages $600,000 to $800,000. Coiled tubing underreaming was developed to accomplish this objective at lower costs. Beginning in 1988, these operations have been improved through several generations of procedures and tool designs. Using current technology, the underreamer, in conjunction with coiled tubing, can reduce the cost of drilling out to a liner to about $50,000 or $100,000, depending on the amount and type of material to be removed. PBU WOA, operated by BP Exploration, produces about 600,000 bopd from 395 wells. Another 61 wells are used to inject produced water, seawater and miscible fluids. Most of the remedial well servicing operations are conducted using coiled tubing (CT). Three contract coiled tubing units (CTUs) work daily, performing wellbore cleanouts, stimulations, inflatable bridge plug installations and cement squeeze operations. About 42 underreaming jobs were performed from 1990 to 1991 at PBU WOA for an average cost of between $75,000 and $100,000, a cost savings of $500,000 power well compared to pulling tubing and cleaning out the wells conventionally.

  19. Pulsed COIL initiated by discharge

    NASA Astrophysics Data System (ADS)

    Yuryshev, Nikolai N.

    2004-06-01

    Pulsed mode makes COIL possible to produce pulses which power can significantly exceed that of CW COIL mode at the same flowrate of chemicals. Such a mode can find application in material treatment, in drilling for oil wells, as an optical locator, in laser frequency conversion via non-linear processes, in laser propulsion, etc. The method of volume generation of iodine atoms was shown to be the most effective one in generation of high power pulses. The base of method is substitution of molecular iodine in operation mixture for iodide which is stable in the mixture with singlet oxygen, and subsequent forced dissociation of iodide. In this approach the advantage of direct I-atom injection in laser active medium is demonstrated. The comparison of experimental results obtained with different sources used for iodide dissociation shows the electric discharge provides significantly higher electrical laser efficiency in comparison with photolysis initiation. At the same time, the specific energy of the electric discharge initiated COIL is at disadvantage in relation with that obtained with photolysis initiation. This fact is a result of active medium temperature increase due to insufficient initiation selectivity of electric discharge. Both longitudinal and transverse electric discharges were investigated as possible sources for laser initiation. The transverse discharge is more promising for increased operation pressure of active medium. The operation pressure is limited by dark reaction of iodide with singlet delta oxygen. The repetitively pulsed operation with repetition rate of up to 75 Hz of pulsed COIL is demonstrated.

  20. Wedding ring shaped excitation coil

    DOEpatents

    MacLennan, Donald A.; Tsai, Peter

    2001-01-01

    A high frequency inductively coupled electrodeless lamp includes an excitation coil with an effective electrical length which is less than one half wavelength of a driving frequency applied thereto, preferably much less. The driving frequency may be greater than 100 MHz and is preferably as high as 915 MHz. Preferably, the excitation coil is configured as a non-helical, semi-cylindrical conductive surface having less than one turn, in the general shape of a wedding ring. At high frequencies, the current in the coil forms two loops which are spaced apart and parallel to each other. Configured appropriately, the coil approximates a Helmholtz configuration. The lamp preferably utilizes an bulb encased in a reflective ceramic cup with a pre-formed aperture defined therethrough. The ceramic cup may include structural features to aid in alignment and/or a flanged face to aid in thermal management. The lamp head is preferably an integrated lamp head comprising a metal matrix composite surrounding an insulating ceramic with the excitation integrally formed on the ceramic. A novel solid-state oscillator preferably provides RF power to the lamp. The oscillator is a single active element device capable of providing over 70 watts of power at over 70% efficiency.

  1. Coupled coils, magnets and Lenz's law

    NASA Astrophysics Data System (ADS)

    Thompson, Frank

    2010-03-01

    Great scientists in the past have experimented with coils and magnets. Here we have a variation where coupling occurs between two coils and the oscillatory motion of two magnets to give somewhat surprising results.

  2. Alternating current losses in superconducting coils

    NASA Technical Reports Server (NTRS)

    Wipf, S. L.; Guderjahn, C. A.

    1972-01-01

    Report examines relationship between coil loss and frequency and heat loss in coil as a function of the magnetic field H. Information is of value to manufacturers of superconducting magnets, motors and generators.

  3. Coupled Coils, Magnets and Lenz's Law

    ERIC Educational Resources Information Center

    Thompson, Frank

    2010-01-01

    Great scientists in the past have experimented with coils and magnets. Here we have a variation where coupling occurs between two coils and the oscillatory motion of two magnets to give somewhat surprising results. (Contains 6 figures and 1 footnote.)

  4. Coiled tubing solves multiple downhole problems

    SciTech Connect

    Bedford, S. ); Smith, I. )

    1994-11-01

    Declining reservoir pressure and water breakthrough in the UK North Sea Magnus field has coincided with general advances in application of coiled tubing and a continuous drive to reduce operating costs, particularly in a climate of weak oil prices. These factors have led to a dramatic increase in diversity and volume of coiled tubing interventions. In the following article, coiled tubing interventions, and results of those interventions, are discussed. An assessment of future coiled tubing activity on Magnus field is provided.

  5. Rotor assembly including superconducting magnetic coil

    DOEpatents

    Snitchler, Gregory L.; Gamble, Bruce B.; Voccio, John P.

    2003-01-01

    Superconducting coils and methods of manufacture include a superconductor tape wound concentrically about and disposed along an axis of the coil to define an opening having a dimension which gradually decreases, in the direction along the axis, from a first end to a second end of the coil. Each turn of the superconductor tape has a broad surface maintained substantially parallel to the axis of the coil.

  6. Bow-shaped toroidal field coils

    SciTech Connect

    Bonanos, P.

    1981-05-01

    Design features of Bow-Shaped Toroidal Field Coils are described and compared with circular and D shaped coils. The results indicate that bow coils can produce higher field strengths, store more energy and be made demountable. The design offers the potential for the production of ultrahigh toroidal fields. Included are representative coil shapes and their engineering properties, a suggested structural design and an analysis of a specific case.

  7. Multi-Canted Coils, Tubes, and Structures

    NASA Technical Reports Server (NTRS)

    Jaster, Mark L. (Inventor)

    2015-01-01

    Coil, tube, and other structures configured with a plurality of individual coils, internal structures, legs or extensions with each having multiple cants per coil, internal structure, leg or extension, and wherein the cants formed therein allow for a load-deflection force when each is compressed. In addition, any horizontal or moment forces are substantially reduced and/or eliminated when a downward vertical force is applied, as minimal or no torsion is created in the individual coils, legs or extensions.

  8. The intrinsic conformational features of amino acids from a protein coil library and their applications in force field development.

    PubMed

    Jiang, Fan; Han, Wei; Wu, Yun-Dong

    2013-03-14

    The local conformational (φ, ψ, χ) preferences of amino acid residues remain an active research area, which are important for the development of protein force fields. In this perspective article, we first summarize spectroscopic studies of alanine-based short peptides in aqueous solution. While most studies indicate a preference for the P(II) conformation in the unfolded state over α and β conformations, significant variations are also observed. A statistical analysis from various coil libraries of high-resolution protein structures is then summarized, which gives a more coherent view of the local conformational features. The φ, ψ, χ distributions of the 20 amino acids have been obtained from a protein coil library, considering both backbone and side-chain conformational preferences. The intrinsic side-chain χ(1) rotamer preference and χ(1)-dependent Ramachandran plot can be generally understood by combining the interaction of the side-chain Cγ/Oγ atom with two neighboring backbone peptide groups. Current all-atom force fields such as AMBER ff99sb-ILDN, ff03 and OPLS-AA/L do not reproduce these distributions well. A method has been developed by combining the φ, ψ plot of alanine with the influence of side-chain χ(1) rotamers to derive the local conformational features of various amino acids. It has been further applied to improve the OPLS-AA force field. The modified force field (OPLS-AA/C) reproduces experimental (3)J coupling constants for various short peptides quite well. It also better reproduces the temperature-dependence of the helix-coil transition for alanine-based peptides. The new force field can fold a series of peptides and proteins with various secondary structures to their experimental structures. MD simulations of several globular proteins using the improved force field give significantly less deviation (RMSD) to experimental structures. The results indicate that the local conformational features from coil libraries are valuable for

  9. GBNV encoded movement protein (NSm) remodels ER network via C-terminal coiled coil domain

    SciTech Connect

    Singh, Pratibha; Savithri, H.S.

    2015-08-15

    Plant viruses exploit the host machinery for targeting the viral genome–movement protein complex to plasmodesmata (PD). The mechanism by which the non-structural protein m (NSm) of Groundnut bud necrosis virus (GBNV) is targeted to PD was investigated using Agrobacterium mediated transient expression of NSm and its fusion proteins in Nicotiana benthamiana. GFP:NSm formed punctuate structures that colocalized with mCherry:plasmodesmata localized protein 1a (PDLP 1a) confirming that GBNV NSm localizes to PD. Unlike in other movement proteins, the C-terminal coiled coil domain of GBNV NSm was shown to be involved in the localization of NSm to PD, as deletion of this domain resulted in the cytoplasmic localization of NSm. Treatment with Brefeldin A demonstrated the role of ER in targeting GFP NSm to PD. Furthermore, mCherry:NSm co-localized with ER–GFP (endoplasmic reticulum targeting peptide (HDEL peptide fused with GFP). Co-expression of NSm with ER–GFP showed that the ER-network was transformed into vesicles indicating that NSm interacts with ER and remodels it. Mutations in the conserved hydrophobic region of NSm (residues 130–138) did not abolish the formation of vesicles. Additionally, the conserved prolines at positions 140 and 142 were found to be essential for targeting the vesicles to the cell membrane. Further, systematic deletion of amino acid residues from N- and C-terminus demonstrated that N-terminal 203 amino acids are dispensable for the vesicle formation. On the other hand, the C-terminal coiled coil domain when expressed alone could also form vesicles. These results suggest that GBNV NSm remodels the ER network by forming vesicles via its interaction through the C-terminal coiled coil domain. Interestingly, NSm interacts with NP in vitro and coexpression of these two proteins in planta resulted in the relocalization of NP to PD and this relocalization was abolished when the N-terminal unfolded region of NSm was deleted. Thus, the NSm

  10. Split Coil Forms for Rotary Transformers

    NASA Technical Reports Server (NTRS)

    Mclyman, C. W. T.

    1982-01-01

    Split cores for rotor and stator windings of rotary transformer mounted around their respective coils (which are in bobbins) and cemented together. This arrangement simplifies winding of stator coil to go in a slot in inner diameter of stator coil. One practical application of rotary transformers fabricated according to this technique is for centrifuges, in which conventional sliprings are of uncertain reliability.

  11. Inductively coupled wireless RF coil arrays.

    PubMed

    Bulumulla, S B; Fiveland, E; Park, K J; Foo, T K; Hardy, C J

    2015-04-01

    As the number of coils increases in multi-channel MRI receiver-coil arrays, RF cables and connectors become increasingly bulky and heavy, degrading patient comfort and slowing workflow. Inductive coupling of signals provides an attractive "wireless" approach, with the potential to reduce coil weight and cost while simplifying patient setup. In this work, multi-channel inductively coupled anterior arrays were developed and characterized for 1.5T imaging. These comprised MR receiver coils inductively (or "wirelessly") linked to secondary or "sniffer" coils whose outputs were transmitted via preamps to the MR system cabinet. The induced currents in the imaging coils were blocked by passive diode circuits during RF transmit. The imaging arrays were totally passive, obviating the need to deliver power to the coils, and providing lightweight, untethered signal reception with easily positioned coils. Single-shot fast spin echo images were acquired from 5 volunteers using a 7-element inductively coupled coil array and a conventionally cabled 7-element coil array of identical geometry, with the inductively-coupled array showing a relative signal-to-noise ratio of 0.86 +/- 0.07. The concept was extended to a larger 9-element coil array to demonstrate the effect of coil element size on signal transfer and RF-transmit blocking.

  12. Coiled-coil coactivators play a structural role mediating interactions in hypoxia-inducible factor heterodimerization.

    PubMed

    Guo, Yirui; Scheuermann, Thomas H; Partch, Carrie L; Tomchick, Diana R; Gardner, Kevin H

    2015-03-20

    The hypoxia-inducible factor complex (HIF-α·aryl hydrocarbon receptor nuclear translocator (ARNT)) requires association with several transcription coactivators for a successful cellular response to hypoxic stress. In addition to the conventional global transcription coactivator CREB-binding protein/p300 (CBP/p300) that binds to the HIF-α transactivation domain, a new group of transcription coactivators called the coiled-coil coactivators (CCCs) interact directly with the second PER-ARNT-SIM (PAS) domain of ARNT (ARNT PAS-B). These less studied transcription coactivators play essential roles in the HIF-dependent hypoxia response, and CCC misregulation is associated with several forms of cancer. To better understand CCC protein recruitment by the heterodimeric HIF transcription factor, we used x-ray crystallography, NMR spectroscopy, and biochemical methods to investigate the structure of the ARNT PAS-B domain in complex with the C-terminal fragment of a coiled-coil coactivator protein, transforming acidic coiled-coil coactivator 3 (TACC3). We found that the HIF-2α PAS-B domain also directly interacts with TACC3, motivating an NMR data-derived model suggesting a means by which TACC3 could form a ternary complex with HIF-2α PAS-B and ARNT PAS-B via β-sheet/coiled-coil interactions. These findings suggest that TACC3 could be recruited as a bridge to cooperatively mediate between the HIF-2α PAS-B·ARNT PAS-B complex, thereby participating more directly in HIF-dependent gene transcription than previously anticipated.

  13. Coiled-coil Coactivators Play a Structural Role Mediating Interactions in Hypoxia-inducible Factor Heterodimerization*

    PubMed Central

    Guo, Yirui; Scheuermann, Thomas H.; Partch, Carrie L.; Tomchick, Diana R.; Gardner, Kevin H.

    2015-01-01

    The hypoxia-inducible factor complex (HIF-α·aryl hydrocarbon receptor nuclear translocator (ARNT)) requires association with several transcription coactivators for a successful cellular response to hypoxic stress. In addition to the conventional global transcription coactivator CREB-binding protein/p300 (CBP/p300) that binds to the HIF-α transactivation domain, a new group of transcription coactivators called the coiled-coil coactivators (CCCs) interact directly with the second PER-ARNT-SIM (PAS) domain of ARNT (ARNT PAS-B). These less studied transcription coactivators play essential roles in the HIF-dependent hypoxia response, and CCC misregulation is associated with several forms of cancer. To better understand CCC protein recruitment by the heterodimeric HIF transcription factor, we used x-ray crystallography, NMR spectroscopy, and biochemical methods to investigate the structure of the ARNT PAS-B domain in complex with the C-terminal fragment of a coiled-coil coactivator protein, transforming acidic coiled-coil coactivator 3 (TACC3). We found that the HIF-2α PAS-B domain also directly interacts with TACC3, motivating an NMR data-derived model suggesting a means by which TACC3 could form a ternary complex with HIF-2α PAS-B and ARNT PAS-B via β-sheet/coiled-coil interactions. These findings suggest that TACC3 could be recruited as a bridge to cooperatively mediate between the HIF-2α PAS-B·ARNT PAS-B complex, thereby participating more directly in HIF-dependent gene transcription than previously anticipated. PMID:25627682

  14. Membrane fusion mediated by coiled coils: a hypothesis.

    PubMed Central

    Bentz, J

    2000-01-01

    A molecular model of the low-pH-induced membrane fusion by influenza hemagglutinin (HA) is proposed based upon the hypothesis that the conformational change to the extended coiled coil creates a high-energy hydrophobic membrane defect in the viral envelope or HA expressing cell. It is known that 1) an aggregate of at least eight HAs is required at the fusion site, yet only two or three of these HAs need to undergo the "essential" conformational change for the first fusion pore to form (Bentz, J. 2000. Biophys. J. 78:000-000); 2) the formation of the first fusion pore signifies a stage of restricted lipid flow into the nascent fusion site; and 3) some HAs can partially insert their fusion peptides into their own viral envelopes at low pH. This suggests that the committed step for HA-mediated fusion begins with a tightly packed aggregate of HAs whose fusion peptides are inserted into their own viral envelope, which causes restricted lateral lipid flow within the HA aggregate. The transition of two or three HAs in the center of the aggregate to the extended coiled coil extracts the fusion peptide and creates a hydrophobic defect in the outer monolayer of the virion, which is stabilized by the closely packed HAs. These HAs are inhibited from diffusing away from the site to admit lateral lipid flow, in part because that would initially increase the surface area of hydrophobic exposure. The other obvious pathway to heal this hydrophobic defect, or some descendent, is recruitment of lipids from the outer monolayer of the apposed target membrane, i.e., fusion. Other viral fusion proteins and the SNARE fusion protein complex appear to fit within this hypothesis. PMID:10653801

  15. Normal conducting transfer coil for SQUID NDE

    NASA Astrophysics Data System (ADS)

    Kondo, Tadayuki; Itozaki, Hideo

    2004-03-01

    We have investigated the performance of a normal conducting transfer coil (n-coil) for nondestructive evaluation with a SQUID. The transfer efficiency, which depends on frequency and wire impedance, has been calculated for several coil designs to determine the performance of the n-coil. We have fabricated a 30 mm diameter n-coil and examined its performance with a high-TC SQUID. If both the pick-up coil and the input coil have 50 turns, then at high frequencies the magnetic field produced by the input coil becomes 50% of the magnetic field at the pick-up coil, with a low cut-off frequency of 2 kHz. The experimental result agrees well with a numerical calculation, which suggests a magnitude of magnetic field detected by our SQUID equal to the magnitude of the quasi-uniform magnetic field produced by the input coil. We also confirmed that the thermal noise of the n-coil, produced by its normal resistance, does not become higher than the intrinsic magnetic field noise of the SQUID.

  16. Starch gelatinization in coiled heaters.

    PubMed

    Kelder, J D H; Ptasinski, K J; Kerkhof, P J A M

    2004-01-01

    A gelatinizing model food derived from a 5% w/w cross-linked waxy maize starch suspension was simulated in coiled heaters to assess the impact of centrifugal forces on flow and heat transfer. For four coil diameters (D = 0.25, 1, 2.5, and infinity m) and three flow rates (w = 0.5, 1, and 2 m/s), heat transfer, viscous development, and the severity of channeling were evaluated. Increasing curvature proved to suppress channeling as a result of more uniform heating and gelatinization. The maximum attainable viscosity was also higher, implying a lower starch consumption for a target viscosity. Higher flow rates necessitated longer heaters, and the maximum viscosity decreased. Moderate product velocities are therefore recommended.

  17. Three-dimensional coil inductor

    DOEpatents

    Bernhardt, Anthony F.; Malba, Vincent

    2002-01-01

    A three-dimensional coil inductor is disclosed. The inductor includes a substrate; a set of lower electrically conductive traces positioned on the substrate; a core placed over the lower traces; a set of side electrically conductive traces laid on the core and the lower traces; and a set of upper electrically conductive traces attached to the side traces so as to form the inductor. Fabrication of the inductor includes the steps of forming a set of lower traces on a substrate; positioning a core over the lower traces; forming a set of side traces on the core; connecting the side traces to the lower traces; forming a set of upper traces on the core; and connecting the upper traces to the side traces so as to form a coil structure.

  18. Practical Aspects of Birdcage Coils

    NASA Astrophysics Data System (ADS)

    Doty, F. David; Entzminger, George; Hauck, Cory D.; Staab, John P.

    1999-05-01

    Numerical modeling and experimental results are presented for a variety of birdcages for high-field MRI microscopy. The data include the first published numerical calculations and experimental measurements of magnetic filling factors of birdcages or other MRI coils. Fast, 3D calculations for shielded coils are demonstrated using the Biot-Savart law along with energy minimization. It is shown that the near-field, higher-order inhomogeneity effects remaining after a first-order, asymmetry correction may easily exceed 20% in situations where it is desirable to maximize filling factor. It is also found that an order-of-magnitude improvement in the accuracy of predicted capacitor values may be achieved by using a more detailed circuit model of the birdcage resonator.

  19. Practical aspects of birdcage coils.

    PubMed

    Doty, F D; Entzminger, G; Hauck, C D; Staab, J P

    1999-05-01

    Numerical modeling and experimental results are presented for a variety of birdcages for high-field MRI microscopy. The data include the first published numerical calculations and experimental measurements of magnetic filling factors of birdcages or other MRI coils. Fast, 3D calculations for shielded coils are demonstrated using the Biot-Savart law along with energy minimization. It is shown that the near-field, higher-order inhomogeneity effects remaining after a first-order, asymmetry correction may easily exceed 20% in situations where it is desirable to maximize filling factor. It is also found that an order-of-magnitude improvement in the accuracy of predicted capacitor values may be achieved by using a more detailed circuit model of the birdcage resonator.

  20. Equations determine coiled tubing collapse pressure

    SciTech Connect

    Avakov, V.; Taliaferro, W.

    1995-07-24

    A set of equations has been developed for calculating pipe collapse pressure for oval tubing such as coiled tubing. When coiled tubing is placed onto a reel, the tubing is forced into an oval shape and never again returns to perfect roundness because the coiling process exceeds the plasticity limits of the tubing. Straightening the tubing for the trip into the well does not restore roundness. The consequence of this physical property is that all coiled tubing collapse pressure calculations should be made considering oval tubing, not round tubing. Tubing collapse can occur when formation pressure against the coiled tubing exceeds the collapse resistance inherent in the coiled tubing. As coiled tubing becomes more oval in shape, it becomes more oval in shape, it becomes more susceptible to collapse from outside pressure.

  1. Rectangular coils optimization for wireless power transmission

    NASA Astrophysics Data System (ADS)

    Duan, Zhu; Guo, Yong-Xin; Kwong, Dim-Lee

    2012-01-01

    Wirelessly coupled coils are crucial for efficient power transmission in various applications. Previous design methods are only eligible for improving the efficiency of circular or square coils. This paper presents a method of characterizing and optimizing rectangular coils used in inductively coupled systems. After setting up a lumped component model for inductive coils, the efficiency can be expressed in terms of geometrical parameters of the coils. Subsequently, the power efficiency can be plotted versus these parameters in Matlab, thus getting the desired coils for optimum power transfer. With this design procedure from mathematical optimization, we eventually designed two rectangular coils spaced 10 mm apart, which achieves a power transmission efficiency of 46.4% at a frequency of 3 MHz. The design methodology is verified by simulation and measurement.

  2. Segmented Coil Fails In Steps

    NASA Technical Reports Server (NTRS)

    Stedman, Ronald S.

    1990-01-01

    Electromagnetic coil degrades in steps when faults occur, continues to operate at reduced level instead of failing catastrophically. Made in segments connected in series and separated by electrically insulating barriers. Fault does not damage adjacent components or create hazard. Used to control valves in such critical applications as cooling systems of power generators and chemical process equipment, where flammable liquids or gases handled. Also adapts to electrical control of motors.

  3. Coiled transmission line pulse generators

    DOEpatents

    McDonald, Kenneth Fox

    2010-11-09

    Methods and apparatus are provided for fabricating and constructing solid dielectric "Coiled Transmission Line" pulse generators in radial or axial coiled geometries. The pour and cure fabrication process enables a wide variety of geometries and form factors. The volume between the conductors is filled with liquid blends of monomers, polymers, oligomers, and/or cross-linkers and dielectric powders; and then cured to form high field strength and high dielectric constant solid dielectric transmission lines that intrinsically produce ideal rectangular high voltage pulses when charged and switched into matched impedance loads. Voltage levels may be increased by Marx and/or Blumlein principles incorporating spark gap or, preferentially, solid state switches (such as optically triggered thyristors) which produce reliable, high repetition rate operation. Moreover, these Marxed pulse generators can be DC charged and do not require additional pulse forming circuitry, pulse forming lines, transformers, or an a high voltage spark gap output switch. The apparatus accommodates a wide range of voltages, impedances, pulse durations, pulse repetition rates, and duty cycles. The resulting mobile or flight platform friendly cylindrical geometric configuration is much more compact, light-weight, and robust than conventional linear geometries, or pulse generators constructed from conventional components. Installing additional circuitry may accommodate optional pulse shape improvements. The Coiled Transmission Lines can also be connected in parallel to decrease the impedance, or in series to increase the pulse length.

  4. Underbalanced coiled tubing sidetrack successful

    SciTech Connect

    Adam, J.; Berry, M.

    1995-12-18

    The technique of drilling through a completion string, underbalanced, with coiled tubing eliminated some of the problems encountered with overbalanced drilling in a group of offset wells. This project confirmed that performing drilling operations in live wells can be carried out safely and effectively. Dalen is a sour gas field in the eastern part of The Netherlands and produces from vertical fractures in the Zechstein carbonate reservoir. The proposal for Dalen 2 was to abandon the lower section of the original hole and subsequently sidetrack conventionally to the top of the reservoir, run and cement a 5-in. liner, complete the well with a 5-in. monobore completion, and install the christmas tree. This part of the operation would be performed with a workover hoist. Thereafter, a 3 3/4-in. hole would be drilled through the completion and into the reservoir, underbalanced with coiled tubing. The drilling proposal had to address a number of key issues: creating underbalanced conditions; handling sour gas production at surface; handling and treating drilling fluids at surface; removing drilled solids from the returned fluid system; and deploying a long coiled tubing drilling bottom hole assembly (BHA) into a live well. The paper discusses planning, legislative issues, well preparation, the drilling program, and lessons learned.

  5. A comparison of coupling efficiencies for a Stix coil and an m equals 1 coil

    NASA Technical Reports Server (NTRS)

    Sigman, D. R.

    1972-01-01

    This theoretical and experimental study compares the ion-cyclotron wave generating characteristics of a Stix coil (which generates waves with azimuthal mode number m = 0) with those of a coil which produces primarily m = + or -1 ion-cyclotron modes. The theoretical work of J.E. Hipp, which predicted very good coupling for the m = 1 coil, was extended to determine the scaling laws for plasma column radius and coil wavelength. Experimentally, an m = 1 coil and an m = 0 coil were used to generate ion-cyclotron waves on a beam generated plasma column with electron density = 10 to the 12th power/cu cm. Coupling resonances with peak efficiencies of approximately 40 to 50 percent were measured for both coils in low power (approximately 10k W) experiments. For equal power transfer to the plasma, the m = 0 coil voltage was more than a factor of two greater than that for the m = 1 coil.

  6. Design, fabrication, and testing of the pulse coils for the Large Coil Test Facility

    SciTech Connect

    Chipley, K.K.; Parrelli, A.P.

    1983-01-01

    The Large Coil Test Facility (LCTF) will be able to test up to six large superconducting coils similar to those required for a tokamak reactor. In order to simulate the transient vertical field that will be part of the magnetic environment of an operating tokamak reactor, a set of pulse coils will be used in the facility. This set of two coils can be positioned in the bore of any of the test coils to provide a transient magnetic field to that particular coil. This paper describes the final design of the pulse coils and discusses the fabrication techniques used to build these coils. An extensive testing program has been carried out during fabrication to ensure that the coils will function satisfactorily.

  7. A Mechanical Coil Insertion System for Endovascular Coil Embolization of Intracranial Aneurysms

    PubMed Central

    Haraguchi, K.; Miyachi, S.; Matsubara, N.; Nagano, Y.; Yamada, H.; Marui, N.; Sano, A.; Fujimoto, H.; Izumi, T.; Yamanouchi, T.; Asai, T.; Wakabayashi, T.

    2013-01-01

    Summary Like other fields of medicine, robotics and mechanization might be introduced into endovascular coil embolization of intracranial aneurysms for effective treatment. We have already reported that coil insertion force could be smaller and more stable when the coil delivery wire is driven mechanically at a constant speed. Another background is the difficulty in synchronizing operators' minds and hands when two operators control the microcatheter and the coil respectively. We have therefore developed a mechanical coil insertion system enabling a single operator to insert coils at a fixed speed while controlling the microcatheter. Using our new system, the operator manipulated the microcatheter with both hands and drove the coil using foot switches simultaneously. A delivery wire force sensor previously reported was used concurrently, allowing the operator to detect excessive stress on the wire. In vitro coil embolization was performed using three methods: simple mechanical advance of the coil; simple mechanical advance of the coil with microcatheter control; and driving (forward and backward) of the coil using foot switches in addition to microcatheter control. The system worked without any problems, and did not interfere with any procedures. In experimental coil embolization, delivery wire control using the foot switches as well as microcatheter manipulation helped to achieve successful insertion of coils. This system could offer the possibility of developing safer and more efficient coil embolization. Although we aim at total mechanization and automation of procedures in the future, microcatheter manipulation and synchronized delivery wire control are still indispensable using this system. PMID:23693038

  8. Optimized Geometry for Superconducting Sensing Coils

    NASA Technical Reports Server (NTRS)

    Eom, Byeong Ho; Pananen, Konstantin; Hahn, Inseob

    2008-01-01

    An optimized geometry has been proposed for superconducting sensing coils that are used in conjunction with superconducting quantum interference devices (SQUIDs) in magnetic resonance imaging (MRI), magnetoencephalography (MEG), and related applications in which magnetic fields of small dipoles are detected. In designing a coil of this type, as in designing other sensing coils, one seeks to maximize the sensitivity of the detector of which the coil is a part, subject to geometric constraints arising from the proximity of other required equipment. In MRI or MEG, the main benefit of maximizing the sensitivity would be to enable minimization of measurement time. In general, to maximize the sensitivity of a detector based on a sensing coil coupled with a SQUID sensor, it is necessary to maximize the magnetic flux enclosed by the sensing coil while minimizing the self-inductance of this coil. Simply making the coil larger may increase its self-inductance and does not necessarily increase sensitivity because it also effectively increases the distance from the sample that contains the source of the signal that one seeks to detect. Additional constraints on the size and shape of the coil and on the distance from the sample arise from the fact that the sample is at room temperature but the coil and the SQUID sensor must be enclosed within a cryogenic shield to maintain superconductivity.

  9. Electromagnetic levitation coil fabrication technique for MSFC containerless processing facilities

    NASA Technical Reports Server (NTRS)

    Ethridge, E. C.; Theiss, J.; Curreri, P. A.; Abbaschian, G. J.

    1983-01-01

    A technique is described for more reproducible fabrication of electromagnetic levitation coils. A split mandrel was developed upon which the coil is wound. After fabrication the mandrel can be disassembled to remove it from the coil. Previously, a full day was required to fabricate a levitation coil and the success rate for a functional coil was only 50 percent. About eight coils may be completed in one day using the technique developed and 95 percent of them are good levitation coils.

  10. Crystal Structure of a Super Leucine Zipper an Extended Two-Stranded Super Long Coiled Coil

    SciTech Connect

    J Diao

    2011-12-31

    Coiled coil is a ubiquitous structural motif in proteins, with two to seven alpha helices coiled together like the strands of a rope, and coiled coil folding and assembly is not completely understood. A GCN4 leucine zipper mutant with four mutations of K3A, D7A, Y17W, and H18N has been designed, and the crystal structure has been determined at 1.6 {angstrom} resolution. The peptide monomer shows a helix trunk with short curved N- and C-termini. In the crystal, two monomers cross in 35{sup o} and form an X-shaped dimer, and each X-shaped dimer is welded into the next one through sticky hydrophobic ends, thus forming an extended two-stranded, parallel, super long coiled coil rather than a discrete, two-helix coiled coil of the wild-type GCN4 leucine zipper. Leucine residues appear at every seventh position in the super long coiled coil, suggesting that it is an extended super leucine zipper. Compared to the wild-type leucine zipper, the N-terminus of the mutant has a dramatic conformational change and the C-terminus has one more residue Glu 32 determined. The mutant X-shaped dimer has a large crossing angle of 35{sup o} instead of 18{sup o} in the wild-type dimer. The results show a novel assembly mode and oligomeric state of coiled coil, and demonstrate that mutations may affect folding and assembly of the overall coiled coil. Analysis of the formation mechanism of the super long coiled coil may help understand and design self-assembling protein fibers.

  11. Critical evaluation of in silico methods for prediction of coiled-coil domains in proteins.

    PubMed

    Li, Chen; Ching Han Chang, Catherine; Nagel, Jeremy; Porebski, Benjamin T; Hayashida, Morihiro; Akutsu, Tatsuya; Song, Jiangning; Buckle, Ashley M

    2016-03-01

    Coiled-coils refer to a bundle of helices coiled together like strands of a rope. It has been estimated that nearly 3% of protein-encoding regions of genes harbour coiled-coil domains (CCDs). Experimental studies have confirmed that CCDs play a fundamental role in subcellular infrastructure and controlling trafficking of eukaryotic cells. Given the importance of coiled-coils, multiple bioinformatics tools have been developed to facilitate the systematic and high-throughput prediction of CCDs in proteins. In this article, we review and compare 12 sequence-based bioinformatics approaches and tools for coiled-coil prediction. These approaches can be categorized into two classes: coiled-coil detection and coiled-coil oligomeric state prediction. We evaluated and compared these methods in terms of their input/output, algorithm, prediction performance, validation methods and software utility. All the independent testing data sets are available at http://lightning.med.monash.edu/coiledcoil/. In addition, we conducted a case study of nine human polyglutamine (PolyQ) disease-related proteins and predicted CCDs and oligomeric states using various predictors. Prediction results for CCDs were highly variable among different predictors. Only two peptides from two proteins were confirmed to be CCDs by majority voting. Both domains were predicted to form dimeric coiled-coils using oligomeric state prediction. We anticipate that this comprehensive analysis will be an insightful resource for structural biologists with limited prior experience in bioinformatics tools, and for bioinformaticians who are interested in designing novel approaches for coiled-coil and its oligomeric state prediction.

  12. Optimum coil insertion speed of various coils in brain aneurysm embolization in vitro.

    PubMed

    Konishi, Yoshifumi; Takeuchi, Masataka; Fukasaku, Kazuaki

    2016-10-01

    A coil must comprise material with shape memory to perform optimal coil embolization. To achieve this, the alloy characteristics of the coil (hardness, shape, and thickness) must be understood. In this experiment, a catheter was fixed in the bright position and the movement of the coil was observed under a constant rate of insertion; the optimal insertion rate during clinical use was investigated. The first coil insertion speed was evaluated using simulated aneurysms in an in vivo arterial model. The results showed that the insertion force relates to the deployment shape of the coil, that the feedback through the force indicator using sound is very effective, and that the recorder is useful for analysis of coil embolization. The inserted coils during aneurysm embolization were able to wind uniformly within the aneurysm due to a variety of factors (guiding or micro-catheter position and kick-back phenomenon such as delivery wire). Optimal speed is achieved with proper coil design, which allows the coil to be inserted into the aneurysm. The shape and size of the aneurysm can help determine the necessary size and design of the coil that should be used during the optimal speed range. Aneurysm wall and coil characteristics are considered, along with the friction state of the coil (hardness, shape, and thickness), leading to improvements in safety during the insertion procedure at optimum speed.

  13. The Golgin Family of Coiled-Coil Tethering Proteins

    PubMed Central

    Witkos, Tomasz M.; Lowe, Martin

    2016-01-01

    The golgins are a family of predominantly coiled-coil proteins that are localized to the Golgi apparatus. Golgins are present in all eukaryotes, suggesting an evolutionary conserved function. Golgins are anchored to the Golgi membrane by their carboxy terminus and are predicted to adopt an extended conformation that projects into the surrounding cytoplasm. This arrangement is ideal for the capture or tethering of nearby membranes or cytoskeletal elements. Golgin-mediated tethering is thought to be important for vesicular traffic at the Golgi apparatus, the maintenance of Golgi architecture, as well as the positioning of the Golgi apparatus within cells. In addition to acting as tethers, some golgins can also sequester various factors at the Golgi membrane, allowing for the spatiotemporal regulation of downstream cellular functions. Although it is now established that golgins are membrane and cytoskeleton tethers, the mechanisms underlying tethering remain poorly defined. Moreover, the importance of golgin-mediated tethering in a physiological context remains to be fully explored. This review will describe our current understanding of golgin function, highlighting recent progress that has been made, and goes on to discuss outstanding questions and potential avenues for future research with regard to this family of conserved Golgi-associated proteins. PMID:26793708

  14. Force modulated conductance of artificial coiled-coil protein monolayers.

    PubMed

    Atanassov, Alexander; Hendler, Ziv; Berkovich, Inbal; Ashkenasy, Gonen; Ashkenasy, Nurit

    2013-01-01

    Studies of charge transport through proteins bridged between two electrodes have been the subject of intense research in recent years. However, the complex structure of proteins makes it difficult to elucidate transport mechanisms, and the use of simple peptide oligomers may be an over simplified model of the proteins. To bridge this structural gap, we present here studies of charge transport through artificial parallel coiled-coil proteins conducted in dry environment. Protein monolayers uniaxially oriented at an angle of ∼ 30° with respect to the surface normal were prepared. Current voltage measurements, obtained using conductive-probe atomic force microscopy, revealed the mechano-electronic behavior of the protein films. It was found that the low voltage conductance of the protein monolayer increases linearly with applied force, mainly due to increase in the tip contact area. Negligible compression of the films for loads below 26 nN allowed estimating a tunneling attenuation factor, β(0) , of 0.5-0.6 Å(-1) , which is akin to charge transfer by tunneling mechanism, despite the comparably large charge transport distance. These studies show that mechano-electronic behavior of proteins can shed light on their complex charge transport mechanisms, and on how these mechanisms depend on the detailed structure of the proteins. Such studies may provide insightful information on charge transfer in biological systems.

  15. Unusually Stable Helical Coil Allotrope of Phosphorus.

    PubMed

    Liu, Dan; Guan, Jie; Jiang, Jingwei; Tománek, David

    2016-12-14

    We have identified an unusually stable helical coil allotrope of phosphorus. Our ab initio density functional theory calculations indicate that the uncoiled, isolated straight one-dimensional chain is equally stable as a monolayer of black phosphorus dubbed phosphorene. The coiling tendency and the attraction between adjacent coil segments add an extra stabilization energy of ∼12 meV/atom to the coil allotrope, similar in value to the ∼16 meV/atom interlayer attraction in bulk black phosphorus. Thus, the helical coil structure is essentially as stable as black phosphorus, the most stable phosphorus allotrope known to date. With an optimum radius of 2.4 nm, the helical coil of phosphorus may fit well and even form inside wide carbon nanotubes.

  16. Current COIL research in Samara

    NASA Astrophysics Data System (ADS)

    Nikolayev, V. D.

    1996-02-01

    Development of the high pressure singlet oxygen generator (SOG) is a very important aspect for chemical oxygen-iodine laser (COIL). Increasing of oxygen pressure up to 30 torr and more at conserving high O2(1(Delta) ) yield and maintaining BHP temperature at minus (10 divided by 20) degrees Celsius permits us to decrease ration [H2O]/[O2] to 5% and less. In this case COIL can operate successfully without a water vapor trap. With raising the total pressure Reynolds number increases too, diminishing boundary layers in supersonic nozzles and improving pressure recovery. The weight and dimensions of the SOG and laser become reduced for the same gas flow rate. For solving these problems the jet SOG has been suggested and developed in Lebedev Physical Institute, Samara Branch. The advantages of the jet SOG consist of the following: (1) Large and controlled specific surface of contact liquid-gas provides for high mass transfer efficiency. (2) High jets velocity guarantees fast basic hydrogen peroxide (BHP) surface renovation. (3) High gas velocity in the reaction zone diminishes O2(1(Delta) ) quenching. (4) Efficient gas-liquid heat exchange eliminates the gas heating and generation water vapor due O2(1(Delta) ) quenching. (5) Counterflowing design of the jet SOG produces the best conditions for self-cleaning gas flow of droplets in the reaction zone and gives the possibility of COIL operation without droplets separator. High pressure jet SOG has some features connected with intrachannel jet formation, free space jets reconstruction, interaction jets ensemble with counter moving gas flow and drag part of gas by jets, disintegrating jets, generation and separation of droplets, heat effects, surface renovation, impoverishment BHP surface by HO2- ions, moving solution film on the reaction zone walls, etc. In this communication our current understanding of the major processes in the jet SOG is set forth. The complex gas and hydrodynamic processes with heat and mass transfer

  17. The structure of the GemC1 coiled coil and its interaction with the Geminin family of coiled-coil proteins.

    PubMed

    Caillat, Christophe; Fish, Alexander; Pefani, Dafni Eleftheria; Taraviras, Stavros; Lygerou, Zoi; Perrakis, Anastassis

    2015-11-01

    GemC1, together with Idas and Geminin, an important regulator of DNA-replication licensing and differentiation decisions, constitute a superfamily sharing a homologous central coiled-coil domain. To better understand this family of proteins, the crystal structure of a GemC1 coiled-coil domain variant engineered for better solubility was determined to 2.2 Å resolution. GemC1 shows a less typical coiled coil compared with the Geminin homodimer and the Geminin-Idas heterodimer structures. It is also shown that both in vitro and in cells GemC1 interacts with Geminin through its coiled-coil domain, forming a heterodimer that is more stable that the GemC1 homodimer. Comparative analysis of the thermal stability of all of the possible superfamily complexes, using circular dichroism to follow the unfolding of the entire helix of the coiled coil, or intrinsic tryptophan fluorescence of a unique conserved N-terminal tryptophan, shows that the unfolding of the coiled coil is likely to take place from the C-terminus towards the N-terminus. It is also shown that homodimers show a single-state unfolding, while heterodimers show a two-state unfolding, suggesting that the dimer first falls apart and the helices then unfold according to the stability of each protein. The findings argue that Geminin-family members form homodimers and heterodimers between them, and this ability is likely to be important for modulating their function in cycling and differentiating cells.

  18. Helical axis stellarator with noninterlocking planar coils

    DOEpatents

    Reiman, Allan; Boozer, Allen H.

    1987-01-01

    A helical axis stellarator using only noninterlocking planar, non-circular coils, generates magnetic fields having a magnetic well and large rotational transform with resultant large equilibrium beta.

  19. Coiled‐coils: The long and short of it

    PubMed Central

    Truebestein, Linda

    2016-01-01

    Coiled‐coils are found in proteins throughout all three kingdoms of life. Coiled‐coil domains of some proteins are almost invariant in sequence and length, betraying a structural and functional role for amino acids along the entire length of the coiled‐coil. Other coiled‐coils are divergent in sequence, but conserved in length, thereby functioning as molecular spacers. In this capacity, coiled‐coil proteins influence the architecture of organelles such as centrioles and the Golgi, as well as permit the tethering of transport vesicles. Specialized coiled‐coils, such as those found in motor proteins, are capable of propagating conformational changes along their length that regulate cargo binding and motor processivity. Coiled‐coil domains have also been identified in enzymes, where they function as molecular rulers, positioning catalytic activities at fixed distances. Finally, while coiled‐coils have been extensively discussed for their potential to nucleate and scaffold large macromolecular complexes, structural evidence to substantiate this claim is relatively scarce. PMID:27492088

  20. Compact stellarators with modular coils.

    PubMed

    Garabedian, P R

    2000-07-18

    Compact stellarator designs with modular coils and only two or three field periods are now available; these designs have both good stability and quasiaxial symmetry providing adequate transport for a magnetic fusion reactor. If the bootstrap current assumes theoretically predicted values a three field period configuration is optimal, but if that net current turns out to be lower, a device with two periods and just 12 modular coils might be better. There are also attractive designs with quasihelical symmetry and four or five periods whose properties depend less on the bootstrap current. Good performance requires that there be a satisfactory magnetic well in the vacuum field, which is a property lacking in a stellarator-tokamak hybrid that has been proposed for a proof of principle experiment. In this paper, we present an analysis of stability for these configurations that is based on a mountain pass theorem asserting that, if two solutions of the problem of magnetohydrodynamic equilibrium can be found, then there has to be an unstable solution. We compare results of our theory of equilibrium, stability, and transport with recently announced measurements from the large LHD experiment in Japan.

  1. Compact stellarators with modular coils

    PubMed Central

    Garabedian, P. R.

    2000-01-01

    Compact stellarator designs with modular coils and only two or three field periods are now available; these designs have both good stability and quasiaxial symmetry providing adequate transport for a magnetic fusion reactor. If the bootstrap current assumes theoretically predicted values a three field period configuration is optimal, but if that net current turns out to be lower, a device with two periods and just 12 modular coils might be better. There are also attractive designs with quasihelical symmetry and four or five periods whose properties depend less on the bootstrap current. Good performance requires that there be a satisfactory magnetic well in the vacuum field, which is a property lacking in a stellarator-tokamak hybrid that has been proposed for a proof of principle experiment. In this paper, we present an analysis of stability for these configurations that is based on a mountain pass theorem asserting that, if two solutions of the problem of magnetohydrodynamic equilibrium can be found, then there has to be an unstable solution. We compare results of our theory of equilibrium, stability, and transport with recently announced measurements from the large LHD experiment in Japan. PMID:10899993

  2. Coiled tubing - Operations and services

    SciTech Connect

    Rich, D.A.; Blue, T.H. )

    1993-03-01

    Sand production can severely impact well performance and profitability by damaging production equipment or plugging wellbores. Sand control in existing wells may be required because of inadequate initial completion design, recompletion to new intervals or changes in reservoir production characteristics. The most durable and reliable sand control is by conventional gravel packing, but in some cases, conventional packs may not be economic or feasible. Improvements in coiled tubing technology and reliability have resulted in better application and increased acceptance of through-tubing sand control. Concentric gravel packing and sand consolidation are being used more because of advances in equipment, services, downhole tools and fluids. Candidates for these techniques include conventional completions that begin producing sand and wells with gravel pack failures. Economical jobs have been performed successfully in several different wellbore configurations. Some initially non-gravel packed wells are now being designed for possible through-tubing gravel packing, anticipating sand production later in the completion's producing life. This paper reviews the general procedures for installing a through-tubing, washdown mechanical gravel pack using coiled tubing conveyance and placement techniques.

  3. Accommodation of structural rearrangements in the huntingtin-interacting protein 1 coiled-coil domain

    SciTech Connect

    Wilbur, Jeremy D.; Hwang, Peter K.; Brodsky, Frances M.; Fletterick, Robert J.

    2010-03-01

    Variable packing interaction related to the conformational flexibility within the huntingtin-interacting protein 1 coiled coil domain. Huntingtin-interacting protein 1 (HIP1) is an important link between the actin cytoskeleton and clathrin-mediated endocytosis machinery. HIP1 has also been implicated in the pathogenesis of Huntington’s disease. The binding of HIP1 to actin is regulated through an interaction with clathrin light chain. Clathrin light chain binds to a flexible coiled-coil domain in HIP1 and induces a compact state that is refractory to actin binding. To understand the mechanism of this conformational regulation, a high-resolution crystal structure of a stable fragment from the HIP1 coiled-coil domain was determined. The flexibility of the HIP1 coiled-coil region was evident from its variation from a previously determined structure of a similar region. A hydrogen-bond network and changes in coiled-coil monomer interaction suggest that the HIP1 coiled-coil domain is uniquely suited to allow conformational flexibility.

  4. Visualization of an unstable coiled coil from the scallop myosin rod.

    PubMed

    Li, Yu; Brown, Jerry H; Reshetnikova, Ludmilla; Blazsek, Antal; Farkas, László; Nyitray, László; Cohen, Carolyn

    2003-07-17

    Alpha-helical coiled coils in muscle exemplify simplicity and economy of protein design: small variations in sequence lead to remarkable diversity in cellular functions. Myosin II is the key protein in muscle contraction, and the molecule's two-chain alpha-helical coiled-coil rod region--towards the carboxy terminus of the heavy chain--has unusual structural and dynamic features. The amino-terminal subfragment-2 (S2) domains of the rods can swing out from the thick filament backbone at a hinge in the coiled coil, allowing the two myosin 'heads' and their motor domains to interact with actin and generate tension. Most of the S2 rod appears to be a flexible coiled coil, but studies suggest that the structure at the N-terminal region is unstable, and unwinding or bending of the alpha-helices near the head-rod junction seems necessary for many of myosin's functional properties. Here we show the physical basis of a particularly weak coiled-coil segment by determining the 2.5-A-resolution crystal structure of a leucine-zipper-stabilized fragment of the scallop striated-muscle myosin rod adjacent to the head-rod junction. The N-terminal 14 residues are poorly ordered; the rest of the S2 segment forms a flexible coiled coil with poorly packed core residues. The unusual absence of interhelical salt bridges here exposes apolar core atoms to solvent.

  5. Statistical analysis of intrahelical ionic interactions in alpha-helices and coiled coils.

    PubMed

    Meier, Markus; Burkhard, Peter

    2006-08-01

    There are many controversies concerning whether ionic interactions in alpha-helices and coiled coils actually contribute to the stabilisation and formation of these structures. Here we used a statistical approach to probe this question. We extracted unique alpha-helical and coiled coil structures from the protein database and analysed the ionic interactions between positively and negatively charged residues. The ionic interactions were categorized according to the type, spacing and order of the residues involved. Separate datasets were produced depending on the number of alpha-helices in the coiled coils and the mutual orientation of the helices. We compared the frequency of residue configurations able to form ionic interactions with their probability to form the interaction. We found a correlation between the two variables in alpha-helices, antiparallel two-stranded coiled coils and parallel two-stranded coiled coils. This indicates that some ionic interactions are indeed important for the formation and stabilisation of alpha-helices and coiled coils. We concluded that the configurations, which have simultaneously a large probability to form the ionic interaction and a frequent occurrence, are those, which have the most stabilising effect. These are the 4RE, 3ER and 4ER interactions.

  6. Design of the coolant system for the Large Coil Test Facility pulse coils

    SciTech Connect

    Bridgman, C.; Ryan, T.L.

    1983-01-01

    The pulse coils will be a part of the Large Coil Test Facility in Oak Ridge, Tennessee, which is designed to test six large tokamak-type superconducting coils. The pulse coil set consists of two resistive coaxial solenoid coils, mounted so that their magnetic axis is perpendicular to the toroidal field lines of the test coil. The pulse coils provide transient vertical fields at test coil locations to simulate the pulsed vertical fields present in tokamak devices. The pulse coils are designed to be pulsed for 30 s every 150 s, which results in a Joule heating of 116 kW per coil. In order to provide this capability, the pulse coil coolant system is required to deliver 6.3 L/s (100 gpm) of subcooled liquid nitrogen at 10-atm absolute pressure. The coolant system can also cool down each pulse coil from room temperature to liquid nitrogen temperature. This paper provides details of the pumping and heat exchange equipment designed for the coolant system and of the associated instrumentation and controls.

  7. Characterization of Coupled Coil in Seawater for Wireless Power Transfer

    DTIC Science & Technology

    2013-09-01

    9 8. Quality factor of the coils in air, seawater, and atop a ferrite plate...coils (‘blue’). quality factor of the coils in air, seawater, and atop a ferrite plate...was designed to be inserted inside the transmit coil, as shown in Figure 5(b). The receive coil was filled with a ferrite powder to increase its

  8. Gas-phase IR spectra of intact [alpha]-helical coiled coil protein complexes

    NASA Astrophysics Data System (ADS)

    Pagel, Kevin; Kupser, Peter; Bierau, Frauke; Polfer, Nicolas C.; Steill, Jeffrey D.; Oomens, Jos; Meijer, Gerard; Koksch, Beate; von Helden, Gert

    2009-06-01

    Electrospray ionization (ESI) is the softest ionization method that is currently available and it is widely accepted, that ESI generated ions of proteins and protein assemblies at certain conditions retain characteristic aspects of their solution-state conformation. ESI mass spectrometry (MS) therefore evolved as a useful tool to obtain information on composition, stoichiometry, and dynamics of non-covalently associated protein complexes. While tertiary structure information of proteins can be obtained from ion mobility spectrometry (IMS), only a few techniques yield direct information on the secondary structure of gas-phase peptides and proteins. We present here the mid-IR spectroscopic secondary structural analysis of three de novo designed [alpha]-helical coiled coil model peptides and their non-covalently associated complexes in the gas-phase. The conformational stability of such coiled coil peptides in solution is primarily driven by aggregation. Isolated monomers usually remain unfolded. Two of the investigated peptides were designed to assemble into stable [alpha]-helical complexes in acidic solution, while the third one remains monomeric and unfolded at these conditions. Monomer ions of all three peptides show comparable photodissociation IR spectra and therefore suggest an unfolded conformation in the gas phase. In contrast, considerable CO stretch (amide-I) and N-H bend (amide-II) band shifts have been observed for the dimers which is consistent with an elevated H-bond content. These findings provide evidence that at least a fraction of the condensed phase [alpha]-helical structure is retained in the gas-phase coiled coil complexes.

  9. Pharmacological interference with protein-protein interactions mediated by coiled-coil motifs.

    PubMed

    Strauss, H M; Keller, S

    2008-01-01

    Coiled coils are bundles of intertwined alpha-helices that provide protein-protein interaction sites for the dynamic assembly and disassembly of protein complexes. The coiled-coil motif combines structural versatility and adaptability with mechanical strength and specificity. Multimeric proteins that rely on coiled-coil interactions are structurally and functionally very diverse, ranging from simple homodimeric transcription factors to elaborate heteromultimeric scaffolding clusters. Several coiled-coil-bearing proteins are of outstanding pharmacological importance, most notably SNARE proteins involved in vesicular trafficking of neurotransmitters and viral fusion proteins. Together with their crucial roles in many physiological and pathological processes, the structural simplicity and reversible nature of coiled-coil associations render them a promising target for pharmacological interference, as successfully exemplified by botulinum toxins and viral fusion inhibitors. The alpha-helical coiled coil is a ubiquitous protein domain that mediates highly specific homo- and heteromeric protein-protein interactions among a wide range of proteins. The coiled-coil motif was first proposed by Crick on the basis of X-ray diffraction data on alpha-keratin more than 50 years ago (Crick 1952, 1953) and nowadays belongs to the best-characterized protein interaction modules. By definition, a coiled coil is an oligomeric protein assembly consisting of several right-handed amphipathic alpha-helices that wind around each other into a superhelix (or a supercoil) in which the hydrophobic surfaces of the constituent helices are in continuous contact, forming a hydrophobic core. Both homomeric and heteromeric coiled coils with different stoichiometries are possible, and the helices can be aligned in either a parallel or an antiparallel topology (Harbury et al. 1993, 1994). Stoichiometry and topology are governed by the primary structure, that is, the sequence of the polypeptide chains

  10. Coiling and Folding of Viscoelastic Jets

    NASA Astrophysics Data System (ADS)

    Majmudar, Trushant; Varagnat, Matthieu; McKinley, Gareth

    2007-11-01

    The study of fluid jets impacting on a flat surface has industrial applications in many areas, including processing of foods and consumer goods, bottle filling, and polymer melt processing. Previous studies have focused primarily on purely viscous, Newtonian fluids, which exhibit a number of different dynamical regimes including dripping, steady jetting, folding, and steady coiling. Here we add another dimension to the problem by focusing on mobile (low viscosity) viscoelastic fluids, with the study of two wormlike-micellar fluids, a cetylpyridinum-salicylic acid salt (CPyCl/NaSal) solution, and an industrially relevant shampoo base. We investigate the effects of viscosity and elasticity on the dynamics of axi-symmetric jets. The viscoelasticity of the fluids is systematically controlled by varying the concentration of salt counterions. Experimental methods include shear and extensional rheology measurements to characterize the fluids, and high-speed digital video imaging. In addition to the regimes observed in purely viscous systems, we also find a novel regime in which the elastic jet buckles and folds on itself, and alternates between coiling and folding behavior. We suggest phase diagrams and scaling laws for the coiling and folding frequencies through a systematic exploration of the experimental parameter space (height of fall, imposed flow rate, elasticity of the solution).

  11. Overexpression of Transforming Acidic Coiled Coil‑Containing Protein 3 Reflects Malignant Characteristics and Poor Prognosis of Glioma

    PubMed Central

    Sun, Ying; Tian, Yu; Wang, Guang-Zhi; Zhao, Shi-Hong; Han, Bo; Li, Yong-Li; Jiang, Chuan-Lu

    2017-01-01

    Gliomas are malignant primary brain tumors with poor prognosis. Recently, research was indicative of a tight connection between tumor malignancy and genetic alterations. Here, we propose an oncogenic implication of transforming acidic coiled-coil-containing protein 3 (TACC3) in gliomas. By comprehensively analyzing the Chinese glioma genome atlas (CGGA) and publicly available data, we demonstrated that TACC3 were overexpressed along with glioma grade and served as an independent negative prognostic biomarker for glioma patients. Functions’ annotations and gene sets’ enrichment analysis suggested that TACC3 may participate in cell cycle, DNA repair, epithelium-mesenchymal transition and other tumor-related biological processes and molecular pathways. Patients with high TACC3 expression showed CD133+ stem cell properties, glioma plasticity and shorter overall survival time under chemo-/radio-therapy. Additionally, a TACC3 associated the miRNA-mRNA network was constructed based on in silico prediction and expression pattern, which provide a foundation for further detection of TACC3-miRNA-mRNA axis function. Collectively, our observations identify TACC3 as an oncogene of tumor malignancy, as well as a prognostic and motoring biomarker for glioma patients. PMID:28273854

  12. Peptidyl Materials Formed Through Click Chemistry Enhanced Coiled-Coil Interactions

    NASA Astrophysics Data System (ADS)

    Koehler, Kenneth

    2014-03-01

    Biologically derived materials offer a level of sophistication synthetically fabricated materials have only attempted to mimic. This level of complexity may be found in materials such as peptides. Implementing new theory and modeling, peptides with the propensity to form coiled-coil (CC) bundles were designed and synthesized. Through the use of this de novo approach, modeling allowed prediction of the feasibility to include non-natural amino acids conducive to click chemistry into the peptide. Amino acids showcasing thiol or alkyne functionalities were considered owing to the ability of these moieties to participate in the thiol-ene and copper click reactions respectively. Once synthesized, the peptides decorated with these clickable motifs were placed in solution and allowed to self-assemble into CC's. CD spectroscopy and DLS experiments confirmed the formation and assembly of CC's. Click reactions were then incited to link the CC assemblies together and form a network with predictable dimensionality and pore size between CC bundles. To incite network formation, click reactions between CC side chain residues and suitably functionalized crosslinkers were implemented. The linking of coiled-coils and material formation were assessed using DLS and TEM.

  13. Innovative applications stimulate coiled tubing development

    SciTech Connect

    Sas-Jaworsky, A. II; Bell, S.

    1996-06-01

    Coiled tubing (CT) is increasingly becoming a viable option to many conventional well operations worldwide. Advanced technology, new equipment and recent field applications have shown CT to be a lower-cost, reliable and effective tool for drilling and recompleting certain wells. Seven example applications from two recent coiled tubing technical conferences are described.

  14. Operator coil monitoring Acceptance Test Procedure

    SciTech Connect

    Erhart, M.F.

    1995-05-16

    The readiness of the Data Acquisition and Control System (DACS) to provide monitoring and control of the Programmable Logic Controller (PLC) abort coils from the Master and RSS stations will be systematically tested during performance of this procedure. It should be noted that these are not physical abort coils but software coils controlled by the software`s ladder logic. The readiness of the DACS to properly interface with the ENRAF wire level gauge installed in the SY-101 storage tank will also be tested. During this test, a verification of all abort coil indications will be conducted at the DACS Development Facility in the 306E Building by injecting an input signal for each DACS sensor that has an associated abort coil until the abort coil actuates, and then ensuring that the status of the abort coil indicated at the Master and RSS stations is correct. Each abort coil will also be tested to ensure that the ``ENABLE`` and ``DISABLE`` controls from the Master and RSS stations function correctly, and only with the use of proper passwords.

  15. Magnetic Fields at the Center of Coils

    ERIC Educational Resources Information Center

    Binder, Philippe; Hui, Kaleonui; Goldman, Jesse

    2014-01-01

    In this note we synthesize and extend expressions for the magnetic field at the center of very short and very long current-carrying coils. Elementary physics textbooks present the following equation for the magnetic field inside a very long current-carrying coil (solenoid): B[subscript sol] = µ[subscript 0] (N/L) I, (1) where I is the current, N…

  16. Helical axis stellarator with noninterlocking planar coils

    DOEpatents

    Reiman, A.; Boozer, A.H.

    1984-03-06

    The present invention generates stellarator fields having favorable properties (magnetic well and large rotational transform) by a simple coil system consisting only of unlinked planar non-circular coils. At large rotational transform toroidal effects on magnetic well and rotational transform are small and can be ignored. We do so herein, specializing in straight helical systems.

  17. Evidence-based pathology: umbilical cord coiling.

    PubMed

    Khong, T Y

    2010-12-01

    The generation of a pathology test result must be based on criteria that are proven to be acceptably reproducible and clinically relevant to be evidence-based. This review de-constructs the umbilical cord coiling index to illustrate how it can stray from being evidence-based. Publications related to umbilical cord coiling were retrieved and analysed with regard to how the umbilical coiling index was calculated, abnormal coiling was defined and reference ranges were constructed. Errors and other influences that can occur with the measurement of the length of the umbilical cord or of the number of coils can compromise the generation of the coiling index. Definitions of abnormal coiling are not consistent in the literature. Reference ranges defining hypocoiling or hypercoiling have not taken those potential errors or the possible effect of gestational age into account. Even the way numerical test results in anatomical pathology are generated, as illustrated by the umbilical coiling index, warrants a critical analysis into its evidence base to ensure that they are reproducible or free from errors.

  18. 49 CFR 236.730 - Coil, receiver.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 49 Transportation 4 2010-10-01 2010-10-01 false Coil, receiver. 236.730 Section 236.730 Transportation Other Regulations Relating to Transportation (Continued) FEDERAL RAILROAD ADMINISTRATION... Coil, receiver. Concentric layers of insulated wire wound around the core of a receiver of an...

  19. Precise Fabrication of Electromagnetic-Levitation Coils

    NASA Technical Reports Server (NTRS)

    Ethridge, E.; Curreri, P.; Theiss, J.; Abbaschian, G.

    1985-01-01

    Winding copper tubing on jig ensures reproducible performance. Sequence of steps insures consistent fabrication of levitation-and-melting coils. New method enables technician to produce eight coils per day, 95 percent of them acceptable. Method employs precise step-by-step procedure on specially designed wrapping and winding jig.

  20. Optimal Coil Orientation for Transcranial Magnetic Stimulation

    PubMed Central

    Richter, Lars; Neumann, Gunnar; Oung, Stephen; Schweikard, Achim; Trillenberg, Peter

    2013-01-01

    We study the impact of coil orientation on the motor threshold (MT) and present an optimal coil orientation for stimulation of the foot. The result can be compared to results of models that predict this orientation from electrodynamic properties of the media in the skull and from orientations of cells, respectively. We used a robotized TMS system for precise coil placement and recorded motor-evoked potentials with surface electrodes on the abductor hallucis muscle of the right foot in 8 healthy control subjects. First, we performed a hot-spot search in standard (lateral) orientation and then rotated the coil in steps of 10° or 20°. At each step we estimated the MT. For navigated stimulation and for correlation with the underlying anatomy a structural MRI scan was obtained. Optimal coil orientation was 33.1±18.3° anteriorly in relation to the standard lateral orientation. In this orientation the threshold was 54±18% in units of maximum stimulator output. There was a significant difference of 8.0±5.9% between the MTs at optimal and at standard orientation. The optimal coil orientations were significantly correlated with the direction perpendicular to the postcentral gyrus (). Robotized TMS facilitates sufficiently precise coil positioning and orientation to study even small variations of the MT with coil orientation. The deviations from standard orientation are more closely matched by models based on field propagation in media than by models based on orientations of pyramidal cells. PMID:23593200

  1. Operator coil monitoring acceptance test procedure

    SciTech Connect

    Erhart, M.F.

    1995-06-05

    The readiness of the Data Acquisition and Control System (DACS) to provide monitoring and control of the Programmable Logic Controller (PLC) abort coils from the Master and RSS stations will be systematically tested during performance of this procedure. It should be noted that these are not physical abort coils but software coils controlled by the software`s ladder logic. The readiness of the DACS to properly interface with the ENRAF wire level gauge installed in the SY101 storage tank will also be tested. During this test, a verification of all abort coil indications will be conducted at the DACS Development Facility in the 306E Building by injecting an input signal for each DACS sensor that has an associated abort coil until the abort coil actuates, and then ensuring that the status of the abort coil indicated at the Master and RSS stations correct. Each abort coil will also be tested to ensure that the ``ENABLE`` and ``DISABLE`` controls from the Master and RSS stations function correctly, and only with the use of proper passwords.

  2. Various factors affect coiled tubing limits

    SciTech Connect

    Yang, Y.S.

    1996-01-15

    Safety and reliability remain the primary concerns in coiled tubing operations. Factors affecting safety and reliability include corrosion, flexural bending, internal (or external) pressure and tension (or compression), and mechanical damage due to improper use. Such limits as coiled tubing fatigue, collapse, and buckling need to be understood to avoid disaster. With increased use of coiled tubing, operators will gain more experience. But at the same time, with further research and development of coiled tubing, the manufacturing quality will be improved and fatigue, collapse, and buckling models will become more mature, and eventually standard specifications will be available. This paper reviews the uses of coiled tubing and current research on mechanical behavior of said tubing. It also discusses several models used to help predict fatigue and failure levels.

  3. Magnetron surface coil for brain MR imaging.

    PubMed

    Rodríguez, Alfredo O

    2006-08-01

    A resonator surface coil was developed for magnetic resonance imaging of the brain and tested on a clinical imager. This resonator design was based on the cavity magnetron with an 8 slot-and-hole configuration. High-resolution brain images were obtained from a water-filled phantom and from a healthy volunteer brain. To compare coil performance, SNR-vs.-depth plots were computed for a single-loop coil and the magnetron prototype from phantom images. These experimentally acquired profiles show an important improvement in SNR. Thus, the magnetron surface coil can generate brain images with a high resolution and penetration capacity. The high sensitivity of this coil makes it a good candidate to be used in multicoil imaging sequences.

  4. Startup of Large Coil Test Facility

    SciTech Connect

    Haubenreich, P.N.; Bohanan, R.E.; Fietz, W.A.; Luton, J.N.; May, J.R.

    1984-01-01

    The Large Coil Test Facility (LCTF) is being used to test superconducting toroidal field coils about one-third the size of those for INTOR. Eventually, six different coils from four countries will be tested. Operations began in 1983 with acceptance testing of the helium refrigerator/liquefier system. Comprehensive shakedown of the facility and tests with the first three coils (from Japan, the United States, and Switzerland) were successfully accomplished in the summer of 1984. Currents up to 10,200 A and fields up to 6.4 T were reached. Data were obtained on performance of refrigerator, helium distribution, power supplies, controls, and data acquisition systems and on the acoustic emission, voltages, currents, and mechanical strains during charging and discharging the coils.

  5. Rod-Coil Block Polyimide Copolymers

    NASA Technical Reports Server (NTRS)

    Meador, Mary Ann B. (Inventor); Kinder, James D. (Inventor)

    2005-01-01

    This invention is a series of rod-coil block polyimide copolymers that are easy to fabricate into mechanically resilient films with acceptable ionic or protonic conductivity at a variety of temperatures. The copolymers consist of short-rigid polyimide rod segments alternating with polyether coil segments. The rods and coil segments can be linear, branched or mixtures of linear and branched segments. The highly incompatible rods and coil segments phase separate, providing nanoscale channels for ion conduction. The polyimide segments provide dimensional and mechanical stability and can be functionalized in a number of ways to provide specialized functions for a given application. These rod-coil black polyimide copolymers are particularly useful in the preparation of ion conductive membranes for use in the manufacture of fuel cells and lithium based polymer batteries.

  6. Coiled tubing; Operations and services

    SciTech Connect

    Brown, P.T.; Wimberly, R.D.

    1992-10-01

    Oil and gas wells that flow on initial completion eventually reach a condition of liquid loading that kills the wells. This results form declining reservoir pressure, decreased gas volume (velocity), increased water production and other factors that cause liquids to accumulate at the bottom of the well and exert back pressure on the formation. This restricts or in some cases prevents fluid entry into the wellbore form the formation. Flowing production can be restored or increased by reducing surface backpressure, well bore stimulation, pressure maintenance or by installing a string of smaller diameter tubing. This paper reports on installation (hanging off) of a concentric string of coiled tubing inside existing production tubing which is an economically viable, safe, convenient and effective alterative for returning some of these liquid loaded )logged-up) wells to flowing status.

  7. Detection of alpha-helical coiled-coil dimer formation by spin-labeled synthetic peptides: a model parallel coiled-coil peptide and the antiparallel coiled coil formed by a replica of the ProP C-terminus.

    PubMed

    Hillar, Alexander; Tripet, Brian; Zoetewey, David; Wood, Janet M; Hodges, Robert S; Boggs, Joan M

    2003-12-30

    Electron paramagnetic resonance spectroscopy was used to determine relative peptide orientation within homodimeric, alpha-helical coiled-coil structures. Introduction of cysteine (Cys) residues into peptides/proteins for spin labeling allows detection of their oligomerization from exchange broadening or dipolar interactions between residues within 25 A of each other. Two synthetic peptides containing Cys substitutions were used: a 35-residue model peptide and the 30-residue ProP peptide. The model peptide is known to form a stable, parallel homodimeric coiled coil, which is partially destabilized by Cys substitutions at heptad a and d positions (peptides C30a and C33d). The ProP peptide, a 30-residue synthetic peptide, corresponds to residues 468-497 of osmoregulatory transporter ProP from Escherichia coli. It forms a relatively unstable, homodimeric coiled coil that is predicted to be antiparallel in orientation. Cys was introduced in heptad g positions of the ProP peptide, near the N-terminus (K473C, creating peptide C473g) or closer to the center of the sequence (E480C, creating peptide C480g). In contrast to the destabilizing effect of Cys substitution at the core heptad a or d positions of model peptides C30a and C33d, circular dichroism spectroscopy showed that Cys substitutions at the heptad g positions of the ProP peptide had little or no effect on coiled-coil stability. Thermal denaturation analysis showed that spin labeling increased the stability of the coiled coil for all peptides. Strong exchange broadening was detected for both C30a and C33d, in agreement with a parallel structure. EPR spectra of C480g had a large hyperfine splitting of about 90 G, indicative of strong dipole-dipole interactions and a distance between spin-labeled residues of less than 9 A. Spin-spin interactions were much weaker for C473g. These results supported the hypothesis that the ProP peptide primarily formed an antiparallel coiled coil, since formation of a parallel dimer

  8. A study on geometry effect of transmission coil for micro size magnetic induction coil

    NASA Astrophysics Data System (ADS)

    Lee, Kyung Hwa; Jun, Byoung Ok; Kim, Seunguk; Lee, Gwang Jun; Ryu, Mingyu; Choi, Ji-Woong; Jang, Jae Eun

    2016-05-01

    The effects of transmission (Tx) coil structure have been studied for micro-size magnetic induction coil. The size of the receiving (Rx) coil should be shrunk to the micrometer level for the various new applications such as micro-robot and wireless body implanted devices. In case of the macro-scale magnetic induction coil, the power transmission efficiency is generally considered to be higher as the inductance of the transmission coil became larger; however, the large size difference between macro-size Tx coil and micro-size Rx coil can decrease the power transmission efficiency due to the difference of resonance frequency. Here, we study a correlation of the power transmission with the size and distance between the macro-size Tx and micro-size Rx coils using magnetic induction technique. The maximum power efficiency was 0.28/0.23/0.13/0.12% at the distance of 0.3/1/3/5 cm between Rx and Tx coil. In addition, more efficient wireless power transferring method is suggested with a floating coil for the body implantable devices. The voltage output increased up to 5.4 mV than the original one Tx coil system. The results demonstrated the foundational wireless power transferring system with enhanced power efficiency.

  9. Intra-coil interactions in split gradient coils in a hybrid MRI-LINAC system

    NASA Astrophysics Data System (ADS)

    Tang, Fangfang; Freschi, Fabio; Sanchez Lopez, Hector; Repetto, Maurizio; Liu, Feng; Crozier, Stuart

    2016-04-01

    An MRI-LINAC system combines a magnetic resonance imaging (MRI) system with a medical linear accelerator (LINAC) to provide image-guided radiotherapy for targeting tumors in real-time. In an MRI-LINAC system, a set of split gradient coils is employed to produce orthogonal gradient fields for spatial signal encoding. Owing to this unconventional gradient configuration, eddy currents induced by switching gradient coils on and off may be of particular concern. It is expected that strong intra-coil interactions in the set will be present due to the constrained return paths, leading to potential degradation of the gradient field linearity and image distortion. In this study, a series of gradient coils with different track widths have been designed and analyzed to investigate the electromagnetic interactions between coils in a split gradient set. A driving current, with frequencies from 100 Hz to 10 kHz, was applied to study the inductive coupling effects with respect to conductor geometry and operating frequency. It was found that the eddy currents induced in the un-energized coils (hereby-referred to as passive coils) positively correlated with track width and frequency. The magnetic field induced by the eddy currents in the passive coils with wide tracks was several times larger than that induced by eddy currents in the cold shield of cryostat. The power loss in the passive coils increased with the track width. Therefore, intra-coil interactions should be included in the coil design and analysis process.

  10. Mosquito coil emissions and health implications.

    PubMed

    Liu, Weili; Zhang, Junfeng; Hashim, Jamal H; Jalaludin, Juliana; Hashim, Zailina; Goldstein, Bernard D

    2003-09-01

    Burning mosquito coils indoors generates smoke that can control mosquitoes effectively. This practice is currently used in numerous households in Asia, Africa, and South America. However, the smoke may contain pollutants of health concern. We conducted the present study to characterize the emissions from four common brands of mosquito coils from China and two common brands from Malaysia. We used mass balance equations to determine emission rates of fine particles (particulate matter < 2.5 microm in diameter; PM(2.5)), polycyclic aromatic hydrocarbons (PAHs), aldehydes, and ketones. Having applied these measured emission rates to predict indoor concentrations under realistic room conditions, we found that pollutant concentrations resulting from burning mosquito coils could substantially exceed health-based air quality standards or guidelines. Under the same combustion conditions, the tested Malaysian mosquito coils generated more measured pollutants than did the tested Chinese mosquito coils. We also identified a large suite of volatile organic compounds, including carcinogens and suspected carcinogens, in the coil smoke. In a set of experiments conducted in a room, we examined the size distribution of particulate matter contained in the coil smoke and found that the particles were ultrafine and fine. The findings from the present study suggest that exposure to the smoke of mosquito coils similar to the tested ones can pose significant acute and chronic health risks. For example, burning one mosquito coil would release the same amount of PM(2.5) mass as burning 75-137 cigarettes. The emission of formaldehyde from burning one coil can be as high as that released from burning 51 cigarettes.

  11. Mosquito coil emissions and health implications.

    PubMed Central

    Liu, Weili; Zhang, Junfeng; Hashim, Jamal H; Jalaludin, Juliana; Hashim, Zailina; Goldstein, Bernard D

    2003-01-01

    Burning mosquito coils indoors generates smoke that can control mosquitoes effectively. This practice is currently used in numerous households in Asia, Africa, and South America. However, the smoke may contain pollutants of health concern. We conducted the present study to characterize the emissions from four common brands of mosquito coils from China and two common brands from Malaysia. We used mass balance equations to determine emission rates of fine particles (particulate matter < 2.5 microm in diameter; PM(2.5)), polycyclic aromatic hydrocarbons (PAHs), aldehydes, and ketones. Having applied these measured emission rates to predict indoor concentrations under realistic room conditions, we found that pollutant concentrations resulting from burning mosquito coils could substantially exceed health-based air quality standards or guidelines. Under the same combustion conditions, the tested Malaysian mosquito coils generated more measured pollutants than did the tested Chinese mosquito coils. We also identified a large suite of volatile organic compounds, including carcinogens and suspected carcinogens, in the coil smoke. In a set of experiments conducted in a room, we examined the size distribution of particulate matter contained in the coil smoke and found that the particles were ultrafine and fine. The findings from the present study suggest that exposure to the smoke of mosquito coils similar to the tested ones can pose significant acute and chronic health risks. For example, burning one mosquito coil would release the same amount of PM(2.5) mass as burning 75-137 cigarettes. The emission of formaldehyde from burning one coil can be as high as that released from burning 51 cigarettes. PMID:12948883

  12. Hybrid hydrogels assembled from synthetic polymers and coiled-coil protein domains.

    PubMed

    Wang, C; Stewart, R J; Kopecek, J

    1999-02-04

    Stimuli-sensitive polymer hydrogels, which swell or shrink in response to changes in the environmental conditions, have been extensively investigated and used as 'smart' biomaterials and drug-delivery systems. Most of these responsive hydrogels are prepared from a limited number of synthetic polymers and their derivatives, such as copolymers of (meth)acrylic acid, acrylamide and N-isopropyl acrylamide. Water-soluble synthetic polymers have also been crosslinked with molecules of biological origin, such as oligopeptides and oligodeoxyribonucleotides, or with intact native proteins. Very often there are several factors influencing the relationship between structure and properties in these systems, making it difficult to engineer hydrogels with specified responses to particular stimuli. Here we report a hybrid hydrogel system assembled from water-soluble synthetic polymers and a well-defined protein-folding motif, the coiled coil. These hydrogels undergo temperature-induced collapse owing to the cooperative conformational transition of the coiled-coil protein domain. This system shows that well-characterized water-soluble synthetic polymers can be combined with well-defined folding motifs of proteins in hydrogels with engineered volume-change properties.

  13. N@a and N@d: Oligomer and Partner Specification by Asparagine in Coiled-Coil Interfaces.

    PubMed

    Fletcher, Jordan M; Bartlett, Gail J; Boyle, Aimee L; Danon, Jonathan J; Rush, Laura E; Lupas, Andrei N; Woolfson, Derek N

    2017-02-17

    The α-helical coiled coil is one of the best-studied protein-protein interaction motifs. As a result, sequence-to-structure relationships are available for the prediction of natural coiled-coil sequences and the de novo design of new ones. However, coiled coils adopt a wide range of oligomeric states and topologies, and our understanding of the specification of these and the discrimination between them remains incomplete. Gaps in our knowledge assume more importance as coiled coils are used increasingly to construct biomimetic systems of higher complexity; for this, coiled-coil components need to be robust, orthogonal, and transferable between contexts. Here, we explore how the polar side chain asparagine (Asn, N) is tolerated within otherwise hydrophobic helix-helix interfaces of coiled coils. The long-held view is that Asn placed at certain sites of the coiled-coil sequence repeat selects one oligomer state over others, which is rationalized by the ability of the side chain to make hydrogen bonds, or interactions with chelated ions within the coiled-coil interior of the favored state. We test this with experiments on de novo peptide sequences traditionally considered as directing parallel dimers and trimers, and more widely through bioinformatics analysis of natural coiled-coil sequences and structures. We find that when located centrally, rather than near the termini of such coiled-coil sequences, Asn does exert the anticipated oligomer-specifying influence. However, outside of these bounds, Asn is observed less frequently in the natural sequences, and the synthetic peptides are hyperthermostable and lose oligomer-state specificity. These findings highlight that not all regions of coiled-coil repeat sequences are equivalent, and that care is needed when designing coiled-coil interfaces.

  14. Spaced-based search coil magnetometers

    NASA Astrophysics Data System (ADS)

    Hospodarsky, George B.

    2016-12-01

    Search coil magnetometers are one of the primary tools used to study the magnetic component of low-frequency electromagnetic waves in space. Their relatively small size, mass, and power consumption, coupled with a good frequency range and sensitivity, make them ideal for spaceflight applications. The basic design of a search coil magnetometer consists of many thousands of turns of wire wound on a high permeability core. When a time-varying magnetic field passes through the coil, a time-varying voltage is induced due to Faraday's law of magnetic induction. The output of the coil is usually attached to a preamplifier, which amplifies the induced voltage and conditions the signal for transmission to the main electronics (usually a low-frequency radio receiver). Search coil magnetometers are usually used in conjunction with electric field antenna to measure electromagnetic plasma waves in the frequency range of a few hertz to a few tens of kilohertzs. Search coil magnetometers are used to determine the properties of waves, such as comparing the relative electric and magnetic field amplitudes of the waves, or to investigate wave propagation parameters, such as Poynting flux and wave normal vectors. On a spinning spacecraft, they are also sometimes used to determine the background magnetic field. This paper presents some of the basic design criteria of search coil magnetometers and discusses design characteristics of sensors flown on a number of spacecraft.

  15. Correcting coils in end magnets of accelerators

    NASA Astrophysics Data System (ADS)

    Kassab, L. R.; Gouffon, P.

    1998-05-01

    We present an empirical investigation of the correcting coils behavior used to homogenize the field distribution of the race-track microtron accelerator end magnets. These end magnets belong to the second stage of the 30.0 MeV cw electron accelerator under construction at IFUSP, the race-track microtron booster, in which the beam energy is raised from 1.97 to 5.1 MeV. The correcting coils are attached to the pole faces and are based on the inhomogeneities of the magnetic field measured. The performance of these coils, when operating the end magnets with currents that differ by +/-10% from the one used in the mappings that originated the coils copper leads, is presented. For one of the magnets, adjusting conveniently the current of the correcting coils makes it possible to homogenize field distributions of different intensities, once their shapes are practically identical to those that originated the coils. For the other one, the shapes are changed and the coils are less efficient. This is related to intrinsic factors that determine the inhomogeneities. However, we obtained uniformity of 0.001% in both cases.

  16. Routine phasing of coiled-coil protein crystal structures with AMPLE

    PubMed Central

    Thomas, Jens M. H.; Keegan, Ronan M.; Bibby, Jaclyn; Winn, Martyn D.; Mayans, Olga; Rigden, Daniel J.

    2015-01-01

    Coiled-coil protein folds are among the most abundant in nature. These folds consist of long wound α-helices and are architecturally simple, but paradoxically their crystallographic structures are notoriously difficult to solve with molecular-replacement techniques. The program AMPLE can solve crystal structures by molecular replacement using ab initio search models in the absence of an existent homologous protein structure. AMPLE has been benchmarked on a large and diverse test set of coiled-coil crystal structures and has been found to solve 80% of all cases. Successes included structures with chain lengths of up to 253 residues and resolutions down to 2.9 Å, considerably extending the limits on size and resolution that are typically tractable by ab initio methodologies. The structures of two macromolecular complexes, one including DNA, were also successfully solved using their coiled-coil components. It is demonstrated that both the ab initio modelling and the use of ensemble search models contribute to the success of AMPLE by comparison with phasing attempts using single structures or ideal polyalanine helices. These successes suggest that molecular replacement with AMPLE should be the method of choice for the crystallo­graphic elucidation of a coiled-coil structure. Furthermore, AMPLE may be able to exploit the presence of a coiled coil in a complex to provide a convenient route for phasing. PMID:25866657

  17. Phase reconstruction from multiple coil data using a virtual reference coil

    PubMed Central

    Parker, Dennis L.; Payne, Allison; Todd, Nick; Hadley, J. Rock

    2013-01-01

    Purpose This paper develops a method to obtain optimal estimates of absolute magnetization phase from multiple-coil MRI data. Methods The element-specific phases of a multi-element receiver coil array are accounted for by using the phase of a real or virtual reference coil that is sensitive over the entire imaged volume. The virtual-reference coil is generated as a weighted combination of measurements from all receiver coils. The phase-corrected multiple coil complex images are combined using the inverse covariance matrix. These methods are tested on images of an agar phantom, an in vivo breast, and an anesthetized rabbit obtained using combinations of four, nine, and three receiver channels, respectively. Results The four- and three- channel acquisitions require formation of a virtual-reference receiver coil while one channel of the nine-channel receive array has a sensitivity profile covering the entire imaged volume. Referencing to a real or virtual coil gives receiver phases that are essentially identical except for the individual receiver channel noise. The resulting combined images, which account for receiver channel noise covariance, show the expected reduction in phase variance. Conclusions The proposed virtual reference coil method determines a phase distribution for each coil from which an optimal phase map can be obtained. PMID:24006172

  18. Crystal Structure of the Central Coiled-Coil Domain from Human Liprin-[beta]2

    SciTech Connect

    Stafford, Ryan L.; Tang, Ming-Yun; Sawaya, Michael R.; Phillips, Martin L.; Bowie, James U.

    2012-02-07

    Liprins are a conserved family of scaffolding proteins important for the proper regulation and development of neuronal synapses. Humans have four liprin-{alpha}s and two liprin-{beta}s which all contain long coiled-coil domains followed by three tandem SAM domains. Complex interactions between the coiled-coil and SAM domains are thought to create liprin scaffolds, but the structural and biochemical properties of these domains remain largely uncharacterized. In this study we find that the human liprin-{beta}2 coiled-coil forms an extended dimer. Several protease-resistant subdomains within the liprin-{beta}1 and liprin-{beta}2 coiled-coils were also identified. A 2.0 {angstrom} crystal structure of the central, protease-resistant core of the liprin-{beta}2 coiled-coil reveals a parallel helix orientation. These studies represent an initial step toward determining the overall architecture of liprin scaffolds and understanding the molecular basis for their synaptic functions.

  19. A Set of Computationally Designed Orthogonal Antiparallel Homodimers that Expands the Synthetic Coiled-Coil Toolkit

    PubMed Central

    2015-01-01

    Molecular engineering of protein assemblies, including the fabrication of nanostructures and synthetic signaling pathways, relies on the availability of modular parts that can be combined to give different structures and functions. Currently, a limited number of well-characterized protein interaction components are available. Coiled-coil interaction modules have been demonstrated to be useful for biomolecular design, and many parallel homodimers and heterodimers are available in the coiled-coil toolkit. In this work, we sought to design a set of orthogonal antiparallel homodimeric coiled coils using a computational approach. There are very few antiparallel homodimers described in the literature, and none have been measured for cross-reactivity. We tested the ability of the distance-dependent statistical potential DFIRE to predict orientation preferences for coiled-coil dimers of known structure. The DFIRE model was then combined with the CLASSY multistate protein design framework to engineer sets of three orthogonal antiparallel homodimeric coiled coils. Experimental measurements confirmed the successful design of three peptides that preferentially formed antiparallel homodimers that, furthermore, did not interact with one additional previously reported antiparallel homodimer. Two designed peptides that formed higher-order structures suggest how future design protocols could be improved. The successful designs represent a significant expansion of the existing protein-interaction toolbox for molecular engineers. PMID:25337788

  20. Inhibition of the 26S proteasome by peptide mimics of the coiled-coil region of its ATPase subunits.

    PubMed

    Inobe, Tomonao; Genmei, Reiko

    Regulation of proteasomal degradation is an indispensable tool for biomedical studies. Thus, there is demand for novel proteasome inhibitors. Proteasomal degradation requires formation of coiled-coil structure by the N-terminal region of ATPase subunits of the proteasome cap. Here we show that peptides that mimic the N-terminal coiled-coil region of ATPase subunits interfere with proteasome function. These results suggest that coiled-coil peptides represent promising new proteasome inhibitors and that N-terminal coiled-coil regions of ATPase subunits are targets for proteasome inhibition.

  1. Corrosion degradation mechanisms in coiled tubing

    SciTech Connect

    Kane, R.D.; Cayard, M.S.

    1994-12-31

    This paper reviews the historical aspects related to the development of coiled tubing for oilfield drilling, logging, workover and production operations. It focuses on the metallurgical and process variables of coiled tubing and their interrelationship with aspects of the downhole service environment and the resultant corrosion performance. Special emphasis is placed on (1) operating conditions that can lead to excessive corrosion and/or cracking damage and corrosion fatigue and (2) metallurgical and processing parameters which can be controlled to maximize coiled tubing resistance to corrosion degradation.

  2. Coiled tubing 1994: Enhanced value through innovation

    SciTech Connect

    Teel, M.E.

    1994-01-01

    This paper discusses the growth in use of coiled tubing in well completion and development processes. Larger tubing is now available and operations expand into more demanding and critical areas as a result of research and development, innovation, and better understanding of materials and tube development. This article highlights significant coiled tubing operations, services, practices, and applications since 1990. It describes the types of materials used in coiled tubing and the strength associated with each type. Various case studies are described which use this tubing in both horizontal and directional drilling. It also is discussed as it relates to various types of enhanced recovery techniques for oil and gas wells.

  3. Collapse tests expand coiled tubing uses

    SciTech Connect

    Walker, E.J.; Mason, C.M. )

    1990-03-05

    Tests on coiled tubing have allowed the authors' company to decrease well work costs for some operations, especially squeeze cementing. They conducted collapse tests of 1.5 in. (0.095 in. and 0.109-in. wall thickness) and 1.75-in. (0.109-in. wall thickness) OD coiled tubing while under imposed axial load and differential pressure. These tests were performed to define accurate field operating limits for this size of coiled tubing. Findings from these tests are reported and discussed.

  4. D-Cysteine Ligands Control Metal Geometries within de Novo Designed Three-Stranded Coiled Coils.

    PubMed

    Pecoraro, Vincent Louis; Ruckthong, Leela; Peacock, Anna F A; Pascoe, Cherilyn E; Hemmingsen, Lars; Stuckey, Jeanne A

    2017-04-06

    While metal ion binding to naturally occurring L-amino acid proteins is well documented, understanding the impact of the opposite chirality (D) amino acids on the structure and stereochemistry of metals is in its infancy. We examine the effect of a D-configuration cysteine within a designed L-amino acid three-stranded coiled coil in order to enforce a precise coordination number on a metal center. The D-chirality does not alter the native fold, but the side-chain reorientation modifies the sterics of the metal binding pocket. L-Cys side-chains within the coiled-coil have previously been shown to rotate substantially from their preferred positions in the apo structure to create a binding site for a tetra-coordinate metal ion. However, here we show by x-ray crystallography that D-Cys side chains are preorganized with suitable geometry to bind such a ligand. This is confirmed by comparison of the Zn(II)Cl(CSL16DC)₃²¯ to the published Zn(II)(H₂O)(GRAND-CSL12AL16LC)₃¯.¹ Spectroscopic analysis indicates that the Cd(II) geometry observed using L-Cys ligands (a mixture of 3- and 4- coordinate Cd(II)) is altered to a single 4-coordinate specie when D-Cys is present. This work opens a new avenue for the control of metal site environment in man-made proteins, by simply altering the binding ligand with its mirror imaged D-configuration. Thus, use of D amino acids in a metal's coordination sphere promises to be a powerful tool for controlling the properties of future metalloproteins.

  5. Helical coil thermal hydraulic model

    NASA Astrophysics Data System (ADS)

    Caramello, M.; Bertani, C.; De Salve, M.; Panella, B.

    2014-11-01

    A model has been developed in Matlab environment for the thermal hydraulic analysis of helical coil and shell steam generators. The model considers the internal flow inside one helix and its associated control volume of water on the external side, both characterized by their inlet thermodynamic conditions and the characteristic geometry data. The model evaluates the behaviour of the thermal-hydraulic parameters of the two fluids, such as temperature, pressure, heat transfer coefficients, flow quality, void fraction and heat flux. The evaluation of the heat transfer coefficients as well as the pressure drops has been performed by means of the most validated literature correlations. The model has been applied to one of the steam generators of the IRIS modular reactor and a comparison has been performed with the RELAP5/Mod.3.3 code applied to an inclined straight pipe that has the same length and the same elevation change between inlet and outlet of the real helix. The predictions of the developed model and RELAP5/Mod.3.3 code are in fairly good agreement before the dryout region, while the dryout front inside the helical pipes is predicted at a lower distance from inlet by the model.

  6. Noncationic Rigid and Anisotropic Coiled-Coil Proteins Exhibit Cell-Penetration Activity.

    PubMed

    Nakayama, Norihisa; Hagiwara, Kyoji; Ito, Yoshihiro; Ijiro, Kuniharu; Osada, Yoshihito; Sano, Ken-ichi

    2015-08-04

    Numerous cationic peptides that penetrate cells have been studied intensively as drug delivery system carriers for cellular delivery. However, cationic molecules tend to be cytotoxic and cause inflammation, and their stability in the blood is usually low. We have previously demonstrated that a rigid and fibrous cationic coiled-coil protein exhibited cell-penetrating ability superior to that of previously reported cell-penetrating peptides. Making use of structural properties, here we describe the cell-penetrating activity of a rigid and fibrous coiled-coil protein with a noncationic surface. A fibrous coiled-coil protein of pI 6.5 penetrated 100% of the cells tested in vitro at a concentration of 500 nM, which is comparable to that of previously reported cell-penetrating peptides. We also investigated the effect of cell-strain dependency and short-term cytotoxicity.

  7. Magnetic propulsion of a magnetic device using three square-Helmholtz coils and a square-Maxwell coil.

    PubMed

    Ha, Yong H; Han, Byung H; Lee, Soo Y

    2010-02-01

    We introduce a square coil system for remote magnetic navigation of a magnetic device without any physical movements of the coils. We used three square-Helmholtz coils and a square-Maxwell coil for magnetic propulsion of a small magnet along the desired path. All the square coils are mountable on a cubic frame that has an opening to accommodate a living subject. The square-Helmholtz coils control the magnetic propulsion direction by generating uniform magnetic field along the desired direction while the square-Maxwell coil controls the propulsion force by generating magnetic gradient field. We performed magnetic propulsion experiments with a down-scaled coil set and a three-channel coil driver. Experimental results demonstrate that we can use the square coil set for magnetic navigation of a magnetic device without any physical movements of the coils.

  8. L1 retrotransposition requires rapid ORF1p oligomerization, a novel coiled coil-dependent property conserved despite extensive remodeling

    PubMed Central

    Naufer, M. Nabuan; Callahan, Kathryn E.; Cook, Pamela R.; Perez-Gonzalez, Cesar E.; Williams, Mark C.; Furano, Anthony V.

    2016-01-01

    Detailed mechanistic understanding of L1 retrotransposition is sparse, particularly with respect to ORF1p, a coiled coil-mediated homotrimeric nucleic acid chaperone that can form tightly packed oligomers on nucleic acids. Although the coiled coil motif is highly conserved, it is uniquely susceptible to evolutionary change. Here we studied three ORF1 proteins: a modern human one (111p), its resuscitated primate ancestor (555p) and a mosaic modern protein (151p) wherein 9 of the 30 coiled coil substitutions retain their ancestral state. While 111p and 555p equally supported retrotransposition, 151p was inactive. Nonetheless, they were fully active in bulk assays of nucleic acid interactions including chaperone activity. However, single molecule assays showed that 151p trimers form stably bound oligomers on ssDNA at <1/10th the rate of the active proteins, revealing that oligomerization rate is a novel critical parameter of ORF1p activity in retrotransposition conserved for at least the last 25 Myr of primate evolution. PMID:26673717

  9. Screen-printed flexible MRI receive coils.

    PubMed

    Corea, Joseph R; Flynn, Anita M; Lechêne, Balthazar; Scott, Greig; Reed, Galen D; Shin, Peter J; Lustig, Michael; Arias, Ana C

    2016-03-10

    Magnetic resonance imaging is an inherently signal-to-noise-starved technique that limits the spatial resolution, diagnostic image quality and results in typically long acquisition times that are prone to motion artefacts. This limitation is exacerbated when receive coils have poor fit due to lack of flexibility or need for padding for patient comfort. Here, we report a new approach that uses printing for fabricating receive coils. Our approach enables highly flexible, extremely lightweight conforming devices. We show that these devices exhibit similar to higher signal-to-noise ratio than conventional ones, in clinical scenarios when coils could be displaced more than 18 mm away from the body. In addition, we provide detailed material properties and components performance analysis. Prototype arrays are incorporated within infant blankets for in vivo studies. This work presents the first fully functional, printed coils for 1.5- and 3-T clinical scanners.

  10. Evolution of coiled tubing drilling technology accelerates

    SciTech Connect

    Simmons, J.; Adam, B.

    1993-09-01

    This paper reviews the status of coiled tubing technology in oil and gas drilling operations. The paper starts with a description of current coiled tubing technology and provides a cost comparison between conventional and coiled tubing drilling. The results show that offshore operations are already competitive while onshore operations will still lag behind conventional drilling methods. A list of known coiled tubing drilling operations is provided which gives the current borehole diameters and depths associated with this technology. The paper then goes on to provide the advantages and disadvantages of the technology. The advantages include improved well control, a continuous drillstring, reduced mobilization costs, simplified logging and measurement-while drilling measurements, and less tripping required. The disadvantages include high friction with the borehole wall, downhole motors required, limited drillhole size, and fatigued or damaged sections of the tubing cannot be removed. Finally, a review of the reliability of this technology is provided.

  11. The Magnetic Field of Helmholtz Coils

    ERIC Educational Resources Information Center

    Berridge, H. J. J.

    1975-01-01

    Describes the magnetic field of Helmholtz coils qualitatively and then provides the basis for a quantitative expression. Since the mathematical calculations are very involved, a computer program for solving the mathematical expression is presented and explained. (GS)

  12. Electrical wire insulation and electromagnetic coil

    DOEpatents

    Bich, George J.; Gupta, Tapan K.

    1984-01-01

    An electromagnetic coil for high temperature and high radiation application in which glass is used to insulate the electrical wire. A process for applying the insulation to the wire is disclosed which results in improved insulation properties.

  13. Cooling arrangement for a superconducting coil

    DOEpatents

    Herd, Kenneth Gordon; Laskaris, Evangelos Trifon

    1998-06-30

    A superconducting device, such as a superconducting rotor for a generator or motor. A vacuum enclosure has an interior wall surrounding a cavity containing a vacuum. A superconductive coil is placed in the cavity. A generally-annularly-arranged, thermally-conductive sheet has an inward-facing surface contacting generally the entire outward-facing surface of the superconductive coil. A generally-annularly-arranged coolant tube contains a cryogenic fluid and contacts a generally-circumferential portion of the outward-facing surface of the sheet. A generally-annularly-arranged, thermally-insulative coil overwrap generally circumferentially surrounds the sheet. The coolant tube and the inward-facing surface of the coil overwrap together contact generally the entire outward-facing surface of the sheet.

  14. Cooling arrangement for a superconducting coil

    DOEpatents

    Herd, K.G.; Laskaris, E.T.

    1998-06-30

    A superconducting device is disclosed, such as a superconducting rotor for a generator or motor. A vacuum enclosure has an interior wall surrounding a cavity containing a vacuum. A superconductive coil is placed in the cavity. A generally-annularly-arranged, thermally-conductive sheet has an inward-facing surface contacting generally the entire outward-facing surface of the superconductive coil. A generally-annularly-arranged coolant tube contains a cryogenic fluid and contacts a generally-circumferential portion of the outward-facing surface of the sheet. A generally-annularly-arranged, thermally-insulative coil overwrap generally circumferentially surrounds the sheet. The coolant tube and the inward-facing surface of the coil overwrap together contact generally the entire outward-facing surface of the sheet. 3 figs.

  15. Heterogeneous Superconducting Low-Noise Sensing Coils

    NASA Technical Reports Server (NTRS)

    Hahn, Inseob; Penanen, Konstantin I.; Ho Eom, Byeong

    2008-01-01

    A heterogeneous material construction has been devised for sensing coils of superconducting quantum interference device (SQUID) magnetometers that are subject to a combination of requirements peculiar to some advanced applications, notably including low-field magnetic resonance imaging for medical diagnosis. The requirements in question are the following: The sensing coils must be large enough (in some cases having dimensions of as much as tens of centimeters) to afford adequate sensitivity; The sensing coils must be made electrically superconductive to eliminate Johnson noise (thermally induced noise proportional to electrical resistance); and Although the sensing coils must be cooled to below their superconducting- transition temperatures with sufficient cooling power to overcome moderate ambient radiative heat leakage, they must not be immersed in cryogenic liquid baths. For a given superconducting sensing coil, this combination of requirements can be satisfied by providing a sufficiently thermally conductive link between the coil and a cold source. However, the superconducting coil material is not suitable as such a link because electrically superconductive materials are typically poor thermal conductors. The heterogeneous material construction makes it possible to solve both the electrical- and thermal-conductivity problems. The basic idea is to construct the coil as a skeleton made of a highly thermally conductive material (typically, annealed copper), then coat the skeleton with an electrically superconductive alloy (typically, a lead-tin solder) [see figure]. In operation, the copper skeleton provides the required thermally conductive connection to the cold source, while the electrically superconductive coating material shields against Johnson noise that originates in the copper skeleton.

  16. Passive energy dump for superconducting coil protection

    DOEpatents

    Luton, J.N. Jr.

    1973-01-16

    The patent describes a passive resistance type energy dump for the protection of the coils of a superconducting magnet. Insertion heaters are immersed in a rigid container filled with a fusible alloy. The energy dump is connected across the coils of the superconducting magnet wherein individual heater elements are connected singly to the windings or otherwise according to the energy dumping requirements upon transition of the magnet to a normal state.

  17. Coil tests and superconductor code calculations for the stellarator W7-X coils

    NASA Astrophysics Data System (ADS)

    Baldzuhn, J.; Ehmler, H.; Hoelting, A.; Hertel, K.; Sborchia, C.; Genini, L.; Schild, T.

    2006-07-01

    For the stellarator Wendelstein 7-X, a plasma fusion experiment, the performance of the superconducting coils is tested in a cryogenic test facility. Focus is on the quench behaviour of these coils. Some key data of the coils are given here. The coil quench data, obtained during the tests, are compared to GANDALF code calculations. GANDALF is a one-dimensional finite elements code for the simulation of the quench properties of superconducting CICC cables. Good consistency between measurement and calculation is found for the development of the resistive voltage and temperature increase during the quench.

  18. AC loss measurements in HTS coil assemblies with hybrid coil structures

    NASA Astrophysics Data System (ADS)

    Jiang, Zhenan; Long, Nicholas J.; Staines, Mike; Badcock, Rodney A.; Bumby, Chris W.; Buckley, Robert G.; Amemiya, Naoyuki

    2016-09-01

    Both AC loss and wire cost in coil windings are critical factors for high temperature superconductor (HTS) AC machinery applications. We present AC loss measurement results in three HTS coil assemblies at 77 K and 65 K which have a hybrid coil structure comprising one central winding (CW) and two end windings (EWs) wound with ReBCO and BSCCO wires with different self-field I c values at 77 K. All AC loss results in the coil assemblies are hysteretic and the normalized AC losses in the coil assemblies at different temperatures can be scaled with the I c value of the coil assemblies. The normalised results show that AC loss in a coil assembly with BSCCO CW can be reduced by using EWs wound with high I c ReBCO wires, whilst further AC loss reduction can be achieved by replacing the BSCCO CW with ReBCO CW. The results imply that a flexible hybrid coil structure is possible which considers both AC loss and wire cost in coil assemblies.

  19. The Rad50 coiled-coil domain is indispensable for Mre11 complex functions.

    PubMed

    Hohl, Marcel; Kwon, Youngho; Galván, Sandra Muñoz; Xue, Xiaoyu; Tous, Cristina; Aguilera, Andrés; Sung, Patrick; Petrini, John H J

    2011-09-04

    The Mre11 complex (Mre11, Rad50 and Xrs2 in Saccharomyces cerevisiae) influences diverse functions in the DNA damage response. The complex comprises the globular DNA-binding domain and the Rad50 hook domain, which are linked by a long and extended Rad50 coiled-coil domain. In this study, we constructed rad50 alleles encoding truncations of the coiled-coil domain to determine which Mre11 complex functions required the full length of the coils. These mutations abolished telomere maintenance and meiotic double-strand break (DSB) formation, and severely impaired homologous recombination, indicating a requirement for long-range action. Nonhomologous end joining, which is probably mediated by the globular domain of the Mre11 complex, was also severely impaired by alteration of the coiled-coil and hook domains, providing the first evidence of their influence on this process. These data show that functions of Mre11 complex are integrated by the coiled coils of Rad50.

  20. Auxiliary coil controls temperature of RF induction heater

    NASA Technical Reports Server (NTRS)

    1966-01-01

    Auxiliary coil controls the temperature of an RF induction furnace that is powered by a relatively unstable RF generator. Manual or servoed adjustments of the relative position of the auxiliary coil, which is placed in close proximity to the RF coil, changes the looseness of the RF coil and hence the corresponding heating effect of its RF field.

  1. [Surface coils for magnetic-resonance images].

    PubMed

    Rodríguez-González, Alfredo Odón; Amador-Baheza, Ricardo; Rojas-Jasso, Rafael; Barrios-Alvarez, Fernando Alejandro

    2005-01-01

    Since the introduction of magnetic resonance imaging in Mexico, the development of this important medical imaging technology has been almost non-existing in our country. The very first surface coil prototypes for clinical applications in magnetic resonance imaging has been developed at the Center of Research in Medical Imaging and Instrumentation of the Universidad Autónoma Metropolitana Iztapalapa (Metropolitan Autonomous University, Campus Iztapalapa). Two surface coil prototypes were built: a) a circular-shaped coil and b) a square-shaped coil for multiple regions of the body, such as heart, brain, knee, hands, and ankles. These coils were tested on the 1.5T imager of the ABC Hospital-Tacubaya, located in Mexico City. Brain images of healthy volunteers were obtained in different orientations: sagittal, coronal, and axial. Since images showed a good-enough clinical quality for diagnosis, it is fair to say that these coil prototypes can be used in the clinical environment, and with small modifications, they can be made compatible with almost any commercial scanner. This type of development can offer new alternatives for further collaboration between the research centers and the radiology community, in the search of new applications and developments of this imaging technique.

  2. Radiation-hard electrical coil and method for its fabrication

    DOEpatents

    Grieggs, R.J.; Blake, R.D.; Gac, F.D.

    1982-06-29

    A radiation-hard insulated electrical coil and method for making the same are disclosed. In accordance with the method, a conductor, preferably copper, is wrapped with an aluminum strip and then tightly wound into a coil. The aluminum-wrapped coil is then annealed to relax the conductor in the coiled configuration. The annealed coil is then immersed in an alkaline solution to dissolve the aluminum strip, leaving the bare conductor in a coiled configuration with all of the windings closely packed yet uniformly spaced from one another. The coil is then insulated with a refractory insulating material. In the preferred embodiment, the coil is insulated by coating it with a vitreous enamel and subsequently potting the enamelled coil in a castable ceramic concrete. The resulting coil is substantially insensitive to radiation and may be operated continuously in high radiation environments for long periods of time.

  3. Versatile Fill Coils: Initial Experience as Framing Coils for Oblong Aneurysms

    PubMed Central

    Osanai, Toshiya; Bain, Mark; Hui, Ferdinand K

    2014-01-01

    Summary Coil embolization of oblong aneurysms is difficult because the majority of commercially available coils are manufactured with a helical or spherical tertiary structure. While adopting framing strategies for oblong aneurysms (aspect ratio ≥ 2: 1), traditional coils may be undersized in the long axis but oversized in the short axis, resulting in increased aneurysmal wall stress, risk of re-rupture, and difficulty creating a basket that respects the aneurysmal neck. We review three cases in which versatile filling coils (VFCs) were used as the initial coils for embolization of oblong aneurysms and report coil distribution characteristics and clinical outcomes. Packing density after VFC implantation was assessed using the software AngioSuite-Neuro edition and AngioCalc. Illustrative case: a 58-year-old woman experienced a subarachnoid hemorrhage from a ruptured anterior communicating artery aneurysm (7.5 mm × 3.5 mm). A 3-6 mm × 15 cm VFC was selected as the first coil because the flexibility of its wave−loop structure facilitates framing of an irregularly shaped aneurysm. The loop portions of the structures tend to be pressed to the extremes of the aneurysmal sac by the wave component. The VFC was introduced smoothly into the aneurysmal sac without catheter kickback. We were then able to insert detachable filling coils without any adjunctive technique and achieved complete occlusion. Complete occlusion without severe complications was achieved in all three cases in our study. Average packing density after the first coil was 15.63%. VFC coils may have a specific role in framing oblong aneurysms given their complex loop-wave design, allowing spacing of the coils at the dome and neck while keeping sac stress to a minimum. PMID:24976090

  4. Surgical management of an ACM aneurysm eight years after coiling.

    PubMed

    Pogády, P; Fellner, F; Trenkler, J; Wurm, G

    2007-04-01

    The authors present a case report on rebleeding of a medial cerebral aneurysm (MCA) eight years after complete endovascular coiling. The primarily successfully coiled MCA aneurysm showed a local regrowth which, however, was not the source of the rebleeding. The angiogram demonstrated no evidence of contrast filling of the coiled segment, but according to intraoperative findings (haematoma location, displacement of coils, evident place of rupture) there is no doubt that the coiled segment of the aneurysm was responsible for the haemorrhage.

  5. Structural Correlation of the Neck Coil with the Coiled-coil (CC1)-Forkhead-associated (FHA) Tandem for Active Kinesin-3 KIF13A.

    PubMed

    Ren, Jinqi; Huo, Lin; Wang, Wenjuan; Zhang, Yong; Li, Wei; Lou, Jizhong; Xu, Tao; Feng, Wei

    2016-02-12

    Processive kinesin motors often contain a coiled-coil neck that controls the directionality and processivity. However, the neck coil (NC) of kinesin-3 is too short to form a stable coiled-coil dimer. Here, we found that the coiled-coil (CC1)-forkhead-associated (FHA) tandem (that is connected to NC by Pro-390) of kinesin-3 KIF13A assembles as an extended dimer. With the removal of Pro-390, the NC-CC1 tandem of KIF13A unexpectedly forms a continuous coiled-coil dimer that can be well aligned into the CC1-FHA dimer. The reverse introduction of Pro-390 breaks the NC-CC1 coiled-coil dimer but provides the intrinsic flexibility to couple NC with the CC1-FHA tandem. Mutations of either NC, CC1, or the FHA domain all significantly impaired the motor activity. Thus, the three elements within the NC-CC1-FHA tandem of KIF13A are structurally interrelated to form a stable dimer for activating the motor. This work also provides the first direct structural evidence to support the formation of a coiled-coil neck by the short characteristic neck domain of kinesin-3.

  6. Structural Correlation of the Neck Coil with the Coiled-coil (CC1)-Forkhead-associated (FHA) Tandem for Active Kinesin-3 KIF13A*

    PubMed Central

    Ren, Jinqi; Huo, Lin; Wang, Wenjuan; Zhang, Yong; Li, Wei; Lou, Jizhong; Xu, Tao; Feng, Wei

    2016-01-01

    Processive kinesin motors often contain a coiled-coil neck that controls the directionality and processivity. However, the neck coil (NC) of kinesin-3 is too short to form a stable coiled-coil dimer. Here, we found that the coiled-coil (CC1)-forkhead-associated (FHA) tandem (that is connected to NC by Pro-390) of kinesin-3 KIF13A assembles as an extended dimer. With the removal of Pro-390, the NC-CC1 tandem of KIF13A unexpectedly forms a continuous coiled-coil dimer that can be well aligned into the CC1-FHA dimer. The reverse introduction of Pro-390 breaks the NC-CC1 coiled-coil dimer but provides the intrinsic flexibility to couple NC with the CC1-FHA tandem. Mutations of either NC, CC1, or the FHA domain all significantly impaired the motor activity. Thus, the three elements within the NC-CC1-FHA tandem of KIF13A are structurally interrelated to form a stable dimer for activating the motor. This work also provides the first direct structural evidence to support the formation of a coiled-coil neck by the short characteristic neck domain of kinesin-3. PMID:26680000

  7. Minimax current density gradient coils: analysis of coil performance and heating.

    PubMed

    Poole, Michael S; While, Peter T; Lopez, Hector Sanchez; Crozier, Stuart

    2012-08-01

    Standard gradient coils are designed by minimizing the inductance or resistance for an acceptable level of gradient field nonlinearity. Recently, a new method was proposed to minimize the maximum value of the current density in a coil additionally. The stated aim of that method was to increase the minimum wire spacing and to reduce the peak temperature in a coil for fixed efficiency. These claims are tested in this study with experimental measurements of magnetic field and temperature as well as simulations of the performance of many coils. Experimental results show a 90% increase in minimum wire spacing and 40% reduction in peak temperature for equal coil efficiency and field linearity. Simulations of many more coils indicate increase in minimum wire spacing of between 50 and 340% for the coils studied here. This method is shown to be able to increase coil efficiency when constrained by minimum wire spacing rather than switching times or total power dissipation. This increase in efficiency could be used to increase gradient strength, duty cycle, or buildability.

  8. An iterative method for coil sensitivity estimation in multi-coil MRI systems.

    PubMed

    Ling, Qiang; Li, Zhaohui; Song, Kaikai; Li, Feng

    2014-12-01

    This paper presents an iterative coil sensitivity estimation method for multi-coil MRI systems. The proposed method works with coil images in the magnitude image domain. It determines a region of support (RoS), a region being composed of the same type of tissues, by a region growing algorithm, which makes use of both intensities and intensity gradients of pixels. By repeating this procedure, it can determine multiple regions of support, which together cover most of the concerned image area. The union of these regions of support provides a rough estimate of the sensitivity of each coil through dividing the intensities of pixels by the average intensity inside every region of support. The obtained rough coil sensitivity estimate is further approached with the product of multiple low-order polynomials, rather than a single one. The product of these polynomials provides a smooth estimate of the sensitivity of each coil. With the obtained sensitivities of coils, it can produce a better reconstructed image, which determines more correct regions of support and yields preciser estimates of the sensitivities of coils. In other words, the method can be iteratively implemented to improve the estimation performance. The proposed method was verified through both simulated data and clinical data from different body parts. The experimental results confirm the superiority of our method to some conventional methods.

  9. Self-sorting heterodimeric coiled coil peptides with defined and tuneable self-assembly properties

    PubMed Central

    Aronsson, Christopher; Dånmark, Staffan; Zhou, Feng; Öberg, Per; Enander, Karin; Su, Haibin; Aili, Daniel

    2015-01-01

    Coiled coils with defined assembly properties and dissociation constants are highly attractive components in synthetic biology and for fabrication of peptide-based hybrid nanomaterials and nanostructures. Complex assemblies based on multiple different peptides typically require orthogonal peptides obtained by negative design. Negative design does not necessarily exclude formation of undesired species and may eventually compromise the stability of the desired coiled coils. This work describe a set of four promiscuous 28-residue de novo designed peptides that heterodimerize and fold into parallel coiled coils. The peptides are non-orthogonal and can form four different heterodimers albeit with large differences in affinities. The peptides display dissociation constants for dimerization spanning from the micromolar to the picomolar range. The significant differences in affinities for dimerization make the peptides prone to thermodynamic social self-sorting as shown by thermal unfolding and fluorescence experiments, and confirmed by simulations. The peptides self-sort with high fidelity to form the two coiled coils with the highest and lowest affinities for heterodimerization. The possibility to exploit self-sorting of mutually complementary peptides could hence be a viable approach to guide the assembly of higher order architectures and a powerful strategy for fabrication of dynamic and tuneable nanostructured materials. PMID:26370878

  10. Modified van Vaals-Bergman coaxial cable coil (lambda coil) for high-field imaging.

    PubMed

    Matsuzawa, H; Nakada, T

    1996-03-01

    An easily constructed, low-capacitive coupling volume coil based on the van Vaals-Bergman coaxial cable coil for high field imaging is described. The coil (designated "lambda coil") was constructed using two 5/4 length 50 omega coaxial cables matched to a 50 omega transmission line with LC bridge balun. The standing wave on the single 5/4 lambda length coaxial cable provides two points of current maxima in oppositional direction. Therefore, the four current elements necessary for effective B1 field generation can be obtained by two 5/4 lambda length coaxial cables arranged analogous to 1/2 lambda T-antenna. Capacitive coupling between the coil elements and conductive samples (i.e. animals) is minimized by simply retaining the shield of the coaxial cable for the area of voltage maxima. The lambda coil exhibited excellent performance as a volume coil with a high quality factor and highly homogeneous rf fields. Because of its dramatically simple architecture and excellent performance, the lambda coil configuration appears to be an economical alternative to the original van Vaals-Bergman design, especially for research facilities with a high field magnet and limited bore space.

  11. A high-resolution structure that provides insight into coiled-coil thiodepsipeptide dynamic chemistry.

    PubMed

    Dadon, Zehavit; Samiappan, Manickasundaram; Shahar, Anat; Zarivach, Raz; Ashkenasy, Gonen

    2013-09-16

    Stable and reactive: A crystal structure at 1.35 Å of a thioester coiled-coil protein reveals high similarity to all-peptide-bond proteins. In these assemblies, the thioester bonds are kept reactive towards thiol molecules in the mixture. This enables efficient domain exchange between proteins in response to changes in folding conditions or introduction of external templates.

  12. Allosteric effects in coiled-coil proteins folding and lanthanide-ion binding.

    PubMed

    Samiappan, Manickasundaram; Alasibi, Samaa; Cohen-Luria, Rivka; Shanzer, Abraham; Ashkenasy, Gonen

    2012-10-07

    Peptide sequences modified with lanthanide-chelating groups at their N-termini, or at their lysine side chains, were synthesized, and new Ln(III) complexes were characterized. We show that partial folding of the conjugates to form trimer coiled coil structures induces coordination of lanthanides to the ligand, which in turn further stabilizes the 3D structure.

  13. Crystalline tubes of myosin subfragment-2 showing the coiled-coil and molecular interaction geometry

    PubMed Central

    1987-01-01

    We have produced crystalline tubes of chicken breast myosin long subfragment-2 that show order to resolutions better than 2 nm. The tubes were formed from a thin sheet in which the myosin long subfragment-2 molecules were arranged on an approximately rectangular crystalline lattice with a = 14.1 +/- 0.2 nm and b = 3.9 +/- 0.1 nm in projection. Shadowing indicated that the tube wall was approximately 7 nm thick and that the sheets from which it was formed followed a right- handed helix. Superposition of the lattices from the top and bottom of the tube produced a moire pattern in negatively stained material, but images of single sheets were easily obtained by computer image processing. Although several molecules were superimposed perpendicular to the plane of the sheet, the modulation in density due to the coiled- coil envelope was clear, indicating that the coiled-coils in these molecules were in register (or staggered by an even number of quarter pitches). In projection the coiled-coil had an apparent pitch of 14.1 nm (the axial repeat of the unit cell), but the small number of molecules (probably four) superimposed perpendicular to the plane of the sheet meant that pitches within approximately 1 nm of this value could have shown a modulation. Therefore, a more precise determination of the coiled-coil pitch must await determination of the sheet's three- dimensional structure. The coiled-coils of adjacent molecules within the plane of the sheet were staggered by an odd number of quarter pitches. This arrangement was similar to that between paramyosin molecules in molluscan thick filaments and may have features in common with other coiled-coil protein assemblies, such as intermediate filaments. Each molecule in the crystal had two types of neighbor: one staggered by an odd number of quarter pitches and the other by an even number of quarter pitches, as has been proposed for the general packing of coiled-coils (Longley, W., 1975, J. Mol. Biol., 93:111-115). We propose

  14. Coil in coil - components for the high voltage superconducting resistive current limiter CULT 110

    NASA Astrophysics Data System (ADS)

    Elschner, S.; Stemmle, M.; Breuer, F.; Walter, H.; Frohne, C.; Noe, M.; Bock, J.

    2008-02-01

    The German government (BMBF/VDI) funded project CULT 110 is presently the largest European current limiter project and aims at the development of a one-phase resistive limiter for the voltage level of 110 kV. The contribution presents the actual state of development of the superconducting components. As in the successful predecessor project CURL 10 these are made of melt cast processed BSCCO 2212 bulk material, however monofilar instead of bifilar coils are used. The electrical protection concept is based on a normal conducting coil arranged around a superconducting coil and connected in parallel. Simultaneously this coil serves as an electrical bypass and, under fault conditions, generates a magnetic field for quench homogenisation. Since no continuously connected shunt is needed, a much higher voltage during faults can be applied. The rules for an optimum superconductor and coil design are given and the viability of the whole concept is demonstrated by both, experiment and numerical simulation.

  15. Baculovirus FP25K Localization: Role of the Coiled-Coil Domain.

    PubMed

    Garretson, Tyler A; McCoy, Jason C; Cheng, Xiao-Wen

    2016-11-01

    Two types of viruses are produced during the baculovirus life cycle: budded virus (BV) and occlusion-derived virus (ODV). A particular baculovirus protein, FP25K, is involved in the switch from BV to ODV production. Previously, FP25K from the model alphabaculovirus Autographa californica multiple nucleopolyhedrovirus (AcMNPV) was shown to traffic ODV envelope proteins. However, FP25K localization and the domains involved are inconclusive. Here we used a quantitative approach to study FP25K subcellular localization during infection using an AcMNPV bacmid virus that produces a functional AcMNPV FP25K-green fluorescent protein (GFP) fusion protein. During cell infection, FP25K-GFP localized primarily to the cytoplasm, particularly amorphous structures, with a small fraction being localized in the nucleus. To investigate the sequences involved in FP25K localization, an alignment of baculovirus FP25K sequences revealed that the N-terminal putative coiled-coil domain is present in all alphabaculoviruses but absent in betabaculoviruses. Structural prediction indicated a strong relatedness of AcMNPV FP25K to long interspersed element 1 (LINE-1) open reading frame 1 protein (ORF1p), which contains an N-terminal coiled-coil domain responsible for cytoplasmic retention. Point mutations and deletions of this domain lead to a change in AcMNPV FP25K localization from cytoplasmic to nuclear. The coiled-coil and C-terminal deletion viruses increased BV production. Furthermore, a betabaculovirus FP25K protein lacking this N-terminal coiled-coil domain localized predominantly to the nucleus and exhibited increased BV production. These data suggest that the acquisition of this N-terminal coiled-coil domain in FP25K is important for the evolution of alphabaculoviruses. Moreover, with the divergence of preocclusion nuclear membrane breakdown in betabaculoviruses and membrane integrity in alphabaculoviruses, this domain represents an alphabaculovirus adaptation for nuclear trafficking

  16. Automated de novo phasing and model building of coiled-coil proteins.

    PubMed

    Rämisch, Sebastian; Lizatović, Robert; André, Ingemar

    2015-03-01

    Models generated by de novo structure prediction can be very useful starting points for molecular replacement for systems where suitable structural homologues cannot be readily identified. Protein-protein complexes and de novo-designed proteins are examples of systems that can be challenging to phase. In this study, the potential of de novo models of protein complexes for use as starting points for molecular replacement is investigated. The approach is demonstrated using homomeric coiled-coil proteins, which are excellent model systems for oligomeric systems. Despite the stereotypical fold of coiled coils, initial phase estimation can be difficult and many structures have to be solved with experimental phasing. A method was developed for automatic structure determination of homomeric coiled coils from X-ray diffraction data. In a benchmark set of 24 coiled coils, ranging from dimers to pentamers with resolutions down to 2.5 Å, 22 systems were automatically solved, 11 of which had previously been solved by experimental phasing. The generated models contained 71-103% of the residues present in the deposited structures, had the correct sequence and had free R values that deviated on average by 0.01 from those of the respective reference structures. The electron-density maps were of sufficient quality that only minor manual editing was necessary to produce final structures. The method, named CCsolve, combines methods for de novo structure prediction, initial phase estimation and automated model building into one pipeline. CCsolve is robust against errors in the initial models and can readily be modified to make use of alternative crystallographic software. The results demonstrate the feasibility of de novo phasing of protein-protein complexes, an approach that could also be employed for other small systems beyond coiled coils.

  17. Coil system for a mirror-based hybrid reactor

    SciTech Connect

    Hagnestal, A.; Agren, O.; Moiseenko, V. E.

    2012-06-19

    Two different superconducting coil systems for the SFLM Hybrid study - a quadrupolar mirror based fusion-fission reactor study - are presented. One coil system is for a magnetic field with 2 T at the midplane and a mirror ratio of four. This coil set consists of semiplanar coils in two layers. The alternative coil system is for a downscaled magnetic field of 1.25 T at the midplane and a mirror ratio of four, where a higher {beta} is required to achieve sufficient the neutron production. This coil set has one layer of twisted 3D coils. The 3D coils are expected to be considerably cheaper than the semiplanar, since NbTi superconductors can be used for most coils instead of Nb3Sn due to the lower magnetic field.

  18. Hydrogel-Coated Coils: Product Description and Clinical Applications

    PubMed Central

    Ferral, Hector

    2015-01-01

    Hydrogel-coated coils are truly detachable coils with a platinum core covered with hydrogel. The coils are available in 0.018- and 0.035-in systems. These coils have the ability to expand up to four times their size ∼20 minutes after deployment, thus providing a very effective mechanical vascular occlusion effect. The vessel-occlusive effect of these coils is a volume, space-occupying effect, not a thrombotic effect, as seen in fibered coils. Hydrogel-coated coils were originally developed and designed to treat brain aneurysms; however, their use has expanded to peripheral applications. Hydrogel-coated coils have been used in the management of visceral aneurysms, high-flow vascular arteriovenous fistulae, and endoleaks after endovascular thoracic and abdominal aneurysm repair. The purpose of this article is to describe the hydrogel-coated coil system, the mechanism of action, technical details for optimal deployment, and clinical applications. PMID:26622096

  19. Coupled wave model for large magnet coils

    NASA Technical Reports Server (NTRS)

    Gabriel, G. J.

    1980-01-01

    A wave coupled model based on field theory is evolved for analysis of fast electromagnetic transients on superconducting coils. It is expected to play a useful role in the design of protection methods against damage due to high voltages or any adverse effects that might arise from unintentional transients. The significant parameters of the coil are identified to be the turn to turn wave coupling coefficients and the travel time of an electromagnetic disturbance around a single turn. Unlike circuit theoretic inductor, the coil response evolves in discrete steps having durations equal to this travel time. It is during such intervals that high voltages are likely to occur. The model also bridges the gap between the low and high ends of the frequency spectrum.

  20. Coil occlusion of a subclavian mycotic aneurysm.

    PubMed

    Kische, Stephan; Ince, Hüseyin; Peuster, Matthias

    2010-06-01

    We report the first successful application of nonferromagnetic embolization coils for endovascular exclusion of a mycotic right subclavian artery aneurysm. A 58-year-old woman presented with acute cervical pain and a pulsatile mass in the right supraclavicular fossa under antibiotic medication for subacute infectious endocarditis. Diagnostic work-up including duplex sonography, digital subtraction angiography, and magnetic resonance imaging demonstrated a saccular aneurysm of the extrathoracic right subclavian artery. As an alternative to open surgery or stent-graft repair, this pathology was electively treated by transcatheter coil embolization. No neurological deficit or ischemic symptoms were noted during 9 months clinical follow-up. Multislice computed tomography scan revealed complete occlusion of the mycotic aneurysm 6 months after the interventional procedure. Transcatheter closure with Inconel embolization coils is a cost-effective and safe therapeutic option in patients with mycotic aneurysm originating from the subclavian artery.

  1. Measuring the orthogonality error of coil systems

    USGS Publications Warehouse

    Heilig, B.; Csontos, A.; Pajunpää, K.; White, Tim; St. Louis, B.; Calp, D.

    2012-01-01

    Recently, a simple method was proposed for the determination of pitch angle between two coil axes by means of a total field magnetometer. The method is applicable when the homogeneous volume in the centre of the coil system is large enough to accommodate the total field sensor. Orthogonality of calibration coil systems used for calibrating vector magnetometers can be attained by this procedure. In addition, the method can be easily automated and applied to the calibration of delta inclination–delta declination (dIdD) magnetometers. The method was tested by several independent research groups, having a variety of test equipment, and located at differing geomagnetic observatories, including: Nurmijärvi, Finland; Hermanus, South Africa; Ottawa, Canada; Tihany, Hungary. This paper summarizes the test results, and discusses the advantages and limitations of the method.

  2. Considerations against a force compensated coil

    SciTech Connect

    Hassenzahl, W.

    1988-08-01

    The cost of structural components in a large superconducting coil may well exceed the coil and cryostat cost. As a result, the idea of constructing a system composed of two different coil types assembled in such a way that the sources balance and reduce the total structural requirement is oft proposed. A suitable geometry has never been found for the fundamental reason that there can be no force compensated solution. In this paper, the general problem is presented and an analysis of the energy stored and stresses produced in the structure are described in a fundamental way. Finally, the relation between structural mass M and stored energy E, M greater than or equal to/rho/E/sigma/sub w/, that is valid for all magnetic systems is developed, where /rho/ is the density of the structure and sigma/sub w/ is the working stress in the structure. 12 refs., 2 figs.

  3. Acoustic rainbow trapping by coiling up space

    NASA Astrophysics Data System (ADS)

    Ni, Xu; Wu, Ying; Chen, Ze-Guo; Zheng, Li-Yang; Xu, Ye-Long; Nayar, Priyanka; Liu, Xiao-Ping; Lu, Ming-Hui; Chen, Yan-Feng

    2014-11-01

    We numerically realize the acoustic rainbow trapping effect by tapping an air waveguide with space-coiling metamaterials. Due to the high refractive-index of the space-coiling metamaterials, our device is more compact compared to the reported trapped-rainbow devices. A numerical model utilizing effective parameters is also calculated, whose results are consistent well with the direct numerical simulation of space-coiling structure. Moreover, such device with the capability of dropping different frequency components of a broadband incident temporal acoustic signal into different channels can function as an acoustic wavelength division de-multiplexer. These results may have potential applications in acoustic device design such as an acoustic filter and an artificial cochlea.

  4. Gas Filled Coaxial Accelerator with Compression Coil

    NASA Technical Reports Server (NTRS)

    Espy, Patrick N. (Inventor)

    1976-01-01

    A self-energized plasma compressor which compresses plasma discharged from a coaxial plasma generator. The device includes a helical shaped coil which is coaxially aligned with the center axis of the coaxial plasma generator. The plasma generator creates a current through the helical coil which, in turn, generates a time varying magnetic field that generates a force which acts radially upon the plasma. A seal is carried on the end of the coaxial plasma generator for containing gas therein. As the plasma is accelerated out the outer end of the generator, it forces the gas outwardly also compressing such. Beads are carried adjacent the small end of the helical shaped coil for being accelerated to hypervelocities by the plasma and gas. As a result of utilizing gas in the coaxial plasma generator, such minimizes ablation of the beads as well as accelerates such to higher velocities.

  5. The d'--d--d' vertical triad is less discriminating than the a'--a--a' vertical triad in the antiparallel coiled-coil dimer motif.

    PubMed

    Steinkruger, Jay D; Bartlett, Gail J; Hadley, Erik B; Fay, Lindsay; Woolfson, Derek N; Gellman, Samuel H

    2012-02-08

    Elucidating relationships between the amino-acid sequences of proteins and their three-dimensional structures, and uncovering non-covalent interactions that underlie polypeptide folding, are major goals in protein science. One approach toward these goals is to study interactions between selected residues, or among constellations of residues, in small folding motifs. The α-helical coiled coil has served as a platform for such studies because this folding unit is relatively simple in terms of both sequence and structure. Amino acid side chains at the helix-helix interface of a coiled coil participate in so-called "knobs-into-holes" (KIH) packing whereby a side chain (the knob) on one helix inserts into a space (the hole) generated by four side chains on a partner helix. The vast majority of sequence-stability studies on coiled-coil dimers have focused on lateral interactions within these KIH arrangements, for example, between an a position on one helix and an a' position of the partner in a parallel coiled-coil dimer, or between a--d' pairs in an antiparallel dimer. More recently, it has been shown that vertical triads (specifically, a'--a--a' triads) in antiparallel dimers exert a significant impact on pairing preferences. This observation provides impetus for analysis of other complex networks of side-chain interactions at the helix-helix interface. Here, we describe a combination of experimental and bioinformatics studies that show that d'--d--d' triads have much less impact on pairing preference than do a'--a--a' triads in a small, designed antiparallel coiled-coil dimer. However, the influence of the d'--d--d' triad depends on the lateral a'--d interaction. Taken together, these results strengthen the emerging understanding that simple pairwise interactions are not sufficient to describe side-chain interactions and overall stability in antiparallel coiled-coil dimers; higher-order interactions must be considered as well.

  6. The d′--d--d′ Vertical Triad is Less Discriminating Than the a′--a--a′ Vertical Triad in the Antiparallel Coiled-coil Dimer Motif

    PubMed Central

    Steinkruger, Jay D.; Bartlett, Gail J.; Hadley, Erik B.; Fay, Lindsay; Woolfson, Derek N.; Gellman, Samuel H.

    2012-01-01

    Elucidating relationships between the amino-acid sequences of proteins and their three-dimensional structures, and uncovering non-covalent interactions that underlie polypeptide folding, are major goals in protein science. One approach toward these goals is to study interactions between selected residues, or among constellations of residues, in small folding motifs. The α-helical coiled coil has served as a platform for such studies because this folding unit is relatively simple in terms of both sequence and structure. Amino acid side chains at the helix-helix interface of a coiled coil participate in so-called ‘knobs-into-holes’ (KIH) packing whereby a side chain (the knob) on one helix inserts into a space (the hole) generated by four side chains on a partner helix. The vast majority of sequence-stability studies on coiled-coil dimers have focused on lateral interactions within these KIH arrangements, for example, between an a position on one helix and an a' position of the partner in a parallel coiled-coil dimer, or between a--d' pairs in an antiparallel dimer. More recently, it has been shown that vertical triads (specifically, a'--a--a' triads) in antiparallel dimers exhibit significant impact on pairing preferences. This observation provides impetus for analysis of other complex networks of side-chain interactions at the helix-helix interface. Here, we describe a combination of experimental and bioinformatics studies that show that d'--d--d' triads have much less impact on pairing preference than do a'--a--a' triads in a small, designed antiparallel coiled-coil dimer. However, the influence of the d'--d--d' triad depends on the lateral at a'--d interaction. Taken together, these results strengthen the emerging understanding that simple pair-wise interactions are not sufficient to describe side-chain interactions and overall stability in antiparallel coiled-coil dimers; higher-order interactions must be considered as well. PMID:22296518

  7. Coiled tubing buckling implication in drilling and completing horizontal wells

    SciTech Connect

    Wu, J.; Juvkam-Wold, H.C.

    1995-03-01

    This paper discusses coiled tubing buckling and load transmission when drilling and completing horizontal wells. Comprehensive analyses and new equations are presented to predict buckling of coiled tubing, slack-off weight transmission, actual bit weight or packer load, and maximum horizontal length. Coiled tubing lock-up and yield due to buckling are also discussed. These equations can also be used for other coiled tubing operations, such as coiled tubing workover, coiled tubing well stimulation, and even for conventional joint-connected drill strings. Calculations based on the equations presented are also compared with the previous literature.

  8. Resistive demountable toroidal-field coils for tokamak reactors

    SciTech Connect

    Jassby, D.L.; Jacobsen, R.A.; Kalnavarns, J.; Masson, L.S.; Sekot, J.P.

    1981-07-01

    Readily demountable TF (toroidal-field) coils allow complete access to the internal components of a tokamak reactor for maintenance of replacement. The requirement of readily demountable joints dictates the use of water-cooled resistive coils, which have a host of decisive advantages over superconducting coils. Previous papers have shown that resistive TF coils for tokamak reactors can operate in the steady state with acceptable power dissipation (typically, 175 to 300 MW). This paper summarizes results of parametric studies of size optimization of rectangular TF coils and of a finite-element stress analysis, and examines several candidate methods of implementing demountable joints for rectangular coils constructed of plate segments.

  9. Analytical and experimental analysis of tube coil heat exchanger

    NASA Astrophysics Data System (ADS)

    Smusz, R.

    2016-09-01

    The paper presents the analytical and experimental analysis of heat transfer for the finned tube coil heat exchanger immersed in thermal storage tank. The tank is equipped with three helical-shaped heating coils and cylindrical- shaped stratification device. Two coils, upper and lower, use the water as a heating medium. The third, double wall heat exchanger coil, located at the bottom head on the tank is filled by the refrigerant (freon). Calculations of thermal power of water coil were made. Correlations of heat transfer coefficients in curved tubes were applied. In order to verify the analytical calculations the experimental studies of heat transfer characteristic for coil heat exchanger were performed.

  10. Self-assembling segmented coiled tubing

    DOEpatents

    Raymond, David W.

    2016-09-27

    Self-assembling segmented coiled tubing is a concept that allows the strength of thick-wall rigid pipe, and the flexibility of thin-wall tubing, to be realized in a single design. The primary use is for a drillstring tubular, but it has potential for other applications requiring transmission of mechanical loads (forces and torques) through an initially coiled tubular. The concept uses a spring-loaded spherical `ball-and-socket` type joint to interconnect two or more short, rigid segments of pipe. Use of an optional snap ring allows the joint to be permanently made, in a `self-assembling` manner.

  11. Superconductor coil geometry and ac losses

    NASA Technical Reports Server (NTRS)

    Pierce, T. V., Jr.; Zapata, R. N.

    1976-01-01

    An empirical relation is presented which allows simple computation of volume-averaged winding fields from central fields for coils of small rectangular cross sections. This relation suggests that, in certain applications, ac-loss minimization can be accomplished by use of low winding densities, provided that hysteresis losses are independent of winding density. The ac-loss measurements on coils wound of twisted multifilamentary composite superconductors show no significant dependence on ac losses on winding density, thus permitting the use of winding density as an independent design parameter in loss minimization.

  12. High-Efficiency Helical Coil Electromagnetic Launcher

    DTIC Science & Technology

    2006-08-31

    partly supported by the research include C. Keawboonchuay (PhD), S. Huenefeldt (MS), S. Rohe (MS), C. Nunnally (PhD). Faculty include T.G. Engel, W.C...Magnetics, vol. 42, no. 8, pp 2043 - 2051, 2006. 2. T.G. Engel and S. Rohe , "A comparison of single-layer coaxial coil mutual inductance calculations... Rohe , "Investigation of the accuracy of Grover’s method when solving for the mutual inductance of two single-layer coaxial coils," MS Thesis

  13. Superconducting Coil Winding Machine Control System

    SciTech Connect

    Nogiec, J. M.; Kotelnikov, S.; Makulski, A.; Walbridge, D.; Trombly-Freytag, K.

    2016-10-05

    The Spirex coil winding machine is used at Fermilab to build coils for superconducting magnets. Recently this ma-chine was equipped with a new control system, which al-lows operation from both a computer and a portable remote control unit. This control system is distributed between three layers, implemented on a PC, real-time target, and FPGA, providing respectively HMI, operational logic and direct controls. The system controls motion of all mechan-ical components and regulates the cable tension. Safety is ensured by a failsafe, redundant system.

  14. Characteristics of bowl-shaped coils for transcranial magnetic stimulation

    NASA Astrophysics Data System (ADS)

    Yamamoto, Keita; Suyama, Momoko; Takiyama, Yoshihiro; Kim, Dongmin; Saitoh, Youichi; Sekino, Masaki

    2015-05-01

    Transcranial magnetic stimulation (TMS) has recently been used as a method for the treatment of neurological and psychiatric diseases. Daily TMS sessions can provide continuous therapeutic effectiveness, and the installation of TMS systems at patients' homes has been proposed. A figure-eight coil, which is normally used for TMS therapy, induces a highly localized electric field; however, it is challenging to achieve accurate coil positioning above the targeted brain area using this coil. In this paper, a bowl-shaped coil for stimulating a localized but wider area of the brain is proposed. The coil's electromagnetic characteristics were analyzed using finite element methods, and the analysis showed that the bowl-shaped coil induced electric fields in a wider area of the brain model than a figure-eight coil. The expanded distribution of the electric field led to greater robustness of the coil to the coil-positioning error. To improve the efficiency of the coil, the relationship between individual coil design parameters and the resulting coil characteristics was numerically analyzed. It was concluded that lengthening the outer spherical radius and narrowing the width of the coil were effective methods for obtaining a more effective and more uniform distribution of the electric field.

  15. Isolation and cloning of Omp alpha, a coiled-coil protein spanning the periplasmic space of the ancestral eubacterium Thermotoga maritima.

    PubMed Central

    Engel, A M; Cejka, Z; Lupas, A; Lottspeich, F; Baumeister, W

    1992-01-01

    We have discovered a new oligomeric protein component associated with the outer membrane of the ancestral eubacterium Thermotoga maritima. In electron micrographs, the protein, Omp alpha, appears as a rod-shaped spacer that spans the periplasm, connecting the outer membrane to the inner cell body. Purification, biochemical characterization and sequencing of Omp alpha suggest that it is a homodimer composed of two subunits of 380 amino acids with a calculated M(r) of 43,000 and a pI of 4.54. The sequence of the omp alpha gene indicates a tripartite organization of the protein with a globular NH2-terminal domain of 64 residues followed by a putative coiled-coil segment of 300 residues and a COOH-terminal, membrane-spanning segment. The predicted length of the coiled-coil segment (45 nm) correlates closely with the spacing between the inner and outer membranes. Despite sequence similarity to a large number of coiled-coil proteins and high scores in a coiled-coil prediction algorithm, the sequence of the central rod-shaped domain of Omp alpha does not have the typical 3.5 periodicity of coiled-coil proteins but rather has a periodicity of 3.58 residues. Such a periodicity was also found in the central domain of staphylococcal M protein and beta-giardin and might be indicative of a subclass of fibrous proteins with packing interactions that are distinct from the ones seen in other two-stranded coiled-coils. Images PMID:1330536

  16. Tx/Rx Head Coil Induces Less RF Transmit-Related Heating than Body Coil in Conductive Metallic Objects Outside the Active Area of the Head Coil

    PubMed Central

    Nagy, Zoltan; Oliver-Taylor, Aaron; Kuehne, Andre; Goluch, Sigrun; Weiskopf, Nikolaus

    2017-01-01

    The transmit–receive (Tx/Rx) birdcage head coil is often used for excitation instead of the body coil because of the presumably lower risk of heating in and around conductive implants. However, this common practice has not been systematically tested. To investigate whether the Tx/Rx birdcage head coil produces less heating than the body coil when scanning individuals with implants, we used a 3T clinical scanner and made temperature measurements around a straight 15 cm conductor using either the Tx/Rx body or the head coil for excitation. Additionally, the transmitted fields of a Tx/Rx head coil were measured both in air and in gel using a resonant and a non-resonant B field probes as well as a non-resonant E field probe. Simulations using a finite-difference time domain solver were compared with the experimental findings. When the body coil was used for excitation, we observed heating around the 15 cm wire at various anatomical locations (both within and outside of the active volume of the head coil). Outside its active area, no such heating was observed while using the Tx/Rx head coil for excitation. The E and B fields of the Tx/Rx birdcage head coil extended well-beyond the physical dimensions of the coil. In air, the fields were monotonically decreasing, while in gel they were more complex with local maxima at the end of the ASTM phantom. These experimental findings were line with the simulations. While caution must always be exercised when scanning individuals with metallic implants, these findings support the use of the Tx/Rx birdcage head coil in place of the body coil at 3T in order to reduce the risk of heating in and around conductive implants that are remote from the head coil. PMID:28184184

  17. Tx/Rx Head Coil Induces Less RF Transmit-Related Heating than Body Coil in Conductive Metallic Objects Outside the Active Area of the Head Coil.

    PubMed

    Nagy, Zoltan; Oliver-Taylor, Aaron; Kuehne, Andre; Goluch, Sigrun; Weiskopf, Nikolaus

    2017-01-01

    The transmit-receive (Tx/Rx) birdcage head coil is often used for excitation instead of the body coil because of the presumably lower risk of heating in and around conductive implants. However, this common practice has not been systematically tested. To investigate whether the Tx/Rx birdcage head coil produces less heating than the body coil when scanning individuals with implants, we used a 3T clinical scanner and made temperature measurements around a straight 15 cm conductor using either the Tx/Rx body or the head coil for excitation. Additionally, the transmitted fields of a Tx/Rx head coil were measured both in air and in gel using a resonant and a non-resonant B field probes as well as a non-resonant E field probe. Simulations using a finite-difference time domain solver were compared with the experimental findings. When the body coil was used for excitation, we observed heating around the 15 cm wire at various anatomical locations (both within and outside of the active volume of the head coil). Outside its active area, no such heating was observed while using the Tx/Rx head coil for excitation. The E and B fields of the Tx/Rx birdcage head coil extended well-beyond the physical dimensions of the coil. In air, the fields were monotonically decreasing, while in gel they were more complex with local maxima at the end of the ASTM phantom. These experimental findings were line with the simulations. While caution must always be exercised when scanning individuals with metallic implants, these findings support the use of the Tx/Rx birdcage head coil in place of the body coil at 3T in order to reduce the risk of heating in and around conductive implants that are remote from the head coil.

  18. High-field superconducting nested coil magnet

    NASA Technical Reports Server (NTRS)

    Laverick, C.; Lobell, G. M.

    1970-01-01

    Superconducting magnet, employed in conjunction with five types of superconducting cables in a nested solenoid configuration, produces total, central magnetic field strengths approaching 70 kG. The multiple coils permit maximum information on cable characteristics to be gathered from one test.

  19. Further advances in coiled-tubing drilling

    SciTech Connect

    Eide, E.; Brinkhorst, J.; Voelker, H.; Burge, P.; Ewen, R.L.

    1994-12-31

    The use of coiled tubing to drill horizontal re-entry wells has received considerable interest in the industry over the last two years. The benefit of being able to drill at balance, safely and in a controlled manner, using nitrogen to reduce down hole pressure while drilling highly depleted reservoirs, provides an advantage over conventional techniques, particularly in reducing impairment to the formation. The paper describes such a horizontal re-entry drilled in the shallow depleted water flooded reservoir Barenburg in Northern Germany. The entire program was executed with no intervention from a conventional rig or workover hoist. A special structure to be positioned over the well to support the coiled tubing injector head and to provide a work platform had to be constructed for this type of operation. A dedicated mast for lifting of pipe and down hole tools was placed on the substructure. The development of a surface controlled orienting tool and an adjustable motor provided excellent directional capabilities on a 2 3/8 in. coiled tubing. This program represents a significant extension of the capabilities of drilling with coiled tubing.

  20. Pumpdown assistance extends coiled tubing reach

    SciTech Connect

    Tailby, R.J. )

    1992-07-01

    One of the most challenging coiled tubing applications to emerge in the last few years is horizontal well maintenance. When wireline cannot be used, techniques that offer some of the same flexibility, availability and relatively low cost must be used. During this same period, however, drilling technology has also made huge strides in horizontal and extended-reach areas. Wells are now being drilled with horizontal lengths in excess of 6,000 ft and measured depths of more than 22,000 ft. This paper reports that although horizontal wells are definitely here to stay, many operators have had to reevaluate their positions after being confronted with the problem of recompleting these wells to eliminate excessive water or gas production. A full workover with workstring using either a drilling rig or snubbing unit can be expensive and may lead to lost production because of limited rig availability. Coiled tubing has successfully been used in most cases thus far, but it has length and horizontal reach limitations that drilling technology will soon overtake. Within the constraints of current technology and tube capabilities, coiled tubing does not have the buckling resistance or reel capacity to service today's longest horizontal and extended reach wells or those planned and foreseen in the future. Even if coiled tubing can reach TD, operations requiring downward force are severely restricted.

  1. Squeeze cement method using coiled tubing

    SciTech Connect

    Underdown, D.R.; Ashford, J.D.; Harrison, T.W.; Eastlack, J.K.; Blount, C.G.; Herring, G.D.

    1986-12-09

    A method is described of squeeze cementing a well wherein the well has a casing throughout the wellbore, casing cement between the casing and the wellbore of the well, perforations through the casing and the casing cement to establish fluid communication between the interior of the casing and a formation adjacent the perforations, channels in the casing cement in fluid communication with at least some of the perforations, a well tubing string in the casing extending from the surface to the proximity of the perforations, and a packer means for sealing between the tubing and the casing above the perforations. The method consists of: isolating the casing adjacent the perforations; lowering a coiled tubing down the well tubing string to a point adjacent the perforations; flowing uncontaminated squeeze cement through the coiled tubing and through the perforations into the channels; flowing a cement contaminating liquid down the coiled tubing to mix with the squeeze cement remaining in the casing; allowing the uncontaminated squeeze cement in the channels to harden; and removing the contaminated squeeze cement from the casing through the coiled tubing.

  2. How loads affect coiled tubing life

    SciTech Connect

    Walker, E.J. Inc., AK )

    1992-01-01

    Fatigue testing was performed on 1-3/4-in OD, 0.125 in. wall thickness (WT) coiled tubing using a standard coiled tubing unit (CTU) as shown in this paper. Testing was conducted under Prudhoe Bay, Alaska oil well, conditions to determine the effects of axial load, internal pressure and bending stress on the longevity, or usable running footage, that can be expected with larger diameter tubing. The CTU was rigged up in a standard configuration with injector head 50 ft off the ground, the worst case for bending on most currently available North Slope units. Internal pressure was supplied by a small triplex pump and the end of tubing was closed off with a fishing neck and bull plug. Weight, for the first four tests, was suspended from the coiled tubing by a special clamp. The tubing was cycled up and over the guide arch until a loss of internal coiled tubing pressure (CTP) occurred, or until the tubing became stuck in the stripper brass.

  3. Stellarator Coil Design and Plasma Sensitivity

    SciTech Connect

    Long-Poe Ku and Allen H. Boozer

    2010-11-03

    The rich information contained in the plasma response to external magnetic perturbations can be used to help design stellarator coils more effectively. We demonstrate the feasibility by first devel- oping a simple, direct method to study perturbations in stellarators that do not break stellarator symmetry and periodicity. The method applies a small perturbation to the plasma boundary and evaluates the resulting perturbed free-boundary equilibrium to build up a sensitivity matrix for the important physics attributes of the underlying configuration. Using this sensitivity information, design methods for better stellarator coils are then developed. The procedure and a proof-of-principle application are given that (1) determine the spatial distributions of external normal magnetic field at the location of the unperturbed plasma boundary to which the plasma properties are most sen- sitive, (2) determine the distributions of external normal magnetic field that can be produced most efficiently by distant coils, (3) choose the ratios of the magnitudes of the the efficiently produced magnetic distributions so the sensitive plasma properties can be controlled. Using these methods, sets of modular coils are found for the National Compact Stellarator Experiment (NCSX) that are either smoother or can be located much farther from the plasma boundary than those of the present design.

  4. Flexible coiled spline securely joins mating cylinders

    NASA Technical Reports Server (NTRS)

    Coppernol, R. W.

    1966-01-01

    Mating cylindrical members are joined by spline to form an integral structure. The spline is made of tightly coiled, high tensile-strength steel spiral wire that fits a groove between the mating members. It provides a continuous bearing surface for axial thrust between the members.

  5. Simplified deflection-coil linearity testing

    NASA Technical Reports Server (NTRS)

    Kramer, G. P.

    1976-01-01

    Mask placed over face of image-dissecting photomultiplier tube has precision array of pinholes that permit light to impinge on tube at known points. Signals are fed to deflection coil which sweeps beam across each point without complex operator procedures.

  6. Tool Removes Coil-Spring Thread Inserts

    NASA Technical Reports Server (NTRS)

    Collins, Gerald J., Jr.; Swenson, Gary J.; Mcclellan, J. Scott

    1991-01-01

    Tool removes coil-spring thread inserts from threaded holes. Threads into hole, pries insert loose, grips insert, then pulls insert to thread it out of hole. Effects essentially reverse of insertion process to ease removal and avoid further damage to threaded inner surface of hole.

  7. Sextupole correction coils for SSC model dipoles

    SciTech Connect

    Rechen, J.B.; Gilbert, W.S.; Hassenzahl, W.V.

    1985-05-01

    Local correction of the sextupole error field is proposed for the dipoles of the SSC. This requirement is imposed on the design by the high field quality required both during injection at low fields and during colliding beam operation at high fields. Error fields in the main dipole windings due to superconductor magnetization and conductor misplacements and unwanted sextupole and decapole magnetic field terms. To correct the sextupole error field we have constructed sextupole coils made of a single layer of superconducting wire and have mounted them with high precision on the stainless steel bore tube. These correction coils have been operated with 1 meter long SSC model dipoles in both the self-powered and externally-powered modes. The sextupole field in the bore has been reduced by as much as a factor of 50. The level of correction depends strongly on the angular alignment of the correction coil with respect to the sextupole error field it is to correct. Results of tests, performance of the correction coils and alignment requirements for the system are presented.

  8. Thermophoresis of polymers: nondraining vs draining coil.

    PubMed

    Morozov, Konstantin I; Köhler, Werner

    2014-06-10

    Present theories for the thermophoretic mobility of polymers in dilute solution without long-ranged electrostatic interaction are based on a draining coil model with short-ranged segment-solvent interaction. We show that the characteristic thermophoretic interaction decays as r(-2) with the distance from the chain segment, which is of much longer range than the underlying rapidly decaying binary van der Waals interaction (∝ r(-6)). As a consequence, thermophoresis on the monomer level is governed by volume forces, resulting in hydrodynamic coupling between the chain segments. The inner parts of the nondraining coil do not actively participate in thermophoresis. The flow lines penetrate only into a thin surface layer of the coil and cause tangential stresses along the surface of the entire coil, not the individual segments. This model is motivated by recent experimental findings for thermoresponsive polymers and core-shell particles, and it explains the well-known molar mass independent thermophoretic mobility of polymers in dilute solution.

  9. Transcatheter Coil Embolization of Splenic Artery Aneurysm

    SciTech Connect

    Yamamoto, Satoshi Hirota, Shozo; Maeda, Hiroaki; Achiwa, Sachiko Arai, Keisuke; Kobayashi, Kaoru; Nakao, Norio

    2008-05-15

    The purpose of this study was to evaluate clinical results and technical problems of transcatheter coil embolization for splenic artery aneurysm. Subjects were 16 patients (8 men, 8 women; age range, 40-80 years) who underwent transcatheter embolization for splenic artery aneurysm (14 true aneurysms, 2 false aneurysms) at one of our hospitals during the period January 1997 through July 2005. Two aneurysms (12.5%) were diagnosed at the time of rupture. Multiple splenic aneurysms were found in seven patients. Aneurysms were classified by site as proximal (or strictly ostial) (n = 3), middle (n = 3), or hilar (n = 10). The indication for transcatheter arterial embolization was a false or true aneurysm 20 mm in diameter. Embolic materials were fibered coils and interlocking detachable coils. Embolization was performed by the isolation technique, the packing technique, or both. Technically, all aneurysms were devascularized without severe complications. Embolized aneurysms were 6-40 mm in diameter (mean, 25 mm). Overall, the primary technical success rate was 88% (14 of 16 patients). In the remaining 2 patients (12.5%), partial recanalization occurred, and re-embolization was performed. The secondary technical success rate was 100%. Seven (44%) of the 16 study patients suffered partial splenic infarction. Intrasplenic branching originating from the aneurysm was observed in five patients. We conclude that transcatheter coil embolization should be the initial treatment of choice for splenic artery aneurysm.

  10. Detail of heating coil for Machine Shop (Bldg. 163) ventilation ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Detail of heating coil for Machine Shop (Bldg. 163) ventilation system Note portion of fan visible behind coil - Atchison, Topeka, Santa Fe Railroad, Albuquerque Shops, Machine Shop, 908 Second Street, Southwest, Albuquerque, Bernalillo County, NM

  11. Coiled-Coil Irregularities and Instabilities in Group A Streptococcus M1 Are Required for Virulence

    SciTech Connect

    McNamara, Case; Zinkernagel, Annelies S.; Macheboeuf, Pauline; Cunningham, Madeleine W.; Nizet, Victor; Ghosh, Partho

    2008-07-21

    Antigenically variable M proteins are major virulence factors and immunogens of the human pathogen group A Streptococcus (GAS). Here, we report the -3 angstrom resolution structure of a GAS M1 fragment containing the regions responsible for eliciting type-specific, protective immunity and for binding fibrinogen, which promotes M1 proinflammatory and antiphagocytic functions. The structure revealed substantial irregularities and instabilities throughout the coiled coil of the M1 fragment. Similar structural irregularities occur in myosin and tropomyosin, explaining the patterns of cross-reactivity seen in autoimmune sequelae of GAS infection. Sequence idealization of a large segment of the M1 coiled coil enhanced stability but diminished fibrinogen binding, proinflammatory effects, and antibody cross-reactivity, whereas it left protective immunogenicity undiminished. Idealized M proteins appear to have promise as vaccine immunogens.

  12. Multiple-Coil, Pulse-Induction Metal Detector

    NASA Technical Reports Server (NTRS)

    Lesky, Edward S.; Reid, Alan M.; Bushong, Wilton E.; Dickey, Duane P.

    1988-01-01

    Multiple-head, pulse-induction metal detector scans area of 72 feet squared with combination of eight detector heads, each 3 ft. square. Head includes large primary coil inducing current in smaller secondary coils. Array of eight heads enables searcher to cover large area quickly. Pulses applied to primary coil, induced in secondary coils measured to determine whether metal present within range of detector head. Detector designed for recovery of Space Shuttle debris.

  13. ECH Plasma Experiments on an Internal Coil Device with a High Temperature Superconductor Coil

    SciTech Connect

    Ogawa, Yuichi; Morikawa, Junji; Ohkuni, Kotaro; Yamakoshi, Shigeo; Goto, Takuya; Mito, Toshiyuki; Yanagi, Nagato; Iwakuma, Masataka

    2005-01-15

    Self-organization related with relaxation phenomenon is playing an important role in various aspects of magnetic confined plasmas. Recently a relaxation theory including the plasma flow has been developed by Mahajan-Yoshida, and a new relaxation state has been identified. The two-fluid relaxation condition is given by {beta} + (V/V{sub A}){sup 2} = const. To study a self-organized structure with strong plasma flow, we have introduced an internal coil device. By inducing a radial electric field with appropriate methods, we could drive a toroidal plasma flow, and confine a high beta plasma in a core region. The internal coil device Mini-RT with a high temperature superconductor(HTS) coil(Rc=0.15m, Ic=50kA) has been constructed. The vacuum chamber is 1 m in diameter and {approx}0.7 m in height. The magnetic field strength near the internal coil is around 0.1 T, and a radio-frequency wave of 2.45 GHz is applied for the plasma production. We have started ECH plasma experiments with the coil supported mechanically. The electron density, which has a peak near the internal coil, is of order 10{sup 16} m{sup -3}, reaching the cut-off density of the microwave. While, the electron temperature is of order 10 eV with a broad profile. Estimated energy confinement time is of order 10{sup -(5-6)} sec. The levitation experiment of the HTS coil has been carried out. The position of the HTS coil is measured with laser sensors, and is feedback-controlled with the levitation coil current. We have succeeded to levitating the HTS coil during one hour with an accuracy of less than 20 {omega}m. A preliminary experiment for the plasma production at the floating condition of the HTS coil has been initiated. It is affirmed that the levitation system works well and plasma with separatrix configuration is produced.

  14. Compressing DNA sequence databases with coil

    PubMed Central

    White, W Timothy J; Hendy, Michael D

    2008-01-01

    Background Publicly available DNA sequence databases such as GenBank are large, and are growing at an exponential rate. The sheer volume of data being dealt with presents serious storage and data communications problems. Currently, sequence data is usually kept in large "flat files," which are then compressed using standard Lempel-Ziv (gzip) compression – an approach which rarely achieves good compression ratios. While much research has been done on compressing individual DNA sequences, surprisingly little has focused on the compression of entire databases of such sequences. In this study we introduce the sequence database compression software coil. Results We have designed and implemented a portable software package, coil, for compressing and decompressing DNA sequence databases based on the idea of edit-tree coding. coil is geared towards achieving high compression ratios at the expense of execution time and memory usage during compression – the compression time represents a "one-off investment" whose cost is quickly amortised if the resulting compressed file is transmitted many times. Decompression requires little memory and is extremely fast. We demonstrate a 5% improvement in compression ratio over state-of-the-art general-purpose compression tools for a large GenBank database file containing Expressed Sequence Tag (EST) data. Finally, coil can efficiently encode incremental additions to a sequence database. Conclusion coil presents a compelling alternative to conventional compression of flat files for the storage and distribution of DNA sequence databases having a narrow distribution of sequence lengths, such as EST data. Increasing compression levels for databases having a wide distribution of sequence lengths is a direction for future work. PMID:18489794

  15. Data-Driven Prediction and Design of bZIP Coiled-Coil Interactions

    PubMed Central

    Potapov, Vladimir; Kaplan, Jenifer B.; Keating, Amy E.

    2015-01-01

    Selective dimerization of the basic-region leucine-zipper (bZIP) transcription factors presents a vivid example of how a high degree of interaction specificity can be achieved within a family of structurally similar proteins. The coiled-coil motif that mediates homo- or hetero-dimerization of the bZIP proteins has been intensively studied, and a variety of methods have been proposed to predict these interactions from sequence data. In this work, we used a large quantitative set of 4,549 bZIP coiled-coil interactions to develop a predictive model that exploits knowledge of structurally conserved residue-residue interactions in the coiled-coil motif. Our model, which expresses interaction energies as a sum of interpretable residue-pair and triplet terms, achieves a correlation with experimental binding free energies of R = 0.68 and significantly out-performs other scoring functions. To use our model in protein design applications, we devised a strategy in which synthetic peptides are built by assembling 7-residue native-protein heptad modules into new combinations. An integer linear program was used to find the optimal combination of heptads to bind selectively to a target human bZIP coiled coil, but not to target paralogs. Using this approach, we designed peptides to interact with the bZIP domains from human JUN, XBP1, ATF4 and ATF5. Testing more than 132 candidate protein complexes using a fluorescence resonance energy transfer assay confirmed the formation of tight and selective heterodimers between the designed peptides and their targets. This approach can be used to make inhibitors of native proteins, or to develop novel peptides for applications in synthetic biology or nanotechnology. PMID:25695764

  16. Embolization of Large Aneurysms with Long Wire Coils

    SciTech Connect

    Golzarian, Jafar; Dussaussois, Luc; Ait Said, Kamel; Abada, Hicham T.; Dereume, Jean P.; Struyven, Julien

    2002-01-15

    The authors report the experience of using long coils of 2 m length in the management of large aneurysms. Knowledge of the characteristics of these coils is of value for correct placement. These coils are safe and cost-effective for excluding large aneurysms.

  17. Embolization of large aneurysms with long wire coils.

    PubMed

    Golzarian, Jafar; Dussaussois, Luc; Ait Said, Kamel; Abada, Hicham T; Dereume, Jean P; Struyven, Julien

    2002-01-01

    The authors report the experience of using long coils of 2 m length in the management of large aneurysms. Knowledge of the characteristics of these coils is of value for correct placement. These coils are safe and cost-effective for excluding large aneurysms.

  18. Open coil structure for bubble-memory-device packaging

    NASA Technical Reports Server (NTRS)

    Chen, T. T.; Ypma, J. E.

    1975-01-01

    Concept has several important advantages over close-wound system: memory and coil chips are separate and interchangeable; interconnections in coil level are eliminated by packing memory chip and electronics in single structure; and coil size can be adjusted to optimum value in terms of power dissipation and field uniformity.

  19. New Retrievable Coil Anchors: Preliminary In Vivo Experiences in Swine

    SciTech Connect

    Konya, A. Wright, K.C.

    2005-04-15

    Purpose. To design and test retrievable coil anchors to improve the safety and efficacy of coil embolization. Methods. Fifty-two 0.038-inch homemade retrievable stainless steel coils were equipped with one of four different pre-shaped nitinol anchors and tested in 38 pigs. All coils with the anchor were completely retrieved and redeployed 3-18 times (median 7 times) prior to release. Types 1 and 2 anchored coils were acutely deployed in the external iliac arteries (n = 10 each), and chronically tested (1 week) in the common carotid arteries (n = 6 each). Larger type 1 (n = 4), type 3 (n = 6), and type 4 (n = 4) anchored coils were acutely deployed in the abdominal aorta. The largest type 1 anchors (n = 6) were acutely tested in the inferior vena cava. Results. All anchored coils were successfully retrieved and repositioned several times. All but two coils formed a compact plug and there was no coil migration except with two mechanically defective type 3 anchors. Conclusion. The use of retrievable anchors allowed the coils to be retrieved and repositioned, prevented coil migration, and enabled compact coil configuration.

  20. Modeling Endovascular MRI Coil Coupling with Transmit RF Excitation

    PubMed Central

    Venkateswaran, Madhav; Unal, Orhan; Hurley, Samuel; Samsonov, Alexey; Wang, Peng; Fain, Sean; Kurpad, Krishna

    2016-01-01

    Objective To model inductive coupling of endovascular coils with transmit RF excitation for selecting coils for MRI-guided interventions. Methods Independent and computationally efficient FEM models are developed for the endovascular coil, cable, transmit excitation and imaging domain. Electromagnetic and circuit solvers are coupled to simulate net B1+ fields and induced currents and voltages. Our models are validated using the Bloch Siegert B1+ mapping sequence for a series-tuned multimode coil, capable of tracking, wireless visualization and high resolution endovascular imaging. Results Validation shows good agreement at 24, 28 and 34 μT background RF excitation within experimental limitations. Quantitative coil performance metrics agree with simulation. A parametric study demonstrates trade off in coil performance metrics when varying number of coil turns. Tracking, imaging and wireless marker multimode coil features and their integration is demonstrated in a pig study. Conclusion Developed models for the multimode coil were successfully validated. Modeling for geometric optimization and coil selection serves as a precursor to time-consuming and expensive experiments. Specific applications demonstrated include parametric optimization, coil selection for a cardiac intervention and an animal imaging experiment. Significance Our modular, adaptable and computationally efficient modeling approach enables rapid comparison, selection and optimization of inductively-coupled coils for MRI-guided interventions. PMID:26960218

  1. Strong contributions from vertical triads to helix-partner preferences in parallel coiled coils.

    PubMed

    Steinkruger, Jay D; Bartlett, Gail J; Woolfson, Derek N; Gellman, Samuel H

    2012-09-26

    Pairing preferences in heterodimeric coiled coils are determined by complementarities among side chains that pack against one another at the helix-helix interface. However, relationships between dimer stability and interfacial residue identity are not fully understood. In the context of the "knobs-into-holes" (KIH) packing pattern, one can identify two classes of interactions between side chains from different helices: "lateral", in which a line connecting the adjacent side chains is perpendicular to the helix axes, and "vertical", in which the connecting line is parallel to the helix axes. We have previously analyzed vertical interactions in antiparallel coiled coils and found that one type of triad constellation (a'-a-a') exerts a strong effect on pairing preferences, while the other type of triad (d'-d-d') has relatively little impact on pairing tendencies. Here, we ask whether vertical interactions (d'-a-d') influence pairing in parallel coiled-coil dimers. Our results indicate that vertical interactions can exert a substantial impact on pairing specificity, and that the influence of the d'-a-d' triad depends on the lateral a' contact within the local KIH motif. Structure-informed bioinformatic analyses of protein sequences reveal trends consistent with the thermodynamic data derived from our experimental model system in suggesting that heterotriads involving Leu and Ile are preferred over homotriads involving Leu and Ile.

  2. A coiled-coil interaction mediates cauliflower mosaic virus cell-to-cell movement

    NASA Astrophysics Data System (ADS)

    Stavolone, Livia; Villani, Maria Elena; Leclerc, Denis; Hohn, Thomas

    2005-04-01

    The function of the virion-associated protein (VAP) of cauliflower mosaic virus (CaMV) has long been only poorly understood. VAP is associated with the virion but is dispensable for virus morphogenesis and replication. It mediates virus transmission by aphids through simultaneous interaction with both the aphid transmission factor and the virion. However, although insect transmission is not fundamental to CaMV survival, VAP is indispensable for spreading the virus infection within the host plant. We used a GST pull-down technique to demonstrate that VAP interacts with the viral movement protein through coiled-coil domains and surface plasmon resonance to measure the interaction kinetics. We mapped the movement protein coiled-coil to the C terminus of the protein and proved that it self-assembles as a trimer. Immunogold labeling/electron microscopy revealed that the VAP and viral movement protein colocalize on CaMV particles within plasmodesmata. These results highlight the multifunctional potential of the VAP protein conferred by its efficient coiled-coil interaction system and show a plant virus possessing a surface-exposed protein (VAP) mediating viral entry into host cells. movement protein | virion-associated protein | Biacore

  3. Eight channel transmit array volume coil using on-coil radiofrequency current sources

    PubMed Central

    Kurpad, Krishna N.; Boskamp, Eddy B.

    2014-01-01

    Background At imaging frequencies associated with high-field MRI, the combined effects of increased load-coil interaction and shortened wavelength results in degradation of circular polarization and B1 field homogeneity in the imaging volume. Radio frequency (RF) shimming is known to mitigate the problem of B1 field inhomogeneity. Transmit arrays with well decoupled transmitting elements enable accurate B1 field pattern control using simple, non-iterative algorithms. Methods An eight channel transmit array was constructed. Each channel consisted of a transmitting element driven by a dedicated on-coil RF current source. The coil current distributions of characteristic transverse electromagnetic (TEM) coil resonant modes were non-iteratively set up on each transmitting element and 3T MRI images of a mineral oil phantom were obtained. Results B1 field patterns of several linear and quadrature TEM coil resonant modes that typically occur at different resonant frequencies were replicated at 128 MHz without having to retune the transmit array. The generated B1 field patterns agreed well with simulation in most cases. Conclusions Independent control of current amplitude and phase on each transmitting element was demonstrated. The transmit array with on-coil RF current sources enables B1 field shimming in a simple and predictable manner. PMID:24834418

  4. Manufacturing development of the Westinghouse Nb/sub 3/Sn coil for the Large Coil Test Program

    SciTech Connect

    Young, J.L.; Vota, T.L.; Singh, S.K.

    1983-01-01

    The Westinghouse Nb/sub 3/Sn Magnet for the Oak Ridge National Laboratory Large Coil Program (LCP) is currently well into the manufacturing phase. This paper identifies the manufacturing processes and development tasks for his unique, advanced coil.

  5. CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies

    PubMed Central

    Wood, Christopher W.; Bruning, Marc; Ibarra, Amaurys Á.; Bartlett, Gail J.; Thomson, Andrew R.; Sessions, Richard B.; Brady, R Leo; Woolfson, Derek N.

    2014-01-01

    Motivation: The ability to accurately model protein structures at the atomistic level underpins efforts to understand protein folding, to engineer natural proteins predictably and to design proteins de novo. Homology-based methods are well established and produce impressive results. However, these are limited to structures presented by and resolved for natural proteins. Addressing this problem more widely and deriving truly ab initio models requires mathematical descriptions for protein folds; the means to decorate these with natural, engineered or de novo sequences; and methods to score the resulting models. Results: We present CCBuilder, a web-based application that tackles the problem for a defined but large class of protein structure, the α-helical coiled coils. CCBuilder generates coiled-coil backbones, builds side chains onto these frameworks and provides a range of metrics to measure the quality of the models. Its straightforward graphical user interface provides broad functionality that allows users to build and assess models, in which helix geometry, coiled-coil architecture and topology and protein sequence can be varied rapidly. We demonstrate the utility of CCBuilder by assembling models for 653 coiled-coil structures from the PDB, which cover >96% of the known coiled-coil types, and by generating models for rarer and de novo coiled-coil structures. Availability and implementation: CCBuilder is freely available, without registration, at http://coiledcoils.chm.bris.ac.uk/app/cc_builder/ Contact: D.N.Woolfson@bristol.ac.uk or Chris.Wood@bristol.ac.uk PMID:25064570

  6. Computational study for the effects of coil configuration on blood flow characteristics in coil-embolized cerebral aneurysm.

    PubMed

    Otani, Tomohiro; Ii, Satoshi; Shigematsu, Tomoyoshi; Fujinaka, Toshiyuki; Hirata, Masayuki; Ozaki, Tomohiko; Wada, Shigeo

    2016-07-21

    Coil embolization of cerebral aneurysms with inhomogeneous coil distribution leads to an incomplete occlusion of the aneurysm. However, the effects of this factor on the blood flow characteristics are still not fully understood. This study investigates the effects of coil configuration on the blood flow characteristics in a coil-embolized aneurysm using computational fluid dynamics (CFD) simulation. The blood flow analysis in the aneurysm with coil embolization was performed using a coil deployment (CD) model, in which the coil configuration was constructed using a physics-based simulation of the CD. In the CFD results, total flow momentum and kinetic energy in the aneurysm gradually decayed with increasing coil packing density (PD), regardless of the coil configuration attributed to deployment conditions. However, the total shear rate in the aneurysm was relatively high and the strength of the local shear flow varied based on the differences in coil configuration, even at adequate PDs used in clinical practice (20-25 %). Because the sufficient shear rate reduction is a well-known factor in the blood clot formation occluding the aneurysm inside, the present study gives useful insight into the effects of coil configuration on the treatment efficiency of coil embolization.

  7. Flat RF coils in static field gradient nuclear magnetic resonance.

    PubMed

    Stork, H; Gädke, A; Nestle, N; Fujara, F

    2009-10-01

    The use of flat RF coils allows considerable gains in the sensitivity of static field gradient (SFG) nuclear magnetic resonance (NMR) experiments. In this article, this effect is studied theoretically as well as experimentally. Additionally, the flat coil geometry has been studied theoretically depending on magnetic field gradient, pulse sequence and amplifier power. Moreover, detecting the signal directly from the free induction decay (FID) turned out to be quite attractive for STRAFI-like microimaging experiments, especially when using flat coils. In addition to wound rectangular flat coils also spiral flat coils have been developed which can be manufactured by photolithography from printed circuit boards.

  8. Change in the coil distribution of electrodynamic suspension system

    NASA Technical Reports Server (NTRS)

    Tanaka, Hisashi

    1992-01-01

    At the Miyazaki Maglev Test Center, the initial test runs were completed using a system design that required the superconducting coils to be parallel with the ground levitation coils. Recently, the coil distribution was changed to a system such that the two types of coils were perpendicular to each other. Further system changes will lead to the construction of a side wall levitation system. It is hoped that the development will culminate in a system whereby a superconducting coil will maintain all the functions: levitation, propulsion, and guidance.

  9. Superconducting coil system and methods of assembling the same

    DOEpatents

    Rajput-Ghoshal, Renuka; Rochford, James H.; Ghoshal, Probir K.

    2016-01-19

    A superconducting magnet apparatus is provided. The superconducting magnet apparatus includes a power source configured to generate a current; a first switch coupled in parallel to the power source; a second switch coupled in series to the power source; a coil coupled in parallel to the first switch and the second switch; and a passive quench protection device coupled to the coil and configured to by-pass the current around the coil and to decouple the coil from the power source when the coil experiences a quench.

  10. SSC (Superconducting Super Collider) dipole coil production tooling

    SciTech Connect

    Carson, J.A.; Barczak, E.J.; Bossert, R.C.; Brandt, J.S.; Smith, G.A.

    1989-03-01

    Superconducting Super Collider dipole coils must be produced to high precision to ensure uniform prestress and even conductor distribution within the collared coil assembly. Tooling is being prepared at Fermilab for the production of high precision 1M and 16.6M SSC dipole coils suitable for mass production. The design and construction methods builds on the Tevatron tooling and production experience. Details of the design and construction methods and measured coil uniformity of 1M coils will be presented. 4 refs., 10 figs.

  11. The Symmetrical Structure of Structural Maintenance of Chromosomes (SMC) and MukB Proteins: Long, Antiparallel Coiled Coils, Folded at a Flexible Hinge

    PubMed Central

    Melby, Thomas E.; Ciampaglio, Charles N.; Briscoe, Gina; Erickson, Harold P.

    1998-01-01

    Structural maintenance of chromosomes (SMC) proteins function in chromosome condensation and several other aspects of DNA processing. They are large proteins characterized by an NH2-terminal nucleotide triphosphate (NTP)-binding domain, two long segments of coiled coil separated by a hinge, and a COOH-terminal domain. Here, we have visualized by EM the SMC protein from Bacillus subtilis (BsSMC) and MukB from Escherichia coli, which we argue is a divergent SMC protein. Both BsSMC and MukB show two thin rods with globular domains at the ends emerging from the hinge. The hinge appears to be quite flexible: the arms can open up to 180°, separating the terminal domains by 100 nm, or close to near 0°, bringing the terminal globular domains together. A surprising observation is that the ∼300–amino acid–long coiled coils are in an antiparallel arrangement. Known coiled coils are almost all parallel, and the longest antiparallel coiled coils known previously are 35–45 amino acids long. This antiparallel arrangement produces a symmetrical molecule with both an NH2- and a COOH-terminal domain at each end. The SMC molecule therefore has two complete and identical functional domains at the ends of the long arms. The bifunctional symmetry and a possible scissoring action at the hinge should provide unique biomechanical properties to the SMC proteins. PMID:9744887

  12. Experimental development of a petal resonator surface coil.

    PubMed

    Rodríguez, Alfredo Odon; Hidalgo, Sandra Silvia; Rojas, Rafael; Barrios, Fernando Alejandro

    2005-12-01

    A surface coil for MRI was designed and built based on the principles of the petal resonator proposed by Mansfield [J Phys D Appl Phys 21 (1988) 1643]. This resonator coil design was named the petal resonator surface (PERES) coil and is composed of an eight-petal coil array and a central circular coil. A minimum separation of three times the petal coil radius is necessary to significantly decrease the mutual inductance. An analytical function for the PERES Signal-to-noise ratio (SNR) is obtained based on the quasistatic method. Theoretical plots of SNR enhancement yielded 26% and 35% more SNR over the circular coil and phased-array coils. Imaging experiments were first performed using a spectroscopy phantom on a 1.5-T commercial imager. Subsequently, brain images of healthy volunteers were obtained. Clinical MR imager compatibility allows this resonator coil to be used with conventional pulse sequences and imaging protocols. This coil design offers a new alternative to existing surface coils because it significantly increases the SNR.

  13. FIRST 100 T NON-DESTRUCTIVE MAGNET OUTER COIL SET

    SciTech Connect

    J. BACON; A. BACA; ET AL

    1999-09-01

    The controlled power outer coil set of the first 100 T non-destructive (100 T ND) magnet is described. This magnet will be installed as part of the user facility research equipment at the National High Magnetic Field laboratory (NHMFL) Pulsed Field Facility at Los Alamos National Laboratory. The 100 T ND controlled power outer coil set consists of seven nested, mechanically independent externally reinforced coils. These coils, in combination, will produce a 47 T platform field in a 225-mm diameter bore. Using inertial energy storage a synchronous motor/generator provides ac power to a set of seven ac-dc converters rated at 64 MW/80 MVA each. These converters energize three independent coil circuits to create 170 MJ of field energy in the outer coil set at the platform field of 47 T. Each coil consists of a multi-layer winding of high strength conductor supported by an external high strength stainless steel shell. Coils with the highest magnetic loads will utilize a reinforcing shell fabricated from highly cold worked 301 stainless steel strip. The autofrettage conditioning method will be used to pre-stress the coils and thereby limit conductor and reinforcement strains to the elastic range. The purpose of pre-stressing the coils is to attain a design life of 10,000 full field pulses. The operation and conditioning of the coil set will be described along with special features of its design, magnetic and structural analyses and construction.

  14. Study on cross section of high temperature superconducting coil

    NASA Astrophysics Data System (ADS)

    Ishiguri, Shinichi; Yamaguchi, Mitsugi; Fukui, Satoshi; Ogawa, Jun; Sato, Takao

    2007-01-01

    It is in particular of importance for HTS coils to secure a larger central magnetic field and/or a large stored energy with shorter length of HTS tapes. The critical current of an HTS tape depends on both the flux density and the flux angle against tapes. From this point, the performance improvement of HTS coils is taken into account with an analytical model. The minimum volume coil derived from the Fabry Factor constant curve is taken concerning the original coil shape, which is often employed in low temperature superconducting coils. The coil critical current was analyzed in consideration of the anisotropic properties of the tape. The electric field of HTS tapes in the coil was calculated at the coil critical current and the high electric field portion were cut out. The optimal coil cross section is obtained by iterating this calculation process. As a result, the critical current and the stored energy density of the coil were improved. The stored energy density increased about 17% and the central magnetic field was almost kept constant regardless of 19% reduction of HTS tapes, as compared with the original coil with the rectangular cross section.

  15. Elliptical Muon Helical Cooling Channel Coils

    SciTech Connect

    Kahn, S. A.; Flanagan, G.; Lopes, M. L.; Yonehara, K.

    2013-09-01

    A helical cooling channel (HCC) consisting of a pressurized gas absorber imbedded in a magnetic channel that provides solenoid, helical dipole and helical quadrupole fields has shown considerable promise in providing six-dimensional phase space reduction for muon beams. The most effective approach to implementing the desired magnetic field is a helical solenoid (HS) channel composed of short solenoid coils arranged in a helical pattern. The HS channel along with an external solenoid allows the B$_z$ and B$_{\\phi}$ components along the reference orbit to be set to any desired values. To set dB$_{\\phi}$/dr to the desired value for optimum focusing requires an additional variable to tune. We shall show that using elliptical shaped coils in the HS channel allows the flexibility to achieve the desired dB$_{\\phi}$/dr on the reference orbit without significant change to B$_z$ and B$_{\\phi}$.

  16. Coiled tubing applications for underground gas storage

    SciTech Connect

    Fowler, H.; Holcombe, D.

    1994-12-31

    Technological advances in coiled tubing (CT), CT handling equipment, and application techniques have provided new opportunities for the effective, economic use of CT for gas storage and retrieval. This paper presents a review of the CT capabilities that can be used for improving the performance of gas storage wells and discusses applications that could be performed with CT in the near future. For more than 25 years, coiled tubing has been use as an effective, economic means of performing remedial well services. In response to the demand for better horizontal drilling equipment, the strength and diameter of CT has been increased, while surface equipment and downhole tools have become more sophisticated. CT is also widely used in well servicing after initial completion, especially since declining oil prices have made it imperative that operators find more cost-effective methods of increasing production and reducing maintenance costs. The gas storage industry can effectively take advantage of the many recent advancements in CT technology.

  17. Magnetically Damped Furnace Bitter Magnet Coil 1

    NASA Technical Reports Server (NTRS)

    Bird, M. D.

    1997-01-01

    A magnet has been built by the National High Magnetic Field Laboratory for NASA on a cost reimbursement contract. The magnet is intended to demonstrate the technology and feasibility of building a magnet for space based crystal growth. A Bitter magnet (named after Francis Bitter, its inventor) was built consisting of four split coils electrically in series and hydraulically in parallel. The coils are housed in a steel vessel to reduce the fringe field and provide some on-axis field enhancement. The steel was nickel plated and Teflon coated to minimize interaction with the water cooling system. The magnet provides 0.14 T in a 184 mm bore with 3 kW of power.

  18. Theory of the quadrature elliptic birdcage coil.

    PubMed

    Leifer, M C

    1997-11-01

    This paper presents the theory of the quadrature birdcage coil wound on an elliptic cylindrical former. A conformal transformation of the ellipse to a circular geometry is used to derive the optimal sampling of the continuous surface current distribution to produce uniform magnetic fields within an elliptic cylinder. The analysis is rigorous for ellipses of any aspect ratio and shows how to produce quadrature operation of the elliptic birdcage with a conventional hybrid combiner. Insight gained from the transformation is also used to analyze field homogeneity, find the optimal RF shield shape, and specify component values to produce the correct current distribution in practice. Measurements and images from a 16-leg elliptic birdcage coil at both low and high frequencies show good quadrature performance, homogeneity, and sensitivity.

  19. Common Coil Magnet System for VLHC

    SciTech Connect

    Gupta, R.

    1999-02-12

    This paper introduces the common coil magnet system for the proposed very large hadron collider (VLHC). In this system, the high energy booster (HEB), the injector to VLHC, is integrated as the iron dominated low field aperture within the coldmass of the common coil magnet design introduced earlier. This 4-in-1 magnet concept for a 2-in-1 machine should provide a major cost reduction in building and operating VLHC. Moreover, the proposed design reduces the field quality problems associated with the large persistent currents in Nb{sub 3}Sn magnets. The paper also shows that the geometric field harmonics can be made small. In this preliminary magnetic design. the current dependence in harmonics is significant but not umnanageable.

  20. Simulation calculation and characteristics analysis of coil motion noise

    NASA Astrophysics Data System (ADS)

    Meng, Yang; Peng, Cong; Fu, MingYe; Lu, Yiming; Yu, Zining; Zhu, Kaiguang

    2017-01-01

    Coil motion noise is one of the largest noises in airborne electromagnetic exploration, which results from the variations of magnetic flux in the Earth's magnetic accompanied by the receiver coil's movement during the flight. On the assumption of attitude measurements, coil motion noise is calculated according to roll, pitch and yaw of the receiver coils. Therefore, the characteristics of coil motion noise are analyzed in time domain, frequency domain and time-frequency domain. And the Gaussianity of coil motion noise is also discussed using the histogram of data and its estimated Gaussian function, and another method termed normal probability paper. All of these are to lay the foundation for removal of coil motion noise in airborne electromagnetic detection.

  1. Arrays of mutually coupled receiver coils: theory and application.

    PubMed

    Wright, S M; Magin, R L; Kelton, J R

    1991-01-01

    Specialized receiver coils having a small sensitive region can provide an improvement in SNR for MR imaging and spectroscopy, at the expense of limiting the usable field of view. This work presents a technique for designing coil arrays that allows the size and location of the sensitive region to be selected remotely. Only one element of the coil array is directly connected to the receiver, allowing flexibility in system design and implementation. A method is presented for the analysis and design of mutually coupled coil arrays of any number of elements of arbitrary shape. The analysis includes mutual coupling effects between primary coils, to allow multiple primary coils to be used simultaneously. A controller system allows remote selection of the sensitive region and automatically matches the impedance of the array to the preamplifier. Results obtained using a mutually coupled coil array designed for spine imaging are shown.

  2. Coiled tubing 1994 update: Expanding applications

    SciTech Connect

    Teel, M.E.

    1994-06-01

    The coiled tubing (CT) resurgence, which began in late 1989 shows little sign of moderating in spite of lower oil and gas prices. In fact, this so-called revolution continues to expand into major new services and applications. CT units are replacing workover rigs and snubbing units in some areas and have recently started to replace drilling rigs even outside Alaska's North Slope Prudhoe Bay field. Activity is reaching record levels in many areas. Although drilling, completions and flowlines generate a lot of interest, these are currently only a small part of total CT business. About 75% of activity is split evenly between nitrogen, acidizing and cleanouts. The other 25% includes newer services like cementing, fishing, sliding sleeves, logging, underreaming to remove scale or cement and drilling. CT is used to drill slimholes and reentry drainholes up to 6 1/8-in. CT has been used as casing and more casing applications are planned. CT ODs to 3 1/2-in. are produced and 4 1/2-in. OD CT production is scheduled later this year. Larger ODs make CT feasible for replacing conventional jointed tubing and welded flowlines.

  3. Choice of coils for a fusion reactor

    PubMed Central

    Alexander, Romeo; Garabedian, Paul R.

    2007-01-01

    In a fusion reactor a hot plasma of deuterium and tritium is confined by a strong magnetic field to produce helium ions and release energetic neutrons. The 3D geometry of a stellarator provides configurations for such a device that reduce net toroidal current that might lead to disruptions. We construct smooth coils generating an external magnetic field designed to prevent the plasma from deteriorating. PMID:17640879

  4. Acute lung injury following refrigeration coil deicing.

    PubMed

    McKeown, Nathanael J; Burton, Brent T

    2012-03-01

    We report a case of a worker who developed ALI requiring mechanical ventilatory support after attempting to melt ice condensate by applying the flame of an oxy-acetylene torch to refrigeration coils charged with a halocarbon refrigerant in a closed environment. A discussion of possible etiologies are discussed, including phosgene, carbonyl fluoride, and nitrogen oxides. Primary prevention with adequate respiratory protection is recommended whenever deicing is performed in a closed space environment.

  5. A new moving-coil microelectrode puller.

    PubMed

    Ensor, D R

    1979-03-01

    This paper describes an improved electrode puller for the manufacture of glass microelectrodes or micropipettes. The instrument resembles a conventional horizontal two-stage, solenoid-powered electrode puller but the pull is now developed by a light moving-coil and a fixed permanent magnet, using the principle of the moving-coil loudspeaker. In a conventional puller the force is generated by a solenoid with a massive moving-iron core. In this new puller the moving-coil solenoid responds much more rapidly to changing currents because of its greatly reduced inductance, and a substantial reduction in mass to 25 g, gives more acceleration from a comparable force. The sudden discharge of a capacitor bank through the coil accelerates the glass quickly during the last stage of the pull. This rapid acceleration is of importance in the formation of good electrodes with fine tips. For the prototype, an electronic control unit was constructed which allows the parameters necessary for the manufacture of electrodes to be set and regulated accurately and repeatedly, so that series of electrodes of constant shapes can be made. The length of the electrode shank may be predetermined over a wide range and tip diameters down to 0.08 micron have already been measured. The angle of the taper that supports the tip may be varied from less than 1 to over 6 degrees. The mechanical design of the instrument is comparatively simple, as it has only one moving part, while the relative complexity of the electronic control section should not present any manufacturing difficulties. Although this puller has been used mainly to make single-barrel fine electrodes from borosilicate glass, it is adaptable for other purposes. The extent of the control over the shape of the shank of the electrode renders it particularly suitable for the manufacture of composite, ion-sensitive electrodes.

  6. Mechanical Resonances of Helically Coiled Carbon Nanowires

    PubMed Central

    Saini, D.; Behlow, H.; Podila, R.; Dickel, D.; Pillai, B.; Skove, M. J.; Serkiz, S. M.; Rao, A. M.

    2014-01-01

    Despite their wide spread applications, the mechanical behavior of helically coiled structures has evaded an accurate understanding at any length scale (nano to macro) mainly due to their geometrical complexity. The advent of helically coiled micro/nanoscale structures in nano-robotics, nano-inductors, and impact protection coatings has necessitated the development of new methodologies for determining their shear and tensile properties. Accordingly, we developed a synergistic protocol which (i) integrates analytical, numerical (i.e., finite element using COMSOL®) and experimental (harmonic detection of resonance; HDR) methods to obtain an empirically validated closed form expression for the shear modulus and resonance frequency of a singly clamped helically coiled carbon nanowire (HCNW), and (ii) circumvents the need for solving 12th order differential equations. From the experimental standpoint, a visual detection of resonances (using in situ scanning electron microscopy) combined with HDR revealed intriguing non-planar resonance modes at much lower driving forces relative to those needed for linear carbon nanotube cantilevers. Interestingly, despite the presence of mechanical and geometrical nonlinearities in the HCNW resonance behavior the ratio of the first two transverse modes f2/f1 was found to be similar to the ratio predicted by the Euler-Bernoulli theorem for linear cantilevers. PMID:24986377

  7. Carbon footprint of automotive ignition coil

    NASA Astrophysics Data System (ADS)

    Chang, Huey-Ling; Chen, Chih-Ming; Sun, Chin-Huang; Lin, Hung-Di

    2015-07-01

    In recent years, environmental issues, such as climate change and global warming due to the excessive development of industry, have attracted increasing attention of citizens worldwide. It is known that CO2 accounts for the largest proportion of greenhouse gases. Therefore, how to reduce CO2 emissions during the life cycle of a product to lessen its impact on environment is an important topic in the industrial society. Furthermore, it is also of great significance to cut down the required energy so as to lower its production costs during the manufacturing process nowadays. This study presents the carbon footprint of an automotive ignition coil and its partial materials are defined to explore their carbon emissions and environmental impact. The model IPCC GWP100a calculates potential global greenhouse effect by converting them into CO2 equivalents. In this way, the overall carbon footprint of an ignition coil can be explored. By using IPCC GWP100a, the results display that the shell has the most carbon emissions. The results can help the industry reduce the carbon emissions of an ignition coil product.

  8. Throttle coil operation of TMX-U

    SciTech Connect

    Correll, D.L.; Byers, J.A.; Casper, T.A.

    1983-01-01

    A tandem-mirror configuration with an axisymmetric central cell, similar to the geometry of MARS (Mirror Advanced Reactor Study) or the Kelley-TDF mode of MFTB-B, can be generated by inserting a 6-tesla, throttle coil in each end of the TMX-U central cell. The throttle coil geometry of TMX-U will test the physics issues associated with axisymmetric tandem-mirror reactors, such issues as: (1) increased radial confinement time for central-cell ions confined by axisymmetric mirror cells and electrostatic potentials; (2) theoretical limits set by the trapped particle instability for the required passing density between the central cell and the end-cell anchor; and (3) pumping of trapped particles within the thermal barrier and transition regions with methods other than neutral beams. The central-cell plasma parameters for the throttle coil geometry are evaluated for two operating points. The first requires heating hardware (neutral beams and ECRH) and vacuum performance at the TMX-U proposal level, yielding plasma parameters, central-cell betas, and plasma confinement exceeding those of the original TMX-U proposal. The second operating point, requiring approximately half the ECRH end-cell performance of the first, is predicted to equal the beta and to exceed the plasma pressure and confinement time of the central cell in the standard TMX-U geometry.

  9. Mechanical resonances of helically coiled carbon nanowires.

    PubMed

    Saini, D; Behlow, H; Podila, R; Dickel, D; Pillai, B; Skove, M J; Serkiz, S M; Rao, A M

    2014-07-02

    Despite their wide spread applications, the mechanical behavior of helically coiled structures has evaded an accurate understanding at any length scale (nano to macro) mainly due to their geometrical complexity. The advent of helically coiled micro/nanoscale structures in nano-robotics, nano-inductors, and impact protection coatings has necessitated the development of new methodologies for determining their shear and tensile properties. Accordingly, we developed a synergistic protocol which (i) integrates analytical, numerical (i.e., finite element using COMSOL) and experimental (harmonic detection of resonance; HDR) methods to obtain an empirically validated closed form expression for the shear modulus and resonance frequency of a singly clamped helically coiled carbon nanowire (HCNW), and (ii) circumvents the need for solving 12th order differential equations. From the experimental standpoint, a visual detection of resonances (using in situ scanning electron microscopy) combined with HDR revealed intriguing non-planar resonance modes at much lower driving forces relative to those needed for linear carbon nanotube cantilevers. Interestingly, despite the presence of mechanical and geometrical nonlinearities in the HCNW resonance behavior the ratio of the first two transverse modes f₂/f₁ was found to be similar to the ratio predicted by the Euler-Bernoulli theorem for linear cantilevers.

  10. Mechanical Resonances of Helically Coiled Carbon Nanowires

    NASA Astrophysics Data System (ADS)

    Saini, D.; Behlow, H.; Podila, R.; Dickel, D.; Pillai, B.; Skove, M. J.; Serkiz, S. M.; Rao, A. M.

    2014-07-01

    Despite their wide spread applications, the mechanical behavior of helically coiled structures has evaded an accurate understanding at any length scale (nano to macro) mainly due to their geometrical complexity. The advent of helically coiled micro/nanoscale structures in nano-robotics, nano-inductors, and impact protection coatings has necessitated the development of new methodologies for determining their shear and tensile properties. Accordingly, we developed a synergistic protocol which (i) integrates analytical, numerical (i.e., finite element using COMSOL®) and experimental (harmonic detection of resonance; HDR) methods to obtain an empirically validated closed form expression for the shear modulus and resonance frequency of a singly clamped helically coiled carbon nanowire (HCNW), and (ii) circumvents the need for solving 12th order differential equations. From the experimental standpoint, a visual detection of resonances (using in situ scanning electron microscopy) combined with HDR revealed intriguing non-planar resonance modes at much lower driving forces relative to those needed for linear carbon nanotube cantilevers. Interestingly, despite the presence of mechanical and geometrical nonlinearities in the HCNW resonance behavior the ratio of the first two transverse modes f2/f1 was found to be similar to the ratio predicted by the Euler-Bernoulli theorem for linear cantilevers.

  11. Single coil bistable, bidirectional micromechanical actuator

    DOEpatents

    Tabat, Ned; Guckel, Henry

    1998-09-15

    Micromechanical actuators capable of bidirectional and bistable operation can be formed on substrates using lithographic processing techniques. Bistable operation of the microactuator is obtained using a single coil and a magnetic core with a gap. A plunger having two magnetic heads is supported for back and forth linear movement with respect to the gap in the magnetic core, and is spring biased to a neutral position in which the two heads are on each side of the gap in the core. The single electrical coil is coupled to the core and is provided with electrical current to attract one of the heads toward the core by reluctance action to drive the plunger to a limit of travel in one direction. The current is then cut off and the plunger returns by spring action toward the gap, whereafter the current is reapplied to the coil to attract the other head of the plunger by reluctance action to drive the plunger to its other limit of travel. This process can be repeated at a time when switching of the actuator is required.

  12. Double tube helical coil steam generator

    SciTech Connect

    Garabedian, G.; De Luca, R.A.

    1987-02-24

    A steam generator is described comprising a container having a closed lower end, divided into longitudinally arranged sections including an uppermost disengaging chamber, an upper plenum, and a lower plenum. The upper plenum is above the lower plenum and contains a multiplicity of double tube helical coils, wherein each of the double tube helical coils is comprised of an inner tube individually enclosed for at least a portion of its length by an outer tube to form a double tube portion and thereby define an annular gap which is outside the inner tube but enclosed by the outer tube; the inner tube being attached at one end to a feedwater inlet, and the inner tube being attached at the other end to a steam outlet; the outer tube being in open communication at both ends with the disengaging chamber; the double tube portion being in the configuration of a helix for part of its length; the upper plenum having no communication with the disengaging chamber and having restricted communication with the lower plenum such that liquid metal entering the upper plenum and flowing to the lower plenum closely contacts at least a portion of the double tube helical coils; and the annular gap being at least partially filled with liquid metal.

  13. Coiling of elastic rods on rigid substrates

    PubMed Central

    Jawed, Mohammad K.; Da, Fang; Joo, Jungseock; Grinspun, Eitan; Reis, Pedro M.

    2014-01-01

    We investigate the deployment of a thin elastic rod onto a rigid substrate and study the resulting coiling patterns. In our approach, we combine precision model experiments, scaling analyses, and computer simulations toward developing predictive understanding of the coiling process. Both cases of deposition onto static and moving substrates are considered. We construct phase diagrams for the possible coiling patterns and characterize them as a function of the geometric and material properties of the rod, as well as the height and relative speeds of deployment. The modes selected and their characteristic length scales are found to arise from a complex interplay between gravitational, bending, and twisting energies of the rod, coupled to the geometric nonlinearities intrinsic to the large deformations. We give particular emphasis to the first sinusoidal mode of instability, which we find to be consistent with a Hopf bifurcation, and analyze the meandering wavelength and amplitude. Throughout, we systematically vary natural curvature of the rod as a control parameter, which has a qualitative and quantitative effect on the pattern formation, above a critical value that we determine. The universality conferred by the prominent role of geometry in the deformation modes of the rod suggests using the gained understanding as design guidelines, in the original applications that motivated the study. PMID:25267649

  14. The coiling of electrified liquid jets

    NASA Astrophysics Data System (ADS)

    Rivero Rodriguez, Javier; Pérez-Saborid, Miguel

    2013-11-01

    We have carried out a numerical study of the coiling regime which takes place when an electrified liquid jet issuing from an orifice drilled in a metal plate electrode reaches the counter electrode. Based on the slenderness assumption, we have derived the set of one-dimensional dynamical equations by averaging the underlying balance laws over the jet cross sections (Cosserat rod model). Therefore, our equations and boundary conditions are related to those obtained by N.M. Ribe (Ann. Rev Fluid Mech., 2012) for the coiling of liquid ropes, but including electrostatic effects. In a first approach, we have simplified the electrical terms entering the problem by assuming a constant external electric field between electrodes, and that the charges are convected by the jet surface interacting electrostatically with each other via the local interaction approximation (Yarin et al., 2001). We have numerically investigated the problem in order to analize how the coiling regime depends on the dimensionless parameters of the problem, i.e., the Reynolds number, the electrical Bond number and the capillary number. In particular, we have found that both the displacement of the centerline of the jet and its cross-sectional stretching greatly depend on the electrostatic effects. Thanks to the MINECO (Spain) for partial support under grant DPI2010-20450-C03-02.

  15. Numerical dosimetry of transcranial magnetic stimulation coils

    NASA Astrophysics Data System (ADS)

    Crowther, Lawrence; Hadimani, Ravi; Jiles, David

    2014-03-01

    Transcranial magnetic stimulation (TMS) is a non-invasive neuromodulation technique capable of stimulating neurons by means of electromagnetic induction. TMS can be used to map brain function and shows promise for the diagnosis and treatment of neurological and psychiatric disorders. Calculation of fields induced in the brain are necessary to accurately identify stimulated neural tissue during TMS. This allows the development of novel TMS coil designs capable of stimulating deeper brain regions and increasing the localization of stimulation that can be achieved. We have performed numerical calculations of magnetic and electric field with high-resolution anatomically realistic human head models to find these stimulated brain regions for a variety of proposed TMS coil designs. The realistic head models contain heterogeneous tissue structures and electrical conductivities, yielding superior results to those obtained from the simplified homogeneous head models that are commonly employed. The attenuation of electric field as a function of depth in the brain and the localization of stimulating field have been methodically investigated. In addition to providing a quantitative comparison of different TMS coil designs the variation of induced field between subjects has been investigated. We also show the differences in induced fields between adult, adolescent and child head models to preemptively identify potential safety issues in the application of pediatric TMS.

  16. Theta Pinch Coil Design for SSX

    NASA Astrophysics Data System (ADS)

    Shrock, J. E.; Han, J.; Kaur, M.; Brown, M. R.; Schaffner, D. A.

    2016-10-01

    We present the essential physics and design parameters behind a theta pinch coil used on SSX. The coil is used as an accelerator to drive flux behind a Taylor plume traveling about 30 km/sec. Operating between 25 and 40 kV on a time scale < 10 μs , the design focuses on minimizing the quarter cycle rise time (π/2√{ LC }) of the coil while maintaining the necessary precautions for working at high voltage. Our design works with 1.1 and 3.3 μF capacitors and a maximum stored electrical energy of U =1/2 CV2 = 880 J (at the lower capacitance). This electrical energy is converted into kinetic energy in the plume. Each plume has a mass greater than 30 μg , giving an initial kinetic energy of at least 14 J . At perfect efficiency, the upper bound of the plume velocity will be 240 km/sec using the lower capacitance circuit. Work supported by DOE OFES and ARPA-E ALPHA programs.

  17. Microinjection of Anti-coilin Antibodies Affects the Structure of Coiled Bodies

    PubMed Central

    Almeida, Fátima; Saffrich, Rainer; Ansorge, Wilhelm; Carmo-Fonseca, Maria

    1998-01-01

    The coiled body is a distinct subnuclear domain enriched in small nuclear ribonucleoprotein particles (snRNPs) involved in processing of pre-mRNA. Although the function of the coiled body is still unknown, current models propose that it may have a role in snRNP biogenesis, transport, or recycling. Here we describe that anti-coilin antibodies promote a specific disappearance of the coiled body in living human cells, thus providing a novel tool for the functional analysis of this structure. Monoclonal antibodies (mAbs) were raised against recombinant human coilin, the major structural protein of the coiled body. Four mAbs are shown to induce a progressive disappearance of coiled bodies within ∼6 h after microinjection into the nucleus of HeLa cells. After their disappearance, coiled bodies are not seen to re-form, although injected cells remain viable for at least 3 d. Epitope mapping reveals that the mAbs recognize distinct amino acid motifs scattered along the complete coilin sequence. By 24 and 48 h after injection of antibodies that promote coiled body disappearance, splicing snRNPs are normally distributed in the nucleoplasm, the nucleolus remains unaffected, and the cell cycle progresses normally. Furthermore, cells devoid of coiled bodies for ∼24 h maintain the ability to splice both adenoviral pre-mRNAs and transiently overexpressed human β-globin transcripts. In conclusion, within the time range of this study, no major nuclear abnormalities are detected after coiled body disappearance. PMID:9722604

  18. Theoretical design of gradient coils with minimum power dissipation: Accounting for the discretization of current density into coil windings

    NASA Astrophysics Data System (ADS)

    While, Peter T.; Korvink, Jan G.; Shah, N. Jon; Poole, Michael S.

    2013-10-01

    Gradient coil windings are typically constructed from either variable width copper tracks or fixed width wires. Excessive power dissipation within these windings during gradient coil operation limits the maximum drive current or duty cycle of the coil. It is common to design gradient coils in terms of a continuous minimum power current density and to perform a discretization to obtain the locations of the coil tracks or wires. However, the existence of finite gaps between these conductors and a maximum conductor width leads to an underestimation of coil resistance when calculated using the continuous current density. Put equivalently, the actual current density within the tracks or wires is higher than that used in the optimization and this departure results in suboptimal coil designs. In this work, a mapping to an effective current density is proposed to account for these effects and provide the correct contribution to the power dissipation. This enables the design of gradient coils that are genuinely optimal in terms of power minimization, post-discretization. The method was applied to the theoretical design of a variety of small x- and z-gradient coils for use in small animal imaging and coils for human head imaging. Computer-driven comparisons were made between coils designed with and without the current density mapping, in terms of simulated power dissipation. For coils to be built using variable width tracks, the method provides slight reductions in power dissipation in most cases and substantial gains only in cases where the minimum separation between track centre-lines is less than twice the gap size. However, for coils to be built using fixed width wires, very considerable reductions in dissipated power are consistently attainable (up to 60%) when compared to standard approaches of coil optimization.

  19. Protein-based hydrogels self-assembled from genetically engineered triblock polypeptides containing coiled-coil domains

    NASA Astrophysics Data System (ADS)

    Xu, Chunyu

    Protein-based biomaterials have great potential in biomedical applications due to their similar composition with biological organisms. Environment-sensitive hydrogels based on proteins can undergo sol-gel transition due to the conformational change of the proteins in response to external stimuli. The physical properties of these hydrogels can be tailored by modification of the protein structures. Two major hypotheses were made in this dissertation. One was that coiled-coil folding motifs could be a good candidate for physical crosslinking in protein-based hydrogels, and the other was that the conformational change of coiled-coils in response to external stimuli could mediate the sol-gel transition of the protein-based hydrogels. The first part established synthesis strategies of the coiled-coil containing proteins using a genetic engineering technique. An important observation was made that the fusion sequence on the proteins could influence the thermal stability of the proteins. In the second part of the research, the self-assembly of hydrogels from a series of triblock polypeptides containing coiled-coils was evaluated. It was found that the hydrogels had a porous interconnected network microstructure. The hydrogels responded to temperature and pH, which correlated to the temperature- and pH-triggered structural transition of the coiled-coil domains. In addition, the formation of hydrogels was reversible in the present or absence of guanidine hydrochloride (GdnHCl). The last part of the research attempted to explore the relationship between the structure of the protein polymers and the physical property of the hydrogels, and to investigate the parameters influencing the hydrogel formation and physical properties. Triblock and diblock polypeptides were designed to contain different lengths of coiled-coil domains. Tyrosine residues were incorporated at selected solvent-exposed positions in order to increase the hydrophobicity of the coiled-coil domains. The

  20. Variants of the Sir4 Coiled-Coil Domain Improve Binding to Sir3 for Heterochromatin Formation in Saccharomyces cerevisiae.

    PubMed

    Samel, Anke; Rudner, Adam; Ehrenhofer-Murray, Ann E

    2017-04-03

    Heterochromatin formation in the yeast Saccharomyces cerevisiae is characterized by the assembly of the Silent Information Regulator (SIR) complex, which consists of the histone deacetylase Sir2 and the structural components Sir3 and Sir4, and binds to unmodified nucleosomes to provide gene silencing. Sir3 contains an AAA(+) ATPase-like domain, and mutations in an exposed loop on the surface of this domain abrogate Sir3 silencing function in vivo, as well in vitro binding to the Sir2/Sir4 subcomplex. Here, we found that the removal of a single methyl group in the C-terminal coiled-coil domain (mutation T1314S) of Sir4 was sufficient to restore silencing at the silent mating-type loci HMR and HML to a Sir3 version with a mutation in this loop. Restoration of telomeric silencing required further mutations of Sir4 (E1310V and K1325R). Significantly, these mutations in Sir4 restored in vitro complex formation between Sir3 and the Sir4 coiled-coil, indicating that the improved affinity between Sir3 and Sir4 is responsible for the restoration of silencing. Altogether, these observations highlight remarkable properties of selected amino-acid changes at the Sir3-Sir4 interface that modulate the affinity of the two proteins.

  1. NMR assignment and secondary structure of coiled coil domain of C-terminal myosin binding subunit of myosin phosphatase.

    PubMed

    Sharma, Alok K; Rigby, Alan C

    2014-07-01

    Protein-protein interactions between the C-terminal domain of Myosin Binding Subunit (MBS) of MLC Phosphatase (MBS(CT180); C-terminal 180 aa) and the N-terminal coiled coil (CC) leucine zipper (LZ) domain of PKGIα, PKG-Iα(1-159) play an important role in the process of Smooth Muscle Cell relaxation. The paucity of three-dimensional structural information for MBS(CT180) prevents an atomic level understanding of the MBS-PKG contractile complex. MBS(CT180) is comprised of three structurally different sub-domains including a non-canonical CC, a CC, and a LZ. Recently we reported polypeptide purification and biophysical characterization of the CC domain and the LZ domain of MBS(CT180) (Sharma et al, Prot Expr Purif 2012). Here we report (1)H, (13)C, (15)N chemical shift assignments of homodimeric CC MBS domain encompassing amino acid residues Asp931-Leu980 using 2D and 3D heteronuclear NMR spectroscopy. Secondary structure analyses deduced from these NMR chemical shift data have identified a contiguous stretch of 36 residues from Phe932 to Ala967 that is involved in the formation of coiled coil α-helical region within CC MBS domain. The N-terminal residue Asp931 and the C-terminally positioned residues Thr968-Ala975, Arg977, and Ser978 adopt nonhelical loop conformations.

  2. Variants of the Sir4 Coiled-Coil Domain Improve Binding to Sir3 for Heterochromatin Formation in Saccharomyces cerevisiae

    PubMed Central

    Samel, Anke; Rudner, Adam; Ehrenhofer-Murray, Ann E.

    2017-01-01

    Heterochromatin formation in the yeast Saccharomyces cerevisiae is characterized by the assembly of the Silent Information Regulator (SIR) complex, which consists of the histone deacetylase Sir2 and the structural components Sir3 and Sir4, and binds to unmodified nucleosomes to provide gene silencing. Sir3 contains an AAA+ ATPase-like domain, and mutations in an exposed loop on the surface of this domain abrogate Sir3 silencing function in vivo, as well in vitro binding to the Sir2/Sir4 subcomplex. Here, we found that the removal of a single methyl group in the C-terminal coiled-coil domain (mutation T1314S) of Sir4 was sufficient to restore silencing at the silent mating-type loci HMR and HML to a Sir3 version with a mutation in this loop. Restoration of telomeric silencing required further mutations of Sir4 (E1310V and K1325R). Significantly, these mutations in Sir4 restored in vitro complex formation between Sir3 and the Sir4 coiled-coil, indicating that the improved affinity between Sir3 and Sir4 is responsible for the restoration of silencing. Altogether, these observations highlight remarkable properties of selected amino-acid changes at the Sir3-Sir4 interface that modulate the affinity of the two proteins. PMID:28188183

  3. An engineered right-handed coiled coil domain imparts extreme thermostability to the KcsA channel.

    PubMed

    Yuchi, Zhiguang; Pau, Victor P T; Lu, Bridget X; Junop, Murray; Yang, Daniel S C

    2009-11-01

    KcsA, a potassium channel from Streptomyces lividans, was the first ion channel to have its transmembrane domain structure determined by crystallography. Previously we have shown that its C-terminal cytoplasmic domain is crucial for the thermostability and the expression of the channel. Expression was almost abolished in its absence, but could be rescued by the presence of an artificial left-handed coiled coil tetramerization domain GCN4. In this study, we noticed that the handedness of GCN4 is not the same as the bundle crossing of KcsA. Therefore, a compatible right-handed coiled coil structure was identified from the Protein Data Bank and used to replace the C-terminal domain of KcsA. The hybrid channel exhibited a higher expression level than the wild-type and is extremely thermostable. Surprisingly, this stable hybrid channel is equally active as the wild-type channel in conducting potassium ions through a lipid bilayer at an acidic pH. We suggest that a similar engineering strategy could be applied to other ion channels for both functional and structural studies.

  4. TEM transmission line coil with double nuclear capability.

    PubMed

    Erickson, Matthew G; Kurpad, Krishna N; Holmes, James H; Fain, Sean B

    2007-10-01

    MR imaging and spectroscopy requires RF fields of high homogeneity. Quadrature volume coils meeting this requirement include the birdcage coil and the TEM resonator. We describe here a quadrature volume coil designed around a modified coaxial transmission line in which multiple inner conductors are arrayed on a circular perimeter and surrounded by a common shield. Current antinodes are established at appropriate points on the inner conductors by series transmission line stubs, either open circuit or short circuit, which terminate the line. Quadrature phasing is generated by a novel circuit constructed from a pair of high-performance current baluns and a commercial quadrature hybrid. The coil is a "pure" TEM coil as it is simply a resonant transmission line. There is no mode structure to consider. The construction of a prototype quadrature four-element coil is described and preliminary test results from this coil in a 4.7T horizontal bore magnet are reported. A related double nuclear coil design for (3)He and (1)H in which two linear transmission line coils are arrayed on a circular perimeter and simultaneously tuned and matched to their respective frequencies is also described. Preliminary tests from this coil in a 1.5T clinical scanner are reported.

  5. Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation.

    PubMed

    Serrano, L

    1995-11-24

    It has been indicated that amino acids have various intrinsic phi and psi propensities, as demonstrated from the comparison between experimental secondary structure propensities and their relative statistical distribution in the protein database for the appropriate region of the Ramachandran plot. However, this does not eliminate the possibility that these experimental propensities are the result of context effects due to the secondary structure environment of the mutated position. To demonstrate that there are at least real intrinsic phi propensities, independent of context effects, we have used two different nuclear magnetic resonance parameters related to the phi dihedral angle (J3 alpha HN coupling constants and the chemical shift of the C alpha H proton), determined in random-coil tetra- and pentapeptides, and/or in proteins. Comparison of the experimentally determined values for these parameters with the theoretical ones determined from the analysis by different empirical and theoretical equations of the phi dihedral angle statistical distribution of the amino acids in the protein database, supports the idea that each amino acid has, at least, different phi intrinsic propensities. Consideration of all conformations, or only coil conformations, in the protein database produces similar results. The reasonable correlation between these experimental and theoretical data and the hydrogen-exchange data in random-coil peptides suggests that maximisation of hydrophobic surface-buried and hydrogen-bond formation with the solvent could be responsible for these different random-coil conformational preferences. Analysis of the intrinsic propensities for beta-strand, alpha-helix and polyproline II dihedral angles of the 20 amino acids in coil conformations, indicates that the side-chain of the amino acids is mainly determining the relative preferences for the phi angle.

  6. Design and numerical evaluation of a volume coil array for parallel MR imaging at ultrahigh fields

    PubMed Central

    Pang, Yong; Wong, Ernest W.H.; Yu, Baiying

    2014-01-01

    In this work, we propose and investigate a volume coil array design method using different types of birdcage coils for MR imaging. Unlike the conventional radiofrequency (RF) coil arrays of which the array elements are surface coils, the proposed volume coil array consists of a set of independent volume coils including a conventional birdcage coil, a transverse birdcage coil, and a helix birdcage coil. The magnetic fluxes of these three birdcage coils are intrinsically cancelled, yielding a highly decoupled volume coil array. In contrast to conventional non-array type volume coils, the volume coil array would be beneficial in improving MR signal-to-noise ratio (SNR) and also gain the capability of implementing parallel imaging. The volume coil array is evaluated at the ultrahigh field of 7T using FDTD numerical simulations, and the g-factor map at different acceleration rates was also calculated to investigate its parallel imaging performance. PMID:24649435

  7. Type I macrophage scavenger receptor contains α-helical and collagen-like coiled coils

    NASA Astrophysics Data System (ADS)

    Kodama, Tatsuhiko; Freeman, Mason; Rohrer, Lucia; Zabrecky, James; Matsudaira, Paul; Krieger, Monty

    1990-02-01

    The macrophage scavenger receptor is a trimeric membrane glycoprotein with unusual ligand-binding properties which has been implicated in the development of atherosclerosis. The trimeric structure of the bovine type I scavenger receptor, deduced by complementary DNA cloning, contains three extracellular C-terminal cysteine-rich domains connected to the transmembrane domain by a long fibrous stalk. This stalk structure, composed of an a-helical coiled coil and a collagen-like triple helix, has not previously been observed in an integral membrane protein.

  8. Three-coil inductively coupled plasma (ICP) source with individually controlled coil currents supplied from a single power generator

    NASA Astrophysics Data System (ADS)

    Dorf, Leonid; Rauf, Shahid; Liu, Jonathan; Kenney, Jason; Lane, Steven; Nguyen, Andrew; Ramaswamy, Kartik; Collins, Ken

    2013-09-01

    As requirements on plasma uniformity get more stringent in the semiconductor industry, an ICP source with 3 coils becomes warranted. Designing a power distribution/50 Ω-tuning network (PDN) that delivers the power from a single generator to 3 coils is complicated, due to inductive coupling between the coils, and between coils and plasma. Our PDN comprises several capacitors, including 2 variable ones, C1,2, connected in parallel to 2 coils. A set of equations for coils/plasma currents was solved over a wide parameter space to determine practical values/ranges for all capacitors. It was shown that by moving along a pre-determined programming path in C1,2 space, one can attain various coil current ratios (CCR) without crossing resonance curves. The latter causes coil current reversal, which may result in plasma instabilities and affect uniformity. Based on modeling results, the PDN was built and tested using a specially made 3-coil source. A wide range of CCR was achieved by varying C1,2, including maxima or minima in any 2 coils. With slight adjustments (to account for parasitics and actual plasma coupling), the model correctly predicted experimentally observed CCR for each tested C1,2 pair. Likewise, the theoretical resonance structure was reproduced experimentally with good agreement.

  9. X-Ray Crystal Structure of a TRPM Assembly Domain Reveals An Antiparallel Four-Stranded Coiled-Coil

    SciTech Connect

    Fujiwara, Y.; Minor, D.L.; Jr.

    2009-05-18

    Transient receptor potential (TRP) channels comprise a large family of tetrameric cation-selective ion channels that respond to diverse forms of sensory input. Earlier studies showed that members of the TRPM subclass possess a self-assembling tetrameric C-terminal cytoplasmic coiled-coil domain that underlies channel assembly and trafficking. Here, we present the high-resolution crystal structure of the coiled-coil domain of the channel enzyme TRPM7. The crystal structure, together with biochemical experiments, reveals an unexpected four-stranded antiparallel coiled-coil architecture that bears unique features relative to other antiparallel coiled-coils. Structural analysis indicates that a limited set of interactions encode assembly specificity determinants and uncovers a previously unnoticed segregation of TRPM assembly domains into two families that correspond with the phylogenetic divisions seen for the complete subunits. Together, the data provide a framework for understanding the mechanism of TRPM channel assembly and highlight the diversity of forms found in the coiled-coil fold.

  10. A procedure for refining a coiled coil protein structure using x-ray fiber diffraction and modeling.

    PubMed Central

    Briki, Fatma; Doucet, Jean; Etchebest, Catherine

    2002-01-01

    We describe a combined use of experimental and simulation techniques to configure side chains in a coiled coil structure. As already demonstrated in a previous work, x-ray diffraction patterns from hard alpha-keratin fibers in the 5.15 A meridian zone reflect the global configuration of the chi(1) dihedral angle of the coiled coil side chains. Molecular simulations, such as energy minimization and molecular dynamics, and rotameric representation in the PDB, are used here on a heterodimeric coiled coil to investigate the dihedral angle distribution along the sequence. Different procedures have been used to build the structure, the quality assessment was based on the agreement between the simulated diffraction patterns and the experimental ones in the fingerprint region of coiled coils (5.15 A). The best one for building a realistic coiled coil structure consists of placing the side chains using molecular dynamics (MD) simulations, followed by side chain positioning using SMD or SCWRL procedures. The side chains and the backbone are equilibrated during the MD until they reach an equilibrium state for the t/g(+) ratio. Positioning the side chains on the resulting backbone, using the above procedures, gives rise to a well-defined 5.15 A meridian reflection. PMID:12324400

  11. The heterotrimeric laminin coiled-coil domain exerts anti-adhesive effects and induces a pro-invasive phenotype.

    PubMed

    Santos-Valle, Patricia; Guijarro-Muñoz, Irene; Cuesta, Angel M; Alonso-Camino, Vanesa; Villate, Maider; Alvarez-Cienfuegos, Ana; Blanco, Francisco J; Sanz, Laura; Alvarez-Vallina, Luis

    2012-01-01

    Laminins are large heterotrimeric cross-shaped extracellular matrix glycoproteins with terminal globular domains and a coiled-coil region through which the three chains are assembled and covalently linked. Laminins are key components of basement membranes, and they serve as attachment sites for cell adhesion, migration and proliferation. In this work, we produced a recombinant fragment comprising the entire laminin coiled-coil of the α1-, β1-, and γ1-chains that assemble into a stable heterotrimeric coiled-coil structure independently of the rest of the molecule. This domain was biologically active and not only failed to serve as a substrate for cell attachment, spreading and focal adhesion formation but also inhibited cell adhesion to laminin when added to cells in a soluble form at the time of seeding. Furthermore, gene array expression profiling in cells cultured in the presence of the laminin coiled-coil domain revealed up-regulation of genes involved in cell motility and invasion. These findings were confirmed by real-time quantitative PCR and zymography assays. In conclusion, this study shows for the first time that the laminin coiled-coil domain displays anti-adhesive functions and has potential implications for cell migration during matrix remodeling.

  12. The Heterotrimeric Laminin Coiled-Coil Domain Exerts Anti-Adhesive Effects and Induces a Pro-Invasive Phenotype

    PubMed Central

    Santos-Valle, Patricia; Guijarro-Muñoz, Irene; Cuesta, Ángel M.; Alonso-Camino, Vanesa; Villate, Maider; Álvarez-Cienfuegos, Ana; Blanco, Francisco J.; Sanz, Laura; Álvarez-Vallina, Luis

    2012-01-01

    Laminins are large heterotrimeric cross-shaped extracellular matrix glycoproteins with terminal globular domains and a coiled-coil region through which the three chains are assembled and covalently linked. Laminins are key components of basement membranes, and they serve as attachment sites for cell adhesion, migration and proliferation. In this work, we produced a recombinant fragment comprising the entire laminin coiled-coil of the α1-, β1-, and γ1-chains that assemble into a stable heterotrimeric coiled-coil structure independently of the rest of the molecule. This domain was biologically active and not only failed to serve as a substrate for cell attachment, spreading and focal adhesion formation but also inhibited cell adhesion to laminin when added to cells in a soluble form at the time of seeding. Furthermore, gene array expression profiling in cells cultured in the presence of the laminin coiled-coil domain revealed up-regulation of genes involved in cell motility and invasion. These findings were confirmed by real-time quantitative PCR and zymography assays. In conclusion, this study shows for the first time that the laminin coiled-coil domain displays anti-adhesive functions and has potential implications for cell migration during matrix remodeling. PMID:22723936

  13. High-field magnetic resonance imaging using solenoid radiofrequency coils.

    PubMed

    Vegh, Viktor; Gläser, Philipp; Maillet, Donald; Cowin, Gary J; Reutens, David C

    2012-10-01

    High-resolution magnetic resonance imaging using dedicated high-field radiofrequency micro-coils at 16.4 T (700 MHz) was investigated. Specific solenoid coils primarily using silver and copper as conductors with enamel and polyurethane coatings were built to establish which coil configuration produces the best image. Image quality was quantified using signal-to-noise ratio and signal variation over regions of interest. Benchmarking was conducted using 5-mm diameter coils, as this size is comparable to an established coil of the same size. Our 1.4-mm-diameter coils were compared directly to each other, from which we deduce performance as a function of conductor material and coating. A variety of materials and conductor coatings allowed us to choose an optimal design, which we used to image a kidney section at 10-micron resolution. We applied zero-fill extrapolation to achieve 5-micron resolution.

  14. Coiled tubing drilling requires economic and technical analyses

    SciTech Connect

    Gary, S.C. )

    1995-02-20

    Field experience has proven that coiled tubing drilling is a technical and economic option on some wells; however, coiled tubing drilling is not the solution to every drilling prospect or production-enhancement job. To determine if coiled tubing drilling is viable, the geographic, technical, and economic aspects of each project must be considered in detail. Generally, with some limitations, coiled tubing drilling is feasible primarily when jointed pipe cannot be used effectively. Also, coiled tubing drilling may be more appropriate because of some special well site requirements, such as environmental regulations requiring less surface disturbance. The paper discusses technical considerations which need to be considered, economic feasibility, limitations of well types (new shallow wells, conventional reentry, through-tubing reentry, and underbalanced drilling), and outlook for further growth in the coiled tubing drilling industry.

  15. Chronic vascular reactions to steel coil occlusion devices.

    PubMed

    Barth, K H; Strandberg, J D; Kaufman, S L; White, R I

    1978-09-01

    Original Gianturco steel coil vascular embolization devices and two modifications were compared for their occlusive effects and for the degree of adverse reaction in the surrounding vessel wall. Modifications consisted of silk or Ivalon replacing the wool strands of the original device. Single coils were placed into the left renal artery of nine mixed breed swine and restudied 3 months later. The bare coils did not occlude the vessels nor lead to significant foreign body reaction. Wool, silk, and Ivalon coils produced prompt and sustained renal artery occlusion. Upon histologic examination of the vessel wall, foreign body and chronic inflammatory reaction was found to be strongest against wool. This reaction was less with silk and markedly diminished with Ivalon. The results indicate that silk and Ivalon coils, while having the same occlusive effect, are preferable to wool coils if less local reaction is desired.

  16. Performance verification tests of JT-60SA CS model coil

    NASA Astrophysics Data System (ADS)

    Obana, Tetsuhiro; Murakami, Haruyuki; Takahata, Kazuya; Hamaguchi, Shinji; Chikaraishi, Hirotaka; Mito, Toshiyuki; Imagawa, Shinsaku; Kizu, Kaname; Natsume, Kyohei; Yoshida, Kiyoshi

    2015-11-01

    As a final check of the coil manufacturing method of the JT-60 Super Advanced (JT-60SA) central solenoid (CS), we verified the performance of a CS model coil. The model coil comprised a quad-pancake wound with a Nb3Sn cable-in-conduit conductor. Measurements of the critical current, joint resistance, pressure drop, and magnetic field were conducted in the verification tests. In the critical-current measurement, the critical current of the model coil coincided with the estimation derived from a strain of -0.62% for the Nb3Sn strands. As a result, critical-current degradation caused by the coil manufacturing process was not observed. The results of the performance verification tests indicate that the model coil met the design requirements. Consequently, the manufacturing process of the JT-60SA CS was established.

  17. Toroid cavity/coil NMR multi-detector

    DOEpatents

    Gerald, II, Rex E.; Meadows, Alexander D.; Gregar, Joseph S.; Rathke, Jerome W.

    2007-09-18

    An analytical device for rapid, non-invasive nuclear magnetic resonance (NMR) spectroscopy of multiple samples using a single spectrometer is provided. A modified toroid cavity/coil detector (TCD), and methods for conducting the simultaneous acquisition of NMR data for multiple samples including a protocol for testing NMR multi-detectors are provided. One embodiment includes a plurality of LC resonant circuits including spatially separated toroid coil inductors, each toroid coil inductor enveloping its corresponding sample volume, and tuned to resonate at a predefined frequency using a variable capacitor. The toroid coil is formed into a loop, where both ends of the toroid coil are brought into coincidence. Another embodiment includes multiple micro Helmholtz coils arranged on a circular perimeter concentric with a central conductor of the toroid cavity.

  18. Retrieval of unintended migrated detached coil: case report.

    PubMed

    Oh, Jiwoong; Kim, Jongyun; Hong, Sunki; Hu, Chul; Pyen, Jinsu; Whang, Kum; Cho, Sungmin; You, Do-Sung

    2014-09-01

    Owing to the rapid development of intervention techniques and devices, endovascular coil embolization of cerebral arteries has become standardized. It is particularly preferred when a patient presents with an unruptured intracranial aneurysm of the posterior communicating artery (PcomA). However, the risk of thrombogenic complications of the coil migration may also result in a large cerebral infarction. When coil migration occurs during embolization, a procedure for removal of the embolic coil should be performed immediately. We experienced a clinically rare case of migration of a framing coil to the distal middle cerebral artery aneurysm during endovascular embolization of an unruptured PcomA aneurysm. The migrated coil was barely retrieved using snare techniques.

  19. Cavity resonator coil for high field magnetic resonance imaging.

    PubMed

    Solis, S E; Tomasi, D; Rodriguez, A O

    2007-01-01

    A variant coil of the high frequency cavity resonator coil was experimentally developed according to the theoretical frame proposed by Mansfield in 1990. This coil design is similar to the popular birdcage coil but it has the advantage that it can be easily built following the physical principles of the cavity resonators [1]. The equivalent circuit approach was used to compute the resonant frequency of this coil design, and compared the results with those frequency values obtained with theory. A transceiver coil composed of 4 cavities with a rod length of 4.5 cm, and a resonant frequency of 170.29 MHz was built. Phantom images were then acquired to test its viability using standard imaging sequences. The theory facilitates its development for high frequency MRI applications of animal models.

  20. Ferrite core non-linearity in coils for magnetic neurostimulation.

    PubMed

    RamRakhyani, Anil Kumar; Lazzi, Gianluca

    2014-10-01

    The need to correctly predict the voltage across terminals of mm-sized coils, with ferrite core, to be employed for magnetic stimulation of the peripheral neural system is the motivation for this work. In such applications, which rely on a capacitive discharge on the coil to realise a transient voltage curve of duration and strength suitable for neural stimulation, the correct modelling of the non-linearity of the ferrite core is critical. A demonstration of how a finite-difference model of the considered coils, which include a model of the current-controlled inductance in the coil, can be used to correctly predict the time-domain voltage waveforms across the terminals of a test coil is presented. Five coils of different dimensions, loaded with ferrite cores, have been fabricated and tested: the measured magnitude and width of the induced pulse are within 10% of simulated values.

  1. Performance of an induction coil gun

    SciTech Connect

    Shokair, I.R.; Cowan, M.; Kaye, R.J.; Marder, B.M.

    1993-10-01

    Performance of an electromagnetic induction launcher is considered for three types of armatures. These are: Solid, 1-element wound and 16-element wound aluminum ar natures. The one element wound armature has uniform current density throughout. Because of the radial distribution of the current density, the wound armature can withstand field reversal (working against embedded flux in the armature) and still maintain low temperature. Slingshot simulations were performed, for several configurations. Best performance was obtained for a single element wound armature with two field reversals. For a 60 kg projectile, 10.5 cm coil inner radius and 5.5 cm coil build, the velocity after 50 meters of launcher length (670 stages) exceeded 3.5 km/sec with an overall efficiency of about 45%. For the same parameters the solid and 16-element wound armatures reach a velocity of about 3.3 km/sec after 800 stages (60 meters of launcher length) but without field reversal. A velocity of 3.5 km/sec is possible after 60 meters of launcher length with the 16-element wound armature with one field reversal, but the temperature is close to the melting temperature of aluminum. In all simulations with a solid armature, melting of some of the surface material occurs. However, it is shown that most of the melting occurs after contribution has been made to the forward going pressure, that is, melting does not affect the electrical performance of the launcher. The effect of coil firing tune jitter on launcher performance is also considered and is found to be very small for realistic perturbations. For {plus_minus}2 {mu}-secs random jitter, the reduction in the final velocity for a 60 meter launcher with a solid armature is less than 0.1% and the increase in temperature is only 2%. This result holds for all types of armatures.

  2. Performance of an induction coil launcher

    SciTech Connect

    Shokair, I.R.; Cowan, M.; Kaye, R.J.; Marder, B.M.

    1993-12-31

    Performance of an electromagnetic induction launcher is considered for three types of armatures. These are: Solid, 1-element wound and 16-element wound aluminum armatures. The one element wound armature has uniform current density throughout. Because of the uniformity of the current density, the wound armature can withstand field reversal and still maintain low temperature. Slingshot simulations were performed for several configurations. Best performance was obtained for a single element wound armature with two field reversals. For a 60 kg projectile, 10.5 cm coil inner radius and 5.5 cm coil build, the velocity after 50 meters of launcher length (670 stages) exceeded 3.5 km/sec with an overall efficiency of about 45%. For the same parameters the solid and 16-element wound armatures reach a velocity of about 3.3 km/sec after 800 stages (60 meters of launcher length) but without field reversal. A velocity of 3.5 km/sec is possible after 60 meters of launcher length with the 16-element wound armature with one field reversal, but the temperature is close to the melting temperature of aluminum. In all simulations with a solid armature, melting of some of the surface material occurs. However, it is shown that most of the melting occurs after contribution has been made to the forward going pressure, that is, melting does not affect the electrical performance of the launcher. The effect of coil firing time jitter on launcher performance is also considered and is found to be very small for realistic perturbations. For {plus_minus} 2 {mu}-secs random jitter, the reduction in the final velocity for a 60 meter launcher with a solid armature is less than 0.1% and the increase in temperature is only 2%. This result holds for all types of armatures.

  3. Magnetic Test Facility - Sensor and Coil Calibrations

    DTIC Science & Technology

    2013-08-01

    RF ) source, which is used to release excited elec- trons from their high energy state; this is achieved via a...3.2 Simulation Fi gu re 3. 15 :R ep re se nt at io n of B y ,B z an d B x fie ld s co m po ne nt s m ap pe d in th e yz -p la ne at x = 0, fo rt he EL...sensor calibration, but also calibration of the excitation coils used within the magnetic test system. Reduction of external noise influences

  4. Sound Coiled-Tubing Drilling Practices

    SciTech Connect

    Williams, Thomas; Deskins, Greg; Ward, Stephen L.; Hightower, Mel

    2001-09-30

    This Coiled-Tubing Drilling (CTD) Sound Practices Manual provides tools needed by CTD engineers and supervisors to plan, design and perform safe, successful CTD operations. As emphasized throughout, both careful planning and attention to detail are mandatory for success. A bibliography of many useful CTD references is presented in Chapter 6. This manual is organized according to three processes: 1) Pre-Job Planning Process, 2) Operations Execution Process, and 3) Post-Job Review Process. Each is discussed in a logical and sequential format.

  5. Extreme acoustic metamaterial by coiling up space.

    PubMed

    Liang, Zixian; Li, Jensen

    2012-03-16

    We show that by coiling up space using curled perforations, a two-dimensional acoustic metamaterial can be constructed to give a frequency dispersive spectrum of extreme constitutive parameters, including double negativity, a density near zero, and a large refractive index. Such an approach has band foldings at the effective medium regime without using local resonating subwavelength structures, while the principle can be easily generalized to three dimensions. Negative refraction with a double negative prism and tunneling with a density-near-zero metamaterial are numerically demonstrated.

  6. Phase and sensitivity of receiver coils in magnetic resonance imaging

    PubMed Central

    McVeigh, E. R.; Bronskill, M. J.; Henkelman, R. M.

    2007-01-01

    Receiver coil response is a major cause of nonuniformities in magnetic resonance images. The spatial dependence of the sensitivity and phase of single-saddle receiver coils has been investigated quantitatively by calculating the H1 field and comparing the results with measurements of a uniform phantom. Agreement between the measurements and calculations is excellent. A method is developed which corrects for both the nonuniform sensitivity and the phase shifts introduced by receiver coils. PMID:3796476

  7. Investigating a Quadrant Surface Coil Array for NQR Remote Sensing

    DTIC Science & Technology

    2014-10-23

    UNCLASSIFIED 1  Abstract—this paper is on the design and fabrication of a surface coil array in a quadrant layout for NQR (Nuclear Quadrupole...coupling and SNR (Signal-to-Noise Ratio) at standoff distances perpendicular from each coil. Index Terms— Nuclear Quadrupole Resonance, NQR ...Coil Array, probe, Nuclear Magnetic Resonance, tuning, decoupling, RLC, mutual coupling, RLC I. INTRODUCTION N Nuclear quadrupole resonance ( NQR

  8. Coiled tubing technology advances to a bright future

    SciTech Connect

    Ghiselin, R.

    1998-07-01

    This supplement contains six short articles on coiled tubing, its advantages, performance, and materials. The articles are: Coiled Tubing--On the Brink of a New Millennium; CT Advances Promise a Broad, Dynamic Future; Performance, Safety and Cost Make the Case for HPCT; Fast and Accurate, CTD Helps Drillers Hit Their Targets; Composite Tubing Rapidly Proves Advantages in the Field; and People and Performance are Key to Coiled Tubing Growth.

  9. Coil Design for Functional Magnetic Stimulation of the Inspiratory Muscles

    DTIC Science & Technology

    2007-11-02

    Coil design for functional magnetic stimulation of the inspiratory muscles Ian N. Hsiao, Ph.D., member IEEE, Ercheng Zhu, MD, PhD, Vernon Lin...new magnetic coil (MC) for effective functional magnetic stimulation (FMS) of inspiratory muscles in human subjects. Part 1 of the study emphasized...2 is reported in another paper titled “Racetrack magnetic coil for functional magnetic stimulation of the inspiratory muscles – toward magnetic

  10. Laminar flow effects in the coil planet centrifuge

    NASA Technical Reports Server (NTRS)

    Herrmann, F. T.

    1984-01-01

    The coil planet centrifuge designed by Ito employs flow of a single liquid phase, through a rotating coiled tube in a centrifugal force field, to provide a separation of particles based on sedimentation rates. Mathematical solutions are derived for the linear differential equations governing particle behavior in the coil planet centrifuge device. These solutions are then applied as the basis of a model for optimizing particle separations.

  11. Coil Occlusion of the Patent Ductus Arteriosus: Lessons Learned

    SciTech Connect

    Sanatani, Shubhayan; Potts, James E.; Ryan, Angela; Sandor, George G.S.; Human, Derek G.; Culham, J.A. Gordon

    2000-03-15

    Purpose: To review the clinical outcomes of catheter-directed coil occlusion (coil occlusion) of persistently patent ductus arteriosus (PDA) at a pediatric tertiary care hospital.Methods: A retrospective review of all patients referred to the Cardiac Catheterization Laboratory for coil occlusion at our institution was performed. Twenty-one consecutive patients (12 female) underwent coil occlusion and follow-up between May 1995 and December 1997. We undertook PDA occlusion if: (a) the PDA narrowed to less than 4 mm on echocardiogram and (b) the minimum body weight was approximately 10 kg. Standard right and retrograde left heart catheterization was performed, followed by coil occlusion. Color-flow mapping (CFM) was used intra-procedurally to confirm occlusion of the PDA with a follow-up study several weeks later.Results: The median age and weight of the patients were 33 months and 13.2 kg, respectively. Fourteen patients received one coil, with six requiring a second coil and one requiring multiple coils. Initial follow-up was at a median of 2.4 months. At latest follow-up, 2 patients still have persistent flow at the ductal level. The coils were deployed without complication or embolization.Conclusions: A review of our first 21 cases demonstrated three important lessons: (1) the maximum diameter of the PDA suitable for coil occlusion is approximately 3 mm; (2) CFM must show complete obliteration of flow in the catheterization lab in order to ensure occlusion of the PDA at follow-up; and (3) the Jackson detachable system allows for precise placement of the coil, often within another coil.

  12. Coil occlusion of the paient ductus arteriosus: lessons learned

    SciTech Connect

    Sanatani, Shubhayan; Potts, James E.; Ryan, Angela; Sandor, George G. S.; Human, Derek G.; Culham, J. A. Gordon

    2000-03-15

    Purpose: To review the clinical outcomes of catheter-directed coil occlusion (coil occlusion) of persistently patent ductus arteriosus (PDA) at a pediatric tertiary care hospital.Methods: A retrospective review of all patients referred to the Cardiac Catheterization Laboratory for coil occlusion at our institution was performed. Twenty-one consecutive patients (12 female) underwent coil occlusion and follow-up between May 1995 and December 1997. We undertook PDA occlusion if: (a) the PDA narrowed to less than 4 mm on echocardiogram and (b) the minimum body weight was approximately 10 kg. Standard right and retrograde left heart catheterization was performed, followed by coil occlusion. Color-flow mapping (CFM) was used intra-procedurally to confirm occlusion of the PDA with a follow-up study several weeks later.Results: The median age and weight of the patients were 33 months and 13.2 kg, respectively. Fourteen patients received one coil, with six requiring a second coil and one requiring multiple coils. Initial follow-up was at a median of 2.4 months. At latest follow-up, 2 patients still have persistent How at the ductal level. The coils were deployed without complication or embolization.Conclusions: A review of our first 21 cases demonstrated three important lessons: (1) the maximum diameter of the PDA suitable for coil occlusion is approximately 3 mm; (2) CFM must show complete obliteration of flow in the catheterization lab in order to ensure occlusion of the PDA at follow-up; and (3) the Jackson detachable system allows for precise placement of the coil, often within another coil.

  13. MRI surface-coil pair with strong inductive coupling.

    PubMed

    Mett, Richard R; Sidabras, Jason W; Hyde, James S

    2016-12-01

    A novel inductively coupled coil pair was used to obtain magnetic resonance phantom images. Rationale for using such a structure is described in R. R. Mett et al. [Rev. Sci. Instrum. 87, 084703 (2016)]. The original rationale was to increase the Q-value of a small diameter surface coil in order to achieve dominant loading by the sample. A significant improvement in the vector reception field (VRF) is also seen. The coil assembly consists of a 3-turn 10 mm tall meta-metallic self-resonant spiral (SRS) of inner diameter 10.4 mm and outer diameter 15.1 mm and a single-loop equalization coil of 25 mm diameter and 2 mm tall. The low-frequency parallel mode was used in which the rf currents on each coil produce magnetic fields that add constructively. The SRS coil assembly was fabricated and data were collected using a tissue-equivalent 30% polyacrylamide phantom. The large inductive coupling of the coils produces phase-coherency of the rf currents and magnetic fields. Finite-element simulations indicate that the VRF of the coil pair is about 4.4 times larger than for a single-loop coil of 15 mm diameter. The mutual coupling between coils influences the current ratio between the coils, which in turn influences the VRF and the signal-to-noise ratio (SNR). Data on a tissue-equivalent phantom at 9.4 T show a total SNR increase of 8.8 over the 15 mm loop averaged over a 25 mm depth and diameter. The experimental results are shown to be consistent with the magnetic resonance theory of the emf induced by spins in a coil, the theory of inductively coupled resonant circuits, and the superposition principle. The methods are general for magnetic resonance and other types of signal detection and can be used over a wide range of operating frequencies.

  14. High-Power COIL and YAG Laser Welding

    DTIC Science & Technology

    2002-01-24

    UNCLASSIFIED Defense Technical Information Center Compilation Part Notice ADP012387 TITLE: High-Power COIL and YAG Laser Welding DISTRIBUTION...ADP012376 thru ADP012405 UNCLASSIFIED High-power COIL and YAG laser welding Fumio Wani, Tokuhiro Nakabayashi, Akiyoshi Hayakawa, Sachio Suzuki, and...is worse, but it has the function of pulse modulation which the COIL dose not have. As a result of the welding test with the 6 kW Nd:YAG laser, it

  15. Endoluminal Loop Radiofrequency Coils for Gastrointestinal Wall Imaging

    DTIC Science & Technology

    2007-11-02

    to B0. The origins of noise in NMR are multiple. We have considered the electrical resistance of the isolated coil (in vacuum ) and the magnetic...where R’ is the electrical resistance of the isolated coil (in vacuum ) and R’’ is the equivalent electrical resistance due to the magnetic losses in...RESULTS In order to calculate the electrical resistance of the coils, we have simulated infinite long current patterns (copper) in vacuum . This

  16. Method for manufacturing a rotor having superconducting coils

    DOEpatents

    Driscoll, David I.; Shoykhet, Boris A.

    2001-01-01

    A method and apparatus for manufacturing a rotor for use with a rotating machine is provided that employs a superconducting coil on the rotor. An adhesive is applied to an outer surface of the rotor body, which may include a groove disposed within an outer surface of the rotor body. A superconducting coil is then mounted onto the rotor body such that the adhesive bonds the superconducting coil to the rotor body.

  17. The promotion of angiogenesis by growth factors integrated with ECM proteins through coiled-coil structures.

    PubMed

    Assal, Yasmine; Mie, Masayasu; Kobatake, Eiry

    2013-04-01

    An appropriate method to bind extracellular matrix (ECM) proteins and growth factors using advanced protein engineering techniques has the potential to enhance cell proliferation and differentiation for tissue regeneration and repair. In this study we developed a method to co-immobilize non-covalently an ECM protein to three different types of growth factors: basic fibroblast growth factor (bFGF), epidermal growth factor (EGF) and single-chain vascular endothelial growth factor (scVEGF121) through a coiled-coil structure formed by helixA/helixB in order to promote angiogenesis. The designed ECM was established by fusing two repeats of elastin-derived unit (APGVGV)(12), cell-adhesive sequence (RGD), laminin-derived IKVAV sequence and collagen-binding domain (CBD) to obtain CBDEREI2. HelixA was fused to each growth factor and helixB to the engineered ECM. Human umbilical vein endothelial cells (HUVECs) were cultured on engineered ECM and growth factors connected through the coiled-coil formation between helixA and helixB. Cell proliferation and capillary tube-like formation were monitored. Moreover, the differentiated cells with high expression of Ang-2 suggested the ECM remodeling. Our approach of non-covalent coupling method should provide a protein-release control system as a new contribution in biomaterial for tissue engineering field.

  18. Coiled-coil forming peptides for the induction of silver nanoparticles.

    PubMed

    Božič Abram, Sabina; Aupič, Jana; Dražić, Goran; Gradišar, Helena; Jerala, Roman

    2016-04-08

    Biopolymers with defined sequence patterns offer an attractive alternative for the formation of silver nanoparticle (AgNP). A set of coiled-coil dimer forming peptides was tested for their AgNP formation ability. Seventeen of those peptides mediated the formation of AgNPs in aqueous solution at neutral pH, while the formation of a coiled-coil dimer inhibited the nanoparticle generation. A QSAR regression model on the relationship between sequence and function suggests that in this peptide type the patterns KXQQ and KXEE are favorable, whereas Ala residues appear to have an inhibitory effect. UV-VIS spectra of the obtained nanoparticles gave a peak at around 420 nm, typical for AgNPs in the size range around 40 nm, which was confirmed by dynamic light scattering and transmission electron microscopy. Peptide-induced AgNPs exhibited good antibacterial activity, even after a 15 min contact time, while they had low toxicity to human cells at the same concentrations. These results show that our designed peptides generate AgNPs with antibacterial activity at mild conditions and might be used for antibacterial coatings.

  19. Design of a single-chain polypeptide tetrahedron assembled from coiled-coil segments.

    PubMed

    Gradišar, Helena; Božič, Sabina; Doles, Tibor; Vengust, Damjan; Hafner-Bratkovič, Iva; Mertelj, Alenka; Webb, Ben; Šali, Andrej; Klavžar, Sandi; Jerala, Roman

    2013-06-01

    Protein structures evolved through a complex interplay of cooperative interactions, and it is still very challenging to design new protein folds de novo. Here we present a strategy to design self-assembling polypeptide nanostructured polyhedra based on modularization using orthogonal dimerizing segments. We designed and experimentally demonstrated the formation of the tetrahedron that self-assembles from a single polypeptide chain comprising 12 concatenated coiled coil-forming segments separated by flexible peptide hinges. The path of the polypeptide chain is guided by a defined order of segments that traverse each of the six edges of the tetrahedron exactly twice, forming coiled-coil dimers with their corresponding partners. The coincidence of the polypeptide termini in the same vertex is demonstrated by reconstituting a split fluorescent protein in the polypeptide with the correct tetrahedral topology. Polypeptides with a deleted or scrambled segment order fail to self-assemble correctly. This design platform provides a foundation for constructing new topological polypeptide folds based on the set of orthogonal interacting polypeptide segments.

  20. Principles Governing the Self-Assembly of Coiled-Coil Protein Nanoparticles

    PubMed Central

    Indelicato, Giuliana; Wahome, Newton; Ringler, Philippe; Müller, Shirley A.; Nieh, Mu-Ping; Burkhard, Peter; Twarock, Reidun

    2016-01-01

    Self-assembly refers to the spontaneous organization of individual building blocks into higher order structures. It occurs in biological systems such as spherical viruses, which utilize icosahedral symmetry as a guiding principle for the assembly of coat proteins into a capsid shell. In this study, we characterize the self-assembling protein nanoparticle (SAPN) system, which was inspired by such viruses. To facilitate self-assembly, monomeric building blocks have been designed to contain two oligomerization domains. An N-terminal pentameric coiled-coil domain is linked to a C-terminal coiled-coil trimer by two glycine residues. By combining monomers with inherent propensity to form five- and threefold symmetries in higher order agglomerates, the supposition is that nanoparticles will form that exhibit local and global symmetry axes of order 3 and 5. This article explores the principles that govern the assembly of such a system. Specifically, we show that the system predominantly forms according to a spherical core-shell morphology using a combination of scanning transmission electron microscopy and small angle neutron scattering. We introduce a mathematical toolkit to provide a specific description of the possible SAPN morphologies, and we apply it to characterize all particles with maximal symmetry. In particular, we present schematics that define the relative positions of all individual chains in the symmetric SAPN particles, and provide a guide of how this approach can be generalized to nonspherical morphologies, hence providing unprecedented insights into their geometries that can be exploited in future applications. PMID:26840729

  1. ACCORD: an assessment tool to determine the orientation of homodimeric coiled-coils

    PubMed Central

    Kim, Byeong-Won; Jung, Yang Ouk; Kim, Min Kyung; Kwon, Do Hoon; Park, Si Hoon; Kim, Jun Hoe; Kuk, Yong-Boo; Oh, Sun-Joo; Kim, Leehyeon; Kim, Bong Heon; Yang, Woo Seok; Song, Hyun Kyu

    2017-01-01

    The coiled-coil (CC) domain is a very important structural unit of proteins that plays critical roles in various biological functions. The major oligomeric state of CCs is a dimer, which can be either parallel or antiparallel. The orientation of each α-helix in a CC domain is critical for the molecular function of CC-containing proteins, but cannot be determined easily by sequence-based prediction. We developed a biochemical method for assessing differences between parallel and antiparallel CC homodimers and named it ACCORD (Assessment tool for homodimeric Coiled-Coil ORientation Decision). To validate this technique, we applied it to 15 different CC proteins with known structures, and the ACCORD results identified these proteins well, especially with long CCs. Furthermore, ACCORD was able to accurately determine the orientation of a CC domain of unknown directionality that was subsequently confirmed by X-ray crystallography and small angle X-ray scattering. Thus, ACCORD can be used as a tool to determine CC directionality to supplement the results of in silico prediction. PMID:28266564

  2. Membrane interactions of fusogenic coiled-coil peptides: implications for lipopeptide mediated vesicle fusion.

    PubMed

    Rabe, Martin; Schwieger, Christian; Zope, Harshal R; Versluis, Frank; Kros, Alexander

    2014-07-08

    Fusion of lipid membranes is an important natural process for the intra- and intercellular exchange of molecules. However, little is known about the actual fusion mechanism at the molecular level. In this study we examine a system that models the key features of this process. For the molecular recognition between opposing membranes two membrane anchored heterodimer coiled-coil forming peptides called 'E' (EIAALEK)3 and 'K' (KIAALKE)3 were used. Lipid monolayers and IR reflection absorption spectroscopy (IRRAS) revealed the interactions of the peptides 'E', 'K', and their parallel coiled-coil complex 'E/K' with the phospholipid membranes and thereby mimicked the pre- and postfusion states, respectively. The peptides adopted α-helical structures and were incorporated into the monolayers with parallel orientation. The strength of binding to the monolayer differed for the peptides and tethering them to the membrane increased the interactions even further. Remarkably, these interactions played a role even in the postfusion state. These findings shed light on important mechanistic details of the membrane fusion process in this model system. Furthermore, their implications will help to improve the rational design of new artificial membrane fusion systems, which have a wide range of potential applications in supramolecular chemistry and biomedicine.

  3. Dimeric coiled-coil structure of Saccharomyces cerevisiae Atg16 and its functional significance in autophagy.

    PubMed

    Fujioka, Yuko; Noda, Nobuo N; Nakatogawa, Hitoshi; Ohsumi, Yoshinori; Inagaki, Fuyuhiko

    2010-01-08

    Atg16 interacts with the Atg12-Atg5 protein conjugate through its N-terminal domain and self-assembles through its coiled-coil domain (CCD). Formation of the Atg12-Atg5.Atg16 complex is essential for autophagy, the bulk degradation process conserved among most eukaryotes. Here, we report the crystal structures of full-length Saccharomyces cerevisiae Atg16 at 2.8 A resolution and its CCD at 2.5 A resolution. The CCD and full-length Atg16 each exhibit an extended alpha-helix, 90 and 130 A, respectively, and form a parallel coiled-coil dimer in the crystals. Although the apparent molecular weight of Atg16 observed by gel-filtration chromatography suggests that Atg16 is tetrameric, an analytical ultracentrifugation study showed Atg16 as a dimer in solution, consistent with the crystal structure. Evolutionary conserved surface residues clustered at the C-terminal half of Atg16 CCD were shown to be crucial for autophagy. These results will give a structural basis for understanding the molecular functions and significance of Atg16 in autophagy.

  4. Invited review the coiled coil silk of bees, ants, and hornets.

    PubMed

    Sutherland, Tara D; Weisman, Sarah; Walker, Andrew A; Mudie, Stephen T

    2012-06-01

    In this article, we review current knowledge about the silk produced by the larvae of bees, ants, and hornets [Apoidea and Vespoidea: Hymenoptera]. Different species use the silk either alone or in composites for a variety of purposes including mechanical reinforcement, thermal regulation, or humidification. The characteristic molecular structure of this silk is α-helical proteins assembled into tetrameric coiled coils. Gene sequences from seven species are available, and each species possesses a copy of each of four related silk genes that encode proteins predicted to form coiled coils. The proteins are ordered at multiple length scales within the labial gland of the final larval instar before spinning. The insects control the morphology of the silk during spinning to produce either fibers or sheets. The silk proteins are small and non repetitive and have been produced artificially at high levels by fermentation in E. coli. The artificial silk proteins can be fabricated into materials with structural and mechanical properties similar to those of native silks.

  5. Principles Governing the Self-Assembly of Coiled-Coil Protein Nanoparticles.

    PubMed

    Indelicato, Giuliana; Wahome, Newton; Ringler, Philippe; Müller, Shirley A; Nieh, Mu-Ping; Burkhard, Peter; Twarock, Reidun

    2016-02-02

    Self-assembly refers to the spontaneous organization of individual building blocks into higher order structures. It occurs in biological systems such as spherical viruses, which utilize icosahedral symmetry as a guiding principle for the assembly of coat proteins into a capsid shell. In this study, we characterize the self-assembling protein nanoparticle (SAPN) system, which was inspired by such viruses. To facilitate self-assembly, monomeric building blocks have been designed to contain two oligomerization domains. An N-terminal pentameric coiled-coil domain is linked to a C-terminal coiled-coil trimer by two glycine residues. By combining monomers with inherent propensity to form five- and threefold symmetries in higher order agglomerates, the supposition is that nanoparticles will form that exhibit local and global symmetry axes of order 3 and 5. This article explores the principles that govern the assembly of such a system. Specifically, we show that the system predominantly forms according to a spherical core-shell morphology using a combination of scanning transmission electron microscopy and small angle neutron scattering. We introduce a mathematical toolkit to provide a specific description of the possible SAPN morphologies, and we apply it to characterize all particles with maximal symmetry. In particular, we present schematics that define the relative positions of all individual chains in the symmetric SAPN particles, and provide a guide of how this approach can be generalized to nonspherical morphologies, hence providing unprecedented insights into their geometries that can be exploited in future applications.

  6. Double Negativity in 3D Space Coiling Metamaterials

    PubMed Central

    Maurya, Santosh K.; Pandey, Abhishek; Shukla, Shobha; Saxena, Sumit

    2016-01-01

    Metamaterials displaying negative refractive index has remarkable potential to facilitate the manipulation of incident waves for wide variety of applications such as cloaking, superlensing and the like. Space-coiling approach is a recently explored technique to achieve extreme properties. The space coiling phenomena cause less energy absorption as compared to local resonating phenomena for obtaining extreme parameters. Here we show extreme properties in doubly negative 3D space coiling acoustic metamaterials. Frequency dispersive spectrum of extreme constitutive parameters has been calculated for 2D maze and 3D space coiling labyrinthine structure. This is in good agreement to the calculated acoustic band dispersion. PMID:27649966

  7. Hole cleaning imperative in coiled tubing drilling operations

    SciTech Connect

    Rameswar, R.M.; Mudda, K.

    1995-09-01

    Annular flow modeling in coiled tubing applications is essential for optimizing mud rheology and keeping the hole clean. Cuttings transport in coiled tubing drilling must be optimized, particularly the modeling of hole cleaning capabilities. The effects of two different muds in contrasting geometries on hold cleaning efficiency are considered, with the simulation performed using Petrocalc 14. Coiled tubing is widely used to drill new vertical and horizontal wells, and in re-entry operations. Horizontal well problems are subsequently modeled, where annular eccentricities can range anywhere from concentric to highly offset, given the highly buckled or helically deflected states of many drill coils.

  8. Coiled tubing used for slim hole re-entry

    SciTech Connect

    Traonmilin, E. ); Newman, K. )

    1992-02-17

    A coiled tubing unit with slim hole tools successfully re-entered and cored an existing Elf Aquitaine vertical well in the Paris basin in France. This experiment proved that coiled tubing could be used to drill, core, and test a slim hole well. Elf Aquitaine studied the use of coiled tubing for drilling inexpensive exploration wells in the Paris basin. As a result of this study, Elf believed that coiled tubing exploration drilling could significantly reduce exploration costs. This paper reports on a number of questions raised by this study: Can coiled tubing be used effectively to drill slim open hole How would the drilling rate compare with that of a conventional drilling rig If the rate were too slow, coiled tubing might not be economical. Can a straight vertical well be drilled Coiled tubing pipe has a residual curvature from bending over the reel and gooseneck. Will this curvature make it impossible to drill straight Can the coiled tubing also be used to take cores Once the hole is drilled, can it be tested with coiled tubing

  9. A new stellarator coil design tool using space curves

    NASA Astrophysics Data System (ADS)

    Zhu, Caoxiang; Hudson, Stuart; Breslau, Joshua; Lazerson, Samuel; Song, Yuntao; Wan, Yuanxi

    2016-10-01

    Finding easy-to-build coils has always been critical for stellarator design. Conventional approaches assume a toroidal ``winding'' surface. Either a surface current potential is constructed using a Green's function; or a discrete set of filamentary coils lying on the winding surface is non-linearly optimized. The winding surface concept ensures that the coils are separated from the plasma surface; however, requiring the coils lie on a given winding surface may overly constrain the coil optimization process. In this work, we investigate whether a winding surface is required. Our starting point is to represent each discrete coil as an arbitrary closed curve embedded in 3D space. From the Fundamental Theorem for Curves, such curves are uniquely described by the curvature and torsion functions. Our representation does not need a winding surface and can allow coils to evolve arbitrarily. We have constructed different penalty functions, F, that incorporate both the `physics' and `engineering' constraints. The first and second derivatives of F with respect to the parameters describing the coils are constructed analytically and are exploited to enable fast optimization algorithms for finding minima. Illustrations of coils for W7X and other stellarators will be presented. China Scholarship Council.

  10. Suppressing mode instabilities by optimizing the fiber coiling methods

    NASA Astrophysics Data System (ADS)

    Tao, Rumao; Su, Rongtao; Ma, Pengfei; Wang, Xiaolin; Zhou, Pu

    2017-02-01

    Suppressing mode instabilities (MI) by optimizing the fiber coiling methods has been studied numerically. By employing our semi-analytical model, the MI threshold of two typical high power fibers in various coiling methods has been calculated. It reveals that fiber laser systems with gain fibers being coiled in cylinder shape has higher MI threshold than those with gain fibers being coiled in spiral shape, and MI-free output power of fiber lasers can be scaled up to above 3 kW even with the typical commercial fibers in the co-pumped configurations.

  11. A novel acoustically quiet coil for neonatal MRI system

    PubMed Central

    Ireland, Christopher M.; Giaquinto, Randy O.; Loew, Wolfgang; Tkach, Jean A.; Pratt, Ronald G.; Kline-Fath, Beth M.; Merhar, Stephanie L.; Dumoulin, Charles L.

    2015-01-01

    MRI acoustic exposure has the potential to elicit physiological distress and impact development in preterm and term infants. To mitigate this risk, a novel acoustically quiet coil was developed to reduce the sound pressure level experienced by neonates during MR procedures. The new coil has a conventional high-pass birdcage RF design, but is built on a framework of sound abating material. We evaluated the acoustic and MR imaging performance of the quiet coil and a conventional body coil on two small footprint NICU MRI systems. Sound pressure level and frequency response measurements were made for six standard clinical MR imaging protocols. The average sound pressure level, reported for all six imaging pulse sequences, was 82.2 dBA for the acoustically quiet coil, and 91.1 dBA for the conventional body coil. The sound pressure level values measured for the acoustically quiet coil were consistently lower, 9 dBA (range 6-10 dBA) quieter on average. The acoustic frequency response of the two coils showed a similar harmonic profile for all imaging sequences. However, the amplitude was lower for the quiet coil, by as much as 20 dBA. PMID:26457072

  12. A novel acoustically quiet coil for neonatal MRI system.

    PubMed

    Ireland, Christopher M; Giaquinto, Randy O; Loew, Wolfgang; Tkach, Jean A; Pratt, Ronald G; Kline-Fath, Beth M; Merhar, Stephanie L; Dumoulin, Charles L

    2015-08-01

    MRI acoustic exposure has the potential to elicit physiological distress and impact development in preterm and term infants. To mitigate this risk, a novel acoustically quiet coil was developed to reduce the sound pressure level experienced by neonates during MR procedures. The new coil has a conventional high-pass birdcage RF design, but is built on a framework of sound abating material. We evaluated the acoustic and MR imaging performance of the quiet coil and a conventional body coil on two small footprint NICU MRI systems. Sound pressure level and frequency response measurements were made for six standard clinical MR imaging protocols. The average sound pressure level, reported for all six imaging pulse sequences, was 82.2 dBA for the acoustically quiet coil, and 91.1 dBA for the conventional body coil. The sound pressure level values measured for the acoustically quiet coil were consistently lower, 9 dBA (range 6-10 dBA) quieter on average. The acoustic frequency response of the two coils showed a similar harmonic profile for all imaging sequences. However, the amplitude was lower for the quiet coil, by as much as 20 dBA.

  13. Synthesis, characterisation and applications of coiled carbon nanotubes.

    PubMed

    Hanus, Monica J; Harris, Andrew T

    2010-04-01

    Coiled carbon nanotubes are helical carbon structures formed when heptagonal and pentagonal rings are inserted into the hexagonal backbone of a 'straight' nanotube. Coiled carbon nanotubes have been reported with both regular and irregular helical structures. In this work the structure, growth mechanism(s), synthesis, properties and potential applications of coiled carbon nanotubes are reviewed. Published data suggests that coiled carbon nanotube synthesis occurs due to nonuniform extrusion of carbon from a catalyst surface. To date, coiled carbon nanotubes have been synthesised using catalyst modification techniques including: (i) the addition of S or P containing compounds during synthesis; (ii) the use of binary or ternary metal catalysts; (iii) the use of microwaves to create a local temperature gradient around individual catalyst particles and; (iv) the use of pH control during catalyst preparation. In most instances coiled carbon nanotubes are produced as a by-product; high yield and/or large-scale synthesis of coiled carbon nanotubes remains problematic. The qualitative analysis of coiled carbon nanotubes is currently hindered by the absence of specific characterisation data in the literature, e.g., oxidation profiles measured by thermogravimetric analysis and Raman spectra of pure coiled carbon nanotube samples.

  14. Coil Compression for Accelerated Imaging with Cartesian Sampling

    PubMed Central

    Zhang, Tao; Pauly, John M.; Vasanawala, Shreyas S.; Lustig, Michael

    2012-01-01

    MRI using receiver arrays with many coil elements can provide high signal-to-noise ratio and increase parallel imaging acceleration. At the same time, the growing number of elements results in larger datasets and more computation in the reconstruction. This is of particular concern in 3D acquisitions and in iterative reconstructions. Coil compression algorithms are effective in mitigating this problem by compressing data from many channels into fewer virtual coils. In Cartesian sampling there often are fully sampled k-space dimensions. In this work, a new coil compression technique for Cartesian sampling is presented that exploits the spatially varying coil sensitivities in these non-subsampled dimensions for better compression and computation reduction. Instead of directly compressing in k-space, coil compression is performed separately for each spatial location along the fully-sampled directions, followed by an additional alignment process that guarantees the smoothness of the virtual coil sensitivities. This important step provides compatibility with autocalibrating parallel imaging techniques. Its performance is not susceptible to artifacts caused by a tight imaging fieldof-view. High quality compression of in-vivo 3D data from a 32 channel pediatric coil into 6 virtual coils is demonstrated. PMID:22488589

  15. The Whole Elephant: A Synoptic View of Liquid Rope Coiling

    NASA Astrophysics Data System (ADS)

    Ribe, Neil

    2016-11-01

    Liquid rope coiling is the instability that occurs when e.g. a thin stream of honey is poured onto toast. While we now have a fine-grained understanding of each of the four principal coiling modes (viscous, gravitational, inertio-gravitational and inertial), we still lack a global view of how the modes cohere to form a larger whole. Using a numerical continuation procedure, I determine how the dimensionless coiling frequency depends on the dimensionless fall height and flow rate, for several values of the dimensionless nozzle diameter. Starting with the onset of coiling, I propose a purely geometrical definition of the critical surface between coiling and no coiling as the locus of points where the radius a1 of the rope at the contact point is just equal to the coil radius R. Coiling with a1 > R is impossible because the rope would intersect itself. I characterize the asymptotic limits of the critical surface as well as the structure of the supercritical volume inside that surface. The procedure reveals a new mode of coiling onset that has not yet been identified.

  16. Coil Array Design Inspired on the Kepler's Lenten Pretzel

    SciTech Connect

    Vazquez, F.; Solis, S. E.; Rodriguez, A. O.

    2008-08-11

    The RF coil arrays are an important part in Magnetic Resonance Imaging, since they are the main device for transmission and reception of the magnetic resonance signal. An RF coil array with a new configuration based on the Kepler's Lenten pretzel for the geocentric path of Mars is proposed in this work. The evenly distributed trajectories may serve as the basic configuration to form a coil array to adequately cover a region of interest for magnetic resonance experiments. The main goal is to investigate the electromagnetic properties of this coil array geometry to obtain an optimal design for its further construction. Hence, the electromagnetic properties of the coil array were numerical simulated using the finite element method and the quasi-static approach. Resulting simulations showed that there is an important concentration of magnetic field lines at the centre of the coil array. This is an advantage over other coil arrays where the magnetic field usually decreased at their geometrical centre. Both the electric and magnetic fields had also a very good uniformity. These characteristics made this coil design a good candidate for applications where the use of multi-coil technology is mandatory.

  17. Zero-plasma-current equilibria generated by tilted planar coils

    NASA Astrophysics Data System (ADS)

    Li, J.; Israeli, B.; Hammond, K. C.; Volpe, F. A.

    2016-10-01

    It is known that a periodic toroidal arrangement of tilted planar coils, combined with vertical field coils, can generate a helical magnetic field. One question, though, is: is this coil-set a generator or an amplifier of rotational transform? In other words, is a finite plasma-current needed? A numerical scan of coil-currents shows that configurations exist, for which no plasma-current is needed, and yet torsatron plasmas of finite volume can be obtained. The case of six tilted circular coils has been examined in great detail because of its relevance to the CIRCUS device operated by Columbia, a generalization of the two-tilted-coil CNT stellarator, also at Columbia. More axisymmetric configurations featuring a higher number of tilted circular coils are also being investigated. The calculations are performed with the aid of a numerical field-line tracer and the VMEC equilibrium solver, slightly modified to reflect the simplicity of the coil geometry: the coils are not discretized; instead, their field is evaluated by means of analytical expressions. This allows for faster calculations and rapid, fine scans of large parameter spaces.

  18. Double Negativity in 3D Space Coiling Metamaterials

    NASA Astrophysics Data System (ADS)

    Maurya, Santosh K.; Pandey, Abhishek; Shukla, Shobha; Saxena, Sumit

    2016-09-01

    Metamaterials displaying negative refractive index has remarkable potential to facilitate the manipulation of incident waves for wide variety of applications such as cloaking, superlensing and the like. Space-coiling approach is a recently explored technique to achieve extreme properties. The space coiling phenomena cause less energy absorption as compared to local resonating phenomena for obtaining extreme parameters. Here we show extreme properties in doubly negative 3D space coiling acoustic metamaterials. Frequency dispersive spectrum of extreme constitutive parameters has been calculated for 2D maze and 3D space coiling labyrinthine structure. This is in good agreement to the calculated acoustic band dispersion.

  19. Parametric Study of HTS Coil Quench Protection Strategies

    NASA Astrophysics Data System (ADS)

    Seibert, Joseph; Zarnstorff, Michael; Zhai, Yuhu

    2016-10-01

    Next generation fusion devices require high magnetic fields to adequately contain burning plasmas. Use of high temperature superconducting (HTS) coils to generate these magnetic fields would lower energy cost of operation as well as increase stability of the superconducting state compared to low temperature superconducting coils. However, use of HTS coils requires developing quench protection strategies to prevent damage to the coils. One technique involves the utilization of copper discs and other conductors mutually coupled to the HTS coil to quickly extract the current from the coil. Another technique allows conduction between HTS turns to reduce the current in the coil during quench. This project describes a parametric study of the HTS coil and resistive-conductor setup in order to determine limiting cases of the geometry in an attempt to optimize current extraction and coil protection during quench scenarios. This work was supported in part by the U.S. Department of Energy, Office of Science, Office of Workforce Development for Teachers and Scientists (WDTS) under the Science Undergraduate Laboratory Internship (SULI) program.

  20. Analysis of the cooldown of the ITER central solenoid model coil and insert coil

    NASA Astrophysics Data System (ADS)

    Bonifetto, R.; Brighenti, A.; Isono, T.; Martovetsky, N.; Kawano, K.; Savoldi, L.; Zanino, R.

    2017-01-01

    A series of superconducting insert coils (ICs) made of different materials has been tested since 2000 at JAEA Naka in the bore of the central solenoid model coil at fields up to 13 T and currents up to several tens of kA, fully representative of the ITER operating conditions. Here we focus on the 2015 test of the presently last IC of the series, the central solenoid (CS) insert coil, which was aimed at confirming the performance and properties of the Nb3Sn conductor, manufactured in Japan and used to wind the ITER CS modules in the US. As typical for these large scale applications, the cooldown (CD) from ambient to supercritical He temperature may take a long time, of the order of several weeks, so that it should be useful, also in the perspective of future IC tests, to optimize it. To that purpose, a comprehensive CD model implemented in the 4C code is developed and presented in this paper. The model is validated against the experimental data of an actual CD scenario, showing a very good agreement between simulation and measurements, from 300 to 4.5 K. The maximum temperature difference across the coil, which can only be roughly estimated from the measurements, is then extracted from the results of the simulation and shown to be much larger than the maximum value of 50 K, prescribed on the basis of the allowable thermal stress on the materials. An optimized CD scenario is finally designed using the model for the initial phase of the CD between 300 and 80 K, which allows reducing the needed time by ∼20%, while still satisfying the major constraints. Recommendations are also given for a better location/choice of the thermometers to be used for the monitoring of the maximum temperature difference across the coil.

  1. A Compact Non-Planar Coil Design for the SFLM Hybrid

    NASA Astrophysics Data System (ADS)

    Hagnestål, A.; Ågren, O.; Moiseenko, V. E.

    2012-08-01

    A non-planar single layer semiconductor coil set for a version of the Straight Field Line Mirror Hybrid concept with reduced magnetic field has been computed. The coil set consists of 30 coils that are somewhat similar to baseball coils with skewed sides. The coil set has been modeled with filamentary current distributions and basic scaling assumptions have been made regarding the coil widths. This coil set is expected to be considerably cheaper than a previous computed coil set. The coils can probably be produced with technologies known today.

  2. Dental MRI using wireless intraoral coils

    PubMed Central

    Ludwig, Ute; Eisenbeiss, Anne-Katrin; Scheifele, Christian; Nelson, Katja; Bock, Michael; Hennig, Jürgen; von Elverfeldt, Dominik; Herdt, Olga; Flügge, Tabea; Hövener, Jan-Bernd

    2016-01-01

    Currently, the gold standard for dental imaging is projection radiography or cone-beam computed tomography (CBCT). These methods are fast and cost-efficient, but exhibit poor soft tissue contrast and expose the patient to ionizing radiation (X-rays). The need for an alternative imaging modality e.g. for soft tissue management has stimulated a rising interest in dental magnetic resonance imaging (MRI) which provides superior soft tissue contrast. Compared to X-ray imaging, however, so far the spatial resolution of MRI is lower and the scan time is longer. In this contribution, we describe wireless, inductively-coupled intraoral coils whose local sensitivity enables high resolution MRI of dental soft tissue. In comparison to CBCT, a similar image quality with complementary contrast was obtained ex vivo. In-vivo, a voxel size of the order of 250∙250∙500 μm3 was achieved in 4 min only. Compared to dental MRI acquired with clinical equipment, the quality of the images was superior in the sensitive volume of the coils and is expected to improve the planning of interventions and monitoring thereafter. This method may enable a more accurate dental diagnosis and avoid unnecessary interventions, improving patient welfare and bringing MRI a step closer to becoming a radiation-free alternative for dental imaging. PMID:27021387

  3. MINOS near-detector coil design

    SciTech Connect

    Nelson, J.K.; Kilmer, J.; /Fermilab

    1999-08-01

    The 980-ton MINOS near detector will be installed in the new NuMI near hall at 100m below grade at Fermilab. It will be assembled from 282 1-inch thick steel plates. The planes are made from low carbon (1006), hot rolled steel and are toroidally magnetized. Each plane will be hung by two 'ears', which are extensions of the octagonal plane structure, similar to the hanging files in a file drawer. The plates have a center-to-center spacing of 5.94 cm. This document has been prepared for the 8/99 Conceptual Design Review of the MINOS near detector coil. It's main goal is to provide a set of references to previous documents and to assemble various design drawings and engineering calculations that have not been included in previous technical memos. It also provides some background material relevant for the coil implementation. Much of the text for this document is edited from the MINOS Detectors Technical Design Report.

  4. The Search Coil Magnetometer for THEMIS

    NASA Astrophysics Data System (ADS)

    Roux, A.; Le Contel, O.; Coillot, C.; Bouabdellah, A.; de La Porte, B.; Alison, D.; Ruocco, S.; Vassal, M. C.

    2008-12-01

    THEMIS instruments incorporate a tri-axial Search Coil Magnetometer (SCM) designed to measure the magnetic components of waves associated with substorm breakup and expansion. The three search coil antennas cover the same frequency bandwidth, from 0.1 Hz to 4 kHz, in the ULF/ELF frequency range. They extend, with appropriate Noise Equivalent Magnetic Induction (NEMI) and sufficient overlap, the measurements of the fluxgate magnetometers. The NEMI of the searchcoil antennas and associated pre-amplifiers is smaller than 0.76 pT /sqrt{Hz} at 10 Hz. The analog signals produced by the searchcoils and associated preamplifiers are digitized and processed inside the Digital Field Box (DFB) and the Instrument Data Processing Unit (IDPU), together with data from the Electric Field Instrument (EFI). Searchcoil telemetry includes waveform transmission, FFT processed data, and data from a filter bank. The frequency range covered depends on the available telemetry. The searchcoils and their three axis structures have been precisely calibrated in a calibration facility, and the calibration of the transfer function is checked on board, usually once per orbit. The tri-axial searchcoils implemented on the five THEMIS spacecraft are working nominally.

  5. Dental MRI using wireless intraoral coils

    NASA Astrophysics Data System (ADS)

    Ludwig, Ute; Eisenbeiss, Anne-Katrin; Scheifele, Christian; Nelson, Katja; Bock, Michael; Hennig, Jürgen; von Elverfeldt, Dominik; Herdt, Olga; Flügge, Tabea; Hövener, Jan-Bernd

    2016-03-01

    Currently, the gold standard for dental imaging is projection radiography or cone-beam computed tomography (CBCT). These methods are fast and cost-efficient, but exhibit poor soft tissue contrast and expose the patient to ionizing radiation (X-rays). The need for an alternative imaging modality e.g. for soft tissue management has stimulated a rising interest in dental magnetic resonance imaging (MRI) which provides superior soft tissue contrast. Compared to X-ray imaging, however, so far the spatial resolution of MRI is lower and the scan time is longer. In this contribution, we describe wireless, inductively-coupled intraoral coils whose local sensitivity enables high resolution MRI of dental soft tissue. In comparison to CBCT, a similar image quality with complementary contrast was obtained ex vivo. In-vivo, a voxel size of the order of 250•250•500 μm3 was achieved in 4 min only. Compared to dental MRI acquired with clinical equipment, the quality of the images was superior in the sensitive volume of the coils and is expected to improve the planning of interventions and monitoring thereafter. This method may enable a more accurate dental diagnosis and avoid unnecessary interventions, improving patient welfare and bringing MRI a step closer to becoming a radiation-free alternative for dental imaging.

  6. COOLING COIL EFFECTS ON BLENDING IN A PILOT SCALE TANK

    SciTech Connect

    Leishear, R.; Poirier, M.; Fowley, M.; Steeper, T.

    2010-08-26

    Blending, or mixing, processes in 1.3 million gallon nuclear waste tanks are complicated by the fact that miles of serpentine, vertical, cooling coils are installed in the tanks. As a step toward investigating blending interference due to coils in this type of tank, a 1/10.85 scale tank and pump model were constructed for pilot scale testing. A series of tests were performed in this scaled tank by adding blue dye to visualize blending, and by adding acid or base tracers to solution to quantify the time required to effectively blend the tank contents. The acid and base tests were monitored with pH probes, which were located in the pilot scale tank to ensure that representative samples were obtained. Using the probes, the hydronium ion concentration [H{sup +}] was measured to ensure that a uniform concentration was obtained throughout the tank. As a result of pilot scale testing, a significantly improved understanding of mixing, or blending, in nuclear waste tanks has been achieved. Evaluation of test data showed that cooling coils in the waste tank model increased pilot scale blending times by 200% in the recommended operating range, compared to previous theoretical estimates of a 10-50% increase. Below the planned operating range, pilot scale blending times were increased by as much as 700% in a tank with coils installed. One pump, rather than two or more, was shown to effectively blend the tank contents, and dual pump nozzles installed parallel to the tank wall were shown to provide optimal blending. In short, experimental results varied significantly from expectations.

  7. Four-stranded coiled-coil elastic protein in the byssus of the giant clam, Tridacna maxima.

    PubMed

    Miserez, Ali; Li, Youli; Cagnon, Joel; Weaver, James C; Waite, J Herbert

    2012-02-13

    An elastic protein with a secondary structure distinct from all well-known load-bearing proteins is found in the byssus of the giant clam, Tridacna maxima . The byssus consists of a bundle of hundreds of individual threads, each measuring about about 100 μm in diameter, which exhibit a tendon-like mechanical response. The amino acid composition of Tridacna byssus, however, is unlike tendon collagen, lacking high glycine, proline, and hydroxyproline. Wide-angle X-ray scattering (WAXS) and small-angle X-ray scattering (SAXS) measurements suggest that the constituent nanofibrils of the byssal threads are distinct from known secondary structure motifs previously reported for elastic proteins including the collagen triple-helix, the β-sheet nanocrystalline domains of silks, or the double-stranded coiled-coil regions of intermediate filaments. Instead, X-ray diffraction data indicate a structural organization in which four coiled-coil α-helices form a stable rope-like structure, which then further pack in a pseudohexagonal lattice to form nanofibrils. Amino acid composition analysis shows unusually high concentrations of acidic as well as basic residues, suggesting that the four-helix structure is stabilized by strong ionic interactions between oppositely charged residues in neighboring strands. The composition also suggests additional stabilization by disulfide cross-linking. On a larger scale, scanning and conventional transmission electron microscope (STEM and TEM) observations indicate that the nanofibrils exhibit an alternating periodicity of about 500 nm along the axial direction. A molecular model that combines the mechanical properties with the structural characteristics of the Tridacna byssal threads is proposed.

  8. A De Novo Designed Coiled-Coil Peptide with a Reversible pH-Induced Oligomerization Switch.

    PubMed

    Lizatović, Robert; Aurelius, Oskar; Stenström, Olof; Drakenberg, Torbjörn; Akke, Mikael; Logan, Derek T; André, Ingemar

    2016-06-07

    Protein conformational switches have many useful applications but are difficult to design rationally. Here we demonstrate how the isoenergetic energy landscape of higher-order coiled coils can enable the formation of an oligomerization switch by insertion of a single destabilizing element into an otherwise stable computationally designed scaffold. We describe a de novo designed peptide that was discovered to switch between a parallel symmetric pentamer at pH 8 and a trimer of antiparallel dimers at pH 6. The transition between pentamer and hexamer is caused by changes in the protonation states of glutamatic acid residues with highly upshifted pKa values in both oligomer forms. The drastic conformational change coupled with the narrow pH range makes the peptide sequence an attractive candidate for introduction of pH sensing into other proteins. The results highlight the remarkable ability of simple-α helices to self-assemble into a vast range of structural states.

  9. Characterization of the baculovirus Choristoneura fumiferana multicapsid nuclear polyhedrosis virus p10 gene indicates that the polypeptide contains a coiled-coil domain.

    PubMed

    Wilson, J A; Hill, J E; Kuzio, J; Faulkner, P

    1995-12-01

    The DNA sequence and transcription pattern of the p10 gene from the spruce budworm baculovirus Choristoneura fumiferana multicapsid nuclear polyhedrosis virus (CfMNPV) were analysed. The CfMNPV p10 gene codes for a protein 81 amino acids in length: this is the shortest p10 peptide identified thus far. A novel characteristic of the CfMNPV p10 gene is that it contains tandem late initiation sites (TAAG) having different temporal transcription patterns. Comparative analysis of CfMNPV p10 and the amino acid sequences of other p10 gene products showed that they each appear to have a similar N-terminal structure: an amphipathic alpha-helical terminus which condenses as coiled-coil multimers. Another feature of the p10 N terminus is that the central region of the coiled-coil domain resembles a bend or hairpin loop and could fold into a hairpin or form a bent rod structure. The condensation of p10 monomers to coiled-coil multimers is likely to be a step leading to the formation of p10 fibrous bodies in infected cells.

  10. High voltage fault current limiter having immersed phase coils

    SciTech Connect

    Darmann, Francis Anthony

    2014-04-22

    A fault current limiter including: a ferromagnetic circuit formed from a ferromagnetic material and including at least a first limb, and a second limb; a saturation mechanism surrounding a limb for magnetically saturating the ferromagnetic material; a phase coil wound around a second limb; a dielectric fluid surrounding the phase coil; a gaseous atmosphere surrounding the saturation mechanism.

  11. Test results from the Wendelstein 7-X stellarator demonstration coil

    NASA Astrophysics Data System (ADS)

    Heller, R.; Maurer, W.; Sapper, J.; Schauer, F.; Schönewolf, I.; Ulbricht, A.; Wüchner, F.; Zahn, G.

    2000-08-01

    Wendelstein 7-X (W 7-X) is a stellarator plasma experiment currently under construction in Greifswald, Germany. It is an advanced stellarator with a magnet system consisting of 50 non-planar superconducting main field coils and 20 superconducting planar auxiliary coils in modular toroidal arrangement. The auxiliary system is foreseen for the variation of plasma parameters which allows extensive plasma studies in wide parameter ranges. The characteristic dimensions of a coil are: 3.5 m in height, 2.5 m in width and 1.0 m in thickness. In order to prove the fabricability and the electromagnetic, thermohydraulic and mechanical performance of the coils, a full-size demonstration coil was built by industry and delivered to the Forschungszentrum Karlsruhe for testing. Here, the coil was prepared for installation at the test facility TOSKA beside the EURATOM LCT coil. This coil delivers a background field which allows the simulation of different load cases occurring later in the experimental device. The aim of the test was the investigation of the mechanical properties and behaviour of the bedding between winding block and casing. In this paper, the electromagnetic results obtained during the test will be presented.

  12. Coiled-tubing applications for blowout-control operations

    SciTech Connect

    Adams, N.J.; Mack, S.K.; Fannin, V.R.; Rocchi, T.

    1996-05-01

    Coiled-tubing drilling is now being used in various operations. Its complete field of applications is not currently established. Coiled tubing used for well control while drilling is a new field where its limits are being explored. This paper provides guidelines on topics to be considered in determining the applicability of coiled tubing for well-control problems. The information provided is based on recent field experiences with several well-control problems when drilling vent and relief wells. In some cases, coiled-tubing drilling capabilities, by necessity, were significantly extended beyond levels the industry considered to be upper limits. Well control cannot always be handled by coiled tubing. It is a special-application tool that can handle many situations and is, in some cases, clearly the optimum choice for the application. This paper presents guidelines for selecting coiled tubing for each application and discusses economics. It also describes coiled-tubing operations for regaining control of blowout wells in certain situations and gives technical requirements for planning and executing these types of jobs. Case histories where coiled-tubing units (CTU`s) have been used to regain control of drilling and producing wells are provided for illustration.

  13. Downhole control -- The key to coiled tubing drilling efficiency

    SciTech Connect

    1996-10-01

    Coiled tubing drilling has experienced dramatic growth in recent years. Originally a step-child, the technique now claims built-for-purpose equipment and promises cost-effective drilling with little damage to formations. The paper describes a bottom hole assembly and an orienting tool designed to be used to control coiled tubing drilling.

  14. Nondestructive evaluation of new coiled tubing and pipe

    SciTech Connect

    Stanley, R.K.

    1996-09-01

    The nondestructive testing (NDT) and evaluation (NDE) of coiled tubing and pipe during manufacture has not previously been described. This paper outlines the NDE methods employed during the production of such material, along with flaw removal criteria. This paper describes coiled tubing and pipe up to 3.5 inches diameter for both downhole and line pipe use.

  15. Impulse and Frequency Response of a Moving Coil Galvanometer.

    ERIC Educational Resources Information Center

    McNeill, D. J.

    1985-01-01

    Describes an undergraduate laboratory experiment in which a moving coil galvanometer is studied and the electromotive force generated by the swinging coil provides the impulse response information in a form suitable for digitizing and inputing to a microcomputer. Background information and analysis of typical data are included. (JN)

  16. Coil planet centrifugation as a means for small particle separation

    NASA Technical Reports Server (NTRS)

    Herrmann, F. T.

    1983-01-01

    The coil planet centrifuge uses a centrifugal force field to provide separation of particles based on differences in sedimentation rates by flow through a rotating coiled tube. Three main separations are considered: (1) single phase fresh sheep and human erythrocytes, (2) single phase fixed heep and human erythrocytes, and (3) electrophoretically enhanced single phase fresh sheep and human erythrocytes.

  17. Dollo's law and the re-evolution of shell coiling.

    PubMed Central

    Collin, Rachel; Cipriani, Roberto

    2003-01-01

    Gastropods have lost the quintessential snail feature, the coiled shell, numerous times in evolution. In many cases these animals have developed a limpet morphology with a cap-shaped shell and a large foot. Limpets thrive in marginal habitats such as hydrothermal vents, the high-energy rocky intertidal areas and fresh water, but they are considered to be evolutionary dead-ends, unable to re-evolve a coiled shell and therefore unable to give rise to the diversity seen among coiled snails. The re-evolution of a coiled shell, or any complex character, is considered unlikely or impossible (Dollo's law) because the loss of the character is followed by the loss of the genetic architecture and developmental mechanisms that underlie that character. Here, we quantify the level of coiling in calyptraeids, a family of mostly uncoiled limpets, and show that coiled shells have re-evolved at least once within this family. These results are the first demonstration, to our knowledge, of the re-evolution of coiling in a gastropod, and show that the developmental features underlying coiling have not been lost during 20-100 Myr of uncoiled evolutionary history. This is the first example of the re-evolution of a complex character via a change in developmental timing (heterochrony) rather than a change in location of gene expression (heterotopy). PMID:14728776

  18. Bipolar electrical coil based on YBCO bulks: initial tests

    NASA Astrophysics Data System (ADS)

    Alvarez, A.; Suárez, P.; Ceballos, J. M.; Pérez, B.; Werfel, F.; Floegel-Delor, U.

    2008-02-01

    In the field of the application of HTS in electrical motors, most prototypes are made using superconducting coils based on tape and located in the position where copper coils work in a similar conventional motor. Other prototypes use superconducting bulks (usually disk-shaped) in those positions where normal magnets should work in similar conventional motors. But it is very unusual to find designs using electrical coils based on bulks. This is a challenge whose main problem is the difficulty in machining the superconductor bulks to get the proper shape because of the impossibility of bending the material to wind coils. The design of a bipolar single-turn coil made from a superconducting YBCO disk was proposed by the group of Electrical Application of Superconductors, at the University of Extremadura, several years ago to be an element for the design of a modular two-phase inductor for an air core axial-flux motor. The shape of each coil looks like an 'S'. When a current flows through the circuit, two opposite magnetic fields appear in the upper and lower halves of the piece. Until now, attempts to get a good superconducting circuit by cutting a YBCO disk into the required shape have failed because of cracks appearing in the crystal during the process. Last year, our group at the University of Extremadura began to work with ATZ GmbH who have improved the machining process and made the coils. In this paper we present the coil and the first tests carried out.

  19. 13. ROOM 40, LOOKING WEST FROM THE RUBENS COIL. SPINNER ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    13. ROOM 40, LOOKING WEST FROM THE RUBENS COIL. SPINNER MAGNETOMETER IS VISIBLE AT FAR LEFT, AND THE RUBENS COIL CONTROL UNIT AT FAR RIGHT. - U.S. Geological Survey, Rock Magnetics Laboratory, 345 Middlefield Road, Menlo Park, San Mateo County, CA

  20. Transverse low-field RF coils in MRI.

    PubMed

    Claasen-Vujcić, T; Borsboom, H M; Gaykema, H J; Mehlkopf, T

    1996-07-01

    Imaging at low fields imposes a number of nonstandard requirements on the RF coil. At low fields, coil losses are dominant over patient losses. This means that even more stress is put on the quality factor Q. Furthermore, the low frequency also implies a high inductance L and/or a high capacitance C product. Just increasing the capacitance C results in a difficult optimal matching to the preamplifier as well as increased costs and higher complexity of the resonator construction. Coils with a high quality factor Q and a high inductance are thus required at low fields. Birdcage coils possess a number of advantages over saddle and solenoidal coils. However, the currently used birdcages have inherently low inductances limited by the size of the coil. The problem can be solved by a novel design in which the strip configuration for inductors is abandoned and the inductors are realized as a certain number of turns. The Q factor can be further improved by using Litz wire. Three novel transverse RF coils with high inductances are presented and compared with each other as well as to the standard coils. Both linear and quadrature modes are discussed.

  1. Bioaerosol deposition on an air-conditioning cooling coil

    NASA Astrophysics Data System (ADS)

    Wu, Yan; Chen, Ailu; Luhung, Irvan; Gall, Elliott T.; Cao, Qingliang; Chang, Victor Wei-Chung; Nazaroff, William W.

    2016-11-01

    This study is concerned with the role of a fin-and-tube heat exchanger in modifying microbial indoor air quality. Specifically, depositional losses of ambient bioaerosols and particles onto dry (not cooled) and wet (cool) coil surfaces were measured for different airspeeds passing through the test coil. Total, bacterial and fungal DNA concentrations in condensate water produced by a wet coil were also quantified by means of fluorescent dsDNA-binding dye and qPCR assays. Results revealed that the deposition of bioaerosols and total particles is substantial on coil surfaces, especially when wet and cool. The average deposition fraction was 0.14 for total DNA, 0.18 for bacterial DNA and 0.22 for fungal DNA on the dry coil, increasing to 0.51 for total DNA, 0.50 for bacterial DNA and 0.68 for fungal DNA on the wet coil. Overall, as expected, deposition fractions increased with increasing particle size and increasing airspeed. Deposited DNA was removed from the cooling coil surfaces through the flow of condensing water at a rate comparable to the rate of direct deposition from air. A downward trend of bacterial and fungal DNA measured in condensate water over time provides suggestive evidence of biological growth on heat exchangers during nonoperational times of a ventilation system. This investigation provides new information about bioaerosol deposition onto a conventional fin-and-tube cooling coil, a potentially important factor influencing indoor exposure to microbial aerosols in air-conditioned buildings.

  2. Performance correlation between YBa2Cu3O7-δ coils and short samples for coil technology development

    NASA Astrophysics Data System (ADS)

    Wang, X.; Dietderich, D. R.; Godeke, A.; Gourlay, S. A.; Marchevsky, M.; Prestemon, S. O.; Sabbi, G. L.

    2016-06-01

    A robust fabrication technology is critical to achieve the high performance in YBa2Cu3O{}7-δ (YBCO) coils as the critical current of the brittle YBCO layer is subject to the strain-induced degradation during coil fabrication. The expected current-carrying capability of the magnet and its temperature dependence are two key inputs to the coil technology development. However, the expected magnet performance is not straightforward to determine because the short-sample critical current depends on both the amplitude and orientation of the applied magnetic field with respect to the broad surface of the tape-form conductor. In this paper, we present an approach to calculate the self-field performance limit for YBCO racetrack coils at 77 and 4.2 K. Critical current of short YBCO samples was measured as a function of the applied field perpendicular to the conductor surface from 0 to 15 T. This field direction limited the conductor critical current. Two double-layer racetrack coils, one with three turns and the other with 10 turns, were wound and tested at 77 and 4.2 K. The test coils reached at least 80% of the expected critical current. The ratio between the coil critical currents at 77 and 4.2 K agreed well with the calculation. We conclude that the presented approach can determine the performance limit in YBCO racetrack coils based on the short-sample critical current and provide a useful guideline for assessing the coil performance and fabrication technology. The correlation of the coil critical current between 77 K and 4.2 K was also observed, allowing the 77 K test to be a cost-effective tool for the development of coil technology.

  3. Design and optimization of efficient magnetic coils for biomedical applications

    NASA Astrophysics Data System (ADS)

    Ram Rakhyani, Anil Kumar

    Magnetic fields are permeable to the biological tissues and can induce electric field in the conductive structures. Some medical devices take advantage of this ability to transfer energy from the source to the receiving site without direct contact. Prosthetic devices such as retinal implants use time-varying magnetic field to achieve wireless power transfer to the implanted magnetic coil. However, devices such as magnetic stimulators use the induction principle to create an electric field at the stimulation site. Efficiency of these devices is primarily dependent on the design of the magnetic coils. Therefore, in this work, we designed and validated efficient magnetic coils for wireless power transfer to implanted devices and magnetic stimulation of the peripheral nerves. Typical wireless power transfer (WPT) systems uses two-coil based design to achieve contactless power transfer to the implanted electronics. These systems achieve low power transfer efficiency (< 30%) and frequency bandwidth. Moreover, efficient wireless system requires high coupling and load variation tolerance during device operation. To design an electromagnetic safe WPT system, the power absorbed by the tissue and radiated field due to the proximal magnetic coils needs to be minimized. In this work, we proposed a multi-coil power transfer system which solves some of the current challenges. The proposed multi-coil WPT system achieves more than twice the power transfer efficiency, controllable voltage gain, wider frequency bandwidth, higher tolerance to coupling and load variations, lower absorbed power in the tissue and lower radiated field from the magnetic coil than a comparable two-coil system. In this work, we have developed analytic models of the multi-coil WPT system and validated the accuracy of the solutions using experiments. Magnetic coils play an important role in controlling the distribution of induced electric field inside the nerve during magnetic stimulation. In the past

  4. Design and Analysis of the ITER Vertical Stability Coils

    SciTech Connect

    Peter H. Titus, et. al.

    2012-09-06

    The ITER vertical stability (VS) coils have been developed through the preliminary design phase by Princeton Plasma Physics Laboratory (PPPL). Final design, prototyping and construction will be carried out by the Chinese Participant Team contributing lab, Institute of Plasma Physics, Chinese Academy of Sciences (ASIPP). The VS coils are a part of the in-vessel coil systems which include edge localized mode (ELM) coils as well as the VS coils. An overview of the ELM coils is provided in another paper at this conference. 15 The VS design employs four turns of stainless steel jacketed mineral insulated copper (SSMIC) conductors The mineral insulation is Magnesium Oxide (MgO). Joule and nuclear heat is removed by water flowing at 3 m/s through the hollow copper conductor. A key element in the design is that slightly elevated temperatures in the conductor and its support spine during operation impose compressive stresses that mitigate fatigue damage. Away from joints, and break-outs, conductor thermal stresses are low because of the axisymmetry of the winding (there are no corner bends as in the ELM coils).The 120 degree segment joint, and break-out or terminal regions are designed with similar but imperfect constraint compared with the ring coil portion of the VS. The support for the break-out region is made from a high strength copper alloy, CuCrZr. This is needed to conduct nuclear heat to the actively cooled conductor and to the vessel wall. The support "spine" for the ring coil portion of the VS is 316 stainless steel, held to the vessel with preloaded 718 bolts. Lorentz loads resulting from normal operating loads, disruption loads and loads from disruption currents in the support spine shared with vessel, are applied to the VS coil. The transmission of the Lorentz and thermal expansion loads from the "spine" to the vessel rails is via friction augmented with a restraining "lip" to ensure the coil frictional slip is minimal and acceptable. Stresses in the coil

  5. New directions in the design of MRI gradient coils

    NASA Astrophysics Data System (ADS)

    Baig, Tanvir Noor

    In this dissertation new designs for gradient coils are presented. The principal work is on better shielding for fringe field reduction. Fringe fields from gradient coils produce eddy currents in surrounding metal structures. Such eddy currents can degrade image quality and lead to acoustic noise. The acoustic effects are magnified for high-field Magnetic Resonance Imaging (MRI) scanners because of increased Lorentz forces. Conventional actively shielded gradient assemblies consist of primary and secondary coils in the shape of cylindrical shells surrounding the imaging volume. One of the principal regions of field leakage is at the ends of the gradient structure, and these fields are responsible for substantial eddy current generation. Our new shielded gradient coil designs that feature the inclusion of an endcap have significantly reduced fringe field at the cryostat inner bore. We discuss the degree to which the suppression of peak fringe fields corresponds to a reduction in the acoustic noise generated near the end of the warm bore. Energy efficient capped actively shielded elliptical gradient coils are also designed. In comparison with traditional uncapped elliptical designs the newly proposed design substantially reduces the fringe field at the inner cryostat bore. And compared to a cylindrical design (with a diameter matched to the elliptical semi-major axis), a good reduction in magnetic energy is observed. In addition, a design for a very short, symmetrical, and winged X-gradient insertable head coil is presented. With a smaller radius, an insertable head gradient coil has the advantage of less stored magnetic energy. The corresponding smaller inductance leads to higher slew rates. Lower torque from Lorentz forces is another advantage for these coils. When designing an insertable head coil one must remember the geometry is impacted by the shoulders. In consequence, asymmetric unshielded and shielded designs have been developed. Gradient designs with a

  6. Lessons Learned During the Manufacture of the NCSX Modular Coils

    SciTech Connect

    James H. Chrzanowski,Thomas G. Meighan, Steven Raftopoulos and Lawrence Dudek and Paul J. Fogarty

    2009-09-15

    The National Compact Stellarator Experiment's (NCSX) modular coils presented a number of engineering and manufacturing challenges due to their complex shapes, requirements for high dimensional accuracy and high current density requirements due to space constraints. Being the first of their kind, these coils required the implementation of many new manufacturing and measuring techniques and procedures. This was the first time that these manufacturing techniques and methods were applied in the production of coils at the laboratory. This resulted in a steep learning curve for the first several coils. Through the effective use of procedures, tooling modifications, involvement and ownership by the manufacturing workforce, and an emphasis on safety, the assembly team was able to reduce the manufacturing times and improve upon the manufacturing methods. This paper will discuss the learning curve and steps that were taken to improve the manufacturing efficiency and reduce the manufacturing times for the modular coils without forfeiting quality.

  7. TEST PLAN FOR MONITORING COOLING COILS IN A LABORATORY SETTING

    SciTech Connect

    Don B. Shirey, III

    2002-04-01

    The objective of this research project is to understand and quantify the moisture removal performance of cooling coils at part-load conditions. The project will include a comprehensive literature review, detailed measurement of cooling coil performance in a laboratory facility, monitoring cooling systems at several field test sites, and development/validation of engineering models that can be used in energy calculations and building simulations. This document contains the detailed test plan for monitoring cooling coil performance in a laboratory setting. Detailed measurements will be taken on up to 10 direct expansion (DX) and chilled water cooling coils in various configurations to understand the impact of coil geometry and operating conditions on transient moisture condensation and evaporation.

  8. New head gradient coil design and construction techniques

    PubMed Central

    Handler, William B; Harris, Chad T; Scholl, Timothy J; Parker, Dennis L; Goodrich, K Craig; Dalrymple, Brian; Van Sass, Frank; Chronik, Blaine A

    2013-01-01

    Purpose To design and build a head insert gradient coil to use in conjunction with body gradients for superior imaging. Materials and Methods The use of the Boundary Element Method to solve for a gradient coil wire pattern on an arbitrary surface has allowed us to incorporate engineering changes into the electromagnetic design of a gradient coil directly. Improved wire pattern design has been combined with robust manufacturing techniques and novel cooling methods. Results The finished coil had an efficiency of 0.15 mT/m/A in all three axes and allowed the imaging region to extend across the entire head and upper part of the neck. Conclusion The ability to adapt your electromagnetic design to necessary changes from an engineering perspective leads to superior coil performance. PMID:24123485

  9. More collapse tests add to coiled tubing applications

    SciTech Connect

    Walker, E.J. ); Costall, D. )

    1991-06-17

    The collapse limits of thicker-walled coiled tubing have been determined to ensure safe and successful workover operations. Prudhoe Bay has been using 1.75-in OD coiled tubing for 2 years. When BP Exploration (Alaska) Inc. initially started using this larger size coil, collapse tests were run on 0.109-in. wall thickness coil. These tests provide a base curve by which much work has been performed in the western operating area of the Prudhoe Bay Unit. However, use of 1.75-in. coiled tubing has been expanded to include wall thickness of 0.125, 0.134, and 0.156-in. Except for theoretical calculations, no data were available to ensure that we would know the collapsed limitations for these sizes. To fill in this gap, further collapse testing has been done.

  10. Virtual coiling of intracranial aneurysms based on dynamic path planning.

    PubMed

    Morales, Hernán G; Larrabide, Ignacio; Kim, Minsuok; Villa-Uriol, Maria-Cruz; Macho, Juan M; Blasco, Jordi; San Roman, Luis; Frangi, Alejandro F

    2011-01-01

    Coiling is possibly the most widespread endovascular treatment for intracranial aneurysms. It consists in the placement of metal wires inside the aneurysm to promote blood coagulation. This work presents a virtual coiling technique for pre-interventional planning and post-operative assessment of coil embolization procedure of aneurysms. The technique uses a dynamic path planning algorithm to mimic coil insertion inside a 3D aneurysm model, which allows to obtain a plausible distribution of coils within a patient-specific anatomy. The technique was tested on two idealized geometries: an sphere and a hexahedron. Subsequently, the proposed technique was applied in 10 realistic aneurysm geometries to show its reliability in anatomical models. The results of the technique was compared to digital substraction angiography images of two aneurysms.

  11. A Phased Array Coil for Human Cardiac Imaging

    PubMed Central

    Constantinides, Chris D.; Westgate, Charles R.; O'Dell, Walter G.; Zerhouni, Elias A.; McVeigh, Elliot R.

    2007-01-01

    A prototype cardiac phased array receiver coil was constructed that comprised a cylindrical array and a separate planar array. Both arrays had two coil loops with the same coil dimensions. Data acquisition with the cylindrical array placed on the human chest, and the planar array placed under the back, yielded an overall enhancement of the signal-to-noise ratio (SNR) over the entire heart by a factor of 1.1–2.85 over a commercially available flexible coil and a commercially available four-loop planar phased array coil. This improvement in SNR can be exploited in cardiac imaging to increase the spatial resolution and reduce the image acquisition time. PMID:7674903

  12. Coil embolization through the Marathon microcatheter: Advantages and pitfalls.

    PubMed

    Beckett, Joel S; Duckwiler, Gary R; Tateshima, Satoshi; Szeder, Viktor; Jahan, Reza; Gonzalez, Nestor; Vinuela, Fernando

    2017-02-01

    Due to technical limitations, small, distal, and tortuous intracranial pathology is sometimes out of reach of the current armamentarium of microcatheters designed for intracranial coil embolization. The Marathon microcatheter (Medtronic, Minneapolis, Minnesota, USA), designed specifically for the delivery of Onyx, is longer and more flexible than most coil delivery catheters. We report on nine patients (three with arteriovenous fistula, three with arteriovenous malformation, two with intracranial aneurysm, and one with tumor) where Marathon was used to deliver commercially available platinum coils. We also conducted laboratory compatibility testing and conclude that the Marathon can be used as a coil delivery catheter for Barricade coils (Blockade Medical, Irvine, California, USA) with diameter less than 0.012 in.

  13. Electromagnetic design of superconducting dipoles based on sector coils

    NASA Astrophysics Data System (ADS)

    Rossi, L.; Todesco, Ezio

    2007-11-01

    We study the coil layouts of superconducting dipoles for particle accelerators based on the sector geometry. We show that a simple model based on a sector coil with a wedge allows us to derive an equation giving the short sample field as a function of the aperture, coil width, cable properties, and superconducting material. The equation agrees well with the actual results of several dipole coils that have been built in the past 30 years. The improvements due to the grading technique and the iron yoke are also studied. The proposed equation can be used as a benchmark to judge the efficiency of the coil design, and to carry out a global optimization of an accelerator layout.

  14. Vehicle to wireless power transfer coupling coil alignment sensor

    DOEpatents

    Miller, John M.; Chambon, Paul H.; Jones, Perry T.; White, Clifford P.

    2016-02-16

    A non-contacting position sensing apparatus includes at least one vehicle-mounted receiver coil that is configured to detect a net flux null when the vehicle is optimally aligned relative to the primary coil in the charging device. Each of the at least one vehicle-mounted receiver coil includes a clockwise winding loop and a counterclockwise winding loop that are substantially symmetrically configured and serially connected to each other. When the non-contacting position sensing apparatus is located directly above the primary coil of the charging device, the electromotive forces from the clockwise winding loop and the counterclockwise region cancel out to provide a zero electromotive force, i.e., a zero voltage reading across the coil that includes the clockwise winding loop and the counterclockwise winding loop.

  15. Knots and Coils in Superfluid Vortices

    NASA Astrophysics Data System (ADS)

    Kleckner, Dustin; Proment, Davide; Scheeler, Martin; Irvine, William T. M.

    2014-11-01

    Recent work has demonstrated that linked and knotted vortices will spontaneously unknot or untie in both classical fluids and superfluids. This effect would appear to jeopardize any notion of conservation of fluid topology (helicity), but this need not be the case: vortices can transfer their knottedness to helical coils, preserving some measure of the original topology. By simulating superfluid vortices in the Gross-Pitaevskii equation, we find a geometric mechanism for efficiently transferring helicity in exactly this manner. Remarkably, the same transfer of topology to geometry also appears in viscous fluid vortices, suggesting it is a generic feature of non-ideal fluids. This work was supported by the NSF MRSEC shared facilities at the University of Chicago (DMR-0820054) and an NSF CAREER Award (DMR-1351506). W.T.M.I. further acknowledges support from the A.P. Sloan Foundation and the Packard Foundation.

  16. Sidetracking technology for coiled-tubing drilling

    SciTech Connect

    Leising, L.J.; Doremus, D.M.; Hearn, D.D.; Rike, E.A.; Paslay, P.R.

    1996-05-01

    Coiled-tubing (CT) drilling is a rapidly growing new technology that has been used for shallow new wells and re-entry applications. Through-tubing drilling has evolved as a major application for CT drilling. The remaining key enabling technology for viable through-tubing drilling is the ability to sidetrack in casing below the tubing tail. This paper describes the three technologies developed for sidetracking and presents a mathematical model of forces, penetration rates, and torques for window milling with the cement-sidetracking (CS) technique. Window milling has been a seat of the pants operation in the past. To the authors` knowledge, this is the first published work on the mechanics of window milling. The results from several yard tests and one field test are presented and show some of the problems associated with sidetracking.

  17. Transformer current sensor for superconducting magnetic coils

    DOEpatents

    Shen, Stewart S.; Wilson, C. Thomas

    1988-01-01

    A transformer current sensor having primary turns carrying a primary current for a superconducting coil and secondary turns only partially arranged within the primary turns. The secondary turns include an active winding disposed within the primary turns and a dummy winding which is not disposed in the primary turns and so does not experience a magnetic field due to a flow of current in the primary turns. The active and dummy windings are wound in opposite directions or connected in series-bucking relationship, and are exposed to the same ambient magnetic field. Voltages which might otherwise develop in the active and dummy windings due to ambient magnetic fields thus cancel out. The resultant voltage is purely indicative of the rate of change of current flowing in the primary turns.

  18. Rho-associated coiled-coil containing kinases (ROCK): structure, regulation, and functions.

    PubMed

    Julian, Linda; Olson, Michael F

    2014-01-01

    Rho-associated coiled-coil containing kinases (ROCK) were originally identified as effectors of the RhoA small GTPase. (1)(-) (5) They belong to the AGC family of serine/threonine kinases (6) and play vital roles in facilitating actomyosin cytoskeleton contractility downstream of RhoA and RhoC activation. Since their discovery, ROCK kinases have been extensively studied, unveiling their manifold functions in processes including cell contraction, migration, apoptosis, survival, and proliferation. Two mammalian ROCK homologs have been identified, ROCK1 (also called ROCK I, ROKβ, Rho-kinase β, or p160ROCK) and ROCK2 (also known as ROCK II, ROKα, or Rho kinase), hereafter collectively referred to as ROCK. In this review, we will focus on the structure, regulation, and functions of ROCK.

  19. Thermodynamic aspects in a simplified model for the folding of two-stranded coiled-coils

    NASA Astrophysics Data System (ADS)

    Prolongo, Silvia G.; Rubio, Ana M.; Rey, Antonio

    2000-12-01

    We have investigated the thermodynamic properties of a simple model representing the thermal folding/unfolding transition of two-stranded coiled-coils. The transition temperature and the energy change for the process are analyzed in terms of the peptide concentration, using the standard properties and calculations involved in experimental work. The integration of the heat capacity curves provides realistic and correct results for the model, as it does the variation of the transition temperature with concentration. On the other hand, the van't Hoff analysis of the equilibrium constant for the unfolding process produces apparently odd results. They can only be rationalized through a careful analysis of the reaction stoichiometry, according to the reference state defined for the very simple model interactions, and the definition of the unfolded state. This point is extensively discussed, for its possible implications in the correct analysis of this and other simulation models.

  20. Integration of Rotation and Piston Motions in Coiled-Coil Signal Transduction▿

    PubMed Central

    Gao, Rong; Lynn, David G.

    2007-01-01

    A coordinated response to a complex and dynamic environment requires an organism to simultaneously monitor and interpret multiple signaling cues. In bacteria and some eukaryotes, environmental responses depend on the histidine autokinases (HKs). For example, VirA, a large integral membrane HK from Agrobacterium tumefaciens, regulates the expression of virulence genes in response to signals from multiple molecular classes (phenol, pH, and sugar). The ability of this pathogen to perceive inputs from different known host signals within a single protein receptor provides an opportunity to understand the mechanisms of signal integration. Here we exploited the conserved domain organization of the HKs and engineered chimeric kinases to explore the signaling mechanisms of phenol sensing and pH/sugar integration. Our data implicate a piston-assisted rotation of coiled coils for integration of multiple inputs and regulation of critical responses during pathogenesis. PMID:17573470

  1. A coiled coil switch mediates cold sensing by the thermosensory protein DesK.

    PubMed

    Saita, Emilio; Abriata, Luciano A; Tsai, Yi Ting; Trajtenberg, Felipe; Lemmin, Thomas; Buschiazzo, Alejandro; Dal Peraro, Matteo; de Mendoza, Diego; Albanesi, Daniela

    2015-10-01

    The thermosensor histidine kinase DesK from Bacillus subtilis senses changes in membrane fluidity initiating an adaptive response. Structural changes in DesK have been implicated in transmembrane signaling, but direct evidence is still lacking. On the basis of structure-guided mutagenesis, we now propose a mechanism of DesK-mediated signal sensing and transduction. The data indicate that stabilization/destabilization of a 2-helix coiled coil, which connects the transmembrane sensory domain of DesK to its cytosolic catalytic region, is crucial to control its signaling state. Computational modeling and simulations reveal couplings between protein, water and membrane mechanics. We propose that membrane thickening is the main driving force for signal sensing and that it acts by inducing helix stretching and rotation prompting an asymmetric kinase-competent state. Overall, the known structural changes of the sensor kinase, as well as further dynamic rearrangements that we now predict, consistently link structure determinants to activity modulation.

  2. De novo designed coiled-coil proteins with variable conformations as components of molecular electronic devices.

    PubMed

    Shlizerman, Clara; Atanassov, Alexander; Berkovich, Inbal; Ashkenasy, Gonen; Ashkenasy, Nurit

    2010-04-14

    Conformational changes of proteins are widely used in nature for controlling cellular functions, including ligand binding, oligomerization, and catalysis. Despite the fact that different proteins and artificial peptides have been utilized as electron-transfer mediators in electronic devices, the unique propensity of proteins to switch between different conformations has not been used as a mechanism to control device properties and performance. Toward this aim, we have designed and prepared new dimeric coiled-coil proteins that adopt different conformations due to parallel or antiparallel relative orientations of their monomers. We show here that controlling the conformation of these proteins attached as monolayers to gold, which dictates the direction and magnitude of the molecular dipole relative to the surface, results in quantitative modulation of the gold work function. Furthermore, charge transport through the proteins as molecular bridges is controlled by the different protein conformations, producing either rectifying or ohmic-like behavior.

  3. Sidetracking technology for coiled tubing drilling

    SciTech Connect

    Leising, L.J.; Hearn, D.D.; Rike, E.A.

    1995-12-31

    Coiled tubing (CT) drilling is a rapidly growing new technology that has been used for shallow new wells and reentry applications. A new market has evolved as being a major application for CT drilling. This market is through-tubing drilling. The lower cost of mobilization of a coiled tubing unit (CTU) to an offshore platform or Arctic wellsite vs. a rotary rig provides additional economic incentive. In addition, the ease of drilling 4-3/4-in. and smaller boreholes with CT is an advantage in a region which does not have an established practice of slimhole drilling. The remaining key enabling technology for viable through-tubing drilling is the ability to sidetrack in casing below the tubing tail. The three technologies (cement sidetracking, whipstock in cement, and through-tubing whipstock) that have been developed for sidetracking are described in this paper. A mathematical model of forces, penetration rates, and torques for window milling with the cement sidetracking technique is presented. Window milling has been a {open_quotes}seat of the pants{close_quotes} operation in the past, to the authors` knowledge, this is the first published work on the mechanics of window milling. The analysis has shed much light on the interaction between motor bending stiffness, motor bend angle, and allowable advance rates for {open_quotes}time drilling.{close_quotes} The results from several yard tests are presented, and indicate some of the problems associated with sidetracking. The photographs of the sectioned hole/window illustrate the ledges caused downhole from {open_quotes}minor{close_quotes} bottomhole assembly (BHA) changes. The cement sidetrack technique has been successfully applied many times in the field, and the results of one of these field applications is presented.

  4. Treatment of Intracranial Aneurysms: Clipping Versus Coiling.

    PubMed

    Liu, Ann; Huang, Judy

    2015-09-01

    Intracranial aneurysms (IAs) have an estimated incidence of up to 10 % and can lead to serious morbidity and mortality. Because of this, the natural history of IAs has been studied extensively, with rupture rates ranging from 0.5 to 7 %, depending on aneurysm characteristics. The spectrum of presentation of IAs ranges from incidental detection to devastating subarachnoid hemorrhage. Although the gold standard imaging technique is intra-arterial digital subtraction angiography, other modalities such as computed tomography angiography (CTA) and magnetic resonance angiography (MRA) are being increasingly used for screening and treatment planning. Management of these patients depends upon a number of factors including aneurysmal, patient, institutional, and operator factors. The ultimate goal of treating patients with IAs is complete and permanent occlusion of the aneurysm sac in order to eliminate future hemorrhagic risk, while preserving or restoring the patient's neurological function. The most common treatment approaches include microsurgical clipping and endovascular coiling, and multiple studies have compared these two techniques. To date, three large prospective, randomized studies have been done: a study from Finland, International Subarachnoid Aneurysm Trial (ISAT), and the Barrow Ruptured Aneurysm Trial (BRAT). Despite differences in methodology, the results were similar: in patients undergoing coiling, although rates of rebleeding and retreatment are higher, the overall rate of poor outcomes at 12 months was significantly lower. As minimally invasive procedures and devices continue to be refined, endovascular strategies are likely to increase in popularity. However, as long-term outcome studies become available, it is increasingly apparent that they are complementary treatment strategies, with patient selection of critical importance.

  5. The intrinsic factor-vitamin B12 receptor, cubilin, is assembled into trimers via a coiled-coil alpha-helix.

    PubMed

    Lindblom, A; Quadt, N; Marsh, T; Aeschlimann, D; Mörgelin, M; Mann, K; Maurer, P; Paulsson, M

    1999-03-05

    A large protein was purified from bovine kidney, using selective extraction with EDTA to solubilize proteins anchored by divalent cation-dependent interactions. An antiserum raised against the purified protein labeled the apical cell surface of the epithelial cells in proximal tubules and the luminal surface of small intestine. Ten peptide sequences, derived from the protein, all matched the recently published sequences for rat (Moestrup, S. K., Kozyraki, R., Kristiansen, M., Kaysen, J. H., Holm Rasmussen, H., Brault, D., Pontillon, F., Goda, F. O., Christensen, E. I., Hammond, T. G., and Verroust, P. J. (1998) J. Biol. Chem. 273, 5235-5242) and human cubilin, a receptor for intrinsic factor-vitamin B12 complexes, identifying the protein as bovine cubilin. In electron microscopy, a three-armed structure was seen, indicating an oligomerization of three identical subunits. This model was supported by the Mr values of about 1,500,000 for the intact protein and 440,000 for its subunits obtained by analytical ultracentrifugation. In a search for a potential assembly domain, we identified a region of heptad repeats in the N-terminal part of the cubilin sequence. Computer-assisted analysis supported the presence of a coiled-coil alpha-helix between amino acids 103 and 132 of the human cubilin sequence and predicted the formation of a triple coiled-coil. We therefore conclude that cubilin forms a noncovalent trimer of identical subunits connected by an N-terminal coiled-coil alpha-helix.

  6. Analysis and experimental study of wireless power transfer with HTS coil and copper coil as the intermediate resonators system

    NASA Astrophysics Data System (ADS)

    Wang, Xiufang; Nie, Xinyi; Liang, Yilang; Lu, Falong; Yan, Zhongming; Wang, Yu

    2017-01-01

    Intermediate resonator (repeater) between transmitter and receiver can significantly increase the distance of wireless power transfer (WPT) and the efficiency of wireless power transfer. The wireless power transfer via strongly coupled magnetic resonances with an high temperature superconducting (HTS) coil and copper coil as intermediate resonators was presented in this paper. The electromagnetic experiment system under different conditions with different repeating coils were simulated by finite element software. The spatial distribution patterns of magnetic induction intensity at different distances were plotted. In this paper, we examined transfer characteristics with HTS repeating coil and copper repeating coil at 77 K and 300 K, respectively. Simulation and experimental results show that HTS and copper repeating coil can effectively enhance the space magnetic induction intensity, which has significant effect on improving the transmission efficiency and lengthening transmission distance. We found that the efficiency and the distance of wireless power transfer system with an HTS coil as repeater is much higher by using of copper coil as repeater.

  7. Crystal Structure of the Human Short Coiled Coil Protein and Insights into SCOC-FEZ1 Complex Formation

    PubMed Central

    Behrens, Caroline; Binotti, Beyenech; Schmidt, Carla; Robinson, Carol V.; Chua, John Jia En; Kühnel, Karin

    2013-01-01

    The short coiled coil protein (SCOC) forms a complex with fasciculation and elongation protein zeta 1 (FEZ1). This complex is involved in autophagy regulation. We determined the crystal structure of the coiled coil domain of human SCOC at 2.7 Å resolution. SCOC forms a parallel left handed coiled coil dimer. We observed two distinct dimers in the crystal structure, which shows that SCOC is conformationally flexible. This plasticity is due to the high incidence of polar and charged residues at the core a/d-heptad positions. We prepared two double mutants, where these core residues were mutated to either leucines or valines (E93V/K97L and N125L/N132V). These mutations led to a dramatic increase in stability and change of oligomerisation state. The oligomerisation state of the mutants was characterized by multi-angle laser light scattering and native mass spectrometry measurements. The E93V/K97 mutant forms a trimer and the N125L/N132V mutant is a tetramer. We further demonstrate that SCOC forms a stable homogeneous complex with the coiled coil domain of FEZ1. SCOC dimerization and the SCOC surface residue R117 are important for this interaction. PMID:24098481

  8. RF Magnetic Field Uniformity of Rectangular Planar Coils for Resonance Imaging

    DTIC Science & Technology

    2016-02-04

    determines the detected NQR signal strength from the material. In this paper , two rectangular planar coils are tuned to 28.1MHz resonant frequency of...coil with square-shaped overlapping turns along the 135mm length of the coil. This paper compares these two coils to determine which has a more...induced. The results of this paper determine the type of rectangular coil to be used in a “grid array” of coils for quadrupole resonance imaging

  9. Identification of kinesin neck region as a stable alpha-helical coiled coil and its thermodynamic characterization.

    PubMed

    Morii, H; Takenawa, T; Arisaka, F; Shimizu, T

    1997-02-18

    The kinesin heavy chain consists of an N-terminal globular domain, referred to as the motor domain, a rod-like middle region, and a C-terminal domain. In this study, the human kinesin neck region, the region adjacent to the motor domain which promotes dimerization, has been investigated. First, we predicted coiled-coil regions including the neck region by our newly devised statistical method. The sequence (335-372) was predominated by a unique heptad amphipathy. A comparison of the bacterially expressed human kinesin heavy chain fragments, K349 (1-349), a monomeric motor domain, and K379 (1-379), a dimer, by circular dichroism (CD) spectroscopy showed that K379 had more alpha-helical content. Chemically synthesized peptides, (332-349), (350-379), and (332-369), gave CD spectra with an alpha-helix-rich pattern, but the spectra varied depending on the peptide concentration. Analysis of the molar ellipticity at 222 nm indicated that those peptides were in monomer-dimer equilibria, and the dissociation isotherms established dissociation constants of 9.6 mM. 60 microM, and 62 nM for the above peptides, respectively. Sedimentation equilibrium measurements verified that the peptide (332-369) existed as a dimeric form. These results strongly suggest that the sequence from 332 to 369 of the neck region forms an alpha-helical coiled coil. The differential peptide of K349 and K379, (350-379), did not show sufficient ability to make K379 dimeric. It is likely that the region (350-379) forms a stable alpha-helical coiled coil only together with the (332-349) region. Fluorescence energy transfer studies of [Cys363]-(332-369) labeled with a fluorescence donor and an acceptor revealed that the peptide formed a parallel coiled coil. This coiled coil was thermodynamically stable against urea and thermal denaturation, and peptide exchange of the coiled coil was undetectable, or extremely slow, at neutral pH. The dissociation free energy was estimated to be 57.7 kJ mol-1 at a peptide

  10. Coiled-coil destabilizing residues in the group A Streptococcus M1 protein are required for functional interaction

    PubMed Central

    Stewart, Chelsea M.; Buffalo, Cosmo Z.; Valderrama, J. Andrés; Henningham, Anna; Cole, Jason N.; Nizet, Victor; Ghosh, Partho

    2016-01-01

    The sequences of M proteins, the major surface-associated virulence factors of the widespread bacterial pathogen group A Streptococcus, are antigenically variable but have in common a strong propensity to form coiled coils. Paradoxically, these sequences are also replete with coiled-coil destabilizing residues. These features are evident in the irregular coiled-coil structure and thermal instability of M proteins. We present an explanation for this paradox through studies of the B repeats of the medically important M1 protein. The B repeats are required for interaction of M1 with fibrinogen (Fg) and consequent proinflammatory activation. The B repeats sample multiple conformations, including intrinsically disordered, dissociated, as well as two alternate coiled-coil conformations: a Fg-nonbinding register 1 and a Fg-binding register 2. Stabilization of M1 in the Fg-nonbinding register 1 resulted in attenuation of Fg binding as expected, but counterintuitively, so did stabilization in the Fg-binding register 2. Strikingly, these register-stabilized M1 proteins gained the ability to bind Fg when they were destabilized by a chaotrope. These results indicate that M1 stability is antithetical to Fg interaction and that M1 conformational dynamics, as specified by destabilizing residues, are essential for interaction. A “capture-and-collapse” model of association accounts for these observations, in which M1 captures Fg through a dynamic conformation and then collapses into a register 2-coiled coil as a result of stabilization provided by binding energy. Our results support the general conclusion that destabilizing residues are evolutionarily conserved in M proteins to enable functional interactions necessary for pathogenesis. PMID:27512043

  11. Prospective randomized trial comparing pushable coil and detachable coil during percutaneous implantation of port-catheter system for hepatic artery infusion chemotherapy.

    PubMed

    Park, Sung Ii; Lee, Shin Jae; Lee, Myungsu; Lee, Mu Sook; Kim, Gyoung Min; Kim, Man Deuk; Won, Jong Yun; Lee, Do Yun

    2015-03-01

    The purpose of this study was to prospectively compare the efficacy and controllability of pushable coil and detachable coil during embolization of gastroduodenal artery (GDA) while performing percutaneous implantation of port-catheter system for hepatic artery infusion chemotherapy. Fifty patients (M:F = 42:8, age: 31-81 years) with advanced hepatocellular carcinoma undergoing port-catheter system implantation were randomized into pushable coil group and detachable coil group. During catheter fixation, GDA was embolized as close to the origin as possible. Success rate, number of coils used, number of coils removed due to malposition after deployment, time to occlusion, uncoiled GDA length, pushability, and complications were compared. Pushability was graded as no tension, slight tension, and difficult to advance. Embolization was successful in 49 patients. One failure resulted from repeated regurgitation of pushable coil into hepatic artery. Number of coils used and removed coils, time to occlusion, and uncoiled GDA length were 1-3 (mean 2.32), 5 coils in 3 patients, 4-20 min (mean 8.00), and 0-15.0 mm (mean 3.36) in pushable coil group, and 1-5 (mean 2.12), 2 coils in 2 patients, 2-15 min (mean 7.40), and 0-10.2 mm (mean 2.92) in detachable coil group, respectively, without significant difference. Pushability was no tension (n = 24) and slight tension (n = 1) in pushable coil group and no tension (n = 16), slight tension (n = 7), and difficult to advance (n = 2) in detachable coil group. One hepatic artery dissection occurred in the failed case during coil removal. Pushable coils and detachable coils had similar efficacy and controllability during GDA embolization, although there was a trend favoring detachable coil.

  12. Manufacturing Development of the NCSX Modular Coil Windings

    SciTech Connect

    Chrzanowsk, J. H.; Fogarty, P. J.; Heitzenroeder, P. J.; Meighan, T.; Nelson, B.; Raftopoulos, S.; Williamson, D.

    2005-09-27

    The modular coils on the National Compact Stellarator Experiment (NCSX) present a number of significant engineering challenges due to their complex shapes, requirements for high dimensional accuracy and the high current density required in the modular coils due to space constraints. In order to address these challenges, an R&D program was established to develop the conductor, insulation scheme, manufacturing techniques, and procedures. A prototype winding named Twisted Racetrack Coil (TRC) was of particular importance in dealing with these challenges. The TRC included a complex shaped winding form, conductor, insulation scheme, leads and termination, cooling system and coil clamps typical of the modular coil design. Even though the TRC is smaller in size than a modular coil, its similar complex geometry provided invaluable information in developing the final design, metrology techniques and development of manufacturing procedures. In addition a discussion of the development of the copper rope conductor including "Keystoning" concerns; the epoxy impregnation system (VPI) plus the tooling and equipment required to manufacture the modular coils will be presented.

  13. Induction magnetometer using a high-Tc superconductor coil

    NASA Astrophysics Data System (ADS)

    Sasada, Ichiro

    2010-05-01

    An induction magnetometer consisting of a search coil and an inverting operational amplifier is simple in structure and in signal transferring mechanism from the magnetic field input to the voltage output. Because this magnetometer is based on Faraday's law of induction, it has a lower cutoff frequency r/(2πL), where r is the resistance of the coil and L is its inductance. An attempt has been made to lower the cutoff frequency of the induction magnetometer by using a high-Tc superconductor coil. With a pancake coil (inner diameter ≈18 cm and outer diameter ≈23 cm, 92 turns, 3.23 mH) made of a Bismuth strontium calcium copper oxide (BSCCO) superconductor tape of 5 mm in width and 0.23 mm in thickness, the cutoff frequency achieved was 1.7 Hz which is much lower than that obtained with a bulky copper search coil which is typically in the range of 10-20 Hz. In the experiment, an inverting amplifier was made with a complementary metal-oxide semiconductor operational amplifier and was immersed in liquid nitrogen together with a BSCCO high-Tc superconducting coil. Discussion is made on the resolution of the induction magnetometer using a high-Tc superconductor search coil.

  14. Natural convection from vertical helical coiled tubes in air

    SciTech Connect

    Ali, M.E.

    1999-07-01

    Helically coiled tubes are used in many engineering applications, such as heating, refrigerating and HVAC systems. They are used also in steam generator and condenser design in power plants because of their large surface area per unit volume. In spite of their widespread use, there is very little information available in the literature on natural convection from such coils. Two experimental investigation have been reported on steady state laminar and transition natural convection from the outer surface of vertically oriented helical coiled tubes in air. Four coils at constant heat flux boundary condition have been used with coil diameter to tube diameter ratio of 16.45 and 23.94. Six more coils have been used at variable surface temperature boundary condition with coil diameter to tube diameter ratio 19.923, 15.904, and 12.798. Local average heat transfer coefficients are obtained for laminar and transition natural convection. The data are correlated with Rayleigh number using the tube diameter as a characteristic length. It has been found that the Nusselt number decreases as Rayleigh number increases for constant heat flux. Transition to turbulent natural convection regime has obtained at a critical Rayleigh number of about 5,000 and it characterizes by a waveform like relation between Nusselt number and Rayleigh number.

  15. Dynamics of entangled rod-coil block copolymers

    NASA Astrophysics Data System (ADS)

    Wang, Muzhou; Timachova, Ksenia; Alexander-Katz, Alfredo; Likhtman, Alexei E.; Olsen, Bradley D.

    2014-03-01

    Polymer science is exploring advanced materials which combine functional domains such as proteins and semiconducting polymers with traditional flexible polymers onto the same molecule. While many studies have focused on equilibrium structure-property relationships, little is known about how the conformational restrictions of rigid domains affect dynamical phenomena such as mechanical properties, processing pathways, and self-assembly kinetics. We have recently introduced a reptation theory for entangled rod-coil block copolymers as a model for this wider class of functional polymeric materials. The theory hypothesizes that the motion of rod-coils is slowed relative to rod and coil homopolymers because of a mismatch between the curvature of the rod and coil entanglement tubes. This effect leads to activated reptation and arm retraction as two relaxation mechanisms that govern the short and long rod regimes, respectively. These results were verified by tracer diffusion measurements using molecular dynamics simulation and forced Rayleigh scattering in both the rod-coil diblock and coil-rod-coil triblock configurations. The tracer diffusion results were then compared to experimental self-diffusion measurements which require a consideration of the motion of the surrounding chains.

  16. Axisymmetric Simulations of the ITER Vertical Stability Coil

    SciTech Connect

    Titus, Peter H.

    2013-07-09

    The ITER in-vessel coil system includes Vertical Stability (VS) coils and Edge Localized Mode (ELM) coils. There are two large VS ring coils, one upper and one lower. Each has four turns which are independently connected. The VS coils are needed for successful operation of ITER for most all of its operating modes. The VS coils must be highly reliable and fault tolerant. The operating environment includes normal and disruption Lorentz forces. To parametrically address all these design conditions in a tractable analysis requires a simplified model. The VS coils are predominately axisymmetric, and this suggests that an axisymmetric model can be meaningfully used to address the variations in mechanical design, loading, material properties, and time dependency. The axisymmetric finite element analysis described in this paper includes simulations of the bolted frictional connections used for the mounting details. Radiation and elastic-plastic response are modeled particularly for the extreme faulted conditions. Thermal connectivity is varied to study the effects of partial thermal connection of the actively cooled conductor to the remaining structure.

  17. Focused Magnetic Resonance Coupling Coils for Electromagnetic Therapy Applications.

    PubMed

    Yeung, Sai Ho; Pradhan, Raunaq; Feng, Xiaohua; Zheng, Yuanjin

    2015-11-01

    This paper presents the design and construction of a pair of figure-of-eight coils, coupled by magnetic resonance coupling (MRC), which could generate (150 V/m per Ampere) electric field at the focal points for electromagnetic therapy related applications. The E field generated at the targeted site would be significantly enhanced under the same amount of current flowing through the MRC figure-of-eight coils compared to normal coils, due to the superposition of E field contributed by the coils. Furthermore, the MRC figure-of-eight coil is designed and the results are verified in theory, simulation, and experiments. In the ex vivo tissue measurement, 35% current and 82% ohmic power improvements were observed. Since it can enhance the current and ohmic power, the MRC figure-of-eight coils are promising solutions for electromagnetic therapy applications. The potential applications of the coils include noninvasive radio frequency (RF) stimulation, thermoacoustic imaging, electromagnetic field therapies, and RF ablation, etc.

  18. Progress on the Focus Coil for the MICE Channel

    SciTech Connect

    Yang, S.Q.; Lau, W.; Senanayake, R.S.; Witte, H.; Green, M.A.; Drumm, P.; Ivanyushenkov, Y.

    2005-05-13

    This report describes the progress on the magnet part of the absorber focus coil module for the international Muon Ionization Cooling Experiment (MICE). MICE consists of two cells of a SFOFO cooling channel that is similar to that studied in Feasibility 2 study of a neutrino factory [1]. The MICE absorber focus coil module consists of a pair of superconducting solenoids, mounted on an aluminum mandrel. The coil package is in its own vacuum vessel located around an absorber. The absorber is within a separate vacuum vessel that is within the warm bore of the focusing magnet. The superconducting focus coils may either be run in the solenoid mode (with the two coils at the same polarity) or in the gradient mode (with the coils at opposite polarity, causing the field direction to flip within the magnet bore). The coils will be cooled using a pair of small 4 K coolers. This report discusses the progress on the MICE focusing magnets, the magnet current supply system, and the quench protection system.

  19. Development of small diameter hydraulic coiled tubing technology

    NASA Astrophysics Data System (ADS)

    Whitfill, K. E.; Olsen, R. R.

    1981-06-01

    The objective of this program was to develop design equations for coiled tubing as a helical extension or compression spring which has the capability of acting as a flexible fluid connector in aircraft hydraulic systems. The purpose of the coiled tube is to replace hose, swivels, or extension units on moving hydraulic actuator barrels which have linear or limited angle rotary motion. The use of 3A1-2.5V titanium cold worked stress relieved tubing is recommended for coiled tubing applications. Also recommendations are made for wall thickness for three titanium tube alloys for operating pressures of 1500, 3000, and 8000 psig. Design nomographs are provided to allow use in establishing coil tube design parameters such as number of coils and force at maximum deflection. Four coiled tube assemblies in tow configurations were subjected to a 100,000 cycle endurance test at 100% deflection of the coils. There were no failures. A vibration survey was made to determine natural frequencies and transmissibility with a random input vibration spectrum.

  20. The noise factor of receiver coil matching networks in MRI.

    PubMed

    Cao, Xueming; Fischer, Elmar; Gruschke, Oliver; Korvink, Jan G; Hennig, Jürgen; Maunder, Adam M; De Zanche, Nicola; Zaitsev, Maxim

    2017-04-01

    In typical MRI applications the dominant noise sources in the received signal are the sample, the coil loop and the preamplifier. We hypothesize that in some cases (e.g. for very small receiver coils) the matching network noise has to be considered explicitly. Considering the difficulties of direct experimental determinations of the noise factor of matching networks with sufficient accuracy, it is helpful to estimate the noise factor by calculation. A useful formula of the coil matching network is obtained by separating commonly used coil matching network into different stages and calculating their noise factor analytically by a combination of the noise from these stages. A useful formula of the coil matching network is obtained. ADS simulations are performed to verify the theoretical predictions. Thereafter carefully-designed proof-of-concept phantom experiments are carried out to qualitatively confirm the predicted SNR behavior. The matching network noise behavior is further theoretically investigated for a variety of scenarios. It is found that in practice the coil matching network noise can be improved by adjusting the coil open port resonant frequency.

  1. Single-coil magnetic induction tomographic three-dimensional imaging

    PubMed Central

    Feldkamp, Joseph R.

    2015-01-01

    Abstract. Previously, magnetic induction tomography (MIT) has been considered for noncontact imaging of human tissue electrical properties. Commonly, multiple coils are used, with any one serving as the source while others detect eddy currents generated in the specimen. Here, imaging of low conductivity objects is shown feasible with a single coil acting simultaneously as source and detector, provided that the coil is repeatedly relocated while collecting coil loss data. To enable such “scanning,” an analytical coil loss formula is derived in the quasistatic limit for a single coil consisting of several concentric circular wire loops, all within a common plane. Conductivity may vary arbitrarily in space, whereas permittivity and permeability are treated as uniform. The analytical form is used to build an algorithm for imaging electrical conductivity in human tissues. A practical device operating at 12.5 MHz is described and used in a clinical trial that “scans” the region between the scapulae while collecting coil loss data. Inversion of data leads to electrical conductivity distribution images for the thoracic spinal column which are the first of their kind to correctly distinguish such basic features as size and depth of spinal canal, as well as size, depth, and spacing of transverse spinal processes. PMID:26158078

  2. Coil Tolerance Impact on Plasma Surface Quality for NCSX

    SciTech Connect

    Art Brooks; Wayne Reiersen

    2003-10-20

    The successful operation of the National Compact Stellarator Experiment (NCSX) machine will require producing plasma configurations with good flux surfaces, with a minimum volume of the plasma lost to magnetic islands or stochastic regions. The project goal is to achieve good flux surfaces over 90% of the plasma volume. NCSX is a three period device designed to be operated with iota ranging from {approx}0.4 on axis to {approx}0.7 at the edge. The field errors of most concern are those that are resonant with 3/5 and 3/6 modes (for symmetry preserving field errors) and the 1/2 and 2/3 modes (for symmetry breaking field errors). In addition to losses inherent in the physics configuration itself, there will be losses from field errors arising from coil construction and assembly errors. Some of these losses can be recovered through the use of trim coils or correction coils. The impact of coil tolerances on plasma surface quality is evaluated herein for the NCSX design. The methods used in this evaluation are discussed. The ability of the NCSX trim coils to correct for field errors is also examined. The results are used to set coils tolerances for the various coil systems.

  3. Discrete-coil investigations of modular stellarator configurations

    SciTech Connect

    Lilliequist, C.G.

    1985-10-01

    The existence of a vacuum magnetic well is generally accepted as a prerequisite to start-up. The special set of modular-stellarator configurations selected for the present computational investigation was derived from coefficients and equations that produced finite-beta wells in a continuous-current-sheet representation. The corresponding coils did not produce magnetic wells in a vacuum when their field configuration was investigated with a discrete-coil code. Vacuum magnetic wells have been identified through the use of this discrete-coil code in previous Heliac and stellarator studies. Therefore, these finite-beta magnetic wells could be the consequence of the continuous-current-sheet model: a conjecture that is supported by the linear scaling of the magnetic hills found in the present work as a function of the separation between the coils used. In addition to magnetic field profiles, comparisons are shown here of ripple, rotational transform, and flux-surface shapes for the discrete-coil, modular stellarators under study. Initially, each of the significant parameters affecting the shape of the control surface upon which the coils lie and the deformation of the individual coils was varied separately in search of a vacuum magnetic well in the parameter neighborhood of the successful finite-beta configuration.

  4. Therapy-resistant nephrolithiasis following renal artery coil embolization

    PubMed Central

    2013-01-01

    Background Transcatheter renal artery embolization is an effective and minimally invasive treatment option for acute renal bleeding. Early post-interventional complications include groin hematoma, incomplete embolization, coil misplacement and coil migration. Late complications are rare and mostly related to coil migration. Case presentation A 22-year-old woman with a history of recurrent stone disease and a lumbal meningomyelocele underwent bilateral open pyelolithotomy for bilateral staghorn calculi. Post-operatively, acute hemorrhage of the left kidney occurred and selective arterial coil embolization of a lower pole interlobular renal artery was performed twice. Four years after this intervention the patient presented with a new 15.4 mm stone in the lower calyx of the left kidney. After two extracorporeal shock wave lithotripsy treatments disintegration of the stone was not detectable. Therefore, flexible ureterorenoscopy was performed and revealed that the stone was adherent to a partially intraluminal metal coil in the lower renal calyx. The intracalyceal part of the coil and the adherent stone were successfully removed using the holmium laser. Conclusion Therapy-resistant nephrolithiasis was caused by a migrated metal coil, which was placed four years earlier for the treatment of acute post-operative renal bleeding. Renal coils in close vicinity to the renal pelvis can migrate into the collecting system and trigger renal stone formation. Extracorporeal shock wave lithotripsy seems to be inefficient for these composite stones. Identification of these rare stones is possible during retrograde intrarenal surgery. It also enables immediate stone disintegration and removal of the stone fragments and the intraluminal coil material. PMID:23758632

  5. MEMS switch integrated radio frequency coils and arrays for magnetic resonance imaging

    NASA Astrophysics Data System (ADS)

    Bulumulla, S. B.; Park, K. J.; Fiveland, E.; Iannotti, J.; Robb, F.

    2017-02-01

    Surface coils are widely used in magnetic resonance imaging and spectroscopy. While smaller diameter coils produce higher signal to noise ratio (SNR) closer to the coil, imaging larger fields of view or greater distance into the sample requires a larger overall size array or, in the case of a channel count limited system, larger diameter coils. In this work, we consider reconfiguring the geometry of coils and coil arrays such that the same coil or coil array may be used in multiple field of view imaging. A custom designed microelectromechanical systems switch, compatible with magnetic resonance imaging, is used to switch in/out conductive sections and components to reconfigure coils. The switch does not degrade the SNR and can be opened/closed in 10 μ s, leading to rapid reconfiguration. Results from a single coil, configurable between small/large configurations, and a two-coil phased array, configurable between spine/torso modes, are presented.

  6. Microhole Coiled Tubing Bottom Hole Assemblies

    SciTech Connect

    Don Macune

    2008-06-30

    The original objective of the project, to deliver an integrated 3 1/8-inch diameter Measurement While Drilling (MWD) and Logging While Drilling (LWD) system for drilling small boreholes using coiled tubing drilling, has been achieved. Two prototype systems have been assembled and tested in the lab. One of the systems has been successfully tested downhole in a conventional rotary drilling environment. Development of the 3 1/8-inch system has also lead to development and commercialization of a slightly larger 3.5-inch diameter system. We are presently filling customer orders for the 3.5-inch system while continuing with commercialization of the 3 1/8-inch system. The equipment developed by this project will be offered for sale to multiple service providers around the world, enabling the more rapid expansion of both coiled tubing drilling and conventional small diameter drilling. The project was based on the reuse of existing technology whenever possible in order to minimize development costs, time, and risks. The project was begun initially by Ultima Labs, at the time a small company ({approx}12 employees) which had successfully developed a number of products for larger oil well service companies. In September, 2006, approximately 20 months after inception of the project, Ultima Labs was acquired by Sondex plc, a worldwide manufacturer of downhole instrumentation for cased hole and drilling applications. The acquisition provided access to proven technology for mud pulse telemetry, downhole directional and natural gamma ray measurements, and surface data acquisition and processing, as well as a global sales and support network. The acquisition accelerated commercialization through existing Sondex customers. Customer demand resulted in changes to the product specification to support hotter (150 C) and deeper drilling (20,000 psi pressure) than originally proposed. The Sondex acquisition resulted in some project delays as the resistivity collar was interfaced to a

  7. Resistive toroidal-field coils for tokamak reactors

    SciTech Connect

    Kalnavarns, J.; Jassby, D.L.

    1980-11-01

    This paper analyzes the optimization of the geometry of resistive TF coils of rectangular bore for tokamak fusion test reactors and practical neutron generators. In examining the trade-offs between geometric parameters and magnetic field for reactors giving a specified neutron wall loading, either the resistive power loss or the lifetime coil cost can be minimized. Aspects of cooling, magnetic stress, and construction are addressed for several reference designs. Bending moment distributions in closed form have been derived for rectangular coils on the basis of the theory of rigid frames. Candidate methods of fabrication and of implementing demountable joints are summarized.

  8. Parametric design of tri-axial nested Helmholtz coils

    SciTech Connect

    Abbott, Jake J.

    2015-05-15

    This paper provides an optimal parametric design for tri-axial nested Helmholtz coils, which are used to generate a uniform magnetic field with controllable magnitude and direction. Circular and square coils, both with square cross section, are considered. Practical considerations such as wire selection, wire-wrapping efficiency, wire bending radius, choice of power supply, and inductance and time response are included. Using the equations provided, a designer can quickly create an optimal set of custom coils to generate a specified field magnitude in the uniform-field region while maintaining specified accessibility to the central workspace. An example case study is included.

  9. Fabrication of a helical coil shape memory alloy actuator

    NASA Astrophysics Data System (ADS)

    Odonnell, R. E.

    1992-02-01

    A fabrication process was developed to form, heat treat, and join NiTi shape memory alloy helical coils for use as mechanical actuators. Tooling and procedures were developed to wind both extension and compression-type coils on a manual lathe. Heat treating fixtures and techniques were used to set the 'memory' of the NiTi alloy to the desired configuration. A swaging process was devised to fasten shape memory alloy extension coils to end fittings for use in actuator testing and for potential attachment to mechanical devices. The strength of this mechanical joint was evaluated.

  10. Fabrication of a helical coil shape memory alloy actuator

    SciTech Connect

    O'Donnell, R.E.

    1992-02-01

    A fabrication process was developed to form, heat treat, and join NiTi shape memory alloy helical coils for use as mechanical actuators. Tooling and procedures were developed to wind both extension and compression-type coils on a manual lathe. Heat treating fixtures and techniques were used to set the memory'' of the NiTi alloy to the desired configuration. A swaging process was devised to fasten shape memory alloy extension coils to end fittings for use in actuator testing and for potential attachment to mechanical devices. The strength of this mechanical joint was evaluated.

  11. Fabrication of a helical coil shape memory alloy actuator

    SciTech Connect

    O`Donnell, R.E.

    1992-02-01

    A fabrication process was developed to form, heat treat, and join NiTi shape memory alloy helical coils for use as mechanical actuators. Tooling and procedures were developed to wind both extension and compression-type coils on a manual lathe. Heat treating fixtures and techniques were used to set the ``memory`` of the NiTi alloy to the desired configuration. A swaging process was devised to fasten shape memory alloy extension coils to end fittings for use in actuator testing and for potential attachment to mechanical devices. The strength of this mechanical joint was evaluated.

  12. Parametric design of tri-axial nested Helmholtz coils.

    PubMed

    Abbott, Jake J

    2015-05-01

    This paper provides an optimal parametric design for tri-axial nested Helmholtz coils, which are used to generate a uniform magnetic field with controllable magnitude and direction. Circular and square coils, both with square cross section, are considered. Practical considerations such as wire selection, wire-wrapping efficiency, wire bending radius, choice of power supply, and inductance and time response are included. Using the equations provided, a designer can quickly create an optimal set of custom coils to generate a specified field magnitude in the uniform-field region while maintaining specified accessibility to the central workspace. An example case study is included.

  13. Hot-wire coil probe for high-speed flows

    NASA Technical Reports Server (NTRS)

    Weinstein, L. M.

    1973-01-01

    Small-diameter-wire coil probes developed for use in a hypersonic helium tunnel are discussed. The springlike properties of the coil minimize strain-gauge effects, and allow to use a higher length-to-diameter ratio for a given flow. In addition, the coil is more rugged for sudden flow changes, and since it can be mounted straight across the support tips, there is less support interference in cross flows. In addition to measuring fluctuating quantities in a boundary layer, the probes were used with a constant temperature anemometer for measuring mean mass flow profiles, and with a constant current anemometer for measuring mean total temperature profiles.

  14. Magnetic mirror structure for testing shell-type quadrupole coils

    SciTech Connect

    Andreev, N.; Barzi, E.; Bossert, R.; Chlachidze, G.; Kashikhin, V.S.; Kashikhin, V.V.; Lamm, M.J.; Nobrega, F.; Novitski, I.; Tartaglia, N.; Turrioni, D.; /Fermilab

    2009-10-01

    This paper presents magnetic and mechanical designs and analyses of the quadrupole mirror structure to test single shell-type quadrupole coils. Several quadrupole coils made of different Nb{sub 3}Sn strands, cable insulation and pole materials were tested using this structure at 4.5 and 1.9 K. The coils were instrumented with voltage taps, spot heaters, temperature sensors and strain gauges to study their mechanical and thermal properties and quench performance. The results of the quadrupole mirror model assembly and test are reported and discussed.

  15. Eddy-current transducer based on flat spiral coils

    SciTech Connect

    Franyuk, V.A.; Ivan'kovich, L.F.

    1988-12-01

    The article deals with the experimental investigation of flat-coil eddy current transducers with spiral windings. It is shown that it is possible to use them for detecting discontinuities on electrically conducting products with different configuration of the surface. The instrument is described. The use of crossed flat coils makes it possible effectively to detect flaws in electrically conducting products of any shape. A transducer containing crossed flat coils helps, in addition to detecting flaws, in evaluating anisotropy (magnetic and mechanical) from which conclusions as to the physicomechanical properties of the product can be drawn.

  16. Modeling the cooldown of force-cooled coils

    SciTech Connect

    Green, M.A.; Mitina, S.; Krafft, G.

    1981-03-01

    This paper describes a finite difference computer program which simulates the cooldown of force-cooled superconducting coils. The basic theory is discussed and the method of calculation used in the program is described. Some of the problems associated with computer modeling of a cooldown are discussed. The program capability is demonstrated on a three-dimensional model which represents the 1000 kg cryogenic model of the Euratom LCT coil. From computer simulation using the program described here, a method for cooling down large forced cooled superconducting coils can be developed.

  17. The Role of Filtration in Maintaining Clean Heat Exchanger Coils

    SciTech Connect

    Li Yang; James E. Braun; Eckhard A. Groll

    2004-06-30

    The main purpose of the study was to investigate the role of filtration in maintaining clean heat exchanger coils and overall performance. Combinations of 6 different levels of filtration (MERV 14, 11, 8, 6, 4, and no filter) and 4 different coils (an eight-row lanced-fin coil, HX8L), (an eight-row wavy-fin coil, HX8W), (a four-row lanced-fin coil, HX4L) and (a two-row lanced-fin coil, HX2L) were tested at 4 different air velocities (1.52, 2.03, 2.54,3.05 m/s (300, 400, 500, 600 ft/min)). The fouled conditions were obtained after injection of 600 grams of ASHRAE standard dust upstream of the filter/coil combination. This magnitude of dust is representative of a year of normal operation for an air conditioning system. The air-side pressure drops of the coils and filters and air-side heat transfer coefficients of the coils were determined from the measurements under the clean and fouled conditions. Depending upon the filter and coil test, the coil pressure drops increased in the range of 6%-30% for an air velocity at 2.54 m/s (500 ft/min). The impact was significantly greater for tests performed without a filter. The largest relative effect of fouling on pressure drop occurs for coils with fewer rows and having lanced fins. Coils with a greater number of rows can hold more dust so that a fixed amount of dust has a relatively smaller impact. The impact of fouling on air-side heat transfer coefficients was found to be relatively small. In some cases, heat transfer was actually enhanced due to additional turbulence caused by the presence of dust. The experimental results for pressure drops and heat transfer coefficients were correlated and the correlations were implemented within computer models of prototypical rooftop air conditioners and used to evaluate the impact of fouling on cooling capacity and EER. The equipment cooling capacity is reduced with fouling primarily because of a decrease in air flow due to the increase pressure drop rather than due to changes in h

  18. Balance between Coiled-Coil Stability and Dynamics Regulates Activity of BvgS Sensor Kinase in Bordetella

    PubMed Central

    Lesne, E.; Krammer, E.-M.; Dupre, E.; Locht, C.; Lensink, M. F.

    2016-01-01

    ABSTRACT The two-component system BvgAS controls the expression of the virulence regulon of Bordetella pertussis. BvgS is a prototype of bacterial sensor kinases with extracytoplasmic Venus flytrap perception domains. Following its transmembrane segment, BvgS harbors a cytoplasmic Per-Arnt-Sim (PAS) domain and then a predicted 2-helix coiled coil that precede the dimerization-histidine-phosphotransfer domain of the kinase. BvgS homologs have a similar domain organization, or they harbor only a predicted coiled coil between the transmembrane and the dimerization-histidine-phosphotransfer domains. Here, we show that the 2-helix coiled coil of BvgS regulates the enzymatic activity in a mechanical manner. Its marginally stable hydrophobic interface enables a switch between a state of great rotational dynamics in the kinase mode and a more rigid conformation in the phosphatase mode in response to signal perception by the periplasmic domains. We further show that the activity of BvgS is controlled in the same manner if its PAS domain is replaced with the natural α-helical sequences of PAS-less homologs. Clamshell motions of the Venus flytrap domains trigger the shift of the coiled coil’s dynamics. Thus, we have uncovered a general mechanism of regulation for the BvgS family of Venus flytrap-containing two-component sensor kinases. PMID:26933056

  19. The significant impact of framing coils on long-term outcomes in endovascular coiling for intracranial aneurysms: how to select an appropriate framing coil.

    PubMed

    Ishida, Wataru; Sato, Masayuki; Amano, Tatsuo; Matsumaru, Yuji

    2016-09-01

    OBJECTIVE The importance of a framing coil (FC)-the first coil inserted into an aneurysm during endovascular coiling, also called a lead coil or a first coil-is recognized, but its impact on long-term outcomes, including recanalization and retreatment, is not well established. The purposes of this study were to test the hypothesis that the FC is a significant factor for aneurysmal recurrence and to provide some insights on appropriate FC selection. METHODS The authors retrospectively reviewed endovascular coiling for 280 unruptured intracranial aneurysms and gathered data on age, sex, aneurysm location, aneurysm morphology, maximal size, neck width, adjunctive techniques, recanalization, retreatment, follow-up periods, total volume packing density (VPD), volume packing density of the FC, and framing coil percentage (FCP; the percentage of FC volume in total coil volume) to clarify the associated factors for aneurysmal recurrence. RESULTS Of 236 aneurysms included in this study, 33 (14.0%) had recanalization, and 18 (7.6%) needed retreatment during a mean follow-up period of 37.7 ± 16.1 months. In multivariate analysis, aneurysm size (odds ratio [OR] = 1.29, p < 0.001), FCP < 32% (OR 3.54, p = 0.009), and VPD < 25% (OR 2.96, p = 0.015) were significantly associated with recanalization, while aneurysm size (OR 1.25, p < 0.001) and FCP < 32% (OR 6.91, p = 0.017) were significant predictors of retreatment. VPD as a continuous value or VPD with any cutoff value could not predict retreatment with statistical significance in multivariate analysis. CONCLUSIONS FCP, which is equal to the FC volume as a percentage of the total coil volume and is unaffected by the morphology of the aneurysm or the measurement error in aneurysm length, width, or height, is a novel predictor of recanalization and retreatment and is more significantly predictive of retreatment than VPD. To select FCs large enough to meet the condition of FCP ≥ 32% is a potential relevant factor for better

  20. Inspecting coiled tubing for well operations

    SciTech Connect

    Gard, M.F.; Pasternack, E.S.; Smith, L.J.

    1992-02-18

    This patent describes improvement in a coiled tubing system for insertion of a substantially continuous bendable length of metal tubing into and withdrawal from a wellbore, the system including a tubing injection unit disposed for injecting the length of tubing into the well bore and storage means for dispensing the length of tubing and receiving the length of tubing from the injection unit. The improvement includes: tubing inspection apparatus for substantially continuously inspecting the wall section of the tubing to detect cracks and structural defects which may lead to tubing failure, the apparatus comprising: a source of electromagnetic radiation mounted in proximity to the tubing between the injection unit and a wellhead into which the tubing is injected; a radiation detector unit for receiving signals from the source which have been projected through the wall of the tubing; means for receiving signals form the detector unit for monitoring the structural integrity o the wall of the tubing during one of injecting and withdrawing the tubing with respect to the wellhead; and housing means supported for rotation about a longitudinal axis of the tubing.

  1. Advances in coiled-tubing operating systems

    SciTech Connect

    Sas-Jaworsky, A. II

    1997-06-01

    The expansion of coiled tubing (CT) applications into spooled flowlines, spooled completions, and CT drilling continues to grow at an accelerated rate. For many users within the oil and gas industry, the CT industry appears to be poised on the threshold of the next logical step in its evolution, the creation of a fully integrated operating system. However, for CT to evolve into such an operating system, the associated services must be robust and sufficiently reliable to support the needs of exploration, development drilling, completion, production management, and wellbore-retirement operations both technically and economically. The most critical hurdle to overcome in creating a CT-based operating system is a fundamental understanding of the operating scope and physical limitations of CT technology. The complete list of mechanisms required to advance CT into an operating system is large and complex. However, a few key issues (such as formal education, training, standardization, and increased levels of experience) can accelerate the transition. These factors are discussed.

  2. Coil-Type Asymmetric Supercapacitor Electrical Cables.

    PubMed

    Yu, Zenan; Moore, Julian; Calderon, Jean; Zhai, Lei; Thomas, Jayan

    2015-10-21

    Cable-shaped supercapacitors (SCs) have recently aroused significant attention due to their attractive properties such as small size, lightweight, and bendability. Current cable-shaped SCs have symmetric device configuration. However, if an asymmetric design is used in cable-shaped supercapacitors, they would become more attractive due to broader cell operation voltages, which results in higher energy densities. Here, a novel coil-type asymmetric supercapacitor electrical cable (CASEC) is reported with enhanced cell operation voltage and extraordinary mechanical-electrochemical stability. The CASECs show excellent charge-discharge profiles, extraordinary rate capability (95.4%), high energy density (0.85 mWh cm(-3)), remarkable flexibility and bendability, and superior bending cycle stability (≈93.0% after 4000 cycles at different bending states). In addition, the CASECs not only exhibit the capability to store energy but also to transmit electricity simultaneously and independently. The integrated electrical conduction and storage capability of CASECS offer many potential applications in solar energy storage and electronic gadgets.

  3. Formation of current coils in geodynamo simulations.

    PubMed

    Kageyama, Akira; Miyagoshi, Takehiro; Sato, Tetsuya

    2008-08-28

    Computer simulations have been playing an important role in the development of our understanding of the geodynamo, but direct numerical simulation of the geodynamo with a realistic parameter regime is still beyond the power of today's supercomputers. Difficulties in simulating the geodynamo arise from the extreme conditions of the core, which are characterized by very large or very small values of the non-dimensional parameters of the system. Among them, the Ekman number, E, has been adopted as a barometer of the distance of simulations from real core conditions, in which E is of the order of 10(-15). Following the initial computer simulations of the geodynamo, the Ekman number achieved has been steadily decreasing, with recent geodynamo simulations performed with E of the order of 10(-6). Here we present a geodynamo simulation with an Ekman number of the order of 10(-7)-the highest-resolution simulation yet achieved, making use of 4,096 processors of the Earth Simulator. We have found that both the convection flow and magnetic field structures are qualitatively different from those found in larger-Ekman-number dynamos. The convection takes the form of sheet plumes or radial sheet jets, rather than the columnar cell structures that are usually found. We have found that this sheet plume convection is an effective dynamo and the generated current is organized as a set of coils in the shape of helical springs or at times as a torus.

  4. The Search-Coil Magnetometer for MMS

    NASA Astrophysics Data System (ADS)

    Le Contel, O.; Leroy, P.; Roux, A.; Coillot, C.; Alison, D.; Bouabdellah, A.; Mirioni, L.; Meslier, L.; Galic, A.; Vassal, M. C.; Torbert, R. B.; Needell, J.; Rau, D.; Dors, I.; Ergun, R. E.; Westfall, J.; Summers, D.; Wallace, J.; Magnes, W.; Valavanoglou, A.; Olsson, G.; Chutter, M.; Macri, J.; Myers, S.; Turco, S.; Nolin, J.; Bodet, D.; Rowe, K.; Tanguy, M.; de la Porte, B.

    2016-03-01

    The tri-axial search-coil magnetometer (SCM) belongs to the FIELDS instrumentation suite on the Magnetospheric Multiscale (MMS) mission (Torbert et al. in Space Sci. Rev. (2014), this issue). It provides the three magnetic components of the waves from 1 Hz to 6 kHz in particular in the key regions of the Earth's magnetosphere namely the subsolar region and the magnetotail. Magnetospheric plasmas being collisionless, such a measurement is crucial as the electromagnetic waves are thought to provide a way to ensure the conversion from magnetic to thermal and kinetic energies allowing local or global reconfigurations of the Earth's magnetic field. The analog waveforms provided by the SCM are digitized and processed inside the digital signal processor (DSP), within the Central Electronics Box (CEB), together with the electric field data provided by the spin-plane double probe (SDP) and the axial double probe (ADP). On-board calibration signal provided by DSP allows the verification of the SCM transfer function once per orbit. Magnetic waveforms and on-board spectra computed by DSP are available at different time resolution depending on the selected mode. The SCM design is described in details as well as the different steps of the ground and in-flight calibrations.

  5. Use of coiled tubing fans out among well sites of the world

    SciTech Connect

    Not Available

    1994-10-03

    Better operator understanding of coiled tubing improvements is generating a burst of applications at well sites around the world. Prompted by economics, producers are using coiled tubing in a wide range of well maintenance and remediation procedures to lower costs and increase recovery. Some more common workovers using coiled tubing--production tubing cleanouts and matrix acidizing, for example--not only are lowering costs but also are achieving better results. Other less known uses--logging, recompletions, and reentry drilling--until recently were thought unreliable or impossible. But better management of tubing fatigue, better materials, and larger tubing sizes are combining to boost producers' confidence in the relatively old technology. The paper describes coiled tubing opportunities, modeling fatigue, and then discusses some of its current applications.

  6. Control of critical coupling in a coiled coaxial cable resonator

    NASA Astrophysics Data System (ADS)

    Huang, Jie; Wei, Tao; Wang, Tao; Fan, Jun; Xiao, Hai

    2014-05-01

    This paper reports a coiled coaxial cable resonator fabricated by cutting a slot in a spring-like coiled coaxial cable to produce a periodic perturbation. Electromagnetic coupling between two neighboring slots was observed. By manipulating the number of slots, critical coupling of the coiled coaxial cable resonator can be well controlled. An ultrahigh signal-to-noise ratio (over 50 dB) at the resonant frequency band was experimentally achieved from a coiled coaxial cable resonator with 38 turns. A theoretic model is developed to understand the device physics. The proposed device can be potentially used as a high quality and flexibly designed band-stop filter or a sensor in structural health monitoring.

  7. Application of NASTRAN to TFTR toroidal field coil structures

    NASA Technical Reports Server (NTRS)

    Chen, S. J.; Lee, E.

    1978-01-01

    The primary applied loads on the TF coils were electromagnetic and thermal. The complex structure and the tremendous applied loads necessitated computer type of solutions for the design problems. In the early stage of the TF coil design, many simplified finite element models were developed for the purpose of investigating the effects of material properties, supporting schemes, and coil case material on the stress levels in the case and in the copper coil. In the more sophisticated models that followed the parametric and scoping studies, the isoparametric elements, such as QUAD4, HEX8, and HEXA, were used. The analysis results from using these finite element models and the NASTRAN system were considered accurate enough to provide timely design information.

  8. Critical Current Measurements in Commercial Tapes, Coils, and Magnets.

    NASA Astrophysics Data System (ADS)

    Gubser, D. U.; Soulen, R. J., Jr.; Fuller-Mora, W. W.; Francavilla, T. L.

    1996-03-01

    We have measured a number of tapes, coils, and magnets produced by commercial vendors and determined their properties as functions of magnetic field and temperature. The tapes were measured at the National High Magnetic Field Laboratory in magnetic fields to 20 tesla and at temperatures of 4.2 K, 27 K, 65 K, and 77 K. For the tapes we report critical currents and current-voltage characteristics. Six inch diameter coils were measured at NRL in zero magnetic field. Critical currents, current-voltage characteristics, and reliability studies are reported for the coils. Larger 10 inch diameter coils, which are to be used in a 200 hp superconducting motor, were also measured and results will be presented. The talk will also review the status of the most recent tests of the superconducting motor.

  9. Control of critical coupling in a coiled coaxial cable resonator.

    PubMed

    Huang, Jie; Wei, Tao; Wang, Tao; Fan, Jun; Xiao, Hai

    2014-05-01

    This paper reports a coiled coaxial cable resonator fabricated by cutting a slot in a spring-like coiled coaxial cable to produce a periodic perturbation. Electromagnetic coupling between two neighboring slots was observed. By manipulating the number of slots, critical coupling of the coiled coaxial cable resonator can be well controlled. An ultrahigh signal-to-noise ratio (over 50 dB) at the resonant frequency band was experimentally achieved from a coiled coaxial cable resonator with 38 turns. A theoretic model is developed to understand the device physics. The proposed device can be potentially used as a high quality and flexibly designed band-stop filter or a sensor in structural health monitoring.

  10. Specialized equipment enabled completions with large coiled tubing

    SciTech Connect

    Taylor, R.W.; Conrad, B.

    1996-02-19

    Specialized equipment enabled successful well completions in Oman with large 3{1/2}-inch coiled tubing. Conventional drilling or completion rigs were not needed. Although the use of 3{1/2}-inch coiled tubing to complete wells is relatively new, it is gaining widespread industry application. One Middle East operating company felt that if downhole completion equipment could be successfully run using coiled tubing, greater cost efficiency, both in initial deployment and in maintenance, could be derived. The paper lists some of the technical considerations for these assumptions. The long-term advantages regarding production and well maintenance cannot yet be determined, but experience in Oman has confirmed the belief that large coiled tubing completions can be technically achieved.

  11. Experiment of low resistance joints for the ITER correction coil.

    PubMed

    Liu, Huajun; Wu, Yu; Wu, Weiyue; Liu, Bo; Shi, Yi; Guo, Shuai

    2013-01-01

    A test method was designed and performed to measure joint resistance of the ITER correction coil (CC) in liquid helium (LHe) temperature. A 10 kA superconducting transformer was manufactured to provide the joints current. The transformer consisted of two concentric layer-wound superconducting solenoids. NbTi superconducting wire was wound in the primary coil and the ITER CC conductor was wound in the secondary coil. The primary and the secondary coils were both immersed in liquid helium of a 300 mm useful bore diameter cryostat. Two ITER CC joints were assembled in the secondary loop and tested. The current of the secondary loop was ramped to 9 kA in several steps. The two joint resistances were measured to be 1.2 nΩ and 1.65 nΩ, respectively.

  12. Convective heat transfer enhancement inside tubes using inserted helical coils

    NASA Astrophysics Data System (ADS)

    Ali, R. K.; Sharafeldeen, M. A.; Berbish, N. S.; Moawed, M. A.

    2016-01-01

    Convective heat transfer was experimentally investigated in tubes with helical coils inserts in turbulent flow regime within Reynolds number range of 14400 ≤ Re ≤ 42900. The present work aims to extend the experimental data available on wire coil inserts to cover wire diameter ratio from 0.044 to 0.133 and coil pitch ratio from 1 to 5. Uniform heat flux was applied to the external surface of the tube and air was selected as fluid. The effects of Reynolds number and wire diameter and coil pitch ratios on the Nusselt number and friction factor were studied. The enhancement efficiency and performance criteria ranges are of (46.9-82.6%) and (100.1-128%) within the investigated range of the different parameters, respectively. Correlations are obtained for the average Nusselt number and friction factor utilizing the present measurements within the investigated range of geometrical parameters and Re.

  13. Rapid mixing of viscous liquids by electrical coiling

    NASA Astrophysics Data System (ADS)

    Kong, Tiantian; Li, Jingmei; Liu, Zhou; Zhou, Zhuolong; Ng, Peter Hon Yu; Wang, Liqiu; Shum, Ho Cheung

    2016-02-01

    The control for the processing of precursor liquids determines whether the properties and functions of the final material product can be engineered. An inherent challenge of processing viscous liquids arises from their large resistance to deform. Here, we report on the discovery of an electric approach that can significantly contribute to address this challenge. The applied electric force can induce a straight viscous jet to coil, and the resulting coiling characteristics are governed by the electric stress. We demonstrate the promising use of electrical coiling in the rapid and efficient mixing of viscous liquids. Remarkably, the degree of mixing can be precisely adjusted by tuning the applied electric stress. Our approach of controlling the coiling electrically has important implications on applications such as dispensing and printing of resins, printing patterned surfaces and scaffolds, processing of food and generating non-woven fabrics.

  14. Application of superconducting coils to the NASA prototype magnetic balance

    NASA Technical Reports Server (NTRS)

    Haldeman, C. W.; Kraemer, R. A.; Phey, S. W.; Alishahi, M. M.; Covert, E. E.

    1981-01-01

    Application of superconducting coils to a general purpose magnetic balance was studied. The most suitable currently available superconducting cable for coils appears to be a bundle of many fine wires which are transposed and are mechanically confined. Sample coils were tested at central fields up to .5 Tesla, slewing rates up to 53 Tesla/ sec and frequencies up to 30 Hz. The ac losses were measured from helium boil-off and were approximately 20% higher than those calculated. Losses were dominated by hysteresis and a model for loss calculation which appears suitable for design purposes is presented along with computer listings. Combinations of two coils were also tested and interaction losses are reported. Two feasible geometries are also presented for prototype magnetic balance using superconductors.

  15. The toroidal field coil design for ARIES-ST

    SciTech Connect

    Reiersen, W.; Dahlgren, F.; Fan, H.M.; Neumeyer, C.; Zatz, I.

    2000-01-21

    An evolutionary process was used to develop the toroidal field (TF) coil design for the ARIES-ST (Spherical Tokamak). Design considerations included fabricability, assembly, maintenance, energy efficiency, and structural robustness. The design addresses a number of the concerns (complexity) and criticisms (high cost, high recirculating power) of fusion. It does this by: (1) Applying advanced, but available laser forming and spray casting techniques for manufacturing the TF coil system; (2) Adopting a simple single toroidal field coil system to make assembly and maintenance much easier, the single turn design avoids the necessity of using the insulation as a structural component of the TF coils, and hence is much more robust than multi-turn designs; and (3) Using a high conductivity copper alloy and modest current densities to keep the recirculating power modest.

  16. Bubble-domain circuit wafer evaluation coil set

    NASA Technical Reports Server (NTRS)

    Chen, T. T.; Williams, J. L.

    1975-01-01

    Coil structures have been designed to permit nondestructive testing of bubble wafers. Wafers can be electrically or optically inspected and operated from quasi-static frequency to maximum device operating frequency.

  17. Investigation of cryosorption vacuum system and operation process for COIL

    NASA Astrophysics Data System (ADS)

    Xia, Liang-zhi; Wang, Jin-qu; Sang, Feng-ting; Zhao, Su-qin; Jin, Yu-qi; Fang, Ben-jie

    2007-05-01

    Cryosorption vacuum system for COIL is researched and developed. Adsorption chiller has been proposed and developed by improving the heat exchanger chiller. Compared with the heat exchanger chiller, the volume and LN II consumption of the new chiller were favourably reduced. In the present work, the new adsorption operation process, cryogenic pressure swing adsorption is adopted. Compared with thermal swing adsorption, regeneration time is shortened and LN II consumption is saved at least 80% in the new operation process. The cryosorption vacuum system was integrated to COIL and tested successfully. The weight of sorbent in adsorption bed is 22Kg, the total gas flowrate is about 0.5mol/s, the COIL's power maintains over 2kW, the total COIL's working time accounts to 100 seconds. It is concluded that the cryosorption vacuum system has the same pressure recovery capability as the large vacuum tank.

  18. 1. TEMPERING COILS IN WIND TUNNEL. Hot Springs National ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    1. TEMPERING COILS IN WIND TUNNEL. - Hot Springs National Park, Bathhouse Row, Buckstaff Bathhouse: Mechanical & Piping Systems, State Highway 7, 1 Mile North of U.S. Highway 70, Hot Springs, Garland County, AR

  19. 1. PLENUM INTERIOR, SHOWING HEATING COILS AND BYPASS Hot ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    1. PLENUM INTERIOR, SHOWING HEATING COILS AND BY-PASS - Hot Springs National Park, Bathhouse Row, Fordyce Bathhouse: Mechanical & Piping Systems, State Highway 7, 1 mile north of U.S. Highway 70, Hot Springs, Garland County, AR

  20. Rapid mixing of viscous liquids by electrical coiling

    PubMed Central

    Kong, Tiantian; Li, Jingmei; Liu, Zhou; Zhou, Zhuolong; Ng, Peter Hon Yu; Wang, Liqiu; Shum, Ho Cheung

    2016-01-01

    The control for the processing of precursor liquids determines whether the properties and functions of the final material product can be engineered. An inherent challenge of processing viscous liquids arises from their large resistance to deform. Here, we report on the discovery of an electric approach that can significantly contribute to address this challenge. The applied electric force can induce a straight viscous jet to coil, and the resulting coiling characteristics are governed by the electric stress. We demonstrate the promising use of electrical coiling in the rapid and efficient mixing of viscous liquids. Remarkably, the degree of mixing can be precisely adjusted by tuning the applied electric stress. Our approach of controlling the coiling electrically has important implications on applications such as dispensing and printing of resins, printing patterned surfaces and scaffolds, processing of food and generating non-woven fabrics. PMID:26860660

  1. Photonic crystal fiber coil sensor for water-depth sensing

    NASA Astrophysics Data System (ADS)

    Fan, Chen-Feng; Yu, Chin-Ping

    2013-05-01

    We fabricate a PCF coil sensor for water-depth sensing by winding a PCF on a plastic straw. Due to the bending-induced birefringence along the PCF, we can observe clear interference pattern in the output spectrum by placing the PCF coil into a Sagnac fiber loop. As we horizontally immerse the fabricated PCF coil into water, a nonlinear relationship between the water depth and the wavelength shift can be obtained. We have also measured the interference spectrum by vertically immersing the PCF coil into water. We can observe a linear relationship between the water depth and the wavelength shift, and the measured water-depth sensitivity for vertical immersion is -1.17 nm/mm.

  2. Stomal Varices: Treatment by Percutaneous Transhepatic Coil Embolization

    SciTech Connect

    Kishimoto, Keiko; Hara, Akihiko; Arita, Takeshi; Tsukamoto, Katsuhiko; Matsui, Norichika; Kaneyuki, Toshihiro; Matsunaga, Naofumi

    1999-11-15

    Bleeding from stomal varices in a patient with portal hypertension, uncontrolled by surgical ligation and sclerotherapy, was well controlled by percutaneous transhepatic embolization with platinum and stainless-steel coils.

  3. Techniques For Microfabricating Coils For Microelectromechanical Systems Applications

    SciTech Connect

    Woods, R. C.; Powell, A. L.

    2008-01-21

    The advanced technology necessary for building future space exploration vehicles includes microfabricated coils for making possible self-inductances integrated with other passive and active electronic components. Integrated inductances make possible significant improvements in reliability over the traditional arrangement of using external discrete inductances, as well as allowing significant size (volume) reductions (also important in space vehicles). Two possible fabrication techniques (one using proprietary branded 'Foturan' glass, the other using silicon wafer substrates) for microscopic coils are proposed, using electroplating into channels. The techniques have been evaluated for fabricating the planar electrical coils needed for typical microelectromechanical systems applications. There remain problems associated with processing using 'Foturan' glass, but coil fabrication on silicon wafers was successful. Fabrication methods such as these are expected to play an important part in the development of systems and subsystems for forthcoming space exploration missions.

  4. Test data from the US-Demonstration Poloidal Coil experiment

    SciTech Connect

    Painter, T.A.; Steeves, M.M.; Takayasu, M.; Gung, C.; Hoenig, M.O.; Tsuji, H.; Ando, T.; Hiyama, T.; Takahashi, Y.; Nishi, M.; Yoshida, K.; Okuno, K.; Nakajima, H.; Kato, T.; Sugimoto, M.; Isono, T.; Kawano, K.; Koizumi, N.; Osikiri, M.; Hanawa, H.; Ouchi, H.; Ono, M.; Ishida, H.; Hiue, H.; Yoshida, J.; Kamiyauchi, Y.; Ouchi, T.; Tajiri, F.; Kon, Y.; Shimizu, H.; Matsuzaki, Y.; Oomori, S.; Tani, T.; Oomori, K.; Terakado, T.; Yagyu, J.; Oomori, H.

    1992-01-01

    The US Demonstration Poloidal Field Coil (US-DPC) experiment took place successfully at the Japan Atomic Energy Research Institute (JAERI) in late 1990. The 8 MJ niobium-tin coil was leak tight; it performed very well in DC tests; it performed well in AC tests, achieving approximately 70% of its design goal. An unexpected ramp-rate barrier at high currents was identified. The barrier could not be explored in the regime of higher fields and slower ramp rates due to limitations of the background-field coils. This document presents the results of the experiment with as little editing as possible. The coil, conductor, and operating conditions are given. The intent is to present data in a form that can be used by magnet analysts and designers.

  5. Techniques For Microfabricating Coils For Microelectromechanical Systems Applications

    NASA Astrophysics Data System (ADS)

    Woods, R. C.; Powell, A. L.

    2008-01-01

    The advanced technology necessary for building future space exploration vehicles includes microfabricated coils for making possible self-inductances integrated with other passive and active electronic components. Integrated inductances make possible significant improvements in reliability over the traditional arrangement of using external discrete inductances, as well as allowing significant size (volume) reductions (also important in space vehicles). Two possible fabrication techniques (one using proprietary branded "Foturan" glass, the other using silicon wafer substrates) for microscopic coils are proposed, using electroplating into channels. The techniques have been evaluated for fabricating the planar electrical coils needed for typical microelectromechanical systems applications. There remain problems associated with processing using "Foturan" glass, but coil fabrication on silicon wafers was successful. Fabrication methods such as these are expected to play an important part in the development of systems and subsystems for forthcoming space exploration missions.

  6. A Promising Adjuvant to Detachable Coils for Cavernous Packing: Onyx

    PubMed Central

    Lv, X.; Jiang, C.; Li, Y.; Wu, Z.

    2009-01-01

    Summary Transvenous embolization of cavernous dural arteriovenous fistulae (CDAVFs) with Onyx has recently been reported. This study was undertaken to assess the value of Onyx in transvenous treatment of CDAVFs. We retrospectively reviewed 18 patients who underwent transvenous embolization for CDAVFs of Barrow Type D with detachable coils and Onyx at our institution over five years. Patients were divided into two groups: group A, patients who had been treated with detachable coils; group B, patients who had been treated with a combination of detachable coils and Onyx. The approach routes, angiographic results, complications and clinical outcome were assessed for both groups. Eighteen patients with CDAVFs of Barrow Type D were treated: nine women and nine men; mean age was 41.9 years. Eleven patients treated by 19 procedures of transvenous coiling belonged to group A. Seven patients treated by eight procedures of transvenous Onyx injection belonged to group B. The periprocedural complication rate associated with coiling for both groups was 18.2% vs 16.7% with Onyx. The duration of the procedure in both groups was 6.77±2.49 hours vs 3.75±1.63 hours with coiling vs Onyx, and the cost of Onyx was cheaper than coils. An excellent outcome was achieved in both groups: 90.9% vs 100% (group A vs group B). Our results associated with both modalities of CDAVFs treatment with clinical outcome show that transvenous embolization with Onyx is a safe alternative to detachable coils in the treatment of CDAVFs. However, more cases need to be evaluated. PMID:20465891

  7. NSTX-U Digital Coil Protection System Software Detailed Design

    SciTech Connect

    2014-06-01

    The National Spherical Torus Experiment (NSTX) currently uses a collection of analog signal processing solutions for coil protection. Part of the NSTX Upgrade (NSTX-U) entails replacing these analog systems with a software solution running on a conventional computing platform. The new Digital Coil Protection System (DCPS) will replace the old systems entirely, while also providing an extensible framework that allows adding new functionality as desired.

  8. Preliminary Report on the Thrombogenic Properties of Tantalum-GDC Coils

    PubMed Central

    Guglielmi, G.

    2008-01-01

    Summary In order to overcome the possibility of recanalization and compaction with Platinum GDC coils Tantalum coils were placed in three aneurysms in swine. Comparative coiling was done on the other side in each animal with platinum GDC. More stable thrombus was observed on the aneurysms coiled with Tantalum GDC. PMID:20557785

  9. Thermal Stability Analysis for Superconducting Coupling Coil in MICE

    SciTech Connect

    Wu, Hong; Wang, Li; Pan, Heng; Guo, XingLong; Green, M.A.

    2010-06-28

    The superconducting coupling coil to be used in the Muon Ionization Cooling Experiment (MICE) with inner radius of 750 mm, length of 285 mm and thickness of 110.4 mm will be cooled by a pair of 1.5 W at 4.2 K cryo-coolers. When the coupling coil is powered to 210 A, it will produce about 7.3 T peak magnetic field at the conductor and it will have a stored energy of 13 MJ. A key issue for safe operation of the coupling coil is the thermal stability of the coil during a charge and discharge. The magnet and its cooling system are designed for a rapid discharge where the magnet is to be discharged in 5400 seconds. The numerical simulation for the thermal stability of the MICE coupling coil has been done using ANSYS. The analysis results show that the superconducting coupling coil has a good stability and can be charged and discharged safely.

  10. Design of a superconducting 20 MJ induction heating coil

    SciTech Connect

    Singh, S.K.; Ibrahim, E.A.; Gaberson, P.C.; Eckels, P.W.; Jarabak, A.J.; Rogers, J.D.; Thullen, P.; Walker, M.S.

    1980-01-01

    A pancake-wound, low-loss, superconducting, induction-heating coil has been designed to demonstrate the feasibility of superconducting polaidal system for the Tokamak reactors, to provide confidence in application of superconductivity to actual reactors, and to provide the opportunity to solve specific engineering problems to support the fusion pulsed coil program. the coil is designed to store 20 MJ at 50 kA. The superconductor material is NbTi for a 7.5 tesla maximum field. The coil is designed to survive at least 100,000 cycles of full bipolar half cycle sinusoidal operation from +7.5 tesla to -7.5 telsa fields in one second. The coil is natural convection immersion-cooled at 4.5/sup 0/K in liquid helium bath. The design demonstrates confidence in an advanced design, low-loss, cryostable conductor, along with safety, reliability and the operating life of the coil of more than 100,000 cycles.

  11. Coiled tubing velocity string hangoff method and apparatus

    SciTech Connect

    Gipson, T.C.

    1991-07-02

    This patent describes a method for hanging off a coiled tube velocity string in an active gas production well tubing run, the run having at least a master valve and a first line valve. It includes installing a hangoff assembly in the production well tubing run between the master valve and the first line valve the hangoff assembly comprising a hangoff head, a second line valve, an upper valve, and a hydraulic packoff valve, the hangoff head further comprising a threaded body member, a slip bowl and a threaded cap; inserting through the hydraulic packoff valve, the upper valve, and the hangoff head, coiled tubing for fluid communication with well gases and fluids in the production well tubing run, the coiled tubing having a first downhole end being open to immediately receive and conduct the gases and fluids; opening gas and fluid communication between the production well tubing run and the open end of the coiled tubing whereby the well gases and fluid may pass up through the coiled tubing, the hangoff head sealing the gases and fluids from passing to the hydraulic packoff valve, the upper valve and the second line valve; further inserting the coiled tubing to a desired depth in the production well tubing run; and rotating the cap of the hangoff head to expose the slip bowl.

  12. Logging with coiled tubing less effective than with drill pipe

    SciTech Connect

    Van Den Bosch, R. )

    1994-01-31

    Coiled tubing offered neither economic nor operational advantages over drill pipe for conveying logging tools in open hole shallow horizontal wells in Germany. In the past 2 years, Mobil Erdgas-Erdoel GMbH (MEEG) participated in completing eight shallow horizontal wells. These were medium-to-short radius wells at measured depths of between 850 and 2,000 m. The average horizontal section was 350 m. The logging tools were conveyed by coiled tubing or drill pipe. MEEG attempted to log five wells with coiled tubing-conveyed tools, four with 1 1/2-in. tubing. Total depth was reached reliably in only one well, the shallowest and with the shortest horizontal section. Simulation programs were unreliable for calculating the downhole forces of the coil/tool combination or predicting possible helical lockups. In wells with drill pipe-conveyed logs, the tool combination could always be pushed to total depth, and the operations were generally faster and cost less than logging with coiled tubing. Also, drill pipe allowed longer and heavier tool strings. For reliable operations, coiled tubing needs to be more rigid, rig-up/rig-down times need to be improved, and the simulation programs must be more reliable for predicting downhole lock-up.

  13. Automatic tuning of flexible interventional RF receiver coils.

    PubMed

    Venook, Ross D; Hargreaves, Brian A; Gold, Garry E; Conolly, Steven M; Scott, Greig C

    2005-10-01

    Microcontroller-based circuitry was built and tested for automatically tuning flexible RF receiver coils at the touch of a button. This circuitry is robust to 10% changes in probe center frequency, is in line with the scanner, and requires less than 1 s to tune a simple probe. Images were acquired using this circuitry with a varactor-tunable 1-inch flexible probe in a phantom and in an in vitro porcine knee model. The phantom experiments support the use of automatic tuning by demonstrating 30% signal-to-noise ratio (SNR) losses for 5% changes in coil center frequency, in agreement with theoretical calculations. Comparisons between patellofemoral cartilage images obtained using a 3-inch surface coil and the surgically-implanted 1-inch flexible coil reveal a worst-case local SNR advantage of a factor of 4 for the smaller coil. This work confirms that surgically implanted coils can greatly improve resolution in small-field-of-view (FOV) applications, and demonstrates the importance and feasibility of automatically tuning such probes.

  14. The Use of Correcting Coils in End Magnets Accelerators

    NASA Astrophysics Data System (ADS)

    Kassab, L. R. P.; Gouffon, P.

    1997-05-01

    The end magnets of the race-track microtron booster (L.R.P. Kassab, PhD Thesis, IFUSP, 1996) , which is the second stage of the 30.0 MeV cw electron accelerator under construction at IFUSP, play a fundamental role in terms of the beam quality. Their efficiency depends on the behavior of the magnetic fields that deflect, focus and return the beam to the accelerating section. The use of correcting coils, based on the inhomogeneities of the magnetic field and attached to the pole faces, assured uniformity of 10-5. We present the performance of these coils when operating the end magnets with currents that differ from the one used in the mappings that originated the coils copper leads. For one of the magnets, adjusting conveniently the current of the correcting coils, made it possible to homogenize field distributions of different intensities, once their shapes are identical to those that originated the coils. For the other one, the shapes are smoothly changed and the coils are less efficient. This is related to intrinsic factors that determine the inhomogeneities. However, in both cases we obtained uniformity of 10-5.

  15. Effect of Metal Proximity on a Pulsed Copper Coil

    NASA Astrophysics Data System (ADS)

    Johnson, H. K.; Schaffner, D. A.; Brown, M. R.; Kaur, M.; Fiedler-Kawaguchi, C.

    2016-10-01

    Generating and accelerating plasma in a stainless steel chamber affects the magnetic fields inside. These effects will decrease the field due to a pulsed coil (which will later be used to accelerate plasma) inside the chamber. This work is being done in conjunction with the Swarthmore Spheromak Experiment. Both facilities are collaborating in an attempt to accelerate and compress plasma as part of ARPA-E's Accelerating Low-Cost Plasma Heating and Assembly (ALPHA) program. Measurements of the impact of the chamber on the coil's magnetic fields were made using a B-dot probe inside the coil, which was placed at incremental distances from a metal plate. As the coil is moved from the plate, the plate's interference with the field was seen to exponentially decay. This process was repeated for stainless steel, aluminum, and copper, and a range of voltages (500-800V). At least seventy percent of the original signal was recovered within two inches. Pulsing the coil inside the stainless steel chamber resulted in signals about one third the strength of those measured outside of the chamber. The results of this experiment will be used to guide development of the stainless steel pulse-coil system for the Swarthmore ALPHA project. Work supported by ARPA-E ALPHA program.

  16. Performance of a 12-coil superconducting bumpy torus magnet facility

    NASA Technical Reports Server (NTRS)

    Roth, J. R.; Holmes, A. D.; Keller, T. A.; Krawczonek, W. M.

    1972-01-01

    The bumpy torus facility consists of 12 superconducting coils, each 19 cm i.d. and capable of 3.0 teslas on their axes. The coils are equally spaced around a toroidal array with a major diameter of 1.52 m, and are mounted with the major axis of the torus vertical in a single vacuum tank 2.6 m in diameter. Final shakedown tests of the facility mapped out its magnetic, cryogenic, vacuum, mechanical, and electrical performance. The facility is now ready for use as a plasma physics research facility. A maximum magnetic field on the magnetic axis of 3.23 teslas was held for a period of more than sixty minutes without a coil normalcy. The design field was 3.00 teslas. The steady-state liquid helium boil-off rate was 87 liters per hour of liquid helium without the coils charged. The coil array was stable when subjected to an impulsive loading, even with the magnets fully charged. When the coils were charged to a maximum magnetic field of 3.35 teslas, the system was driven normal without damage.

  17. NMR of thin layers using a meanderline surface coil

    DOEpatents

    Cowgill, Donald F.

    2001-01-01

    A miniature meanderline sensor coil which extends the capabilities of nuclear magnetic resonance (NMR) to provide analysis of thin planar samples and surface layer geometries. The sensor coil allows standard NMR techniques to be used to examine thin planar (or curved) layers, extending NMRs utility to many problems of modern interest. This technique can be used to examine contact layers, non-destructively depth profile into films, or image multiple layers in a 3-dimensional sense. It lends itself to high resolution NMR techniques of magic angle spinning and thus can be used to examine the bonding and electronic structure in layered materials or to observe the chemistry associated with aging coatings. Coupling this sensor coil technology with an arrangement of small magnets will produce a penetrator probe for remote in-situ chemical analysis of groundwater or contaminant sediments. Alternatively, the sensor coil can be further miniaturized to provide sub-micron depth resolution within thin films or to orthoscopically examine living tissue. This thin-layer NMR technique using a stationary meanderline coil in a series-resonant circuit has been demonstrated and it has been determined that the flat meanderline geometry has about he same detection sensitivity as a solenoidal coil, but is specifically tailored to examine planar material layers, while avoiding signals from the bulk.

  18. A 3T Sodium and Proton Composite Array Breast Coil

    PubMed Central

    Kaggie, Joshua D.; Hadley, J. Rock; Badal, James; Campbell, John R.; Park, Daniel J.; Parker, Dennis L.; Morrell, Glen; Newbould, Rexford D.; Wood, Ali F.; Bangerter, Neal K.

    2013-01-01

    Purpose The objective of this study was to determine whether a sodium phased array would improve sodium breast MRI at 3T. The secondary objective was to create acceptable proton images with the sodium phased array in place. Methods A novel composite array for combined proton/sodium 3T breast MRI is compared to a coil with a single proton and sodium channel. The composite array consists of a 7-channel sodium receive array, a larger sodium transmit coil, and a 4-channel proton transceive array. The new composite array design utilizes smaller sodium receive loops than typically used in sodium imaging, uses novel decoupling methods between the receive loops and transmit loops, and uses a novel multi-channel proton transceive coil. The proton transceive coil reduces coupling between proton and sodium elements by intersecting the constituent loops to reduce their mutual inductance. The coil used for comparison consists of a concentric sodium and proton loop with passive decoupling traps. Results The composite array coil demonstrates a 2–5x improvement in SNR for sodium imaging and similar SNR for proton imaging when compared to a simple single-loop dual resonant design. Conclusion The improved SNR of the composite array gives breast sodium images of unprecedented quality in reasonable scan times. PMID:24105740

  19. RF Coil Considerations for Short-T2 MRI

    PubMed Central

    Horch, R. Adam; Wilkens, Ken; Gochberg, Daniel F.; Does, Mark D.

    2010-01-01

    With continuing hardware and pulse sequence advancements, modern MRI is gaining sensitivity to signals from short-T2 1H species under practical experimental conditions. However, conventional MRI coils are typically not designed for this type of application they often contain proton-rich construction materials which may contribute confounding 1H background signal during short-T2 measurements. An example of this is shown herein. Separately, a loop-gap style coil was used to compare different coil construction materials and configurations with respect to observed 1H background signal sizes in a small animal imaging system. Background signal sources were spatially identified and quantified in a number of different coil configurations. It was found that the type and placement of structural coil materials around the loop-gap resonator, as well as the coil’s shielding configuration, are critical determinants of the coil’s background signal size. Although this study employed a loop-gap resonator design, these findings are directly relevant to standard volume coils commonly used for MRI. PMID:20665825

  20. Improved SNR of phased-array PERES coils via simulation study.

    PubMed

    Rodríguez, Alfredo O; Medina, Lucía

    2005-09-21

    A computational comparison of signal-to-noise ratio (SNR) was performed between a conventional phased array of two circular-shaped coils and a petal resonator surface array. The quasi-static model and phased-array optimum SNR were combined to derive an SNR formula for each array. Analysis of mutual inductance between coil petals was carried out to compute the optimal coil separation and optimum number of petal coils. Mutual interaction between coil arrays was not included in the model because this does not drastically affect coil performance. Phased arrays of PERES coils show a 114% improvement in SNR over that of the simplest circular configuration.

  1. [Surgical Removal of Migrated Coil after Embolization of Jejunal Variceal Bleeding: A Case Report].

    PubMed

    Kim, Junhwan; Lee, Danbi; Oh, Kyunghwan; Lee, Mingee; So, Seol; Yang, Dong Hoon; Kim, Chan Wook; Gwon, Dong Il; Chung, Young Hwa

    2017-01-25

    Jejunal variceal bleeding is less common compared with esophagogastric varices in patients with portal hypertension. However, jejunal variceal bleeding can be fatal without treatment. Treatments include surgery, transjugular intrahepatic porto-systemic shunt (TIPS), endoscopic sclerotherapy, percutaneous coil embolization, and balloon-occluded retrograde transvenous obliteration (BRTO). Percutaneous coil embolization can be considered as an alternative treatment option for those where endoscopic sclerotherapy, surgery, TIPS or BRTO are not possible. Complications of percutaneous coil embolization have been reported, including coil migration. Herein, we report a case of migration of the coil into the jejunal lumen after percutaneous coil embolization for jejunal variceal bleeding. The migrated coil was successfully removed using surgery.

  2. The coiled-coil domain of zebrafish TRPM7 regulates Mg·nucleotide sensitivity

    PubMed Central

    Jansen, Chad; Sahni, Jaya; Suzuki, Sayuri; Horgen, F. David; Penner, Reinhold; Fleig, Andrea

    2016-01-01

    TRPM7 is a member of the Transient-Receptor-Potential Melastatin ion channel family. TRPM7 is a unique fusion protein of an ion channel and an α-kinase. Although mammalian TRPM7 is well characterized biophysically and its pivotal role in cancer, ischemia and cardiovascular disease is becoming increasingly evident, the study of TRPM7 in mouse models has been hampered by embryonic lethality of transgenic ablations. In zebrafish, functional loss of TRPM7 (drTRPM7) manifests itself in an array of non-lethal physiological malfunctions. Here, we investigate the regulation of wild type drTRPM7 and multiple C-terminal truncation mutants. We find that the biophysical properties of drTRPM7 are very similar to mammalian TRPM7. However, pharmacological profiling reveals that drTRPM7 is facilitated rather than inhibited by 2-APB, and that the TRPM7 inhibitor waixenicin A has no effect. This is reminiscent of the pharmacological profile of human TRPM6, the sister channel kinase of TRPM7. Furthermore, using truncation mutations, we show that the coiled-coil domain of drTRPM7 is involved in the channel’s regulation by magnesium (Mg) and Mg·adenosine triphosphate (Mg·ATP). We propose that drTRPM7 has two protein domains that regulate inhibition by intracellular magnesium and nucleotides, and one domain that is concerned with sensing magnesium only. PMID:27628598

  3. NEMO trimerizes through its coiled-coil C-terminal domain.

    PubMed

    Agou, Fabrice; Ye, Fei; Goffinont, Stéphane; Courtois, Gilles; Yamaoka, Shoji; Israël, Alain; Véron, Michel

    2002-05-17

    NEMO/IkappaB kinase (IKK) gamma is the regulatory component of the IKK complex comprising the two protein kinases, IKKalpha and IKKbeta. To investigate the self-assembly properties of NEMO and to understand further the mechanism of activation of the IKK complex, we purified wild-type and mutant NEMO expressed in Escherichia coli. In the absence of its IKK partners, recombinant NEMO (rNEMO) is a metastable functional monomer correctly folded, according to its fluorescence and far-UV CD spectra, which is binding specifically to the IKK complex. A minor fraction of rNEMO was found tightly associated with DnaK (E. coli Hsp70). We also examined the interaction of NEMO with prokaryotic and eukaryotic Hsp70, and we showed that the Hsp70-NEMO complex forms a supramolecular structure probably corresponding to an assembly intermediate. In vivo cross-linking experiments indicate that native NEMO in association with IKK is in equilibrium between a dimeric and a trimeric form. Similarly to native NEMO, a NEMO mutant deleted from its IKK binding N-terminal domain (residues 242-388) forms a stable trimeric coiled-coil, suggesting that the association of NEMO with IKK or with Hsp70 prevents incorrect interdomain pairing reactions that could lead to aggregation or to an non-native oligomeric state of rNEMO. We propose a model in which the activation of the IKK complex occurs through the trimerization of NEMO upon binding to a not yet identified upstream activator.

  4. Transforming the Energy Landscape of a Coiled-Coil Peptide via Point Mutations.

    PubMed

    Röder, Konstantin; Wales, David J

    2017-03-14

    We analyze the effect of point mutations on the energy landscape of a coiled-coil peptide, GCN4-pLI, where the native state is a parallel tetrameric configuration formed from two identical dimers. Experimentally, a single mutation, E20S, supports both antiparallel and parallel structures. Here, we analyze the potential energy landscapes of the dimeric units for the parent sequence and four mutants, namely E20S, E20A, E20P, and E20G. Despite sharing characteristic funnels containing the parallel and antiparallel structures, the point mutations change some parts of the landscape quite dramatically, and we predict new intermediate structures and characterize the associated heat capacities. For the mutants we predict that kinked intermediate structures facilitate the transition between parallel and antiparallel morphologies, in contrast to the parent sequence. Furthermore, we predict a change from a multifunnel energy landscape in the E20S mutant to a landscape dominated by an underlying single funnel in the parent sequence, with accompanying heat capacity signatures. Our results imply that changes in the landscape due to mutations might provide useful tools for functional protein design.

  5. Tropomyosin is an interaction partner of the Drosophila coiled coil protein yuri gagarin.

    PubMed

    Texada, Michael J; Simonette, Rebecca A; Deery, William J; Beckingham, Kathleen M

    2011-02-15

    The Drosophila gene yuri gagarin is a complex locus encoding three protein isoform classes that are ubiquitously expressed in the organism. Mutations to the gene affect processes as diverse as gravitactic behavior and spermatogenesis. The larger Yuri isoforms contain extensive coiled-coil regions. Our previous studies indicate that one of the large isoform classes (Yuri-65) is required for formation of specialized F-actin-containing structures generated during spermatogenesis, including the so-called actin "cones" that mediate spermatid individualization. We used the tandem affinity purification of a tagged version of Yuri-65 (the TAP-tagging technique) to identify proteins associated with Yuri-65 in the intact organism. Tropomyosin, primarily as the 284-residue isoform derived from the ubiquitously expressed Tropomyosin 1 gene was thus identified as a major Yuri interaction partner. Co-immunoprecipitation experiments confirmed this interaction. We have established that the stable F-actin cones of spermatogenesis contain Tropomyosin 1 (Tm1) and that in mutant yuri(F64), failure of F-actin cone formation is associated with failure of Tm1 to accumulate at the cone initiation sites. In investigating possible interactions of Tm1 and Yuri in other tissues, we discovered that Tm1 and Yuri frequently colocalize with the endoplasmic reticulum. Tropomyosin has been implicated in actin-mediated membrane trafficking activity in other systems. Our findings suggest that Yuri-Tm1 complexes participate in related functions.

  6. TROPOMYOSIN IS AN INTERACTION PARTNER OF THE DROSOPHILA COILED COIL PROTEIN YURI GAGARIN

    PubMed Central

    Texada, Michael J.; Simonette, Rebecca A.; Deery, William J.; Beckingham, Kathleen M.

    2011-01-01

    The Drosophila gene yuri gagarin is a complex locus encoding three protein isoform classes that are ubiquitously expressed in the organism. Mutations to the gene affect processes as diverse as gravitactic behavior and spermatogenesis. The larger Yuri isoforms contain extensive coiled-coil regions. Our previous studies indicate that one of the large isoform classes (Yuri-65) is required for formation of specialized F-actin-containing structures generated during spermatogenesis, including the so-called actin “cones” that mediate spermatid individualization. We used tandem affinity purification of a tagged version of Yuri-65 (the TAP-tagging technique) to identify proteins associated with Yuri-65 in the intact organism. Tropomyosin, primarily as the 284-residue isoform derived from the ubiquitously expressed Tropomyosin 1 gene was thus identified as a major Yuri interaction partner. Co-immunoprecipitation experiments confirmed this interaction. We have established that the stable F-actin cones of spermatogenesis contain Tropomyosin 1 (Tm1) and that in mutant yuriF64, failure of F-actin cone formation is associated with failure of Tm1 to accumulate at the cone initiation sites. In investigating possible interactions of Tm1 and Yuri in other tissues, we discovered that Tm1 and Yuri frequently colocalize with the endoplasmic reticulum. Tropomyosin has been implicated in actin-mediated membrane trafficking activity in other systems. Our findings suggest that Yuri-Tm1 complexes participate in related functions. PMID:21126519

  7. Expression and characterization of transmembrane and coiled-coil domain family 3

    PubMed Central

    Sohn, Wern-Joo; Kim, Jae-Young; Kim, Dongbum; Park, Jeong-A; Lee, Younghee; Kwon, Hyung-Joo

    2016-01-01

    Transmembrane and coiled-coil domain family 3 (TMCC3) has been reported to be expressed in the human brain; however, its function is still unknown. Here, we found that expression of TMCC3 is higher in human whole brain, testis and spinal cord compared to other human tissues. TMCC3 was expressed in mouse developing hind brain, lung, kidney and somites, with strongest expression in the mesenchyme of developing tongue. By expression of recombinant TMCC3 and its deletion mutants, we found that TMCC3 proteins self-assemble to oligomerize. Immunostaining and confocal microscopy data revealed that TMCC3 proteins are localized in endoplasmic reticulum through transmembrane domains. Based on immunoprecipitation and mass spectroscopy data, TMCC3 proteins associate with TMCC3 and 14-3-3 proteins. This supports the idea that TMCC3 proteins form oligomers and that 14-3-3 may be involved in the function of TMCC3. Taken together, these results may be useful for better understanding of uncharacterized function of TMCC3. PMID:27697108

  8. Ndm, a coiled-coil domain protein that suppresses macropinocytosis and has effects on cell migration

    PubMed Central

    Kelsey, Jessica S.; Fastman, Nathan M.; Noratel, Elizabeth F.; Blumberg, Daphne D.

    2012-01-01

    The ampA gene has a role in cell migration in Dictyostelium discoideum. Cells overexpressing AmpA show an increase in cell migration, forming large plaques on bacterial lawns. A second-site suppressor of this ampA-overexpressing phenotype identified a previously uncharacterized gene, ndm, which is described here. The Ndm protein is predicted to contain a coiled-coil BAR-like domain—a domain involved in endocytosis and membrane bending. ndm-knockout and Ndm-monomeric red fluorescent protein–expressing cell lines were used to establish a role for ndm in suppressing endocytosis. An increase in the rate of endocytosis and in the number of endosomes was detected in ndm− cells. During migration ndm− cells formed numerous endocytic cups instead of the broad lamellipodia structure characteristic of moving cells. A second lamellipodia-based function—cell spreading—was also defective in the ndm− cells. The increase in endocytosis and the defect in lamellipodia formation were associated with reduced chemotaxis in ndm− cells. Immunofluorescence results and glutathione S-transferase pull-down assays revealed an association of Ndm with coronin and F-actin. The results establish ndm as a gene important in regulating the balance between formation of endocytic cups and lamellipodia structures. PMID:22809629

  9. Midbody Targeting of the ESCRT Machinery by a Noncanonical Coiled Coil in CEP55

    SciTech Connect

    Lee, Hyung Ho; Elia, Natalie; Ghirlando, Rodolfo; Lippincott-Schwartz, Jennifer; Hurley, James H.

    2008-11-14

    The ESCRT (endosomal sorting complex required for transport) machinery is required for the scission of membrane necks in processes including the budding of HIV-1 and cytokinesis. An essential step in cytokinesis is recruitment of the ESCRT-I complex and the ESCRT-associated protein ALIX to the midbody (the structure that tethers two daughter cells) by the protein CEP55. Biochemical experiments show that peptides from ALIX and the ESCRT-I subunit TSG101 compete for binding to the ESCRT and ALIX-binding region (EABR) of CEP55. We solved the crystal structure of EABR bound to an ALIX peptide at a resolution of 2.0 angstroms. The structure shows that EABR forms an aberrant dimeric parallel coiled coil. Bulky and charged residues at the interface of the two central heptad repeats create asymmetry and a single binding site for an ALIX or TSG101 peptide. Both ALIX and ESCRT-I are required for cytokinesis, which suggests that multiple CEP55 dimers are required for function.

  10. A family of small coiled-coil-forming proteins functioning at the late endosome in yeast.

    PubMed

    Kranz, A; Kinner, A; Kölling, R

    2001-03-01

    The multispanning membrane protein Ste6, a member of the ABC-transporter family, is transported to the yeast vacuole for degradation. To identify functions involved in the intracellular trafficking of polytopic membrane proteins, we looked for functions that block Ste6 transport to the vacuole upon overproduction. In our screen, we identified several known vacuolar protein sorting (VPS) genes (SNF7/VPS32, VPS4, and VPS35) and a previously uncharacterized open reading frame, which we named MOS10 (more of Ste6). Sequence analysis showed that Mos10 is a member of a small family of coiled-coil-forming proteins, which includes Snf7 and Vps20. Deletion mutants of all three genes stabilize Ste6 and show a "class E vps phenotype." Maturation of the vacuolar hydrolase carboxypeptidase Y was affected in the mutants and the endocytic tracer FM4-64 and Ste6 accumulated in a dot or ring-like structure next to the vacuole. Differential centrifugation experiments demonstrated that about half of the hydrophilic proteins Mos10 and Vps20 was membrane associated. The intracellular distribution was further analyzed for Mos10. On sucrose gradients, membrane-associated Mos10 cofractionated with the endosomal t-SNARE Pep12, pointing to an endosomal localization of Mos10. The growth phenotypes of the mutants suggest that the "Snf7-family" members are involved in a cargo-specific event.

  11. An engineered coiled-coil polypeptide assembled onto quantum dots for targeted cell imaging

    NASA Astrophysics Data System (ADS)

    Yao, Ming-Hao; Yang, Jie; Song, Ji-Tao; Zhang, Lin; Fang, Bi-Yun; Zhao, Dong-Hui; Xia, Rui-Xue; Jin, Rui-Mei; Zhao, Yuan-Di; Liu, Bo

    2015-12-01

    Quantum dot (QD)-polypeptide probes have been developed through the specific metal-affinity interaction between polypeptides appended with N-terminal polyhistidine sequences and CdSe/ZnS core-shell QDs. The size and charge of a QD-polypeptide can be tuned by using different coiled-coil polypeptides. Compared to glutathione-capped QDs (QD-GSH), QD-polypeptide probes showed an approximately two- to three-fold luminescence increase, and the luminescence increase was not obviously related to the charge of the polypeptide. QD-polypeptide probes with different charge have a great effect on nonspecific cellular uptake. QD-polypeptide probes with negative charge exhibited lower nonspecific cellular uptake in comparison to the QD-GSH, while positively charged QD-polypeptide probes presented higher cellular uptake than the QD-GSH. A targeted QD-ARGD probe can obviously increase targeted cellular uptake in α v β 3 overexpressing HeLa cells compared to QD-A. In addition, QD-polypeptide probes showed lower in vitro cytotoxicity compared to the original QDs. These results demonstrate that these QD-polypeptide probes with high specific cellular uptake, high fluorescence intensity and low background noise are expected to have great potential applications in targeted cell imaging.

  12. Coiled Coil Rich Proteins (Ccrp) Influence Molecular Pathogenicity of Helicobacter pylori

    PubMed Central

    Schätzle, Sarah; Specht, Mara; Waidner, Barbara

    2015-01-01

    Pathogenicity of the human pathogen Helicobacter pylori relies on its capacity to adapt to a hostile environment and to escape the host response. Although there have been great advances in our understanding of the bacterial cytoskeleton, major gaps remain in our knowledge of its contribution to virulence. In this study we have explored the influence of coiled coil rich proteins (Ccrp) cytoskeletal elements on pathogenicity factors of H. pylori. Deletion of any of the ccrp resulted in a strongly decreased activity of the main pathogenicity factor urease. We further investigated their role using in vitro co-culture experiments with the human gastric adenocarcinoma cell line AGS modeling H. pylori - host cell interactions. Intriguingly, host cell showed only a weak “scattering/hummingbird” phenotype, in which host cells are transformed from a uniform polygonal shape into a severely elongated state characterized by the formation of needle-like projections, after co-incubation with any ccrp deletion mutant. Furthermore, co-incubation with the ccrp59 mutant resulted in reduced type IV secretion system associated activities, e.g. IL-8 production and CagA translocation/phosphorylation. Thus, in addition to their role in maintaining the helical cell shape of H. pylori Ccrp proteins influence many cellular processes and are thereby crucial for the virulence of this human pathogen. PMID:25822999

  13. Coiled tubing drilling with supercritical carbon dioxide

    DOEpatents

    Kolle , Jack J.

    2002-01-01

    A method for increasing the efficiency of drilling operations by using a drilling fluid material that exists as supercritical fluid or a dense gas at temperature and pressure conditions existing at a drill site. The material can be used to reduce mechanical drilling forces, to remove cuttings, or to jet erode a substrate. In one embodiment, carbon dioxide (CO.sub.2) is used as the material for drilling within wells in the earth, where the normal temperature and pressure conditions cause CO.sub.2 to exist as a supercritical fluid. Supercritical carbon dioxide (SC--CO.sub.2) is preferably used with coiled tube (CT) drilling equipment. The very low viscosity SC--CO.sub.2 provides efficient cooling of the drill head, and efficient cuttings removal. Further, the diffusivity of SC--CO.sub.2 within the pores of petroleum formations is significantly higher than that of water, making jet erosion using SC--CO.sub.2 much more effective than water jet erosion. SC--CO.sub.2 jets can be used to assist mechanical drilling, for erosion drilling, or for scale removal. A choke manifold at the well head or mud cap drilling equipment can be used to control the pressure within the borehole, to ensure that the temperature and pressure conditions necessary for CO.sub.2 to exist as either a supercritical fluid or a dense gas occur at the drill site. Spent CO.sub.2 can be vented to the atmosphere, collected for reuse, or directed into the formation to aid in the recovery of petroleum.

  14. Analytic approach to the design of transverse gradient coils with co-axial return paths.

    PubMed

    Bowtell, R; Peters, A

    1999-03-01

    Transverse gradient coils with co-axial return paths offer reduced acoustic noise compared with standard cylindrical gradient coils, due to local force balancing, and can also easily be made to have a length to diameter ratio that is less than one. Analytic expressions for the magnetic field and vector potential generated by this type of coil are described here, along with a formula for calculating the coil inductance. It is shown that these expressions allow the implementation of powerful analytic methods of coil design, as well as the incorporation of active magnetic screening. It is also demonstrated how the mathematics specifies the best parameters to use when designing coils with small numbers of elements. A head gradient coil for use at 3.0 T has been designed using the analytic approach described here. The process of coil design and construction is outlined and the performance of the coil in comparison with a similar standard cylindrical coil is described.

  15. Application of anatomically shaped surface coils in MRI at 0.5 T.

    PubMed

    Doornbos, J; Grimbergen, H A; Booijen, P E; te Strake, L; Bloem, J L; Vielvoye, G J; Boskamp, E

    1986-04-01

    The construction and application of eight different MRI surface coils is described. The coils consist of an anatomically shaped copper wire loop as an antenna and a printed circuit board containing electronic components for tuning and matching. The electronic device for tuning and matching is interchangeable between the various coils. Surface coils for signal detection yield images with high signal-to-noise ratio in comparison to the usual saddle-shaped head or body coils. The sensitivity of a surface coil decreases with increasing distance between the coil and the object of interest and therefore the coils are constructed to fit the anatomical structure under examination as well as possible. The application of dedicated surface coils for superficial structures in the body extends the possibilities of the MRI system. Photographs of the coils positioned on the body and MR images of volunteers and patients are shown.

  16. Feasibility study of a novel pressure recovery system for CO2-COIL based on chemical absorption

    NASA Astrophysics Data System (ADS)

    Li, Qingwei; Jin, Yuqi; Geng, Zicai; Li, Yongzhao; Zhang, Yuelong; Sang, Fengting

    2015-02-01

    A chemical oxygen-iodine laser (COIL) is an electronic transition, low pressure, high throughput system. The use of this laser demands a suitable pressure recovery system. This paper proposed a novel pressure recovery system based on chemical absorption and the feasibility for COIL with CO2 as buffer gas (CO2-COIL) was investigated. The novel pressure recovery system works by chemisorbing the CO2-COIL effluents into two fixed-beds maintained at initial temperature of around 293-323K. Compared with the cryosorption system for N2-COIL based on physical absorption, the novel chemisorptions based pressure recovery system has a simpler logistics and a shorter run-to-run preparation time. Two kinds of solid chemo-sorbents were designed and synthesized. One was used for chemisorbing the oxidizing gases such as O2 ,Cl2 and I2, another was used for chemisorbing the acidic gas such as CO2. The capacities of the two sorbents were measured to be 3.12 mmol(O2)/g and 3.84 mmol (CO2) /g, respectively. It indicated that the synthesized sorbents could effectively chemosorb the CO2-COIL effluents. Secondly, analog test equipment was set up and used to study the feasibility of the novel pressure recovery system used for CO2-COIL. The test results showed that the novel pressure recovery system could maintain the pressure under 6 Torr for tens seconds under the continuous gas flow. It showed that the novel pressure recovery system for CO2-COIL based on chemical absorption is feasible.

  17. Testing of a Single 11 T $Nb_3Sn$ Dipole Coil Using a Dipole Mirror Structure

    SciTech Connect

    Zlobin, Alexander; Andreev, Nicolai; Barzi, Emanuela; Chlachidze, Guram; Kashikhin, Vadim; Nobrega, Alfred; Novitski, Igor; Turrioni, Daniele; Karppinen, Mikko; Smekens, David

    2014-07-01

    FNAL and CERN are developing an 11 T Nb3Sn dipole suitable for installation in the LHC. To optimize coil design parameters and fabrication process and study coil performance, a series of 1 m long dipole coils is being fabricated. One of the short coils has been tested using a dipole mirror structure. This paper describes the dipole mirror magnetic and mechanical designs, and reports coil parameters and test results.

  18. Method of eliminating the training effect in superconducting coils by post-wind preload

    DOEpatents

    Heim, Joseph R.

    1976-01-01

    The training effect in superconducting coils is eliminated by winding the coil with a composite material that includes both a superconductor and a normal material and then applying stresses to the wound coil in the direction that electromagnetic stresses will be applied to the coil during normal use and in a magnitude greater than the calculated magnitude of the greatest electromagnetic stresses to be applied to the coil.

  19. The Influence of Dome Size, Parent Vessel Angle, and Coil Packing Density on Coil Embolization Treatment in Cerebral Aneurysms

    NASA Astrophysics Data System (ADS)

    Frakes, David H.; Indahlastari, Aprinda; Ryan, Justin; Babiker, M. Haithem; Nair, Priya; Parthas, Varsha

    2013-11-01

    Intracranial aneurysms (ICAs) are dilated cerebral blood vessels. Treating ICAs effectively prior rupture is crucial since their association with 45% mortality rate. Embolic coiling is the most effective ICA treatment. Series of embolic coils are deployed into the aneurysm with the intent of reaching a sufficient packing density (PD) to help seal off the ICA from circulation. While coiling is effective, treatment failures have been associated with basilar tip aneurysms (BTAs), perhaps because of their geometry. The aim of this study was to examine the effect of dome size, parent vessel (PV) angle, and PD on intraaneurysmal (IA) velocity, crossneck (CN) flow and low wall shear stress (WSS) area using simulations and experiments in idealized BTA models. IA velocity and CN flow decreased after coiling, while low WSS area increased. With increasing PD, IA velocity and CN flow were further reduced, but low WSS area had a minimal change. Coil PD had the greatest impact on post-treatment flow while dome size had a greater impact than PV angle. Overall, the role of aneurysmal geometries may vary depending on treatment goal and timing e.g., high coil PD may reduce IA velocity more effectively during early aneurysmal growth when the dome size is small. Funded by the American Heart Association.

  20. Coiled-coil unwinding at the smooth muscle myosin head-rod junction is required for optimal mechanical performance.

    PubMed Central

    Lauzon, A M; Fagnant, P M; Warshaw, D M; Trybus, K M

    2001-01-01

    Myosin II has two heads that are joined together by an alpha-helical coiled-coil rod, which can separate in the region adjacent to the head-rod junction (Trybus, K. M. 1994. J. Biol. Chem. 269:20819-20822). To test whether this flexibility at the head-rod junction is important for the mechanical performance of myosin, we used the optical trap to measure the unitary displacements of heavy meromyosin constructs in which a stable coiled-coil sequence derived from the leucine zipper was introduced into the myosin rod. The zipper was positioned either immediately after the heads (0-hep zip) or following 15 heptads of native sequence (15-hep zip). The unitary displacement (d) decreased from d = 9.7 +/- 0.6 nm for wild-type heavy meromyosin (WT HMM) to d = 0.1 +/- 0.3 nm for the 0-hep zip construct (mean +/- SE). Native values were restored in the 15-hep zip construct (d = 7.5 +/- 0.7 nm). We conclude that flexibility at the myosin head-rod junction, which is provided by an unstable coiled-coil region, is essential for optimal mechanical performance. PMID:11259302